Query 006782
Match_columns 631
No_of_seqs 540 out of 3186
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 14:25:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02318 phosphoribulokinase/u 100.0 7E-168 2E-172 1378.9 48.3 625 1-627 1-625 (656)
2 COG0572 Udk Uridine kinase [Nu 100.0 1.4E-34 3.1E-39 288.2 16.9 182 64-252 6-196 (218)
3 PTZ00301 uridine kinase; Provi 100.0 2.4E-29 5.1E-34 251.8 15.2 175 66-241 3-190 (210)
4 PF00485 PRK: Phosphoribulokin 100.0 3.3E-28 7.1E-33 239.3 13.3 171 68-240 1-188 (194)
5 COG1135 AbcC ABC-type metal io 99.9 7E-30 1.5E-34 263.6 -2.1 268 33-339 1-297 (339)
6 cd02029 PRK_like Phosphoribulo 99.9 9.1E-27 2E-31 239.0 14.7 169 68-238 1-200 (277)
7 COG1437 CyaB Adenylate cyclase 99.9 2.2E-25 4.7E-30 214.8 15.9 150 262-413 13-177 (178)
8 cd02025 PanK Pantothenate kina 99.9 1.3E-25 2.8E-30 226.2 14.1 174 68-241 1-211 (220)
9 KOG4203 Armadillo/beta-Catenin 99.9 9.3E-27 2E-31 257.1 6.1 398 62-619 40-463 (473)
10 PLN02348 phosphoribulokinase 99.9 6.5E-25 1.4E-29 235.8 17.3 175 61-238 44-242 (395)
11 cd02028 UMPK_like Uridine mono 99.9 4.1E-25 8.8E-30 215.7 13.9 169 68-238 1-178 (179)
12 PRK05480 uridine/cytidine kina 99.9 5.7E-25 1.2E-29 218.2 14.8 179 64-243 4-191 (209)
13 PRK15453 phosphoribulokinase; 99.9 2.4E-24 5.2E-29 222.7 15.5 173 65-238 4-206 (290)
14 TIGR00235 udk uridine kinase. 99.9 6.5E-24 1.4E-28 210.9 16.3 176 66-242 6-190 (207)
15 TIGR00318 cyaB adenylyl cyclas 99.9 1E-23 2.2E-28 205.3 16.7 147 263-410 14-173 (174)
16 TIGR00554 panK_bact pantothena 99.9 2.6E-23 5.7E-28 217.3 16.0 179 63-241 59-279 (290)
17 cd02023 UMPK Uridine monophosp 99.9 9.5E-23 2.1E-27 200.5 16.2 175 68-243 1-184 (198)
18 PRK05439 pantothenate kinase; 99.9 1.3E-22 2.8E-27 213.6 17.3 179 62-240 82-298 (311)
19 cd02026 PRK Phosphoribulokinas 99.9 1.2E-22 2.7E-27 210.9 15.7 169 68-239 1-176 (273)
20 PRK07429 phosphoribulokinase; 99.9 3.3E-22 7.2E-27 212.4 16.6 174 63-239 5-185 (327)
21 COG1126 GlnQ ABC-type polar am 99.9 5.7E-23 1.2E-27 203.7 7.0 203 42-281 7-236 (240)
22 TIGR02314 ABC_MetN D-methionin 99.8 5.6E-22 1.2E-26 212.1 5.1 265 34-337 2-298 (343)
23 COG3842 PotA ABC-type spermidi 99.8 2.4E-21 5.3E-26 206.4 4.4 137 42-181 10-170 (352)
24 COG1127 Ttg2A ABC-type transpo 99.8 7.1E-21 1.5E-25 191.3 7.0 196 40-271 11-236 (263)
25 PRK09270 nucleoside triphospha 99.8 1E-19 2.3E-24 183.7 15.1 179 63-243 30-224 (229)
26 COG1124 DppF ABC-type dipeptid 99.8 1.3E-20 2.8E-25 189.9 5.4 212 33-281 3-242 (252)
27 PRK06696 uridine kinase; Valid 99.8 3.6E-19 7.8E-24 179.1 13.8 178 63-241 19-211 (223)
28 COG1116 TauB ABC-type nitrate/ 99.8 2.2E-20 4.8E-25 189.2 4.8 170 41-219 7-196 (248)
29 COG1118 CysA ABC-type sulfate/ 99.8 2.6E-20 5.7E-25 192.6 5.1 200 45-281 10-238 (345)
30 COG3839 MalK ABC-type sugar tr 99.8 3.1E-20 6.6E-25 197.1 4.8 137 42-181 8-167 (338)
31 COG1136 SalX ABC-type antimicr 99.8 3.6E-20 7.8E-25 186.7 3.5 145 34-181 2-176 (226)
32 COG1125 OpuBA ABC-type proline 99.8 6.1E-20 1.3E-24 185.8 4.3 203 43-281 7-236 (309)
33 COG1120 FepC ABC-type cobalami 99.8 1.6E-19 3.4E-24 185.3 5.7 163 40-212 5-197 (258)
34 PRK11153 metN DL-methionine tr 99.8 1.4E-19 2.9E-24 193.7 5.0 249 49-336 17-297 (343)
35 cd02024 NRK1 Nicotinamide ribo 99.8 1E-18 2.2E-23 172.2 8.8 159 68-226 1-180 (187)
36 cd07890 CYTH-like_AC_IV-like A 99.7 2.4E-17 5.1E-22 159.4 15.0 146 262-408 11-169 (169)
37 PRK13537 nodulation ABC transp 99.7 2.7E-18 5.9E-23 181.0 7.9 193 41-270 11-227 (306)
38 TIGR03265 PhnT2 putative 2-ami 99.7 1.9E-18 4.1E-23 185.7 6.7 203 41-280 8-234 (353)
39 PRK11650 ugpC glycerol-3-phosp 99.7 2.3E-18 4.9E-23 185.3 7.3 196 42-274 8-228 (356)
40 PRK11432 fbpC ferric transport 99.7 2.8E-18 6.1E-23 184.3 7.4 204 41-281 10-237 (351)
41 PRK09452 potA putrescine/sperm 99.7 3.1E-18 6.8E-23 185.4 7.4 204 41-281 18-245 (375)
42 COG1137 YhbG ABC-type (unclass 99.7 5.4E-19 1.2E-23 173.5 -0.5 197 38-272 5-230 (243)
43 COG1122 CbiO ABC-type cobalt t 99.7 1.7E-17 3.7E-22 169.0 10.3 193 42-271 8-229 (235)
44 TIGR03258 PhnT 2-aminoethylpho 99.7 6E-18 1.3E-22 182.4 7.3 202 42-280 10-238 (362)
45 PRK10851 sulfate/thiosulfate t 99.7 8.3E-18 1.8E-22 180.8 7.9 198 41-275 6-231 (353)
46 COG1131 CcmA ABC-type multidru 99.7 3.5E-18 7.5E-23 179.3 4.7 192 41-269 8-225 (293)
47 COG1117 PstB ABC-type phosphat 99.7 2.7E-18 5.8E-23 170.2 2.8 138 40-181 10-183 (253)
48 COG3638 ABC-type phosphate/pho 99.7 3.3E-18 7.2E-23 171.8 3.3 169 33-214 3-208 (258)
49 PRK13536 nodulation factor exp 99.7 1.4E-17 3E-22 178.2 8.2 194 40-270 44-261 (340)
50 PRK11000 maltose/maltodextrin 99.7 1.1E-17 2.3E-22 180.8 7.2 197 41-274 7-227 (369)
51 PRK11607 potG putrescine trans 99.7 8.9E-18 1.9E-22 182.0 6.4 204 41-281 23-250 (377)
52 COG0411 LivG ABC-type branched 99.7 8.6E-18 1.9E-22 169.6 5.7 197 39-272 6-241 (250)
53 COG2884 FtsE Predicted ATPase 99.7 6.9E-18 1.5E-22 164.7 4.6 162 34-208 2-191 (223)
54 cd03261 ABC_Org_Solvent_Resist 99.7 2.9E-17 6.2E-22 165.8 8.5 137 42-181 5-170 (235)
55 COG4555 NatA ABC-type Na+ tran 99.7 2.8E-18 6.1E-23 168.7 1.1 141 34-181 2-167 (245)
56 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 7.2E-17 1.6E-21 165.2 10.7 164 41-214 8-199 (254)
57 TIGR01188 drrA daunorubicin re 99.7 2E-17 4.3E-22 173.8 6.3 184 48-268 4-211 (302)
58 TIGR01288 nodI ATP-binding ABC 99.7 2.8E-17 6.2E-22 172.7 7.4 137 41-180 8-168 (303)
59 cd03296 ABC_CysA_sulfate_impor 99.7 3.5E-17 7.5E-22 165.8 7.7 138 41-181 6-170 (239)
60 COG4598 HisP ABC-type histidin 99.7 1.7E-17 3.7E-22 160.7 4.8 164 41-214 10-212 (256)
61 PRK09473 oppD oligopeptide tra 99.7 3.2E-17 7E-22 174.7 7.0 213 32-281 11-262 (330)
62 cd03265 ABC_DrrA DrrA is the A 99.7 4.7E-17 1E-21 162.7 7.5 136 43-181 6-165 (220)
63 COG4152 ABC-type uncharacteriz 99.7 1.2E-17 2.6E-22 168.3 3.0 193 41-270 6-219 (300)
64 TIGR01186 proV glycine betaine 99.7 2.8E-17 6.1E-22 177.2 6.0 191 47-274 3-223 (363)
65 cd03218 ABC_YhbG The ABC trans 99.7 6.3E-17 1.4E-21 162.7 8.1 137 42-181 5-167 (232)
66 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 8.5E-17 1.8E-21 160.3 8.8 128 50-180 17-173 (218)
67 COG1123 ATPase components of v 99.7 2.8E-17 6.1E-22 182.6 5.8 213 33-281 280-530 (539)
68 cd03219 ABC_Mj1267_LivG_branch 99.7 4.6E-17 9.9E-22 164.1 6.8 136 42-180 5-176 (236)
69 PRK15079 oligopeptide ABC tran 99.7 4.5E-17 9.7E-22 173.7 6.8 188 49-273 33-254 (331)
70 cd03258 ABC_MetN_methionine_tr 99.7 5.2E-17 1.1E-21 163.6 6.9 128 51-181 19-174 (233)
71 TIGR00960 3a0501s02 Type II (G 99.7 7.4E-17 1.6E-21 160.6 7.8 128 50-180 16-171 (216)
72 PRK07667 uridine kinase; Provi 99.7 2E-16 4.4E-21 156.1 10.5 163 65-237 16-192 (193)
73 cd03259 ABC_Carb_Solutes_like 99.7 6.3E-17 1.4E-21 160.8 6.8 136 42-180 5-163 (213)
74 PRK09493 glnQ glutamine ABC tr 99.7 6.2E-17 1.3E-21 163.9 6.7 192 42-270 6-225 (240)
75 cd03224 ABC_TM1139_LivF_branch 99.7 8.6E-17 1.9E-21 160.5 7.5 136 42-180 5-165 (222)
76 PRK11308 dppF dipeptide transp 99.7 6.4E-17 1.4E-21 172.2 6.9 206 33-275 5-249 (327)
77 TIGR02315 ABC_phnC phosphonate 99.7 1E-16 2.2E-21 162.3 7.6 135 43-180 7-178 (243)
78 cd03269 ABC_putative_ATPase Th 99.7 7.2E-17 1.6E-21 160.1 6.4 136 42-180 5-161 (210)
79 TIGR03522 GldA_ABC_ATP gliding 99.7 9.9E-17 2.1E-21 168.6 7.5 137 41-180 6-166 (301)
80 cd03230 ABC_DR_subfamily_A Thi 99.7 1.3E-16 2.8E-21 154.2 7.4 116 43-180 6-128 (173)
81 PRK11264 putative amino-acid A 99.7 8E-17 1.7E-21 163.9 6.1 136 42-180 8-177 (250)
82 COG0444 DppD ABC-type dipeptid 99.7 1.3E-16 2.8E-21 166.9 7.7 211 35-281 3-254 (316)
83 PRK10619 histidine/lysine/argi 99.7 1.1E-16 2.5E-21 163.8 7.0 136 42-180 10-185 (257)
84 cd03295 ABC_OpuCA_Osmoprotecti 99.7 1.1E-16 2.4E-21 162.4 6.8 135 43-180 6-168 (242)
85 cd03268 ABC_BcrA_bacitracin_re 99.7 1.3E-16 2.7E-21 158.1 6.9 136 42-180 5-159 (208)
86 cd03256 ABC_PhnC_transporter A 99.7 1.6E-16 3.5E-21 160.4 7.8 135 43-180 6-177 (241)
87 PRK14247 phosphate ABC transpo 99.7 1.6E-16 3.5E-21 161.8 7.9 191 43-271 9-235 (250)
88 cd03294 ABC_Pro_Gly_Bertaine T 99.7 7.1E-17 1.5E-21 166.9 5.2 137 41-180 28-193 (269)
89 cd03293 ABC_NrtD_SsuB_transpor 99.6 1.1E-16 2.4E-21 160.1 6.2 128 50-180 17-164 (220)
90 PRK11831 putative ABC transpor 99.6 1.5E-16 3.2E-21 164.4 7.4 136 42-180 12-176 (269)
91 TIGR02673 FtsE cell division A 99.6 1.3E-16 2.9E-21 158.4 6.8 130 49-181 14-171 (214)
92 cd03226 ABC_cobalt_CbiO_domain 99.6 1.3E-16 2.9E-21 157.8 6.6 134 44-180 6-159 (205)
93 PRK09536 btuD corrinoid ABC tr 99.6 1.6E-16 3.5E-21 173.4 7.8 193 41-270 7-228 (402)
94 COG0410 LivF ABC-type branched 99.6 2.1E-16 4.5E-21 158.6 7.8 195 41-272 7-228 (237)
95 cd03266 ABC_NatA_sodium_export 99.6 1.1E-16 2.4E-21 159.4 5.7 127 51-180 19-169 (218)
96 cd03301 ABC_MalK_N The N-termi 99.6 1.7E-16 3.6E-21 157.6 6.7 136 42-180 5-163 (213)
97 PRK11144 modC molybdate transp 99.6 2.1E-16 4.6E-21 169.7 7.9 198 43-279 6-227 (352)
98 PRK11022 dppD dipeptide transp 99.6 1.4E-16 3.1E-21 169.5 6.4 207 35-278 5-251 (326)
99 cd03262 ABC_HisP_GlnQ_permease 99.6 2.6E-16 5.6E-21 156.1 7.9 154 42-205 5-186 (213)
100 PRK14250 phosphate ABC transpo 99.6 1.7E-16 3.7E-21 161.2 6.7 136 42-181 8-165 (241)
101 cd03229 ABC_Class3 This class 99.6 1.9E-16 4.1E-21 153.7 6.4 118 43-180 6-133 (178)
102 PRK11124 artP arginine transpo 99.6 2.4E-16 5.1E-21 159.8 7.3 137 41-180 6-174 (242)
103 cd03263 ABC_subfamily_A The AB 99.6 1.9E-16 4.2E-21 157.9 6.5 128 50-180 15-166 (220)
104 PRK10908 cell division protein 99.6 2.5E-16 5.5E-21 157.6 7.2 130 48-180 13-170 (222)
105 PRK13637 cbiO cobalt transport 99.6 2.4E-16 5.1E-21 164.7 7.2 184 50-270 20-234 (287)
106 PRK10895 lipopolysaccharide AB 99.6 3.4E-16 7.3E-21 158.6 8.2 136 42-180 8-170 (241)
107 PRK13646 cbiO cobalt transport 99.6 1.9E-16 4.1E-21 165.2 6.4 183 50-270 20-235 (286)
108 cd03225 ABC_cobalt_CbiO_domain 99.6 2.8E-16 6E-21 155.8 7.1 136 43-181 5-168 (211)
109 TIGR00972 3a0107s01c2 phosphat 99.6 2.7E-16 5.9E-21 160.0 7.2 135 42-180 6-177 (247)
110 PRK15093 antimicrobial peptide 99.6 2.2E-16 4.7E-21 168.2 6.7 203 34-273 4-251 (330)
111 TIGR02211 LolD_lipo_ex lipopro 99.6 5E-16 1.1E-20 155.1 8.8 128 50-180 18-174 (221)
112 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 5.7E-16 1.2E-20 156.6 9.3 135 43-180 7-165 (236)
113 PRK11614 livF leucine/isoleuci 99.6 3.1E-16 6.6E-21 158.5 7.1 192 41-269 9-225 (237)
114 TIGR03410 urea_trans_UrtE urea 99.6 2.7E-16 5.9E-21 158.0 6.7 136 42-180 5-164 (230)
115 PRK13643 cbiO cobalt transport 99.6 2.5E-16 5.4E-21 164.5 6.7 182 51-270 20-233 (288)
116 cd03292 ABC_FtsE_transporter F 99.6 3.5E-16 7.6E-21 155.3 7.3 129 50-181 14-170 (214)
117 TIGR03005 ectoine_ehuA ectoine 99.6 2.6E-16 5.7E-21 160.6 6.6 136 42-180 5-179 (252)
118 PRK13650 cbiO cobalt transport 99.6 3.1E-16 6.8E-21 163.0 7.2 148 50-207 20-194 (279)
119 TIGR03415 ABC_choXWV_ATP choli 99.6 1.9E-16 4.1E-21 171.8 5.7 191 45-272 32-256 (382)
120 PRK14267 phosphate ABC transpo 99.6 3.7E-16 8E-21 159.4 7.4 137 41-180 8-182 (253)
121 PRK13651 cobalt transporter AT 99.6 2.3E-16 5E-21 166.4 6.1 184 51-271 21-255 (305)
122 PRK14272 phosphate ABC transpo 99.6 3.7E-16 8E-21 159.2 7.3 193 41-271 8-237 (252)
123 PRK14268 phosphate ABC transpo 99.6 3.3E-16 7.2E-21 160.6 7.1 193 41-272 16-244 (258)
124 PRK14242 phosphate transporter 99.6 4E-16 8.7E-21 159.2 7.6 135 42-180 11-182 (253)
125 cd03246 ABCC_Protease_Secretio 99.6 5E-16 1.1E-20 150.1 7.7 108 50-181 15-130 (173)
126 PRK10070 glycine betaine trans 99.6 2.7E-16 5.8E-21 171.6 6.4 190 46-272 37-256 (400)
127 cd03257 ABC_NikE_OppD_transpor 99.6 3.6E-16 7.9E-21 156.4 6.9 127 51-180 19-178 (228)
128 TIGR03411 urea_trans_UrtD urea 99.6 4.9E-16 1.1E-20 157.4 7.7 136 42-180 7-176 (242)
129 PRK13634 cbiO cobalt transport 99.6 3.4E-16 7.5E-21 163.7 6.8 128 50-181 20-179 (290)
130 cd03215 ABC_Carb_Monos_II This 99.6 7.9E-16 1.7E-20 149.9 8.7 112 52-181 15-138 (182)
131 PRK13641 cbiO cobalt transport 99.6 3.8E-16 8.3E-21 163.0 6.8 183 50-270 20-234 (287)
132 PRK15439 autoinducer 2 ABC tra 99.6 3.9E-16 8.5E-21 175.1 7.3 156 41-206 15-192 (510)
133 COG4175 ProV ABC-type proline/ 99.6 3.1E-16 6.6E-21 163.0 5.8 200 46-281 37-265 (386)
134 TIGR02142 modC_ABC molybdenum 99.6 6E-16 1.3E-20 166.4 8.2 192 43-273 5-224 (354)
135 COG4608 AppF ABC-type oligopep 99.6 7.7E-16 1.7E-20 158.0 8.6 199 34-281 5-210 (268)
136 cd03235 ABC_Metallic_Cations A 99.6 4.1E-16 8.9E-21 155.0 6.3 135 43-180 5-165 (213)
137 cd03232 ABC_PDR_domain2 The pl 99.6 8.2E-16 1.8E-20 151.2 8.2 116 50-180 20-141 (192)
138 PRK11247 ssuB aliphatic sulfon 99.6 4.7E-16 1E-20 160.2 6.7 137 42-181 17-167 (257)
139 PRK11300 livG leucine/isoleuci 99.6 7.2E-16 1.6E-20 157.3 8.1 136 42-180 10-186 (255)
140 TIGR03608 L_ocin_972_ABC putat 99.6 4.7E-16 1E-20 153.5 6.4 135 43-180 4-167 (206)
141 PRK14273 phosphate ABC transpo 99.6 4.1E-16 8.9E-21 159.3 6.1 190 44-272 14-240 (254)
142 PRK13548 hmuV hemin importer A 99.6 7E-16 1.5E-20 158.5 7.6 136 42-180 7-173 (258)
143 PRK14235 phosphate transporter 99.6 8.2E-16 1.8E-20 158.7 8.0 136 41-180 23-196 (267)
144 PRK10584 putative ABC transpor 99.6 9.3E-16 2E-20 154.0 8.2 128 50-180 23-179 (228)
145 PRK14270 phosphate ABC transpo 99.6 7.2E-16 1.6E-20 157.3 7.4 192 42-272 9-237 (251)
146 TIGR01978 sufC FeS assembly AT 99.6 9E-16 2E-20 155.2 7.9 137 42-181 5-178 (243)
147 PRK14239 phosphate transporter 99.6 6.3E-16 1.4E-20 157.5 6.8 193 41-272 9-238 (252)
148 PRK13647 cbiO cobalt transport 99.6 6E-16 1.3E-20 160.5 6.7 149 49-207 17-191 (274)
149 PRK13635 cbiO cobalt transport 99.6 6.8E-16 1.5E-20 160.6 6.9 148 50-207 20-194 (279)
150 cd03300 ABC_PotA_N PotA is an 99.6 7.4E-16 1.6E-20 155.6 6.9 136 42-180 5-163 (232)
151 PRK11248 tauB taurine transpor 99.6 9E-16 2E-20 157.6 7.6 136 42-180 6-161 (255)
152 PRK09700 D-allose transporter 99.6 6E-16 1.3E-20 173.4 6.7 156 41-206 9-197 (510)
153 PRK13543 cytochrome c biogenes 99.6 1.8E-15 3.8E-20 151.1 9.4 136 42-180 16-170 (214)
154 PRK10261 glutathione transport 99.6 7.2E-16 1.6E-20 177.1 7.5 159 33-201 12-215 (623)
155 TIGR03873 F420-0_ABC_ATP propo 99.6 1.2E-15 2.6E-20 156.2 8.2 137 42-181 6-171 (256)
156 TIGR03740 galliderm_ABC gallid 99.6 8.9E-16 1.9E-20 153.8 7.0 135 43-180 6-157 (223)
157 PRK14240 phosphate transporter 99.6 1E-15 2.2E-20 156.0 7.3 136 41-180 7-179 (250)
158 PRK13652 cbiO cobalt transport 99.6 1.1E-15 2.3E-20 158.8 7.7 192 42-270 8-227 (277)
159 PRK13540 cytochrome c biogenes 99.6 5.1E-16 1.1E-20 153.3 5.0 154 43-206 7-179 (200)
160 PRK11231 fecE iron-dicitrate t 99.6 7.9E-16 1.7E-20 157.5 6.5 136 42-180 7-171 (255)
161 PRK11629 lolD lipoprotein tran 99.6 1.5E-15 3.1E-20 153.4 8.3 128 50-180 22-178 (233)
162 PRK13649 cbiO cobalt transport 99.6 8.3E-16 1.8E-20 159.5 6.6 127 50-180 20-178 (280)
163 PRK10575 iron-hydroxamate tran 99.6 1.3E-15 2.8E-20 156.9 8.0 136 42-180 16-180 (265)
164 cd03233 ABC_PDR_domain1 The pl 99.6 1.3E-15 2.8E-20 151.1 7.6 134 38-180 8-151 (202)
165 PRK14274 phosphate ABC transpo 99.6 1.1E-15 2.5E-20 156.6 7.4 193 41-272 16-245 (259)
166 PRK11701 phnK phosphonate C-P 99.6 7.9E-16 1.7E-20 157.7 6.2 137 41-180 10-184 (258)
167 PRK14244 phosphate ABC transpo 99.6 1.1E-15 2.5E-20 155.8 7.3 143 35-181 3-183 (251)
168 cd03213 ABCG_EPDR ABCG transpo 99.6 1.3E-15 2.7E-20 150.2 7.3 116 50-180 22-144 (194)
169 PRK14256 phosphate ABC transpo 99.6 1.4E-15 3E-20 155.3 7.8 193 42-272 9-238 (252)
170 COG4525 TauB ABC-type taurine 99.6 3.4E-16 7.3E-21 153.5 3.1 165 44-217 12-196 (259)
171 PRK14262 phosphate ABC transpo 99.6 9.8E-16 2.1E-20 156.1 6.6 136 42-181 8-180 (250)
172 PRK10744 pstB phosphate transp 99.6 8.1E-16 1.8E-20 157.9 5.9 135 42-180 18-189 (260)
173 cd03264 ABC_drug_resistance_li 99.6 8.6E-16 1.9E-20 152.5 5.9 135 42-180 5-163 (211)
174 PRK14269 phosphate ABC transpo 99.6 9.9E-16 2.2E-20 155.9 6.5 135 42-180 7-175 (246)
175 PRK14248 phosphate ABC transpo 99.6 1.1E-15 2.4E-20 157.6 6.8 191 42-271 26-253 (268)
176 PRK13631 cbiO cobalt transport 99.6 9.9E-16 2.1E-20 162.7 6.6 184 50-271 39-266 (320)
177 COG4172 ABC-type uncharacteriz 99.6 4.3E-16 9.4E-21 166.0 3.8 196 49-280 299-526 (534)
178 PRK10253 iron-enterobactin tra 99.6 1.3E-15 2.9E-20 156.9 7.2 136 42-180 12-176 (265)
179 PRK09984 phosphonate/organopho 99.6 1.5E-15 3.3E-20 155.9 7.6 136 42-180 9-185 (262)
180 COG1072 CoaA Panthothenate kin 99.6 1.3E-14 2.8E-19 149.1 14.1 163 60-223 76-255 (283)
181 PRK14253 phosphate ABC transpo 99.6 1.3E-15 2.8E-20 155.1 6.7 190 42-270 8-233 (249)
182 PRK10762 D-ribose transporter 99.6 1.5E-15 3.3E-20 170.0 7.8 155 42-206 9-193 (501)
183 PRK10261 glutathione transport 99.6 1.1E-15 2.4E-20 175.5 6.9 193 50-279 337-562 (623)
184 PRK14249 phosphate ABC transpo 99.6 1.7E-15 3.7E-20 154.5 7.5 135 42-180 9-180 (251)
185 PRK13648 cbiO cobalt transport 99.6 2.3E-15 5.1E-20 155.4 8.5 129 50-181 22-176 (269)
186 PRK13644 cbiO cobalt transport 99.6 1.3E-15 2.8E-20 158.1 6.6 156 42-207 6-189 (274)
187 PRK13636 cbiO cobalt transport 99.6 1.5E-15 3.2E-20 158.3 7.1 135 43-180 11-174 (283)
188 cd03228 ABCC_MRP_Like The MRP 99.6 1.6E-15 3.5E-20 146.3 6.8 107 51-181 16-130 (171)
189 PRK14255 phosphate ABC transpo 99.6 1.8E-15 3.8E-20 154.3 7.4 193 41-272 9-238 (252)
190 PRK13638 cbiO cobalt transport 99.6 1.1E-15 2.3E-20 158.1 5.8 135 43-180 7-169 (271)
191 cd03260 ABC_PstB_phosphate_tra 99.6 1.1E-15 2.5E-20 153.3 5.7 135 42-180 5-174 (227)
192 TIGR00968 3a0106s01 sulfate AB 99.6 1.8E-15 3.8E-20 153.4 7.1 135 43-180 6-163 (237)
193 COG1123 ATPase components of v 99.6 1.6E-15 3.4E-20 168.8 7.2 213 33-281 5-255 (539)
194 PRK13639 cbiO cobalt transport 99.6 1.6E-15 3.4E-20 157.4 6.8 184 50-270 15-226 (275)
195 PRK13642 cbiO cobalt transport 99.6 1.7E-15 3.8E-20 157.2 7.0 184 50-271 20-230 (277)
196 TIGR01189 ccmA heme ABC export 99.6 2.6E-15 5.7E-20 147.9 7.9 136 42-180 5-160 (198)
197 PRK06547 hypothetical protein; 99.6 9.3E-15 2E-19 142.3 11.5 153 63-238 12-171 (172)
198 cd03247 ABCC_cytochrome_bd The 99.6 1.4E-15 3E-20 147.5 5.6 109 51-180 16-131 (178)
199 TIGR02769 nickel_nikE nickel i 99.6 2E-15 4.3E-20 155.6 6.8 129 49-180 23-183 (265)
200 PRK14261 phosphate ABC transpo 99.6 2.6E-15 5.7E-20 153.3 7.7 192 41-271 10-238 (253)
201 cd03251 ABCC_MsbA MsbA is an e 99.6 2.8E-15 6.1E-20 151.0 7.7 126 51-180 16-171 (234)
202 PRK13632 cbiO cobalt transport 99.6 2.5E-15 5.3E-20 155.5 7.5 129 49-180 21-175 (271)
203 PRK14241 phosphate transporter 99.6 2.5E-15 5.5E-20 154.0 7.4 137 41-180 8-181 (258)
204 PRK13538 cytochrome c biogenes 99.6 3.1E-15 6.8E-20 148.1 7.8 136 42-180 6-162 (204)
205 PRK14237 phosphate transporter 99.6 2.8E-15 6.2E-20 154.7 7.6 191 42-271 25-252 (267)
206 PRK13633 cobalt transporter AT 99.6 3.1E-15 6.7E-20 155.6 7.9 129 50-181 23-178 (280)
207 PRK10982 galactose/methyl gala 99.6 1.7E-15 3.7E-20 169.0 6.4 154 43-206 4-186 (491)
208 PRK14275 phosphate ABC transpo 99.6 2.2E-15 4.8E-20 157.3 6.8 136 41-180 43-215 (286)
209 PRK14259 phosphate ABC transpo 99.6 2.4E-15 5.2E-20 155.6 7.0 135 42-180 18-187 (269)
210 COG2274 SunT ABC-type bacterio 99.6 9.9E-16 2.2E-20 177.1 4.5 182 48-271 484-697 (709)
211 PRK13640 cbiO cobalt transport 99.6 2.4E-15 5.2E-20 156.7 6.9 129 50-181 20-177 (282)
212 PRK13549 xylose transporter AT 99.6 2.5E-15 5.4E-20 168.3 7.4 156 42-207 10-196 (506)
213 PLN03046 D-glycerate 3-kinase; 99.6 2.4E-14 5.3E-19 155.1 14.6 165 64-229 210-432 (460)
214 PRK14251 phosphate ABC transpo 99.6 2.9E-15 6.4E-20 152.6 7.1 136 41-180 8-180 (251)
215 cd03217 ABC_FeS_Assembly ABC-t 99.6 3.6E-15 7.8E-20 147.6 7.3 121 43-180 6-137 (200)
216 KOG0058 Peptide exporter, ABC 99.6 1.6E-15 3.5E-20 171.4 5.4 198 34-272 466-693 (716)
217 PRK14238 phosphate transporter 99.6 2.7E-15 5.9E-20 155.3 6.6 192 41-271 28-256 (271)
218 cd03231 ABC_CcmA_heme_exporter 99.6 3.9E-15 8.5E-20 147.3 7.5 136 42-180 5-158 (201)
219 cd03297 ABC_ModC_molybdenum_tr 99.6 2.2E-15 4.8E-20 150.0 5.6 133 42-180 5-164 (214)
220 PRK13539 cytochrome c biogenes 99.6 4.8E-15 1E-19 147.3 7.9 137 42-181 7-161 (207)
221 COG4604 CeuD ABC-type enteroch 99.6 5.9E-15 1.3E-19 145.0 8.1 162 43-213 7-195 (252)
222 cd03252 ABCC_Hemolysin The ABC 99.6 3.3E-15 7.1E-20 150.9 6.5 128 50-181 15-172 (237)
223 PRK15112 antimicrobial peptide 99.6 2.5E-15 5.5E-20 155.1 5.8 128 50-180 26-182 (267)
224 PRK11288 araG L-arabinose tran 99.6 3.2E-15 7E-20 167.3 7.0 156 42-207 9-193 (501)
225 cd03298 ABC_ThiQ_thiamine_tran 99.6 4.2E-15 9.1E-20 147.5 7.0 124 55-181 16-162 (211)
226 COG4559 ABC-type hemin transpo 99.6 4.3E-15 9.3E-20 147.4 6.9 194 41-271 5-231 (259)
227 PRK10771 thiQ thiamine transpo 99.6 3.9E-15 8.4E-20 150.2 6.7 124 54-180 16-162 (232)
228 PRK14243 phosphate transporter 99.6 4.3E-15 9.3E-20 153.2 7.1 136 42-181 15-185 (264)
229 COG3840 ThiQ ABC-type thiamine 99.6 1.2E-15 2.6E-20 148.3 2.8 133 44-181 8-163 (231)
230 COG1132 MdlB ABC-type multidru 99.6 3.3E-15 7.1E-20 169.5 6.9 137 41-181 332-499 (567)
231 COG4181 Predicted ABC-type tra 99.6 7.4E-16 1.6E-20 148.4 1.3 145 33-180 6-179 (228)
232 PRK14265 phosphate ABC transpo 99.6 3.7E-15 8E-20 154.6 6.7 136 41-180 24-194 (274)
233 PRK14245 phosphate ABC transpo 99.6 5E-15 1.1E-19 151.0 7.5 192 42-272 8-236 (250)
234 cd03254 ABCC_Glucan_exporter_l 99.6 4.6E-15 9.9E-20 148.9 7.0 135 43-181 8-173 (229)
235 PRK13645 cbiO cobalt transport 99.6 3.4E-15 7.5E-20 155.8 6.2 128 51-181 25-184 (289)
236 PRK15134 microcin C ABC transp 99.5 2.6E-15 5.7E-20 169.1 5.4 184 50-270 299-515 (529)
237 PRK14271 phosphate ABC transpo 99.5 5.2E-15 1.1E-19 153.8 7.1 192 41-271 25-252 (276)
238 TIGR02323 CP_lyasePhnK phospho 99.5 3.2E-15 7E-20 152.5 5.4 136 42-180 8-181 (253)
239 PRK10247 putative ABC transpor 99.5 5.6E-15 1.2E-19 148.6 7.1 136 42-181 12-171 (225)
240 TIGR02633 xylG D-xylose ABC tr 99.5 5.4E-15 1.2E-19 165.3 7.6 156 42-207 6-194 (500)
241 PRK10419 nikE nickel transport 99.5 5.3E-15 1.1E-19 152.9 6.7 128 50-180 25-184 (268)
242 PRK14236 phosphate transporter 99.5 7.6E-15 1.7E-19 151.9 7.9 189 43-270 31-256 (272)
243 TIGR01166 cbiO cobalt transpor 99.5 3.9E-15 8.5E-20 145.6 5.5 128 49-180 4-160 (190)
244 PRK15134 microcin C ABC transp 99.5 7.4E-15 1.6E-19 165.5 8.4 148 50-207 22-210 (529)
245 PRK14257 phosphate ABC transpo 99.5 5.1E-15 1.1E-19 157.9 6.4 189 48-275 93-318 (329)
246 PRK10418 nikD nickel transport 99.5 5E-15 1.1E-19 151.6 6.1 128 50-180 16-173 (254)
247 PRK10938 putative molybdenum t 99.5 7.1E-15 1.5E-19 163.9 7.8 184 41-261 7-215 (490)
248 cd03299 ABC_ModC_like Archeal 99.5 7.4E-15 1.6E-19 148.7 7.2 148 43-201 6-176 (235)
249 TIGR01184 ntrCD nitrate transp 99.5 3E-15 6.4E-20 151.2 4.2 125 53-180 1-147 (230)
250 TIGR02770 nickel_nikD nickel i 99.5 2.1E-15 4.6E-20 152.0 3.1 126 52-180 1-158 (230)
251 PRK09544 znuC high-affinity zi 99.5 9.5E-15 2E-19 149.9 7.9 133 41-180 8-153 (251)
252 PRK14266 phosphate ABC transpo 99.5 1.1E-14 2.3E-19 148.4 8.1 136 41-180 7-179 (250)
253 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.5 7.8E-15 1.7E-19 148.2 7.0 128 50-181 16-173 (238)
254 TIGR01277 thiQ thiamine ABC tr 99.5 8.2E-15 1.8E-19 146.0 7.0 126 52-180 13-161 (213)
255 PRK13547 hmuV hemin importer A 99.5 8.7E-15 1.9E-19 152.0 7.5 137 42-181 6-188 (272)
256 TIGR03269 met_CoM_red_A2 methy 99.5 6.5E-15 1.4E-19 165.5 6.9 129 49-180 296-460 (520)
257 TIGR02982 heterocyst_DevA ABC 99.5 1.2E-14 2.5E-19 145.6 7.9 128 50-180 18-174 (220)
258 COG1129 MglA ABC-type sugar tr 99.5 3.6E-15 7.9E-20 164.9 4.5 165 41-215 12-206 (500)
259 KOG0057 Mitochondrial Fe/S clu 99.5 1.2E-14 2.5E-19 160.1 8.1 190 41-270 355-574 (591)
260 cd03234 ABCG_White The White s 99.5 9.2E-15 2E-19 146.9 6.7 130 49-181 19-177 (226)
261 PRK14258 phosphate ABC transpo 99.5 7.2E-15 1.6E-19 151.1 6.0 136 41-180 11-183 (261)
262 cd03289 ABCC_CFTR2 The CFTR su 99.5 8.9E-15 1.9E-19 152.3 6.7 184 48-271 15-226 (275)
263 cd03267 ABC_NatA_like Similar 99.5 8.4E-15 1.8E-19 148.5 6.3 133 45-180 29-186 (236)
264 cd03250 ABCC_MRP_domain1 Domai 99.5 6.9E-15 1.5E-19 145.4 5.5 120 51-180 19-160 (204)
265 PRK14260 phosphate ABC transpo 99.5 9.7E-15 2.1E-19 149.9 6.5 136 41-180 11-183 (259)
266 PRK15064 ABC transporter ATP-b 99.5 1.1E-14 2.3E-19 164.1 7.5 133 42-181 6-189 (530)
267 PRK14254 phosphate ABC transpo 99.5 1.1E-14 2.4E-19 152.1 6.9 136 41-180 43-213 (285)
268 cd03216 ABC_Carb_Monos_I This 99.5 1E-14 2.2E-19 140.1 6.1 102 42-180 5-115 (163)
269 PRK11819 putative ABC transpor 99.5 1.3E-14 2.9E-19 164.5 8.0 134 41-181 10-197 (556)
270 COG4619 ABC-type uncharacteriz 99.5 4.5E-15 9.7E-20 142.7 3.3 132 45-180 11-166 (223)
271 cd03253 ABCC_ATM1_transporter 99.5 1.5E-14 3.3E-19 145.8 7.4 128 50-181 14-171 (236)
272 PRK14246 phosphate ABC transpo 99.5 1.2E-14 2.6E-19 149.5 6.4 193 41-271 14-242 (257)
273 TIGR02324 CP_lyasePhnL phospho 99.5 2.1E-14 4.5E-19 143.9 7.9 128 50-180 21-182 (224)
274 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 1.4E-14 3.1E-19 168.4 7.6 136 42-181 482-649 (710)
275 PRK14252 phosphate ABC transpo 99.5 1.5E-14 3.2E-19 149.0 6.8 135 42-180 21-194 (265)
276 COG4618 ArpD ABC-type protease 99.5 1.3E-14 2.9E-19 158.4 6.7 185 48-271 347-561 (580)
277 cd03369 ABCC_NFT1 Domain 2 of 99.5 1.1E-14 2.5E-19 144.2 5.6 127 50-180 21-158 (207)
278 PRK13541 cytochrome c biogenes 99.5 9E-15 1.9E-19 143.9 4.9 132 46-181 10-157 (195)
279 PRK14263 phosphate ABC transpo 99.5 1.8E-14 3.8E-19 148.6 7.2 135 43-181 14-183 (261)
280 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 2.4E-14 5.1E-19 166.0 9.1 128 49-180 465-621 (686)
281 cd03245 ABCC_bacteriocin_expor 99.5 9.7E-15 2.1E-19 145.7 5.1 128 50-181 17-174 (220)
282 PRK03695 vitamin B12-transport 99.5 1.2E-14 2.6E-19 148.6 5.8 126 52-180 11-166 (248)
283 TIGR03269 met_CoM_red_A2 methy 99.5 1.9E-14 4.2E-19 161.7 8.0 137 42-181 5-202 (520)
284 CHL00131 ycf16 sulfate ABC tra 99.5 2E-14 4.3E-19 146.5 7.3 155 42-206 12-203 (252)
285 PRK13549 xylose transporter AT 99.5 1.4E-14 3.1E-19 162.3 6.6 149 49-207 274-458 (506)
286 COG4148 ModC ABC-type molybdat 99.5 4E-14 8.6E-19 145.4 8.7 184 55-274 16-222 (352)
287 cd03248 ABCC_TAP TAP, the Tran 99.5 2.2E-14 4.9E-19 143.8 6.8 145 32-181 10-184 (226)
288 KOG0055 Multidrug/pheromone ex 99.5 6.3E-15 1.4E-19 174.8 3.1 184 49-272 365-578 (1228)
289 cd03223 ABCD_peroxisomal_ALDP 99.5 1.7E-14 3.7E-19 138.9 5.4 111 50-181 14-125 (166)
290 PRK11174 cysteine/glutathione 99.5 3.5E-14 7.7E-19 161.6 8.8 128 49-180 362-518 (588)
291 PRK15056 manganese/iron transp 99.5 3.6E-14 7.9E-19 146.9 8.0 129 49-180 19-175 (272)
292 PRK08233 hypothetical protein; 99.5 2.7E-13 5.8E-18 130.4 13.3 151 66-239 3-160 (182)
293 TIGR01257 rim_protein retinal- 99.5 2E-14 4.3E-19 180.5 6.8 191 32-261 1936-2150(2272)
294 PRK09700 D-allose transporter 99.5 2.5E-14 5.4E-19 160.4 7.0 127 52-181 278-443 (510)
295 cd03290 ABCC_SUR1_N The SUR do 99.5 3.8E-14 8.2E-19 141.6 7.5 127 50-180 14-173 (218)
296 COG4172 ABC-type uncharacteriz 99.5 5.5E-14 1.2E-18 150.1 9.1 213 33-281 6-258 (534)
297 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 3.4E-14 7.4E-19 161.0 7.4 132 43-181 10-195 (552)
298 cd03214 ABC_Iron-Siderophores_ 99.5 2.2E-14 4.8E-19 139.5 5.1 117 44-180 6-130 (180)
299 PRK14264 phosphate ABC transpo 99.5 3.6E-14 7.9E-19 149.6 6.9 136 41-180 49-233 (305)
300 PRK09580 sufC cysteine desulfu 99.5 5.5E-14 1.2E-18 142.8 7.9 136 42-180 6-178 (248)
301 PLN02796 D-glycerate 3-kinase 99.5 2.3E-13 4.9E-18 145.2 12.7 176 51-227 80-318 (347)
302 COG3845 ABC-type uncharacteriz 99.5 3.9E-14 8.6E-19 154.6 7.0 163 44-216 11-202 (501)
303 TIGR02633 xylG D-xylose ABC tr 99.5 2.7E-14 5.8E-19 159.7 5.7 130 49-181 272-437 (500)
304 PRK15064 ABC transporter ATP-b 99.5 3.5E-14 7.5E-19 160.1 6.4 134 41-181 323-472 (530)
305 PRK13546 teichoic acids export 99.5 5.9E-14 1.3E-18 145.3 7.6 124 48-180 35-176 (264)
306 PRK11160 cysteine/glutathione 99.5 5.9E-14 1.3E-18 159.8 8.1 136 41-180 342-508 (574)
307 KOG0055 Multidrug/pheromone ex 99.5 2.3E-14 5.1E-19 170.0 4.8 197 34-271 988-1214(1228)
308 TIGR03375 type_I_sec_LssB type 99.5 6E-14 1.3E-18 162.9 8.2 129 49-181 477-635 (694)
309 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.5 4.1E-14 8.8E-19 142.5 5.9 132 41-180 26-175 (224)
310 TIGR01193 bacteriocin_ABC ABC- 99.5 5.1E-14 1.1E-18 163.8 7.5 135 42-180 478-644 (708)
311 cd03288 ABCC_SUR2 The SUR doma 99.5 5.7E-14 1.2E-18 144.2 7.0 128 50-181 34-190 (257)
312 PRK10762 D-ribose transporter 99.5 5.6E-14 1.2E-18 157.3 7.3 146 51-206 266-447 (501)
313 TIGR02868 CydC thiol reductant 99.5 3.7E-14 8.1E-19 159.4 5.6 136 41-180 338-503 (529)
314 TIGR00958 3a01208 Conjugate Tr 99.5 1.8E-14 4E-19 167.8 3.2 127 50-180 494-650 (711)
315 cd03222 ABC_RNaseL_inhibitor T 99.5 2.6E-14 5.7E-19 139.8 3.6 99 42-180 5-104 (177)
316 PLN03211 ABC transporter G-25; 99.5 9.1E-14 2E-18 160.7 8.6 157 46-212 77-264 (659)
317 PRK11288 araG L-arabinose tran 99.5 5.6E-14 1.2E-18 157.3 6.6 146 51-206 267-448 (501)
318 COG4167 SapF ABC-type antimicr 99.5 1E-14 2.2E-19 141.9 0.4 205 45-285 21-254 (267)
319 PRK10790 putative multidrug tr 99.5 9.8E-14 2.1E-18 158.2 8.1 127 50-180 354-509 (592)
320 COG4988 CydD ABC-type transpor 99.5 4.3E-14 9.3E-19 157.2 5.0 134 42-180 327-489 (559)
321 TIGR01842 type_I_sec_PrtD type 99.5 1.1E-13 2.5E-18 156.3 8.6 128 49-180 330-487 (544)
322 COG4161 ArtP ABC-type arginine 99.4 1.2E-13 2.6E-18 132.2 7.2 156 41-206 6-193 (242)
323 PRK10789 putative multidrug tr 99.4 1.2E-13 2.6E-18 157.1 8.1 135 42-180 320-484 (569)
324 PRK11176 lipid transporter ATP 99.4 1E-13 2.2E-18 157.5 7.0 136 42-181 346-514 (582)
325 PRK15439 autoinducer 2 ABC tra 99.4 1.1E-13 2.4E-18 155.5 6.9 127 52-181 278-437 (510)
326 KOG0056 Heavy metal exporter H 99.4 4.7E-14 1E-18 153.0 3.5 128 49-180 550-707 (790)
327 TIGR01257 rim_protein retinal- 99.4 1.2E-13 2.7E-18 173.5 7.2 129 49-180 942-1094(2272)
328 COG4674 Uncharacterized ABC-ty 99.4 3.1E-13 6.8E-18 132.8 8.2 203 40-286 8-245 (249)
329 TIGR01846 type_I_sec_HlyB type 99.4 2.2E-13 4.7E-18 158.3 8.4 135 42-180 460-626 (694)
330 cd03244 ABCC_MRP_domain2 Domai 99.4 1.4E-13 3.1E-18 137.4 5.8 127 50-180 17-172 (221)
331 PRK13657 cyclic beta-1,2-gluca 99.4 2E-13 4.3E-18 155.6 7.6 134 43-180 340-504 (588)
332 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.4 1.9E-13 4.1E-18 128.9 6.2 97 43-180 6-103 (144)
333 TIGR01192 chvA glucan exporter 99.4 2.1E-13 4.6E-18 155.6 7.7 136 41-180 338-504 (585)
334 PRK15177 Vi polysaccharide exp 99.4 9.8E-14 2.1E-18 138.9 4.2 120 52-180 2-137 (213)
335 PRK10982 galactose/methyl gala 99.4 2.7E-13 5.7E-18 151.5 7.4 128 51-181 262-425 (491)
336 cd03237 ABC_RNaseL_inhibitor_d 99.4 1.8E-13 3.9E-18 140.2 5.5 122 52-181 9-149 (246)
337 TIGR02857 CydD thiol reductant 99.4 1.3E-13 2.8E-18 155.0 4.4 128 50-181 335-492 (529)
338 PRK10522 multidrug transporter 99.4 2.3E-13 5.1E-18 153.9 6.4 128 50-181 336-483 (547)
339 PRK10535 macrolide transporter 99.4 2.8E-13 6E-18 156.5 7.1 166 33-208 4-198 (648)
340 PRK13545 tagH teichoic acids e 99.4 2.7E-13 5.8E-18 151.6 6.5 122 50-180 37-176 (549)
341 TIGR02203 MsbA_lipidA lipid A 99.4 3.4E-13 7.3E-18 152.7 7.4 128 49-180 344-502 (571)
342 PRK10938 putative molybdenum t 99.4 3.1E-13 6.6E-18 150.9 6.7 137 41-180 264-434 (490)
343 COG4987 CydC ABC-type transpor 99.4 2.1E-13 4.5E-18 150.2 5.1 174 3-181 301-508 (573)
344 PLN03130 ABC transporter C fam 99.4 3.8E-13 8.3E-18 168.4 8.2 183 49-271 1251-1462(1622)
345 cd03291 ABCC_CFTR1 The CFTR su 99.4 2.5E-13 5.3E-18 142.1 5.5 121 50-180 50-192 (282)
346 PLN03232 ABC transporter C fam 99.4 2.7E-13 5.7E-18 169.2 6.6 190 42-271 1239-1459(1495)
347 PTZ00265 multidrug resistance 99.4 1.8E-13 4E-18 169.8 4.5 163 41-214 1169-1419(1466)
348 TIGR02204 MsbA_rel ABC transpo 99.4 5.2E-13 1.1E-17 151.5 7.8 128 50-181 353-510 (576)
349 PRK13409 putative ATPase RIL; 99.4 5.1E-13 1.1E-17 152.7 7.4 149 42-207 345-507 (590)
350 TIGR01194 cyc_pep_trnsptr cycl 99.4 1.8E-13 3.9E-18 155.2 3.6 125 51-180 356-503 (555)
351 TIGR01187 potA spermidine/putr 99.4 1.8E-13 3.9E-18 145.6 3.0 170 71-274 1-194 (325)
352 PRK10636 putative ABC transpor 99.4 6.1E-13 1.3E-17 153.4 7.5 133 41-180 5-182 (638)
353 PTZ00243 ABC transporter; Prov 99.4 1.4E-13 2.9E-18 172.0 1.9 184 48-271 1321-1534(1560)
354 PRK10636 putative ABC transpor 99.4 4.7E-13 1E-17 154.3 6.1 133 41-180 316-463 (638)
355 TIGR00957 MRP_assoc_pro multi 99.4 1.2E-13 2.6E-18 172.5 1.2 182 50-271 1299-1509(1522)
356 TIGR03771 anch_rpt_ABC anchore 99.4 4.3E-13 9.3E-18 134.9 4.9 121 58-181 1-147 (223)
357 COG0396 sufC Cysteine desulfur 99.4 3.2E-13 6.9E-18 135.7 3.8 158 45-212 11-202 (251)
358 cd00267 ABC_ATPase ABC (ATP-bi 99.3 1.1E-12 2.4E-17 124.5 6.3 98 46-180 8-113 (157)
359 PRK11819 putative ABC transpor 99.3 1E-12 2.3E-17 149.1 7.1 133 41-180 328-478 (556)
360 PRK11147 ABC transporter ATPas 99.3 1E-12 2.2E-17 151.4 7.1 133 41-180 323-473 (635)
361 TIGR00955 3a01204 The Eye Pigm 99.3 1.3E-12 2.9E-17 150.1 7.6 132 47-181 35-200 (617)
362 PTZ00265 multidrug resistance 99.3 5.5E-13 1.2E-17 165.6 4.6 163 41-214 386-640 (1466)
363 TIGR03719 ABC_ABC_ChvD ATP-bin 99.3 7.8E-13 1.7E-17 150.0 5.4 133 41-180 326-476 (552)
364 COG0488 Uup ATPase components 99.3 9.1E-13 2E-17 148.3 5.7 133 41-180 7-186 (530)
365 COG1134 TagH ABC-type polysacc 99.3 1.7E-12 3.7E-17 131.6 6.8 178 46-270 36-236 (249)
366 COG4136 ABC-type uncharacteriz 99.3 4.7E-13 1E-17 126.9 1.8 136 42-180 7-167 (213)
367 COG1101 PhnK ABC-type uncharac 99.3 7.8E-13 1.7E-17 131.8 3.2 159 49-216 18-211 (263)
368 cd03236 ABC_RNaseL_inhibitor_d 99.3 1E-12 2.3E-17 135.4 4.3 125 51-180 15-172 (255)
369 PF00005 ABC_tran: ABC transpo 99.3 3.8E-13 8.3E-18 123.9 0.2 121 53-176 1-137 (137)
370 PRK11147 ABC transporter ATPas 99.3 3.1E-12 6.8E-17 147.5 7.7 136 41-180 7-189 (635)
371 COG4107 PhnK ABC-type phosphon 99.3 1.4E-12 3.1E-17 126.2 4.1 199 43-277 12-248 (258)
372 COG4133 CcmA ABC-type transpor 99.3 1.5E-12 3.2E-17 127.4 4.1 139 39-180 4-163 (209)
373 PF01928 CYTH: CYTH domain; I 99.3 2.3E-11 4.9E-16 118.3 12.2 132 274-409 29-183 (185)
374 TIGR00954 3a01203 Peroxysomal 99.3 1.4E-12 3E-17 151.0 4.0 124 49-180 464-615 (659)
375 TIGR01271 CFTR_protein cystic 99.3 7.7E-13 1.7E-17 165.0 1.9 129 48-180 1230-1386(1490)
376 cd02022 DPCK Dephospho-coenzym 99.3 7.7E-12 1.7E-16 121.9 8.1 160 68-243 1-177 (179)
377 TIGR00956 3a01205 Pleiotropic 99.3 2.5E-12 5.3E-17 159.5 5.3 156 48-213 774-961 (1394)
378 PLN03073 ABC transporter F fam 99.2 3.8E-12 8.3E-17 148.4 4.9 131 41-180 512-660 (718)
379 cd07762 CYTH-like_Pase_1 Uncha 99.2 1E-10 2.2E-15 114.9 14.0 120 277-400 26-171 (180)
380 COG4586 ABC-type uncharacteriz 99.2 9.2E-13 2E-17 135.1 -0.6 185 45-269 32-245 (325)
381 PRK13409 putative ATPase RIL; 99.2 4.3E-12 9.3E-17 145.2 3.7 168 32-212 64-269 (590)
382 cd03238 ABC_UvrA The excision 99.2 8.3E-12 1.8E-16 122.2 4.4 132 49-207 7-142 (176)
383 COG5265 ATM1 ABC-type transpor 99.2 6.1E-12 1.3E-16 135.3 3.6 184 48-271 274-487 (497)
384 COG4778 PhnL ABC-type phosphon 99.2 1.8E-11 4E-16 118.3 6.4 148 50-207 24-205 (235)
385 PLN03140 ABC transporter G fam 99.2 1.6E-11 3.4E-16 152.6 6.4 129 49-180 177-369 (1470)
386 PRK14732 coaE dephospho-CoA ki 99.2 2.6E-11 5.7E-16 120.5 6.6 160 68-243 1-177 (196)
387 KOG2702 Predicted panthothenat 99.2 3.9E-11 8.5E-16 120.4 7.7 169 67-237 120-318 (323)
388 cd07758 ThTPase Thiamine Triph 99.2 2.4E-10 5.3E-15 113.7 12.9 133 263-400 11-181 (196)
389 TIGR00957 MRP_assoc_pro multi 99.2 4.1E-11 8.8E-16 150.1 9.0 122 50-181 651-794 (1522)
390 TIGR00956 3a01205 Pleiotropic 99.2 3.8E-11 8.3E-16 149.0 8.3 155 48-212 72-268 (1394)
391 COG0488 Uup ATPase components 99.2 3.2E-11 6.9E-16 135.9 6.5 133 41-180 325-472 (530)
392 TIGR01271 CFTR_protein cystic 99.2 3.1E-11 6.7E-16 150.8 6.7 122 50-181 439-582 (1490)
393 PRK14730 coaE dephospho-CoA ki 99.1 1E-10 2.2E-15 116.1 8.5 162 67-243 2-181 (195)
394 PRK00081 coaE dephospho-CoA ki 99.1 1.1E-10 2.4E-15 115.5 8.5 162 66-243 2-180 (194)
395 PRK13477 bifunctional pantoate 99.1 1.9E-10 4.1E-15 129.1 11.2 186 46-240 268-486 (512)
396 PLN03140 ABC transporter G fam 99.1 1.4E-11 3E-16 153.0 2.3 150 48-207 891-1072(1470)
397 PLN03130 ABC transporter C fam 99.1 6.4E-11 1.4E-15 148.7 8.0 121 50-180 630-773 (1622)
398 KOG0054 Multidrug resistance-a 99.1 1.6E-11 3.4E-16 149.1 2.4 192 41-272 1144-1364(1381)
399 PF01121 CoaE: Dephospho-CoA k 99.1 6.6E-11 1.4E-15 116.3 5.8 160 67-242 1-177 (180)
400 PLN03232 ABC transporter C fam 99.1 8.1E-11 1.7E-15 147.2 7.8 123 50-181 630-774 (1495)
401 KOG0061 Transporter, ABC super 99.1 3.6E-11 7.8E-16 138.1 2.9 155 49-213 42-229 (613)
402 PRK14733 coaE dephospho-CoA ki 99.1 2.4E-10 5.1E-15 114.5 8.3 161 66-243 6-185 (204)
403 PRK14734 coaE dephospho-CoA ki 99.1 2.4E-10 5.3E-15 113.8 8.4 163 67-243 2-181 (200)
404 PLN03073 ABC transporter F fam 99.1 6.7E-11 1.5E-15 138.1 4.5 137 41-180 181-377 (718)
405 PTZ00243 ABC transporter; Prov 99.1 8.9E-11 1.9E-15 147.1 5.7 124 48-181 671-816 (1560)
406 KOG0059 Lipid exporter ABCA1 a 99.1 1.3E-10 2.9E-15 138.7 6.8 157 39-205 566-749 (885)
407 PRK14731 coaE dephospho-CoA ki 99.1 2E-10 4.3E-15 115.0 6.5 166 64-243 3-189 (208)
408 PRK03333 coaE dephospho-CoA ki 99.0 2.8E-10 6.1E-15 124.5 7.8 259 67-348 2-288 (395)
409 COG1119 ModF ABC-type molybden 99.0 1.8E-10 3.8E-15 117.1 5.3 137 41-181 35-205 (257)
410 KOG3308 Uncharacterized protei 99.0 1.8E-10 3.9E-15 113.7 4.6 167 65-240 3-187 (225)
411 cd02020 CMPK Cytidine monophos 99.0 1.2E-09 2.7E-14 101.1 9.0 143 68-238 1-145 (147)
412 PTZ00451 dephospho-CoA kinase; 99.0 1.6E-09 3.4E-14 111.4 9.4 167 66-243 1-194 (244)
413 PLN02422 dephospho-CoA kinase 99.0 8.8E-10 1.9E-14 112.4 7.2 163 67-243 2-181 (232)
414 KOG0054 Multidrug resistance-a 99.0 1.2E-10 2.6E-15 141.5 0.7 184 42-270 525-731 (1381)
415 TIGR00152 dephospho-CoA kinase 98.9 1.6E-09 3.4E-14 106.2 6.7 162 68-243 1-179 (188)
416 TIGR00017 cmk cytidylate kinas 98.9 6.8E-09 1.5E-13 104.9 8.6 80 160-240 121-201 (217)
417 COG0283 Cmk Cytidylate kinase 98.8 7.3E-09 1.6E-13 103.7 7.5 79 160-240 121-201 (222)
418 COG4138 BtuD ABC-type cobalami 98.8 4.4E-09 9.6E-14 102.4 4.0 144 53-207 15-185 (248)
419 cd03270 ABC_UvrA_I The excisio 98.7 6.4E-09 1.4E-13 105.3 3.6 60 141-207 131-192 (226)
420 PRK08118 topology modulation p 98.7 6.5E-08 1.4E-12 93.8 10.2 105 68-207 3-108 (167)
421 COG0237 CoaE Dephospho-CoA kin 98.7 1.5E-08 3.2E-13 101.4 5.1 162 66-244 2-180 (201)
422 PRK07261 topology modulation p 98.7 3.7E-08 7.9E-13 95.7 7.3 124 68-226 2-127 (171)
423 KOG0062 ATPase component of AB 98.7 5.3E-09 1.1E-13 115.2 1.0 137 41-180 84-231 (582)
424 COG4615 PvdE ABC-type sideroph 98.7 7.4E-09 1.6E-13 111.1 2.1 124 53-179 339-480 (546)
425 PRK09518 bifunctional cytidyla 98.7 9.5E-08 2.1E-12 112.0 11.2 76 161-241 139-214 (712)
426 cd03278 ABC_SMC_barmotin Barmo 98.7 5.4E-09 1.2E-13 103.9 0.6 120 54-181 14-151 (197)
427 KOG3220 Similar to bacterial d 98.7 1.2E-08 2.5E-13 101.1 2.8 165 66-244 1-182 (225)
428 KOG0065 Pleiotropic drug resis 98.6 6.1E-08 1.3E-12 116.6 9.0 161 37-207 791-983 (1391)
429 COG4240 Predicted kinase [Gene 98.6 1.9E-07 4.2E-12 94.2 10.9 167 62-230 46-273 (300)
430 KOG2878 Predicted kinase [Gene 98.6 2.3E-07 4.9E-12 92.0 11.1 163 64-227 29-254 (282)
431 cd03272 ABC_SMC3_euk Eukaryoti 98.6 1.2E-08 2.7E-13 103.3 1.9 126 47-180 12-195 (243)
432 PF13207 AAA_17: AAA domain; P 98.6 6.1E-08 1.3E-12 87.4 5.2 116 68-206 1-118 (121)
433 cd00820 PEPCK_HprK Phosphoenol 98.6 1E-07 2.2E-12 86.3 5.9 69 50-129 2-77 (107)
434 cd03279 ABC_sbcCD SbcCD and ot 98.5 4.4E-08 9.6E-13 98.1 3.1 122 54-180 18-166 (213)
435 COG1129 MglA ABC-type sugar tr 98.5 2.1E-07 4.4E-12 103.9 8.0 172 52-260 274-480 (500)
436 PRK06217 hypothetical protein; 98.5 3.7E-07 8E-12 89.2 8.8 104 68-201 3-107 (183)
437 COG4170 SapD ABC-type antimicr 98.5 3.1E-07 6.8E-12 91.8 8.2 143 36-181 6-192 (330)
438 COG1102 Cmk Cytidylate kinase 98.5 8.7E-08 1.9E-12 92.2 3.9 146 68-239 2-154 (179)
439 PRK00023 cmk cytidylate kinase 98.5 2.1E-07 4.5E-12 94.5 6.7 79 160-239 123-203 (225)
440 cd07891 CYTH-like_CthTTM-like_ 98.5 7.1E-07 1.5E-11 85.3 9.4 84 296-385 34-120 (148)
441 COG4178 ABC-type uncharacteriz 98.5 8.8E-08 1.9E-12 108.8 3.6 125 49-180 405-548 (604)
442 PRK11860 bifunctional 3-phosph 98.4 2.2E-07 4.9E-12 108.0 6.2 79 161-241 558-638 (661)
443 PRK01184 hypothetical protein; 98.4 2.8E-07 6.1E-12 89.6 5.7 81 159-243 80-165 (184)
444 cd03240 ABC_Rad50 The catalyti 98.4 4.8E-08 1.1E-12 97.5 0.0 112 68-181 24-155 (204)
445 cd03271 ABC_UvrA_II The excisi 98.4 1.7E-07 3.7E-12 97.3 3.8 152 51-212 9-230 (261)
446 KOG0927 Predicted transporter 98.4 6.9E-08 1.5E-12 107.1 0.8 135 41-180 79-254 (614)
447 PRK06762 hypothetical protein; 98.4 2.9E-06 6.2E-11 81.1 11.3 123 66-216 2-133 (166)
448 TIGR02322 phosphon_PhnN phosph 98.4 3.4E-06 7.4E-11 81.6 11.3 24 68-91 3-26 (179)
449 PRK10078 ribose 1,5-bisphospho 98.3 2.8E-06 6.1E-11 83.2 10.3 23 68-90 4-26 (186)
450 KOG0927 Predicted transporter 98.3 3.9E-07 8.4E-12 101.3 4.6 124 51-181 404-543 (614)
451 TIGR02173 cyt_kin_arch cytidyl 98.3 2.3E-06 5.1E-11 81.4 8.4 148 68-240 2-156 (171)
452 KOG0060 Long-chain acyl-CoA tr 98.3 3.8E-07 8.2E-12 102.0 2.9 150 49-214 447-627 (659)
453 PRK14737 gmk guanylate kinase; 98.3 4.1E-06 8.9E-11 82.8 9.9 160 65-243 3-171 (186)
454 cd03274 ABC_SMC4_euk Eukaryoti 98.3 1E-07 2.2E-12 95.8 -1.4 37 46-90 13-49 (212)
455 cd02019 NK Nucleoside/nucleoti 98.3 2.1E-06 4.6E-11 71.2 6.4 59 68-186 1-63 (69)
456 PRK04182 cytidylate kinase; Pr 98.2 4.4E-06 9.6E-11 80.1 9.1 23 68-90 2-24 (180)
457 PRK12269 bifunctional cytidyla 98.2 4.1E-06 8.9E-11 99.6 10.4 78 161-241 191-268 (863)
458 COG1245 Predicted ATPase, RNas 98.2 3.7E-07 8E-12 99.8 1.5 122 52-180 351-488 (591)
459 PRK05541 adenylylsulfate kinas 98.2 3.1E-06 6.7E-11 81.9 7.3 37 65-101 6-44 (176)
460 TIGR03263 guanyl_kin guanylate 98.2 5.4E-06 1.2E-10 80.1 8.7 24 68-91 3-26 (180)
461 TIGR03238 dnd_assoc_3 dnd syst 98.2 8.3E-07 1.8E-11 98.6 2.7 50 49-103 18-69 (504)
462 PRK00300 gmk guanylate kinase; 98.1 7.7E-06 1.7E-10 80.7 8.9 24 68-91 7-30 (205)
463 COG3954 PrkB Phosphoribulokina 98.1 9.7E-06 2.1E-10 80.2 9.1 170 66-237 5-205 (289)
464 KOG0066 eIF2-interacting prote 98.1 2E-06 4.3E-11 93.6 4.6 138 41-181 268-446 (807)
465 COG2401 ABC-type ATPase fused 98.1 1.2E-06 2.6E-11 94.9 3.0 149 46-207 392-561 (593)
466 cd03283 ABC_MutS-like MutS-lik 98.1 7.4E-07 1.6E-11 88.8 1.3 68 51-129 15-82 (199)
467 TIGR01360 aden_kin_iso1 adenyl 98.1 8.1E-06 1.8E-10 78.9 7.6 110 67-198 4-127 (188)
468 PRK04040 adenylate kinase; Pro 98.1 5.3E-06 1.1E-10 82.1 5.7 36 66-101 2-38 (188)
469 cd01130 VirB11-like_ATPase Typ 98.0 4.2E-05 9.2E-10 75.1 11.5 44 55-101 17-61 (186)
470 KOG0064 Peroxisomal long-chain 98.0 2.2E-06 4.7E-11 95.2 1.2 146 48-212 493-667 (728)
471 KOG0066 eIF2-interacting prote 98.0 3.2E-06 6.9E-11 92.0 2.0 132 42-180 591-737 (807)
472 PRK00349 uvrA excinuclease ABC 98.0 7.9E-06 1.7E-10 98.2 5.6 66 142-214 825-893 (943)
473 cd03273 ABC_SMC2_euk Eukaryoti 97.9 3.7E-06 8E-11 86.2 2.0 34 68-101 27-62 (251)
474 cd03276 ABC_SMC6_euk Eukaryoti 97.9 1.7E-05 3.7E-10 79.0 5.4 120 53-180 12-146 (198)
475 PRK08356 hypothetical protein; 97.9 2E-05 4.3E-10 77.9 5.8 34 66-101 5-38 (195)
476 COG0194 Gmk Guanylate kinase [ 97.8 9.7E-05 2.1E-09 73.0 10.0 153 67-240 5-167 (191)
477 PRK03846 adenylylsulfate kinas 97.8 2.9E-05 6.2E-10 77.0 6.4 39 64-102 22-62 (198)
478 KOG0065 Pleiotropic drug resis 97.8 2E-05 4.4E-10 95.5 6.0 129 49-180 127-293 (1391)
479 PRK05057 aroK shikimate kinase 97.8 3.2E-05 6.9E-10 75.3 5.9 32 68-100 6-37 (172)
480 PRK13949 shikimate kinase; Pro 97.7 1.8E-05 3.9E-10 76.9 2.9 33 68-101 3-35 (169)
481 cd07761 CYTH-like_CthTTM-like 97.7 0.00014 3E-09 69.4 8.7 82 296-383 32-116 (146)
482 KOG0062 ATPase component of AB 97.7 2.6E-05 5.7E-10 86.7 3.8 128 46-180 373-515 (582)
483 COG1245 Predicted ATPase, RNas 97.7 2.3E-05 4.9E-10 86.1 2.7 165 32-207 65-266 (591)
484 PF13238 AAA_18: AAA domain; P 97.7 1.1E-05 2.5E-10 72.4 0.3 22 69-90 1-22 (129)
485 COG3845 ABC-type uncharacteriz 97.6 0.00041 9E-09 77.1 11.9 158 38-205 258-454 (501)
486 PRK03839 putative kinase; Prov 97.6 0.00036 7.9E-09 67.7 9.8 34 68-102 2-35 (180)
487 KOG2355 Predicted ABC-type tra 97.6 5.4E-05 1.2E-09 76.0 3.8 50 49-101 26-76 (291)
488 COG1428 Deoxynucleoside kinase 97.5 0.00011 2.4E-09 73.9 5.5 56 177-237 126-185 (216)
489 TIGR01313 therm_gnt_kin carboh 97.5 0.00049 1.1E-08 65.5 9.9 32 69-101 1-32 (163)
490 cd03275 ABC_SMC1_euk Eukaryoti 97.5 4.1E-05 8.9E-10 78.5 2.2 29 68-96 24-53 (247)
491 PRK09825 idnK D-gluconate kina 97.5 0.00016 3.4E-09 70.9 6.1 57 68-127 5-67 (176)
492 PRK00635 excinuclease ABC subu 97.5 0.00011 2.4E-09 92.8 6.1 66 142-214 804-872 (1809)
493 smart00072 GuKc Guanylate kina 97.5 0.00078 1.7E-08 66.0 10.8 160 67-240 3-167 (184)
494 PRK00131 aroK shikimate kinase 97.5 0.00012 2.6E-09 69.6 4.6 33 66-99 4-36 (175)
495 PF00625 Guanylate_kin: Guanyl 97.5 0.00034 7.4E-09 68.3 7.9 26 67-92 3-28 (183)
496 PRK07196 fliI flagellum-specif 97.5 0.00018 3.9E-09 79.9 6.5 76 50-129 143-235 (434)
497 PLN02200 adenylate kinase fami 97.4 0.00045 9.7E-09 70.8 8.7 37 64-101 41-77 (234)
498 cd07374 CYTH-like_Pase CYTH-li 97.3 0.00071 1.5E-08 65.6 8.0 99 278-382 32-156 (174)
499 cd01428 ADK Adenylate kinase ( 97.3 0.00075 1.6E-08 65.6 7.8 32 69-101 2-33 (194)
500 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00067 1.4E-08 65.7 7.0 33 68-101 1-33 (183)
No 1
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=7e-168 Score=1378.95 Aligned_cols=625 Identities=84% Similarity=1.260 Sum_probs=609.0
Q ss_pred CcccCCCCCCCccccCcccchhhhhhhccCCCceeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHH
Q 006782 1 MAQDTSSGADSPRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKT 80 (631)
Q Consensus 1 ~~~~~~~~~~s~~r~~~l~~~~~~~v~~~~~~~~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKS 80 (631)
||+++ ++++|++|..+|+++|+++|+++.++.+++.++.++++|++|++.+++.+++..+...++++|||+||||||||
T Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKT 79 (656)
T PLN02318 1 MAQDT-SGAESPRRRHGLLKDQVQLVKRKDSDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKT 79 (656)
T ss_pred CCccc-ccCcCcccccchhHHhhhheeeccCCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHH
Confidence 89999 88999999999999999999999999999999999999999999999999998887778899999999999999
Q ss_pred HHHHHHHHhCCCceEEEECCccccccccccccCCCCCCchhhHHHHHHHhhccccccccccccccccccCceeeeecCcc
Q 006782 81 VFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSR 160 (631)
Q Consensus 81 TLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~ 160 (631)
||++.|++.+|.++.|++|+|+.....++++||+|.++++.++.++|..++.|+.+..|.|||..+.+.+.....+++.+
T Consensus 80 TLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~ 159 (656)
T PLN02318 80 VFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSR 159 (656)
T ss_pred HHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCc
Confidence 99999999998899999999976555678899999999999999999999999999999999999988765567789999
Q ss_pred EEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCC
Q 006782 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (631)
Q Consensus 161 VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (631)
|||+||+|++++++++++|++|||++|.++++.||+.||+.++|+++++++++|.++++|+|..||+|++++||+||.|+
T Consensus 160 VVIVEGIyaL~~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~ 239 (656)
T PLN02318 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNK 239 (656)
T ss_pred EEEEechhhccHhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeeeccCCcccHHHHHHHhcccccccccceeeeecCCCCCCchhccceeeeeecCCEEEEEEeeeecCCC
Q 006782 241 FNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSP 320 (631)
Q Consensus 241 ~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~~~f~DIYl~pP~~d~~~tde~LRvR~~dg~~~LtykG~~~d~p 320 (631)
|+|++++.|++||+|+.+++.+++|+..|.+...+.+++|+||||+||++||+.|++|||+|+++|+|.|||++|++|+|
T Consensus 240 f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~~~~~~~~~~DiYl~~P~~d~~~~~e~LRvR~~~Gk~~Ltyke~i~dgp 319 (656)
T PLN02318 240 FNPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDPETCQSYLRMRNRDGKYSLMFEEWVTDEP 319 (656)
T ss_pred CCCCCCCCCCeEEecCCccccHHHHHHHhhhccccccceeeEEEecCCCCCchhccceEEEEecCCEEEEEEecccccCC
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred eeecceeEeeeehhhHHHHhhcCCeEEEEEEeeeeEeecCcEEEEeecccccCcceEEEEeccHHHHHHHHHHcCCCCCc
Q 006782 321 FIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRDRLYVKYVGEQLGLDGSY 400 (631)
Q Consensus 321 ~isrp~~ef~V~v~il~GL~~LGy~~~a~v~k~re~y~~~~~~i~lD~ve~Lg~~FveI~g~~~~~v~~~~~~Lgl~g~~ 400 (631)
||++|+..|+|++++++||++|||+++|+|+|+|++|.+|+++|++|||||||++||||+|.+|+.|.++|++|||+|+|
T Consensus 320 ~ii~pk~~fEv~v~~~~gL~aLGy~~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~ 399 (656)
T PLN02318 320 FIISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSY 399 (656)
T ss_pred eecCcceeEEEeeehHhHHHHcCCceEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cchhhHHHHHHhhhcccccCCChhhhhccccCcccccCchhhhhhhhhhhhhcccccccccccccccccccccccccccc
Q 006782 401 VPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRTKYLSRSISNSFSNQREKNLTKLARVAVN 480 (631)
Q Consensus 401 i~kSYLEli~lek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (631)
||+||||||||||+++++|+||||||+|||+|+++|+||||||+|||||||+|++++|||||||+||+||++||++++++
T Consensus 400 i~~SYlE~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (656)
T PLN02318 400 IPRTYIEQIQLEKLVNEVMALPEDLKTKLSLDDDLVSSPKEALSRASADRRNKNLKSGLSHSYSTQRDKNLSKLTGLAVT 479 (656)
T ss_pred ccccHHHHHHHHHhHHHHhhccHHhhhhcccccccccCcHHHhhhhhhhhhhhhcccCcccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcccccchhHHHHHHHHhhHhHhHHHHHHHHHHhhhcccccccCcccccccccccccCCCCCcceeecc
Q 006782 481 NRRFDGRTPESPASLANQGVINQLSEQISTLNERMDEFTSRIEEMNTKFAIRKVSASQQNLALQAEACNGSGPTSLFMTG 560 (631)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (631)
+|+||+|++++||++ |||+|+|||||||+|||||||||||||||||||+++|+||||||+|+|+|+||||||||||++|
T Consensus 480 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (656)
T PLN02318 480 NRRFDERNSESPAAL-NQGAITQLSEQISSLNERMDEFTSRIEELNSKLSIKKNSPSQQNLALQAEACNGSAPTSYFVSG 558 (656)
T ss_pred ccccCCCCCCCchhh-ccchHHHHHHhhcchhhhhHHHHHHHHHHhhccccccCChhhhhhhccccccCCCCcchhhhcc
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCCCCcccccccchhHHHHHHHhhhhHHHHHhHhHHHHHHHHhhhccchhccccCC
Q 006782 561 LANGSLTGSVLPNSSSSSQLARESPLMEEVLLVARGQRQIMHQLDSISNLLHEYWGERTRQERTDRP 627 (631)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (631)
++||+||||+||+|||||||++|+||||||..++|||||||||||+|+|||||++|||++..++++.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (656)
T PLN02318 559 LGNGSLTGSILPLSSSSSQLAKESPLMEEILGIARGQRQVMHQLDNLSNLLHESLGERSGRNRRNSR 625 (656)
T ss_pred CCCcccccccccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999988877543
No 2
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=288.22 Aligned_cols=182 Identities=37% Similarity=0.656 Sum_probs=167.1
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhCC--CceEEEECCccccc------cccccccCCCCCCchhhHHHHHHHhhcccc
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKA 135 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~llp--~~G~I~lDg~~~~~------~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~ 135 (631)
+++++|||+|+|||||||+++.|...++ ....|+.|+|+... ....++|++|.+||++.+.++|..|+.|+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 5568999999999999999999999994 67899999997643 235689999999999999999999999999
Q ss_pred ccccccccccccccCceeeeecCccEEEEeechhccc-cccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 006782 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (631)
Q Consensus 136 I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d-El~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~ 214 (631)
+..|.||+.+|.+.. ++..+.+.+|||+||+++|.| ++++.+|++|||++|.|+|++||+.||+.+||++++.+++||
T Consensus 86 v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy 164 (218)
T COG0572 86 VDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred ccccccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999976 677889999999999999997 899999999999999999999999999999999999999999
Q ss_pred HhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCcee
Q 006782 215 SETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTY 252 (631)
Q Consensus 215 ~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~ 252 (631)
...++|||++||+|++++||+||+ .+..|.++
T Consensus 165 ~~~vkp~~~~fIeptk~~ADiiip------~~~~n~va 196 (218)
T COG0572 165 VKTVRPMYEQFIEPTKKYADIIIP------SGGKNEVA 196 (218)
T ss_pred HHhhChhhhhccCcccccceEEee------cCCcceee
Confidence 999999999999999999999997 44456553
No 3
>PTZ00301 uridine kinase; Provisional
Probab=99.96 E-value=2.4e-29 Score=251.76 Aligned_cols=175 Identities=31% Similarity=0.528 Sum_probs=155.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC-----CC-ceEEEECCccccccc------cccccCCCCCCchhhHHHHHHHhhcc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM-----PS-IAVITMDNYNDSSRI------IDGNFDDPRLTDYDTLLENIRGLKEG 133 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll-----p~-~G~I~lDg~~~~~~~------i~~vfq~p~l~d~~tl~e~L~~L~~g 133 (631)
.++|||+|+||||||||++.|...+ +. ...+.+|+|+..... -.+.|++|.+||...+.+.|..++.|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 4799999999999999999887543 32 447788999754321 13689999999999999999999999
Q ss_pred ccccccccccccccccCceeeeecCccEEEEeechhcc-ccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHH
Q 006782 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (631)
Q Consensus 134 ~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~-dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~ 212 (631)
+.+..|.||+..+.+.. ....+.+.+|+|+||+|+++ +++++++|++|||+++.++++.||+.||+.++|++++++++
T Consensus 83 ~~i~~P~yd~~~~~~~~-~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSD-TAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred CcccCCCcccccCCcCC-ceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 99999999999988875 55678888999999999985 68999999999999999999999999999999999999999
Q ss_pred HHHhccccchhhcccCCCCCCeEEEeCCC
Q 006782 213 QISETVYPMYKAFIEPDLQTAHIKIINKF 241 (631)
Q Consensus 213 q~~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (631)
+|.+++.|++.+||+|++.+||+||++..
T Consensus 162 ~~~~~v~~~~~~~I~p~k~~ADiIi~~~~ 190 (210)
T PTZ00301 162 QYEATVRPMYYAYVEPSKVYADIIVPSWK 190 (210)
T ss_pred HHHHhhcccHHHHcCccccCCcEEEcCCC
Confidence 99999999999999999999999997543
No 4
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.95 E-value=3.3e-28 Score=239.33 Aligned_cols=171 Identities=36% Similarity=0.674 Sum_probs=145.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC--C------ceEEEECCccccc--------cccccccCCCCCCchhhHHHHHHHhh
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMP--S------IAVITMDNYNDSS--------RIIDGNFDDPRLTDYDTLLENIRGLK 131 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp--~------~G~I~lDg~~~~~--------~~i~~vfq~p~l~d~~tl~e~L~~L~ 131 (631)
||||.||+|||||||++.|...+. + .+.+.+|+++... ..-.+.|++|..++...+.++|..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 699999999999999999999883 1 4567788875321 11246788999999999999999999
Q ss_pred ccccccccccccccccccCceeeeecCccEEEEeechhccc-cccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHH
Q 006782 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (631)
Q Consensus 132 ~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d-El~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~V 210 (631)
+|+.+..|.|++..+.+.+ ......+.+|||+||+|++++ ++++++|++|||+++.++++.||+.||+.+||++++++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCccccccccccccccee-eeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 9999999999999988776 445567889999999999985 68999999999999999999999999999999999999
Q ss_pred HHHHHhccccchhhcccCCCCCCeEEEeCC
Q 006782 211 IHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (631)
Q Consensus 211 i~q~~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (631)
+++|. .++|+|.+||+|+++.||+||++.
T Consensus 160 ~~~~~-~~~~~~~~~I~p~~~~ADivi~~~ 188 (194)
T PF00485_consen 160 IAQYE-RVRPGYERYIEPQKERADIVIPSG 188 (194)
T ss_dssp HHHHH-THHHHHHHCTGGGGGG-SEEEESC
T ss_pred EEEee-cCChhhhhheeccccccEEEECCC
Confidence 99998 999999999999999999999754
No 5
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7e-30 Score=263.56 Aligned_cols=268 Identities=19% Similarity=0.219 Sum_probs=214.5
Q ss_pred ceeeeeccceeEe-ecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------
Q 006782 33 RYEIVPIEDTLSF-EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (631)
Q Consensus 33 ~~ei~~v~~~ls~-~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------ 104 (631)
|+++..+++.|.. ..+...++++|||++++|+ |+||+|.||||||||+|++.++. |+.|.|.+||.+..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~Ge---I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGE---IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCc---EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHH
Confidence 4566677777754 2345789999999999999 99999999999999999999998 99999999996432
Q ss_pred ----ccccccccCCCCCCchhhHHHHHHHhhccc-----cc-----------ccc-ccccccccccCceeeeecCccEEE
Q 006782 105 ----SRIIDGNFDDPRLTDYDTLLENIRGLKEGK-----AV-----------QVP-IYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 105 ----~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~-----~I-----------~~P-vyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
++.++++|||++++...|+++|++...+-. .+ ..+ .-+....+.++|++++++.++++.
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh
Confidence 257999999999999999999998754311 11 111 123334678999999999999999
Q ss_pred EeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
.+|.++|+||.++.+|+. ++...+.++++|.|.. |.|+..|+|++ |+|
T Consensus 158 ~~P~iLL~DEaTSALDP~---TT~sIL~LL~~In~~l---glTIvlITHEm-------------------~Vv------- 205 (339)
T COG1135 158 NNPKILLCDEATSALDPE---TTQSILELLKDINREL---GLTIVLITHEM-------------------EVV------- 205 (339)
T ss_pred cCCCEEEecCccccCChH---HHHHHHHHHHHHHHHc---CCEEEEEechH-------------------HHH-------
Confidence 999999999999999998 7777778888887765 98988888887 555
Q ss_pred CCCCCCceeeeccCCcccHHHHHHHhcccccccccceeeeecCCCCCCchhccceeeeeecCCEEEEEEeeeecCCCeee
Q 006782 244 FTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFII 323 (631)
Q Consensus 244 ~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~~~f~DIYl~pP~~d~~~tde~LRvR~~dg~~~LtykG~~~d~p~is 323 (631)
+.+||+|++|..|+.++.+.+.++|.++....+++|..--..+. .++...+-+. ...+..+.|+|.|...+.|.++
T Consensus 206 -k~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~~~~~~--~~~~~~~~l~-~~~~~~~rl~f~g~~~~~plis 281 (339)
T COG1135 206 -KRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEFIGETLEID--LPEELLERLE-SGDGPLLRLTFTGESADQPLLS 281 (339)
T ss_pred -HHHhhhheEeeCCEEEEeccHHHhhcCcchHHHHHHHHhhcccc--CcHHHHhhhc-cCCceEEEEEecCccccchHHH
Confidence 78999999999999999999999999999999998883222110 0111111121 1223489999999999999999
Q ss_pred cceeEeeeehhhHHHH
Q 006782 324 SPRITFEVSVRLLGGL 339 (631)
Q Consensus 324 rp~~ef~V~v~il~GL 339 (631)
+..+.|+|+++|++|=
T Consensus 282 ~~~~~~~v~~nIl~G~ 297 (339)
T COG1135 282 EVARRFGVDVNILSGN 297 (339)
T ss_pred HHHHHhCCceEEEecc
Confidence 9999999999997763
No 6
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.94 E-value=9.1e-27 Score=239.03 Aligned_cols=169 Identities=21% Similarity=0.324 Sum_probs=147.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC----CceEEEECCcccccc-----------ccccccCC--CCCCchhhHHHHHHHh
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSR-----------IIDGNFDD--PRLTDYDTLLENIRGL 130 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp----~~G~I~lDg~~~~~~-----------~i~~vfq~--p~l~d~~tl~e~L~~L 130 (631)
+|||+|+|||||||+++.|...+. ....|..|+|+...+ ..+.+|+| |.++++..+.+.+..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999998772 467899999876321 13579999 9999999999999999
Q ss_pred hccccccccccccc----------cccccCceeeeecCccEEEEeechhcc----ccccCCCcEEEEEEcChhhHHHHHH
Q 006782 131 KEGKAVQVPIYDFK----------SSSRIGYRTLEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKRV 196 (631)
Q Consensus 131 ~~g~~I~~Pvyd~~----------~~~rs~~~~~~v~~a~VLIvEGi~lL~----dEl~~~lDlkIfVdad~d~rLiRRI 196 (631)
++|+.+..|.|++. .+.+..++ ....++++|++||++.+. .++++++|++|||+++.+++++||+
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~-~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI 159 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE-DLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI 159 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCcc-cccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence 99999999999873 23343322 235789999999999543 4899999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEe
Q 006782 197 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (631)
Q Consensus 197 ~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~ 238 (631)
.||+.+||++.+.|+++|..++ |+|.+||+|++.+|||+|.
T Consensus 160 ~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fq 200 (277)
T cd02029 160 HRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQ 200 (277)
T ss_pred HhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEe
Confidence 9999999999999999999998 9999999999999999985
No 7
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=99.93 E-value=2.2e-25 Score=214.80 Aligned_cols=150 Identities=26% Similarity=0.385 Sum_probs=134.2
Q ss_pred HHHHHHHhcccccc--cccceeeeecCCCCCCchhccceeeee-ecCCEEEEEEeeeecCCCeeecceeEeeee--hhhH
Q 006782 262 VDEIKAVMSKEHTE--TTEETYDIYLLPPGEDPDACQSYLRMR-NRDGKYNLMFEEWVTDSPFIISPRITFEVS--VRLL 336 (631)
Q Consensus 262 ~~~Ik~vL~~~~~~--~~~~f~DIYl~pP~~d~~~tde~LRvR-~~dg~~~LtykG~~~d~p~isrp~~ef~V~--v~il 336 (631)
...+++.|.+.+.. ....+.|+||.+|++||+.++++||+| ..+|.+.||||||+++.+.+++.++++.|+ -...
T Consensus 13 ~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~k~r~E~E~~v~D~~~~~ 92 (178)
T COG1437 13 LEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRINGGEVFLTYKGPKLDRESKTREEIEIEVSDVEKAL 92 (178)
T ss_pred HHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecCCcEEEEEecccccccccceeeEEEEeCCHHHHH
Confidence 47788888876543 344566999999999999999999999 778999999999999999999999999997 7778
Q ss_pred HHHhhcCCeEEEEEEeeeeEeecCcEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCC-CCccchhhH
Q 006782 337 GGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLD-GSYVPRTYI 406 (631)
Q Consensus 337 ~GL~~LGy~~~a~v~k~re~y~~~~~~i~lD~ve~Lg~~FveI~g~---------~~~~v~~~~~~Lgl~-g~~i~kSYL 406 (631)
..|.+|||..++.|+|.|++|..|+++|+||.|+||| +|+||+-. +++.+.+++.+|||. ++.+++|||
T Consensus 93 ~il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~VegLG-~F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sYl 171 (178)
T COG1437 93 EILKRLGFKEVAVVKKTREIYKVGNVTIELDAVEGLG-DFLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSYL 171 (178)
T ss_pred HHHHHcCCceeeEEEEEEEEEeeCCEEEEEecccCCc-ccEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhHH
Confidence 8889999999999999999999999999999999999 99999443 567899999999997 799999999
Q ss_pred HHHHHhh
Q 006782 407 EQIQLEK 413 (631)
Q Consensus 407 Eli~lek 413 (631)
||+ +++
T Consensus 172 ELl-~~~ 177 (178)
T COG1437 172 ELL-LEK 177 (178)
T ss_pred HHH-hcc
Confidence 999 543
No 8
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.93 E-value=1.3e-25 Score=226.21 Aligned_cols=174 Identities=20% Similarity=0.303 Sum_probs=145.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccccc---cccc--ccCCCCCCchhhHHHHHHHhhc-ccc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDSSR---IIDG--NFDDPRLTDYDTLLENIRGLKE-GKA 135 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~~~---~i~~--vfq~p~l~d~~tl~e~L~~L~~-g~~ 135 (631)
+|||+|+||||||||++.|++.+ + .+..|++|+|+.... ..+. .+..|..++...+.+.|..++. ++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 58999999999999999999987 2 356788899975432 1222 2446788998899999999998 478
Q ss_pred ccccccccccccccCceeeeecCccEEEEeechhcccc------ccCCCcEEEEEEcChhhH---HHHHHHHHHHHhCCC
Q 006782 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK------LRPLIDLRVSVTGGVHFD---LVKRVFRDIQRVGQE 206 (631)
Q Consensus 136 I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dE------l~~~lDlkIfVdad~d~r---LiRRI~RDv~erG~s 206 (631)
+..|.||+..+.+.......+.+.+|||+||+++|+++ +++++|++|||++|.+++ +++|..|++.++|++
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~ 160 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSD 160 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999887755545788899999999999874 899999999999999985 778888888888888
Q ss_pred HHHHHHH----------------HHhccccchhhcccCCCCCCeEEEeCCC
Q 006782 207 PEEIIHQ----------------ISETVYPMYKAFIEPDLQTAHIKIINKF 241 (631)
Q Consensus 207 ~e~Vi~q----------------~~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (631)
+..+++| |.+.++|++++||.|++++||+||+.+.
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~ 211 (220)
T cd02025 161 PDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGA 211 (220)
T ss_pred chhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCC
Confidence 8876654 7779999999999999999999997543
No 9
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.93 E-value=9.3e-27 Score=257.07 Aligned_cols=398 Identities=24% Similarity=0.305 Sum_probs=319.6
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHHhCC---------CceEEEECCcccc-------cccc-ccccCCCCCCchhhHH
Q 006782 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMP---------SIAVITMDNYNDS-------SRII-DGNFDDPRLTDYDTLL 124 (631)
Q Consensus 62 ~gekp~IIGI~GpsGSGKSTLlr~L~~llp---------~~G~I~lDg~~~~-------~~~i-~~vfq~p~l~d~~tl~ 124 (631)
.+..|+++||.|++++||||++..+...+. ..-.++.|-++.. .... .++|++|+.|++.++.
T Consensus 40 ~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~ 119 (473)
T KOG4203|consen 40 EGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLY 119 (473)
T ss_pred cCcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHH
Confidence 456789999999999999998887776652 1222222222211 0122 4899999999999999
Q ss_pred HHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccc-cccCCCcEEEEEEcChhhHHHHHHHHHHHHh
Q 006782 125 ENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV 203 (631)
Q Consensus 125 e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d-El~~~lDlkIfVdad~d~rLiRRI~RDv~er 203 (631)
..+..+.++..+..|.|++.++.+...+...+.+++++++||+++++| +.++++|.++|||++.+.++.||+.|++.++
T Consensus 120 ~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~ 199 (473)
T KOG4203|consen 120 LTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVER 199 (473)
T ss_pred HHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhh
Confidence 999999999999999999999999776778899999999999999995 7999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCcccHHHHHHHhcccccccccceeee
Q 006782 204 GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDI 283 (631)
Q Consensus 204 G~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~~~f~DI 283 (631)
|++++.+..||..+++|+|..||+|++++||++|+ ++..|.++ .+....+++..|......
T Consensus 200 g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~------~~~~n~va-----i~l~~~~i~~~L~~~~~~-------- 260 (473)
T KOG4203|consen 200 GRDLESILTQYSTFVKPAFEEFILPTKKYADVIIP------RGGDNDVA-----IDLIVQHILSILAEKSYV-------- 260 (473)
T ss_pred cccHHHHHHHHHhhcCchHHHHhhHHHHhhhheee------cccccccc-----ceeeehhhhhhhhccccc--------
Confidence 99999999999999999999999999999999997 33444332 222223333333211000
Q ss_pred ecCCCCCCchhccceeeeeecCCEEEEEEeeeecCCCeeecceeEeeeehhhHHHHhhcCCeEEEEEEeeeeEeecCcEE
Q 006782 284 YLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVC 363 (631)
Q Consensus 284 Yl~pP~~d~~~tde~LRvR~~dg~~~LtykG~~~d~p~isrp~~ef~V~v~il~GL~~LGy~~~a~v~k~re~y~~~~~~ 363 (631)
T Consensus 261 -------------------------------------------------------------------------------- 260 (473)
T KOG4203|consen 261 -------------------------------------------------------------------------------- 260 (473)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecccccCcceEEEEeccHHHHHHHHHHcCCCCCccchhhHHHHHHhhhcccccCCCh--hhhhccccCcccccC--c
Q 006782 364 VKTDWLEQLNRKYVQVQGRDRLYVKYVGEQLGLDGSYVPRTYIEQIQLEKLVNDVMALPD--DLKTKLSIDDDLVSS--P 439 (631)
Q Consensus 364 i~lD~ve~Lg~~FveI~g~~~~~v~~~~~~Lgl~g~~i~kSYLEli~lek~~~~~~~~~~--~~~~~~~~~~~~~~~--~ 439 (631)
++.+.++.+|+ +++.+++...+...+ |
T Consensus 261 -------------------------------------------------~l~~~~~~l~~t~~i~~~~t~~~~~~Ts~~~ 291 (473)
T KOG4203|consen 261 -------------------------------------------------RLYNNVLSLPDTNQIKGKLTLLRDHTTSRHP 291 (473)
T ss_pred -------------------------------------------------cccccceecCCccccCCceeEeecCCcCCCC
Confidence 55566677777 889998776666655 4
Q ss_pred hhhhhhhhhhhhhccccccccccccccccccccccccccccccccCCCCCCCCcccccchhHHHHHHHHhhHhHhHHHHH
Q 006782 440 KEALSRASADRRTKYLSRSISNSFSNQREKNLTKLARVAVNNRRFDGRTPESPASLANQGVINQLSEQISTLNERMDEFT 519 (631)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (631)
....+...+ |+++.+.+.++.|...+.+.+.+++....+.. +...+...|..--+.+.+.+.+.+ +.||++++
T Consensus 292 ~~~~~~~~v--rl~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~-~~i~gv~i~r~g~~~~~alr~~~~----~vri~~il 364 (473)
T KOG4203|consen 292 FSFYSDHLV--RLVLEHGLGHLPYTEKRIVTPRGLAYSGVNFC-KQICGVSIPRSGESMETALRAACK----GVRIGKIL 364 (473)
T ss_pred HHHHHHHHH--HHHhhcccCcccceeeeEecccccchhccccc-chhccCCCCcchhHHHHHHHHHcC----CceeeeeE
Confidence 444433333 59999999999999999999999999998888 777777777755555555555555 99999999
Q ss_pred H-HHHHhhhcccccccCccccccc---ccccccCCCCCcceeecccCCCccccccccCCCCcccccccchhHHHHHHHhh
Q 006782 520 S-RIEEMNTKFAIRKVSASQQNLA---LQAEACNGSGPTSLFMTGLANGSLTGSVLPNSSSSSQLARESPLMEEVLLVAR 595 (631)
Q Consensus 520 ~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (631)
. |.++...+-......|.+++.- +.+..|||.++...|...+.+| ++...+...+|....+.++|+....+
T Consensus 365 ~qr~~~t~~~~l~~~~lP~~is~~V~ll~p~~~tg~~~~~a~~~ll~~g-----v~~~~i~~~~ll~~~~~~~~~~~~f~ 439 (473)
T KOG4203|consen 365 IQRDEETGEPELHYEKLPKDISDRVLLLDPVLATGNSAMMAIILLLDHG-----VPEENIIFLNLLAAPQGIHEVAYAFP 439 (473)
T ss_pred eechhhccchhhhhhhCccccccceeeecchhhcchhHHHHHHHHHhCC-----CcHHHhHHHHHHhhhhhhhHHHHhcc
Confidence 9 9999888666666777777777 8888999999999999999999 56778888999999999999999999
Q ss_pred hhHHHHHhHhHHHHHHHHhhhccc
Q 006782 596 GQRQIMHQLDSISNLLHEYWGERT 619 (631)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~ 619 (631)
+++++++|+|...|..+....+..
T Consensus 440 ~v~~v~~~~d~~~~~~~~~~pg~g 463 (473)
T KOG4203|consen 440 KVKIVTSQIDKLLNEKRYVVPGLG 463 (473)
T ss_pred cceeehhhhcccccccceECcccc
Confidence 999999999999998877665544
No 10
>PLN02348 phosphoribulokinase
Probab=99.92 E-value=6.5e-25 Score=235.82 Aligned_cols=175 Identities=27% Similarity=0.493 Sum_probs=152.8
Q ss_pred ccCCccEEEEEECCCCCcHHHHHHHHHHhCC-------------------CceEEEECCcccccc----ccccccCCCCC
Q 006782 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-------------------SIAVITMDNYNDSSR----IIDGNFDDPRL 117 (631)
Q Consensus 61 ~~gekp~IIGI~GpsGSGKSTLlr~L~~llp-------------------~~G~I~lDg~~~~~~----~i~~vfq~p~l 117 (631)
...+++++|||.|+||||||||++.|...+. .+..|++|+|+...+ ..+..+.+|..
T Consensus 44 ~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a 123 (395)
T PLN02348 44 AADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRA 123 (395)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCccc
Confidence 3446789999999999999999999999872 134799999975432 23555677888
Q ss_pred CchhhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccc-cccCCCcEEEEEEcChhhHHHHHH
Q 006782 118 TDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRV 196 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d-El~~~lDlkIfVdad~d~rLiRRI 196 (631)
++++.+.+.|..|+.|+.+.+|.||+.++..... ..+.+.++||+||++++++ .+++.+|++|||+++.++++.||+
T Consensus 124 ~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~--e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI 201 (395)
T PLN02348 124 NNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPP--ELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKI 201 (395)
T ss_pred ccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCc--EEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999876553 3578899999999999986 699999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEe
Q 006782 197 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (631)
Q Consensus 197 ~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~ 238 (631)
+||+.++|++.+++.++|. .++|+|.+||+|.+++||+||.
T Consensus 202 ~RD~~eRG~S~EeV~~~i~-ar~pd~~~yI~pqk~~ADiVI~ 242 (395)
T PLN02348 202 QRDMAERGHSLESIKASIE-ARKPDFDAYIDPQKQYADVVIE 242 (395)
T ss_pred HhhHhhcCCCHHHHHHHHH-hcCcchhhhcccccccCCEEEE
Confidence 9999999999999999985 6799999999999999999994
No 11
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.92 E-value=4.1e-25 Score=215.72 Aligned_cols=169 Identities=46% Similarity=0.741 Sum_probs=147.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC----CCceEEEECCccccc---cccccccCCCCCCchhhHHHHHHHhhccccccccc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDSS---RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 140 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll----p~~G~I~lDg~~~~~---~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pv 140 (631)
+|||.|++|||||||++.|...+ +....|++|+|+... ......++++..++...+.++|..+++++.+..|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999986 356789999997632 23346788888899999999999999999999999
Q ss_pred cccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhh-HHHHHHHHHHHHhCCCHHHHHHHHHhccc
Q 006782 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF-DLVKRVFRDIQRVGQEPEEIIHQISETVY 219 (631)
Q Consensus 141 yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~-rLiRRI~RDv~erG~s~e~Vi~q~~~~v~ 219 (631)
||+.++.+.+.....+.+.++||+||++++++++++++|++|||+++.++ |+.||+.||+.+||++.++++++| . ..
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~-~-~~ 158 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMW-P-SV 158 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhc-c-cc
Confidence 99999988765456788999999999999999999999999999999998 999999999999999999999996 3 45
Q ss_pred cchhhc-ccCCCCCCeEEEe
Q 006782 220 PMYKAF-IEPDLQTAHIKII 238 (631)
Q Consensus 220 P~~~~f-IeP~k~~ADiII~ 238 (631)
|+++.| +.|+++.||+|++
T Consensus 159 ~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 159 PSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred cCchhhcCCCchhccceecc
Confidence 666655 5679999999974
No 12
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.92 E-value=5.7e-25 Score=218.24 Aligned_cols=179 Identities=36% Similarity=0.611 Sum_probs=158.1
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC--CCceEEEECCccccc------cccccccCCCCCCchhhHHHHHHHhhcccc
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKA 135 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll--p~~G~I~lDg~~~~~------~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~ 135 (631)
.++.+|||+|+||||||||++.|.+.+ .....|++|+|+... ......|++|..++...+.+.|..+..+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 83 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKA 83 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCc
Confidence 356799999999999999999999998 456788999985432 123467889999999999999999999999
Q ss_pred ccccccccccccccCceeeeecCccEEEEeechhcc-ccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 006782 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (631)
Q Consensus 136 I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~-dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~ 214 (631)
+..|.|++..+.+.. ....+.+.+++|+||++++. +++.+.+|.+|||++|.++++.|++.|+...+|.+.+++.++|
T Consensus 84 v~~p~~d~~~~~~~~-~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~ 162 (209)
T PRK05480 84 IEIPVYDYTEHTRSK-ETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQY 162 (209)
T ss_pred cccCcccccccccCC-CeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHH
Confidence 999999999987765 44556778899999999997 6889999999999999999999999999999999999999999
Q ss_pred HhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 215 SETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 215 ~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
...+.|.|..|++|.++.||+||.|+.++
T Consensus 163 ~~~~~~~~~~~i~~~~~~AD~vI~~~~~~ 191 (209)
T PRK05480 163 LSTVRPMHLQFIEPSKRYADIIIPEGGKN 191 (209)
T ss_pred HHhhhhhHHhhccHhhcceeEEecCCCcc
Confidence 99999999999999999999999887533
No 13
>PRK15453 phosphoribulokinase; Provisional
Probab=99.92 E-value=2.4e-24 Score=222.71 Aligned_cols=173 Identities=20% Similarity=0.338 Sum_probs=145.1
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhCC----CceEEEECCcccccc-----------ccccccCC--CCCCchhhHHHHH
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSR-----------IIDGNFDD--PRLTDYDTLLENI 127 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~llp----~~G~I~lDg~~~~~~-----------~i~~vfq~--p~l~d~~tl~e~L 127 (631)
++.+|||+|+|||||||+++.|+..+. ....|..|+|+...+ .-+.+|++ |.++++..+.+++
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l 83 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLF 83 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHH
Confidence 457999999999999999999998772 356788999875221 12458998 9999999999999
Q ss_pred HHhhccccccccccccc-----cccccCce---eeee-cCccEEEEeechhcc----ccccCCCcEEEEEEcChhhHHHH
Q 006782 128 RGLKEGKAVQVPIYDFK-----SSSRIGYR---TLEV-PSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVK 194 (631)
Q Consensus 128 ~~L~~g~~I~~Pvyd~~-----~~~rs~~~---~~~v-~~a~VLIvEGi~lL~----dEl~~~lDlkIfVdad~d~rLiR 194 (631)
..++++..+..|.|++. .+.+..+. ...+ ++.++|++||++.+. .+++.++|++|||+++.+++++|
T Consensus 84 ~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~ir 163 (290)
T PRK15453 84 REYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWIQ 163 (290)
T ss_pred HHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHHH
Confidence 99999998888888643 23333222 1233 579999999999874 36899999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEe
Q 006782 195 RVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (631)
Q Consensus 195 RI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~ 238 (631)
|+.||+.+||++.|.|+++|..++ |+|.+||.|++.+|||++.
T Consensus 164 RI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 164 KIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQ 206 (290)
T ss_pred HHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEE
Confidence 999999999999999999999885 9999999999999999874
No 14
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.91 E-value=6.5e-24 Score=210.89 Aligned_cols=176 Identities=36% Similarity=0.624 Sum_probs=156.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCC--CceEEEECCccccc------cccccccCCCCCCchhhHHHHHHHhhcccccc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ 137 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp--~~G~I~lDg~~~~~------~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~ 137 (631)
..+|||+|+||||||||++.|++.++ ..+.+.+|++.... ...+++|++|..++...+.+.|..+..|..+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~v~ 85 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGSPID 85 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCCCEe
Confidence 35999999999999999999999984 67899999985431 24577899999999999999999999999999
Q ss_pred ccccccccccccCceeeeecCccEEEEeechhcc-ccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 006782 138 VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISE 216 (631)
Q Consensus 138 ~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~-dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~ 216 (631)
.|.||+..+.+.. ....+.+.+++|+||.+++. ..+.+.+|.+|||+++.++++.|++.|+...+|++.+.+.++|..
T Consensus 86 ~p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~~~~ 164 (207)
T TIGR00235 86 VPVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRK 164 (207)
T ss_pred cccceeecCCCCC-ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 9999999877644 44567788999999999986 458889999999999999999999999999999999999999999
Q ss_pred ccccchhhcccCCCCCCeEEEeCCCC
Q 006782 217 TVYPMYKAFIEPDLQTAHIKIINKFN 242 (631)
Q Consensus 217 ~v~P~~~~fIeP~k~~ADiII~N~~~ 242 (631)
.++|+|..|++|.+..||+||.++.+
T Consensus 165 ~~~~~~~~~i~~~~~~Ad~vi~~~~~ 190 (207)
T TIGR00235 165 TVRPMYEQFVEPTKQYADLIIPEGGR 190 (207)
T ss_pred hhhhhHHHhCcccccccEEEEcCCCC
Confidence 99999999999999999999986543
No 15
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.91 E-value=1e-23 Score=205.33 Aligned_cols=147 Identities=19% Similarity=0.258 Sum_probs=132.1
Q ss_pred HHHHHHhccccccc--ccceeeeecCCCCCCchhccceeeeeecCCEEEEEEeeeecCCCeeecceeEeeee--hhhHHH
Q 006782 263 DEIKAVMSKEHTET--TEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVS--VRLLGG 338 (631)
Q Consensus 263 ~~Ik~vL~~~~~~~--~~~f~DIYl~pP~~d~~~tde~LRvR~~dg~~~LtykG~~~d~p~isrp~~ef~V~--v~il~G 338 (631)
+.+++.|...+... ...+.|+||.+|++++..++.|||+|..++.+.||||||..+..++++++.+++|+ ..+...
T Consensus 14 ~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~e~~v~d~~~~~~i 93 (174)
T TIGR00318 14 EKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEIEFKIEDIENALQI 93 (174)
T ss_pred HHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEEEEEECCHHHHHHH
Confidence 56777776654433 33456999999999999999999999998899999999999999999999999996 777788
Q ss_pred HhhcCCeEEEEEEeeeeEeecCcEEEEeecccccCcceEEEEecc---------HHHHHHHHHHcCCCCCccchhhHHHH
Q 006782 339 LMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD---------RLYVKYVGEQLGLDGSYVPRTYIEQI 409 (631)
Q Consensus 339 L~~LGy~~~a~v~k~re~y~~~~~~i~lD~ve~Lg~~FveI~g~~---------~~~v~~~~~~Lgl~g~~i~kSYLEli 409 (631)
|.+|||.+++.+.|.|++|..|+++|++|+|+||| .||||++.. ++.+.+++.+|||.++.+++||+||+
T Consensus 94 L~~LG~~~~~~v~K~R~~~~l~~~~i~lD~v~~lG-~FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell 172 (174)
T TIGR00318 94 LKKLGFKKVYEVIKKRRIYQTNELNVSIDDVEGLG-FFLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELL 172 (174)
T ss_pred HHHCCCeEEEEEEEEEEEEEECCEEEEEEccCCCc-cEEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHh
Confidence 99999999999999999999999999999999999 999998874 36899999999998899999999998
Q ss_pred H
Q 006782 410 Q 410 (631)
Q Consensus 410 ~ 410 (631)
.
T Consensus 173 ~ 173 (174)
T TIGR00318 173 S 173 (174)
T ss_pred h
Confidence 3
No 16
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.90 E-value=2.6e-23 Score=217.26 Aligned_cols=179 Identities=20% Similarity=0.254 Sum_probs=144.3
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHHhC---CC---ceEEEECCcccccc---ccc--cccCCCCCCchhhHHHHHHHhh
Q 006782 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM---PS---IAVITMDNYNDSSR---IID--GNFDDPRLTDYDTLLENIRGLK 131 (631)
Q Consensus 63 gekp~IIGI~GpsGSGKSTLlr~L~~ll---p~---~G~I~lDg~~~~~~---~i~--~vfq~p~l~d~~tl~e~L~~L~ 131 (631)
...|++|||+|||||||||++++|.+++ |+ +..+.+|+|+.... ..+ ..+..|..++...+.+.+..++
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 4668999999999999999999998887 33 34578899875431 122 2456688899989999999999
Q ss_pred cccc-ccccccccccccccCceeeeecCccEEEEeechhccc-c----------ccCCCcEEEEEEcChhhHHHHHHHHH
Q 006782 132 EGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-K----------LRPLIDLRVSVTGGVHFDLVKRVFRD 199 (631)
Q Consensus 132 ~g~~-I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d-E----------l~~~lDlkIfVdad~d~rLiRRI~RD 199 (631)
.|.. +..|.||+..+.+..+....+.+.+|||+||+++|.+ + +++++|++||||+|.+++..|++.|.
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~ 218 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRF 218 (290)
T ss_pred CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 9885 9999999999998876666678999999999999963 3 46999999999999999988878775
Q ss_pred HH--Hh-------------CCCHHH----HHHHHHhccccchhhcccCCCCCCeEEEeCCC
Q 006782 200 IQ--RV-------------GQEPEE----IIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (631)
Q Consensus 200 v~--er-------------G~s~e~----Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (631)
.. ++ |.+.++ +++.|.....|++.+||.|++.+||+||..+.
T Consensus 219 ~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~ 279 (290)
T TIGR00554 219 LKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGA 279 (290)
T ss_pred HHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCC
Confidence 42 22 444433 34567999999999999999999999997543
No 17
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.89 E-value=9.5e-23 Score=200.51 Aligned_cols=175 Identities=35% Similarity=0.646 Sum_probs=152.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC--CCceEEEECCccccc------cccccccCCCCCCchhhHHHHHHHhhcccccccc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 139 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll--p~~G~I~lDg~~~~~------~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~P 139 (631)
+|||+||+|||||||+++|.+.+ ..+..+.+|+|+... ......+++|..+++..+.+.|..+..+..+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999997 357889999986422 1234567888888888888999999999999999
Q ss_pred ccccccccccCceeeeecCccEEEEeechhcc-ccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhcc
Q 006782 140 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 218 (631)
Q Consensus 140 vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~-dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v 218 (631)
.|++..+.+.... ..+.+.+++|+||.+++. +.+.+.+|.+|||+++.++++.|++.|+..+||++.+++.++|....
T Consensus 81 ~~d~~~~~~~~~~-~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLKET-VTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccCCc-eecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 9999998876433 356778999999999997 57889999999999999999999999999899999999999999999
Q ss_pred ccchhhcccCCCCCCeEEEeCCCCC
Q 006782 219 YPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 219 ~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
.|.|..|++|.++.||+||.|+.++
T Consensus 160 ~~~~~~~i~~~~~~aD~ii~~~~~~ 184 (198)
T cd02023 160 KPMHEQFIEPTKRYADVIIPRGGDN 184 (198)
T ss_pred hhhHHHhCccchhceeEEECCCCCc
Confidence 9999999999999999999876544
No 18
>PRK05439 pantothenate kinase; Provisional
Probab=99.89 E-value=1.3e-22 Score=213.63 Aligned_cols=179 Identities=18% Similarity=0.250 Sum_probs=148.6
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHHhC------CCceEEEECCccccccc-----cccccCCCCCCchhhHHHHHHHh
Q 006782 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGL 130 (631)
Q Consensus 62 ~gekp~IIGI~GpsGSGKSTLlr~L~~ll------p~~G~I~lDg~~~~~~~-----i~~vfq~p~l~d~~tl~e~L~~L 130 (631)
....|++|||+|++||||||+++.|...+ +.+..|.+|||+..... .--.++.|..||...+.+.|..+
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHH
Confidence 44668999999999999999999999876 14789999999755321 11135678999999999999999
Q ss_pred hcccc-ccccccccccccccCceeeeecCccEEEEeechhcc-ccc------cCCCcEEEEEEcChhhHHHHHHHHHHHH
Q 006782 131 KEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKL------RPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (631)
Q Consensus 131 ~~g~~-I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~-dEl------~~~lDlkIfVdad~d~rLiRRI~RDv~e 202 (631)
+.|+. +..|.||+..+.+..++...+.+.+|||+||++++. ++. ++.+|++|||++|.+....|++.|.+..
T Consensus 162 k~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~l 241 (311)
T PRK05439 162 KSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKL 241 (311)
T ss_pred HcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHH
Confidence 99986 999999999999886666778899999999999985 455 8999999999999999877777777642
Q ss_pred ---------------hCCCHH----HHHHHHHhccccchhhcccCCCCCCeEEEeCC
Q 006782 203 ---------------VGQEPE----EIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (631)
Q Consensus 203 ---------------rG~s~e----~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (631)
.|.+.+ .+.++|...+.|++++||.|++.+||+||..+
T Consensus 242 r~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~ 298 (311)
T PRK05439 242 RETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKG 298 (311)
T ss_pred HHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCC
Confidence 355655 34556778999999999999999999999754
No 19
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.89 E-value=1.2e-22 Score=210.87 Aligned_cols=169 Identities=28% Similarity=0.533 Sum_probs=145.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC-CCce-EEEECCccccc----cccccccCCCCCCchhhHHHHHHHhhcccccccccc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYNDSS----RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll-p~~G-~I~lDg~~~~~----~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvy 141 (631)
+|||+|+||||||||++.|++++ +..+ .|.+|+++... ...++.+++|...+...+.+++..++.++.+.+|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 58999999999999999999998 4334 68888875422 235677778877777788999999999999999999
Q ss_pred ccccccccCceeeeecCccEEEEeechhccc-cccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhcccc
Q 006782 142 DFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYP 220 (631)
Q Consensus 142 d~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d-El~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P 220 (631)
++..+.... ...+.+.+++|+||.+++++ .+++.+|++|||+++.++++.|++.|++.++|.+.+++.++|. ..+|
T Consensus 81 ~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~-~r~~ 157 (273)
T cd02026 81 NHVTGLIDP--PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIE-ARKP 157 (273)
T ss_pred cccCCCcCC--cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHH-hhch
Confidence 999876543 23467789999999998864 8899999999999999999999999999999999999999996 4699
Q ss_pred chhhcccCCCCCCeEEEeC
Q 006782 221 MYKAFIEPDLQTAHIKIIN 239 (631)
Q Consensus 221 ~~~~fIeP~k~~ADiII~N 239 (631)
++.+||+|.+.+||+||..
T Consensus 158 ~~~~~I~P~~~~ADvVI~~ 176 (273)
T cd02026 158 DFEAYIDPQKQYADVVIQV 176 (273)
T ss_pred hHHHHhccccccCcEEEEc
Confidence 9999999999999999954
No 20
>PRK07429 phosphoribulokinase; Provisional
Probab=99.88 E-value=3.3e-22 Score=212.41 Aligned_cols=174 Identities=27% Similarity=0.490 Sum_probs=149.5
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHHhC-C-CceEEEECCccccc----cccccccCCCCCCchhhHHHHHHHhhccccc
Q 006782 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYNDSS----RIIDGNFDDPRLTDYDTLLENIRGLKEGKAV 136 (631)
Q Consensus 63 gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-~~G~I~lDg~~~~~----~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I 136 (631)
..++++|||+|+||||||||++.|++.+ + ....|.+|+++... +..++.+.+|...+...+.+++..++.++.+
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I 84 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI 84 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence 3568999999999999999999999998 3 35688999985322 2355666678888888899999999999999
Q ss_pred cccccccccccccCceeeeecCccEEEEeechhccc-cccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006782 137 QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (631)
Q Consensus 137 ~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d-El~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~ 215 (631)
..|.|++.++.... ...+.+.++||+||.+++.+ .+++.+|++|||+++.++++.|+++|++.++|.+.+++.++|.
T Consensus 85 ~~P~yd~~~g~~~~--~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~ 162 (327)
T PRK07429 85 LKPIYNHETGTFDP--PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIE 162 (327)
T ss_pred ecceeecCCCCcCC--cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 99999999887644 23567789999999997764 6789999999999999999999999999999999999998885
Q ss_pred hccccchhhcccCCCCCCeEEEeC
Q 006782 216 ETVYPMYKAFIEPDLQTAHIKIIN 239 (631)
Q Consensus 216 ~~v~P~~~~fIeP~k~~ADiII~N 239 (631)
..+|.+.+||+|.+..||+||.+
T Consensus 163 -~r~pd~~~yI~P~k~~ADiVI~~ 185 (327)
T PRK07429 163 -AREPDFEAYIRPQRQWADVVIQF 185 (327)
T ss_pred -HhCccHhhhhcccccCCCEEEEc
Confidence 56999999999999999999964
No 21
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=5.7e-23 Score=203.66 Aligned_cols=203 Identities=20% Similarity=0.221 Sum_probs=153.7
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------cccccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNF 112 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vf 112 (631)
++++.+|...||++|++.+.+|+ ++.|+||||||||||+|||.++. |+.|.|.+||.... ++++|++|
T Consensus 7 ~l~K~fg~~~VLkgi~l~v~~Ge---vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVF 83 (240)
T COG1126 7 NLSKSFGDKEVLKGISLSVEKGE---VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVF 83 (240)
T ss_pred eeeEEeCCeEEecCcceeEcCCC---EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeec
Confidence 44456688999999999999999 99999999999999999999999 89999999995332 25789999
Q ss_pred CCCCCCchhhHHHHHHHhh---cc--------------cccccc-ccccccccccCceeeeecCccEEEEeechhccccc
Q 006782 113 DDPRLTDYDTLLENIRGLK---EG--------------KAVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~---~g--------------~~I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl 174 (631)
|++++|++.|+.+|+.... .+ ..+... ..+....+.+||+.++++.++.+..++.++|.||+
T Consensus 84 Q~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEP 163 (240)
T COG1126 84 QQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEP 163 (240)
T ss_pred ccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCC
Confidence 9999999999999985311 01 011111 23444578899999999999999999999999999
Q ss_pred cCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeee
Q 006782 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYIL 254 (631)
Q Consensus 175 ~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iL 254 (631)
++.||+ +-+.-...+.+++++.|.|.--|+|.+. |- ++.||-|| .+
T Consensus 164 TSALDP-------Elv~EVL~vm~~LA~eGmTMivVTHEM~------FA------r~Vadrvi---------------Fm 209 (240)
T COG1126 164 TSALDP-------ELVGEVLDVMKDLAEEGMTMIIVTHEMG------FA------REVADRVI---------------FM 209 (240)
T ss_pred cccCCH-------HHHHHHHHHHHHHHHcCCeEEEEechhH------HH------HHhhheEE---------------Ee
Confidence 999997 3344455677888888998777777761 11 23455554 34
Q ss_pred ccCCcccHHHHHHHhccccccccccee
Q 006782 255 KSTRPVTVDEIKAVMSKEHTETTEETY 281 (631)
Q Consensus 255 Ks~~~v~~~~Ik~vL~~~~~~~~~~f~ 281 (631)
..+..+..+.=.++|.++..+.++.|.
T Consensus 210 d~G~iie~g~p~~~f~~p~~~R~~~FL 236 (240)
T COG1126 210 DQGKIIEEGPPEEFFDNPKSERTRQFL 236 (240)
T ss_pred eCCEEEEecCHHHHhcCCCCHHHHHHH
Confidence 445445445556777777666666655
No 22
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.84 E-value=5.6e-22 Score=212.10 Aligned_cols=265 Identities=17% Similarity=0.187 Sum_probs=184.1
Q ss_pred eeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------
Q 006782 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (631)
Q Consensus 34 ~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------- 104 (631)
+++..+...|....+...+|++|||.+++|+ ++||+|+||||||||+++|++++ |+.|.|.++|....
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Ge---i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQ---IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 4455555444211123579999999999999 99999999999999999999999 89999999997532
Q ss_pred --ccccccccCCCCCCchhhHHHHHHHhhc--cc---c-----------ccc-cccccccccccCceeeeecCccEEEEe
Q 006782 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (631)
Q Consensus 105 --~~~i~~vfq~p~l~d~~tl~e~L~~L~~--g~---~-----------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvE 165 (631)
.+.++++||++.+++..++.+|+..... +. . +.. ...+....+.++|+++++..+++++.+
T Consensus 79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~ 158 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASN 158 (343)
T ss_pred HHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhC
Confidence 2468999999999999999999975321 10 0 111 122344457788999999999999999
Q ss_pred echhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHh-CCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCC
Q 006782 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (631)
Q Consensus 166 Gi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~er-G~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (631)
+.+++.||+++.+|.. ....+..+.+++.+. |.++ ++|.++.+..
T Consensus 159 P~iLLlDEPts~LD~~-------t~~~i~~lL~~l~~~~g~ti---------------------------iliTH~~~~v 204 (343)
T TIGR02314 159 PKVLLCDEATSALDPA-------TTQSILELLKEINRRLGLTI---------------------------LLITHEMDVV 204 (343)
T ss_pred CCEEEEeCCcccCCHH-------HHHHHHHHHHHHHHhcCCEE---------------------------EEEeCCHHHH
Confidence 9999999999999983 333444444444332 4443 3444444444
Q ss_pred CCCCCceeeeccCCcccHHHHHHHhcccccccccceeeeecCCCCCCchhccceeeeee---cCCEEEEEEeeeecCCCe
Q 006782 245 TGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRMRN---RDGKYNLMFEEWVTDSPF 321 (631)
Q Consensus 245 ~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~~~f~DIYl~pP~~d~~~tde~LRvR~---~dg~~~LtykG~~~d~p~ 321 (631)
..+|+.+++|+.++.+..+...+++..+....++.|..-.+....+ ....+.++-.. .+..+.+.|.|.....|.
T Consensus 205 ~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 282 (343)
T TIGR02314 205 KRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTLHLSIP--EDYQERLQATPFADSVPMVRLEFTGQTVDAPL 282 (343)
T ss_pred HHhCCEEEEEECCEEEEEcCHHHHHcCCCcHHHHHHHhhcccccCC--hhHHhhcccccCCCcceEEEEEEcCCCCCchH
Confidence 5678888999999888888888888776655556655322211100 11111111111 123689999999999999
Q ss_pred eecceeEeeeehhhHH
Q 006782 322 IISPRITFEVSVRLLG 337 (631)
Q Consensus 322 isrp~~ef~V~v~il~ 337 (631)
++.....|+|++++++
T Consensus 283 ~~~~~~~~~~~~~il~ 298 (343)
T TIGR02314 283 LSQTARRFNVDNSILS 298 (343)
T ss_pred HHHHHHHhCCcEEEEE
Confidence 8888877888877753
No 23
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.83 E-value=2.4e-21 Score=206.37 Aligned_cols=137 Identities=25% Similarity=0.246 Sum_probs=116.6
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDP 115 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~p 115 (631)
+++..+|...++++|||.+++|+ +++|+|||||||||++|+|+|+. |+.|.|.++|.... .|.++++||+.
T Consensus 10 ~v~k~yg~~~av~~isl~i~~Ge---f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~Y 86 (352)
T COG3842 10 NVSKSFGDFTAVDDISLDIKKGE---FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSY 86 (352)
T ss_pred eeeeecCCeeEEecceeeecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCc
Confidence 34555678899999999999999 99999999999999999999999 99999999998543 37799999999
Q ss_pred CCCchhhHHHHHHHhhc-cc-----cc-----------cc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 116 RLTDYDTLLENIRGLKE-GK-----AV-----------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~-g~-----~I-----------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
.+|+++++.+|+++-.+ .+ .+ .. ..-+...++.++|+.++++.++.++.++.++|.||+.+.
T Consensus 87 ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSa 166 (352)
T COG3842 87 ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSA 166 (352)
T ss_pred ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccc
Confidence 99999999999987544 11 01 11 123444578899999999999999999999999999999
Q ss_pred CcEE
Q 006782 178 IDLR 181 (631)
Q Consensus 178 lDlk 181 (631)
+|.+
T Consensus 167 LD~k 170 (352)
T COG3842 167 LDAK 170 (352)
T ss_pred hhHH
Confidence 9975
No 24
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.82 E-value=7.1e-21 Score=191.29 Aligned_cols=196 Identities=15% Similarity=0.215 Sum_probs=159.4
Q ss_pred cceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc----------ccc
Q 006782 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS----------RII 108 (631)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~----------~~i 108 (631)
.+++++.+|.+.|+++|+|.+++|+ +.||+||||||||||+|.|.+++ |+.|.|.++|.+... +++
T Consensus 11 vr~v~~~fG~~~Ild~v~l~V~~Ge---i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~ 87 (263)
T COG1127 11 VRGVTKSFGDRVILDGVDLDVPRGE---ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM 87 (263)
T ss_pred EeeeeeecCCEEEecCceeeecCCc---EEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhe
Confidence 3566788899999999999999999 99999999999999999999999 999999999986432 468
Q ss_pred ccccCCCCCCchhhHHHHHHHhhcc-----------------cccccc-c-cccccccccCceeeeecCccEEEEeechh
Q 006782 109 DGNFDDPRLTDYDTLLENIRGLKEG-----------------KAVQVP-I-YDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~g-----------------~~I~~P-v-yd~~~~~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
|++||+-.+|+.+++.||++..... +.+-.+ . .+.-..+.+||...+++.++++.+++.++
T Consensus 88 GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell 167 (263)
T COG1127 88 GVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELL 167 (263)
T ss_pred eEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999863321 112222 2 55556788999999999999999999999
Q ss_pred ccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCC
Q 006782 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQN 249 (631)
Q Consensus 170 L~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n 249 (631)
|+|||+..+|+. .+..-..|++++++.+ |.| -++|.++.+-...+|+
T Consensus 168 ~~DEPtsGLDPI---~a~~~~~LI~~L~~~l---g~T---------------------------~i~VTHDl~s~~~i~D 214 (263)
T COG1127 168 FLDEPTSGLDPI---SAGVIDELIRELNDAL---GLT---------------------------VIMVTHDLDSLLTIAD 214 (263)
T ss_pred EecCCCCCCCcc---hHHHHHHHHHHHHHhh---CCE---------------------------EEEEECChHHHHhhhc
Confidence 999999999985 5555556666665543 444 5666667666678899
Q ss_pred ceeeeccCCcccHHHHHHHhcc
Q 006782 250 PTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 250 ~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
.+++|..++.+..+...+.+..
T Consensus 215 rv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 215 RVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred eEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999988887777777654
No 25
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.82 E-value=1e-19 Score=183.73 Aligned_cols=179 Identities=22% Similarity=0.303 Sum_probs=142.7
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHHhC-CCceE----EEECCcccccc---ccccc--cCCCCCCchhhHHHHHHHhhc
Q 006782 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAV----ITMDNYNDSSR---IIDGN--FDDPRLTDYDTLLENIRGLKE 132 (631)
Q Consensus 63 gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~----I~lDg~~~~~~---~i~~v--fq~p~l~d~~tl~e~L~~L~~ 132 (631)
..++.+|||+|+||||||||++.|++.+ +..|. |.+|+++.... ..++. +..|..++...+.+.+..++.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~l~~ 109 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRRLRA 109 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHHHHHHHc
Confidence 3567899999999999999999999999 55554 89999865431 22332 345667787788888888888
Q ss_pred cc-cccccccccccccccCceeeeecCccEEEEeechhccc-----cccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCC
Q 006782 133 GK-AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (631)
Q Consensus 133 g~-~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d-----El~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s 206 (631)
+. .+..|.||+..+..........+..+++|+||.+++.+ .+.+.+|.+|||+++.+.++.|.+.|+ .++|++
T Consensus 110 ~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~-~~~g~s 188 (229)
T PRK09270 110 GDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARK-LAGGLS 188 (229)
T ss_pred CCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHH-HhcCCC
Confidence 86 89999999988766553322223578999999999874 577899999999999998877667775 457999
Q ss_pred HHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 207 PEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 207 ~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
.+++.++|..++.|.+ .|++|.++.||+||.|+..-
T Consensus 189 ~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~~ 224 (229)
T PRK09270 189 PEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTATG 224 (229)
T ss_pred HHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCCc
Confidence 9999999988888887 69999999999999987644
No 26
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.3e-20 Score=189.91 Aligned_cols=212 Identities=16% Similarity=0.205 Sum_probs=160.0
Q ss_pred ceeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc------
Q 006782 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------ 105 (631)
Q Consensus 33 ~~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~------ 105 (631)
+.++.++...|......++++++|||.+.+|+ ++||+|+||||||||+++|+|+. |+.|.|.++|.....
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge---~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGE---TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCC---EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchh
Confidence 34555665555444445569999999999999 89999999999999999999999 999999999964332
Q ss_pred --cccccccCCCC--CCchhhHHHHHHHhhcc--------------cccccc--ccccccccccCceeeeecCccEEEEe
Q 006782 106 --RIIDGNFDDPR--LTDYDTLLENIRGLKEG--------------KAVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (631)
Q Consensus 106 --~~i~~vfq~p~--l~d~~tl~e~L~~L~~g--------------~~I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvE 165 (631)
+.+.++||||. +.+..++.+.|.+...- +.+..| .++...++.+||+.++++.+++++.|
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~ 159 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence 45788999995 57888888888654331 123333 46777789999999999999999999
Q ss_pred echhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCC
Q 006782 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (631)
Q Consensus 166 Gi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (631)
+.+++.||+++.+|.. -...+..+..++++ +|.+ =+.|.++....
T Consensus 160 PklLIlDEptSaLD~s-------iQa~IlnlL~~l~~~~~lt---------------------------~l~IsHdl~~v 205 (252)
T COG1124 160 PKLLILDEPTSALDVS-------VQAQILNLLLELKKERGLT---------------------------YLFISHDLALV 205 (252)
T ss_pred CCEEEecCchhhhcHH-------HHHHHHHHHHHHHHhcCce---------------------------EEEEeCcHHHH
Confidence 9999999999999983 23345555555532 2333 45566666666
Q ss_pred CCCCCceeeeccCCcccHHHHHHHhccccccccccee
Q 006782 245 TGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETY 281 (631)
Q Consensus 245 ~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~~~f~ 281 (631)
.-+|++++||+.+..++.....+++..+....++...
T Consensus 206 ~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr~Ll 242 (252)
T COG1124 206 EHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTRELL 242 (252)
T ss_pred HHHhhheeeeeCCeEEEeechhhhhcCCccHHHHHHH
Confidence 7789999999999888877777777665555554433
No 27
>PRK06696 uridine kinase; Validated
Probab=99.80 E-value=3.6e-19 Score=179.15 Aligned_cols=178 Identities=18% Similarity=0.262 Sum_probs=136.9
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHHhCC--C--ceEEEECCccccccc-cccccCCC-----CCCchhhHHHHHHHhh-
Q 006782 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP--S--IAVITMDNYNDSSRI-IDGNFDDP-----RLTDYDTLLENIRGLK- 131 (631)
Q Consensus 63 gekp~IIGI~GpsGSGKSTLlr~L~~llp--~--~G~I~lDg~~~~~~~-i~~vfq~p-----~l~d~~tl~e~L~~L~- 131 (631)
+.++++|||.|++|||||||++.|+..++ + .-.+++|+|+..... ....+.++ ..++...+.+.+..+.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 45688999999999999999999999983 2 234569999765421 11122232 4677888888877643
Q ss_pred cc--ccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHH
Q 006782 132 EG--KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (631)
Q Consensus 132 ~g--~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~ 209 (631)
.+ ..+..|.|++..+.........+.+..++|+||.+++.+++...+|.+|||+++.++++.|++.|+...+|. .++
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~-~~~ 177 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGS-YEE 177 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCC-chH
Confidence 32 246677888887765432344456778999999999988999999999999999999999999999888885 566
Q ss_pred HHHHHHhccccchhhcccCC--CCCCeEEEeCCC
Q 006782 210 IIHQISETVYPMYKAFIEPD--LQTAHIKIINKF 241 (631)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~--k~~ADiII~N~~ 241 (631)
+...|...+.|++..|+.+. +++||+||.|+.
T Consensus 178 ~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 178 AEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 78888888899988887554 899999997754
No 28
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.2e-20 Score=189.17 Aligned_cols=170 Identities=20% Similarity=0.216 Sum_probs=132.0
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccc--cccccccccCCCCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRIIDGNFDDPRL 117 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~--~~~~i~~vfq~p~l 117 (631)
+++++.++...||++|+|.+.+|+ +|+|+||||||||||+|+|+|+. |+.|.|.++|... ....++|+||++.+
T Consensus 7 ~~v~~~f~~~~vl~~i~L~v~~GE---fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~L 83 (248)
T COG1116 7 EGVSKSFGGVEVLEDINLSVEKGE---FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDAL 83 (248)
T ss_pred EeeEEEeCceEEeccceeEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcc
Confidence 344455666899999999999999 99999999999999999999999 9999999999864 33578999999999
Q ss_pred CchhhHHHHHHHhhcccc----------------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 TDYDTLLENIRGLKEGKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~g~~----------------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++|.|+.+|+........ +.. ..-+...++.+||++++++.++.++.++.++|.|||+..+|.
T Consensus 84 lPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDa 163 (248)
T COG1116 84 LPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDA 163 (248)
T ss_pred cchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhH
Confidence 999999999975433211 111 123444578999999999999999999999999999999996
Q ss_pred EEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccc
Q 006782 181 RVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVY 219 (631)
Q Consensus 181 kIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~ 219 (631)
. .-..+...+.+-+.+.+.|+--|+|.+.+.+.
T Consensus 164 l------TR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 164 L------TREELQDELLRLWEETRKTVLLVTHDVDEAVY 196 (248)
T ss_pred H------HHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh
Confidence 3 12223334444455566776666666655543
No 29
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.6e-20 Score=192.60 Aligned_cols=200 Identities=18% Similarity=0.186 Sum_probs=143.5
Q ss_pred eecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCc---cc-----cccccccccCCC
Q 006782 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY---ND-----SSRIIDGNFDDP 115 (631)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~---~~-----~~~~i~~vfq~p 115 (631)
+.++.+.++++|++.++.|+ ++|+.|||||||||++|+|+|++ |+.|.|.++|. +. ..+++|++|||+
T Consensus 10 ~~~~~~~a~~di~l~i~~Ge---~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~Y 86 (345)
T COG1118 10 KRFGAFGALDDISLDIKSGE---LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY 86 (345)
T ss_pred hhcccccccccceeeecCCc---EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEech
Confidence 44577888999999999999 99999999999999999999999 99999999997 32 237899999999
Q ss_pred CCCchhhHHHHHHHhhccc-------ccc-----------c-cccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 116 RLTDYDTLLENIRGLKEGK-------AVQ-----------V-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~g~-------~I~-----------~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
.+|+++|+.+|+++-..-. .+. . ..-+....+.++++.++++.++++.+|+.++|+|||..
T Consensus 87 ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ 166 (345)
T COG1118 87 ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFG 166 (345)
T ss_pred hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCch
Confidence 9999999999998754211 010 0 11233456789999999999999999999999999999
Q ss_pred CCcEEEEEEcChhhHHHHHHHHHHHHh-CCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeec
Q 006782 177 LIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILK 255 (631)
Q Consensus 177 ~lDlkIfVdad~d~rLiRRI~RDv~er-G~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLK 255 (631)
.||.++ ..-+|+..|++.++ |.+ -+-|.+|.+-....+++|.+|.
T Consensus 167 ALDa~v-------r~~lr~wLr~~~~~~~~t---------------------------tvfVTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 167 ALDAKV-------RKELRRWLRKLHDRLGVT---------------------------TVFVTHDQEEALELADRVVVLN 212 (345)
T ss_pred hhhHHH-------HHHHHHHHHHHHHhhCce---------------------------EEEEeCCHHHHHhhcceEEEec
Confidence 999751 11234444444433 433 2333333333334455566666
Q ss_pred cCCcccHHHHHHHhccccccccccee
Q 006782 256 STRPVTVDEIKAVMSKEHTETTEETY 281 (631)
Q Consensus 256 s~~~v~~~~Ik~vL~~~~~~~~~~f~ 281 (631)
.|+..-++.-.+++.++.+...-.|.
T Consensus 213 ~G~Ieqvg~p~ev~~~P~s~fV~~f~ 238 (345)
T COG1118 213 QGRIEQVGPPDEVYDHPASRFVARFL 238 (345)
T ss_pred CCeeeeeCCHHHHhcCCCccceeccc
Confidence 66655445555666665555444444
No 30
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.79 E-value=3.1e-20 Score=197.06 Aligned_cols=137 Identities=20% Similarity=0.217 Sum_probs=116.3
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-----cccccccCCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-----RIIDGNFDDP 115 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-----~~i~~vfq~p 115 (631)
++.+.+|...++++++|.++.|+ ++.|+||||||||||+|+|+|+. |+.|.|.+||...+. |.++++||++
T Consensus 8 ~v~K~yg~~~~l~~i~l~i~~Ge---f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~y 84 (338)
T COG3839 8 NVRKSFGSFEVLKDVNLDIEDGE---FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNY 84 (338)
T ss_pred eeEEEcCCceeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCc
Confidence 44455565448999999999999 99999999999999999999999 899999999986543 7899999999
Q ss_pred CCCchhhHHHHHHHhhccc-----ccc------------ccccccccccccCceeeeecCccEEEEeechhccccccCCC
Q 006782 116 RLTDYDTLLENIRGLKEGK-----AVQ------------VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~g~-----~I~------------~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
.+|+++|+++|+++..+.. .+. -...++...+.+||+.++++.++.++-++.+.|.|||.+.+
T Consensus 85 ALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnL 164 (338)
T COG3839 85 ALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNL 164 (338)
T ss_pred cccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHh
Confidence 9999999999998754422 111 12355666788999999999999999999999999999999
Q ss_pred cEE
Q 006782 179 DLR 181 (631)
Q Consensus 179 Dlk 181 (631)
|.+
T Consensus 165 Da~ 167 (338)
T COG3839 165 DAK 167 (338)
T ss_pred hHH
Confidence 975
No 31
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.79 E-value=3.6e-20 Score=186.69 Aligned_cols=145 Identities=19% Similarity=0.232 Sum_probs=117.1
Q ss_pred eeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------
Q 006782 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (631)
Q Consensus 34 ~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------- 104 (631)
+++..+.+.|........+|++++|.+++|+ +|+|+||||||||||+++|.++. |+.|.|.++|.+..
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge---~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGE---FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHH
Confidence 3455666666544445789999999999999 99999999999999999999999 99999999996432
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHHhh--cccc----------------ccccccccccccccCceeeeecCccEEE
Q 006782 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLK--EGKA----------------VQVPIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 105 ---~~~i~~vfq~p~l~d~~tl~e~L~~L~--~g~~----------------I~~Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
.+.+||+||++++++..|+.||+.... .+.. +.....++..++.+||+.++++.+++++
T Consensus 79 ~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 146899999999999999999997421 1111 1111222445688999999999999999
Q ss_pred EeechhccccccCCCcEE
Q 006782 164 IEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDlk 181 (631)
.++.+++.|||+..+|.+
T Consensus 159 ~~P~iilADEPTgnLD~~ 176 (226)
T COG1136 159 NNPKIILADEPTGNLDSK 176 (226)
T ss_pred cCCCeEEeeCccccCChH
Confidence 999999999999999985
No 32
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.78 E-value=6.1e-20 Score=185.76 Aligned_cols=203 Identities=19% Similarity=0.198 Sum_probs=149.9
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCC
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDD 114 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~ 114 (631)
+++.++.+.+++++||.++.|+ ++.++|||||||||++++|.+++ |+.|.|.++|..... +.+||+-|.
T Consensus 7 vsk~y~~~~av~~v~l~I~~ge---f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQq 83 (309)
T COG1125 7 VSKRYGNKKAVDDVNLTIEEGE---FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQ 83 (309)
T ss_pred eehhcCCceeeeeeeEEecCCe---EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhh
Confidence 3445568889999999999999 99999999999999999999999 999999999985432 679999999
Q ss_pred CCCCchhhHHHHHHHhhccc----------------cccc-c--ccccccccccCceeeeecCccEEEEeechhcccccc
Q 006782 115 PRLTDYDTLLENIRGLKEGK----------------AVQV-P--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~g~----------------~I~~-P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~ 175 (631)
..+|+++|+.+|++..-.-. -+.. | ..++..++.+||+.++++.+++++.++.++|.|||+
T Consensus 84 igLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPF 163 (309)
T COG1125 84 IGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPF 163 (309)
T ss_pred cccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCc
Confidence 99999999999997533211 1112 2 235556889999999999999999999999999999
Q ss_pred CCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeec
Q 006782 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILK 255 (631)
Q Consensus 176 ~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLK 255 (631)
..+|.. .-..-...+.++++ +-|+|+.-|+|.+.+. -..-+++++|+
T Consensus 164 gALDpI---~R~~lQ~e~~~lq~---~l~kTivfVTHDidEA---------------------------~kLadri~vm~ 210 (309)
T COG1125 164 GALDPI---TRKQLQEEIKELQK---ELGKTIVFVTHDIDEA---------------------------LKLADRIAVMD 210 (309)
T ss_pred cccChh---hHHHHHHHHHHHHH---HhCCEEEEEecCHHHH---------------------------HhhhceEEEec
Confidence 999984 11111111122222 2355555555544332 23345567777
Q ss_pred cCCcccHHHHHHHhccccccccccee
Q 006782 256 STRPVTVDEIKAVMSKEHTETTEETY 281 (631)
Q Consensus 256 s~~~v~~~~Ik~vL~~~~~~~~~~f~ 281 (631)
.+..+-++.=.+++.++..+..+.|.
T Consensus 211 ~G~i~Q~~~P~~il~~Pan~FV~~f~ 236 (309)
T COG1125 211 AGEIVQYDTPDEILANPANDFVEDFF 236 (309)
T ss_pred CCeEEEeCCHHHHHhCccHHHHHHHh
Confidence 77777667777777777766666665
No 33
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.77 E-value=1.6e-19 Score=185.26 Aligned_cols=163 Identities=19% Similarity=0.210 Sum_probs=124.3
Q ss_pred cceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccc
Q 006782 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (631)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~v 111 (631)
.+++++.|+.+.+++++||.+++|+ +++|+||||||||||+|+|++++ |..|.|.+||..... +.++|+
T Consensus 5 ~~~ls~~y~~~~il~~ls~~i~~G~---i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 5 VENLSFGYGGKPILDDLSFSIPKGE---ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred EEEEEEEECCeeEEecceEEecCCc---EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 4667788899999999999999999 99999999999999999999999 899999999975432 578999
Q ss_pred cCCCCCCchhhHHHHHHHhhccc----------c---c-------cc-cccccccccccCceeeeecCccEEEEeechhc
Q 006782 112 FDDPRLTDYDTLLENIRGLKEGK----------A---V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g~----------~---I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL 170 (631)
+|.+......++.|.+..-+... + + .. ..-+....+.+||+++++-.+++++-++.+++
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLL 161 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILL 161 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEE
Confidence 99987777778888776432210 0 0 00 11223345778999999999999999999999
Q ss_pred cccccCCCcEEEEEEcChhhHHHHHHHHHHH-HhCCCHHHHHH
Q 006782 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIH 212 (631)
Q Consensus 171 ~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~-erG~s~e~Vi~ 212 (631)
.|||+..+|++ +.-.+..+.+++. ++|.+.-.++|
T Consensus 162 LDEPTs~LDi~-------~Q~evl~ll~~l~~~~~~tvv~vlH 197 (258)
T COG1120 162 LDEPTSHLDIA-------HQIEVLELLRDLNREKGLTVVMVLH 197 (258)
T ss_pred eCCCccccCHH-------HHHHHHHHHHHHHHhcCCEEEEEec
Confidence 99999999995 3333444445444 44666444433
No 34
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.4e-19 Score=193.74 Aligned_cols=249 Identities=18% Similarity=0.219 Sum_probs=161.3
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------ccccccccCCCCC
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPRL 117 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~vfq~p~l 117 (631)
...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.++++||++.+
T Consensus 17 ~~~il~~vsl~i~~Ge---i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l 93 (343)
T PRK11153 17 TIHALNNVSLHIPAGE---IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNL 93 (343)
T ss_pred ceEEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCcc
Confidence 4679999999999999 99999999999999999999999 89999999997532 2458999999999
Q ss_pred CchhhHHHHHHHhhc--cc-------c-------cccc-ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 TDYDTLLENIRGLKE--GK-------A-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~--g~-------~-------I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++..++.+++..... +. . +..+ ..+....+.++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 94 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~ 173 (343)
T PRK11153 94 LSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173 (343)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 988899999875321 10 0 0111 12333456788999999999999999999999999999997
Q ss_pred EEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCc
Q 006782 181 RVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRP 259 (631)
Q Consensus 181 kIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~ 259 (631)
. ....+..+.+++.. .|.+ =+++.++.+.....|+.+++|+.+..
T Consensus 174 ~-------~~~~l~~~L~~l~~~~g~t---------------------------iilvtH~~~~i~~~~d~v~~l~~G~i 219 (343)
T PRK11153 174 A-------TTRSILELLKDINRELGLT---------------------------IVLITHEMDVVKRICDRVAVIDAGRL 219 (343)
T ss_pred H-------HHHHHHHHHHHHHHhcCCE---------------------------EEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 3 23334444444322 2433 23333343333455777777877776
Q ss_pred ccHHHHHHHhcccccccccceeeeecCCCCCCchhccceeee---eecCCEEEEEEeeeecCCCeeecceeEeeeehhhH
Q 006782 260 VTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRM---RNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLL 336 (631)
Q Consensus 260 v~~~~Ik~vL~~~~~~~~~~f~DIYl~pP~~d~~~tde~LRv---R~~dg~~~LtykG~~~d~p~isrp~~ef~V~v~il 336 (631)
+..+...+++..+.......+..-.+..+.. ...-..++. ...+..+.+.|.+.....+.+......++|+++++
T Consensus 220 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 297 (343)
T PRK11153 220 VEQGTVSEVFSHPKHPLTREFIQSTLHLDLP--EDYLARLQAEPTTGSGPLLRLEFTGESVDAPLLSETARRFGVDFNIL 297 (343)
T ss_pred EEEcCHHHHHhCCCcHHHHHHHhccccccCc--hhHhhhcccccccCCCcEEEEEEeCCccccHHHHHHHHHhCCcEEEE
Confidence 6656666666544322222222111111111 000111111 11234688999887766666655555555555553
No 35
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.76 E-value=1e-18 Score=172.23 Aligned_cols=159 Identities=17% Similarity=0.198 Sum_probs=122.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccc------cccccCCCCCCchhhHHHHHHHhhcccccccccc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI------IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~------i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvy 141 (631)
+|||.|++||||||+++.|+..++....|++|+|+..... -.++|++|..+|...+.+.|..++.+..+..+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 5899999999999999999999877889999999765421 1257999999999999999999999886655555
Q ss_pred cccccccc-------------CceeeeecCccEEEEeechhcc-ccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCC
Q 006782 142 DFKSSSRI-------------GYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (631)
Q Consensus 142 d~~~~~rs-------------~~~~~~v~~a~VLIvEGi~lL~-dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s 206 (631)
+....... ........+.++||+||.+++. +++++++|++|||++|.++++.||+.|+... .|--
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 44432211 0123346778899999999988 5899999999999999999999999887321 1111
Q ss_pred HHHHHHHHHhccccchhhcc
Q 006782 207 PEEIIHQISETVYPMYKAFI 226 (631)
Q Consensus 207 ~e~Vi~q~~~~v~P~~~~fI 226 (631)
..+...++.+.|||+|.+..
T Consensus 161 w~Dp~~yf~~~v~p~y~~~~ 180 (187)
T cd02024 161 WPDPPGYFDGHVWPMYLKHH 180 (187)
T ss_pred cCCCCcccccccchhHHHHH
Confidence 23456788889999998653
No 36
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=99.74 E-value=2.4e-17 Score=159.42 Aligned_cols=146 Identities=23% Similarity=0.253 Sum_probs=127.1
Q ss_pred HHHHHHHhcccc-c-ccccceeeeecCCCCCCchhccceeeeeecC--CEEEEEEeeeecCCCeeecceeEeeee--hhh
Q 006782 262 VDEIKAVMSKEH-T-ETTEETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVS--VRL 335 (631)
Q Consensus 262 ~~~Ik~vL~~~~-~-~~~~~f~DIYl~pP~~d~~~tde~LRvR~~d--g~~~LtykG~~~d~p~isrp~~ef~V~--v~i 335 (631)
.+.+++.+.... . .....+.|+||..|+.++...+.|||+|..+ +.+.+|||++..++.+..+++.++.|. ..+
T Consensus 11 ~~~~~~~l~~l~~~~~~~~~q~d~Yfd~p~~~l~~~~~~LRiR~~~~~~~~~lT~K~~~~~~~~~~~~E~e~~v~~~~~~ 90 (169)
T cd07890 11 LEALRERLAALGGAEGGREFQEDIYFDHPDRDLAATDEALRLRRMGDSGKTLLTYKGPKLDGGPKVREEIETEVADPEAM 90 (169)
T ss_pred HHHHHHHHHhcccccccceeEeEEEEcCCchhHHhCCCcEEEEEeCCCCcEEEEEECCCCCCCccceEEEEEecCCHHHH
Confidence 356667776532 2 2344566999999999999999999999987 899999999998876667888888884 667
Q ss_pred HHHHhhcCCeEEEEEEeeeeEeecCcEEEEeecccccCcceEEEEec------cHHHHHHHHHHcCCCC-CccchhhHHH
Q 006782 336 LGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR------DRLYVKYVGEQLGLDG-SYVPRTYIEQ 408 (631)
Q Consensus 336 l~GL~~LGy~~~a~v~k~re~y~~~~~~i~lD~ve~Lg~~FveI~g~------~~~~v~~~~~~Lgl~g-~~i~kSYLEl 408 (631)
...|.+|||.+.+.+.|.|..|..+++.|++|+++||| .|+||++. +.+.+..++..||+.+ +.+++||+|+
T Consensus 91 ~~iL~~lg~~~~~~~~K~R~~~~~~~~~v~lD~~~~lG-~f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~~ 169 (169)
T cd07890 91 KEILERLGFGPVGRVKKEREIYLLGQTRVHLDRVEGLG-DFVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLEL 169 (169)
T ss_pred HHHHHHcCCceeEEEEEEEEEEEECCEEEEEEccCCCC-ceEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhcC
Confidence 77889999999999999999999999999999999999 89999998 8999999999999987 7899999985
No 37
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.74 E-value=2.7e-18 Score=180.99 Aligned_cols=193 Identities=15% Similarity=0.138 Sum_probs=140.3
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFD 113 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq 113 (631)
+++++.++...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.+.. .+.++|++|
T Consensus 11 ~~l~k~~~~~~~l~~vsl~i~~Ge---i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q 87 (306)
T PRK13537 11 RNVEKRYGDKLVVDGLSFHVQRGE---CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQ 87 (306)
T ss_pred EeEEEEECCeEEEecceEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEec
Confidence 445555666789999999999999 99999999999999999999999 89999999998543 246899999
Q ss_pred CCCCCchhhHHHHHHHhhc--ccc--------------ccc-cccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 114 DPRLTDYDTLLENIRGLKE--GKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--g~~--------------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
++.+++..++.+++..... +.. +.. ...+...+..++|+.+++..+++++.++.+++.|||+.
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred cCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 9999998999999975322 100 011 12233345678889999999999999999999999999
Q ss_pred CCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 177 ~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
.+|+. ..+.++.+.+++++.|.++--+. +..+.....|+.+++|+.
T Consensus 168 gLD~~-------~~~~l~~~l~~l~~~g~till~s---------------------------H~l~e~~~~~d~i~il~~ 213 (306)
T PRK13537 168 GLDPQ-------ARHLMWERLRSLLARGKTILLTT---------------------------HFMEEAERLCDRLCVIEE 213 (306)
T ss_pred CCCHH-------HHHHHHHHHHHHHhCCCEEEEEC---------------------------CCHHHHHHhCCEEEEEEC
Confidence 99983 33445555555544454432222 222222345777788887
Q ss_pred CCcccHHHHHHHhc
Q 006782 257 TRPVTVDEIKAVMS 270 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~ 270 (631)
++.+..+...++..
T Consensus 214 G~i~~~g~~~~l~~ 227 (306)
T PRK13537 214 GRKIAEGAPHALIE 227 (306)
T ss_pred CEEEEECCHHHHHh
Confidence 77665555555443
No 38
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.74 E-value=1.9e-18 Score=185.71 Aligned_cols=203 Identities=17% Similarity=0.163 Sum_probs=145.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~ 114 (631)
+++++.++.+.+|++++|.+++|+ +++|+||||||||||+++|+|++ |+.|.|.+||.... .+.++|+||+
T Consensus 8 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~ 84 (353)
T TIGR03265 8 DNIRKRFGAFTALKDISLSVKKGE---FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQS 84 (353)
T ss_pred EEEEEEeCCeEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 344455566779999999999999 99999999999999999999999 89999999997543 2568999999
Q ss_pred CCCCchhhHHHHHHHhhcccc---------c-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 115 PRLTDYDTLLENIRGLKEGKA---------V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~g~~---------I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+.+|++.++.+|+........ + .+ +..+...++.++|+.+++..++.++.++.+++.|||+..
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~ 164 (353)
T TIGR03265 85 YALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSA 164 (353)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999999999999985432110 0 01 223445567888999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
+|.. ..+.++...+++.+ .|.+ =+++.++.+-....++.+++|+.
T Consensus 165 LD~~-------~r~~l~~~L~~l~~~~~~t---------------------------vi~vTHd~~ea~~l~d~i~vl~~ 210 (353)
T TIGR03265 165 LDAR-------VREHLRTEIRQLQRRLGVT---------------------------TIMVTHDQEEALSMADRIVVMNH 210 (353)
T ss_pred CCHH-------HHHHHHHHHHHHHHhcCCE---------------------------EEEEcCCHHHHHHhCCEEEEEEC
Confidence 9973 11222222222221 1333 23333333333456777888888
Q ss_pred CCcccHHHHHHHhcccccccccce
Q 006782 257 TRPVTVDEIKAVMSKEHTETTEET 280 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~~~~~~~~~~f 280 (631)
++.+..+...+++.++.......|
T Consensus 211 G~i~~~g~~~~~~~~p~~~~~a~~ 234 (353)
T TIGR03265 211 GVIEQVGTPQEIYRHPATPFVADF 234 (353)
T ss_pred CEEEEEcCHHHHHhCCCCHHHHHh
Confidence 877766666777766544333333
No 39
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=2.3e-18 Score=185.29 Aligned_cols=196 Identities=16% Similarity=0.150 Sum_probs=141.6
Q ss_pred eeEeec-CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCC
Q 006782 42 TLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (631)
Q Consensus 42 ~ls~~~-g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~ 114 (631)
++++.+ +...+|++++|.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... .+.++|+||+
T Consensus 8 ~l~~~~~~~~~~l~~vsl~i~~Ge---~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 84 (356)
T PRK11650 8 AVRKSYDGKTQVIKGIDLDVADGE---FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQN 84 (356)
T ss_pred eEEEEeCCCCEEEeeeeEEEcCCC---EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 344444 55679999999999999 99999999999999999999999 89999999997542 2578999999
Q ss_pred CCCCchhhHHHHHHHhhccc-----c----c-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 115 PRLTDYDTLLENIRGLKEGK-----A----V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~g~-----~----I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+.+|+..++.+|+....... . + .+ ...+...++.++|+.+++..++.++.++.+++.|||+..
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~ 164 (356)
T PRK11650 85 YALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164 (356)
T ss_pred ccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99999999999997543210 0 0 11 123444467888999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
+|.. ....++...+++.+ .|.+ =+++.++.+.....++.+++|+.
T Consensus 165 LD~~-------~r~~l~~~l~~l~~~~g~t---------------------------ii~vTHd~~ea~~l~D~i~vl~~ 210 (356)
T PRK11650 165 LDAK-------LRVQMRLEIQRLHRRLKTT---------------------------SLYVTHDQVEAMTLADRVVVMNG 210 (356)
T ss_pred CCHH-------HHHHHHHHHHHHHHhcCCE---------------------------EEEEeCCHHHHHHhCCEEEEEeC
Confidence 9973 11222333333322 1333 33444444433456777788888
Q ss_pred CCcccHHHHHHHhccccc
Q 006782 257 TRPVTVDEIKAVMSKEHT 274 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~~~~~ 274 (631)
++.+..+...+++.++..
T Consensus 211 G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 211 GVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred CEEEEECCHHHHHhCCcc
Confidence 777666666666665543
No 40
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.8e-18 Score=184.27 Aligned_cols=204 Identities=17% Similarity=0.171 Sum_probs=145.6
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~ 114 (631)
+++++.++.+.+|++++|.+++|+ +++|+||||||||||+++|+|++ |+.|.|.+||.... .+.++++||+
T Consensus 10 ~~l~~~~~~~~~l~~isl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 86 (351)
T PRK11432 10 KNITKRFGSNTVIDNLNLTIKQGT---MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQS 86 (351)
T ss_pred EeEEEEECCeEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 344455566789999999999999 99999999999999999999999 89999999997542 2578999999
Q ss_pred CCCCchhhHHHHHHHhhc--c---c----c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 115 PRLTDYDTLLENIRGLKE--G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--g---~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+.+|+..++.+|+..... + . . +.. ...+...+..++|+.+++..++.++.++.+++.|||+..
T Consensus 87 ~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 87 YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred cccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 999999999999985322 1 0 0 011 122444567888999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
+|.. ....++...+++.+ .|.+ =+++.++.+.....++.+++|+.
T Consensus 167 LD~~-------~r~~l~~~l~~l~~~~g~t---------------------------ii~vTHd~~e~~~laD~i~vm~~ 212 (351)
T PRK11432 167 LDAN-------LRRSMREKIRELQQQFNIT---------------------------SLYVTHDQSEAFAVSDTVIVMNK 212 (351)
T ss_pred CCHH-------HHHHHHHHHHHHHHhcCCE---------------------------EEEEcCCHHHHHHhCCEEEEEEC
Confidence 9974 11222333333322 1333 23333343333456778888888
Q ss_pred CCcccHHHHHHHhccccccccccee
Q 006782 257 TRPVTVDEIKAVMSKEHTETTEETY 281 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~~~~~~~~~~f~ 281 (631)
++.+..+...+++.++.......|.
T Consensus 213 G~i~~~g~~~~~~~~p~~~~~a~~~ 237 (351)
T PRK11432 213 GKIMQIGSPQELYRQPASRFMASFM 237 (351)
T ss_pred CEEEEEcCHHHHHhCCCchHHHHhc
Confidence 8776666666666655444444433
No 41
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.73 E-value=3.1e-18 Score=185.37 Aligned_cols=204 Identities=17% Similarity=0.172 Sum_probs=146.6
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~ 114 (631)
+++++.++.+.++++++|.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... .+.++++||+
T Consensus 18 ~~l~~~~~~~~~l~~vsl~i~~Ge---~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 94 (375)
T PRK09452 18 RGISKSFDGKEVISNLDLTINNGE---FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQS 94 (375)
T ss_pred EEEEEEECCeEEEeeeEEEEeCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecC
Confidence 344555566789999999999999 99999999999999999999999 89999999997542 2568999999
Q ss_pred CCCCchhhHHHHHHHhhc--cc-------cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 115 PRLTDYDTLLENIRGLKE--GK-------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--g~-------~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+.+|+..++.+|+..... +. .+ .+ ...+...++.++|+.+++..+++++.++.+++.|||+..
T Consensus 95 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~ 174 (375)
T PRK09452 95 YALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174 (375)
T ss_pred cccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 999999999999975321 10 00 11 123444567888999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
+|.. ....++...+++.+ .|.+ =+++.++.+-....++.+++|+.
T Consensus 175 LD~~-------~r~~l~~~L~~l~~~~g~t---------------------------iI~vTHd~~ea~~laDri~vl~~ 220 (375)
T PRK09452 175 LDYK-------LRKQMQNELKALQRKLGIT---------------------------FVFVTHDQEEALTMSDRIVVMRD 220 (375)
T ss_pred CCHH-------HHHHHHHHHHHHHHhcCCE---------------------------EEEEeCCHHHHHHhCCEEEEEEC
Confidence 9973 11222333333322 2333 23333443333456777888888
Q ss_pred CCcccHHHHHHHhccccccccccee
Q 006782 257 TRPVTVDEIKAVMSKEHTETTEETY 281 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~~~~~~~~~~f~ 281 (631)
++.+..+...+++.++.......|.
T Consensus 221 G~i~~~g~~~~i~~~p~~~~~a~~~ 245 (375)
T PRK09452 221 GRIEQDGTPREIYEEPKNLFVARFI 245 (375)
T ss_pred CEEEEEcCHHHHHhCcccHHHHHhc
Confidence 8777666667777666544444444
No 42
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=5.4e-19 Score=173.53 Aligned_cols=197 Identities=17% Similarity=0.203 Sum_probs=151.0
Q ss_pred eccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc--------ccc
Q 006782 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RII 108 (631)
Q Consensus 38 ~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~--------~~i 108 (631)
....++.+.++.+.|++++||.+.+|+ +||+.|||||||||.+.++.|+. |+.|.|.+|+.+.+. ..+
T Consensus 5 L~a~~l~K~y~kr~Vv~~Vsl~v~~GE---iVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 5 LVAENLAKSYKKRKVVNDVSLEVNSGE---IVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEehhhhHhhCCeeeeeeeeEEEcCCc---EEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 344566677788999999999999999 99999999999999999999999 999999999986543 458
Q ss_pred ccccCCCCCCchhhHHHHHHHhhccccccc-------------------cccccccccccCceeeeecCccEEEEeechh
Q 006782 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQV-------------------PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~-------------------Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
+|.+|++..|..+++.+|+....+-..... ...+......+||++.++..++++..++.++
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi 161 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFI 161 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence 999999999999999999976443211000 0112222457889999999999999999999
Q ss_pred ccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEe-CCCCCCCCCC
Q 006782 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII-NKFNPFTGFQ 248 (631)
Q Consensus 170 L~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~-N~~~p~~~~~ 248 (631)
|+|||+...|+. .+.-++++.+.++.+|.- +.|. ++-.--.++|
T Consensus 162 LLDEPFAGVDPi-------aV~dIq~iI~~L~~rgiG----------------------------vLITDHNVREtL~i~ 206 (243)
T COG1137 162 LLDEPFAGVDPI-------AVIDIQRIIKHLKDRGIG----------------------------VLITDHNVRETLDIC 206 (243)
T ss_pred EecCCccCCCch-------hHHHHHHHHHHHHhCCce----------------------------EEEccccHHHHHhhh
Confidence 999999999985 334477788888777742 2221 1111114678
Q ss_pred CceeeeccCCcccHHHHHHHhccc
Q 006782 249 NPTYILKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 249 n~v~iLKs~~~v~~~~Ik~vL~~~ 272 (631)
++.||+..+..+..+.-.+++.++
T Consensus 207 dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 207 DRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred heEEEEecCeEEecCCHHHHhcCh
Confidence 899999999887777777776653
No 43
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.7e-17 Score=168.99 Aligned_cols=193 Identities=13% Similarity=0.181 Sum_probs=142.5
Q ss_pred eeEeecCc-eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccc
Q 006782 42 TLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (631)
Q Consensus 42 ~ls~~~g~-~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~v 111 (631)
.++|.++. ..++++++|.+++|+ .++|+|+||||||||++.|+|++ |..|.|.++|.... .+.++++
T Consensus 8 ~l~~~y~~~~~~l~~v~~~i~~Ge---~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~V 84 (235)
T COG1122 8 NLSFRYPGRKAALKDVSLEIEKGE---RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLV 84 (235)
T ss_pred EEEEEcCCCceeeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEE
Confidence 33444443 589999999999999 89999999999999999999999 89999999997533 2578999
Q ss_pred cCCCCC-CchhhHHHHHHHhhcccccc-----------------ccccccccccccCceeeeecCccEEEEeechhcccc
Q 006782 112 FDDPRL-TDYDTLLENIRGLKEGKAVQ-----------------VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (631)
Q Consensus 112 fq~p~l-~d~~tl~e~L~~L~~g~~I~-----------------~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dE 173 (631)
||+|+. +-..++.+.+++......+. ....++..+..|+|++++++.+.+++.++.++++||
T Consensus 85 fQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDE 164 (235)
T COG1122 85 FQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDE 164 (235)
T ss_pred EECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcC
Confidence 999964 44568888887654321111 012466678899999999999999999999999999
Q ss_pred ccCCCcEEEEEEcChhhHHHHHHHHHHHHh-CCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCcee
Q 006782 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTY 252 (631)
Q Consensus 174 l~~~lDlkIfVdad~d~rLiRRI~RDv~er-G~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~ 252 (631)
++.++|.+ ..+.+.++.+++... |.| =+++.++.+....+++.++
T Consensus 165 Pta~LD~~-------~~~~l~~~l~~L~~~~~~t---------------------------ii~~tHd~~~~~~~ad~v~ 210 (235)
T COG1122 165 PTAGLDPK-------GRRELLELLKKLKEEGGKT---------------------------IIIVTHDLELVLEYADRVV 210 (235)
T ss_pred CCCCCCHH-------HHHHHHHHHHHHHhcCCCe---------------------------EEEEeCcHHHHHhhCCEEE
Confidence 99999984 333344444444332 223 4555666666667778888
Q ss_pred eeccCCcccHHHHHHHhcc
Q 006782 253 ILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 253 iLKs~~~v~~~~Ik~vL~~ 271 (631)
+|+.+..+..+.-.+++..
T Consensus 211 vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 211 VLDDGKILADGDPAEIFND 229 (235)
T ss_pred EEECCEEeecCCHHHHhhh
Confidence 8888776555555555543
No 44
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.72 E-value=6e-18 Score=182.42 Aligned_cols=202 Identities=15% Similarity=0.116 Sum_probs=144.9
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCc--eEEEECCcccc-----ccccccccC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI--AVITMDNYNDS-----SRIIDGNFD 113 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~--G~I~lDg~~~~-----~~~i~~vfq 113 (631)
++++.++...+|++++|.+.+|+ +++|+||||||||||+++|+|++ |+. |.|.++|.... .+.++++||
T Consensus 10 ~l~~~~~~~~~l~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ 86 (362)
T TIGR03258 10 HLRVAYGANTVLDDLSLEIEAGE---LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQ 86 (362)
T ss_pred EEEEEECCeEEEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEEC
Confidence 33444455679999999999999 99999999999999999999999 889 99999997542 256899999
Q ss_pred CCCCCchhhHHHHHHHhhccc---------cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 114 DPRLTDYDTLLENIRGLKEGK---------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~g~---------~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
++.+|+..++.+|+....... .+ .+ ...+...++.++|+.+++..+++++.++.+++.|||+.
T Consensus 87 ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s 166 (362)
T TIGR03258 87 NYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLS 166 (362)
T ss_pred CcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 999999999999997532210 00 01 12344456788899999999999999999999999999
Q ss_pred CCcEEEEEEcChhhHHHHHHHHHHHHh--CCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeee
Q 006782 177 LIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYIL 254 (631)
Q Consensus 177 ~lDlkIfVdad~d~rLiRRI~RDv~er--G~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iL 254 (631)
.+|.. ....++...+++.+. |.+ =+++.++.+.....++.+++|
T Consensus 167 ~LD~~-------~r~~l~~~l~~l~~~~~g~t---------------------------il~vTHd~~ea~~l~dri~vl 212 (362)
T TIGR03258 167 ALDAN-------IRANMREEIAALHEELPELT---------------------------ILCVTHDQDDALTLADKAGIM 212 (362)
T ss_pred cCCHH-------HHHHHHHHHHHHHHhCCCCE---------------------------EEEEeCCHHHHHHhCCEEEEE
Confidence 99973 122233333333322 333 233334433334567778888
Q ss_pred ccCCcccHHHHHHHhcccccccccce
Q 006782 255 KSTRPVTVDEIKAVMSKEHTETTEET 280 (631)
Q Consensus 255 Ks~~~v~~~~Ik~vL~~~~~~~~~~f 280 (631)
+.++.+..+...+++.++.......|
T Consensus 213 ~~G~i~~~g~~~~~~~~p~~~~~a~~ 238 (362)
T TIGR03258 213 KDGRLAAHGEPQALYDAPADGFAAEF 238 (362)
T ss_pred ECCEEEEEcCHHHHHhCcCcHHHHHh
Confidence 88877766777777766543333333
No 45
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.71 E-value=8.3e-18 Score=180.79 Aligned_cols=198 Identities=16% Similarity=0.142 Sum_probs=143.6
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~ 114 (631)
+++++.++...++++++|.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+||.... .+.++|+||+
T Consensus 6 ~~l~~~~~~~~~l~~isl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~ 82 (353)
T PRK10851 6 ANIKKSFGRTQVLNDISLDIPSGQ---MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQH 82 (353)
T ss_pred EEEEEEeCCeEEEEEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecC
Confidence 344455566779999999999999 99999999999999999999999 89999999997542 2568999999
Q ss_pred CCCCchhhHHHHHHHhhc------ccc--------------cccc-ccccccccccCceeeeecCccEEEEeechhcccc
Q 006782 115 PRLTDYDTLLENIRGLKE------GKA--------------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~------g~~--------------I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dE 173 (631)
+.+|+..++.+|+..... +.. +.++ ..+...++.++|+.+++..+++++.++.+++.||
T Consensus 83 ~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDE 162 (353)
T PRK10851 83 YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE 162 (353)
T ss_pred cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999999975321 100 1111 1233445678899999999999999999999999
Q ss_pred ccCCCcEEEEEEcChhhHHHHHHHHHHHHh-CCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCcee
Q 006782 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTY 252 (631)
Q Consensus 174 l~~~lDlkIfVdad~d~rLiRRI~RDv~er-G~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~ 252 (631)
|+..+|.. ....++.+.+.+.+. |.+ =+++.++.+.....++.++
T Consensus 163 P~s~LD~~-------~r~~l~~~L~~l~~~~g~t---------------------------ii~vTHd~~ea~~~~Dri~ 208 (353)
T PRK10851 163 PFGALDAQ-------VRKELRRWLRQLHEELKFT---------------------------SVFVTHDQEEAMEVADRVV 208 (353)
T ss_pred CCccCCHH-------HHHHHHHHHHHHHHhcCCE---------------------------EEEEeCCHHHHHHhCCEEE
Confidence 99999983 122233333333221 322 3444444443345678888
Q ss_pred eeccCCcccHHHHHHHhcccccc
Q 006782 253 ILKSTRPVTVDEIKAVMSKEHTE 275 (631)
Q Consensus 253 iLKs~~~v~~~~Ik~vL~~~~~~ 275 (631)
+|+.++.+..+...+++.++...
T Consensus 209 vl~~G~i~~~g~~~~i~~~p~~~ 231 (353)
T PRK10851 209 VMSQGNIEQAGTPDQVWREPATR 231 (353)
T ss_pred EEECCEEEEEcCHHHHHhCccch
Confidence 88888777666666776655433
No 46
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.71 E-value=3.5e-18 Score=179.33 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=143.1
Q ss_pred ceeEeecC-ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc------ccccccc
Q 006782 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNF 112 (631)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~------~~i~~vf 112 (631)
.+++..++ ...+|++|||.+++|+ ++|++||||||||||+++|++++ |+.|.|.++|..... +.++|++
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Ge---i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGE---IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEc
Confidence 45566677 5889999999999999 99999999999999999999999 999999999975432 4689999
Q ss_pred CCCCCCchhhHHHHHHHhhcccc----------------cccccc-ccccccccCceeeeecCccEEEEeechhcccccc
Q 006782 113 DDPRLTDYDTLLENIRGLKEGKA----------------VQVPIY-DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~g~~----------------I~~Pvy-d~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~ 175 (631)
|+|.+++..|+.|+|.....-.. +..+.+ +......++|+++++..+..++-++.+++.|||+
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt 164 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 99999999999999987543111 111111 2223456778999999999999999999999999
Q ss_pred CCCcEEEEEEcChhhHHHHHHHHHHHHhC-CCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeee
Q 006782 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVG-QEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYIL 254 (631)
Q Consensus 176 ~~lDlkIfVdad~d~rLiRRI~RDv~erG-~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iL 254 (631)
..+|+ .....++.+.|++++.| .++--..|...+ ....|+.++++
T Consensus 165 ~GLDp-------~~~~~~~~~l~~l~~~g~~tvlissH~l~e---------------------------~~~~~d~v~il 210 (293)
T COG1131 165 SGLDP-------ESRREIWELLRELAKEGGVTILLSTHILEE---------------------------AEELCDRVIIL 210 (293)
T ss_pred cCCCH-------HHHHHHHHHHHHHHhCCCcEEEEeCCcHHH---------------------------HHHhCCEEEEE
Confidence 99998 34556677777777766 454333333311 12335666677
Q ss_pred ccCCcccHHHHHHHh
Q 006782 255 KSTRPVTVDEIKAVM 269 (631)
Q Consensus 255 Ks~~~v~~~~Ik~vL 269 (631)
+.+..+..+...+..
T Consensus 211 ~~G~~~~~g~~~~l~ 225 (293)
T COG1131 211 NDGKIIAEGTPEELK 225 (293)
T ss_pred eCCEEEEeCCHHHHH
Confidence 777666655555543
No 47
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.7e-18 Score=170.18 Aligned_cols=138 Identities=17% Similarity=0.148 Sum_probs=112.0
Q ss_pred cceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC---C---CceEEEECCccccc--------
Q 006782 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDSS-------- 105 (631)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll---p---~~G~I~lDg~~~~~-------- 105 (631)
..++.+-+|.+.+|++|++.++++. |.|++||||||||||+|++.... | -.|.|.++|.+...
T Consensus 10 ~~~l~~yYg~~~aL~~i~l~i~~~~---VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~l 86 (253)
T COG1117 10 VRDLNLYYGDKHALKDINLDIPKNK---VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVEL 86 (253)
T ss_pred ecceeEEECchhhhccCceeccCCc---eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHH
Confidence 3566677889999999999999999 99999999999999999999875 3 35999999975432
Q ss_pred -cccccccCCCCCCchhhHHHHHHHhhcccc---------cc---------c---cccccccccccCceeeeecCccEEE
Q 006782 106 -RIIDGNFDDPRLTDYDTLLENIRGLKEGKA---------VQ---------V---PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 -~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~---------I~---------~---Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
+.+|++||.|+-|+ +++++|++.-.+-.. ++ - ...+.+....+||+.+++..++.+.
T Consensus 87 Rr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA 165 (253)
T COG1117 87 RRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA 165 (253)
T ss_pred HHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh
Confidence 56899999999999 899999976432110 11 1 1123334467889999999999999
Q ss_pred EeechhccccccCCCcEE
Q 006782 164 IEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDlk 181 (631)
+++-.+|.|||++.+|+.
T Consensus 166 v~PeVlLmDEPtSALDPI 183 (253)
T COG1117 166 VKPEVLLMDEPTSALDPI 183 (253)
T ss_pred cCCcEEEecCcccccCch
Confidence 999999999999999984
No 48
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3.3e-18 Score=171.77 Aligned_cols=169 Identities=21% Similarity=0.254 Sum_probs=125.7
Q ss_pred ceeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------
Q 006782 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (631)
Q Consensus 33 ~~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------- 104 (631)
++++..+.+.|. +...+|++|+|.+++|+ +|+|+|+||||||||+|+|.++. |+.|.|.++|....
T Consensus 3 ~i~~~nl~k~yp---~~~~aL~~Vnl~I~~GE---~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 3 MIEVKNLSKTYP---GGHQALKDVNLEINQGE---MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred eEEEeeeeeecC---CCceeeeeEeEEeCCCc---EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 344444444441 67789999999999999 99999999999999999999988 89999999996432
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHHhhcccc------------------------ccccccc-cccccccCceeeee
Q 006782 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA------------------------VQVPIYD-FKSSSRIGYRTLEV 156 (631)
Q Consensus 105 ---~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~------------------------I~~Pvyd-~~~~~rs~~~~~~v 156 (631)
.+.+|++||++++.+..++.+|+...+-+.. +.+-.+- ....+.+||+.+++
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRV 156 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRV 156 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHH
Confidence 2568999999999999999999865332211 0000000 11256789999999
Q ss_pred cCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHH-HhCCCHHHHHHHH
Q 006782 157 PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIHQI 214 (631)
Q Consensus 157 ~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~-erG~s~e~Vi~q~ 214 (631)
+.+++++-++.++|.|||...||+. ..+-+..+.+++. +.|.|+--.+|+.
T Consensus 157 aIARaL~Q~pkiILADEPvasLDp~-------~a~~Vm~~l~~in~~~g~Tvi~nLH~v 208 (258)
T COG3638 157 AIARALVQQPKIILADEPVASLDPE-------SAKKVMDILKDINQEDGITVIVNLHQV 208 (258)
T ss_pred HHHHHHhcCCCEEecCCcccccChh-------hHHHHHHHHHHHHHHcCCEEEEEechH
Confidence 9999999999999999999999984 2233444445543 3576655444544
No 49
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.71 E-value=1.4e-17 Score=178.22 Aligned_cols=194 Identities=16% Similarity=0.150 Sum_probs=142.3
Q ss_pred cceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------cccccccc
Q 006782 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (631)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vf 112 (631)
.+++++.++...+|++|||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|+|
T Consensus 44 i~nl~k~y~~~~~l~~is~~i~~Ge---i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~ 120 (340)
T PRK13536 44 LAGVSKSYGDKAVVNGLSFTVASGE---CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP 120 (340)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEe
Confidence 3566666777889999999999999 99999999999999999999999 89999999997542 24689999
Q ss_pred CCCCCCchhhHHHHHHHhhc--ccc--------------cccc-ccccccccccCceeeeecCccEEEEeechhcccccc
Q 006782 113 DDPRLTDYDTLLENIRGLKE--GKA--------------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~--g~~--------------I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~ 175 (631)
|++.+++..++.+++..... +.. +..+ ..+...+..++|+.+++..+++++.++.+++.|||+
T Consensus 121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99999988999999875321 110 0111 123334567888999999999999999999999999
Q ss_pred CCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeec
Q 006782 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILK 255 (631)
Q Consensus 176 ~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLK 255 (631)
..+|+. ..+.++.+.+++...|.++ +++.++.+.....|+.+++|+
T Consensus 201 ~gLD~~-------~r~~l~~~l~~l~~~g~ti---------------------------lisSH~l~e~~~~~d~i~il~ 246 (340)
T PRK13536 201 TGLDPH-------ARHLIWERLRSLLARGKTI---------------------------LLTTHFMEEAERLCDRLCVLE 246 (340)
T ss_pred CCCCHH-------HHHHHHHHHHHHHhCCCEE---------------------------EEECCCHHHHHHhCCEEEEEE
Confidence 999983 3334444444443334332 223333333345678888888
Q ss_pred cCCcccHHHHHHHhc
Q 006782 256 STRPVTVDEIKAVMS 270 (631)
Q Consensus 256 s~~~v~~~~Ik~vL~ 270 (631)
.+..+..+...+++.
T Consensus 247 ~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 247 AGRKIAEGRPHALID 261 (340)
T ss_pred CCEEEEEcCHHHHHh
Confidence 887766666666554
No 50
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.1e-17 Score=180.84 Aligned_cols=197 Identities=15% Similarity=0.148 Sum_probs=140.4
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~ 114 (631)
+++++.++...+|+++||.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... .+.++|+||+
T Consensus 7 ~~l~~~~~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~ 83 (369)
T PRK11000 7 RNVTKAYGDVVISKDINLDIHEGE---FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQS 83 (369)
T ss_pred EEEEEEeCCeEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCC
Confidence 344455556679999999999999 99999999999999999999999 89999999997532 2468999999
Q ss_pred CCCCchhhHHHHHHHhhc--cc-------c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 115 PRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--g~-------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+.+|+..++.+|+..... +. . +.. ...+......++|+.+++..+++++.++.+++.|||+..
T Consensus 84 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~ 163 (369)
T PRK11000 84 YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (369)
T ss_pred cccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999999999975321 10 0 011 112334456788999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
+|.. ....++.+.+++.. .|.+ =+++.++.+.....++.+++|+.
T Consensus 164 LD~~-------~~~~l~~~L~~l~~~~g~t---------------------------vI~vTHd~~~~~~~~d~i~vl~~ 209 (369)
T PRK11000 164 LDAA-------LRVQMRIEISRLHKRLGRT---------------------------MIYVTHDQVEAMTLADKIVVLDA 209 (369)
T ss_pred CCHH-------HHHHHHHHHHHHHHHhCCE---------------------------EEEEeCCHHHHHHhCCEEEEEEC
Confidence 9973 12222333333322 1332 33444444333456777788887
Q ss_pred CCcccHHHHHHHhccccc
Q 006782 257 TRPVTVDEIKAVMSKEHT 274 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~~~~~ 274 (631)
++.+..+...+++..+..
T Consensus 210 G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 210 GRVAQVGKPLELYHYPAN 227 (369)
T ss_pred CEEEEEcCHHHHHhCccc
Confidence 776655666666655443
No 51
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=8.9e-18 Score=182.00 Aligned_cols=204 Identities=19% Similarity=0.165 Sum_probs=143.8
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~ 114 (631)
+++++.++.+.++++++|.+++|+ +++|+||||||||||+++|+|+. |+.|.|.++|.... .+.++|+||+
T Consensus 23 ~~v~~~~~~~~~l~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~ 99 (377)
T PRK11607 23 RNLTKSFDGQHAVDDVSLTIYKGE---IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQS 99 (377)
T ss_pred EeEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 344444456679999999999999 99999999999999999999999 89999999997542 2568999999
Q ss_pred CCCCchhhHHHHHHHhhc-cc--------cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 115 PRLTDYDTLLENIRGLKE-GK--------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~-g~--------~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+.+|++.++.+|+..... .+ .+ .+ +..+...+..++|+.+++..++.++.++.+++.||++..
T Consensus 100 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 100 YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999999999975322 10 00 11 123444567888999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHH-HhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~-erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
+|.. ....++...+.+. +.|.+ =+++.++.+-....++.+++|+.
T Consensus 180 LD~~-------~r~~l~~~l~~l~~~~g~t---------------------------ii~vTHd~~ea~~laDri~vl~~ 225 (377)
T PRK11607 180 LDKK-------LRDRMQLEVVDILERVGVT---------------------------CVMVTHDQEEAMTMAGRIAIMNR 225 (377)
T ss_pred CCHH-------HHHHHHHHHHHHHHhcCCE---------------------------EEEEcCCHHHHHHhCCEEEEEeC
Confidence 9973 1111222222221 12332 23333333322356777788888
Q ss_pred CCcccHHHHHHHhccccccccccee
Q 006782 257 TRPVTVDEIKAVMSKEHTETTEETY 281 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~~~~~~~~~~f~ 281 (631)
++.+..+...+++.++.......|.
T Consensus 226 G~i~~~g~~~~~~~~p~~~~~a~~~ 250 (377)
T PRK11607 226 GKFVQIGEPEEIYEHPTTRYSAEFI 250 (377)
T ss_pred CEEEEEcCHHHHHhCCccHHHHHhc
Confidence 8776666666666665544333333
No 52
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.70 E-value=8.6e-18 Score=169.64 Aligned_cols=197 Identities=17% Similarity=0.185 Sum_probs=149.2
Q ss_pred ccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc--------cccc
Q 006782 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIID 109 (631)
Q Consensus 39 v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~--------~~i~ 109 (631)
...+++..+|...+++++||.+.+|+ ++||+||||||||||+++|.|.+ |+.|.|.++|.+... ..+.
T Consensus 6 ~v~~l~k~FGGl~Al~~Vsl~v~~Ge---i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 6 EVRGLSKRFGGLTAVNDVSLEVRPGE---IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeccceeecCCEEEEeceeEEEcCCe---EEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 34677788899999999999999999 99999999999999999999999 999999999986543 3456
Q ss_pred cccCCCCCCchhhHHHHHHHhhccc-----cccc------------------------cccccccccccCceeeeecCcc
Q 006782 110 GNFDDPRLTDYDTLLENIRGLKEGK-----AVQV------------------------PIYDFKSSSRIGYRTLEVPSSR 160 (631)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~g~-----~I~~------------------------Pvyd~~~~~rs~~~~~~v~~a~ 160 (631)
-.||.+.+|+.+|+.||+.--.... .... +..+...+..+.++..++..++
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIAr 162 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIAR 162 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHH
Confidence 6899999999999999986431100 0111 1122223455666777889999
Q ss_pred EEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeC
Q 006782 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (631)
Q Consensus 161 VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N 239 (631)
.+..++.++++|||...+... +..-+..+.|++.+ .|.+ =++|-+
T Consensus 163 ALa~~P~lLLLDEPaAGln~~-------e~~~l~~~i~~i~~~~g~t---------------------------illIEH 208 (250)
T COG0411 163 ALATQPKLLLLDEPAAGLNPE-------ETEELAELIRELRDRGGVT---------------------------ILLIEH 208 (250)
T ss_pred HHhcCCCEEEecCccCCCCHH-------HHHHHHHHHHHHHhcCCcE---------------------------EEEEEe
Confidence 999999999999999998873 44444455555544 2344 345555
Q ss_pred CCCCCCCCCCceeeeccCCcccHHHHHHHhccc
Q 006782 240 KFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 240 ~~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~ 272 (631)
+++..-++|++++||..+..+..+.=.++..++
T Consensus 209 dM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp 241 (250)
T COG0411 209 DMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241 (250)
T ss_pred ccHHHhhhccEEEeccCCcCcccCCHHHHhcCH
Confidence 666667899999999999888777666666654
No 53
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.70 E-value=6.9e-18 Score=164.68 Aligned_cols=162 Identities=22% Similarity=0.249 Sum_probs=124.2
Q ss_pred eeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------
Q 006782 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------- 105 (631)
Q Consensus 34 ~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~------- 105 (631)
+.+..+.+.| ..| ..+|++|||++++|+ ++-|+||||||||||+|+|.+.. |+.|.|.++|++...
T Consensus 2 I~f~~V~k~Y--~~g-~~aL~~vs~~i~~Ge---f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 2 IRFENVSKAY--PGG-REALRDVSFHIPKGE---FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75 (223)
T ss_pred eeehhhhhhc--CCC-chhhhCceEeecCce---EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence 4455555555 333 679999999999999 89999999999999999999999 999999999986532
Q ss_pred ---cccccccCCCCCCchhhHHHHHHHhhc--cc---cccc---cc---------cccccccccCceeeeecCccEEEEe
Q 006782 106 ---RIIDGNFDDPRLTDYDTLLENIRGLKE--GK---AVQV---PI---------YDFKSSSRIGYRTLEVPSSRIVIIE 165 (631)
Q Consensus 106 ---~~i~~vfq~p~l~d~~tl~e~L~~L~~--g~---~I~~---Pv---------yd~~~~~rs~~~~~~v~~a~VLIvE 165 (631)
+.+|++||++.+.+..+++||++.... |. .+.. .. ...-..+.++|+.++++.+++++-.
T Consensus 76 ~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~ 155 (223)
T COG2884 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQ 155 (223)
T ss_pred hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccC
Confidence 679999999999999999999986443 11 1110 01 1122346789999999999999999
Q ss_pred echhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHH
Q 006782 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (631)
Q Consensus 166 Gi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e 208 (631)
+.+++.|||+..+|.- .-.-+.++..++.+.|.|+-
T Consensus 156 P~vLlADEPTGNLDp~-------~s~~im~lfeeinr~GtTVl 191 (223)
T COG2884 156 PAVLLADEPTGNLDPD-------LSWEIMRLFEEINRLGTTVL 191 (223)
T ss_pred CCeEeecCCCCCCChH-------HHHHHHHHHHHHhhcCcEEE
Confidence 9999999999999972 11223444555566676653
No 54
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.9e-17 Score=165.80 Aligned_cols=137 Identities=20% Similarity=0.233 Sum_probs=109.0
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------cccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDG 110 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~ 110 (631)
++++.++...+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.+++
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 81 (235)
T cd03261 5 GLTKSFGGRTVLKGVDLDVRRGE---ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGM 81 (235)
T ss_pred EEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEE
Confidence 34455556679999999999999 99999999999999999999999 89999999996432 135789
Q ss_pred ccCCCCCCchhhHHHHHHHhhc---cc---c-----------cccc-ccccccccccCceeeeecCccEEEEeechhccc
Q 006782 111 NFDDPRLTDYDTLLENIRGLKE---GK---A-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~---g~---~-----------I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
++|++.+++..++.+++..... +. . +..+ ..+...+..++|+.+++..+++++.++.+++.|
T Consensus 82 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllD 161 (235)
T cd03261 82 LFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYD 161 (235)
T ss_pred EccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 9999999988899999865321 00 0 0111 123334567889999999999999999999999
Q ss_pred cccCCCcEE
Q 006782 173 KLRPLIDLR 181 (631)
Q Consensus 173 El~~~lDlk 181 (631)
||+..+|..
T Consensus 162 EPt~~LD~~ 170 (235)
T cd03261 162 EPTAGLDPI 170 (235)
T ss_pred CCcccCCHH
Confidence 999999983
No 55
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.70 E-value=2.8e-18 Score=168.69 Aligned_cols=141 Identities=19% Similarity=0.269 Sum_probs=112.3
Q ss_pred eeeeeccceeEeecCce-eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc------
Q 006782 34 YEIVPIEDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------ 105 (631)
Q Consensus 34 ~ei~~v~~~ls~~~g~~-~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~------ 105 (631)
+++..+.++| +.. .++++++|+++.|+ |+||.|+|||||||++|+|+.++ |+.|.|.+||++...
T Consensus 2 l~v~~l~K~y----~~~v~AvrdVSF~ae~Ge---i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSY----GSKVQAVRDVSFEAEEGE---ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhc----cCHHhhhhheeEEeccce---EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHh
Confidence 3444455554 333 48999999999999 99999999999999999999999 999999999986432
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhcc-----ccccc------------cccccccccccCceeeeecCccEEEEeech
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKEG-----KAVQV------------PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~g-----~~I~~------------Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~ 168 (631)
+.++..|....+|+.+|++|||.....- ..+.. ...+......+.|.++++..++.++-++..
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 6789999888999999999999865431 11111 122333345566788899999999999999
Q ss_pred hccccccCCCcEE
Q 006782 169 ALSEKLRPLIDLR 181 (631)
Q Consensus 169 lL~dEl~~~lDlk 181 (631)
++.|||++.+|+.
T Consensus 155 ~vlDEP~sGLDi~ 167 (245)
T COG4555 155 LVLDEPTSGLDIR 167 (245)
T ss_pred EEEcCCCCCccHH
Confidence 9999999999983
No 56
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=7.2e-17 Score=165.17 Aligned_cols=164 Identities=17% Similarity=0.176 Sum_probs=119.7
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----ccccccccCCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDDP 115 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----~~~i~~vfq~p 115 (631)
+++++.++..+||++|+|.+++|+ +++|+||||||||||+|+|.|++ |..|.|.+.+.... ...++|++|..
T Consensus 8 ~nl~v~y~~~~vl~~i~l~v~~G~---~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~ 84 (254)
T COG1121 8 ENLTVSYGNRPVLEDISLSVEKGE---ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKS 84 (254)
T ss_pred eeeEEEECCEeeeeccEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCccc
Confidence 344455554369999999999999 99999999999999999999998 99999999997533 24699999965
Q ss_pred --CCCchhhHHHHHHHhhcccc--------------------ccc-cccccccccccCceeeeecCccEEEEeechhccc
Q 006782 116 --RLTDYDTLLENIRGLKEGKA--------------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 116 --~l~d~~tl~e~L~~L~~g~~--------------------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
+.-...++.+.+..-+..+. +.+ -..+...+..+||+.+++-.|++++-++.++++|
T Consensus 85 ~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD 164 (254)
T COG1121 85 SVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD 164 (254)
T ss_pred ccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec
Confidence 22234588888865322111 111 1234445778999999999999999999999999
Q ss_pred cccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 006782 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (631)
Q Consensus 173 El~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~ 214 (631)
||+..+|.+ ....+-++..++++.|.++-.|.|..
T Consensus 165 EP~~gvD~~-------~~~~i~~lL~~l~~eg~tIl~vtHDL 199 (254)
T COG1121 165 EPFTGVDVA-------GQKEIYDLLKELRQEGKTVLMVTHDL 199 (254)
T ss_pred CCcccCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 999999985 22233344444544476654444433
No 57
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.69 E-value=2e-17 Score=173.85 Aligned_cols=184 Identities=15% Similarity=0.156 Sum_probs=132.0
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccCCCCCCch
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLTDY 120 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq~p~l~d~ 120 (631)
+...+|+++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.+++++|++.+++.
T Consensus 4 ~~~~~l~~vs~~i~~Ge---~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGE---VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CCeeEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 45679999999999999 99999999999999999999999 89999999997532 2358999999999998
Q ss_pred hhHHHHHHHhhc--ccc--------------cccc-ccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEE
Q 006782 121 DTLLENIRGLKE--GKA--------------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (631)
Q Consensus 121 ~tl~e~L~~L~~--g~~--------------I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIf 183 (631)
.++.+++..... +.. +... ..+...+..++|+++++..+++++.++.+++.|||+..+|..
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~-- 158 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR-- 158 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH--
Confidence 999999875321 100 0111 123334567889999999999999999999999999999983
Q ss_pred EEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCcccHH
Q 006782 184 VTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVD 263 (631)
Q Consensus 184 Vdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~v~~~ 263 (631)
..+.++.+.+.+.+.|.++ +++.++.+.....|+.+++|+.++.+..+
T Consensus 159 -----~~~~l~~~l~~~~~~g~tv---------------------------i~~sH~~~~~~~~~d~v~~l~~G~i~~~g 206 (302)
T TIGR01188 159 -----TRRAIWDYIRALKEEGVTI---------------------------LLTTHYMEEADKLCDRIAIIDHGRIIAEG 206 (302)
T ss_pred -----HHHHHHHHHHHHHhCCCEE---------------------------EEECCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 3334444444444334332 22233333223456777777777655444
Q ss_pred HHHHH
Q 006782 264 EIKAV 268 (631)
Q Consensus 264 ~Ik~v 268 (631)
...++
T Consensus 207 ~~~~l 211 (302)
T TIGR01188 207 TPEEL 211 (302)
T ss_pred CHHHH
Confidence 44443
No 58
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.69 E-value=2.8e-17 Score=172.73 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=110.1
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFD 113 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq 113 (631)
+++++.++...+|+++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|++|
T Consensus 8 ~~l~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 84 (303)
T TIGR01288 8 VGVSKSYGDKVVVNDLSFTIARGE---CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQ 84 (303)
T ss_pred EeEEEEeCCeEEEcceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEec
Confidence 444555566779999999999999 89999999999999999999998 89999999987532 246899999
Q ss_pred CCCCCchhhHHHHHHHhhc--ccc--------------ccc-cccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 114 DPRLTDYDTLLENIRGLKE--GKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--g~~--------------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
++.+++..++.+++..... +.. +.. ...+...+..++|+.+++..+++++.++.+++.|||+.
T Consensus 85 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 85 FDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred cccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999888899999864221 100 011 11233445678899999999999999999999999999
Q ss_pred CCcE
Q 006782 177 LIDL 180 (631)
Q Consensus 177 ~lDl 180 (631)
.+|.
T Consensus 165 gLD~ 168 (303)
T TIGR01288 165 GLDP 168 (303)
T ss_pred CCCH
Confidence 9998
No 59
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=3.5e-17 Score=165.77 Aligned_cols=138 Identities=21% Similarity=0.226 Sum_probs=108.8
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~ 114 (631)
+++++.++...++++++|.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|++|+
T Consensus 6 ~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 82 (239)
T cd03296 6 RNVSKRFGDFVALDDVSLDIPSGE---LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQH 82 (239)
T ss_pred EeEEEEECCEEeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecC
Confidence 344455555779999999999999 99999999999999999999998 89999999997432 2458899999
Q ss_pred CCCCchhhHHHHHHHhhc--cc-----------cc-------cc-cccccccccccCceeeeecCccEEEEeechhcccc
Q 006782 115 PRLTDYDTLLENIRGLKE--GK-----------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--g~-----------~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dE 173 (631)
+.+++..++.+++..... +. .+ .. ...+......++|+.+++..+++++.++.+++.||
T Consensus 83 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 162 (239)
T cd03296 83 YALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 162 (239)
T ss_pred CcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 998888899999864211 00 00 01 11223335678889999999999999999999999
Q ss_pred ccCCCcEE
Q 006782 174 LRPLIDLR 181 (631)
Q Consensus 174 l~~~lDlk 181 (631)
|+..+|..
T Consensus 163 P~~~LD~~ 170 (239)
T cd03296 163 PFGALDAK 170 (239)
T ss_pred CcccCCHH
Confidence 99999983
No 60
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.68 E-value=1.7e-17 Score=160.71 Aligned_cols=164 Identities=21% Similarity=0.251 Sum_probs=129.8
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---------------
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------------- 104 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------------- 104 (631)
.++...+|...||++||+....|+ +|.|+|.||||||||++||.-+. |..|.|.++|....
T Consensus 10 ~dlHK~~G~~eVLKGvSL~A~~Gd---VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~ 86 (256)
T COG4598 10 EDLHKRYGEHEVLKGVSLQANAGD---VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKR 86 (256)
T ss_pred hHHHhhcccchhhcceeeecCCCC---EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHH
Confidence 455567788999999999999999 99999999999999999999887 99999999986321
Q ss_pred -----ccccccccCCCCCCchhhHHHHHHHhh-----c--ccccc--------cccc---ccccccccCceeeeecCccE
Q 006782 105 -----SRIIDGNFDDPRLTDYDTLLENIRGLK-----E--GKAVQ--------VPIY---DFKSSSRIGYRTLEVPSSRI 161 (631)
Q Consensus 105 -----~~~i~~vfq~p~l~d~~tl~e~L~~L~-----~--g~~I~--------~Pvy---d~~~~~rs~~~~~~v~~a~V 161 (631)
+..++++||++++|.++|+.+|+-..- . .+.++ +-.+ +......++++.+++..++.
T Consensus 87 q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARa 166 (256)
T COG4598 87 QLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARA 166 (256)
T ss_pred HHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHH
Confidence 024689999999999999999985311 0 01010 1111 22234567889999999999
Q ss_pred EEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 006782 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (631)
Q Consensus 162 LIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~ 214 (631)
+.+|+..+|.||+++.+|+ +-+--.-++.||+.+.|+|..-|+|.+
T Consensus 167 LameP~vmLFDEPTSALDP-------ElVgEVLkv~~~LAeEgrTMv~VTHEM 212 (256)
T COG4598 167 LAMEPEVMLFDEPTSALDP-------ELVGEVLKVMQDLAEEGRTMVVVTHEM 212 (256)
T ss_pred HhcCCceEeecCCcccCCH-------HHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 9999999999999999997 344456688899999999987777776
No 61
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.68 E-value=3.2e-17 Score=174.68 Aligned_cols=213 Identities=15% Similarity=0.217 Sum_probs=150.0
Q ss_pred CceeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEEECCccccc--
Q 006782 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDSS-- 105 (631)
Q Consensus 32 ~~~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~---~G~I~lDg~~~~~-- 105 (631)
.++++..+...|....+...++++|||.+.+|+ ++||+|+||||||||+++|++++ |. .|.|.++|.+...
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGE---TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 355666666555333345679999999999999 99999999999999999999999 64 8999999975421
Q ss_pred ---------cccccccCCC--CCCchhhHHHHHHHhh---cc--------------cccccc----ccccccccccCcee
Q 006782 106 ---------RIIDGNFDDP--RLTDYDTLLENIRGLK---EG--------------KAVQVP----IYDFKSSSRIGYRT 153 (631)
Q Consensus 106 ---------~~i~~vfq~p--~l~d~~tl~e~L~~L~---~g--------------~~I~~P----vyd~~~~~rs~~~~ 153 (631)
+.++++||++ .+++..++.+++.... .+ +.+..+ ..+...++.++|+.
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 3589999998 4666677777664211 11 011122 12345577889999
Q ss_pred eeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCC
Q 006782 154 LEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQT 232 (631)
Q Consensus 154 ~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ 232 (631)
+++..++.++.++.+++.||++..+|.. ....+..+.+++.+ .|.
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~-------~~~~i~~lL~~l~~~~g~--------------------------- 213 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVT-------VQAQIMTLLNELKREFNT--------------------------- 213 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHHHHcCC---------------------------
Confidence 9999999999999999999999999983 22222333333322 132
Q ss_pred CeEEEeCCCCCCCCCCCceeeeccCCcccHHHHHHHhccccccccccee
Q 006782 233 AHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETY 281 (631)
Q Consensus 233 ADiII~N~~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~~~f~ 281 (631)
+=++|.++.+....+++.+++|+.++.+..+...+++..+....++.+.
T Consensus 214 til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~~pyt~~l~ 262 (330)
T PRK09473 214 AIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSIGLL 262 (330)
T ss_pred EEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHH
Confidence 3455555655545678889999999888888888887766554444433
No 62
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=4.7e-17 Score=162.66 Aligned_cols=136 Identities=21% Similarity=0.206 Sum_probs=108.2
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccCCC
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDP 115 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq~p 115 (631)
+++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++|+||++
T Consensus 6 ~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (220)
T cd03265 6 LVKKYGDFEAVRGVSFRVRRGE---IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDL 82 (220)
T ss_pred EEEEECCEEeeeceeEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCc
Confidence 3344455679999999999999 99999999999999999999998 89999999996532 23578999999
Q ss_pred CCCchhhHHHHHHHhhc--cc-------c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCC
Q 006782 116 RLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~--g~-------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
.+++..++.+++..... +. . +.. +..+......++|+.+++..+++++.++.+++.|||+..+
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~L 162 (220)
T cd03265 83 SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGL 162 (220)
T ss_pred cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 98888899998864211 10 0 011 1123334567888999999999999999999999999999
Q ss_pred cEE
Q 006782 179 DLR 181 (631)
Q Consensus 179 Dlk 181 (631)
|..
T Consensus 163 D~~ 165 (220)
T cd03265 163 DPQ 165 (220)
T ss_pred CHH
Confidence 983
No 63
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=1.2e-17 Score=168.31 Aligned_cols=193 Identities=18% Similarity=0.166 Sum_probs=148.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc---cccccccCCCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS---RIIDGNFDDPR 116 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~---~~i~~vfq~p~ 116 (631)
++++..+|.+.|+++|||.+++|+ +.|++|+|||||||.+|+|.+++ |+.|.|.++|..... .+|||.+.+-.
T Consensus 6 e~vtK~Fg~k~av~~isf~v~~G~---i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERG 82 (300)
T COG4152 6 EGVTKSFGDKKAVDNISFEVPPGE---IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERG 82 (300)
T ss_pred ecchhccCceeeecceeeeecCCe---EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhc
Confidence 445566688999999999999999 99999999999999999999999 899999999976543 57999999999
Q ss_pred CCchhhHHHHHHHhhcccccc-----------cc---ccccc---cccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 117 LTDYDTLLENIRGLKEGKAVQ-----------VP---IYDFK---SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 117 l~d~~tl~e~L~~L~~g~~I~-----------~P---vyd~~---~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
+|+.+++.+.|..+..-+.+. .. ++.+. ..+.+.|..+.+..-..++-|+-++++|||++.+|
T Consensus 83 Ly~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLD 162 (300)
T COG4152 83 LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLD 162 (300)
T ss_pred cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 999999999998765422111 11 11111 23455556666666667899999999999999999
Q ss_pred EEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCc
Q 006782 180 LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRP 259 (631)
Q Consensus 180 lkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~ 259 (631)
+ ..+.+++....+.+++|.|+--..|++.+. ...|+.+.+||-+..
T Consensus 163 P-------VN~elLk~~I~~lk~~GatIifSsH~Me~v---------------------------EeLCD~llmL~kG~~ 208 (300)
T COG4152 163 P-------VNVELLKDAIFELKEEGATIIFSSHRMEHV---------------------------EELCDRLLMLKKGQT 208 (300)
T ss_pred h-------hhHHHHHHHHHHHHhcCCEEEEecchHHHH---------------------------HHHhhhhheecCCce
Confidence 8 578899999999999998765555555221 245677777777777
Q ss_pred ccHHHHHHHhc
Q 006782 260 VTVDEIKAVMS 270 (631)
Q Consensus 260 v~~~~Ik~vL~ 270 (631)
+..+.+..+=.
T Consensus 209 V~~G~v~~ir~ 219 (300)
T COG4152 209 VLYGTVEDIRR 219 (300)
T ss_pred EEeccHHHHHH
Confidence 77666655543
No 64
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.68 E-value=2.8e-17 Score=177.23 Aligned_cols=191 Identities=18% Similarity=0.144 Sum_probs=138.5
Q ss_pred cCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------ccccccccCC
Q 006782 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDD 114 (631)
Q Consensus 47 ~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~vfq~ 114 (631)
++...+++++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.+.. .+.++|+||+
T Consensus 3 ~~~~~~l~~vs~~i~~Ge---i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGE---IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred cCCceeEEeeEEEEcCCC---EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 355678999999999999 99999999999999999999999 89999999997533 2468999999
Q ss_pred CCCCchhhHHHHHHHhhc--cc--------------ccccc-ccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 115 PRLTDYDTLLENIRGLKE--GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--g~--------------~I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+.+|+..++.+|+..... +. .+.+. ..+...++.++|+.+++..++.++.++.+++.||++..
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999999999975321 10 01111 23344567888999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
+|.. ..+.+..+.+++.. .|.| =+++.++.+-....++.+++|+.
T Consensus 160 LD~~-------~r~~l~~~l~~l~~~~~~T---------------------------ii~vTHd~~ea~~~~drI~vl~~ 205 (363)
T TIGR01186 160 LDPL-------IRDSMQDELKKLQATLQKT---------------------------IVFITHDLDEAIRIGDRIVIMKA 205 (363)
T ss_pred CCHH-------HHHHHHHHHHHHHHhcCCE---------------------------EEEEeCCHHHHHHhCCEEEEEeC
Confidence 9983 11122222222221 1322 34444454443456788888888
Q ss_pred CCcccHHHHHHHhccccc
Q 006782 257 TRPVTVDEIKAVMSKEHT 274 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~~~~~ 274 (631)
++.+..+.-.+++.++..
T Consensus 206 G~iv~~g~~~ei~~~p~~ 223 (363)
T TIGR01186 206 GEIVQVGTPDEILRNPAN 223 (363)
T ss_pred CEEEeeCCHHHHHhCccc
Confidence 877665666666655433
No 65
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.68 E-value=6.3e-17 Score=162.71 Aligned_cols=137 Identities=23% Similarity=0.232 Sum_probs=108.4
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------cccccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNF 112 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vf 112 (631)
++++.++...+++++||.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... ...+++++
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (232)
T cd03218 5 NLSKRYGKRKVVNGVSLSVKQGE---IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLP 81 (232)
T ss_pred EEEEEeCCEEeeccceeEecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEec
Confidence 34445555679999999999999 89999999999999999999998 89999999987432 13478999
Q ss_pred CCCCCCchhhHHHHHHHhhc--cc-------c-------ccc-cccccccccccCceeeeecCccEEEEeechhcccccc
Q 006782 113 DDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~--g~-------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~ 175 (631)
|++.+++..++.+++..... +. . +.. ...+...+..++|+.+++..+++++.++.+++.|||+
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 161 (232)
T cd03218 82 QEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPF 161 (232)
T ss_pred CCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 99999988899999864321 10 0 001 1123334567788999999999999999999999999
Q ss_pred CCCcEE
Q 006782 176 PLIDLR 181 (631)
Q Consensus 176 ~~lDlk 181 (631)
..+|..
T Consensus 162 ~~LD~~ 167 (232)
T cd03218 162 AGVDPI 167 (232)
T ss_pred ccCCHH
Confidence 999983
No 66
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.67 E-value=8.5e-17 Score=160.26 Aligned_cols=128 Identities=21% Similarity=0.220 Sum_probs=104.3
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------ccccccccCCCCC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPRL 117 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~vfq~p~l 117 (631)
..+++++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.+++++|++.+
T Consensus 17 ~~il~~~s~~i~~G~---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGE---FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCC---EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 679999999999999 89999999999999999999999 89999999986432 1358899999999
Q ss_pred CchhhHHHHHHHhhc--cc-------cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 TDYDTLLENIRGLKE--GK-------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~--g~-------~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++..++.+++..... +. .+ .. +..+...+..++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~ 173 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCH
Confidence 888899999865321 10 00 01 112333456788899999999999999999999999999997
No 67
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.67 E-value=2.8e-17 Score=182.62 Aligned_cols=213 Identities=17% Similarity=0.240 Sum_probs=160.8
Q ss_pred ceeeeeccceeEee-------cCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccc-
Q 006782 33 RYEIVPIEDTLSFE-------KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND- 103 (631)
Q Consensus 33 ~~ei~~v~~~ls~~-------~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~- 103 (631)
..++..+.+.|... .+...++++|||.+.+|+ ++||+|+||||||||+|+|++++ |+.|.|.++|.+.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE---~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE---TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 34456666666532 245689999999999999 99999999999999999999999 8999999999651
Q ss_pred -c-------ccccccccCCCC--CCchhhHHHHHHHhhc--c---------------cccccc--ccccccccccCceee
Q 006782 104 -S-------SRIIDGNFDDPR--LTDYDTLLENIRGLKE--G---------------KAVQVP--IYDFKSSSRIGYRTL 154 (631)
Q Consensus 104 -~-------~~~i~~vfq~p~--l~d~~tl~e~L~~L~~--g---------------~~I~~P--vyd~~~~~rs~~~~~ 154 (631)
. .+.+.++||||. +.+..|+.+.+..... + +.+..| ..+...++.+||+++
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 1 145778999985 5778888888865322 0 012222 366777899999999
Q ss_pred eecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCe
Q 006782 155 EVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAH 234 (631)
Q Consensus 155 ~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~AD 234 (631)
++..+++++.++.++++||+.+.+|..+-.. -+.++.+++++. | .+=
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~---VlnLl~~lq~e~---g---------------------------~t~ 483 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQ---VLNLLKDLQEEL---G---------------------------LTY 483 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHH---HHHHHHHHHHHh---C---------------------------CEE
Confidence 9999999999999999999999999842111 122333333322 3 235
Q ss_pred EEEeCCCCCCCCCCCceeeeccCCcccHHHHHHHhccccccccccee
Q 006782 235 IKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETY 281 (631)
Q Consensus 235 iII~N~~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~~~f~ 281 (631)
+.|.++.+....+|++|++|+.++.++.+....++..+..+.++...
T Consensus 484 lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 484 LFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred EEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHH
Confidence 66777777778999999999999999999999999887766655443
No 68
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.67 E-value=4.6e-17 Score=164.09 Aligned_cols=136 Identities=18% Similarity=0.222 Sum_probs=107.5
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------cccccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNF 112 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vf 112 (631)
++++.++...++++++|.+++|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... ...++|+|
T Consensus 5 ~l~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 81 (236)
T cd03219 5 GLTKRFGGLVALDDVSFSVRPGE---IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTF 81 (236)
T ss_pred eeEEEECCEEEecCceEEecCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEe
Confidence 34444555679999999999999 89999999999999999999998 89999999997432 13478999
Q ss_pred CCCCCCchhhHHHHHHHhhc--cc-----------------cc-------cc-cccccccccccCceeeeecCccEEEEe
Q 006782 113 DDPRLTDYDTLLENIRGLKE--GK-----------------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~--g~-----------------~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvE 165 (631)
|++.+++..++.+++..... +. .+ .. ...+...++.++|+.+++..+++++.+
T Consensus 82 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 161 (236)
T cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD 161 (236)
T ss_pred cccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999988899999864321 00 00 01 112333456788899999999999999
Q ss_pred echhccccccCCCcE
Q 006782 166 GIYALSEKLRPLIDL 180 (631)
Q Consensus 166 Gi~lL~dEl~~~lDl 180 (631)
+.+++.|||+..+|.
T Consensus 162 p~llllDEPt~~LD~ 176 (236)
T cd03219 162 PKLLLLDEPAAGLNP 176 (236)
T ss_pred CCEEEEcCCcccCCH
Confidence 999999999999997
No 69
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.67 E-value=4.5e-17 Score=173.71 Aligned_cols=188 Identities=17% Similarity=0.222 Sum_probs=138.7
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------ccccccccCCC--
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDP-- 115 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~vfq~p-- 115 (631)
...++++|||.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.++|.+.. .+.++|+||+|
T Consensus 33 ~~~~l~~vsl~i~~Ge---~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 33 TLKAVDGVTLRLYEGE---TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred ceEEEeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 3679999999999999 99999999999999999999999 89999999997532 14589999998
Q ss_pred CCCchhhHHHHHHHhhc----c---c-----------cccc-c-ccccccccccCceeeeecCccEEEEeechhcccccc
Q 006782 116 RLTDYDTLLENIRGLKE----G---K-----------AVQV-P-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~----g---~-----------~I~~-P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~ 175 (631)
.+++..++.+++..... + . .+.. + ..+...++.++|+.+++..+++++.++.+++.||++
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPt 189 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPV 189 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 46777889998864211 0 0 1112 2 235556788999999999999999999999999999
Q ss_pred CCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeee
Q 006782 176 PLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYIL 254 (631)
Q Consensus 176 ~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iL 254 (631)
..+|.. ....+..+.+++.+ .|. +=++|.++.+....+++.+++|
T Consensus 190 s~LD~~-------~~~~i~~lL~~l~~~~~~---------------------------til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 190 SALDVS-------IQAQVVNLLQQLQREMGL---------------------------SLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred ccCCHH-------HHHHHHHHHHHHHHHcCC---------------------------EEEEEeCCHHHHHHhCCEEEEE
Confidence 999983 22223333333322 132 2455555555555677888888
Q ss_pred ccCCcccHHHHHHHhcccc
Q 006782 255 KSTRPVTVDEIKAVMSKEH 273 (631)
Q Consensus 255 Ks~~~v~~~~Ik~vL~~~~ 273 (631)
..++.+..+...+++.++.
T Consensus 236 ~~G~ive~g~~~~i~~~~~ 254 (331)
T PRK15079 236 YLGHAVELGTYDEVYHNPL 254 (331)
T ss_pred ECCEEEEEcCHHHHHcCCC
Confidence 8887777677777766543
No 70
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=5.2e-17 Score=163.55 Aligned_cols=128 Identities=21% Similarity=0.247 Sum_probs=103.8
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------ccccccccCCCCCCc
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPRLTD 119 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~vfq~p~l~d 119 (631)
.++++++|.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGE---IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 79999999999999 99999999999999999999999 89999999997532 235789999999998
Q ss_pred hhhHHHHHHHhhc--cc-------c-------cccc-ccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 120 YDTLLENIRGLKE--GK-------A-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 120 ~~tl~e~L~~L~~--g~-------~-------I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
..++.+++..... +. . ...+ ..+......++|+.+++..++.++.++.+++.|||+..+|..
T Consensus 96 ~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~ 174 (233)
T cd03258 96 SRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174 (233)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHH
Confidence 8899999864221 10 0 0111 123334567788999999999999999999999999999983
No 71
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.67 E-value=7.4e-17 Score=160.64 Aligned_cols=128 Identities=21% Similarity=0.221 Sum_probs=104.6
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------ccccccccCCCCCC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPRLT 118 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~vfq~p~l~ 118 (631)
..+++++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.+++++|++.++
T Consensus 16 ~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGE---MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 469999999999999 89999999999999999999998 89999999986431 13588999999998
Q ss_pred chhhHHHHHHHhhc--cc--------------cccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 119 DYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 119 d~~tl~e~L~~L~~--g~--------------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+..++.+++..... +. .+.. +..+...+..++|+.+++..+++++.++.+++.|||++.+|.
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~ 171 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDP 171 (216)
T ss_pred ccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCH
Confidence 88899999864311 10 0111 112333456788999999999999999999999999999997
No 72
>PRK07667 uridine kinase; Provisional
Probab=99.67 E-value=2e-16 Score=156.06 Aligned_cols=163 Identities=17% Similarity=0.317 Sum_probs=119.0
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC----CCceEEEECCccccccc-cccccCCC-----CCCchhhHHHH-HHHhhcc
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDSSRI-IDGNFDDP-----RLTDYDTLLEN-IRGLKEG 133 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll----p~~G~I~lDg~~~~~~~-i~~vfq~p-----~l~d~~tl~e~-L~~L~~g 133 (631)
.+++|||.|++||||||+++.|...+ .....+++|+|...... ....+.+. ..++...+.+. +..++.+
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 45799999999999999999999987 24568999998643211 00011111 12444455554 4677788
Q ss_pred ccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHH
Q 006782 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (631)
Q Consensus 134 ~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q 213 (631)
+.+.+|.|++..+.... ....+++.+++|+||++++..++.+.+|.+|||++|.++++.|.+.|+ |.+. .+
T Consensus 96 ~~i~~P~~d~~~~~~~~-~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~----~~~~----~~ 166 (193)
T PRK07667 96 TKLTLPFYHDETDTCEM-KKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEET----QKNL----SK 166 (193)
T ss_pred CeEEEeeeccccccccc-cceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhccc----HhHH----HH
Confidence 89999999999876543 333456789999999999888899999999999999999887776643 3343 45
Q ss_pred HHhccccchhhccc---CCCCCCeEEE
Q 006782 214 ISETVYPMYKAFIE---PDLQTAHIKI 237 (631)
Q Consensus 214 ~~~~v~P~~~~fIe---P~k~~ADiII 237 (631)
|..+..|++..|++ | +..||+||
T Consensus 167 ~~~r~~~a~~~y~~~~~~-~~~ad~i~ 192 (193)
T PRK07667 167 FKNRYWKAEDYYLETESP-KDRADLVI 192 (193)
T ss_pred HHHHhHHHHHHHHhhcCh-HhhCcEEe
Confidence 55555678888865 5 88999997
No 73
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=6.3e-17 Score=160.80 Aligned_cols=136 Identities=23% Similarity=0.219 Sum_probs=107.7
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDP 115 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~p 115 (631)
++++.++...+++++||.+++|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.+++++|++
T Consensus 5 ~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 81 (213)
T cd03259 5 GLSKTYGSVRALDDLSLTVEPGE---FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDY 81 (213)
T ss_pred eeEEEeCCeeeecceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCch
Confidence 33444455679999999999999 89999999999999999999998 89999999987532 24588999999
Q ss_pred CCCchhhHHHHHHHhhc--c---c----c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCC
Q 006782 116 RLTDYDTLLENIRGLKE--G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~--g---~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
.+++..++.+++..... + . . ... ...+......++|+.+++..+++++.++.+++.|||+..+
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~L 161 (213)
T cd03259 82 ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSAL 161 (213)
T ss_pred hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 98888899998864211 0 0 0 011 1123333567888999999999999999999999999999
Q ss_pred cE
Q 006782 179 DL 180 (631)
Q Consensus 179 Dl 180 (631)
|.
T Consensus 162 D~ 163 (213)
T cd03259 162 DA 163 (213)
T ss_pred CH
Confidence 97
No 74
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.67 E-value=6.2e-17 Score=163.89 Aligned_cols=192 Identities=16% Similarity=0.145 Sum_probs=133.9
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---------ccccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDGN 111 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---------~~~i~~v 111 (631)
++++.++...+++++||.+.+|+ ++||+|+||||||||+++|+|.+ |+.|.|.++|.... .+.++|+
T Consensus 6 ~l~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 82 (240)
T PRK09493 6 NVSKHFGPTQVLHNIDLNIDQGE---VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMV 82 (240)
T ss_pred eEEEEECCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEE
Confidence 33444455679999999999999 99999999999999999999998 89999999997532 1357899
Q ss_pred cCCCCCCchhhHHHHHHHhh---ccc--------------cccc-cccccccccccCceeeeecCccEEEEeechhcccc
Q 006782 112 FDDPRLTDYDTLLENIRGLK---EGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~---~g~--------------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dE 173 (631)
+|++.+++..++.+++.... .+. .... +..+......++|+.+++..+++++.++.+++.||
T Consensus 83 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 162 (240)
T PRK09493 83 FQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE 162 (240)
T ss_pred ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99998888889999886421 110 0001 12233345677889999999999999999999999
Q ss_pred ccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceee
Q 006782 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYI 253 (631)
Q Consensus 174 l~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~i 253 (631)
|+..+|.. ....+.++.+++.+.|.+ =+++.++.+.....++.+++
T Consensus 163 P~~~LD~~-------~~~~l~~~l~~~~~~~~t---------------------------iii~sH~~~~~~~~~d~i~~ 208 (240)
T PRK09493 163 PTSALDPE-------LRHEVLKVMQDLAEEGMT---------------------------MVIVTHEIGFAEKVASRLIF 208 (240)
T ss_pred CcccCCHH-------HHHHHHHHHHHHHHcCCE---------------------------EEEEeCCHHHHHHhCCEEEE
Confidence 99999983 222333333333322322 34444444443456777777
Q ss_pred eccCCcccHHHHHHHhc
Q 006782 254 LKSTRPVTVDEIKAVMS 270 (631)
Q Consensus 254 LKs~~~v~~~~Ik~vL~ 270 (631)
|+.++.+..+...+++.
T Consensus 209 l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 209 IDKGRIAEDGDPQVLIK 225 (240)
T ss_pred EECCEEEeeCCHHHHhc
Confidence 87776654444444443
No 75
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.67 E-value=8.6e-17 Score=160.49 Aligned_cols=136 Identities=15% Similarity=0.131 Sum_probs=107.5
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------cccccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNF 112 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vf 112 (631)
++++.++...++++++|.+.+|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.++++|
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (222)
T cd03224 5 NLNAGYGKSQILFGVSLTVPEGE---IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVP 81 (222)
T ss_pred eEEeecCCeeEeeeeeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEec
Confidence 33444455679999999999999 99999999999999999999999 89999999996432 23588999
Q ss_pred CCCCCCchhhHHHHHHHhhcc--c-----c-------c-cc-cccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 113 DDPRLTDYDTLLENIRGLKEG--K-----A-------V-QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~g--~-----~-------I-~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
|++.+++..++.+++...... . . + .. ...+......++|+.+++..+++++.++.+++.|||+.
T Consensus 82 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 161 (222)
T cd03224 82 EGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE 161 (222)
T ss_pred cccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 999999888999998643210 0 0 0 00 11233344677889999999999999999999999999
Q ss_pred CCcE
Q 006782 177 LIDL 180 (631)
Q Consensus 177 ~lDl 180 (631)
.+|.
T Consensus 162 ~LD~ 165 (222)
T cd03224 162 GLAP 165 (222)
T ss_pred cCCH
Confidence 9997
No 76
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=6.4e-17 Score=172.21 Aligned_cols=206 Identities=12% Similarity=0.189 Sum_probs=146.8
Q ss_pred ceeeeeccceeEeecC------ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-
Q 006782 33 RYEIVPIEDTLSFEKG------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS- 104 (631)
Q Consensus 33 ~~ei~~v~~~ls~~~g------~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~- 104 (631)
++++..+...|....+ ...+|++|+|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.+..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGK---TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCc
Confidence 4555566555532211 3579999999999999 99999999999999999999999 88999999997532
Q ss_pred ---------ccccccccCCC--CCCchhhHHHHHHHhh-c--c--------------ccccc--cccccccccccCceee
Q 006782 105 ---------SRIIDGNFDDP--RLTDYDTLLENIRGLK-E--G--------------KAVQV--PIYDFKSSSRIGYRTL 154 (631)
Q Consensus 105 ---------~~~i~~vfq~p--~l~d~~tl~e~L~~L~-~--g--------------~~I~~--Pvyd~~~~~rs~~~~~ 154 (631)
.+.++++||+| .+++..++.+++.... . + +.+.. ..++...++.++|+.+
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q 161 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence 13589999998 4666667777764311 0 0 01112 1356666788999999
Q ss_pred eecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCC
Q 006782 155 EVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTA 233 (631)
Q Consensus 155 ~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~A 233 (631)
++..++.++.++.+++.||++..+|.. ....+..+.+++.+ .|.+
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~-------~~~~i~~lL~~l~~~~g~t--------------------------- 207 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVS-------VQAQVLNLMMDLQQELGLS--------------------------- 207 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHH-------HHHHHHHHHHHHHHHcCCE---------------------------
Confidence 999999999999999999999999973 22233333333322 2332
Q ss_pred eEEEeCCCCCCCCCCCceeeeccCCcccHHHHHHHhcccccc
Q 006782 234 HIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTE 275 (631)
Q Consensus 234 DiII~N~~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~ 275 (631)
=++|.++.+....+++.+++|..++.+..+...+++.++...
T Consensus 208 il~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p~hp 249 (327)
T PRK11308 208 YVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHP 249 (327)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCCCCH
Confidence 455555655555678888889888888777777777655433
No 77
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.66 E-value=1e-16 Score=162.33 Aligned_cols=135 Identities=21% Similarity=0.194 Sum_probs=106.2
Q ss_pred eEeecC-ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------cccccc
Q 006782 43 LSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDG 110 (631)
Q Consensus 43 ls~~~g-~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~ 110 (631)
+++.++ ...+++++||.+.+|+ +++|+||||||||||+++|+|++ |..|.|.++|.... .+.+++
T Consensus 7 l~~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 83 (243)
T TIGR02315 7 LSKVYPNGKQALKNINLNINPGE---FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGM 83 (243)
T ss_pred eeeecCCCcceeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEE
Confidence 334444 4679999999999999 99999999999999999999999 89999999996432 235789
Q ss_pred ccCCCCCCchhhHHHHHHHhhc-------------cc----c-------ccc-cccccccccccCceeeeecCccEEEEe
Q 006782 111 NFDDPRLTDYDTLLENIRGLKE-------------GK----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~-------------g~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvE 165 (631)
+||++.+++..++.+++..... .. . +.. ...+......++|+.+++..+++++.+
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 163 (243)
T TIGR02315 84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQ 163 (243)
T ss_pred EcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999998888899999853110 00 0 001 112333456788899999999999999
Q ss_pred echhccccccCCCcE
Q 006782 166 GIYALSEKLRPLIDL 180 (631)
Q Consensus 166 Gi~lL~dEl~~~lDl 180 (631)
+.+++.|||+..+|.
T Consensus 164 p~llllDEPt~~LD~ 178 (243)
T TIGR02315 164 PDLILADEPIASLDP 178 (243)
T ss_pred CCEEEEeCCcccCCH
Confidence 999999999999997
No 78
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=7.2e-17 Score=160.07 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=108.1
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---ccccccccCCCCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDPRL 117 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---~~~i~~vfq~p~l 117 (631)
++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+|++ |..|.|.++|.... .+.+++++|++.+
T Consensus 5 ~l~~~~~~~~~l~~v~~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~ 81 (210)
T cd03269 5 NVTKRFGRVTALDDISFSVEKGE---IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGL 81 (210)
T ss_pred EEEEEECCEEEEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcC
Confidence 34444455679999999999999 89999999999999999999998 89999999997542 2468899999999
Q ss_pred CchhhHHHHHHHhhc--cc-------c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 TDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~--g~-------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++..++.+++..... +. . ... +..+...+..++|+.+++..++.++.++.+++.|||+..+|.
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~ 161 (210)
T cd03269 82 YPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP 161 (210)
T ss_pred CcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 888899999865321 10 0 001 112233356778899999999999999999999999999997
No 79
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.66 E-value=9.9e-17 Score=168.58 Aligned_cols=137 Identities=18% Similarity=0.144 Sum_probs=110.5
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFD 113 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq 113 (631)
+++++.++...+|+++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|++|
T Consensus 6 ~~l~~~~~~~~~l~~is~~i~~Ge---i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q 82 (301)
T TIGR03522 6 SSLTKLYGTQNALDEVSFEAQKGR---IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPE 82 (301)
T ss_pred EEEEEEECCEEEEEEeEEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecC
Confidence 344455566779999999999999 99999999999999999999998 89999999997542 145899999
Q ss_pred CCCCCchhhHHHHHHHhhc--cc-------cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 114 DPRLTDYDTLLENIRGLKE--GK-------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--g~-------~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
++.+++..++.+++..... +. .+ .. +..+......++|+.+++..++.++-++.+++.|||+.
T Consensus 83 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 83 HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999988899999874321 10 00 11 12233445678889999999999999999999999999
Q ss_pred CCcE
Q 006782 177 LIDL 180 (631)
Q Consensus 177 ~lDl 180 (631)
.+|.
T Consensus 163 gLD~ 166 (301)
T TIGR03522 163 GLDP 166 (301)
T ss_pred cCCH
Confidence 9997
No 80
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=1.3e-16 Score=154.25 Aligned_cols=116 Identities=22% Similarity=0.276 Sum_probs=100.8
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccCCC
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDP 115 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq~p 115 (631)
+++.++...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.++|.... .+.++++||++
T Consensus 6 l~~~~~~~~~l~~~~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (173)
T cd03230 6 LSKRYGKKTALDDISLTVEKGE---IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEP 82 (173)
T ss_pred EEEEECCeeeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCC
Confidence 3344444579999999999999 89999999999999999999998 89999999997432 24578999999
Q ss_pred CCCchhhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 116 RLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.+++..++.+++. .++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 83 ~~~~~~tv~~~~~-------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 128 (173)
T cd03230 83 SLYENLTVRENLK-------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDP 128 (173)
T ss_pred ccccCCcHHHHhh-------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 9888889999874 567788899999999999999999999999997
No 81
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.66 E-value=8e-17 Score=163.87 Aligned_cols=136 Identities=19% Similarity=0.178 Sum_probs=107.2
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---------------c
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------------S 105 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---------------~ 105 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|.+ |+.|.|.++|.... .
T Consensus 8 ~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK11264 8 NLVKKFHGQTVLHGIDLEVKPGE---VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLR 84 (250)
T ss_pred ceEEEECCeeeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhh
Confidence 34444555679999999999999 89999999999999999999998 89999999986421 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhh---ccc-------cc-------ccc-ccccccccccCceeeeecCccEEEEeec
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLK---EGK-------AV-------QVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~---~g~-------~I-------~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi 167 (631)
+.+++++|++.+++..++.+++.... .+. .+ ... ..+...+..++|+.+++..+++++.++.
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~ 164 (250)
T PRK11264 85 QHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPE 164 (250)
T ss_pred hhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCC
Confidence 35789999999888889999986421 110 00 111 1233345678889999999999999999
Q ss_pred hhccccccCCCcE
Q 006782 168 YALSEKLRPLIDL 180 (631)
Q Consensus 168 ~lL~dEl~~~lDl 180 (631)
+++.|||+..+|.
T Consensus 165 lllLDEPt~~LD~ 177 (250)
T PRK11264 165 VILFDEPTSALDP 177 (250)
T ss_pred EEEEeCCCccCCH
Confidence 9999999999997
No 82
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.3e-16 Score=166.94 Aligned_cols=211 Identities=17% Similarity=0.262 Sum_probs=159.0
Q ss_pred eeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC------CceEEEECCcccc----
Q 006782 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS---- 104 (631)
Q Consensus 35 ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp------~~G~I~lDg~~~~---- 104 (631)
++.++...|....|...++++|||.+.+|+ ++||+|.|||||||+++.|.+++| ..|.|.++|.+..
T Consensus 3 ~v~nL~v~f~~~~g~v~av~~vs~~i~~GE---~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGE---ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred eEeeeEEEEecCCccEEEEeceeEEEcCCc---EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 455666666556677889999999999999 999999999999999999999994 3578999997321
Q ss_pred -------ccccccccCCCC--CCchhhHHHHHHHhhc--c----------------cccccc----ccccccccccCcee
Q 006782 105 -------SRIIDGNFDDPR--LTDYDTLLENIRGLKE--G----------------KAVQVP----IYDFKSSSRIGYRT 153 (631)
Q Consensus 105 -------~~~i~~vfq~p~--l~d~~tl~e~L~~L~~--g----------------~~I~~P----vyd~~~~~rs~~~~ 153 (631)
.+.++++||+|. +.+..++.+.+..... . +.+.+| +++...|+.+||+.
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 246899999984 4566666666543221 0 112223 56777789999999
Q ss_pred eeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCC
Q 006782 154 LEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTA 233 (631)
Q Consensus 154 ~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~A 233 (631)
+++-.+-++..++.+++.||++..||.. ....+-.+.+++.+ ....|
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt-------~QaqIl~Ll~~l~~--------------------------e~~~a 206 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVT-------VQAQILDLLKELQR--------------------------EKGTA 206 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHH-------HHHHHHHHHHHHHH--------------------------hcCCE
Confidence 9999999999999999999999999974 11112222222221 01345
Q ss_pred eEEEeCCCCCCCCCCCceeeeccCCcccHHHHHHHhccccccccccee
Q 006782 234 HIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETY 281 (631)
Q Consensus 234 DiII~N~~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~~~f~ 281 (631)
=+.|.+|......++++|+||.+|..++.+.+.++|.++....|+..+
T Consensus 207 iilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll 254 (316)
T COG0444 207 LILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRGLL 254 (316)
T ss_pred EEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHHHHH
Confidence 677888888888999999999999999999999999988776665544
No 83
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.65 E-value=1.1e-16 Score=163.84 Aligned_cols=136 Identities=20% Similarity=0.180 Sum_probs=107.2
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------------
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------------- 104 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---------------- 104 (631)
.+++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|.+ |+.|.|.++|....
T Consensus 10 ~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 86 (257)
T PRK10619 10 DLHKRYGEHEVLKGVSLQANAGD---VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQ 86 (257)
T ss_pred eeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchH
Confidence 33344455679999999999999 99999999999999999999998 89999999996431
Q ss_pred ----ccccccccCCCCCCchhhHHHHHHHhh----ccc-------------ccccccc--ccccccccCceeeeecCccE
Q 006782 105 ----SRIIDGNFDDPRLTDYDTLLENIRGLK----EGK-------------AVQVPIY--DFKSSSRIGYRTLEVPSSRI 161 (631)
Q Consensus 105 ----~~~i~~vfq~p~l~d~~tl~e~L~~L~----~g~-------------~I~~Pvy--d~~~~~rs~~~~~~v~~a~V 161 (631)
.+.++|++|++.+++..++.+++.... ... ....... +...+..++|+.+++..+++
T Consensus 87 ~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~lara 166 (257)
T PRK10619 87 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARA 166 (257)
T ss_pred HHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 135899999999998889999985311 100 0111111 33345677889999999999
Q ss_pred EEEeechhccccccCCCcE
Q 006782 162 VIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 162 LIvEGi~lL~dEl~~~lDl 180 (631)
++.++.+++.|||+..+|.
T Consensus 167 l~~~p~llllDEPt~~LD~ 185 (257)
T PRK10619 167 LAMEPEVLLFDEPTSALDP 185 (257)
T ss_pred HhcCCCEEEEeCCcccCCH
Confidence 9999999999999999997
No 84
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=1.1e-16 Score=162.41 Aligned_cols=135 Identities=20% Similarity=0.148 Sum_probs=107.4
Q ss_pred eEeecCc-eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccC
Q 006782 43 LSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFD 113 (631)
Q Consensus 43 ls~~~g~-~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq 113 (631)
+++.++. ..+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... ...++|++|
T Consensus 6 l~~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (242)
T cd03295 6 VTKRYGGGKKAVNNLNLEIAKGE---FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQ 82 (242)
T ss_pred EEEEeCCcceEeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEcc
Confidence 3444444 568999999999999 89999999999999999999998 89999999997432 135789999
Q ss_pred CCCCCchhhHHHHHHHhhc--cc--------------ccccc---ccccccccccCceeeeecCccEEEEeechhccccc
Q 006782 114 DPRLTDYDTLLENIRGLKE--GK--------------AVQVP---IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--g~--------------~I~~P---vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl 174 (631)
++.+++..++.+++..... +. .+..+ ..+......++|+.+++..+++++.++.+++.|||
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 162 (242)
T cd03295 83 QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP 162 (242)
T ss_pred CccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 9999988899999864311 10 01112 22333456778899999999999999999999999
Q ss_pred cCCCcE
Q 006782 175 RPLIDL 180 (631)
Q Consensus 175 ~~~lDl 180 (631)
+..+|.
T Consensus 163 t~~LD~ 168 (242)
T cd03295 163 FGALDP 168 (242)
T ss_pred cccCCH
Confidence 999997
No 85
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.65 E-value=1.3e-16 Score=158.10 Aligned_cols=136 Identities=21% Similarity=0.186 Sum_probs=108.2
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDP 115 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~p 115 (631)
++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+|++ |..|.|.++|.... .+.+++++|++
T Consensus 5 ~l~~~~~~~~~l~~~~~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 81 (208)
T cd03268 5 DLTKTYGKKRVLDDISLHVKKGE---IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAP 81 (208)
T ss_pred EEEEEECCeEeEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCC
Confidence 34444455679999999999999 99999999999999999999998 89999999997532 24588999999
Q ss_pred CCCchhhHHHHHHHhhc--cc---cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 116 RLTDYDTLLENIRGLKE--GK---AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~--g~---~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.+++..++.+++..... +. .+ .. ...+...+..++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 82 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 82 GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 98888899999865321 10 00 01 112333456778899999999999999999999999999998
No 86
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=1.6e-16 Score=160.45 Aligned_cols=135 Identities=21% Similarity=0.236 Sum_probs=106.5
Q ss_pred eEeecCc-eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------cccccc
Q 006782 43 LSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDG 110 (631)
Q Consensus 43 ls~~~g~-~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~ 110 (631)
+++.++. ..+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.+++
T Consensus 6 l~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 82 (241)
T cd03256 6 LSKTYPNGKKALKDVSLSINPGE---FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGM 82 (241)
T ss_pred EEEecCCccEEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEE
Confidence 3344444 679999999999999 99999999999999999999998 89999999986432 135789
Q ss_pred ccCCCCCCchhhHHHHHHHhhc----------c---c----c-------ccc-cccccccccccCceeeeecCccEEEEe
Q 006782 111 NFDDPRLTDYDTLLENIRGLKE----------G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~----------g---~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvE 165 (631)
++|++.+++..++.+++..... + . . ... +..+...+..++|+.+++..+++++.+
T Consensus 83 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 162 (241)
T cd03256 83 IFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQ 162 (241)
T ss_pred EcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999998888899999863210 0 0 0 001 112333456788899999999999999
Q ss_pred echhccccccCCCcE
Q 006782 166 GIYALSEKLRPLIDL 180 (631)
Q Consensus 166 Gi~lL~dEl~~~lDl 180 (631)
+.+++.|||+..+|.
T Consensus 163 p~llllDEPt~~LD~ 177 (241)
T cd03256 163 PKLILADEPVASLDP 177 (241)
T ss_pred CCEEEEeCccccCCH
Confidence 999999999999997
No 87
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.6e-16 Score=161.78 Aligned_cols=191 Identities=15% Similarity=0.172 Sum_probs=132.4
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc-------ccccc
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------SRIID 109 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~-------~~~i~ 109 (631)
+++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ | ..|.|.++|.... ...++
T Consensus 9 l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 85 (250)
T PRK14247 9 LKVSFGQVEVLDGVNLEIPDNT---ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQ 85 (250)
T ss_pred eEEEECCeeeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEE
Confidence 3444455679999999999999 89999999999999999999998 3 5899999997532 14588
Q ss_pred cccCCCCCCchhhHHHHHHHhhc--c-----c----cc-------cc-----cccccccccccCceeeeecCccEEEEee
Q 006782 110 GNFDDPRLTDYDTLLENIRGLKE--G-----K----AV-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (631)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~--g-----~----~I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIvEG 166 (631)
|+||++.+++..++.+++..... + . .+ .. ...+......++|+.+++..+++++.++
T Consensus 86 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 165 (250)
T PRK14247 86 MVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQP 165 (250)
T ss_pred EEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999988888899999864211 0 0 00 11 1123344567888999999999999999
Q ss_pred chhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCC
Q 006782 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTG 246 (631)
Q Consensus 167 i~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~ 246 (631)
.+++.|||+..+|.. ....+..+.+.+.. | .+=+++.++.+....
T Consensus 166 ~lllLDEP~~~LD~~-------~~~~l~~~l~~~~~-~---------------------------~tiii~sH~~~~~~~ 210 (250)
T PRK14247 166 EVLLADEPTANLDPE-------NTAKIESLFLELKK-D---------------------------MTIVLVTHFPQQAAR 210 (250)
T ss_pred CEEEEcCCCccCCHH-------HHHHHHHHHHHHhc-C---------------------------CEEEEEeCCHHHHHH
Confidence 999999999999973 22222222222211 2 123344444443345
Q ss_pred CCCceeeeccCCcccHHHHHHHhcc
Q 006782 247 FQNPTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 247 ~~n~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
.++.+++|+.++....+...+++..
T Consensus 211 ~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 211 ISDYVAFLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred hcCEEEEEECCeEEEECCHHHHHcC
Confidence 6778888887776554555555443
No 88
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=7.1e-17 Score=166.92 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=110.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------cccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRII 108 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i 108 (631)
..+.+.++...++++++|.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... .+.+
T Consensus 28 ~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 28 EEILKKTGQTVGVNDVSLDVREGE---IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhcCCceEeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 344556677889999999999999 99999999999999999999999 89999999996432 1358
Q ss_pred ccccCCCCCCchhhHHHHHHHhhc--c---c-----------cccc-cccccccccccCceeeeecCccEEEEeechhcc
Q 006782 109 DGNFDDPRLTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (631)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~--g---~-----------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~ 171 (631)
++++|++.+++..++.+++..... + . .+.. +..+...+..++|+.+++..+++++.++.+++.
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 899999999888899999865211 1 0 0111 122334456788899999999999999999999
Q ss_pred ccccCCCcE
Q 006782 172 EKLRPLIDL 180 (631)
Q Consensus 172 dEl~~~lDl 180 (631)
|||+..+|.
T Consensus 185 DEPt~~LD~ 193 (269)
T cd03294 185 DEAFSALDP 193 (269)
T ss_pred cCCCccCCH
Confidence 999999998
No 89
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=1.1e-16 Score=160.06 Aligned_cols=128 Identities=18% Similarity=0.204 Sum_probs=104.9
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--ccccccccCCCCCCchhhHHHH
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRLTDYDTLLEN 126 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--~~~i~~vfq~p~l~d~~tl~e~ 126 (631)
..++++++|.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.+++++|++.+++..++.++
T Consensus 17 ~~il~~vs~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (220)
T cd03293 17 VTALEDISLSVEEGE---FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDN 93 (220)
T ss_pred eEEEeceeEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHH
Confidence 679999999999999 89999999999999999999998 89999999997543 3468999999998888899999
Q ss_pred HHHhhc--cc-------c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 127 IRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 127 L~~L~~--g~-------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+..... +. . ... ...+...+..++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 94 VALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 864321 10 0 001 112333456788899999999999999999999999999998
No 90
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.65 E-value=1.5e-16 Score=164.39 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=107.6
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------cccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDG 110 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~ 110 (631)
++++.++...++++++|.+++|+ +++|+|+||||||||+++|+|++ |+.|.|.++|.... .+.+++
T Consensus 12 ~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 88 (269)
T PRK11831 12 GVSFTRGNRCIFDNISLTVPRGK---ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSM 88 (269)
T ss_pred CeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEE
Confidence 33444456679999999999999 99999999999999999999999 89999999986432 235789
Q ss_pred ccCCCCCCchhhHHHHHHHhhc---c--c-----c-------cccc-ccccccccccCceeeeecCccEEEEeechhccc
Q 006782 111 NFDDPRLTDYDTLLENIRGLKE---G--K-----A-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~---g--~-----~-------I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
+||++.+++..++.+++..... + . . +... ..+...+..++|+.+++..+++++.++.+++.|
T Consensus 89 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 168 (269)
T PRK11831 89 LFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD 168 (269)
T ss_pred EecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999888899999864211 0 0 0 0011 123334567888999999999999999999999
Q ss_pred cccCCCcE
Q 006782 173 KLRPLIDL 180 (631)
Q Consensus 173 El~~~lDl 180 (631)
||+..+|.
T Consensus 169 EPt~~LD~ 176 (269)
T PRK11831 169 EPFVGQDP 176 (269)
T ss_pred CCCccCCH
Confidence 99999997
No 91
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.65 E-value=1.3e-16 Score=158.40 Aligned_cols=130 Identities=23% Similarity=0.243 Sum_probs=104.3
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------ccccccccCCCCC
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPRL 117 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~vfq~p~l 117 (631)
...+++++||.+++|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.++|++|++.+
T Consensus 14 ~~~il~~is~~i~~G~---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (214)
T TIGR02673 14 GVAALHDVSLHIRKGE---FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRL 90 (214)
T ss_pred CceeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhh
Confidence 3568999999999999 99999999999999999999998 89999999987432 1357899999998
Q ss_pred CchhhHHHHHHHhhc--c---c----c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 TDYDTLLENIRGLKE--G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~--g---~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++..++.+++..... + . . ... +..+......++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~ 170 (214)
T TIGR02673 91 LPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170 (214)
T ss_pred ccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCH
Confidence 888899998865311 1 0 0 011 112233356778899999999999999999999999999998
Q ss_pred E
Q 006782 181 R 181 (631)
Q Consensus 181 k 181 (631)
.
T Consensus 171 ~ 171 (214)
T TIGR02673 171 D 171 (214)
T ss_pred H
Confidence 3
No 92
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.65 E-value=1.3e-16 Score=157.75 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=104.2
Q ss_pred EeecCc-eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----ccccccccCCCC-
Q 006782 44 SFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDDPR- 116 (631)
Q Consensus 44 s~~~g~-~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----~~~i~~vfq~p~- 116 (631)
++.++. ..++++++|.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... .+.++|+||++.
T Consensus 6 ~~~~~~~~~~l~~v~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~ 82 (205)
T cd03226 6 SFSYKKGTEILDDLSLDLYAGE---IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDY 82 (205)
T ss_pred EEEeCCcCceeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhh
Confidence 344444 578999999999999 99999999999999999999998 89999999997532 246889999974
Q ss_pred CCchhhHHHHHHHhhc--cc---c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 117 LTDYDTLLENIRGLKE--GK---A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 117 l~d~~tl~e~L~~L~~--g~---~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.+...++.+++..... +. . +.. +..+......++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 83 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 159 (205)
T cd03226 83 QLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred hhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 2345689999865321 10 0 011 112333456788899999999999999999999999999997
No 93
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.65 E-value=1.6e-16 Score=173.42 Aligned_cols=193 Identities=19% Similarity=0.215 Sum_probs=139.6
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------cccccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNF 112 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vf 112 (631)
+++++.++...+|+++||.+++|+ ++||+||||||||||+++|+|++ |..|.|.++|.... .+.+++++
T Consensus 7 ~nls~~y~~~~vL~~vs~~i~~Ge---iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~ 83 (402)
T PRK09536 7 SDLSVEFGDTTVLDGVDLSVREGS---LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVP 83 (402)
T ss_pred eeEEEEECCEEEEEeeEEEECCCC---EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEc
Confidence 445566677889999999999999 99999999999999999999999 89999999997532 24589999
Q ss_pred CCCCCCchhhHHHHHHHhhc------c---c----c-------ccc-cccccccccccCceeeeecCccEEEEeechhcc
Q 006782 113 DDPRLTDYDTLLENIRGLKE------G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~------g---~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~ 171 (631)
|++.++...++.+++..... + . . +.. ...+....+.++|+++++..+++++-++.++++
T Consensus 84 q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLL 163 (402)
T PRK09536 84 QDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLL 163 (402)
T ss_pred cCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99998888899998864221 0 0 0 001 122333456788999999999999999999999
Q ss_pred ccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCce
Q 006782 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPT 251 (631)
Q Consensus 172 dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v 251 (631)
|||+..||+. ....++.+.+++.+.|.+ =+++.++.+.....|+++
T Consensus 164 DEPtsgLD~~-------~~~~l~~lL~~l~~~g~T---------------------------IIivsHdl~~~~~~adri 209 (402)
T PRK09536 164 DEPTASLDIN-------HQVRTLELVRRLVDDGKT---------------------------AVAAIHDLDLAARYCDEL 209 (402)
T ss_pred ECCcccCCHH-------HHHHHHHHHHHHHhcCCE---------------------------EEEEECCHHHHHHhCCEE
Confidence 9999999983 333444555554433433 233334444434556777
Q ss_pred eeeccCCcccHHHHHHHhc
Q 006782 252 YILKSTRPVTVDEIKAVMS 270 (631)
Q Consensus 252 ~iLKs~~~v~~~~Ik~vL~ 270 (631)
++|+.++.+..+...+++.
T Consensus 210 i~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 210 VLLADGRVRAAGPPADVLT 228 (402)
T ss_pred EEEECCEEEEecCHHHHhC
Confidence 7777777665555555554
No 94
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=2.1e-16 Score=158.56 Aligned_cols=195 Identities=16% Similarity=0.188 Sum_probs=142.9
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc--------cccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDGN 111 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~--------~~i~~v 111 (631)
+.++..||...+|++|||.+++|+ +++|+|+||+|||||+++|+|+. +..|.|.++|.+.+. ..++|+
T Consensus 7 ~~l~~~YG~~~~L~gvsl~v~~Ge---iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~V 83 (237)
T COG0410 7 ENLSAGYGKIQALRGVSLEVERGE---IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYV 83 (237)
T ss_pred EeEeecccceeEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeC
Confidence 455667888999999999999999 99999999999999999999999 679999999986543 458899
Q ss_pred cCCCCCCchhhHHHHHHHhh---cccccc----------ccc----cccccccccCceeeeecCccEEEEeechhccccc
Q 006782 112 FDDPRLTDYDTLLENIRGLK---EGKAVQ----------VPI----YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~---~g~~I~----------~Pv----yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl 174 (631)
+|....|+.+|+.|||..-. ..+... .|. .+...+..++++.+.++.+++++-++.++++|||
T Consensus 84 PegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEP 163 (237)
T COG0410 84 PEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEP 163 (237)
T ss_pred cccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999999999997421 110110 122 2333456788899999999999999999999999
Q ss_pred cCCCcEEEEEEcChhhHHHHHHHHHHHHh-CCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceee
Q 006782 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYI 253 (631)
Q Consensus 175 ~~~lDlkIfVdad~d~rLiRRI~RDv~er-G~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~i 253 (631)
...+-++ -+.-+-++.+++++. |.|+--|.+.. +--..+-++.||
T Consensus 164 s~GLaP~-------iv~~I~~~i~~l~~~~g~tIlLVEQn~---------------------------~~Al~iaDr~yv 209 (237)
T COG0410 164 SEGLAPK-------IVEEIFEAIKELRKEGGMTILLVEQNA---------------------------RFALEIADRGYV 209 (237)
T ss_pred ccCcCHH-------HHHHHHHHHHHHHHcCCcEEEEEeccH---------------------------HHHHHhhCEEEE
Confidence 9988764 223344444555433 43432211111 111234567788
Q ss_pred eccCCcccHHHHHHHhccc
Q 006782 254 LKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 254 LKs~~~v~~~~Ik~vL~~~ 272 (631)
|..++.+..+.-.+.+..+
T Consensus 210 le~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 210 LENGRIVLSGTAAELLADP 228 (237)
T ss_pred EeCCEEEEecCHHHHhcCH
Confidence 8888888777776666553
No 95
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.64 E-value=1.1e-16 Score=159.40 Aligned_cols=127 Identities=19% Similarity=0.243 Sum_probs=103.6
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccCCCCCCchhhH
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLTDYDTL 123 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq~p~l~d~~tl 123 (631)
.++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.++++||++.+++..++
T Consensus 19 ~il~~~sl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGE---VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 79999999999999 89999999999999999999998 89999999987532 2458899999998888899
Q ss_pred HHHHHHhhc--cc---c-----------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 124 LENIRGLKE--GK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 124 ~e~L~~L~~--g~---~-----------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.+++..... +. . +.. ...+...+..++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 96 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 169 (218)
T cd03266 96 RENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV 169 (218)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCH
Confidence 999864321 10 0 011 112333456778899999999999999999999999999997
No 96
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.64 E-value=1.7e-16 Score=157.63 Aligned_cols=136 Identities=21% Similarity=0.194 Sum_probs=107.4
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDP 115 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~p 115 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++
T Consensus 5 ~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~ 81 (213)
T cd03301 5 NVTKRFGNVTALDDLNLDIADGE---FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNY 81 (213)
T ss_pred eeEEEECCeeeeeceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecCh
Confidence 34444555679999999999999 89999999999999999999998 89999999997532 23588999999
Q ss_pred CCCchhhHHHHHHHhhc--c---c----c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCC
Q 006782 116 RLTDYDTLLENIRGLKE--G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~--g---~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
.+++..++.+++..... + . . ... ...+......++|+.+++..++.++.++.+++.|||+..+
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~L 161 (213)
T cd03301 82 ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL 161 (213)
T ss_pred hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 88888899998864311 1 0 0 001 1123333567788999999999999999999999999999
Q ss_pred cE
Q 006782 179 DL 180 (631)
Q Consensus 179 Dl 180 (631)
|.
T Consensus 162 D~ 163 (213)
T cd03301 162 DA 163 (213)
T ss_pred CH
Confidence 97
No 97
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=2.1e-16 Score=169.73 Aligned_cols=198 Identities=16% Similarity=0.169 Sum_probs=139.2
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------cccccc
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDG 110 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~ 110 (631)
+++.++.+. + ++||.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... .+.++|
T Consensus 6 l~k~~~~~~-~-~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (352)
T PRK11144 6 FKQQLGDLC-L-TVNLTLPAQG---ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGY 80 (352)
T ss_pred EEEEeCCEE-E-EEEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEE
Confidence 334444443 3 8999999999 99999999999999999999999 89999999986421 246889
Q ss_pred ccCCCCCCchhhHHHHHHHhhccc---c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 111 NFDDPRLTDYDTLLENIRGLKEGK---A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~g~---~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
+||++.+|+..++.+++....... . +.. +..+...+..++|+.+++..++.++.++.+++.|||+..+|
T Consensus 81 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD 160 (352)
T PRK11144 81 VFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160 (352)
T ss_pred EcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 999999999999999987432110 0 111 22344556788899999999999999999999999999999
Q ss_pred EEEEEEcChhhHHHHHHHHHHHHh-CCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCC
Q 006782 180 LRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTR 258 (631)
Q Consensus 180 lkIfVdad~d~rLiRRI~RDv~er-G~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~ 258 (631)
.. ..+.++.+.+++... |.+ =+++.++.+.....++.+++|+.++
T Consensus 161 ~~-------~~~~l~~~L~~l~~~~g~t---------------------------ii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 161 LP-------RKRELLPYLERLAREINIP---------------------------ILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred HH-------HHHHHHHHHHHHHHhcCCe---------------------------EEEEecCHHHHHHhCCEEEEEeCCE
Confidence 73 222333333333221 332 2334444433345567777888887
Q ss_pred cccHHHHHHHhcccccccccc
Q 006782 259 PVTVDEIKAVMSKEHTETTEE 279 (631)
Q Consensus 259 ~v~~~~Ik~vL~~~~~~~~~~ 279 (631)
.+..+...+++.++.......
T Consensus 207 i~~~g~~~~i~~~p~~~~~~~ 227 (352)
T PRK11144 207 VKAFGPLEEVWASSAMRPWLP 227 (352)
T ss_pred EEEecCHHHHHhCcchhhhhc
Confidence 776677777777665433333
No 98
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.4e-16 Score=169.50 Aligned_cols=207 Identities=13% Similarity=0.173 Sum_probs=141.2
Q ss_pred eeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C----CceEEEECCccccc----
Q 006782 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDSS---- 105 (631)
Q Consensus 35 ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p----~~G~I~lDg~~~~~---- 105 (631)
++..+...|....+...+|++|||.+.+|+ ++||+|+||||||||+++|++++ | +.|.|.++|.+...
T Consensus 5 ~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 5 NVDKLSVHFGDESAPFRAVDRISYSVKQGE---VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred EEeCeEEEECCCCccEEEEeeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 444444444222222579999999999999 99999999999999999999998 3 68999999975321
Q ss_pred -------cccccccCCCC--CCchhhHHHHHHHhhc---c--------------cccccc----ccccccccccCceeee
Q 006782 106 -------RIIDGNFDDPR--LTDYDTLLENIRGLKE---G--------------KAVQVP----IYDFKSSSRIGYRTLE 155 (631)
Q Consensus 106 -------~~i~~vfq~p~--l~d~~tl~e~L~~L~~---g--------------~~I~~P----vyd~~~~~rs~~~~~~ 155 (631)
+.++++||++. +++..++.+++..... + +.+.++ ..+...++.++|+.++
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 25899999984 5665666555432110 0 011121 2344567889999999
Q ss_pred ecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCe
Q 006782 156 VPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAH 234 (631)
Q Consensus 156 v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~AD 234 (631)
+..++.++.++.+++.||++..+|.. ....+..+.+++.+ .|.+ =
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~-------~~~~il~lL~~l~~~~g~t---------------------------i 207 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVT-------IQAQIIELLLELQQKENMA---------------------------L 207 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHH-------HHHHHHHHHHHHHHhcCCE---------------------------E
Confidence 99999999999999999999999973 22223333333322 2333 3
Q ss_pred EEEeCCCCCCCCCCCceeeeccCCcccHHHHHHHhccccccccc
Q 006782 235 IKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTE 278 (631)
Q Consensus 235 iII~N~~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~~ 278 (631)
++|.++.+....+++.+++|+.++.+..+...+++.++....++
T Consensus 208 l~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 208 VLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQ 251 (326)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCChHHH
Confidence 44455554445667888888888888777777777665443333
No 99
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.64 E-value=2.6e-16 Score=156.09 Aligned_cols=154 Identities=23% Similarity=0.259 Sum_probs=115.2
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---------ccccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDGN 111 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---------~~~i~~v 111 (631)
++++.++...+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|+
T Consensus 5 ~l~~~~~~~~~l~~~s~~i~~G~---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (213)
T cd03262 5 NLHKSFGDFHVLKGIDLTVKKGE---VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMV 81 (213)
T ss_pred EEEEEECCeEeecCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEE
Confidence 34445555679999999999999 99999999999999999999999 89999999987431 1458899
Q ss_pred cCCCCCCchhhHHHHHHHhh---ccc---c-----------ccc-cccccccccccCceeeeecCccEEEEeechhcccc
Q 006782 112 FDDPRLTDYDTLLENIRGLK---EGK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~---~g~---~-----------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dE 173 (631)
+|++.+++..++.+++.... .+. . ... +..+...+..++|+.+++..+++++.++.+++.||
T Consensus 82 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 161 (213)
T cd03262 82 FQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE 161 (213)
T ss_pred ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999888889999886421 110 0 001 11233345677889999999999999999999999
Q ss_pred ccCCCcEEEEEEcChhhHHHHHHHHHHHHhCC
Q 006782 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (631)
Q Consensus 174 l~~~lDlkIfVdad~d~rLiRRI~RDv~erG~ 205 (631)
|+..+|.. ..+.+..+.+++.+.|.
T Consensus 162 P~~~LD~~-------~~~~l~~~l~~~~~~~~ 186 (213)
T cd03262 162 PTSALDPE-------LVGEVLDVMKDLAEEGM 186 (213)
T ss_pred CccCCCHH-------HHHHHHHHHHHHHHcCC
Confidence 99999972 33344444555443343
No 100
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.7e-16 Score=161.20 Aligned_cols=136 Identities=19% Similarity=0.236 Sum_probs=106.5
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFD 113 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq 113 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++++||
T Consensus 8 ~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q 84 (241)
T PRK14250 8 EVSYSSFGKEILKDISVKFEGGA---IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQ 84 (241)
T ss_pred eEEEEeCCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEec
Confidence 34444555679999999999999 89999999999999999999998 89999999996432 245789999
Q ss_pred CCCCCchhhHHHHHHHhh--ccc----------ccccc--ccccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 114 DPRLTDYDTLLENIRGLK--EGK----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~--~g~----------~I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
++.+++ .++.+++.... .+. ....+ ..+......++|+.+++..+++++.++.+++.|||+..+|
T Consensus 85 ~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 163 (241)
T PRK14250 85 QPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALD 163 (241)
T ss_pred Cchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 998886 58888876321 110 01111 1233345678889999999999999999999999999999
Q ss_pred EE
Q 006782 180 LR 181 (631)
Q Consensus 180 lk 181 (631)
..
T Consensus 164 ~~ 165 (241)
T PRK14250 164 PT 165 (241)
T ss_pred HH
Confidence 73
No 101
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=1.9e-16 Score=153.74 Aligned_cols=118 Identities=25% Similarity=0.255 Sum_probs=100.8
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---------cccccccc
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDGNF 112 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---------~~~i~~vf 112 (631)
+++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |+.|.|.++|.... .+.+++++
T Consensus 6 l~~~~~~~~~l~~i~~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~ 82 (178)
T cd03229 6 VSKRYGQKTVLNDVSLNIEAGE---IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVF 82 (178)
T ss_pred EEEEECCeEEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEe
Confidence 3444455679999999999999 99999999999999999999998 78999999996432 14578999
Q ss_pred CCCCCCchhhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
|++.+++..++.+++... .++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 83 q~~~~~~~~t~~~~l~~~-----------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~ 133 (178)
T cd03229 83 QDFALFPHLTVLENIALG-----------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP 133 (178)
T ss_pred cCCccCCCCCHHHheeec-----------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH
Confidence 999988878898886432 567788889999999999999999999999997
No 102
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=2.4e-16 Score=159.82 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=108.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------------cc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------SR 106 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------------~~ 106 (631)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|+|.+ |+.|.|.++|.... .+
T Consensus 6 ~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (242)
T PRK11124 6 NGINCFYGAHQALFDITLDCPQGE---TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRR 82 (242)
T ss_pred EeeEEEECCeeeEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHh
Confidence 344455555679999999999999 89999999999999999999998 89999999987431 13
Q ss_pred ccccccCCCCCCchhhHHHHHHHh-h--ccc--------------cccc-cccccccccccCceeeeecCccEEEEeech
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGL-K--EGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L-~--~g~--------------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~ 168 (631)
.++|++|++.+++..++.+++... . .+. .... ...+......++|+.+++..++.++.++.+
T Consensus 83 ~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l 162 (242)
T PRK11124 83 NVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred heEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 578999999999888999998531 1 010 0111 122333456778899999999999999999
Q ss_pred hccccccCCCcE
Q 006782 169 ALSEKLRPLIDL 180 (631)
Q Consensus 169 lL~dEl~~~lDl 180 (631)
++.|||+..+|.
T Consensus 163 lilDEPt~~LD~ 174 (242)
T PRK11124 163 LLFDEPTAALDP 174 (242)
T ss_pred EEEcCCCCcCCH
Confidence 999999999997
No 103
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.64 E-value=1.9e-16 Score=157.90 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=104.4
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccCCCCCCchhh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLTDYDT 122 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq~p~l~d~~t 122 (631)
..+++++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.+++++|++.+++..+
T Consensus 15 ~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGE---IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 679999999999999 99999999999999999999998 89999999997532 245889999999888889
Q ss_pred HHHHHHHhhc--cc---c-----------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 123 LLENIRGLKE--GK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 123 l~e~L~~L~~--g~---~-----------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+.+++..... +. . ... +..+...+..++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~ 166 (220)
T cd03263 92 VREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDP 166 (220)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCH
Confidence 9998865321 10 0 011 112333456778899999999999999999999999999997
No 104
>PRK10908 cell division protein FtsE; Provisional
Probab=99.64 E-value=2.5e-16 Score=157.63 Aligned_cols=130 Identities=19% Similarity=0.148 Sum_probs=104.3
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------ccccccccCCCC
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPR 116 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~vfq~p~ 116 (631)
+...+++++||.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.++|.... .+.++|++|++.
T Consensus 13 ~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~ 89 (222)
T PRK10908 13 GGRQALQGVTFHMRPGE---MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHH 89 (222)
T ss_pred CCCeEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcc
Confidence 34578999999999999 89999999999999999999999 89999999986432 235789999998
Q ss_pred CCchhhHHHHHHHhhc--cc---c----c-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 117 LTDYDTLLENIRGLKE--GK---A----V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 117 l~d~~tl~e~L~~L~~--g~---~----I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
+++..++.+++..... +. . + .. +..+...+..++|+.+++..+++++.++.+++.|||+..+|
T Consensus 90 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 169 (222)
T PRK10908 90 LLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169 (222)
T ss_pred ccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCC
Confidence 8888899998865311 10 0 0 01 11233345677889999999999999999999999999999
Q ss_pred E
Q 006782 180 L 180 (631)
Q Consensus 180 l 180 (631)
.
T Consensus 170 ~ 170 (222)
T PRK10908 170 D 170 (222)
T ss_pred H
Confidence 7
No 105
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=2.4e-16 Score=164.66 Aligned_cols=184 Identities=13% Similarity=0.176 Sum_probs=129.2
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---------ccccccccCCCC-CC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDGNFDDPR-LT 118 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---------~~~i~~vfq~p~-l~ 118 (631)
..+|++|||.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.++|+||+|. .+
T Consensus 20 ~~~l~~vs~~i~~Ge---~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGE---FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 469999999999999 89999999999999999999999 89999999997542 135799999984 23
Q ss_pred chhhHHHHHHHhhc--c--------------cccccc---ccccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 119 DYDTLLENIRGLKE--G--------------KAVQVP---IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 119 d~~tl~e~L~~L~~--g--------------~~I~~P---vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
...++.+++..... + +.+..+ ..+...+..++|+.+++..+++++.++.+++.|||+..+|
T Consensus 97 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD 176 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176 (287)
T ss_pred ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCC
Confidence 34688888864211 1 011121 2344456788899999999999999999999999999999
Q ss_pred EEEEEEcChhhHHHHHHHHHHHHh-CCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCC
Q 006782 180 LRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTR 258 (631)
Q Consensus 180 lkIfVdad~d~rLiRRI~RDv~er-G~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~ 258 (631)
.. ..+.+..+.+++.+. |.++--+.| +.+.....|+.+++|+.+.
T Consensus 177 ~~-------~~~~l~~~l~~l~~~~g~tvi~vtH---------------------------d~~~~~~~~drv~~l~~G~ 222 (287)
T PRK13637 177 PK-------GRDEILNKIKELHKEYNMTIILVSH---------------------------SMEDVAKLADRIIVMNKGK 222 (287)
T ss_pred HH-------HHHHHHHHHHHHHHhcCCEEEEEeC---------------------------CHHHHHHhCCEEEEEECCE
Confidence 83 334444555554432 444333333 2222223466667777766
Q ss_pred cccHHHHHHHhc
Q 006782 259 PVTVDEIKAVMS 270 (631)
Q Consensus 259 ~v~~~~Ik~vL~ 270 (631)
.+..+...+++.
T Consensus 223 i~~~g~~~~~~~ 234 (287)
T PRK13637 223 CELQGTPREVFK 234 (287)
T ss_pred EEEECCHHHHHh
Confidence 555555555544
No 106
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=3.4e-16 Score=158.59 Aligned_cols=136 Identities=19% Similarity=0.190 Sum_probs=107.5
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------cccccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNF 112 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vf 112 (631)
++++.++...++++++|.+++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.+++++
T Consensus 8 ~l~~~~~~~~~l~~~sl~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 84 (241)
T PRK10895 8 NLAKAYKGRRVVEDVSLTVNSGE---IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLP 84 (241)
T ss_pred CcEEEeCCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEec
Confidence 44444555679999999999999 89999999999999999999998 89999999996432 24588999
Q ss_pred CCCCCCchhhHHHHHHHhhc--c----cc----c-------ccc-ccccccccccCceeeeecCccEEEEeechhccccc
Q 006782 113 DDPRLTDYDTLLENIRGLKE--G----KA----V-------QVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~--g----~~----I-------~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl 174 (631)
|++.+++..++.+++..... + .. + ... ..+...+..++|+.+++..++.++.++.+++.|||
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (241)
T PRK10895 85 QEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEP 164 (241)
T ss_pred cCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99998888899999865321 0 00 0 010 11222345778899999999999999999999999
Q ss_pred cCCCcE
Q 006782 175 RPLIDL 180 (631)
Q Consensus 175 ~~~lDl 180 (631)
+..+|.
T Consensus 165 t~~LD~ 170 (241)
T PRK10895 165 FAGVDP 170 (241)
T ss_pred cccCCH
Confidence 999997
No 107
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.9e-16 Score=165.21 Aligned_cols=183 Identities=14% Similarity=0.205 Sum_probs=128.4
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------ccccccccCCCC-
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPR- 116 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~vfq~p~- 116 (631)
..+|++|+|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.+||.... .+.++++||+|.
T Consensus 20 ~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGK---YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 468999999999999 89999999999999999999999 89999999997532 235899999873
Q ss_pred -CCchhhHHHHHHHhhc--cc--------------cccc--cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 117 -LTDYDTLLENIRGLKE--GK--------------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 117 -l~d~~tl~e~L~~L~~--g~--------------~I~~--Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
++. .++.+++..... +. .+.+ +..+......++|+.+++..+++++.++.+++.|||+..
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~ 175 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 444 588998864221 10 0111 122334556788899999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
+|.. ..+.+..+.+++.+ .|.++--+.| +.+.....++++++|+.
T Consensus 176 LD~~-------~~~~l~~~l~~l~~~~g~tvl~vtH---------------------------~~~~~~~~~dri~~l~~ 221 (286)
T PRK13646 176 LDPQ-------SKRQVMRLLKSLQTDENKTIILVSH---------------------------DMNEVARYADEVIVMKE 221 (286)
T ss_pred CCHH-------HHHHHHHHHHHHHHhCCCEEEEEec---------------------------CHHHHHHhCCEEEEEEC
Confidence 9983 34445555555543 3544333333 32222234566666766
Q ss_pred CCcccHHHHHHHhc
Q 006782 257 TRPVTVDEIKAVMS 270 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~ 270 (631)
+..+..+...+++.
T Consensus 222 G~i~~~g~~~~~~~ 235 (286)
T PRK13646 222 GSIVSQTSPKELFK 235 (286)
T ss_pred CEEEEECCHHHHHh
Confidence 66555455555554
No 108
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.63 E-value=2.8e-16 Score=155.83 Aligned_cols=136 Identities=19% Similarity=0.194 Sum_probs=104.5
Q ss_pred eEeecCc--eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------cccccccc
Q 006782 43 LSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNF 112 (631)
Q Consensus 43 ls~~~g~--~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vf 112 (631)
+++.++. ..++++++|.+++|+ ++||+||||||||||+++|+|.+ |+.|.|.++|.... .+.++|++
T Consensus 5 l~~~~~~~~~~il~~vs~~i~~G~---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (211)
T cd03225 5 LSFSYPDGARPALDDISLTIKKGE---FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVF 81 (211)
T ss_pred EEEecCCCCeeeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEe
Confidence 3344444 679999999999999 99999999999999999999998 89999999986432 14578999
Q ss_pred CCCCC-CchhhHHHHHHHhhc--cc---c-----------ccc-cccccccccccCceeeeecCccEEEEeechhccccc
Q 006782 113 DDPRL-TDYDTLLENIRGLKE--GK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (631)
Q Consensus 113 q~p~l-~d~~tl~e~L~~L~~--g~---~-----------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl 174 (631)
|++.. ++..++.+++..... +. . ... ...+...+..++|+.+++..+++++.++.+++.|||
T Consensus 82 q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 161 (211)
T cd03225 82 QNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEP 161 (211)
T ss_pred cChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99753 555788888754211 00 0 011 112333456788899999999999999999999999
Q ss_pred cCCCcEE
Q 006782 175 RPLIDLR 181 (631)
Q Consensus 175 ~~~lDlk 181 (631)
++.+|..
T Consensus 162 t~~LD~~ 168 (211)
T cd03225 162 TAGLDPA 168 (211)
T ss_pred cccCCHH
Confidence 9999973
No 109
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.63 E-value=2.7e-16 Score=159.99 Aligned_cols=135 Identities=18% Similarity=0.175 Sum_probs=106.8
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CC-----ceEEEECCcccc---------cc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS---------SR 106 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~-----~G~I~lDg~~~~---------~~ 106 (631)
++++.++...++++++|.+++|+ ++||+|+||||||||+++|+|++ |. .|.|.++|.... .+
T Consensus 6 ~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 82 (247)
T TIGR00972 6 NLNLFYGEKEALKNINLDIPKNQ---VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRR 82 (247)
T ss_pred EEEEEECCeeeecceeEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHh
Confidence 33444455679999999999999 99999999999999999999999 77 999999997532 13
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc--c----c----c-------ccc-----cccccccccccCceeeeecCccEEEE
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE--G----K----A-------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--g----~----~-------I~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
.++|+||++.+++ .++.+++..... + . . +.. ...+...+..++|+.+++..++.++.
T Consensus 83 ~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 161 (247)
T TIGR00972 83 RVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAV 161 (247)
T ss_pred heEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 5889999999888 899998864211 1 0 0 011 12233345678889999999999999
Q ss_pred eechhccccccCCCcE
Q 006782 165 EGIYALSEKLRPLIDL 180 (631)
Q Consensus 165 EGi~lL~dEl~~~lDl 180 (631)
++.+++.|||+..+|.
T Consensus 162 ~p~llllDEPt~~LD~ 177 (247)
T TIGR00972 162 EPEVLLLDEPTSALDP 177 (247)
T ss_pred CCCEEEEeCCcccCCH
Confidence 9999999999999997
No 110
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.2e-16 Score=168.23 Aligned_cols=203 Identities=10% Similarity=0.168 Sum_probs=141.0
Q ss_pred eeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC-----CceEEEECCccccc---
Q 006782 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-----SIAVITMDNYNDSS--- 105 (631)
Q Consensus 34 ~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp-----~~G~I~lDg~~~~~--- 105 (631)
+++..+...|....+...++++|||.+.+|+ ++||+|+||||||||+++|+++++ +.|.|.++|.....
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge---~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGE---IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 3444454444222245679999999999999 999999999999999999999982 68999999975321
Q ss_pred --------cccccccCCCC--CCchhhHHHHHHHhhc-----c-----------------cccccc----cccccccccc
Q 006782 106 --------RIIDGNFDDPR--LTDYDTLLENIRGLKE-----G-----------------KAVQVP----IYDFKSSSRI 149 (631)
Q Consensus 106 --------~~i~~vfq~p~--l~d~~tl~e~L~~L~~-----g-----------------~~I~~P----vyd~~~~~rs 149 (631)
+.++++||++. +++..++.+++..... + +.+.++ ..+...++.+
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 25889999986 4566677777653110 0 001111 1234456788
Q ss_pred CceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccC
Q 006782 150 GYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEP 228 (631)
Q Consensus 150 ~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP 228 (631)
+|+.+++..+++++.++.+++.||++..+|.. ..+.+..+.+++.+ .|.
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~-------~~~~i~~lL~~l~~~~g~----------------------- 210 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPT-------TQAQIFRLLTRLNQNNNT----------------------- 210 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHH-------HHHHHHHHHHHHHHhcCC-----------------------
Confidence 89999999999999999999999999999973 22223333333322 233
Q ss_pred CCCCCeEEEeCCCCCCCCCCCceeeeccCCcccHHHHHHHhcccc
Q 006782 229 DLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEH 273 (631)
Q Consensus 229 ~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~ 273 (631)
+=++|.++......+++.+++|..++.+..+...+++..+.
T Consensus 211 ----tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~p~ 251 (330)
T PRK15093 211 ----TILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPH 251 (330)
T ss_pred ----EEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 24555555555556778888888888777777777766543
No 111
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.63 E-value=5e-16 Score=155.08 Aligned_cols=128 Identities=18% Similarity=0.174 Sum_probs=104.0
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------ccccccccCCCCC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPRL 117 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~vfq~p~l 117 (631)
..++++++|.+++|+ ++||+||||||||||+++|+|.+ |..|.|.++|.... .+.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGE---IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 569999999999999 99999999999999999999998 89999999986432 1358899999988
Q ss_pred CchhhHHHHHHHhhc--c---c----cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 TDYDTLLENIRGLKE--G---K----AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~--g---~----~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++..++.+++..... . . .+ .. +..+...+..++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 174 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDN 174 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCH
Confidence 888899999864211 0 0 00 01 112333456788899999999999999999999999999997
No 112
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.63 E-value=5.7e-16 Score=156.60 Aligned_cols=135 Identities=19% Similarity=0.190 Sum_probs=107.0
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc------cccccccCCC
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNFDDP 115 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~------~~i~~vfq~p 115 (631)
+++.++...+++++||.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|..... +.+++++|++
T Consensus 7 l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~ 83 (236)
T TIGR03864 7 LSFAYGARRALDDVSFTVRPGE---FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQP 83 (236)
T ss_pred eEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCC
Confidence 3344455679999999999999 99999999999999999999998 899999999974321 3578999999
Q ss_pred CCCchhhHHHHHHHhhc--cc-------c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCC
Q 006782 116 RLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~--g~-------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
.++...++.+++..... +. . +.. +..+...+..++|+.+++..+++++.++.+++.|||+..+
T Consensus 84 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~L 163 (236)
T TIGR03864 84 TLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGL 163 (236)
T ss_pred CCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 88777889998864321 10 0 001 1123344567888999999999999999999999999999
Q ss_pred cE
Q 006782 179 DL 180 (631)
Q Consensus 179 Dl 180 (631)
|.
T Consensus 164 D~ 165 (236)
T TIGR03864 164 DP 165 (236)
T ss_pred CH
Confidence 98
No 113
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=3.1e-16 Score=158.53 Aligned_cols=192 Identities=15% Similarity=0.127 Sum_probs=133.5
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~v 111 (631)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|.+ |+.|.|.++|.... .+.++++
T Consensus 9 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (237)
T PRK11614 9 DKVSAHYGKIQALHEVSLHINQGE---IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIV 85 (237)
T ss_pred EeEEEeeCCceeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEe
Confidence 444455555679999999999999 89999999999999999999999 89999999997432 1357899
Q ss_pred cCCCCCCchhhHHHHHHHhhc---ccc----cc-----cc----ccccccccccCceeeeecCccEEEEeechhcccccc
Q 006782 112 FDDPRLTDYDTLLENIRGLKE---GKA----VQ-----VP----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~---g~~----I~-----~P----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~ 175 (631)
+|++.+|+..++.+++..... ... +. .+ ..+...+..++|+.+++..+++++.++.+++.|||+
T Consensus 86 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt 165 (237)
T PRK11614 86 PEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165 (237)
T ss_pred ccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 999999988899998864211 000 00 01 112233457788999999999999999999999999
Q ss_pred CCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeec
Q 006782 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILK 255 (631)
Q Consensus 176 ~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLK 255 (631)
..+|.. ....+..+.+++.+.|.+ =+++.++.+.....++.+++|+
T Consensus 166 ~~LD~~-------~~~~l~~~l~~~~~~~~t---------------------------iii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 166 LGLAPI-------IIQQIFDTIEQLREQGMT---------------------------IFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred ccCCHH-------HHHHHHHHHHHHHHCCCE---------------------------EEEEeCcHHHHHhhCCEEEEEe
Confidence 999973 223333333443333333 2333344333345677777777
Q ss_pred cCCcccHHHHHHHh
Q 006782 256 STRPVTVDEIKAVM 269 (631)
Q Consensus 256 s~~~v~~~~Ik~vL 269 (631)
.+..+..+...+++
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 77665545554444
No 114
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.63 E-value=2.7e-16 Score=158.03 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=107.8
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------cccccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNF 112 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vf 112 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.++|++
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (230)
T TIGR03410 5 NLNVYYGQSHILRGVSLEVPKGE---VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVP 81 (230)
T ss_pred eEEEEeCCeEEecceeeEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEec
Confidence 34455555679999999999999 99999999999999999999999 89999999986432 23578999
Q ss_pred CCCCCCchhhHHHHHHHhhc--ccc---c--------c-c-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 113 DDPRLTDYDTLLENIRGLKE--GKA---V--------Q-V-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~--g~~---I--------~-~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
|++.+++..++.+++..... +.. . . . ...+......++|+.+++..+++++.++.+++.|||+..
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~ 161 (230)
T TIGR03410 82 QGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEG 161 (230)
T ss_pred cCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence 99999988899999864321 110 0 0 0 112333445778899999999999999999999999999
Q ss_pred CcE
Q 006782 178 IDL 180 (631)
Q Consensus 178 lDl 180 (631)
+|.
T Consensus 162 LD~ 164 (230)
T TIGR03410 162 IQP 164 (230)
T ss_pred CCH
Confidence 997
No 115
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2.5e-16 Score=164.54 Aligned_cols=182 Identities=15% Similarity=0.248 Sum_probs=127.5
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------ccccccccCCC--C
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDP--R 116 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~vfq~p--~ 116 (631)
.+|+++||.+++|+ ++||+|+||||||||+++|+|++ |+.|.|.+||.... .+.++++||+| .
T Consensus 20 ~~l~~vsl~i~~Ge---~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGS---YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCC---EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 58999999999999 89999999999999999999999 89999999997532 13578999988 4
Q ss_pred CCchhhHHHHHHHhhc--c---c-----------ccccc--ccccccccccCceeeeecCccEEEEeechhccccccCCC
Q 006782 117 LTDYDTLLENIRGLKE--G---K-----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 117 l~d~~tl~e~L~~L~~--g---~-----------~I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
++. .++.+++..... + . .+... ..+...+..++|+++++..+++++.++.+++.|||+..+
T Consensus 97 l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gL 175 (288)
T PRK13643 97 LFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175 (288)
T ss_pred ccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCC
Confidence 554 588998865321 1 0 01121 224444667888999999999999999999999999999
Q ss_pred cEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCC
Q 006782 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTR 258 (631)
Q Consensus 179 DlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~ 258 (631)
|.. ..+.+..+.+++...|.++- ++.++.+-....++.+++|+.+.
T Consensus 176 D~~-------~~~~l~~~l~~l~~~g~til---------------------------~vtHd~~~~~~~~dri~~l~~G~ 221 (288)
T PRK13643 176 DPK-------ARIEMMQLFESIHQSGQTVV---------------------------LVTHLMDDVADYADYVYLLEKGH 221 (288)
T ss_pred CHH-------HHHHHHHHHHHHHHCCCEEE---------------------------EEecCHHHHHHhCCEEEEEECCE
Confidence 973 22233333344433344432 23333322234566667777776
Q ss_pred cccHHHHHHHhc
Q 006782 259 PVTVDEIKAVMS 270 (631)
Q Consensus 259 ~v~~~~Ik~vL~ 270 (631)
.+..+...+++.
T Consensus 222 i~~~g~~~~~~~ 233 (288)
T PRK13643 222 IISCGTPSDVFQ 233 (288)
T ss_pred EEEECCHHHHHc
Confidence 665555555554
No 116
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.63 E-value=3.5e-16 Score=155.26 Aligned_cols=129 Identities=20% Similarity=0.220 Sum_probs=104.1
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------ccccccccCCCCCC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPRLT 118 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~vfq~p~l~ 118 (631)
..+++++||.+.+|+ ++||+|+||||||||+++|+|.+ |+.|.|.++|.... .+.+++++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGE---FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 568999999999999 89999999999999999999998 89999999987432 13578999999999
Q ss_pred chhhHHHHHHHhhc--cc-------c-------cccc-ccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 119 DYDTLLENIRGLKE--GK-------A-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 119 d~~tl~e~L~~L~~--g~-------~-------I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
+..++.+++..... +. . ...+ ..+...+..++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 91 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 170 (214)
T cd03292 91 PDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPD 170 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHH
Confidence 88899998865321 10 0 0111 123334567788999999999999999999999999999983
No 117
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.63 E-value=2.6e-16 Score=160.57 Aligned_cols=136 Identities=18% Similarity=0.211 Sum_probs=107.2
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------------
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------------- 104 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---------------- 104 (631)
++++.++...++++++|.+++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|....
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~ 81 (252)
T TIGR03005 5 DVTKRFGILTVLDGLNFSVAAGE---KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKH 81 (252)
T ss_pred EEEEEeCCeeEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhH
Confidence 34455555679999999999999 99999999999999999999999 89999999986431
Q ss_pred ----ccccccccCCCCCCchhhHHHHHHHhh---ccc-------c-------ccc-cccccccccccCceeeeecCccEE
Q 006782 105 ----SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIV 162 (631)
Q Consensus 105 ----~~~i~~vfq~p~l~d~~tl~e~L~~L~---~g~-------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VL 162 (631)
.+.++++||++.+++..++.+++.... .+. . +.. +..+......++|+.+++..++.+
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 161 (252)
T TIGR03005 82 LRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARAL 161 (252)
T ss_pred HHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHH
Confidence 235789999999888889999886421 010 0 001 112233355778899999999999
Q ss_pred EEeechhccccccCCCcE
Q 006782 163 IIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 163 IvEGi~lL~dEl~~~lDl 180 (631)
+.++.+++.|||+..+|.
T Consensus 162 ~~~p~llllDEP~~~LD~ 179 (252)
T TIGR03005 162 AMRPKVMLFDEVTSALDP 179 (252)
T ss_pred HcCCCEEEEeCCcccCCH
Confidence 999999999999999997
No 118
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=3.1e-16 Score=163.02 Aligned_cols=148 Identities=12% Similarity=0.119 Sum_probs=112.8
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCC-CCch
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPR-LTDY 120 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~-l~d~ 120 (631)
..+|+++||.+++|+ ++||+|+||||||||+++|+|++ |..|.|.++|..... +.++++||+|. .+..
T Consensus 20 ~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGE---WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 458999999999999 99999999999999999999999 899999999975421 35789999984 6666
Q ss_pred hhHHHHHHHhhccc---------c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEE
Q 006782 121 DTLLENIRGLKEGK---------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (631)
Q Consensus 121 ~tl~e~L~~L~~g~---------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIf 183 (631)
.++.+++....... . +.. ...+...+..++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~-- 174 (279)
T PRK13650 97 ATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE-- 174 (279)
T ss_pred ccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH--
Confidence 79999986432110 0 011 1233444677888999999999999999999999999999983
Q ss_pred EEcChhhHHHHHHHHHHHH-hCCCH
Q 006782 184 VTGGVHFDLVKRVFRDIQR-VGQEP 207 (631)
Q Consensus 184 Vdad~d~rLiRRI~RDv~e-rG~s~ 207 (631)
..+.+..+.+++.. .|.++
T Consensus 175 -----~~~~l~~~l~~l~~~~g~ti 194 (279)
T PRK13650 175 -----GRLELIKTIKGIRDDYQMTV 194 (279)
T ss_pred -----HHHHHHHHHHHHHHhcCCEE
Confidence 33444455555443 25443
No 119
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.63 E-value=1.9e-16 Score=171.81 Aligned_cols=191 Identities=16% Similarity=0.137 Sum_probs=139.2
Q ss_pred eecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCc----ccc-----------cccc
Q 006782 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY----NDS-----------SRII 108 (631)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~----~~~-----------~~~i 108 (631)
..+|...+++++||.+++|+ +++|+|+||||||||+++|++++ |+.|.|.+||. ... .+.+
T Consensus 32 ~~~g~~~~l~~vsf~i~~Ge---i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 32 DETGLVVGVANASLDIEEGE---ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HhhCCEEEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 45678889999999999999 99999999999999999999999 89999999984 111 1358
Q ss_pred ccccCCCCCCchhhHHHHHHHhhc--cc--------------cccc-cccccccccccCceeeeecCccEEEEeechhcc
Q 006782 109 DGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (631)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~--g~--------------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~ 171 (631)
+|+||++.+++..++.+|+..... +. .+.. +..+...++.++|+.+++..++.++.++.+++.
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLl 188 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLM 188 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999975321 10 0111 123444456788999999999999999999999
Q ss_pred ccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCc
Q 006782 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNP 250 (631)
Q Consensus 172 dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~ 250 (631)
||+++.+|.. ..+.+..+.+++.. .| .+=++|.++.+....++++
T Consensus 189 DEPts~LD~~-------~r~~l~~~L~~l~~~~~---------------------------~TII~iTHdl~e~~~l~Dr 234 (382)
T TIGR03415 189 DEPFSALDPL-------IRTQLQDELLELQAKLN---------------------------KTIIFVSHDLDEALKIGNR 234 (382)
T ss_pred ECCCccCCHH-------HHHHHHHHHHHHHHhcC---------------------------CEEEEEeCCHHHHHHhCCE
Confidence 9999999983 12222222222211 12 2345555555544567788
Q ss_pred eeeeccCCcccHHHHHHHhccc
Q 006782 251 TYILKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 251 v~iLKs~~~v~~~~Ik~vL~~~ 272 (631)
+++|+.+..+..+...+++..+
T Consensus 235 I~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 235 IAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred EEEEECCEEEEecCHHHHhhCc
Confidence 8888888777666666666543
No 120
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=3.7e-16 Score=159.42 Aligned_cols=137 Identities=20% Similarity=0.170 Sum_probs=107.3
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ | ..|.|.++|.... .
T Consensus 8 ~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (253)
T PRK14267 8 VNLRVYYGSNHVIKGVDLKIPQNG---VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR 84 (253)
T ss_pred EeEEEEeCCeeeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHh
Confidence 444555555679999999999999 99999999999999999999998 5 3899999987532 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--c-----cc----c-------cc-----cccccccccccCceeeeecCccEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G-----KA----V-------QV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g-----~~----I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VL 162 (631)
+.+++++|++.+++..++.+++..... + .. + .. ...+......++|+.+++..++++
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARAL 164 (253)
T ss_pred hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHH
Confidence 357899999999988899999864221 1 00 0 00 012233345777889999999999
Q ss_pred EEeechhccccccCCCcE
Q 006782 163 IIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 163 IvEGi~lL~dEl~~~lDl 180 (631)
+.++.+++.|||+..+|.
T Consensus 165 ~~~p~llllDEP~~~LD~ 182 (253)
T PRK14267 165 AMKPKILLMDEPTANIDP 182 (253)
T ss_pred hcCCCEEEEcCCCccCCH
Confidence 999999999999999997
No 121
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2.3e-16 Score=166.44 Aligned_cols=184 Identities=14% Similarity=0.200 Sum_probs=129.7
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccc--------------------------
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------------------------- 103 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~-------------------------- 103 (631)
.+|+++||.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|...
T Consensus 21 ~~l~~vsl~i~~Ge---~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T PRK13651 21 KALDNVSVEINQGE---FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKI 97 (305)
T ss_pred cceeeeEEEEeCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccccccccccccccccccc
Confidence 58999999999999 89999999999999999999999 8999999986532
Q ss_pred -----cccccccccCCCC-CCchhhHHHHHHHhhc--cc--------------cccc--cccccccccccCceeeeecCc
Q 006782 104 -----SSRIIDGNFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQV--PIYDFKSSSRIGYRTLEVPSS 159 (631)
Q Consensus 104 -----~~~~i~~vfq~p~-l~d~~tl~e~L~~L~~--g~--------------~I~~--Pvyd~~~~~rs~~~~~~v~~a 159 (631)
..+.++|+||+|. .+...++.+++..... +. .+.. ...+......++|+.+++..+
T Consensus 98 ~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA 177 (305)
T PRK13651 98 KKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALA 177 (305)
T ss_pred chHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHH
Confidence 0235789999873 3344689999864321 10 0112 123444567788999999999
Q ss_pred cEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeC
Q 006782 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (631)
Q Consensus 160 ~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N 239 (631)
++++.++.+++.|||+..+|.. ....+..+.+++.+.|.++ +++.+
T Consensus 178 ~aL~~~P~lLlLDEPt~~LD~~-------~~~~l~~~l~~l~~~g~ti---------------------------iivtH 223 (305)
T PRK13651 178 GILAMEPDFLVFDEPTAGLDPQ-------GVKEILEIFDNLNKQGKTI---------------------------ILVTH 223 (305)
T ss_pred HHHHhCCCEEEEeCCCCCCCHH-------HHHHHHHHHHHHHHCCCEE---------------------------EEEee
Confidence 9999999999999999999973 3334444445444334443 33333
Q ss_pred CCCCCCCCCCceeeeccCCcccHHHHHHHhcc
Q 006782 240 KFNPFTGFQNPTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 240 ~~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
+.+.....++++++|+.+..+..+...+++..
T Consensus 224 d~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 224 DLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 33333355677777777766655555555544
No 122
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=3.7e-16 Score=159.20 Aligned_cols=193 Identities=15% Similarity=0.193 Sum_probs=134.7
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CC-----ceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~-----~G~I~lDg~~~~---------~ 105 (631)
+++++.++...+++++||.+.+|+ ++||+|+||||||||+++|+|.+ |. .|.|.++|.... .
T Consensus 8 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T PRK14272 8 QDVNIYYGDKQAVKNVNLDVQRGT---VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84 (252)
T ss_pred eeeEEEECCEEeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhh
Confidence 444455555679999999999999 89999999999999999999998 53 799999986532 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--c---cc-----cc-----c-------cccccccccccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G---KA-----VQ-----V-------PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g---~~-----I~-----~-------Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
..++|+||++.+++..++.+++..... + .. +. . ...+...+..++|+.+++..+++++
T Consensus 85 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14272 85 RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA 164 (252)
T ss_pred ceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 358899999998888899998864221 1 00 00 0 1123334567788999999999999
Q ss_pred EeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
.++.+++.|||+..+|.. ....+..+.+++.+ + .+=+++.++.+.
T Consensus 165 ~~p~llllDEP~~~LD~~-------~~~~l~~~l~~~~~-~---------------------------~tiii~sH~~~~ 209 (252)
T PRK14272 165 VEPEILLMDEPTSALDPA-------STARIEDLMTDLKK-V---------------------------TTIIIVTHNMHQ 209 (252)
T ss_pred cCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHhc-C---------------------------CeEEEEeCCHHH
Confidence 999999999999999973 12222222222211 1 223444455554
Q ss_pred CCCCCCceeeeccCCcccHHHHHHHhcc
Q 006782 244 FTGFQNPTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 244 ~~~~~n~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
....++.+++|+.+..+..+...+++..
T Consensus 210 ~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14272 210 AARVSDTTSFFLVGDLVEHGPTDQLFTN 237 (252)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 4556788888888876655555555543
No 123
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=3.3e-16 Score=160.62 Aligned_cols=193 Identities=11% Similarity=0.156 Sum_probs=133.3
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...+|++++|.+.+|+ ++||+|+||||||||+++|+|++ | +.|.|.++|.... .
T Consensus 16 ~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 92 (258)
T PRK14268 16 ENLNLWYGEKQALKNVSMQIPKNS---VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELR 92 (258)
T ss_pred eeeEEEeCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHh
Confidence 444455555679999999999999 99999999999999999999997 3 6999999987531 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--ccc-------c-------cc-----cccccccccccCceeeeecCccEEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GKA-------V-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g~~-------I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
+.++|+||++.+++ .++.+++..... +.. + .. ...+......++|+.+++..++.++.
T Consensus 93 ~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 171 (258)
T PRK14268 93 KNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV 171 (258)
T ss_pred hhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 35789999998887 799998864321 100 0 00 11233345677889999999999999
Q ss_pred eechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCC
Q 006782 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (631)
Q Consensus 165 EGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (631)
++.+++.|||+..+|.. ..+.+..+.+.+.+ |.+ =+++.++.+..
T Consensus 172 ~p~llllDEPt~~LD~~-------~~~~l~~~l~~l~~-~~t---------------------------iiivsH~~~~~ 216 (258)
T PRK14268 172 KPKIILFDEPTSALDPI-------STARIEDLIMNLKK-DYT---------------------------IVIVTHNMQQA 216 (258)
T ss_pred CCCEEEEeCCCcccCHH-------HHHHHHHHHHHHhh-CCE---------------------------EEEEECCHHHH
Confidence 99999999999999983 22223333333221 222 23334444333
Q ss_pred CCCCCceeeeccCCcccHHHHHHHhccc
Q 006782 245 TGFQNPTYILKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 245 ~~~~n~v~iLKs~~~v~~~~Ik~vL~~~ 272 (631)
...++.+++|+.++.+..+...+++..+
T Consensus 217 ~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 244 (258)
T PRK14268 217 ARISDYTGFFLMGELIEFGQTRQIFHNP 244 (258)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 4567777888877766555555555443
No 124
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=4e-16 Score=159.15 Aligned_cols=135 Identities=21% Similarity=0.229 Sum_probs=104.5
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC------CCceEEEECCcccc---------cc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---------SR 106 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll------p~~G~I~lDg~~~~---------~~ 106 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|+. |+.|.|.++|.... .+
T Consensus 11 ~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 87 (253)
T PRK14242 11 GLSFFYGDFQALHDISLEFEQNQ---VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRR 87 (253)
T ss_pred eeEEEECCeeeecceeEEEeCCC---EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhh
Confidence 33344455679999999999999 89999999999999999999985 36899999996532 13
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc--cc--------cc-------cc-----cccccccccccCceeeeecCccEEEE
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GK--------AV-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--g~--------~I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
.++|++|++.+|+ .++.+++..... +. .+ .. ...+......++|+.+++..++.++.
T Consensus 88 ~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~ 166 (253)
T PRK14242 88 RVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV 166 (253)
T ss_pred cEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 5889999998887 489999864211 10 00 00 01233345678889999999999999
Q ss_pred eechhccccccCCCcE
Q 006782 165 EGIYALSEKLRPLIDL 180 (631)
Q Consensus 165 EGi~lL~dEl~~~lDl 180 (631)
++.+++.|||+..+|.
T Consensus 167 ~p~llllDEPt~~LD~ 182 (253)
T PRK14242 167 EPEVLLMDEPASALDP 182 (253)
T ss_pred CCCEEEEeCCcccCCH
Confidence 9999999999999997
No 125
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.63 E-value=5e-16 Score=150.12 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=95.4
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (631)
..++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++.+++ .
T Consensus 15 ~~~l~~~~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (173)
T cd03246 15 PPVLRNVSFSIEPGE---SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-G 90 (173)
T ss_pred CcceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCcccc-C
Confidence 458999999999999 89999999999999999999999 89999999986432 245789999998877 4
Q ss_pred hHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 122 TLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 122 tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
++.+++ .++|+.+++..++.++.++.+++.|||+..+|..
T Consensus 91 tv~~~l--------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~ 130 (173)
T cd03246 91 SIAENI--------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVE 130 (173)
T ss_pred cHHHHC--------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHH
Confidence 888886 5677888999999999999999999999999983
No 126
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=2.7e-16 Score=171.62 Aligned_cols=190 Identities=15% Similarity=0.157 Sum_probs=134.7
Q ss_pred ecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------ccccccccC
Q 006782 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFD 113 (631)
Q Consensus 46 ~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~vfq 113 (631)
.++...+++++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++|+||
T Consensus 37 ~~~~~~~L~~isl~i~~Ge---i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q 113 (400)
T PRK10070 37 KTGLSLGVKDASLAIEEGE---IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQ 113 (400)
T ss_pred hcCCeEEEEeEEEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEEC
Confidence 3466678999999999999 99999999999999999999999 89999999997532 135899999
Q ss_pred CCCCCchhhHHHHHHHhhc--cc-------c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 114 DPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--g~-------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
++.+|+..++.+|+..... +. . +.. ...+...+..++|+.+++..+++++.++.+++.|||+.
T Consensus 114 ~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts 193 (400)
T PRK10070 114 SFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFS 193 (400)
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 9999999999999975321 10 0 111 12233446778899999999999999999999999999
Q ss_pred CCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeec
Q 006782 177 LIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILK 255 (631)
Q Consensus 177 ~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLK 255 (631)
.+|.. ..+.+..+.+++.. .|.+ =+++.++.+.....++.+++|+
T Consensus 194 ~LD~~-------~r~~l~~~L~~l~~~~g~T---------------------------IIivTHd~~~~~~~~Dri~vL~ 239 (400)
T PRK10070 194 ALDPL-------IRTEMQDELVKLQAKHQRT---------------------------IVFISHDLDEAMRIGDRIAIMQ 239 (400)
T ss_pred cCCHH-------HHHHHHHHHHHHHHHCCCe---------------------------EEEEECCHHHHHHhCCEEEEEE
Confidence 99973 22222333333221 2332 2344444443345567777887
Q ss_pred cCCcccHHHHHHHhccc
Q 006782 256 STRPVTVDEIKAVMSKE 272 (631)
Q Consensus 256 s~~~v~~~~Ik~vL~~~ 272 (631)
.++.+..+...+++..+
T Consensus 240 ~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 240 NGEVVQVGTPDEILNNP 256 (400)
T ss_pred CCEEEecCCHHHHHhCc
Confidence 77655444455555443
No 127
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.62 E-value=3.6e-16 Score=156.42 Aligned_cols=127 Identities=21% Similarity=0.343 Sum_probs=100.5
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------ccccccccCCC--CC
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDP--RL 117 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~vfq~p--~l 117 (631)
.+++++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGE---TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 68999999999999 99999999999999999999998 89999999996432 13588999998 45
Q ss_pred CchhhHHHHHHHhhc--c--------cc--------cccc--ccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 118 TDYDTLLENIRGLKE--G--------KA--------VQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~--g--------~~--------I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
++..++.+++..... + .. ...+ ..+......++|+.+++..+++++.++.+++.|||+..
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 175 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSA 175 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCC
Confidence 556788888753210 0 00 0111 12333456778899999999999999999999999999
Q ss_pred CcE
Q 006782 178 IDL 180 (631)
Q Consensus 178 lDl 180 (631)
+|.
T Consensus 176 LD~ 178 (228)
T cd03257 176 LDV 178 (228)
T ss_pred CCH
Confidence 997
No 128
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.62 E-value=4.9e-16 Score=157.36 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=107.4
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------cccccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNF 112 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vf 112 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|.+ |+.|.|.++|.... .+.++++|
T Consensus 7 ~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 83 (242)
T TIGR03411 7 GLSVSFDGFKALNDLSLYVDPGE---LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKF 83 (242)
T ss_pred eeEEEcCCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEec
Confidence 33444455679999999999999 89999999999999999999998 89999999997432 13488999
Q ss_pred CCCCCCchhhHHHHHHHhhcc-------------c----c-------ccc-cccccccccccCceeeeecCccEEEEeec
Q 006782 113 DDPRLTDYDTLLENIRGLKEG-------------K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~g-------------~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi 167 (631)
|++.+++..++.+++...... . . +.. +..+......++|+.+++..+++++.++.
T Consensus 84 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~ 163 (242)
T TIGR03411 84 QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPK 163 (242)
T ss_pred cccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999888999988653110 0 0 001 11233345577889999999999999999
Q ss_pred hhccccccCCCcE
Q 006782 168 YALSEKLRPLIDL 180 (631)
Q Consensus 168 ~lL~dEl~~~lDl 180 (631)
+++.|||+..+|.
T Consensus 164 ~lllDEPt~~LD~ 176 (242)
T TIGR03411 164 LLLLDEPVAGMTD 176 (242)
T ss_pred EEEecCCccCCCH
Confidence 9999999999997
No 129
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=3.4e-16 Score=163.67 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=102.6
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------ccccccccCCCC-
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPR- 116 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~vfq~p~- 116 (631)
..+|+++||.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.+||.... .+.++|+||+|.
T Consensus 20 ~~~L~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGS---YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 468999999999999 99999999999999999999999 89999999997542 135899999973
Q ss_pred -CCchhhHHHHHHHhhc--c-------c-------ccccc--ccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 117 -LTDYDTLLENIRGLKE--G-------K-------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 117 -l~d~~tl~e~L~~L~~--g-------~-------~I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
++ ..++.+++..... + . .+.++ ..+......++|+.+++..+++++.++.+++.|||+..
T Consensus 97 ~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~ 175 (290)
T PRK13634 97 QLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAG 175 (290)
T ss_pred hhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 44 4689999864211 1 0 11121 22444566788899999999999999999999999999
Q ss_pred CcEE
Q 006782 178 IDLR 181 (631)
Q Consensus 178 lDlk 181 (631)
+|..
T Consensus 176 LD~~ 179 (290)
T PRK13634 176 LDPK 179 (290)
T ss_pred CCHH
Confidence 9983
No 130
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.62 E-value=7.9e-16 Score=149.92 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=96.9
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccccCCC---CCCc
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDP---RLTD 119 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vfq~p---~l~d 119 (631)
++++++|.+++|+ +++|+|+||||||||+++|++.+ |+.|.|.++|.... .+.++|+||++ .+++
T Consensus 15 ~l~~vs~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (182)
T cd03215 15 AVRDVSFEVRAGE---IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVL 91 (182)
T ss_pred eecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccC
Confidence 7999999999999 89999999999999999999999 89999999996432 23578999985 4677
Q ss_pred hhhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 120 YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 120 ~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
..++.+++..... .++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 92 ~~t~~e~l~~~~~---------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~ 138 (182)
T cd03215 92 DLSVAENIALSSL---------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG 138 (182)
T ss_pred CCcHHHHHHHHhh---------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHH
Confidence 7899999865321 6678888999999999999999999999999973
No 131
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=3.8e-16 Score=162.99 Aligned_cols=183 Identities=16% Similarity=0.245 Sum_probs=127.6
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------ccccccccCCCC-
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPR- 116 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~vfq~p~- 116 (631)
+.++++++|.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+||.... ...++++||+|.
T Consensus 20 ~~~l~~vsl~i~~Ge---~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGS---FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 468999999999999 99999999999999999999999 89999999997532 135789999973
Q ss_pred -CCchhhHHHHHHHhhc--c---c-----------cccc--cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 117 -LTDYDTLLENIRGLKE--G---K-----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 117 -l~d~~tl~e~L~~L~~--g---~-----------~I~~--Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
++ ..++.+++..... + . .+.. ...+...+..++|+.+++..+++++.++.+++.|||+..
T Consensus 97 ~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~g 175 (287)
T PRK13641 97 QLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175 (287)
T ss_pred hhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 44 4688998864211 1 0 0111 122344456788899999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccC
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKST 257 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~ 257 (631)
+|.. ..+.+..+.+.+.+.|.++ +++.++.+....+|+.+++|+.+
T Consensus 176 LD~~-------~~~~l~~~l~~l~~~g~tv---------------------------livsH~~~~~~~~~d~v~~l~~G 221 (287)
T PRK13641 176 LDPE-------GRKEMMQLFKDYQKAGHTV---------------------------ILVTHNMDDVAEYADDVLVLEHG 221 (287)
T ss_pred CCHH-------HHHHHHHHHHHHHhCCCEE---------------------------EEEeCCHHHHHHhCCEEEEEECC
Confidence 9973 3333444444443334332 33333333333456777777776
Q ss_pred CcccHHHHHHHhc
Q 006782 258 RPVTVDEIKAVMS 270 (631)
Q Consensus 258 ~~v~~~~Ik~vL~ 270 (631)
..+..+...+++.
T Consensus 222 ~i~~~g~~~~~~~ 234 (287)
T PRK13641 222 KLIKHASPKEIFS 234 (287)
T ss_pred EEEEeCCHHHHhc
Confidence 6554444444443
No 132
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.62 E-value=3.9e-16 Score=175.12 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=118.3
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc--------cccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDGN 111 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~--------~~i~~v 111 (631)
+++++.++...+|+++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|..... ..++|+
T Consensus 15 ~~l~~~~~~~~il~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 91 (510)
T PRK15439 15 RSISKQYSGVEVLKGIDFTLHAGE---VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLV 91 (510)
T ss_pred EeEEEEeCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 344555556679999999999999 99999999999999999999999 899999999864321 347899
Q ss_pred cCCCCCCchhhHHHHHHHhhccc------------ccccc-ccccccccccCceeeeecCccEEEEeechhccccccCCC
Q 006782 112 FDDPRLTDYDTLLENIRGLKEGK------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g~------------~I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
||++.+++..++.+++....... .+... ..+...+..++|+++++..+++++.++.+++.|||+..+
T Consensus 92 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~L 171 (510)
T PRK15439 92 PQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASL 171 (510)
T ss_pred eccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 99999999899999986432110 01111 234445678889999999999999999999999999999
Q ss_pred cEEEEEEcChhhHHHHHHHHHHHHhCCC
Q 006782 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (631)
Q Consensus 179 DlkIfVdad~d~rLiRRI~RDv~erG~s 206 (631)
|.. ....+..+.+++.+.|.+
T Consensus 172 D~~-------~~~~l~~~l~~~~~~g~t 192 (510)
T PRK15439 172 TPA-------ETERLFSRIRELLAQGVG 192 (510)
T ss_pred CHH-------HHHHHHHHHHHHHHCCCE
Confidence 983 333344444444444444
No 133
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.62 E-value=3.1e-16 Score=163.04 Aligned_cols=200 Identities=17% Similarity=0.194 Sum_probs=154.1
Q ss_pred ecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-----------cccccccC
Q 006782 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-----------RIIDGNFD 113 (631)
Q Consensus 46 ~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-----------~~i~~vfq 113 (631)
+.|...-++++||.++.|+ |..|.|-||||||||+|+|.++. |+.|.|.+||.+... ++++++||
T Consensus 37 ~tg~vvGv~~~sl~v~~Ge---IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ 113 (386)
T COG4175 37 KTGLVVGVNDASLDVEEGE---IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQ 113 (386)
T ss_pred hhCcEEeeccceeeecCCe---EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhh
Confidence 3466677999999999999 99999999999999999999999 999999999985432 56899999
Q ss_pred CCCCCchhhHHHHHHHhhccc----------------ccccc-ccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 114 DPRLTDYDTLLENIRGLKEGK----------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~g~----------------~I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
++.++++.|+.+|+.+-.+-. .+... .-++..++.+||..++++.++.+..++.++|.||+++
T Consensus 114 ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFS 193 (386)
T COG4175 114 SFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFS 193 (386)
T ss_pred hhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchh
Confidence 999999999999998644311 11122 2234467899999999999999999999999999999
Q ss_pred CCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 177 ~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
.+|+ |+|+=..|. +-+.... .+..-+-|.++.|-.-.+-++++|||.
T Consensus 194 ALDP-----------LIR~~mQde----------Ll~Lq~~------------l~KTIvFitHDLdEAlriG~rIaimkd 240 (386)
T COG4175 194 ALDP-----------LIRTEMQDE----------LLELQAK------------LKKTIVFITHDLDEALRIGDRIAIMKD 240 (386)
T ss_pred hcCh-----------HHHHHHHHH----------HHHHHHH------------hCCeEEEEecCHHHHHhccceEEEecC
Confidence 9998 344322221 1111111 123355567777777778899999999
Q ss_pred CCcccHHHHHHHhccccccccccee
Q 006782 257 TRPVTVDEIKAVMSKEHTETTEETY 281 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~~~~~~~~~~f~ 281 (631)
+..+-.+.=.+++.++.......|.
T Consensus 241 G~ivQ~Gtp~eIl~~PAndYV~~Fv 265 (386)
T COG4175 241 GEIVQVGTPEEILLNPANDYVRDFV 265 (386)
T ss_pred CeEEEeCCHHHHHcCccHHHHHHHH
Confidence 9998888888888887666655555
No 134
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.62 E-value=6e-16 Score=166.36 Aligned_cols=192 Identities=15% Similarity=0.149 Sum_probs=132.8
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------cccccc
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDG 110 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~ 110 (631)
+++.++.+. + +++|.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.+++
T Consensus 5 l~~~~~~~~-~-~isl~i~~Ge---i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 5 FSKRLGDFS-L-DADFTLPGQG---VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEECCEE-E-EEEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 344455544 4 8999999999 99999999999999999999999 89999999986431 245889
Q ss_pred ccCCCCCCchhhHHHHHHHhhcc---cc----c-------cc-cccccccccccCceeeeecCccEEEEeechhcccccc
Q 006782 111 NFDDPRLTDYDTLLENIRGLKEG---KA----V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~g---~~----I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~ 175 (631)
+||++.+|+..++.+++...... .. + .. +..+...++.++|+++++..+++++.++.+++.|||+
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPt 159 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL 159 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 99999999999999999753211 00 0 01 1123334567889999999999999999999999999
Q ss_pred CCCcEEEEEEcChhhHHHHHHHHHHHHh-CCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeee
Q 006782 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYIL 254 (631)
Q Consensus 176 ~~lDlkIfVdad~d~rLiRRI~RDv~er-G~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iL 254 (631)
..+|.. ..+.++.+.+.+.+. |.++ +++.++.+.....++.+++|
T Consensus 160 s~LD~~-------~~~~l~~~L~~l~~~~g~ti---------------------------iivtH~~~~~~~~~d~i~~l 205 (354)
T TIGR02142 160 AALDDP-------RKYEILPYLERLHAEFGIPI---------------------------LYVSHSLQEVLRLADRVVVL 205 (354)
T ss_pred cCCCHH-------HHHHHHHHHHHHHHhcCCEE---------------------------EEEecCHHHHHHhCCEEEEE
Confidence 999983 222333333433322 4332 23333332223455666777
Q ss_pred ccCCcccHHHHHHHhcccc
Q 006782 255 KSTRPVTVDEIKAVMSKEH 273 (631)
Q Consensus 255 Ks~~~v~~~~Ik~vL~~~~ 273 (631)
+.+..+..+...+++..+.
T Consensus 206 ~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 206 EDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred eCCEEEEECCHHHHhcCcC
Confidence 7766555555566665544
No 135
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.62 E-value=7.7e-16 Score=158.04 Aligned_cols=199 Identities=14% Similarity=0.206 Sum_probs=141.8
Q ss_pred eeeeeccceeEeecC-----ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccc
Q 006782 34 YEIVPIEDTLSFEKG-----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRI 107 (631)
Q Consensus 34 ~ei~~v~~~ls~~~g-----~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~ 107 (631)
.++..+.+.|....+ ...++++|||.+.+|+ ++||+|.|||||||+.|+|.+++ |+.|.|.++|.+.....
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge---~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGE---TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS 81 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCC---EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc
Confidence 344455555543332 4689999999999999 99999999999999999999999 89999999997643211
Q ss_pred cccccCCCCCCchhhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcC
Q 006782 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGG 187 (631)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad 187 (631)
.....+.+..+...-......+....|+.+||+.+++..++++++++.++..||+.+++|..+
T Consensus 82 ------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSi----- 144 (268)
T COG4608 82 ------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV----- 144 (268)
T ss_pred ------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhH-----
Confidence 111222222222211122224556678899999999999999999999999999999999841
Q ss_pred hhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCcccHHHHH
Q 006782 188 VHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIK 266 (631)
Q Consensus 188 ~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~v~~~~Ik 266 (631)
...+..+.+++.+ .|.+ =+-|.++....+.++++++||..++.++.+..+
T Consensus 145 --qaqIlnLL~dlq~~~~lt---------------------------~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~ 195 (268)
T COG4608 145 --QAQILNLLKDLQEELGLT---------------------------YLFISHDLSVVRYISDRIAVMYLGKIVEIGPTE 195 (268)
T ss_pred --HHHHHHHHHHHHHHhCCe---------------------------EEEEEEEHHhhhhhcccEEEEecCceeEecCHH
Confidence 2233444444432 2433 233344444457778899999999999999999
Q ss_pred HHhccccccccccee
Q 006782 267 AVMSKEHTETTEETY 281 (631)
Q Consensus 267 ~vL~~~~~~~~~~f~ 281 (631)
++|.++....++..+
T Consensus 196 ~~~~~p~HpYTk~Ll 210 (268)
T COG4608 196 EVFSNPLHPYTKALL 210 (268)
T ss_pred HHhhCCCCHHHHHHH
Confidence 999988776666555
No 136
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.62 E-value=4.1e-16 Score=155.00 Aligned_cols=135 Identities=16% Similarity=0.165 Sum_probs=104.9
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--ccccccccCCCCCCc
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRLTD 119 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--~~~i~~vfq~p~l~d 119 (631)
+++.++...+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|++|++.++.
T Consensus 5 l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~ 81 (213)
T cd03235 5 LTVSYGGHPVLEDVSFEVKPGE---FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDR 81 (213)
T ss_pred ceeEECCEEeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccccc
Confidence 3344455679999999999999 89999999999999999999998 89999999997432 346899999987632
Q ss_pred --hhhHHHHHHHhhcc---------c----cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 120 --YDTLLENIRGLKEG---------K----AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 120 --~~tl~e~L~~L~~g---------~----~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
..++.+++...... . .+ .. +..+...+..++|+++++..+++++.++.+++.|||+.
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 161 (213)
T cd03235 82 DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161 (213)
T ss_pred CCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 26889988642110 0 00 01 11233345678889999999999999999999999999
Q ss_pred CCcE
Q 006782 177 LIDL 180 (631)
Q Consensus 177 ~lDl 180 (631)
.+|.
T Consensus 162 ~LD~ 165 (213)
T cd03235 162 GVDP 165 (213)
T ss_pred cCCH
Confidence 9997
No 137
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=8.2e-16 Score=151.16 Aligned_cols=116 Identities=12% Similarity=-0.020 Sum_probs=100.2
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC---CCceEEEECCcccc---ccccccccCCCCCCchhhH
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDS---SRIIDGNFDDPRLTDYDTL 123 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll---p~~G~I~lDg~~~~---~~~i~~vfq~p~l~d~~tl 123 (631)
..++++++|.+++|+ +++|+|+||||||||+++|++.. |..|.|.+++.... .+.+++++|++.+++..++
T Consensus 20 ~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv 96 (192)
T cd03232 20 RQLLNNISGYVKPGT---LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTV 96 (192)
T ss_pred eEeEEccEEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcH
Confidence 568999999999999 89999999999999999999974 68999999987532 2457899999998888899
Q ss_pred HHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 124 LENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 124 ~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.+++...... +..++++.+++..+++++.++.+++.|||+..+|.
T Consensus 97 ~~~l~~~~~~------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~ 141 (192)
T cd03232 97 REALRFSALL------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS 141 (192)
T ss_pred HHHHHHHHHH------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH
Confidence 9998753210 16778899999999999999999999999999997
No 138
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.62 E-value=4.7e-16 Score=160.24 Aligned_cols=137 Identities=20% Similarity=0.179 Sum_probs=108.6
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--ccccccccCCCCCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRLT 118 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--~~~i~~vfq~p~l~ 118 (631)
++++.++...+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+++.... .+.++|+||++.++
T Consensus 17 ~l~~~~~~~~il~~isl~i~~Ge---~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~ 93 (257)
T PRK11247 17 AVSKRYGERTVLNQLDLHIPAGQ---FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLL 93 (257)
T ss_pred EEEEEECCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCC
Confidence 33444455679999999999999 89999999999999999999999 89999999886432 34688999999988
Q ss_pred chhhHHHHHHHhhcc---cc-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 119 DYDTLLENIRGLKEG---KA-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 119 d~~tl~e~L~~L~~g---~~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
+..++.+++...... .. ... +..+......++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 94 ~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~ 167 (257)
T PRK11247 94 PWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDAL 167 (257)
T ss_pred CCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 888999998642111 00 111 1223344567888999999999999999999999999999983
No 139
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=7.2e-16 Score=157.33 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=106.8
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc--------ccccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDGNF 112 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~--------~~i~~vf 112 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|..... ..++++|
T Consensus 10 ~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 86 (255)
T PRK11300 10 GLMMRFGGLLAVNNVNLEVREQE---IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTF 86 (255)
T ss_pred eEEEEECCEEEEEeeeeEEcCCe---EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEec
Confidence 33444455679999999999999 99999999999999999999998 899999999975321 2367789
Q ss_pred CCCCCCchhhHHHHHHHhhcc------------------c------cc-------cc-cccccccccccCceeeeecCcc
Q 006782 113 DDPRLTDYDTLLENIRGLKEG------------------K------AV-------QV-PIYDFKSSSRIGYRTLEVPSSR 160 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~g------------------~------~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~ 160 (631)
|++.+++..++.+++...... . .+ .. ...+...+..++|+.+++..++
T Consensus 87 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~ 166 (255)
T PRK11300 87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIAR 166 (255)
T ss_pred cCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHH
Confidence 999999888999988742110 0 00 00 1122333457788999999999
Q ss_pred EEEEeechhccccccCCCcE
Q 006782 161 IVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 161 VLIvEGi~lL~dEl~~~lDl 180 (631)
+++.++.+++.|||+..+|.
T Consensus 167 al~~~p~llllDEPt~~LD~ 186 (255)
T PRK11300 167 CMVTQPEILMLDEPAAGLNP 186 (255)
T ss_pred HHhcCCCEEEEcCCccCCCH
Confidence 99999999999999999998
No 140
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.61 E-value=4.7e-16 Score=153.46 Aligned_cols=135 Identities=16% Similarity=0.153 Sum_probs=107.3
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------cccccc
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDG 110 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~ 110 (631)
+++.++...+++++||.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.+++
T Consensus 4 l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 4 ISKKFGDKIILDDLNLTIEKGK---MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred eEEEECCEEEEeceEEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 3444555679999999999999 89999999999999999999999 89999999997521 135889
Q ss_pred ccCCCCCCchhhHHHHHHHhhc--c-------cc-------ccc-cccccccccccCceeeeecCccEEEEeechhcccc
Q 006782 111 NFDDPRLTDYDTLLENIRGLKE--G-------KA-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~--g-------~~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dE 173 (631)
++|++.+++..++.+++..... + .. ... ...+...+..++|+.+++..++.++.++.+++.||
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999888899998865221 0 00 011 11233345677889999999999999999999999
Q ss_pred ccCCCcE
Q 006782 174 LRPLIDL 180 (631)
Q Consensus 174 l~~~lDl 180 (631)
|+..+|.
T Consensus 161 Pt~~LD~ 167 (206)
T TIGR03608 161 PTGSLDP 167 (206)
T ss_pred CcCCCCH
Confidence 9999997
No 141
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4.1e-16 Score=159.33 Aligned_cols=190 Identities=15% Similarity=0.141 Sum_probs=132.1
Q ss_pred EeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------cccc
Q 006782 44 SFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------SRII 108 (631)
Q Consensus 44 s~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~~~i 108 (631)
++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ | +.|.|.++|.... .+.+
T Consensus 14 ~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 90 (254)
T PRK14273 14 NLFYTDFKALNNINIKILKNS---ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKI 90 (254)
T ss_pred EEEeCCceeecceeeEEcCCC---EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhce
Confidence 344445678999999999999 99999999999999999999998 5 3899999986431 2358
Q ss_pred ccccCCCCCCchhhHHHHHHHhhc--cc----c----cc-------c-----cccccccccccCceeeeecCccEEEEee
Q 006782 109 DGNFDDPRLTDYDTLLENIRGLKE--GK----A----VQ-------V-----PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (631)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~--g~----~----I~-------~-----Pvyd~~~~~rs~~~~~~v~~a~VLIvEG 166 (631)
+|++|++.++. .++.+++..... +. . +. . ..++......++|+.+++..++.++.++
T Consensus 91 ~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 169 (254)
T PRK14273 91 GMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEP 169 (254)
T ss_pred EEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 89999998885 799998864221 10 0 00 0 1234444567888999999999999999
Q ss_pred chhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCC
Q 006782 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTG 246 (631)
Q Consensus 167 i~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~ 246 (631)
.+++.|||+..+|.. ..+.+..+.+.+.. +. +=+++.++.+....
T Consensus 170 ~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~-~~---------------------------tvii~sH~~~~~~~ 214 (254)
T PRK14273 170 NVILMDEPTSALDPI-------STGKIEELIINLKE-SY---------------------------TIIIVTHNMQQAGR 214 (254)
T ss_pred CEEEEeCCCcccCHH-------HHHHHHHHHHHHhc-CC---------------------------EEEEEeCCHHHHHH
Confidence 999999999999973 22222222222211 11 23344444443345
Q ss_pred CCCceeeeccCCcccHHHHHHHhccc
Q 006782 247 FQNPTYILKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 247 ~~n~v~iLKs~~~v~~~~Ik~vL~~~ 272 (631)
.++++++|+.+..+..+...+++.++
T Consensus 215 ~~d~i~~l~~G~i~~~g~~~~~~~~~ 240 (254)
T PRK14273 215 ISDRTAFFLNGCIEEESSTDELFFNP 240 (254)
T ss_pred hCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 67778888887766656666665543
No 142
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.61 E-value=7e-16 Score=158.50 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=106.4
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFD 113 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq 113 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.+++++|
T Consensus 7 ~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (258)
T PRK13548 7 NLSVRLGGRTLLDDVSLTLRPGE---VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQ 83 (258)
T ss_pred eEEEEeCCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEcc
Confidence 34444555679999999999999 99999999999999999999998 89999999997432 135789999
Q ss_pred CCCCCchhhHHHHHHHhhc--cc-------c-------ccc-cccccccccccCceeeeecCccEEE------Eeechhc
Q 006782 114 DPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVI------IEGIYAL 170 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--g~-------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLI------vEGi~lL 170 (631)
++.+++..++.+++..... +. . +.. ...+......++|+.+++..+++++ .++.+++
T Consensus 84 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lll 163 (258)
T PRK13548 84 HSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLL 163 (258)
T ss_pred CCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 9988777899998865321 00 0 011 1123344567888999999999999 4899999
Q ss_pred cccccCCCcE
Q 006782 171 SEKLRPLIDL 180 (631)
Q Consensus 171 ~dEl~~~lDl 180 (631)
.|||+..+|.
T Consensus 164 LDEPt~~LD~ 173 (258)
T PRK13548 164 LDEPTSALDL 173 (258)
T ss_pred EeCCcccCCH
Confidence 9999999997
No 143
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=8.2e-16 Score=158.75 Aligned_cols=136 Identities=16% Similarity=0.133 Sum_probs=106.0
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...+|+++||.+.+|+ ++||+|+||||||||+++|+|++ | +.|.|.++|.... .
T Consensus 23 ~nl~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~ 99 (267)
T PRK14235 23 RDVSVFYGEKQALFDVDLDIPEKT---VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELR 99 (267)
T ss_pred EeEEEEECCEEEEEEEEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHh
Confidence 344445555679999999999999 99999999999999999999998 4 7899999996532 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--c-----cc-----------cccc-----ccccccccccCceeeeecCccEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G-----KA-----------VQVP-----IYDFKSSSRIGYRTLEVPSSRIV 162 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g-----~~-----------I~~P-----vyd~~~~~rs~~~~~~v~~a~VL 162 (631)
+.++++||++.+++. ++.+++..... + .. +... .++......++|+.+++..++++
T Consensus 100 ~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 178 (267)
T PRK14235 100 ARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAI 178 (267)
T ss_pred hceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 357899999998874 89998864211 1 00 0111 12233456778899999999999
Q ss_pred EEeechhccccccCCCcE
Q 006782 163 IIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 163 IvEGi~lL~dEl~~~lDl 180 (631)
+.++.+++.|||+..+|.
T Consensus 179 ~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14235 179 AVSPEVILMDEPCSALDP 196 (267)
T ss_pred HcCCCEEEEeCCCcCCCH
Confidence 999999999999999997
No 144
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.61 E-value=9.3e-16 Score=153.98 Aligned_cols=128 Identities=14% Similarity=0.147 Sum_probs=103.1
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------ccccccccCCCCC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPRL 117 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~vfq~p~l 117 (631)
..+++++||.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.+++++|++.+
T Consensus 23 ~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGE---TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 358999999999999 99999999999999999999998 89999999986432 1358899999998
Q ss_pred CchhhHHHHHHHhh--ccc-------c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 TDYDTLLENIRGLK--EGK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 ~d~~tl~e~L~~L~--~g~-------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++..++.+++.... .+. . ... ...+...+..++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~ 179 (228)
T PRK10584 100 IPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDR 179 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 88888999886421 110 0 011 112333456778899999999999999999999999999997
No 145
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=7.2e-16 Score=157.26 Aligned_cols=192 Identities=12% Similarity=0.134 Sum_probs=132.2
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------cc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------SR 106 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~~ 106 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|+. | ..|.|.++|.... .+
T Consensus 9 ~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (251)
T PRK14270 9 NLNLWYGEKQALNDINLPIYENK---ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRK 85 (251)
T ss_pred EeEEEECCeeeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHh
Confidence 33444445679999999999999 99999999999999999999987 4 6899999987532 23
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc--cc--c------c-------cc-----cccccccccccCceeeeecCccEEEE
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GK--A------V-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--g~--~------I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
.++++||++.+++ .++.+++..... +. . + .. ...+......++|+.+++..++.++.
T Consensus 86 ~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 164 (251)
T PRK14270 86 RVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV 164 (251)
T ss_pred heEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 5889999999887 799999864221 10 0 0 00 01223345677788999999999999
Q ss_pred eechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCC
Q 006782 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (631)
Q Consensus 165 EGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (631)
++.+++.||++..+|.. ..+.+..+.+++.+ +. +=+++.++.+..
T Consensus 165 ~p~llllDEP~~~LD~~-------~~~~l~~~L~~~~~-~~---------------------------tiiivsH~~~~~ 209 (251)
T PRK14270 165 KPDVILMDEPTSALDPI-------STLKIEDLMVELKK-EY---------------------------TIVIVTHNMQQA 209 (251)
T ss_pred CCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHh-CC---------------------------eEEEEEcCHHHH
Confidence 99999999999999983 22222223332211 11 123444444333
Q ss_pred CCCCCceeeeccCCcccHHHHHHHhccc
Q 006782 245 TGFQNPTYILKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 245 ~~~~n~v~iLKs~~~v~~~~Ik~vL~~~ 272 (631)
...++.+++|+.+..+..+...+++..+
T Consensus 210 ~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 237 (251)
T PRK14270 210 SRVSDYTAFFLMGDLIEFNKTEKIFLEP 237 (251)
T ss_pred HHhcCEEEEEECCeEEEeCCHHHHhcCC
Confidence 4567788888888766655666655543
No 146
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.61 E-value=9e-16 Score=155.20 Aligned_cols=137 Identities=13% Similarity=0.161 Sum_probs=105.5
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh--C-CCceEEEECCccccc--------ccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS--------RIIDG 110 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l--l-p~~G~I~lDg~~~~~--------~~i~~ 110 (631)
++++.++...+|+++||.+++|+ ++||+||||||||||+++|+|+ + |+.|.|.++|..... ..+++
T Consensus 5 ~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (243)
T TIGR01978 5 DLHVSVEDKEILKGVNLTVKKGE---IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFL 81 (243)
T ss_pred eEEEEECCEEEEeccceEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEe
Confidence 34445555679999999999999 8999999999999999999999 3 789999999974321 23678
Q ss_pred ccCCCCCCchhhHHHHHHHhhcc------------c----c-------cccc--ccccccc-cccCceeeeecCccEEEE
Q 006782 111 NFDDPRLTDYDTLLENIRGLKEG------------K----A-------VQVP--IYDFKSS-SRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~g------------~----~-------I~~P--vyd~~~~-~rs~~~~~~v~~a~VLIv 164 (631)
++|++.+++..++.+++...... . . ...+ ..+.... ..++|+.+++..++.++.
T Consensus 82 v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~ 161 (243)
T TIGR01978 82 AFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL 161 (243)
T ss_pred eeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhc
Confidence 99999998888888887542110 0 0 0111 1222333 377889999999999999
Q ss_pred eechhccccccCCCcEE
Q 006782 165 EGIYALSEKLRPLIDLR 181 (631)
Q Consensus 165 EGi~lL~dEl~~~lDlk 181 (631)
++.+++.|||+..+|..
T Consensus 162 ~p~llllDEPt~~LD~~ 178 (243)
T TIGR01978 162 EPKLAILDEIDSGLDID 178 (243)
T ss_pred CCCEEEecCCcccCCHH
Confidence 99999999999999983
No 147
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=6.3e-16 Score=157.47 Aligned_cols=193 Identities=13% Similarity=0.147 Sum_probs=133.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC---C---CceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll---p---~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|+. | +.|.|.++|.... .
T Consensus 9 ~~l~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14239 9 SDLSVYYNKKKALNSVSLDFYPNE---ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLR 85 (252)
T ss_pred EeeEEEECCeeeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhh
Confidence 334444455679999999999999 89999999999999999999983 5 4899999986431 2
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--c----cccc-----------c-----cccccccccccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G----KAVQ-----------V-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g----~~I~-----------~-----Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
+.+++++|++.+++ .++.+++..... + .... . ...+...+..++|+.+++..+++++
T Consensus 86 ~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14239 86 KEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA 164 (252)
T ss_pred hcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 35889999999887 799999864311 1 0000 0 0123334567788999999999999
Q ss_pred EeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
.++.+++.|||+..+|.. ....+..+.+.+.. + .+=+++.++.+.
T Consensus 165 ~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~-~---------------------------~tii~~sH~~~~ 209 (252)
T PRK14239 165 TSPKIILLDEPTSALDPI-------SAGKIEETLLGLKD-D---------------------------YTMLLVTRSMQQ 209 (252)
T ss_pred cCCCEEEEcCCccccCHH-------HHHHHHHHHHHHhh-C---------------------------CeEEEEECCHHH
Confidence 999999999999999973 22222222222211 1 123444455443
Q ss_pred CCCCCCceeeeccCCcccHHHHHHHhccc
Q 006782 244 FTGFQNPTYILKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 244 ~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~ 272 (631)
....++.+++|+.+..+..+...+++..+
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 238 (252)
T PRK14239 210 ASRISDRTGFFLDGDLIEYNDTKQMFMNP 238 (252)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 34567888888888766666666666543
No 148
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=6e-16 Score=160.50 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=111.9
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCC-CCc
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPR-LTD 119 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~-l~d 119 (631)
...+++++||.+++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++|+||+|. .+.
T Consensus 17 ~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (274)
T PRK13647 17 GTKALKGLSLSIPEGS---KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVF 93 (274)
T ss_pred CCeeeeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhc
Confidence 3468999999999999 99999999999999999999999 89999999997542 135899999974 344
Q ss_pred hhhHHHHHHHhhc--cc-------cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEEE
Q 006782 120 YDTLLENIRGLKE--GK-------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRV 182 (631)
Q Consensus 120 ~~tl~e~L~~L~~--g~-------~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkI 182 (631)
..++.+++..... +. .+ .. +..+...+..++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~- 172 (274)
T PRK13647 94 SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR- 172 (274)
T ss_pred cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHH-
Confidence 5688998864221 10 00 11 2234445677888999999999999999999999999999983
Q ss_pred EEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 183 SVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 183 fVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
....+..+.+++.+.|.++
T Consensus 173 ------~~~~l~~~l~~~~~~g~ti 191 (274)
T PRK13647 173 ------GQETLMEILDRLHNQGKTV 191 (274)
T ss_pred ------HHHHHHHHHHHHHHCCCEE
Confidence 3334445555554445443
No 149
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=6.8e-16 Score=160.62 Aligned_cols=148 Identities=15% Similarity=0.201 Sum_probs=111.8
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCC-CCch
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPR-LTDY 120 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~-l~d~ 120 (631)
..+++++||.+.+|+ ++||+|+||||||||+++|+|.+ |+.|.|.++|.... .+.++|+||++. ++..
T Consensus 20 ~~~l~~vsl~i~~Ge---~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGE---WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 469999999999999 99999999999999999999999 89999999997542 145889999984 5666
Q ss_pred hhHHHHHHHhhccc--c-------c-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEE
Q 006782 121 DTLLENIRGLKEGK--A-------V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (631)
Q Consensus 121 ~tl~e~L~~L~~g~--~-------I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIf 183 (631)
.++.+++....... . + .. +..+......++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~-- 174 (279)
T PRK13635 97 ATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR-- 174 (279)
T ss_pred ccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH--
Confidence 79999986432100 0 0 00 1233334567888999999999999999999999999999983
Q ss_pred EEcChhhHHHHHHHHHHHHh-CCCH
Q 006782 184 VTGGVHFDLVKRVFRDIQRV-GQEP 207 (631)
Q Consensus 184 Vdad~d~rLiRRI~RDv~er-G~s~ 207 (631)
....+..+.+++... |.++
T Consensus 175 -----~~~~l~~~l~~l~~~~~~ti 194 (279)
T PRK13635 175 -----GRREVLETVRQLKEQKGITV 194 (279)
T ss_pred -----HHHHHHHHHHHHHHcCCCEE
Confidence 334445555554432 4443
No 150
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=7.4e-16 Score=155.55 Aligned_cols=136 Identities=24% Similarity=0.256 Sum_probs=107.2
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDP 115 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~p 115 (631)
.+++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.+++++|++
T Consensus 5 ~l~~~~~~~~il~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 81 (232)
T cd03300 5 NVSKFYGGFVALDGVSLDIKEGE---FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNY 81 (232)
T ss_pred eEEEEeCCeeeeccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEeccc
Confidence 34445555679999999999999 99999999999999999999999 88999999987442 24688999999
Q ss_pred CCCchhhHHHHHHHhhc--c---c----c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCC
Q 006782 116 RLTDYDTLLENIRGLKE--G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~--g---~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
.+++..++.+++..... + . . +.. +..+......++|+.+++..++.++..+.+++.|||+..+
T Consensus 82 ~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gL 161 (232)
T cd03300 82 ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGAL 161 (232)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99888889988864221 0 0 0 011 1123333456778889999999999999999999999999
Q ss_pred cE
Q 006782 179 DL 180 (631)
Q Consensus 179 Dl 180 (631)
|.
T Consensus 162 D~ 163 (232)
T cd03300 162 DL 163 (232)
T ss_pred CH
Confidence 97
No 151
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=9e-16 Score=157.62 Aligned_cols=136 Identities=18% Similarity=0.134 Sum_probs=107.9
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--ccccccccCCCCCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRLT 118 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--~~~i~~vfq~p~l~ 118 (631)
++++.++...+++++||.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... ...+++++|++.++
T Consensus 6 ~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~ 82 (255)
T PRK11248 6 HLYADYGGKPALEDINLTLESGE---LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLL 82 (255)
T ss_pred EEEEEeCCeeeEeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccC
Confidence 34444455679999999999999 99999999999999999999998 89999999987542 23578999999988
Q ss_pred chhhHHHHHHHhhc--cc-------cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 119 DYDTLLENIRGLKE--GK-------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 119 d~~tl~e~L~~L~~--g~-------~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+..++.+++..... +. .+ .. +..+......++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~ 161 (255)
T PRK11248 83 PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161 (255)
T ss_pred CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 88899999864211 10 00 01 112333456788899999999999999999999999999998
No 152
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.60 E-value=6e-16 Score=173.44 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=117.4
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~v 111 (631)
+++++.++...+++++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|+
T Consensus 9 ~~l~~~~~~~~il~~vs~~i~~Ge---~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 85 (510)
T PRK09700 9 AGIGKSFGPVHALKSVNLTVYPGE---IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII 85 (510)
T ss_pred eeeEEEcCCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEE
Confidence 344455566679999999999999 99999999999999999999999 89999999986432 1358899
Q ss_pred cCCCCCCchhhHHHHHHHhhc------cc------cc-----------cc-cccccccccccCceeeeecCccEEEEeec
Q 006782 112 FDDPRLTDYDTLLENIRGLKE------GK------AV-----------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~------g~------~I-----------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi 167 (631)
||++.+++..++.+++..... +. .. .. ...+...+..++|+.+++..+++++.++.
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 165 (510)
T PRK09700 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK 165 (510)
T ss_pred eecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999998888899998864210 10 00 01 11233345678899999999999999999
Q ss_pred hhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCC
Q 006782 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (631)
Q Consensus 168 ~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s 206 (631)
+++.|||+..+|.. ....+..+.+++.+.|.+
T Consensus 166 lllLDEPt~~LD~~-------~~~~l~~~l~~l~~~g~t 197 (510)
T PRK09700 166 VIIMDEPTSSLTNK-------EVDYLFLIMNQLRKEGTA 197 (510)
T ss_pred EEEEeCCCCCCCHH-------HHHHHHHHHHHHHhCCCE
Confidence 99999999999983 333444445554444544
No 153
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.60 E-value=1.8e-15 Score=151.12 Aligned_cols=136 Identities=20% Similarity=0.171 Sum_probs=107.2
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----ccccccccCCCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDDPR 116 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----~~~i~~vfq~p~ 116 (631)
++++.++...+++++||.+.+|+ +++|+|+||||||||+++|+|.+ |+.|.|.++|.... .+.++|++|++.
T Consensus 16 ~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~ 92 (214)
T PRK13543 16 ALAFSRNEEPVFGPLDFHVDAGE---ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPG 92 (214)
T ss_pred eEEEecCCceeeecceEEECCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcc
Confidence 33444455679999999999999 89999999999999999999998 89999999997532 234789999988
Q ss_pred CCchhhHHHHHHHhhc--ccc-----------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 117 LTDYDTLLENIRGLKE--GKA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 117 l~d~~tl~e~L~~L~~--g~~-----------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+++..++.+++..... +.. +.. +..+......++|+.+++..+++++.++.+++.||++..+|.
T Consensus 93 ~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 170 (214)
T PRK13543 93 LKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170 (214)
T ss_pred cccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 8887789888854321 110 111 112334456778899999999999999999999999999997
No 154
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.60 E-value=7.2e-16 Score=177.06 Aligned_cols=159 Identities=15% Similarity=0.178 Sum_probs=116.4
Q ss_pred ceeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccc--------
Q 006782 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------- 103 (631)
Q Consensus 33 ~~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~-------- 103 (631)
++++..+...|....+...++++|||.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|...
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge---~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGE---TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 44555554444211224579999999999999 99999999999999999999999 7899998876311
Q ss_pred -------------cccccccccCCC--CCCchhhHHHHHHHhhc---c-------c-------ccccc----cccccccc
Q 006782 104 -------------SSRIIDGNFDDP--RLTDYDTLLENIRGLKE---G-------K-------AVQVP----IYDFKSSS 147 (631)
Q Consensus 104 -------------~~~~i~~vfq~p--~l~d~~tl~e~L~~L~~---g-------~-------~I~~P----vyd~~~~~ 147 (631)
....++++||+| .+++..++.+++..... + . .+.++ ..+...++
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 013589999998 56777899998864211 1 0 11222 13445577
Q ss_pred ccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHH
Q 006782 148 RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (631)
Q Consensus 148 rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~ 201 (631)
.++|+.+++..+++++.++.+++.|||+..+|.. ....+.++.+++.
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~-------~~~~l~~ll~~l~ 215 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT-------IQAQILQLIKVLQ 215 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHH-------HHHHHHHHHHHHH
Confidence 8899999999999999999999999999999983 3334445555543
No 155
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.60 E-value=1.2e-15 Score=156.19 Aligned_cols=137 Identities=18% Similarity=0.219 Sum_probs=106.6
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFD 113 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq 113 (631)
++++.++...+++++||.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++|++|
T Consensus 6 ~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (256)
T TIGR03873 6 RVSWSAGGRLIVDGVDVTAPPGS---LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQ 82 (256)
T ss_pred eEEEEECCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecc
Confidence 34445555679999999999999 99999999999999999999998 89999999996432 134789999
Q ss_pred CCCCCchhhHHHHHHHhhc------c----c---cc-------cc-cccccccccccCceeeeecCccEEEEeechhccc
Q 006782 114 DPRLTDYDTLLENIRGLKE------G----K---AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~------g----~---~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
++..+...++.+++..... + . .+ .. ...+......++|+.+++..++.++.++.+++.|
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 162 (256)
T TIGR03873 83 DSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLD 162 (256)
T ss_pred cCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9877777789998854210 0 0 00 00 1123334567788999999999999999999999
Q ss_pred cccCCCcEE
Q 006782 173 KLRPLIDLR 181 (631)
Q Consensus 173 El~~~lDlk 181 (631)
||+..+|..
T Consensus 163 EPt~~LD~~ 171 (256)
T TIGR03873 163 EPTNHLDVR 171 (256)
T ss_pred CccccCCHH
Confidence 999999973
No 156
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.60 E-value=8.9e-16 Score=153.80 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=106.7
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---ccccccccCCCCCC
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDPRLT 118 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---~~~i~~vfq~p~l~ 118 (631)
+++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|.+ |..|.|.+++.... .+.++++||++.++
T Consensus 6 v~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~ 82 (223)
T TIGR03740 6 LSKRFGKQTAVNNISLTVPKNS---VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLY 82 (223)
T ss_pred EEEEECCEEEEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCcc
Confidence 3344455679999999999999 89999999999999999999998 89999999987432 24678999999888
Q ss_pred chhhHHHHHHHhhc--cc---c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 119 DYDTLLENIRGLKE--GK---A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 119 d~~tl~e~L~~L~~--g~---~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+..++.+++..... +. . ... +..+......++|+.+++..++.++.++.+++.|||+..+|.
T Consensus 83 ~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 83 ENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred ccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 88899999864221 10 0 011 112333456778899999999999999999999999999998
No 157
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1e-15 Score=155.98 Aligned_cols=136 Identities=16% Similarity=0.204 Sum_probs=105.3
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ + +.|.|.++|.... .
T Consensus 7 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14240 7 KDLDLFYGDFQALKKINLDIEENQ---VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLR 83 (250)
T ss_pred EEEEEEECCceeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHh
Confidence 344444455679999999999999 89999999999999999999986 2 5899999986532 2
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--cc----ccc-----------c-----cccccccccccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AVQ-----------V-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g~----~I~-----------~-----Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
+.+++++|++.+++ .++.+++..... +. ... . ...+......++|+.+++..+++++
T Consensus 84 ~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14240 84 KRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALA 162 (250)
T ss_pred ccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence 35789999998887 789998864321 10 000 0 0112334567788999999999999
Q ss_pred EeechhccccccCCCcE
Q 006782 164 IEGIYALSEKLRPLIDL 180 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDl 180 (631)
.++.+++.|||+..+|.
T Consensus 163 ~~p~llllDEP~~~LD~ 179 (250)
T PRK14240 163 VEPEVLLMDEPTSALDP 179 (250)
T ss_pred cCCCEEEEeCCCccCCH
Confidence 99999999999999997
No 158
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.1e-15 Score=158.77 Aligned_cols=192 Identities=14% Similarity=0.208 Sum_probs=131.9
Q ss_pred eeEeecC-ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------ccccccc
Q 006782 42 TLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (631)
Q Consensus 42 ~ls~~~g-~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vf 112 (631)
++++.++ ...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|..... +.++++|
T Consensus 8 ~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 84 (277)
T PRK13652 8 DLCYSYSGSKEALNNINFIAPRNS---RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVF 84 (277)
T ss_pred EEEEEeCCCCceeeEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEe
Confidence 3334442 3458999999999999 99999999999999999999998 899999999975421 3578999
Q ss_pred CCCC-CCchhhHHHHHHHhhc--ccc--------------ccc-cccccccccccCceeeeecCccEEEEeechhccccc
Q 006782 113 DDPR-LTDYDTLLENIRGLKE--GKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (631)
Q Consensus 113 q~p~-l~d~~tl~e~L~~L~~--g~~--------------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl 174 (631)
|++. .+...++.+++..... +.. +.. +..+......++|+.+++..+++++.++.+++.|||
T Consensus 85 q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEP 164 (277)
T PRK13652 85 QNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP 164 (277)
T ss_pred cCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9974 2334688888864221 100 011 223444566788899999999999999999999999
Q ss_pred cCCCcEEEEEEcChhhHHHHHHHHHHHHh-CCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceee
Q 006782 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYI 253 (631)
Q Consensus 175 ~~~lDlkIfVdad~d~rLiRRI~RDv~er-G~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~i 253 (631)
+..+|.. ..+.+..+.+.+... |.++ +++.++.+.....++.+++
T Consensus 165 t~gLD~~-------~~~~l~~~l~~l~~~~g~tv---------------------------li~tH~~~~~~~~~drv~~ 210 (277)
T PRK13652 165 TAGLDPQ-------GVKELIDFLNDLPETYGMTV---------------------------IFSTHQLDLVPEMADYIYV 210 (277)
T ss_pred cccCCHH-------HHHHHHHHHHHHHHhcCCEE---------------------------EEEecCHHHHHHhCCEEEE
Confidence 9999983 233344444444332 4332 3333333332345677777
Q ss_pred eccCCcccHHHHHHHhc
Q 006782 254 LKSTRPVTVDEIKAVMS 270 (631)
Q Consensus 254 LKs~~~v~~~~Ik~vL~ 270 (631)
|+.++.+..+...+++.
T Consensus 211 l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 211 MDKGRIVAYGTVEEIFL 227 (277)
T ss_pred EECCeEEEECCHHHHhc
Confidence 77777665555555553
No 159
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.60 E-value=5.1e-16 Score=153.30 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=115.1
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccCCC
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDP 115 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq~p 115 (631)
+++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|+. |+.|.|.++|.... .+.+++++|++
T Consensus 7 l~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~ 83 (200)
T PRK13540 7 LDFDYHDQPLLQQISFHLPAGG---LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRS 83 (200)
T ss_pred EEEEeCCeeEEeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecccc
Confidence 3344445679999999999999 89999999999999999999998 89999999997532 13578899988
Q ss_pred CCCchhhHHHHHHHhhc--cc---------ccccc-ccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEE
Q 006782 116 RLTDYDTLLENIRGLKE--GK---------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~--g~---------~I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIf 183 (631)
.+++..++.+++..... .. ....+ ..+...+..++|+.+++..++.++.++.+++.|||+..+|..
T Consensus 84 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~-- 161 (200)
T PRK13540 84 GINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDEL-- 161 (200)
T ss_pred ccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH--
Confidence 88877899998864311 00 00111 123334567788999999999999999999999999999973
Q ss_pred EEcChhhHHHHHHHHHHHHhCCC
Q 006782 184 VTGGVHFDLVKRVFRDIQRVGQE 206 (631)
Q Consensus 184 Vdad~d~rLiRRI~RDv~erG~s 206 (631)
..+.+..+.++..+.|.+
T Consensus 162 -----~~~~l~~~l~~~~~~~~t 179 (200)
T PRK13540 162 -----SLLTIITKIQEHRAKGGA 179 (200)
T ss_pred -----HHHHHHHHHHHHHHcCCE
Confidence 333444445544444444
No 160
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=7.9e-16 Score=157.47 Aligned_cols=136 Identities=14% Similarity=0.165 Sum_probs=107.1
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFD 113 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq 113 (631)
++++.++...+++++||.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.++|+||
T Consensus 7 ~l~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (255)
T PRK11231 7 NLTVGYGTKRILNDLSLSLPTGK---ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQ 83 (255)
T ss_pred eEEEEECCEEEEeeeeeEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecc
Confidence 44455556779999999999999 89999999999999999999998 89999999986432 135889999
Q ss_pred CCCCCchhhHHHHHHHhhc------c---c----cc-------cc-cccccccccccCceeeeecCccEEEEeechhccc
Q 006782 114 DPRLTDYDTLLENIRGLKE------G---K----AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~------g---~----~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
++.+++..++.+++..... + . .+ .. ...+...+..++|+.+++..++.++.++.+++.|
T Consensus 84 ~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 163 (255)
T PRK11231 84 HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD 163 (255)
T ss_pred cCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9988877788888864210 0 0 00 01 1123334567888999999999999999999999
Q ss_pred cccCCCcE
Q 006782 173 KLRPLIDL 180 (631)
Q Consensus 173 El~~~lDl 180 (631)
||+..+|.
T Consensus 164 EP~~~LD~ 171 (255)
T PRK11231 164 EPTTYLDI 171 (255)
T ss_pred CCcccCCH
Confidence 99999997
No 161
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.5e-15 Score=153.38 Aligned_cols=128 Identities=16% Similarity=0.138 Sum_probs=103.7
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------ccccccccCCCCC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPRL 117 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~vfq~p~l 117 (631)
..+++++||.+++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++|+||++.+
T Consensus 22 ~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGE---MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 579999999999999 99999999999999999999998 89999999996432 1358899999998
Q ss_pred CchhhHHHHHHHhhc--c---c----c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 TDYDTLLENIRGLKE--G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~--g---~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++..++.+++..... + . . +.. ...+...+..++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 178 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 888899999865211 1 0 0 011 112333456778899999999999999999999999999997
No 162
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=8.3e-16 Score=159.49 Aligned_cols=127 Identities=15% Similarity=0.219 Sum_probs=100.1
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------ccccccccCCC--
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDP-- 115 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~vfq~p-- 115 (631)
..+++++||.+++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++|++|++
T Consensus 20 ~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGS---YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 358999999999999 89999999999999999999998 89999999996432 13578999987
Q ss_pred CCCchhhHHHHHHHhhc--c---cc-----------cccc--ccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 116 RLTDYDTLLENIRGLKE--G---KA-----------VQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~--g---~~-----------I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
.+++ .++.+++..... + .. .... ..+......++|+.+++..+++++.++.+++.|||+..
T Consensus 97 ~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~ 175 (280)
T PRK13649 97 QLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAG 175 (280)
T ss_pred hhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 3454 588888864211 1 00 1111 12333456788899999999999999999999999999
Q ss_pred CcE
Q 006782 178 IDL 180 (631)
Q Consensus 178 lDl 180 (631)
+|.
T Consensus 176 LD~ 178 (280)
T PRK13649 176 LDP 178 (280)
T ss_pred CCH
Confidence 997
No 163
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.3e-15 Score=156.94 Aligned_cols=136 Identities=17% Similarity=0.130 Sum_probs=107.0
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFD 113 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq 113 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.+++++|
T Consensus 16 ~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 92 (265)
T PRK10575 16 NVSFRVPGRTLLHPLSLTFPAGK---VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQ 92 (265)
T ss_pred eEEEEECCEEEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEecc
Confidence 34444455679999999999999 99999999999999999999998 89999999986432 135789999
Q ss_pred CCCCCchhhHHHHHHHhhc---c------c----c-------ccc-cccccccccccCceeeeecCccEEEEeechhccc
Q 006782 114 DPRLTDYDTLLENIRGLKE---G------K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~---g------~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
++.+++..++.+++..... + . . +.. ...+...+..++|+.+++..++.++.++.+++.|
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD 172 (265)
T PRK10575 93 QLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD 172 (265)
T ss_pred CCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9888888899998864210 0 0 0 001 1123334567888999999999999999999999
Q ss_pred cccCCCcE
Q 006782 173 KLRPLIDL 180 (631)
Q Consensus 173 El~~~lDl 180 (631)
||+..+|.
T Consensus 173 EPt~~LD~ 180 (265)
T PRK10575 173 EPTSALDI 180 (265)
T ss_pred CCcccCCH
Confidence 99999998
No 164
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=1.3e-15 Score=151.09 Aligned_cols=134 Identities=12% Similarity=-0.021 Sum_probs=107.9
Q ss_pred eccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC----CCceEEEECCcccc------ccc
Q 006782 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDS------SRI 107 (631)
Q Consensus 38 ~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll----p~~G~I~lDg~~~~------~~~ 107 (631)
++...|....+...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |+.|.|.++|.... .+.
T Consensus 8 ~~~~~~~~~~~~~~il~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 84 (202)
T cd03233 8 NISFTTGKGRSKIPILKDFSGVVKPGE---MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGE 84 (202)
T ss_pred ccEEEeccCCCCceeeeeEEEEECCCc---EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcce
Confidence 344444333346789999999999999 99999999999999999999997 36899999997532 235
Q ss_pred cccccCCCCCCchhhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+++++|++.+++..++.+++....... .+......++++.+++..+++++.++.+++.|||+..+|.
T Consensus 85 i~~~~q~~~~~~~~tv~~~l~~~~~~~------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~ 151 (202)
T cd03233 85 IIYVSEEDVHFPTLTVRETLDFALRCK------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDS 151 (202)
T ss_pred EEEEecccccCCCCcHHHHHhhhhhhc------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCH
Confidence 789999998888889999987533211 2333456778899999999999999999999999999997
No 165
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.1e-15 Score=156.61 Aligned_cols=193 Identities=13% Similarity=0.160 Sum_probs=132.5
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|.+ | ..|.|.++|.... .
T Consensus 16 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 92 (259)
T PRK14274 16 NGMNLWYGQHHALKNINLSIPENE---VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELR 92 (259)
T ss_pred eeEEEEECCeeeEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHh
Confidence 334444555679999999999999 89999999999999999999997 2 4899999997532 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--c----c----cc-------cc-----cccccccccccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G----K----AV-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g----~----~I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
..++|+||++.+++. ++.+++..... + . .+ .. ...+......++|+.+++..+++++
T Consensus 93 ~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~ 171 (259)
T PRK14274 93 KNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA 171 (259)
T ss_pred hceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 357899999988875 89998864221 1 0 00 00 0122334557788999999999999
Q ss_pred EeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
.++.+++.|||+..+|.. ....+.++.+.+.. + .+=+++.++.+.
T Consensus 172 ~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~-~---------------------------~tiiivtH~~~~ 216 (259)
T PRK14274 172 TNPDVLLMDEPTSALDPV-------STRKIEELILKLKE-K---------------------------YTIVIVTHNMQQ 216 (259)
T ss_pred cCCCEEEEcCCcccCCHH-------HHHHHHHHHHHHhc-C---------------------------CEEEEEEcCHHH
Confidence 999999999999999983 12222222222211 1 123444455444
Q ss_pred CCCCCCceeeeccCCcccHHHHHHHhccc
Q 006782 244 FTGFQNPTYILKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 244 ~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~ 272 (631)
....++.+++|+.++.+..+...+++.++
T Consensus 217 ~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 245 (259)
T PRK14274 217 AARVSDQTAFFYMGELVECNDTNKMFSNP 245 (259)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHhhCC
Confidence 34567778888887766555555555543
No 166
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.60 E-value=7.9e-16 Score=157.71 Aligned_cols=137 Identities=16% Similarity=0.103 Sum_probs=102.0
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcc-----cc----------
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-----DS---------- 104 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~-----~~---------- 104 (631)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.. ..
T Consensus 10 ~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~ 86 (258)
T PRK11701 10 RGLTKLYGPRKGCRDVSFDLYPGE---VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRL 86 (258)
T ss_pred eeeEEEcCCceeeeeeeEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHH
Confidence 344444445679999999999999 99999999999999999999998 899999999965 22
Q ss_pred -ccccccccCCCC--CCchhhHHHHHHHhh--cc---------------ccccc--cccccccccccCceeeeecCccEE
Q 006782 105 -SRIIDGNFDDPR--LTDYDTLLENIRGLK--EG---------------KAVQV--PIYDFKSSSRIGYRTLEVPSSRIV 162 (631)
Q Consensus 105 -~~~i~~vfq~p~--l~d~~tl~e~L~~L~--~g---------------~~I~~--Pvyd~~~~~rs~~~~~~v~~a~VL 162 (631)
.+.++|++|++. ++...++.+++.... .+ ..... ...+......++|+.+++..++.+
T Consensus 87 ~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral 166 (258)
T PRK11701 87 LRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNL 166 (258)
T ss_pred hhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHH
Confidence 124789999874 334345555543210 00 00111 123344566788899999999999
Q ss_pred EEeechhccccccCCCcE
Q 006782 163 IIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 163 IvEGi~lL~dEl~~~lDl 180 (631)
+.++.+++.|||+..+|.
T Consensus 167 ~~~p~llllDEPt~~LD~ 184 (258)
T PRK11701 167 VTHPRLVFMDEPTGGLDV 184 (258)
T ss_pred hcCCCEEEEcCCcccCCH
Confidence 999999999999999997
No 167
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.1e-15 Score=155.81 Aligned_cols=143 Identities=16% Similarity=0.133 Sum_probs=108.4
Q ss_pred eeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC------CCceEEEECCcccc----
Q 006782 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---- 104 (631)
Q Consensus 35 ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll------p~~G~I~lDg~~~~---- 104 (631)
++....+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|+. |..|.|.++|....
T Consensus 3 ~~~~~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 3 EIHASVKNLNLWYGSKQILFDINLDIYKRE---VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred ceEEEeeeEEEEECCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 344444566666666789999999999999 89999999999999999999996 25899999986431
Q ss_pred -----ccccccccCCCCCCchhhHHHHHHHhh--ccc-----c-----------cccc-----ccccccccccCceeeee
Q 006782 105 -----SRIIDGNFDDPRLTDYDTLLENIRGLK--EGK-----A-----------VQVP-----IYDFKSSSRIGYRTLEV 156 (631)
Q Consensus 105 -----~~~i~~vfq~p~l~d~~tl~e~L~~L~--~g~-----~-----------I~~P-----vyd~~~~~rs~~~~~~v 156 (631)
.+.++|+||++.+++. ++.+++.... .+. . +... ..+......++|+.+++
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 2357899999988875 8888876421 110 0 0000 11223345677889999
Q ss_pred cCccEEEEeechhccccccCCCcEE
Q 006782 157 PSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 157 ~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
..++.++.++.+++.|||+..+|..
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~ 183 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPV 183 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHH
Confidence 9999999999999999999999973
No 168
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.60 E-value=1.3e-15 Score=150.22 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=100.5
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC---CCceEEEECCcccc----ccccccccCCCCCCchhh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDS----SRIIDGNFDDPRLTDYDT 122 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll---p~~G~I~lDg~~~~----~~~i~~vfq~p~l~d~~t 122 (631)
..++++++|.+++|+ +++|+||||||||||+++|++++ |..|.|.+||.... .+.++++||++.+++..+
T Consensus 22 ~~~l~~~~~~i~~Ge---~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGE---LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 569999999999999 89999999999999999999997 47899999997542 245889999999888889
Q ss_pred HHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 123 LLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 123 l~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+.+++.....- ...++|+.+++..++.++.++.+++.|||+..+|.
T Consensus 99 ~~~~i~~~~~~------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~ 144 (194)
T cd03213 99 VRETLMFAAKL------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS 144 (194)
T ss_pred HHHHHHHHHHh------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence 99998643210 15677888999999999999999999999999997
No 169
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.4e-15 Score=155.30 Aligned_cols=193 Identities=13% Similarity=0.164 Sum_probs=132.0
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC------CceEEEECCcccc---------cc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS---------SR 106 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp------~~G~I~lDg~~~~---------~~ 106 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|+++ +.|.|.++|.... .+
T Consensus 9 nl~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~ 85 (252)
T PRK14256 9 QLNVHFGKNHAVKDVSMDFPENS---VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRR 85 (252)
T ss_pred EEEEEeCCeeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhc
Confidence 33444455679999999999999 899999999999999999999972 4799999997532 23
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc--c----c----cc-------cc-----cccccccccccCceeeeecCccEEEE
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE--G----K----AV-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--g----~----~I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
.++++||++.+++..++.+++..... + . .+ .. ...+......++|+.+++..+++++.
T Consensus 86 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~ 165 (252)
T PRK14256 86 RVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV 165 (252)
T ss_pred cEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc
Confidence 57899999999988899998864210 1 0 00 00 01122234577789999999999999
Q ss_pred eechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCC
Q 006782 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (631)
Q Consensus 165 EGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (631)
++.+++.|||+..+|.. ..+.+.++.+.+.. +. +=+++.++.+..
T Consensus 166 ~p~llllDEP~~gLD~~-------~~~~l~~~l~~~~~-~~---------------------------tiiivsH~~~~~ 210 (252)
T PRK14256 166 KPEVILMDEPASALDPI-------STLKIEELIEELKE-KY---------------------------TIIIVTHNMQQA 210 (252)
T ss_pred CCCEEEEcCCcccCCHH-------HHHHHHHHHHHHHh-CC---------------------------cEEEEECCHHHH
Confidence 99999999999999983 22223333333321 11 223333444333
Q ss_pred CCCCCceeeeccCCcccHHHHHHHhccc
Q 006782 245 TGFQNPTYILKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 245 ~~~~n~v~iLKs~~~v~~~~Ik~vL~~~ 272 (631)
...|+.+++++.++.+..+...+++..+
T Consensus 211 ~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14256 211 ARVSDYTAFFYMGDLVECGETKKIFTTP 238 (252)
T ss_pred HhhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 4567777777777665555555555443
No 170
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=3.4e-16 Score=153.51 Aligned_cols=165 Identities=20% Similarity=0.173 Sum_probs=123.1
Q ss_pred EeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc--cccccccCCCCCCch
Q 006782 44 SFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--RIIDGNFDDPRLTDY 120 (631)
Q Consensus 44 s~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~--~~i~~vfq~p~l~d~ 120 (631)
+|+...+.+++++|+.+.+|+ .+.+.||||||||||++.++|+. |..|.|.+++..... ..-+.+||++.+++|
T Consensus 12 ~y~g~~~~~le~vsL~ia~ge---~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPW 88 (259)
T COG4525 12 SYEGKPRSALEDVSLTIASGE---LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPW 88 (259)
T ss_pred ecCCcchhhhhccceeecCCC---EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchh
Confidence 344444559999999999999 89999999999999999999999 999999999985543 356889999999999
Q ss_pred hhHHHHHHHhhcccc----------------cccccc-ccccccccCceeeeecCccEEEEeechhccccccCCCcEEEE
Q 006782 121 DTLLENIRGLKEGKA----------------VQVPIY-DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (631)
Q Consensus 121 ~tl~e~L~~L~~g~~----------------I~~Pvy-d~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIf 183 (631)
.++.+|+++-..-.. +....+ ++...+.++++++++..++.+.+|+.++|.||+...+|.-
T Consensus 89 l~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~-- 166 (259)
T COG4525 89 LNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDAL-- 166 (259)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHH--
Confidence 999999987443211 112222 2224567899999999999999999999999999999862
Q ss_pred EEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q 006782 184 VTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (631)
Q Consensus 184 Vdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~ 217 (631)
.-.++-.-+..-+.+.|...--|+|.+.+.
T Consensus 167 ----tRe~mQelLldlw~~tgk~~lliTH~ieEA 196 (259)
T COG4525 167 ----TREQMQELLLDLWQETGKQVLLITHDIEEA 196 (259)
T ss_pred ----HHHHHHHHHHHHHHHhCCeEEEEeccHHHH
Confidence 111122222333445676665556655444
No 171
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=9.8e-16 Score=156.06 Aligned_cols=136 Identities=15% Similarity=0.162 Sum_probs=105.2
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------cc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------SR 106 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~~ 106 (631)
++++.++...++++++|.+++|+ +++|+|+||||||||+++|+|++ | ..|.|.++|.... .+
T Consensus 8 ~l~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~ 84 (250)
T PRK14262 8 NFSAYYGEKKAVKNVTMKIFKNQ---ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRK 84 (250)
T ss_pred eeEEEeCCceeEeeeeEeecCCC---EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhh
Confidence 33444455679999999999999 89999999999999999999987 3 7899999996432 24
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc--cc----ccc-----------c-----cccccccccccCceeeeecCccEEEE
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GK----AVQ-----------V-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--g~----~I~-----------~-----Pvyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
.++++||++.+++ .++.+++..... +. ... . ...+......++|+.+++..+++++.
T Consensus 85 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~ 163 (250)
T PRK14262 85 KVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV 163 (250)
T ss_pred hEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC
Confidence 5889999999887 789998864221 10 000 0 01233345677788999999999999
Q ss_pred eechhccccccCCCcEE
Q 006782 165 EGIYALSEKLRPLIDLR 181 (631)
Q Consensus 165 EGi~lL~dEl~~~lDlk 181 (631)
++.+++.|||+..+|..
T Consensus 164 ~p~llllDEP~~~LD~~ 180 (250)
T PRK14262 164 EPEVILLDEPTSALDPI 180 (250)
T ss_pred CCCEEEEeCCccccCHH
Confidence 99999999999999973
No 172
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=8.1e-16 Score=157.95 Aligned_cols=135 Identities=20% Similarity=0.187 Sum_probs=105.1
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC------CCceEEEECCcccc---------cc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---------SR 106 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll------p~~G~I~lDg~~~~---------~~ 106 (631)
++++.++...+++++||.+++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+
T Consensus 18 ~l~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~ 94 (260)
T PRK10744 18 NLNFYYGKFHALKNINLDIAKNQ---VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRA 94 (260)
T ss_pred EEEEEeCCeEEeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhc
Confidence 34444455679999999999999 99999999999999999999997 26899999986532 13
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc---c-------ccc-------cc-----cccccccccccCceeeeecCccEEEE
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE---G-------KAV-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~---g-------~~I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
.++|+||++.+++ .++.+++..... + ..+ .. ...+......++|+.+++..+++++.
T Consensus 95 ~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 173 (260)
T PRK10744 95 KVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI 173 (260)
T ss_pred ceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC
Confidence 5889999998887 789998864221 1 000 00 01223345677889999999999999
Q ss_pred eechhccccccCCCcE
Q 006782 165 EGIYALSEKLRPLIDL 180 (631)
Q Consensus 165 EGi~lL~dEl~~~lDl 180 (631)
++.+++.||++..+|.
T Consensus 174 ~p~lllLDEPt~~LD~ 189 (260)
T PRK10744 174 RPEVLLLDEPCSALDP 189 (260)
T ss_pred CCCEEEEcCCCccCCH
Confidence 9999999999999997
No 173
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=8.6e-16 Score=152.48 Aligned_cols=135 Identities=20% Similarity=0.153 Sum_probs=106.8
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDD 114 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq~ 114 (631)
.+++.++...+++++||.+++| ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.+++++|+
T Consensus 5 ~~~~~~~~~~~l~~vs~~i~~g----~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 80 (211)
T cd03264 5 NLTKRYGKKRALDGVSLTLGPG----MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQE 80 (211)
T ss_pred EEEEEECCEEEEcceeEEEcCC----cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCC
Confidence 3445555567999999999985 59999999999999999999998 89999999997532 2457899999
Q ss_pred CCCCchhhHHHHHHHhhc--c---c-----------cccc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 115 PRLTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--g---~-----------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+.+|+..++.+++..... + . .+.. +..+......++|+.+++..+++++.++.+++.|||+..
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 160 (211)
T cd03264 81 FGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAG 160 (211)
T ss_pred CcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999888899998864211 1 0 0111 122344456788899999999999999999999999999
Q ss_pred CcE
Q 006782 178 IDL 180 (631)
Q Consensus 178 lDl 180 (631)
+|.
T Consensus 161 LD~ 163 (211)
T cd03264 161 LDP 163 (211)
T ss_pred CCH
Confidence 997
No 174
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=9.9e-16 Score=155.93 Aligned_cols=135 Identities=16% Similarity=0.190 Sum_probs=105.3
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC----CCceEEEECCcccc-------cccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDS-------SRIIDG 110 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll----p~~G~I~lDg~~~~-------~~~i~~ 110 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.++|
T Consensus 7 ~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 83 (246)
T PRK14269 7 NLNLFYGKKQALFDINMQIEQNK---ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGM 83 (246)
T ss_pred eeEEEECCEeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEE
Confidence 34445555679999999999999 89999999999999999999986 47999999997532 235899
Q ss_pred ccCCCCCCchhhHHHHHHHhhc--c-----c-----------ccccc-----ccccccccccCceeeeecCccEEEEeec
Q 006782 111 NFDDPRLTDYDTLLENIRGLKE--G-----K-----------AVQVP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~--g-----~-----------~I~~P-----vyd~~~~~rs~~~~~~v~~a~VLIvEGi 167 (631)
+||++.+|+ .++.+++..... + . .+..+ ..+......++|+.+++..+++++.++.
T Consensus 84 ~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 162 (246)
T PRK14269 84 VFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPK 162 (246)
T ss_pred EecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999887 599999854211 0 0 00111 1122334567789999999999999999
Q ss_pred hhccccccCCCcE
Q 006782 168 YALSEKLRPLIDL 180 (631)
Q Consensus 168 ~lL~dEl~~~lDl 180 (631)
+++.|||+..+|.
T Consensus 163 lllLDEP~~~LD~ 175 (246)
T PRK14269 163 LLLLDEPTSALDP 175 (246)
T ss_pred EEEEcCCcccCCH
Confidence 9999999999997
No 175
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.1e-15 Score=157.60 Aligned_cols=191 Identities=16% Similarity=0.195 Sum_probs=130.1
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC------CCceEEEECCcccc---------cc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---------SR 106 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll------p~~G~I~lDg~~~~---------~~ 106 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+
T Consensus 26 ~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 102 (268)
T PRK14248 26 DLSIYYGEKRAVNDISMDIEKHA---VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRR 102 (268)
T ss_pred EEEEEeCCceeeeceEEEEcCCC---EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhc
Confidence 34444455679999999999999 89999999999999999999974 37899999986532 23
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc--cc---c-----cc-------c-----cccccccccccCceeeeecCccEEEE
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GK---A-----VQ-------V-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--g~---~-----I~-------~-----Pvyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
.++|++|++.+++. ++.+++..... +. . +. . ...+...+..++|+.+++..+++++.
T Consensus 103 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~ 181 (268)
T PRK14248 103 EIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM 181 (268)
T ss_pred cEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC
Confidence 58899999988874 88888864211 10 0 00 0 11223345677889999999999999
Q ss_pred eechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCC
Q 006782 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (631)
Q Consensus 165 EGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (631)
++.+++.|||+..+|.. ....+..+.+++.. +. +=+++.++.+..
T Consensus 182 ~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~-~~---------------------------tiii~tH~~~~~ 226 (268)
T PRK14248 182 KPAVLLLDEPASALDPI-------SNAKIEELITELKE-EY---------------------------SIIIVTHNMQQA 226 (268)
T ss_pred CCCEEEEcCCCcccCHH-------HHHHHHHHHHHHhc-CC---------------------------EEEEEEeCHHHH
Confidence 99999999999999973 22222333333211 11 223333444333
Q ss_pred CCCCCceeeeccCCcccHHHHHHHhcc
Q 006782 245 TGFQNPTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 245 ~~~~n~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
...|+.+++|+.+..+..+...+++..
T Consensus 227 ~~~~d~v~~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 227 LRVSDRTAFFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 456777778887766555555555543
No 176
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=9.9e-16 Score=162.69 Aligned_cols=184 Identities=13% Similarity=0.155 Sum_probs=128.3
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------------------c
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------------------S 105 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------------------~ 105 (631)
..+|++++|.+++|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .
T Consensus 39 ~~~L~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNK---IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 359999999999999 99999999999999999999999 89999999985321 1
Q ss_pred cccccccCCCC--CCchhhHHHHHHHhhc--cc--------------ccccc--ccccccccccCceeeeecCccEEEEe
Q 006782 106 RIIDGNFDDPR--LTDYDTLLENIRGLKE--GK--------------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (631)
Q Consensus 106 ~~i~~vfq~p~--l~d~~tl~e~L~~L~~--g~--------------~I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvE 165 (631)
+.++++||+|. +|+ .++.+++..... +. .+..+ ..+......++|+.+++..+++++.+
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~ 194 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQ 194 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 35789999983 554 488988854211 10 01111 12333456788999999999999999
Q ss_pred echhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCC
Q 006782 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFT 245 (631)
Q Consensus 166 Gi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~ 245 (631)
+.+++.||++..+|.. ..+.+..+.+++.++|.|+ +++.++.+...
T Consensus 195 p~iLLLDEPtsgLD~~-------~~~~l~~~L~~l~~~g~Ti---------------------------iivtHd~~~~~ 240 (320)
T PRK13631 195 PEILIFDEPTAGLDPK-------GEHEMMQLILDAKANNKTV---------------------------FVITHTMEHVL 240 (320)
T ss_pred CCEEEEECCccCCCHH-------HHHHHHHHHHHHHHCCCEE---------------------------EEEecCHHHHH
Confidence 9999999999999983 3333444444443334443 33333333223
Q ss_pred CCCCceeeeccCCcccHHHHHHHhcc
Q 006782 246 GFQNPTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 246 ~~~n~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
..++.+++|+.+..+..+...+++..
T Consensus 241 ~~adri~vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 241 EVADEVIVMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 45666777777766655555555543
No 177
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.59 E-value=4.3e-16 Score=165.97 Aligned_cols=196 Identities=18% Similarity=0.241 Sum_probs=149.7
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc----------cccccccCCCC--
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS----------RIIDGNFDDPR-- 116 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~----------~~i~~vfq~p~-- 116 (631)
...++++|||.+.+|+ .+||+|.||||||||..+|..+++..|.|.++|..... +.+..+||+|.
T Consensus 299 ~~~AVd~isl~L~~gq---TlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygS 375 (534)
T COG4172 299 HLRAVDGISLTLRRGQ---TLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGS 375 (534)
T ss_pred heEEeccceeEecCCC---eEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCC
Confidence 4569999999999999 89999999999999999999999777999999975432 45778999995
Q ss_pred CCchhhHHHHHHHhhc-c-----------------ccc--cccccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 117 LTDYDTLLENIRGLKE-G-----------------KAV--QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 117 l~d~~tl~e~L~~L~~-g-----------------~~I--~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
+-+.+++.+.+.+-.. . ..+ .....+...|+.+||++++++.++++|+++.++++||+++
T Consensus 376 LsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTS 455 (534)
T COG4172 376 LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTS 455 (534)
T ss_pred CCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCch
Confidence 5677888888765221 0 011 1223455568899999999999999999999999999999
Q ss_pred CCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 177 ~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
.+|..|-- .-+.|+|.++++ +|.+ =+.|.+|....+..|+.|.|||.
T Consensus 456 ALD~SVQa---Qvv~LLr~LQ~k---~~Ls---------------------------YLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 456 ALDRSVQA---QVLDLLRDLQQK---HGLS---------------------------YLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred HhhHHHHH---HHHHHHHHHHHH---hCCe---------------------------EEEEeccHHHHHHhhceEEEEeC
Confidence 99985211 122344444333 2322 23455555556889999999999
Q ss_pred CCcccHHHHHHHhcccccccccce
Q 006782 257 TRPVTVDEIKAVMSKEHTETTEET 280 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~~~~~~~~~~f 280 (631)
++.++.+...++|.++..+.++..
T Consensus 503 GkiVE~G~~~~if~~P~~~YT~~L 526 (534)
T COG4172 503 GKIVEQGPTEAVFANPQHEYTRAL 526 (534)
T ss_pred CEEeeeCCHHHHhcCCCcHHHHHH
Confidence 999999999999999877666543
No 178
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.3e-15 Score=156.86 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=107.0
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFD 113 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq 113 (631)
++++.++...+++++||.+.+|+ ++||+|+||||||||+++|+|.+ |+.|.|.++|.... ...++|+||
T Consensus 12 ~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 88 (265)
T PRK10253 12 QLTLGYGKYTVAENLTVEIPDGH---FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQ 88 (265)
T ss_pred EEEEEECCEEEeeecceEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeec
Confidence 34444455679999999999999 89999999999999999999999 88999999987432 135789999
Q ss_pred CCCCCchhhHHHHHHHhhcc---------c----cc-------cc-cccccccccccCceeeeecCccEEEEeechhccc
Q 006782 114 DPRLTDYDTLLENIRGLKEG---------K----AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~g---------~----~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
++.+++..++.+++...... + .+ .. ...+......++|+.+++..++.++..+.+++.|
T Consensus 89 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 168 (265)
T PRK10253 89 NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD 168 (265)
T ss_pred cCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 99888878888888642100 0 00 01 1123334567788999999999999999999999
Q ss_pred cccCCCcE
Q 006782 173 KLRPLIDL 180 (631)
Q Consensus 173 El~~~lDl 180 (631)
||+..+|.
T Consensus 169 EPt~gLD~ 176 (265)
T PRK10253 169 EPTTWLDI 176 (265)
T ss_pred CccccCCH
Confidence 99999997
No 179
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.59 E-value=1.5e-15 Score=155.92 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=106.6
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEEECCcccc------------c
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS------------S 105 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~---~G~I~lDg~~~~------------~ 105 (631)
++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+|.+ |+ .|.|.++|.... .
T Consensus 9 nl~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 85 (262)
T PRK09984 9 KLAKTFNQHQALHAVDLNIHHGE---MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSR 85 (262)
T ss_pred eEEEEeCCeEEEecceEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHH
Confidence 33444455679999999999999 99999999999999999999998 54 499999996432 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhcc-------------c----c-------ccc-cccccccccccCceeeeecCcc
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKEG-------------K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSR 160 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~g-------------~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~ 160 (631)
+.++|+||++.+++..++.+++...... . . +.. ...+...+..++|+.+++..++
T Consensus 86 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 165 (262)
T PRK09984 86 ANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIAR 165 (262)
T ss_pred hheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHH
Confidence 3478999999988888999998642110 0 0 011 1223344567888999999999
Q ss_pred EEEEeechhccccccCCCcE
Q 006782 161 IVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 161 VLIvEGi~lL~dEl~~~lDl 180 (631)
+++.++.+++.|||+..+|.
T Consensus 166 al~~~p~llllDEPt~~LD~ 185 (262)
T PRK09984 166 ALMQQAKVILADEPIASLDP 185 (262)
T ss_pred HHhcCCCEEEecCccccCCH
Confidence 99999999999999999998
No 180
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.59 E-value=1.3e-14 Score=149.08 Aligned_cols=163 Identities=20% Similarity=0.316 Sum_probs=127.9
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHHhC------CCceEEEECCcccccc-----ccccccCCCCCCchhhHHHHHH
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDSSR-----IIDGNFDDPRLTDYDTLLENIR 128 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll------p~~G~I~lDg~~~~~~-----~i~~vfq~p~l~d~~tl~e~L~ 128 (631)
...++.|+||||+|+.|+||||+++.|..++ |.+-.|.+||+..... .+----..|..||...+.+.+.
T Consensus 76 ~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~ 155 (283)
T COG1072 76 TNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLS 155 (283)
T ss_pred cCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHH
Confidence 3456779999999999999999999999886 2467899999965431 1111223588899999999999
Q ss_pred Hhhcccc-ccccccccccccccCceeeeecCccEEEEeechhcccc-----ccCCCcEEEEEEcChhhHHHHHHHHHHHH
Q 006782 129 GLKEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-----LRPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (631)
Q Consensus 129 ~L~~g~~-I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dE-----l~~~lDlkIfVdad~d~rLiRRI~RDv~e 202 (631)
.++.+.+ +..|+|++.++...+++...+...++||+||+++|.++ +.+.+|+.||||++.+.- .+|+..+...
T Consensus 156 ~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~l-e~wyi~Rfl~ 234 (283)
T COG1072 156 DVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELL-EERYIERFLK 234 (283)
T ss_pred HHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHH-HHHHHHHHHh
Confidence 9997765 99999999999999888888999999999999999853 668999999999998764 4444433444
Q ss_pred hCCCHHHHHHHHHhccccchh
Q 006782 203 VGQEPEEIIHQISETVYPMYK 223 (631)
Q Consensus 203 rG~s~e~Vi~q~~~~v~P~~~ 223 (631)
.|.+.....+.|..+..|+-+
T Consensus 235 ~g~~a~~~~~~~~~~~~~~~~ 255 (283)
T COG1072 235 FGLTAFEDPASYFHNYAPLSE 255 (283)
T ss_pred cccchhhChhhHhhccCcchH
Confidence 577777777777666555543
No 181
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.3e-15 Score=155.06 Aligned_cols=190 Identities=14% Similarity=0.167 Sum_probs=131.0
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc--------ccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------SRI 107 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~--------~~~ 107 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ | +.|.|.++|.... .+.
T Consensus 8 ~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~ 84 (249)
T PRK14253 8 NLDLFYGENQALKSINLPIPARQ---VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIK 84 (249)
T ss_pred ccEEEECCeeeeecceEEecCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhh
Confidence 33444455679999999999999 99999999999999999999998 4 4899999986432 135
Q ss_pred cccccCCCCCCchhhHHHHHHHhhc--c---c-cc-----------cc-----cccccccccccCceeeeecCccEEEEe
Q 006782 108 IDGNFDDPRLTDYDTLLENIRGLKE--G---K-AV-----------QV-----PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (631)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~~--g---~-~I-----------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIvE 165 (631)
++|+||++.+++ .++.+++..... + . .. .. ...+...+..++|+.+++..++.++.+
T Consensus 85 i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (249)
T PRK14253 85 VGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAME 163 (249)
T ss_pred eeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcC
Confidence 789999999887 788888864211 1 0 00 00 112233456778899999999999999
Q ss_pred echhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCC
Q 006782 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFT 245 (631)
Q Consensus 166 Gi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~ 245 (631)
+.+++.|||+..+|.. ....+..+.+++.+ + .+=+++.++.+...
T Consensus 164 p~llllDEP~~~LD~~-------~~~~l~~~l~~~~~-~---------------------------~tii~~sh~~~~~~ 208 (249)
T PRK14253 164 PDVILMDEPTSALDPI-------ATHKIEELMEELKK-N---------------------------YTIVIVTHSMQQAR 208 (249)
T ss_pred CCEEEEeCCCccCCHH-------HHHHHHHHHHHHhc-C---------------------------CeEEEEecCHHHHH
Confidence 9999999999999973 22223333333221 1 12344444444435
Q ss_pred CCCCceeeeccCCcccHHHHHHHhc
Q 006782 246 GFQNPTYILKSTRPVTVDEIKAVMS 270 (631)
Q Consensus 246 ~~~n~v~iLKs~~~v~~~~Ik~vL~ 270 (631)
..++++++|+.+..+..+...+++.
T Consensus 209 ~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 209 RISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHHc
Confidence 5678888888877665444444443
No 182
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.59 E-value=1.5e-15 Score=169.95 Aligned_cols=155 Identities=15% Similarity=0.096 Sum_probs=116.6
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------cccccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNF 112 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vf 112 (631)
++++.++...++++++|.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++++|
T Consensus 9 ~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 85 (501)
T PRK10762 9 GIDKAFPGVKALSGAALNVYPGR---VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIH 85 (501)
T ss_pred eeEEEeCCeEEeeeeeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEE
Confidence 34444455679999999999999 99999999999999999999999 89999999986432 23588999
Q ss_pred CCCCCCchhhHHHHHHHhhc-----c----c----cc-------ccc-ccccccccccCceeeeecCccEEEEeechhcc
Q 006782 113 DDPRLTDYDTLLENIRGLKE-----G----K----AV-------QVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~-----g----~----~I-------~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~ 171 (631)
|++.+++..++.+++..... + . .+ ..+ ..+...+..++|+.+++..+++++.++.+++.
T Consensus 86 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 165 (501)
T PRK10762 86 QELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIM 165 (501)
T ss_pred cchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999888899999864211 0 0 00 011 12333457788999999999999999999999
Q ss_pred ccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCC
Q 006782 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (631)
Q Consensus 172 dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s 206 (631)
|||++.+|.. ....+.++.+.+...|.+
T Consensus 166 DEPt~~LD~~-------~~~~l~~~l~~l~~~~~t 193 (501)
T PRK10762 166 DEPTDALTDT-------ETESLFRVIRELKSQGRG 193 (501)
T ss_pred eCCcCCCCHH-------HHHHHHHHHHHHHHCCCE
Confidence 9999999973 333344444444444443
No 183
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.1e-15 Score=175.54 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=139.7
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------ccccccccCCC--C
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDP--R 116 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~vfq~p--~ 116 (631)
..++++|||.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.++|.... .+.++|+||++ .
T Consensus 337 ~~~l~~vs~~i~~Ge---~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~ 413 (623)
T PRK10261 337 VHAVEKVSFDLWPGE---TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413 (623)
T ss_pred eEEEeeeEeEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhh
Confidence 569999999999999 99999999999999999999999 89999999986431 23589999998 4
Q ss_pred CCchhhHHHHHHHhh--cc----c-----------ccccc--ccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 117 LTDYDTLLENIRGLK--EG----K-----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 117 l~d~~tl~e~L~~L~--~g----~-----------~I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+++..++.+++.... .+ . .+..+ ..+...++.++|+++++..+++++.++.+++.|||+..
T Consensus 414 l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~ 493 (623)
T PRK10261 414 LDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSA 493 (623)
T ss_pred cCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 777788988886421 01 0 01121 23445578899999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
+|.. ....+..+.+++.+ .|.+ =++|.++.+....+++.+++|+.
T Consensus 494 LD~~-------~~~~i~~ll~~l~~~~g~t---------------------------vi~isHdl~~v~~~~dri~vl~~ 539 (623)
T PRK10261 494 LDVS-------IRGQIINLLLDLQRDFGIA---------------------------YLFISHDMAVVERISHRVAVMYL 539 (623)
T ss_pred CCHH-------HHHHHHHHHHHHHHhcCCE---------------------------EEEEeCCHHHHHHhCCEEEEEEC
Confidence 9983 23333444444332 1332 34455555554567788888888
Q ss_pred CCcccHHHHHHHhcccccccccc
Q 006782 257 TRPVTVDEIKAVMSKEHTETTEE 279 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~~~~~~~~~~ 279 (631)
++.+..+...+++..+....+..
T Consensus 540 G~iv~~g~~~~i~~~p~~~~~~~ 562 (623)
T PRK10261 540 GQIVEIGPRRAVFENPQHPYTRK 562 (623)
T ss_pred CEEEEecCHHHHhcCCCCHHHHH
Confidence 87766666777766543333333
No 184
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.7e-15 Score=154.52 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=104.9
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CC-----ceEEEECCcccc---------cc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS---------SR 106 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~-----~G~I~lDg~~~~---------~~ 106 (631)
.+++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |. .|.|.++|.... .+
T Consensus 9 ~l~~~~~~~~il~~~s~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~ 85 (251)
T PRK14249 9 GVNFFYHKHQVLKNINMDFPERQ---ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRK 85 (251)
T ss_pred EEEEEECCeeEecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhc
Confidence 34444455679999999999999 89999999999999999999998 54 599999986432 24
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc--ccc--------c-------cc-----cccccccccccCceeeeecCccEEEE
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GKA--------V-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--g~~--------I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
.++|+||++.+++. ++.+++..... +.. + .. ...+......++|+.+++..+++++.
T Consensus 86 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 164 (251)
T PRK14249 86 RVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI 164 (251)
T ss_pred eEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 58899999998875 89998864221 100 0 00 11233344577889999999999999
Q ss_pred eechhccccccCCCcE
Q 006782 165 EGIYALSEKLRPLIDL 180 (631)
Q Consensus 165 EGi~lL~dEl~~~lDl 180 (631)
++.+++.|||+..+|.
T Consensus 165 ~p~lllLDEPt~~LD~ 180 (251)
T PRK14249 165 EPEVILMDEPCSALDP 180 (251)
T ss_pred CCCEEEEeCCCccCCH
Confidence 9999999999999997
No 185
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.3e-15 Score=155.42 Aligned_cols=129 Identities=13% Similarity=0.177 Sum_probs=100.9
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCC-CCch
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPR-LTDY 120 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~-l~d~ 120 (631)
..+++++||.+++|+ ++||+||||||||||+++|+|++ |..|.|.++|.... .+.+++++|++. .++.
T Consensus 22 ~~~l~~isl~i~~Ge---~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (269)
T PRK13648 22 SFTLKDVSFNIPKGQ---WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVG 98 (269)
T ss_pred CcceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhccc
Confidence 358999999999999 99999999999999999999999 89999999997542 135789999985 5655
Q ss_pred hhHHHHHHHhhcc----------------ccccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 121 DTLLENIRGLKEG----------------KAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 121 ~tl~e~L~~L~~g----------------~~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
.++.+++...... +.+.. +..+......++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 99 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~ 176 (269)
T PRK13648 99 SIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD 176 (269)
T ss_pred ccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 6676666432110 00011 2234444567888999999999999999999999999999983
No 186
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=1.3e-15 Score=158.09 Aligned_cols=156 Identities=14% Similarity=0.196 Sum_probs=113.6
Q ss_pred eeEeec-CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccc
Q 006782 42 TLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (631)
Q Consensus 42 ~ls~~~-g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~v 111 (631)
++++.+ +...+|+++||.+++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++++
T Consensus 6 ~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 82 (274)
T PRK13644 6 NVSYSYPDGTPALENINLVIKKGE---YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIV 82 (274)
T ss_pred EEEEEcCCCCceeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEE
Confidence 334444 23468999999999999 99999999999999999999998 89999999997532 1357899
Q ss_pred cCCCCC-CchhhHHHHHHHhhccc---------cc-------cc-cccccccccccCceeeeecCccEEEEeechhcccc
Q 006782 112 FDDPRL-TDYDTLLENIRGLKEGK---------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (631)
Q Consensus 112 fq~p~l-~d~~tl~e~L~~L~~g~---------~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dE 173 (631)
+|+|.. +...++.+++....... .+ .+ ...+...+..++|+.+++..+++++.++.+++.||
T Consensus 83 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 162 (274)
T PRK13644 83 FQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE 162 (274)
T ss_pred EEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999863 55578888886432100 00 11 11233345677889999999999999999999999
Q ss_pred ccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 174 l~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
|+..+|.. ..+.+..+.+++...|.++
T Consensus 163 Pt~gLD~~-------~~~~l~~~l~~l~~~g~ti 189 (274)
T PRK13644 163 VTSMLDPD-------SGIAVLERIKKLHEKGKTI 189 (274)
T ss_pred CcccCCHH-------HHHHHHHHHHHHHhCCCEE
Confidence 99999983 3334444455544445543
No 187
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=1.5e-15 Score=158.28 Aligned_cols=135 Identities=13% Similarity=0.149 Sum_probs=103.8
Q ss_pred eEeecC-ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---------ccccccc
Q 006782 43 LSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDGN 111 (631)
Q Consensus 43 ls~~~g-~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---------~~~i~~v 111 (631)
+++.++ ...+++++||.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... ...++|+
T Consensus 11 l~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v 87 (283)
T PRK13636 11 LNYNYSDGTHALKGININIKKGE---VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMV 87 (283)
T ss_pred EEEEeCCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEE
Confidence 334443 4569999999999999 99999999999999999999999 89999999997542 1357899
Q ss_pred cCCCC-CCchhhHHHHHHHhhc--ccc--------------ccc-cccccccccccCceeeeecCccEEEEeechhcccc
Q 006782 112 FDDPR-LTDYDTLLENIRGLKE--GKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (631)
Q Consensus 112 fq~p~-l~d~~tl~e~L~~L~~--g~~--------------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dE 173 (631)
||++. .+...++.+++..... +.. +.. ...+......++|+.+++..+++++.++.+++.||
T Consensus 88 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDE 167 (283)
T PRK13636 88 FQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDE 167 (283)
T ss_pred ecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99984 2334688998864221 100 001 11233345677889999999999999999999999
Q ss_pred ccCCCcE
Q 006782 174 LRPLIDL 180 (631)
Q Consensus 174 l~~~lDl 180 (631)
|+..+|.
T Consensus 168 Pt~gLD~ 174 (283)
T PRK13636 168 PTAGLDP 174 (283)
T ss_pred CccCCCH
Confidence 9999997
No 188
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=1.6e-15 Score=146.30 Aligned_cols=107 Identities=22% Similarity=0.324 Sum_probs=94.1
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCchhh
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDT 122 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~t 122 (631)
.++++++|.+++|+ +++|+||||||||||+++|+|++ |..|.|.++|.... .+.++++||++.+++ .+
T Consensus 16 ~~l~~i~~~i~~G~---~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t 91 (171)
T cd03228 16 PVLKDVSLTIKPGE---KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GT 91 (171)
T ss_pred ccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-ch
Confidence 68999999999999 99999999999999999999999 89999999996432 135789999998776 58
Q ss_pred HHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 123 LLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 123 l~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
+.+++ .++|+.+++..++.++.++.+++.|||+..+|..
T Consensus 92 ~~e~l--------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~ 130 (171)
T cd03228 92 IRENI--------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPE 130 (171)
T ss_pred HHHHh--------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 88876 5667888899999999999999999999999973
No 189
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.8e-15 Score=154.34 Aligned_cols=193 Identities=15% Similarity=0.200 Sum_probs=133.0
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC---C---CceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll---p---~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|+. | ..|.|.++|.... .
T Consensus 9 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14255 9 SDVHLFYGKFEALKGIDLDFNQNE---ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLR 85 (252)
T ss_pred EeEEEEECCeeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhc
Confidence 334444455679999999999999 99999999999999999999985 3 3899999997432 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--c--c------cc-------cc-----cccccccccccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G--K------AV-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g--~------~I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
+.+++++|++.+++ .++.+++..... + . .+ .. ...+...+..++|+.+++..++.++
T Consensus 86 ~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~ 164 (252)
T PRK14255 86 KQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA 164 (252)
T ss_pred CeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh
Confidence 35889999998887 589988864211 1 0 00 00 1123334567788999999999999
Q ss_pred EeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
.++.+++.|||+..+|.. ....+..+.+++.. + .+=+++.++.+.
T Consensus 165 ~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~-~---------------------------~tii~vsH~~~~ 209 (252)
T PRK14255 165 VKPDVILLDEPTSALDPI-------SSTQIENMLLELRD-Q---------------------------YTIILVTHSMHQ 209 (252)
T ss_pred cCCCEEEEcCCCccCCHH-------HHHHHHHHHHHHHh-C---------------------------CEEEEEECCHHH
Confidence 999999999999999983 22222222222211 1 123444455544
Q ss_pred CCCCCCceeeeccCCcccHHHHHHHhccc
Q 006782 244 FTGFQNPTYILKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 244 ~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~ 272 (631)
....++++++|+.+..+..+...+.+..+
T Consensus 210 ~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14255 210 ASRISDKTAFFLTGNLIEFADTKQMFLNP 238 (252)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 44567888888888766555555555443
No 190
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.1e-15 Score=158.09 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=102.0
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---------cccccccc
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDGNF 112 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---------~~~i~~vf 112 (631)
+++.++...+++++||.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++++|
T Consensus 7 l~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~ 83 (271)
T PRK13638 7 LWFRYQDEPVLKGLNLDFSLSP---VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVF 83 (271)
T ss_pred EEEEcCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEe
Confidence 3344455679999999999999 89999999999999999999999 89999999997531 13578999
Q ss_pred CCCCC-CchhhHHHHHHHhhc--cc---c-----------cccc-ccccccccccCceeeeecCccEEEEeechhccccc
Q 006782 113 DDPRL-TDYDTLLENIRGLKE--GK---A-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (631)
Q Consensus 113 q~p~l-~d~~tl~e~L~~L~~--g~---~-----------I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl 174 (631)
|++.. +...++.+++..... +. . +... ..+......++|+.+++..+++++.++.+++.|||
T Consensus 84 q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEP 163 (271)
T PRK13638 84 QDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEP 163 (271)
T ss_pred eChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 98763 233456677654211 10 0 0011 11223456788899999999999999999999999
Q ss_pred cCCCcE
Q 006782 175 RPLIDL 180 (631)
Q Consensus 175 ~~~lDl 180 (631)
+..+|.
T Consensus 164 t~~LD~ 169 (271)
T PRK13638 164 TAGLDP 169 (271)
T ss_pred cccCCH
Confidence 999997
No 191
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.58 E-value=1.1e-15 Score=153.26 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=105.4
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC------CCceEEEECCcccc---------cc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---------SR 106 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll------p~~G~I~lDg~~~~---------~~ 106 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+
T Consensus 5 ~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (227)
T cd03260 5 DLNVYYGDKHALKDISLDIPKGE---ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRR 81 (227)
T ss_pred EEEEEcCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHh
Confidence 44455555679999999999999 99999999999999999999997 47899999997432 13
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc--c--------cc-------cccc-ccccc--cccccCceeeeecCccEEEEee
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE--G--------KA-------VQVP-IYDFK--SSSRIGYRTLEVPSSRIVIIEG 166 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--g--------~~-------I~~P-vyd~~--~~~rs~~~~~~v~~a~VLIvEG 166 (631)
.++|+||++.++ ..++.+++..... + .. .... ..+.. ....++|+.+++..+++++.++
T Consensus 82 ~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (227)
T cd03260 82 RVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEP 160 (227)
T ss_pred hEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCC
Confidence 578999999888 6899998864211 1 00 0111 11222 2567888999999999999999
Q ss_pred chhccccccCCCcE
Q 006782 167 IYALSEKLRPLIDL 180 (631)
Q Consensus 167 i~lL~dEl~~~lDl 180 (631)
.+++.|||+..+|.
T Consensus 161 ~llllDEPt~~LD~ 174 (227)
T cd03260 161 EVLLLDEPTSALDP 174 (227)
T ss_pred CEEEEeCCCccCCH
Confidence 99999999999997
No 192
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.58 E-value=1.8e-15 Score=153.40 Aligned_cols=135 Identities=23% Similarity=0.232 Sum_probs=106.8
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCCCC
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPR 116 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~p~ 116 (631)
+++.++...+++++||.+.+|+ ++||+|+||||||||+++|+|.+ |..|.|.++|.+.. .+.+++++|++.
T Consensus 6 l~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~ 82 (237)
T TIGR00968 6 ISKRFGSFQALDDVNLEVPTGS---LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYA 82 (237)
T ss_pred EEEEECCeeeeeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChh
Confidence 3444455679999999999999 99999999999999999999998 88999999997542 245789999999
Q ss_pred CCchhhHHHHHHHhhc--cc-------cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 117 LTDYDTLLENIRGLKE--GK-------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 117 l~d~~tl~e~L~~L~~--g~-------~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
+|+..++.+++..... +. .+ .. +..+......++|+.+++..++.++-.+.+++.|||+..+|
T Consensus 83 ~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD 162 (237)
T TIGR00968 83 LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162 (237)
T ss_pred hccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9988899998864321 10 00 01 11223334567788899999999999999999999999999
Q ss_pred E
Q 006782 180 L 180 (631)
Q Consensus 180 l 180 (631)
.
T Consensus 163 ~ 163 (237)
T TIGR00968 163 A 163 (237)
T ss_pred H
Confidence 8
No 193
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.58 E-value=1.6e-15 Score=168.80 Aligned_cols=213 Identities=17% Similarity=0.253 Sum_probs=157.8
Q ss_pred ceeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC-C----ceEEEECCcccc---
Q 006782 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-S----IAVITMDNYNDS--- 104 (631)
Q Consensus 33 ~~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp-~----~G~I~lDg~~~~--- 104 (631)
+.++.++...|....+...++++|||.+.+|+ ++||+|.|||||||+++.|.+++| . .|.|.++|.+..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE---~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGE---ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCc---EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 45666777777655455589999999999999 999999999999999999999993 3 699999996321
Q ss_pred --------ccccccccCCCC-CC-chhhHHHHHHHhhc--c---------------ccccc--ccc-ccccccccCceee
Q 006782 105 --------SRIIDGNFDDPR-LT-DYDTLLENIRGLKE--G---------------KAVQV--PIY-DFKSSSRIGYRTL 154 (631)
Q Consensus 105 --------~~~i~~vfq~p~-l~-d~~tl~e~L~~L~~--g---------------~~I~~--Pvy-d~~~~~rs~~~~~ 154 (631)
.+.++++||+|. ++ +..++.+.+..... + +.+.. |.. +...|+.+||+.+
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 156899999974 34 44677776654221 0 11222 222 4467899999999
Q ss_pred eecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCe
Q 006782 155 EVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAH 234 (631)
Q Consensus 155 ~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~AD 234 (631)
++-.+..+..++.+++.|||+..+|.. ....-+.+++.++++ .|. |=
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt---~q~qIL~llk~l~~e---~g~---------------------------a~ 208 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVT---TQAQILDLLKDLQRE---LGM---------------------------AV 208 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHH---HHHHHHHHHHHHHHH---cCc---------------------------EE
Confidence 999999999999999999999999984 111122233333322 233 35
Q ss_pred EEEeCCCCCCCCCCCceeeeccCCcccHHHHHHHhccccccccccee
Q 006782 235 IKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETY 281 (631)
Q Consensus 235 iII~N~~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~~~f~ 281 (631)
++|.++......++++|.||++|..++.+...++|.++....++...
T Consensus 209 l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll 255 (539)
T COG1123 209 LFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLL 255 (539)
T ss_pred EEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHHHH
Confidence 66666666667889999999999999999999999998777666554
No 194
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.6e-15 Score=157.40 Aligned_cols=184 Identities=15% Similarity=0.194 Sum_probs=127.5
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---------ccccccccCCCC-CC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDGNFDDPR-LT 118 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---------~~~i~~vfq~p~-l~ 118 (631)
..+++++||.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.++|+||++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGE---MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 468999999999999 99999999999999999999999 88999999997542 135789999974 22
Q ss_pred chhhHHHHHHHhhc--cc--------------cccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 119 DYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 119 d~~tl~e~L~~L~~--g~--------------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
...++.+++..... +. .+.. ...+...++.++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 92 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~ 171 (275)
T PRK13639 92 FAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM 171 (275)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 33588888864211 10 0011 1223334567788999999999999999999999999999983
Q ss_pred EEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCccc
Q 006782 182 VSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVT 261 (631)
Q Consensus 182 IfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~v~ 261 (631)
..+.+.++.+.+.+.|.++ +++.++.+.....|+.+++|+.+..+.
T Consensus 172 -------~~~~l~~~l~~l~~~~~ti---------------------------l~vtH~~~~~~~~~d~i~~l~~G~i~~ 217 (275)
T PRK13639 172 -------GASQIMKLLYDLNKEGITI---------------------------IISTHDVDLVPVYADKVYVMSDGKIIK 217 (275)
T ss_pred -------HHHHHHHHHHHHHHCCCEE---------------------------EEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 2333444444443334432 333333333234567777777776655
Q ss_pred HHHHHHHhc
Q 006782 262 VDEIKAVMS 270 (631)
Q Consensus 262 ~~~Ik~vL~ 270 (631)
.+...+++.
T Consensus 218 ~g~~~~~~~ 226 (275)
T PRK13639 218 EGTPKEVFS 226 (275)
T ss_pred eCCHHHHhc
Confidence 555555554
No 195
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.7e-15 Score=157.21 Aligned_cols=184 Identities=13% Similarity=0.157 Sum_probs=129.2
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCC-CCch
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPR-LTDY 120 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~-l~d~ 120 (631)
..++++++|.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.++|+||++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGE---WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 458999999999999 99999999999999999999999 89999999997542 245789999985 5666
Q ss_pred hhHHHHHHHhhc--cc---cc-----------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEE
Q 006782 121 DTLLENIRGLKE--GK---AV-----------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (631)
Q Consensus 121 ~tl~e~L~~L~~--g~---~I-----------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIf 183 (631)
.++.+++..... +. .+ .. ...+......++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~-- 174 (277)
T PRK13642 97 ATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPT-- 174 (277)
T ss_pred CCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH--
Confidence 789999864221 10 00 00 1123334567888999999999999999999999999999983
Q ss_pred EEcChhhHHHHHHHHHHHHh-CCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCcccH
Q 006782 184 VTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTV 262 (631)
Q Consensus 184 Vdad~d~rLiRRI~RDv~er-G~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~v~~ 262 (631)
..+.+..+.+.+.+. |.+ =+++.++.+... .++.+++|+.++.+..
T Consensus 175 -----~~~~l~~~l~~l~~~~g~t---------------------------iil~sH~~~~~~-~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 175 -----GRQEIMRVIHEIKEKYQLT---------------------------VLSITHDLDEAA-SSDRILVMKAGEIIKE 221 (277)
T ss_pred -----HHHHHHHHHHHHHHhcCCE---------------------------EEEEeCCHHHHH-hCCEEEEEECCEEEEe
Confidence 233333333333322 333 233334433322 4667777777776655
Q ss_pred HHHHHHhcc
Q 006782 263 DEIKAVMSK 271 (631)
Q Consensus 263 ~~Ik~vL~~ 271 (631)
+...+++..
T Consensus 222 g~~~~~~~~ 230 (277)
T PRK13642 222 AAPSELFAT 230 (277)
T ss_pred CCHHHHhcC
Confidence 566665543
No 196
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.58 E-value=2.6e-15 Score=147.86 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=107.6
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDD 114 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq~ 114 (631)
++++.++...++++++|.+.+|+ ++||+||||||||||+++|+|.+ |..|.|.++|.... .+.++|++|+
T Consensus 5 ~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (198)
T TIGR01189 5 NLACSRGERMLFEGLSFTLNAGE---ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHL 81 (198)
T ss_pred EEEEEECCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccC
Confidence 34445566789999999999999 89999999999999999999998 89999999997532 1457889998
Q ss_pred CCCCchhhHHHHHHHhhc--c-cc--c-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 115 PRLTDYDTLLENIRGLKE--G-KA--V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--g-~~--I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+.+++..++.+++..... + .. + .. +..+...+..++|+.+++..++.++.++.+++.|||++.+|.
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 160 (198)
T TIGR01189 82 PGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160 (198)
T ss_pred cccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 888877899998864321 1 00 0 01 112333456778899999999999999999999999999997
No 197
>PRK06547 hypothetical protein; Provisional
Probab=99.58 E-value=9.3e-15 Score=142.32 Aligned_cols=153 Identities=19% Similarity=0.200 Sum_probs=111.7
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccccccCCCCCCchhhHHHHHHHhhccccccccccc
Q 006782 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD 142 (631)
Q Consensus 63 gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd 142 (631)
+..+.+|+|.|++||||||+++.|+..+ +...+++|+++.....+ ......+.+.+.. .|+....+ ||
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~-~~~~~~~d~~~~~~~~~--------~~~~~~l~~~~l~--~g~~~~~~-yd 79 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART-GFQLVHLDDLYPGWHGL--------AAASEHVAEAVLD--EGRPGRWR-WD 79 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh-CCCeecccceecccccC--------ChHHHHHHHHHHh--CCCCceec-CC
Confidence 4567899999999999999999999987 56688888876322111 0122334444444 56667777 99
Q ss_pred cccccccCceeeeecCccEEEEeechhccccccCCCc-----EEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q 006782 143 FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID-----LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (631)
Q Consensus 143 ~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD-----lkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~ 217 (631)
+..+.+.. ...+.+.+++|+||.+++.++.++.+| ++|||++|.++|+.|++.||.. ...-. +.
T Consensus 80 ~~~~~~~~--~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-----~~~~~----~~ 148 (172)
T PRK06547 80 WANNRPGD--WVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD-----YAPHW----EM 148 (172)
T ss_pred CCCCCCCC--cEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-----hhHHH----HH
Confidence 88665432 335667789999999999989999999 9999999999999999999832 22223 34
Q ss_pred cccchhhccc--CCCCCCeEEEe
Q 006782 218 VYPMYKAFIE--PDLQTAHIKII 238 (631)
Q Consensus 218 v~P~~~~fIe--P~k~~ADiII~ 238 (631)
..|..+.|++ +.+..||+|+.
T Consensus 149 w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 149 WAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHHHHhcCCChhccEEEec
Confidence 4566666665 56789999974
No 198
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.58 E-value=1.4e-15 Score=147.54 Aligned_cols=109 Identities=23% Similarity=0.277 Sum_probs=96.3
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccCCCCCCchhhH
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLTDYDTL 123 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq~p~l~d~~tl 123 (631)
.++++++|.+++|+ +++|+|+||||||||+++|+|+. |..|.|.++|.... .+.++|++|++.+++ .++
T Consensus 16 ~~l~~i~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (178)
T cd03247 16 QVLKNLSLELKQGE---KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTL 91 (178)
T ss_pred cceEEEEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccH
Confidence 68999999999999 89999999999999999999998 89999999986432 245789999998876 588
Q ss_pred HHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 124 LENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 124 ~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.+++ ....++++.+++..++.++.++.+++.|||+..+|.
T Consensus 92 ~~~i-----------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~ 131 (178)
T cd03247 92 RNNL-----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDP 131 (178)
T ss_pred HHhh-----------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 8887 346677888999999999999999999999999997
No 199
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.58 E-value=2e-15 Score=155.64 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=100.9
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------ccccccccCCCC-
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPR- 116 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~vfq~p~- 116 (631)
...+++++||.+++|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.++++||++.
T Consensus 23 ~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGE---TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 3679999999999999 99999999999999999999998 89999999996432 135889999973
Q ss_pred -CCchhhHHHHHHHhhc---c--c------------ccccc--ccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 117 -LTDYDTLLENIRGLKE---G--K------------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 117 -l~d~~tl~e~L~~L~~---g--~------------~I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
+++..++.+++..... + . .+... ..+......++|+.+++..+++++.++.+++.|||+.
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~ 179 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVS 179 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 4556788887743110 0 0 01111 1233345677889999999999999999999999999
Q ss_pred CCcE
Q 006782 177 LIDL 180 (631)
Q Consensus 177 ~lDl 180 (631)
.+|.
T Consensus 180 ~LD~ 183 (265)
T TIGR02769 180 NLDM 183 (265)
T ss_pred cCCH
Confidence 9997
No 200
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2.6e-15 Score=153.30 Aligned_cols=192 Identities=15% Similarity=0.165 Sum_probs=131.8
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC---C---CceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll---p---~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...+|++++|.+++|+ ++||+|+||||||||+++|+|++ | +.|.|.++|.... .
T Consensus 10 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (253)
T PRK14261 10 KNLNLWYGEKHALYDITISIPKNR---VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALR 86 (253)
T ss_pred eeeEEEECCeeeeeeeEEEECCCc---EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhh
Confidence 344455556679999999999999 99999999999999999999986 2 3799999987532 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--cc----ccc-----------c-----cccccccccccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AVQ-----------V-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g~----~I~-----------~-----Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
+.++|++|++.+|+. ++.+++..... +. ... . ...+......++|+.+++..++.++
T Consensus 87 ~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 165 (253)
T PRK14261 87 RKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLA 165 (253)
T ss_pred ceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHh
Confidence 357899999998874 99999874321 10 000 0 0122333456778899999999999
Q ss_pred EeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
.++.+++.|||+..+|.. ....+..+.+.+.+ + .+=+++.++.+.
T Consensus 166 ~~p~lllLDEP~~gLD~~-------~~~~l~~~l~~~~~-~---------------------------~tvii~sh~~~~ 210 (253)
T PRK14261 166 VNPEVILMDEPCSALDPI-------ATAKIEDLIEDLKK-E---------------------------YTVIIVTHNMQQ 210 (253)
T ss_pred cCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHhh-C---------------------------ceEEEEEcCHHH
Confidence 999999999999999983 22222222222211 1 123444444444
Q ss_pred CCCCCCceeeeccCCcccHHHHHHHhcc
Q 006782 244 FTGFQNPTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 244 ~~~~~n~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
....++.+++|+.++.+..+...+++..
T Consensus 211 ~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14261 211 AARVSDYTGFMYLGKLIEFDKTTQIFEN 238 (253)
T ss_pred HHhhCCEEEEEECCEEEEcCCHHHHHhC
Confidence 4456788888888776655555555543
No 201
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=2.8e-15 Score=150.95 Aligned_cols=126 Identities=22% Similarity=0.276 Sum_probs=100.6
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCchhh
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDT 122 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~t 122 (631)
.++++++|.+.+|+ ++||+||||||||||+++|+|++ |..|.|.++|.... .+.++++||++.+++ .+
T Consensus 16 ~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (234)
T cd03251 16 PVLRDISLDIPAGE---TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DT 91 (234)
T ss_pred cceeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-cc
Confidence 68999999999999 99999999999999999999999 89999999996432 245789999998886 58
Q ss_pred HHHHHHHhhccc---cc-------cc-------c-----ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 123 LLENIRGLKEGK---AV-------QV-------P-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 123 l~e~L~~L~~g~---~I-------~~-------P-----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+.+++....... .+ .. | ..+......++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 92 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~ 171 (234)
T cd03251 92 VAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDT 171 (234)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 999886432110 00 00 0 11222346777889999999999999999999999999998
No 202
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=2.5e-15 Score=155.52 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=102.7
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCC-CCc
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPR-LTD 119 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~-l~d 119 (631)
...++++++|.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|++|++. .++
T Consensus 21 ~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 97 (271)
T PRK13632 21 ENNALKNVSFEINEGE---YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFI 97 (271)
T ss_pred CccceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcC
Confidence 4568999999999999 99999999999999999999999 89999999997542 235789999984 566
Q ss_pred hhhHHHHHHHhhc--c---cc-----------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 120 YDTLLENIRGLKE--G---KA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 120 ~~tl~e~L~~L~~--g---~~-----------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
..++.+++..... + .. +.. +..+......++|+.+++..+++++.++.+++.||++..+|.
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~ 175 (271)
T PRK13632 98 GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175 (271)
T ss_pred cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 6799999864211 0 00 001 112333456778899999999999999999999999999997
No 203
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2.5e-15 Score=154.00 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=107.1
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...+|++++|.+.+|+ ++||+|+||||||||+++|+|++ | +.|.|.++|.... .
T Consensus 8 ~~v~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~ 84 (258)
T PRK14241 8 KDLNIYYGSFHAVEDVNLNIEPRS---VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84 (258)
T ss_pred eeEEEEECCEeeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHh
Confidence 334444455679999999999999 99999999999999999999998 4 5999999996531 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--c----cc-----------ccc-----cccccccccccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G----KA-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g----~~-----------I~~-----Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
+.++++||++.+++..++.+++..... + .. +.. ...+......++|+.+++..+++++
T Consensus 85 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (258)
T PRK14241 85 RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA 164 (258)
T ss_pred cceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 358899999999988899999864211 1 00 000 1123334567788999999999999
Q ss_pred EeechhccccccCCCcE
Q 006782 164 IEGIYALSEKLRPLIDL 180 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDl 180 (631)
.++.+++.|||+..+|.
T Consensus 165 ~~p~llllDEPt~~LD~ 181 (258)
T PRK14241 165 VEPDVLLMDEPCSALDP 181 (258)
T ss_pred cCCCEEEEcCCCccCCH
Confidence 99999999999999997
No 204
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.57 E-value=3.1e-15 Score=148.14 Aligned_cols=136 Identities=19% Similarity=0.183 Sum_probs=107.5
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDD 114 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq~ 114 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++.+ |+.|.|.++|.... .+.+++++|+
T Consensus 6 ~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~ 82 (204)
T PRK13538 6 NLACERDERILFSGLSFTLNAGE---LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQ 82 (204)
T ss_pred EEEEEECCEEEEecceEEECCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCc
Confidence 34444455679999999999999 99999999999999999999998 89999999986532 2357889998
Q ss_pred CCCCchhhHHHHHHHhhc--c-c---cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 115 PRLTDYDTLLENIRGLKE--G-K---AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--g-~---~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+.+++..++.+++..... + . .+ .. +..+......++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 83 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 162 (204)
T PRK13538 83 PGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK 162 (204)
T ss_pred cccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 888888899999865321 1 0 00 01 112333456778899999999999999999999999999998
No 205
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2.8e-15 Score=154.73 Aligned_cols=191 Identities=14% Similarity=0.173 Sum_probs=132.2
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------cc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------SR 106 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~~ 106 (631)
++++.++...+|++++|.+.+|+ ++||+|+||||||||+++|+|++ | +.|.|.+||.... .+
T Consensus 25 nl~~~~~~~~il~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 101 (267)
T PRK14237 25 DLHVYYGKKEAIKGIDMQFEKNK---ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRK 101 (267)
T ss_pred eEEEEECCeeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhc
Confidence 34444456789999999999999 99999999999999999999998 3 6899999997542 23
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc--cc----ccc-----------c-----cccccccccccCceeeeecCccEEEE
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GK----AVQ-----------V-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--g~----~I~-----------~-----Pvyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
.++|+||++.+++ .++.+++..... +. ... . ...+...+..++|+.+++..+++++.
T Consensus 102 ~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~ 180 (267)
T PRK14237 102 HIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV 180 (267)
T ss_pred ceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 5889999998887 599999875321 10 000 0 01233345677888999999999999
Q ss_pred eechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCC
Q 006782 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (631)
Q Consensus 165 EGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (631)
.+.+++.||++..+|.. ....+..+.+++.. + .+=+++.++.+..
T Consensus 181 ~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~-~---------------------------~tiii~tH~~~~~ 225 (267)
T PRK14237 181 KPDILLMDEPASALDPI-------STMQLEETMFELKK-N---------------------------YTIIIVTHNMQQA 225 (267)
T ss_pred CCCEEEEeCCcccCCHH-------HHHHHHHHHHHHhc-C---------------------------CEEEEEecCHHHH
Confidence 99999999999999973 12222222222211 1 1233343444333
Q ss_pred CCCCCceeeeccCCcccHHHHHHHhcc
Q 006782 245 TGFQNPTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 245 ~~~~n~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
...|+.+++|+.+..+..+...+++..
T Consensus 226 ~~~~d~i~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14237 226 ARASDYTAFFYLGDLIEYDKTRNIFTN 252 (267)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 456788888888776666666666544
No 206
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=3.1e-15 Score=155.60 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=100.9
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccccCCCCC-Cc
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDPRL-TD 119 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vfq~p~l-~d 119 (631)
..+|++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++++||+|.. +.
T Consensus 23 ~~vl~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGE---FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 469999999999999 99999999999999999999999 89999999997532 2357899999852 22
Q ss_pred hhhHHHHHHHhhc--c-c------c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 120 YDTLLENIRGLKE--G-K------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 120 ~~tl~e~L~~L~~--g-~------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
..++.+++..... + . . +.. +..+...+..++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 100 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~ 178 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178 (280)
T ss_pred cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 3467777754211 1 0 0 011 1233445677888999999999999999999999999999983
No 207
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.7e-15 Score=169.01 Aligned_cols=154 Identities=10% Similarity=0.085 Sum_probs=116.2
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccccC
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFD 113 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vfq 113 (631)
+++.++...+++++||.+++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++++||
T Consensus 4 l~~~~~~~~il~~vs~~i~~Ge---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 4 ISKSFPGVKALDNVNLKVRPHS---IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred eEEEeCCEEeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 4455556779999999999999 89999999999999999999998 89999999996432 235889999
Q ss_pred CCCCCchhhHHHHHHHhhc---cc---------cc-------ccc-ccccccccccCceeeeecCccEEEEeechhcccc
Q 006782 114 DPRLTDYDTLLENIRGLKE---GK---------AV-------QVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~---g~---------~I-------~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dE 173 (631)
++.+++..++.+++..... +. .+ ... ..+...++.++|+.+++..+++++.++.+++.||
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE 160 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE 160 (491)
T ss_pred ccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 9988888899999864211 10 00 011 1233345678899999999999999999999999
Q ss_pred ccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCC
Q 006782 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (631)
Q Consensus 174 l~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s 206 (631)
|+..+|.. ....+..+.+++...|.+
T Consensus 161 Pt~~LD~~-------~~~~l~~~l~~l~~~g~t 186 (491)
T PRK10982 161 PTSSLTEK-------EVNHLFTIIRKLKERGCG 186 (491)
T ss_pred CCCCCCHH-------HHHHHHHHHHHHHhCCCE
Confidence 99999983 333344444444444444
No 208
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2.2e-15 Score=157.30 Aligned_cols=136 Identities=18% Similarity=0.238 Sum_probs=105.6
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC---C---CceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll---p---~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|+. | +.|.|.++|.... .
T Consensus 43 ~~l~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~ 119 (286)
T PRK14275 43 KNFSIYYGEFEAVKKVNADILSKY---VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLR 119 (286)
T ss_pred eeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhh
Confidence 344455555679999999999999 99999999999999999999974 3 8999999986431 2
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--cc----c----c-------cc-----cccccccccccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK----A----V-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g~----~----I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
+.++|++|++.+++. ++.+++..... +. . + .. ...+...+..++|+.+++..++.++
T Consensus 120 ~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 198 (286)
T PRK14275 120 KKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLA 198 (286)
T ss_pred hcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 358899999988874 99998864221 10 0 0 00 1123334567788999999999999
Q ss_pred EeechhccccccCCCcE
Q 006782 164 IEGIYALSEKLRPLIDL 180 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDl 180 (631)
.++.+++.||++..+|.
T Consensus 199 ~~p~lllLDEPt~gLD~ 215 (286)
T PRK14275 199 VEPEILLLDEPTSALDP 215 (286)
T ss_pred cCCCEEEEeCCCccCCH
Confidence 99999999999999997
No 209
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2.4e-15 Score=155.57 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=104.9
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC------CCceEEEECCcccc---------cc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---------SR 106 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll------p~~G~I~lDg~~~~---------~~ 106 (631)
++++.++...+|++++|.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.++|.... .+
T Consensus 18 nl~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~ 94 (269)
T PRK14259 18 NVTISYGTFEAVKNVFCDIPRGK---VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRR 94 (269)
T ss_pred eEEEEECCEEEEcceEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhh
Confidence 34444555679999999999999 99999999999999999999986 37899999986431 13
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc--c--c----cc-------cc-----cccccccccccCceeeeecCccEEEEee
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE--G--K----AV-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--g--~----~I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIvEG 166 (631)
.++|+||++.+|+ .++.+++..... + . .+ .. ...+......++|+.+++..+++++.++
T Consensus 95 ~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 173 (269)
T PRK14259 95 RIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEP 173 (269)
T ss_pred ceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCC
Confidence 5889999998887 499999864321 1 0 00 00 0123333567788999999999999999
Q ss_pred chhccccccCCCcE
Q 006782 167 IYALSEKLRPLIDL 180 (631)
Q Consensus 167 i~lL~dEl~~~lDl 180 (631)
.+++.|||+..+|.
T Consensus 174 ~lllLDEPt~gLD~ 187 (269)
T PRK14259 174 EVILMDEPCSALDP 187 (269)
T ss_pred CEEEEcCCCccCCH
Confidence 99999999999997
No 210
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.57 E-value=9.9e-16 Score=177.15 Aligned_cols=182 Identities=17% Similarity=0.235 Sum_probs=132.3
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCc
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTD 119 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d 119 (631)
....+|+++|+.+++|+ .|||+|+||||||||+|.|.|++ |..|.|.+||++... +.++++.|++.+|.
T Consensus 484 ~~~~vL~~isL~I~~Ge---~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~ 560 (709)
T COG2274 484 DDPPVLEDLSLEIPPGE---KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS 560 (709)
T ss_pred CCcchhhceeEEeCCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhc
Confidence 33379999999999999 79999999999999999999999 999999999996543 67999999998886
Q ss_pred hhhHHHHHHHhhcc----------------ccc-ccc-ccccccc----cccCceeeeecCccEEEEeechhccccccCC
Q 006782 120 YDTLLENIRGLKEG----------------KAV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 120 ~~tl~e~L~~L~~g----------------~~I-~~P-vyd~~~~----~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
.++.||+..-... +.+ ..| -|+...+ ..+||+++++..++.++-++.+++.||.++.
T Consensus 561 -gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSa 639 (709)
T COG2274 561 -GSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSA 639 (709)
T ss_pred -CcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 5888888643221 111 123 2444432 4688999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHH--hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeec
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQR--VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILK 255 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~e--rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLK 255 (631)
+|.- -.+++...+.+ .|+|. |+|.+.... -..++.++||+
T Consensus 640 LD~~----------sE~~I~~~L~~~~~~~T~---------------------------I~IaHRl~t-i~~adrIiVl~ 681 (709)
T COG2274 640 LDPE----------TEAIILQNLLQILQGRTV---------------------------IIIAHRLST-IRSADRIIVLD 681 (709)
T ss_pred cCHh----------HHHHHHHHHHHHhcCCeE---------------------------EEEEccchH-hhhccEEEEcc
Confidence 9972 12333333322 12332 333332222 23345566778
Q ss_pred cCCcccHHHHHHHhcc
Q 006782 256 STRPVTVDEIKAVMSK 271 (631)
Q Consensus 256 s~~~v~~~~Ik~vL~~ 271 (631)
.++.+..+...+.+..
T Consensus 682 ~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 682 QGKIVEQGSHEELLAQ 697 (709)
T ss_pred CCceeccCCHHHHHHh
Confidence 8888877777777765
No 211
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=2.4e-15 Score=156.67 Aligned_cols=129 Identities=15% Similarity=0.184 Sum_probs=102.1
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCc---eEEEECCccccc-------cccccccCCCC-C
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI---AVITMDNYNDSS-------RIIDGNFDDPR-L 117 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~---G~I~lDg~~~~~-------~~i~~vfq~p~-l 117 (631)
..++++++|.+.+|+ ++||+|+||||||||+++|+|++ |.. |.|.++|..... +.++++||++. .
T Consensus 20 ~~~l~~v~l~i~~Ge---~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (282)
T PRK13640 20 KPALNDISFSIPRGS---WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQ 96 (282)
T ss_pred ccceeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHh
Confidence 458999999999999 99999999999999999999999 765 899999975421 35789999985 5
Q ss_pred CchhhHHHHHHHhhc--cc---c----c-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 TDYDTLLENIRGLKE--GK---A----V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~--g~---~----I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++..++.+++..... +. . + .. +..+......++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~ 176 (282)
T PRK13640 97 FVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDP 176 (282)
T ss_pred hccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 666799999864211 10 0 0 01 122333456778899999999999999999999999999998
Q ss_pred E
Q 006782 181 R 181 (631)
Q Consensus 181 k 181 (631)
.
T Consensus 177 ~ 177 (282)
T PRK13640 177 A 177 (282)
T ss_pred H
Confidence 3
No 212
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=2.5e-15 Score=168.35 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=116.9
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C--CceEEEECCcccc--------cccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS--------SRIIDG 110 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p--~~G~I~lDg~~~~--------~~~i~~ 110 (631)
++++.++...+++++||.+++|+ ++||+||||||||||+++|+|++ | +.|.|.++|.... .+.++|
T Consensus 10 nl~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 86 (506)
T PRK13549 10 NITKTFGGVKALDNVSLKVRAGE---IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAI 86 (506)
T ss_pred eeEEEeCCeEeecceeEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEE
Confidence 34445556679999999999999 89999999999999999999998 4 6999999986432 135899
Q ss_pred ccCCCCCCchhhHHHHHHHhhc----cc--------c-------cccc-ccccccccccCceeeeecCccEEEEeechhc
Q 006782 111 NFDDPRLTDYDTLLENIRGLKE----GK--------A-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~----g~--------~-------I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL 170 (631)
+||++.+++..++.+++..... +. . +..+ ..+...+..++|+++++..+++++.++.+++
T Consensus 87 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll 166 (506)
T PRK13549 87 IHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLI 166 (506)
T ss_pred EEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998888899999865321 10 0 0111 1233345678899999999999999999999
Q ss_pred cccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 171 ~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
.|||++.+|.. ....+..+.+++...|.++
T Consensus 167 LDEPt~~LD~~-------~~~~l~~~l~~l~~~~~tv 196 (506)
T PRK13549 167 LDEPTASLTES-------ETAVLLDIIRDLKAHGIAC 196 (506)
T ss_pred EeCCCCCCCHH-------HHHHHHHHHHHHHHCCCEE
Confidence 99999999973 3333444444444445443
No 213
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.57 E-value=2.4e-14 Score=155.12 Aligned_cols=165 Identities=21% Similarity=0.283 Sum_probs=119.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEEECCcccccc---ccc-ccc--------CCCCCCchhhHHHHH
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDSSR---IID-GNF--------DDPRLTDYDTLLENI 127 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll-p~---~G~I~lDg~~~~~~---~i~-~vf--------q~p~l~d~~tl~e~L 127 (631)
.+|++|||+|++|||||||++.|.+++ +. .+.|++||++.... ... .++ ..|..+|.....+++
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~L 289 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVETL 289 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHHHH
Confidence 468999999999999999999999988 43 89999999986431 110 111 125567766667777
Q ss_pred HHh----hcccccccccccccccc----ccCc--eeeeecCccEEEEeechhcccc------------------------
Q 006782 128 RGL----KEGKAVQVPIYDFKSSS----RIGY--RTLEVPSSRIVIIEGIYALSEK------------------------ 173 (631)
Q Consensus 128 ~~L----~~g~~I~~Pvyd~~~~~----rs~~--~~~~v~~a~VLIvEGi~lL~dE------------------------ 173 (631)
..+ +.|+.+.+|+||+..+. |... ......+.+|||+||++++..-
T Consensus 290 ~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~Y~ 369 (460)
T PLN03046 290 EALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEAYY 369 (460)
T ss_pred HHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHHHH
Confidence 666 57889999999999965 4332 1334578899999999887621
Q ss_pred --ccCCCcEEEEEEcCh-hhHHHHHHHHHHHHh-----CCCHHHHHHHHHhccccchhhcccCC
Q 006782 174 --LRPLIDLRVSVTGGV-HFDLVKRVFRDIQRV-----GQEPEEIIHQISETVYPMYKAFIEPD 229 (631)
Q Consensus 174 --l~~~lDlkIfVdad~-d~rLiRRI~RDv~er-----G~s~e~Vi~q~~~~v~P~~~~fIeP~ 229 (631)
+...+|..|++.++. +.-+.||++++.+.+ |++.++|.+ |.+..+|+|+.|.+..
T Consensus 370 ~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~-FV~~YmPaY~~y~~~L 432 (460)
T PLN03046 370 DAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMD-FVSRYLPAYKAYLPTL 432 (460)
T ss_pred HHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHhhhHHHHHHHHH
Confidence 112467777777664 667778888877554 788888554 5577899999876543
No 214
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2.9e-15 Score=152.65 Aligned_cols=136 Identities=16% Similarity=0.212 Sum_probs=105.8
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC------CceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp------~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|+++ ..|.|.++|.... .
T Consensus 8 ~~l~~~~~~~~~l~~~sl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~ 84 (251)
T PRK14251 8 KDVHLSYGNYEALHGISLDFEEKE---LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELR 84 (251)
T ss_pred EeeEEEECCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhh
Confidence 445555566789999999999999 899999999999999999999972 6899999997531 2
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--c----c----cc-------cc-----cccccccccccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G----K----AV-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g----~----~I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
+.+++++|++.+++ .++.+++..... + . .+ .. ...+......++|+.+++..+++++
T Consensus 85 ~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~ 163 (251)
T PRK14251 85 KEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA 163 (251)
T ss_pred ccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence 35789999998886 689998864321 0 0 00 00 0113334567788999999999999
Q ss_pred EeechhccccccCCCcE
Q 006782 164 IEGIYALSEKLRPLIDL 180 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDl 180 (631)
.++.+++.|||+..+|.
T Consensus 164 ~~p~llllDEP~~~LD~ 180 (251)
T PRK14251 164 VRPKVVLLDEPTSALDP 180 (251)
T ss_pred cCCCEEEecCCCccCCH
Confidence 99999999999999997
No 215
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.56 E-value=3.6e-15 Score=147.55 Aligned_cols=121 Identities=15% Similarity=0.159 Sum_probs=100.6
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh--C-CCceEEEECCccccc--------cccccc
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS--------RIIDGN 111 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l--l-p~~G~I~lDg~~~~~--------~~i~~v 111 (631)
+++.++...++++++|.+.+|+ ++||+|+||||||||+++|++. + |+.|.|.+||..... ..++|+
T Consensus 6 l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 82 (200)
T cd03217 6 LHVSVGGKEILKGVNLTIKKGE---VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLA 82 (200)
T ss_pred EEEEeCCEEeeeccceEECCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEe
Confidence 3344445679999999999999 8999999999999999999998 4 799999999974321 237899
Q ss_pred cCCCCCCchhhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 112 FDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+|++.+++..++.+++.. .....++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 83 ~q~~~~~~~~~~~~~l~~--------------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 137 (200)
T cd03217 83 FQYPPEIPGVKNADFLRY--------------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI 137 (200)
T ss_pred ecChhhccCccHHHHHhh--------------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 999988888788777621 1135677888999999999999999999999999997
No 216
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.6e-15 Score=171.44 Aligned_cols=198 Identities=19% Similarity=0.246 Sum_probs=141.8
Q ss_pred eeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------
Q 006782 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------- 105 (631)
Q Consensus 34 ~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~------- 105 (631)
++..++.-+| -.+....||+|++|++++|+ ++||+||||+||||++.+|..++ |..|.|.+||.+...
T Consensus 466 IeF~~VsFaY-P~Rp~~~Vlk~lsfti~pGe---~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 466 IEFEDVSFAY-PTRPDVPVLKNLSFTIRPGE---VVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred EEEEEeeeec-CCCCCchhhcCceeeeCCCC---EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 4444444333 12335579999999999999 99999999999999999999999 999999999985432
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhccc----------------cc-ccc-ccccccc----cccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGK----------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~g~----------------~I-~~P-vyd~~~~----~rs~~~~~~v~~a~VLI 163 (631)
+.++++-|+|-+|. -++.|||..-...- .| ..| -|+-..+ +.+||++++++.+|+++
T Consensus 542 ~~Ig~V~QEPvLFs-~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 542 RKIGLVGQEPVLFS-GSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHeeeeeccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 67999999999997 48999987543311 01 122 2444444 45889999999999999
Q ss_pred EeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
-+|.++++||.++.+|- +...+++....... .++|+--|.|+. .+.++||.|+
T Consensus 621 r~P~VLILDEATSALDa-------eSE~lVq~aL~~~~-~~rTVlvIAHRL-------------STV~~Ad~Iv------ 673 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDA-------ESEYLVQEALDRLM-QGRTVLVIAHRL-------------STVRHADQIV------ 673 (716)
T ss_pred cCCCEEEEechhhhcch-------hhHHHHHHHHHHhh-cCCeEEEEehhh-------------hHhhhccEEE------
Confidence 99999999999999997 33444544443332 256666666665 2345667554
Q ss_pred CCCCCCceeeeccCCcccHHHHHHHhccc
Q 006782 244 FTGFQNPTYILKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 244 ~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~ 272 (631)
+++.++.++.+..++.+...
T Consensus 674 ---------vi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 674 ---------VIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred ---------EEcCCeEEecccHHHHhhCc
Confidence 34456666666666666554
No 217
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=2.7e-15 Score=155.32 Aligned_cols=192 Identities=14% Similarity=0.172 Sum_probs=131.0
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC------CCceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll------p~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .
T Consensus 28 ~~l~~~~~~~~il~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 104 (271)
T PRK14238 28 QNLNLWYGEDHALKNINLDIHENE---VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104 (271)
T ss_pred eeeEEEECCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHh
Confidence 334444455578999999999999 99999999999999999999987 38899999996431 2
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--cc----cccc----------------cccccccccccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AVQV----------------PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g~----~I~~----------------Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
+.++|+||++.+|+ .++.+++..... +. .... ...+......++|+.+++..+++++
T Consensus 105 ~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~ 183 (271)
T PRK14238 105 TNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLA 183 (271)
T ss_pred hhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence 35889999998887 489999864211 10 0000 0112234457788999999999999
Q ss_pred EeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
.++.+++.|||+..+|.. ....+.++.+++.+ + .+=+++.++.+.
T Consensus 184 ~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~-~---------------------------~tiiivsH~~~~ 228 (271)
T PRK14238 184 IEPDVILMDEPTSALDPI-------STLKVEELVQELKK-D---------------------------YSIIIVTHNMQQ 228 (271)
T ss_pred cCCCEEEEeCCCCcCCHH-------HHHHHHHHHHHHHc-C---------------------------CEEEEEEcCHHH
Confidence 999999999999999983 11222222222211 1 123444444444
Q ss_pred CCCCCCceeeeccCCcccHHHHHHHhcc
Q 006782 244 FTGFQNPTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 244 ~~~~~n~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
....++.+++|+.+..+..+...+++..
T Consensus 229 i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 229 AARISDKTAFFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 3456777778887776655555555543
No 218
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.56 E-value=3.9e-15 Score=147.26 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=107.7
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDD 114 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq~ 114 (631)
.+++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |+.|.|.++|.... .+.+++++|+
T Consensus 5 ~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (201)
T cd03231 5 ELTCERDGRALFSGLSFTLAAGE---ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHA 81 (201)
T ss_pred EEEEEeCCceeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccc
Confidence 34445556679999999999999 89999999999999999999998 89999999986532 1357899999
Q ss_pred CCCCchhhHHHHHHHhhccc----------ccccc-ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 115 PRLTDYDTLLENIRGLKEGK----------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~g~----------~I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+.+++..++.+++....... ....+ ..+...+..++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 158 (201)
T cd03231 82 PGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158 (201)
T ss_pred cccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 98888889999986542110 01111 12333456778899999999999999999999999999997
No 219
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=2.2e-15 Score=149.98 Aligned_cols=133 Identities=16% Similarity=0.120 Sum_probs=103.9
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------ccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~ 109 (631)
++++.++...+ +++|.+.+ + ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-E---VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCeee--CceEEEcc-e---eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 44556666555 99999998 8 99999999999999999999999 89999999986431 13578
Q ss_pred cccCCCCCCchhhHHHHHHHhhcc-------cc-------cccc-ccccccccccCceeeeecCccEEEEeechhccccc
Q 006782 110 GNFDDPRLTDYDTLLENIRGLKEG-------KA-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (631)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~g-------~~-------I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl 174 (631)
+++|++.+++..++.+++...... .. +..+ ..+......++|+.+++..+++++.++.+++.|||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 158 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEP 158 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999988888999988642211 00 0111 12333456778899999999999999999999999
Q ss_pred cCCCcE
Q 006782 175 RPLIDL 180 (631)
Q Consensus 175 ~~~lDl 180 (631)
+..+|.
T Consensus 159 t~~LD~ 164 (214)
T cd03297 159 FSALDR 164 (214)
T ss_pred cccCCH
Confidence 999997
No 220
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.56 E-value=4.8e-15 Score=147.28 Aligned_cols=137 Identities=14% Similarity=0.183 Sum_probs=106.4
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----ccccccccCCCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDDPR 116 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----~~~i~~vfq~p~ 116 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|+. |+.|.|.++|.... ...++++++.+.
T Consensus 7 ~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 83 (207)
T PRK13539 7 DLACVRGGRVLFSGLSFTLAAGE---ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNA 83 (207)
T ss_pred eEEEEECCeEEEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCc
Confidence 34444455679999999999999 99999999999999999999998 89999999986532 235788888877
Q ss_pred CCchhhHHHHHHHhhc--ccc---c-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 117 LTDYDTLLENIRGLKE--GKA---V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 117 l~d~~tl~e~L~~L~~--g~~---I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
+++..++.+++..... +.. + .. ...+...+..++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 84 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 161 (207)
T PRK13539 84 MKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161 (207)
T ss_pred CCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 7777889998864321 100 0 11 1123334567788999999999999999999999999999983
No 221
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=5.9e-15 Score=145.05 Aligned_cols=162 Identities=16% Similarity=0.195 Sum_probs=115.2
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCC
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDD 114 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~ 114 (631)
+++.++...|++++|+.+++|+ +.+|+||||||||||+.+++.++ .+.|.|.+||..... +.+...-|.
T Consensus 7 v~K~y~~~~vl~~isl~i~~g~---iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~ 83 (252)
T COG4604 7 VSKSYGTKVVLDDVSLDIPKGG---ITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQE 83 (252)
T ss_pred hhHhhCCEEeeccceeeecCCc---eeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhh
Confidence 3455688899999999999999 99999999999999999999999 799999999986542 334555555
Q ss_pred CCCCchhhHHHHHHHhhc----ccc-----------cc----ccccccccccccCceeeeecCccEEEEeechhcccccc
Q 006782 115 PRLTDYDTLLENIRGLKE----GKA-----------VQ----VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~----g~~-----------I~----~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~ 175 (631)
.......|+++.+.+-+- |+. ++ .+.-+.-..+.+||++++.-.+-|+.-+--|+|+|||.
T Consensus 84 N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 84 NHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred chhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcc
Confidence 555555666666654321 211 00 11223344678899999999999999999999999999
Q ss_pred CCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHH
Q 006782 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (631)
Q Consensus 176 ~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q 213 (631)
+.+|+| ..+....-++|-..+-|+++.-|+|.
T Consensus 164 NNLDmk------Hsv~iMk~Lrrla~el~KtiviVlHD 195 (252)
T COG4604 164 NNLDMK------HSVQIMKILRRLADELGKTIVVVLHD 195 (252)
T ss_pred cccchH------HHHHHHHHHHHHHHHhCCeEEEEEec
Confidence 999997 22223333333333446654444443
No 222
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.56 E-value=3.3e-15 Score=150.90 Aligned_cols=128 Identities=19% Similarity=0.301 Sum_probs=101.8
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (631)
..++++++|.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.++++||++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (237)
T cd03252 15 PVILDNISLRIKPGE---VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R 90 (237)
T ss_pred ccceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c
Confidence 568999999999999 99999999999999999999999 89999999996432 245889999988775 5
Q ss_pred hHHHHHHHhhccc---cc-------c-------cc-----ccccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 122 TLLENIRGLKEGK---AV-------Q-------VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 122 tl~e~L~~L~~g~---~I-------~-------~P-----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
++.+++.....+. .+ . .| ..+...+..++|+.+++..++.++.++.+++.|||+..+|
T Consensus 91 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD 170 (237)
T cd03252 91 SIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD 170 (237)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence 8898886422110 00 0 00 0122345678889999999999999999999999999999
Q ss_pred EE
Q 006782 180 LR 181 (631)
Q Consensus 180 lk 181 (631)
..
T Consensus 171 ~~ 172 (237)
T cd03252 171 YE 172 (237)
T ss_pred HH
Confidence 83
No 223
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.56 E-value=2.5e-15 Score=155.12 Aligned_cols=128 Identities=13% Similarity=0.237 Sum_probs=98.9
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCC--CCc
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPR--LTD 119 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~--l~d 119 (631)
..+++++||.+++|+ ++||+||||||||||+++|+|++ |..|.|.++|.... .+.++++||++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 469999999999999 89999999999999999999999 89999999986432 135789999875 455
Q ss_pred hhhHHHHHHHhhc---c--------------ccccc-c-ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 120 YDTLLENIRGLKE---G--------------KAVQV-P-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 120 ~~tl~e~L~~L~~---g--------------~~I~~-P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
..++.+++..... + +.+.. + ..+......++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 103 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 182 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDM 182 (267)
T ss_pred chhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCH
Confidence 5566666643110 0 00111 1 11223356778899999999999999999999999999997
No 224
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.56 E-value=3.2e-15 Score=167.28 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=117.4
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------cccccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNF 112 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vf 112 (631)
++++.++...+++++||.+++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++|+|
T Consensus 9 ~l~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~ 85 (501)
T PRK11288 9 GIGKTFPGVKALDDISFDCRAGQ---VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIY 85 (501)
T ss_pred eeEEEECCEEEEeeeeEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEE
Confidence 34444555679999999999999 89999999999999999999998 89999999986432 24588999
Q ss_pred CCCCCCchhhHHHHHHHhhc----c----cc-----------ccc-cccccccccccCceeeeecCccEEEEeechhccc
Q 006782 113 DDPRLTDYDTLLENIRGLKE----G----KA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~----g----~~-----------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
|++.+++..++.+++..... + .. +.. +..+...+..++|+.+++..+++++.++.+++.|
T Consensus 86 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 165 (501)
T PRK11288 86 QELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFD 165 (501)
T ss_pred echhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 99998888899999875211 1 00 011 1123344567889999999999999999999999
Q ss_pred cccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 173 El~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
||+..+|.. ....+..+.+++.+.|.++
T Consensus 166 EPt~~LD~~-------~~~~l~~~l~~~~~~g~ti 193 (501)
T PRK11288 166 EPTSSLSAR-------EIEQLFRVIRELRAEGRVI 193 (501)
T ss_pred CCCCCCCHH-------HHHHHHHHHHHHHhCCCEE
Confidence 999999983 3334444444444445443
No 225
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=4.2e-15 Score=147.54 Aligned_cols=124 Identities=18% Similarity=0.236 Sum_probs=100.4
Q ss_pred eceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCCCCCCchhhHHHHHH
Q 006782 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPRLTDYDTLLENIR 128 (631)
Q Consensus 55 ~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~p~l~d~~tl~e~L~ 128 (631)
++||.+.+|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.+++++|++.+++..++.+++.
T Consensus 16 ~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGE---ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 9999999999 99999999999999999999999 89999999997532 245889999999998889999986
Q ss_pred Hhhc-c-c-------cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 129 GLKE-G-K-------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 129 ~L~~-g-~-------~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
.... . . .+ .. +..+......++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~ 162 (211)
T cd03298 93 LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162 (211)
T ss_pred cccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 4221 0 0 00 00 1123334567788999999999999999999999999999983
No 226
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=4.3e-15 Score=147.44 Aligned_cols=194 Identities=16% Similarity=0.234 Sum_probs=142.1
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------ccccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vf 112 (631)
.++++....+.++++++|.+.+|+ +.+|+||||||||||++.|+|.+ |+.|.+.++|..... +..++.+
T Consensus 5 ~nls~~~~Gr~ll~~vsl~~~pGe---v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlp 81 (259)
T COG4559 5 ENLSYSLAGRRLLDGVSLDLRPGE---VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLP 81 (259)
T ss_pred eeeEEEeecceeccCcceeccCCc---EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcc
Confidence 455566678889999999999999 99999999999999999999999 999999999985432 3457788
Q ss_pred CCCCCCchhhHHHHHHHhhc----ccc-cc-------------ccccc-cccccccCceeeeecCccEE------EEeec
Q 006782 113 DDPRLTDYDTLLENIRGLKE----GKA-VQ-------------VPIYD-FKSSSRIGYRTLEVPSSRIV------IIEGI 167 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~----g~~-I~-------------~Pvyd-~~~~~rs~~~~~~v~~a~VL------IvEGi 167 (631)
|+..+-...++.|.+..-+. +.. .+ ..-+. ..-...++|+.+++..++++ +-+|.
T Consensus 82 Q~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r 161 (259)
T COG4559 82 QNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGR 161 (259)
T ss_pred cCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCc
Confidence 88776555689998875332 111 00 00010 11124678888888777764 34455
Q ss_pred hhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCC
Q 006782 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGF 247 (631)
Q Consensus 168 ~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~ 247 (631)
++|+||+++.+|+. +..-.-++.|+...+|. +=+.|.+|.|.-..+
T Consensus 162 ~L~LDEPtsaLDi~-------HQ~~tl~laR~la~~g~---------------------------~V~~VLHDLNLAA~Y 207 (259)
T COG4559 162 WLFLDEPTSALDIA-------HQHHTLRLARQLAREGG---------------------------AVLAVLHDLNLAAQY 207 (259)
T ss_pred eEEecCCccccchH-------HHHHHHHHHHHHHhcCC---------------------------cEEEEEccchHHHHh
Confidence 88899999999994 55556677777766552 356677777777888
Q ss_pred CCceeeeccCCcccHHHHHHHhcc
Q 006782 248 QNPTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 248 ~n~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
++++.+|+.++.+..+.-.++|..
T Consensus 208 aDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 208 ADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred hheeeeeeCCeEeecCCHHHhcCH
Confidence 888888888888776666666654
No 227
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=3.9e-15 Score=150.17 Aligned_cols=124 Identities=20% Similarity=0.277 Sum_probs=100.5
Q ss_pred eeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCCCCCCchhhHHHHH
Q 006782 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPRLTDYDTLLENI 127 (631)
Q Consensus 54 ~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~p~l~d~~tl~e~L 127 (631)
.+++|.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.++|+||++.+++..++.+++
T Consensus 16 ~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 92 (232)
T PRK10771 16 MRFDLTVERGE---RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNI 92 (232)
T ss_pred ceeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHH
Confidence 38999999999 89999999999999999999998 89999999997532 24588999999998888999998
Q ss_pred HHhhc-c---c-----c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 128 RGLKE-G---K-----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 128 ~~L~~-g---~-----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
..... + . . +.. +..+...+..++|+.+++..++.++.++.+++.|||+..+|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~ 162 (232)
T PRK10771 93 GLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDP 162 (232)
T ss_pred hcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 64211 1 0 0 001 123334456788899999999999999999999999999997
No 228
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=4.3e-15 Score=153.17 Aligned_cols=136 Identities=20% Similarity=0.199 Sum_probs=104.4
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------cc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------SR 106 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~~ 106 (631)
++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ + +.|.|.++|.... .+
T Consensus 15 ~v~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 91 (264)
T PRK14243 15 NLNVYYGSFLAVKNVWLDIPKNQ---ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRR 91 (264)
T ss_pred eeEEEECCEEEeecceEEEcCCC---EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhh
Confidence 33344455679999999999999 99999999999999999999986 2 6899999996431 23
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc--cc------cc-------cc-----cccccccccccCceeeeecCccEEEEee
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GK------AV-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--g~------~I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIvEG 166 (631)
.+++++|++.+++ .++.+++..... +. .+ .. ...+......++|+.+++..+++++.++
T Consensus 92 ~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 170 (264)
T PRK14243 92 RIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQP 170 (264)
T ss_pred hEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 5889999998887 488888864211 10 00 00 0123334557788999999999999999
Q ss_pred chhccccccCCCcEE
Q 006782 167 IYALSEKLRPLIDLR 181 (631)
Q Consensus 167 i~lL~dEl~~~lDlk 181 (631)
.+++.|||+..+|..
T Consensus 171 ~lllLDEPt~~LD~~ 185 (264)
T PRK14243 171 EVILMDEPCSALDPI 185 (264)
T ss_pred CEEEEeCCCccCCHH
Confidence 999999999999973
No 229
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.56 E-value=1.2e-15 Score=148.32 Aligned_cols=133 Identities=21% Similarity=0.272 Sum_probs=105.6
Q ss_pred EeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCCCCC
Q 006782 44 SFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPRL 117 (631)
Q Consensus 44 s~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~p~l 117 (631)
.+.|+..+. ..++.++.|+ +++|+||||||||||++.|+|+. |..|.|.++|.+.. .+-+.++||+.++
T Consensus 8 ~~~y~~~~~--~fdl~v~~ge---~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNL 82 (231)
T COG3840 8 RFSYGHLPM--RFDLTVPAGE---IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNL 82 (231)
T ss_pred EEeeCcceE--EEEEeecCCc---EEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhcccc
Confidence 344444332 5677889999 89999999999999999999999 99999999998543 3568899999999
Q ss_pred CchhhHHHHHHHhhc-c--------cc-------cccc-ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 TDYDTLLENIRGLKE-G--------KA-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~-g--------~~-------I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
|.+.++.+|+..-.. + +. +-.. ..+....+.++|++++++.++.++-+-.++++||+++.+|+
T Consensus 83 FaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP 162 (231)
T COG3840 83 FAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162 (231)
T ss_pred chhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCH
Confidence 999999999964221 1 11 1111 12344567889999999999999999999999999999997
Q ss_pred E
Q 006782 181 R 181 (631)
Q Consensus 181 k 181 (631)
.
T Consensus 163 ~ 163 (231)
T COG3840 163 A 163 (231)
T ss_pred H
Confidence 4
No 230
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.56 E-value=3.3e-15 Score=169.47 Aligned_cols=137 Identities=20% Similarity=0.287 Sum_probs=113.1
Q ss_pred ceeEeecC-ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccc
Q 006782 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (631)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~v 111 (631)
++++|.++ ..++++++||.+++|+ .+||+|||||||||+++.|.+++ |..|.|.+||.+... +.++++
T Consensus 332 ~~vsf~y~~~~~vl~~is~~i~~Ge---~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 332 ENVSFSYPGKKPVLKDISFSIEPGE---KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEcCCCCccccCceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 44556666 5689999999999999 79999999999999999999999 889999999975442 578999
Q ss_pred cCCCCCCchhhHHHHHHHhhcc---cc-------------c-ccc-ccccccc----cccCceeeeecCccEEEEeechh
Q 006782 112 FDDPRLTDYDTLLENIRGLKEG---KA-------------V-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g---~~-------------I-~~P-vyd~~~~----~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
+|++.+|+ .|+.+|+...... +. + ..| -||...+ ..++|+++++..+|.++-++.++
T Consensus 409 ~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~IL 487 (567)
T COG1132 409 SQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPIL 487 (567)
T ss_pred cccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998 8999999865432 11 1 124 3555554 35778999999999999999999
Q ss_pred ccccccCCCcEE
Q 006782 170 LSEKLRPLIDLR 181 (631)
Q Consensus 170 L~dEl~~~lDlk 181 (631)
+.||+++.+|..
T Consensus 488 ILDEaTSalD~~ 499 (567)
T COG1132 488 ILDEATSALDTE 499 (567)
T ss_pred EEeccccccCHH
Confidence 999999999973
No 231
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.56 E-value=7.4e-16 Score=148.45 Aligned_cols=145 Identities=18% Similarity=0.194 Sum_probs=120.7
Q ss_pred ceeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------
Q 006782 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (631)
Q Consensus 33 ~~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------- 104 (631)
.+++..+.+++.-..+...+|++|+|.+++|+ .|||+||||||||||+-.++|+- |++|.|.+.|....
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge---~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGE---TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCc---eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHH
Confidence 44555666677666778889999999999999 79999999999999999999998 99999999997432
Q ss_pred ----ccccccccCCCCCCchhhHHHHHHHhh--cccc--------------cc-ccccccccccccCceeeeecCccEEE
Q 006782 105 ----SRIIDGNFDDPRLTDYDTLLENIRGLK--EGKA--------------VQ-VPIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 105 ----~~~i~~vfq~p~l~d~~tl~e~L~~L~--~g~~--------------I~-~Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
.+.++++||.+.+++.++..||+.-.. .|+. +- -....+..++.++++.+++..++.+.
T Consensus 83 A~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 83 AALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred HHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhc
Confidence 256899999999999999999986432 2211 10 12356667889999999999999999
Q ss_pred EeechhccccccCCCcE
Q 006782 164 IEGIYALSEKLRPLIDL 180 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDl 180 (631)
.++.++|.|||+..+|-
T Consensus 163 ~~P~vLfADEPTGNLD~ 179 (228)
T COG4181 163 GRPDVLFADEPTGNLDR 179 (228)
T ss_pred CCCCEEeccCCCCCcch
Confidence 99999999999999996
No 232
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=3.7e-15 Score=154.65 Aligned_cols=136 Identities=16% Similarity=0.170 Sum_probs=104.3
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...+|++++|.+.+|+ +++|+|+||||||||+++|+|++ | ..|.|.++|.... .
T Consensus 24 ~nl~~~~~~~~~l~~vs~~i~~Ge---~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~ 100 (274)
T PRK14265 24 EGVKVFYGGFLALVDVHLKIPAKK---IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100 (274)
T ss_pred eeEEEEeCCeEEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHh
Confidence 344444555679999999999999 89999999999999999999987 2 4899999996531 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--cc------c-------ccc-----cccccccccccCceeeeecCccEEEEe
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK------A-------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g~------~-------I~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIvE 165 (631)
..++|+||++.+++. ++.+++..... +. . +.. ...+......++|+.+++..+++++.+
T Consensus 101 ~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~ 179 (274)
T PRK14265 101 RQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMK 179 (274)
T ss_pred hcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhC
Confidence 357899999988874 88888864211 00 0 000 112233355778899999999999999
Q ss_pred echhccccccCCCcE
Q 006782 166 GIYALSEKLRPLIDL 180 (631)
Q Consensus 166 Gi~lL~dEl~~~lDl 180 (631)
+.+++.|||+..+|.
T Consensus 180 p~lllLDEPt~~LD~ 194 (274)
T PRK14265 180 PDVLLMDEPCSALDP 194 (274)
T ss_pred CCEEEEeCCcccCCH
Confidence 999999999999997
No 233
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=5e-15 Score=151.03 Aligned_cols=192 Identities=15% Similarity=0.209 Sum_probs=131.2
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh---CC---CceEEEECCcccc---------cc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF---MP---SIAVITMDNYNDS---------SR 106 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l---lp---~~G~I~lDg~~~~---------~~ 106 (631)
++++.++...+++++||.+.+|+ ++||+|+||||||||+++|+|+ .| +.|.|.++|.... .+
T Consensus 8 ~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 84 (250)
T PRK14245 8 DVNFWYGDFHALKGISMEIEEKS---VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRK 84 (250)
T ss_pred EEEEEECCEeEEeeeeEEEeCCC---EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhh
Confidence 33444455679999999999999 9999999999999999999986 33 4799999997532 13
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc--c----c----c-------cccc-----ccccccccccCceeeeecCccEEEE
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE--G----K----A-------VQVP-----IYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--g----~----~-------I~~P-----vyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
.++|+||++.+++ .++.+++..... + . . ...+ ..+......++|+.+++..++.++.
T Consensus 85 ~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14245 85 NVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV 163 (250)
T ss_pred heEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence 5899999998887 588888864211 0 0 0 0010 1122334677889999999999999
Q ss_pred eechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCC
Q 006782 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (631)
Q Consensus 165 EGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (631)
++.+++.|||+..+|.. ....+..+.+++.+ | .+=+++.++.+..
T Consensus 164 ~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~-~---------------------------~tiiivtH~~~~~ 208 (250)
T PRK14245 164 SPSVLLMDEPASALDPI-------STAKVEELIHELKK-D---------------------------YTIVIVTHNMQQA 208 (250)
T ss_pred CCCEEEEeCCCccCCHH-------HHHHHHHHHHHHhc-C---------------------------CeEEEEeCCHHHH
Confidence 99999999999999973 22222222222211 2 1233444444333
Q ss_pred CCCCCceeeeccCCcccHHHHHHHhccc
Q 006782 245 TGFQNPTYILKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 245 ~~~~n~v~iLKs~~~v~~~~Ik~vL~~~ 272 (631)
...++.+++|+.+..+..+...+++.++
T Consensus 209 ~~~~d~v~~l~~G~~~~~~~~~~~~~~~ 236 (250)
T PRK14245 209 ARVSDKTAFFYMGEMVEYDDTKKIFTNP 236 (250)
T ss_pred HhhCCEEEEEECCEEEEECCHHHHhcCC
Confidence 4567888888888766666666666544
No 234
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=4.6e-15 Score=148.94 Aligned_cols=135 Identities=20% Similarity=0.267 Sum_probs=103.9
Q ss_pred eEeecC-ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccC
Q 006782 43 LSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFD 113 (631)
Q Consensus 43 ls~~~g-~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq 113 (631)
+++.++ ...++++++|.+.+|+ +++|+||||||||||+++|++++ |..|.|.++|.... .+.++|+||
T Consensus 8 l~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 84 (229)
T cd03254 8 VNFSYDEKKPVLKDINFSIKPGE---TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQ 84 (229)
T ss_pred EEEecCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecC
Confidence 334443 2458999999999999 89999999999999999999999 89999999986432 235789999
Q ss_pred CCCCCchhhHHHHHHHhhccc---cc-------cc-------c-----ccccccccccCceeeeecCccEEEEeechhcc
Q 006782 114 DPRLTDYDTLLENIRGLKEGK---AV-------QV-------P-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~g~---~I-------~~-------P-----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~ 171 (631)
++.+++. ++.+++....... .+ .. | ..+......++|+.+++..+++++-++.+++.
T Consensus 85 ~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llll 163 (229)
T cd03254 85 DTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILIL 163 (229)
T ss_pred Cchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9988775 8888886432110 00 00 0 01122356778899999999999999999999
Q ss_pred ccccCCCcEE
Q 006782 172 EKLRPLIDLR 181 (631)
Q Consensus 172 dEl~~~lDlk 181 (631)
|||+..+|..
T Consensus 164 DEP~~~LD~~ 173 (229)
T cd03254 164 DEATSNIDTE 173 (229)
T ss_pred eCccccCCHH
Confidence 9999999983
No 235
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=3.4e-15 Score=155.80 Aligned_cols=128 Identities=18% Similarity=0.210 Sum_probs=99.4
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------------ccccccccCCCCC
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------------SRIIDGNFDDPRL 117 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------------~~~i~~vfq~p~l 117 (631)
.+++++||.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++|++|++..
T Consensus 25 ~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNK---VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 58999999999999 99999999999999999999999 89999999986431 1357899998742
Q ss_pred -CchhhHHHHHHHhhc--cc--------------ccccc--ccccccccccCceeeeecCccEEEEeechhccccccCCC
Q 006782 118 -TDYDTLLENIRGLKE--GK--------------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 118 -~d~~tl~e~L~~L~~--g~--------------~I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
+...++.+++..... +. .+..+ ..+......++|+.+++..+++++.++.+++.|||+..+
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~L 181 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGL 181 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC
Confidence 223588888864211 10 01111 123334567888999999999999999999999999999
Q ss_pred cEE
Q 006782 179 DLR 181 (631)
Q Consensus 179 Dlk 181 (631)
|..
T Consensus 182 D~~ 184 (289)
T PRK13645 182 DPK 184 (289)
T ss_pred CHH
Confidence 983
No 236
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.55 E-value=2.6e-15 Score=169.05 Aligned_cols=184 Identities=15% Similarity=0.187 Sum_probs=130.4
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc----------ccccccccCCCC--C
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----------SRIIDGNFDDPR--L 117 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~----------~~~i~~vfq~p~--l 117 (631)
..+|++|||.+.+|+ ++||+||||||||||+++|++++|..|.|.++|.... .+.++|+||++. +
T Consensus 299 ~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGE---TLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 568999999999999 9999999999999999999999988999999986431 235799999973 6
Q ss_pred CchhhHHHHHHHhh--cc-----c----c-------cccc--ccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 118 TDYDTLLENIRGLK--EG-----K----A-------VQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 118 ~d~~tl~e~L~~L~--~g-----~----~-------I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
++..++.+++.... .+ . . +..+ ..+...+..++|+.+++..+++++.++.+++.|||+..
T Consensus 376 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 455 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSS 455 (529)
T ss_pred CCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccc
Confidence 77788999886421 10 0 0 1111 12334467888999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
+|.. ..+.+..+.+++.. .|.+ =+++.++.+....+|+.+++|+.
T Consensus 456 LD~~-------~~~~l~~~l~~~~~~~~~t---------------------------vi~vsHd~~~~~~~~d~i~~l~~ 501 (529)
T PRK15134 456 LDKT-------VQAQILALLKSLQQKHQLA---------------------------YLFISHDLHVVRALCHQVIVLRQ 501 (529)
T ss_pred cCHH-------HHHHHHHHHHHHHHhhCCE---------------------------EEEEeCCHHHHHHhcCeEEEEEC
Confidence 9983 23333344444332 1333 34444444444456777777777
Q ss_pred CCcccHHHHHHHhc
Q 006782 257 TRPVTVDEIKAVMS 270 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~ 270 (631)
++.+..+...+++.
T Consensus 502 G~i~~~~~~~~~~~ 515 (529)
T PRK15134 502 GEVVEQGDCERVFA 515 (529)
T ss_pred CEEEEEcCHHHHhc
Confidence 76554444445544
No 237
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=5.2e-15 Score=153.79 Aligned_cols=192 Identities=12% Similarity=0.110 Sum_probs=132.6
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc--------cc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------SR 106 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~--------~~ 106 (631)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|+|++ | ..|.|.++|.... ..
T Consensus 25 ~nl~~~~~~~~il~~vs~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (276)
T PRK14271 25 VNLTLGFAGKTVLDQVSMGFPARA---VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRR 101 (276)
T ss_pred eeEEEEECCEEEeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhh
Confidence 445555566789999999999999 99999999999999999999998 4 5899999986532 23
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc--c--c--c-----------cccc-----ccccccccccCceeeeecCccEEEE
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE--G--K--A-----------VQVP-----IYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--g--~--~-----------I~~P-----vyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
.++|+||++.+|+ .++.+++..... . . . .... ..+......++|+.+++..++.++.
T Consensus 102 ~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~ 180 (276)
T PRK14271 102 RVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV 180 (276)
T ss_pred heEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 5789999999887 789998864321 0 0 0 0011 1122234577889999999999999
Q ss_pred eechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCC
Q 006782 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (631)
Q Consensus 165 EGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (631)
++.+++.|||+..+|.. ..+.+.++.+.+.+ +.+=+++.++.+..
T Consensus 181 ~p~lllLDEPt~~LD~~-------~~~~l~~~L~~~~~----------------------------~~tiiivsH~~~~~ 225 (276)
T PRK14271 181 NPEVLLLDEPTSALDPT-------TTEKIEEFIRSLAD----------------------------RLTVIIVTHNLAQA 225 (276)
T ss_pred CCCEEEEcCCcccCCHH-------HHHHHHHHHHHHhc----------------------------CCEEEEEeCCHHHH
Confidence 99999999999999973 11122222222111 11234444555444
Q ss_pred CCCCCceeeeccCCcccHHHHHHHhcc
Q 006782 245 TGFQNPTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 245 ~~~~n~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
...++.+++|+.+..+..+...+++..
T Consensus 226 ~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 226 ARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 566778888887776655555555543
No 238
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.55 E-value=3.2e-15 Score=152.53 Aligned_cols=136 Identities=16% Similarity=0.073 Sum_probs=100.0
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcc-----cc-----------
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-----DS----------- 104 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~-----~~----------- 104 (631)
++++.++...++++++|.+++|+ +++|+|+||||||||+++|+|++ |..|.|.++|.. ..
T Consensus 8 ~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 84 (253)
T TIGR02323 8 GLSKSYGGGKGCRDVSFDLYPGE---VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLM 84 (253)
T ss_pred eeEEEeCCceEeecceEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhh
Confidence 33444455568999999999999 89999999999999999999999 899999999854 21
Q ss_pred ccccccccCCCCC--CchhhHHHHHHHh----hc---c----------ccccc--cccccccccccCceeeeecCccEEE
Q 006782 105 SRIIDGNFDDPRL--TDYDTLLENIRGL----KE---G----------KAVQV--PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 105 ~~~i~~vfq~p~l--~d~~tl~e~L~~L----~~---g----------~~I~~--Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
.+.+++++|++.. +...++.+++... .. . ..... ...+......++|+.+++..+++++
T Consensus 85 ~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~ 164 (253)
T TIGR02323 85 RTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLV 164 (253)
T ss_pred hcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHh
Confidence 1247889998742 3333455554320 00 0 00111 1233344567888999999999999
Q ss_pred EeechhccccccCCCcE
Q 006782 164 IEGIYALSEKLRPLIDL 180 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDl 180 (631)
.++.+++.|||++.+|.
T Consensus 165 ~~p~vlllDEP~~~LD~ 181 (253)
T TIGR02323 165 TRPRLVFMDEPTGGLDV 181 (253)
T ss_pred cCCCEEEEcCCCccCCH
Confidence 99999999999999997
No 239
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.55 E-value=5.6e-15 Score=148.64 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=105.9
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFD 113 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq 113 (631)
++++.++...+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... ...++++||
T Consensus 12 ~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 88 (225)
T PRK10247 12 NVGYLAGDAKILNNISFSLRAGE---FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQ 88 (225)
T ss_pred ccEEeeCCceeeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEec
Confidence 34444455679999999999999 99999999999999999999998 89999999986432 245789999
Q ss_pred CCCCCchhhHHHHHHHhhc--cc-----c-------cccc--ccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 114 DPRLTDYDTLLENIRGLKE--GK-----A-------VQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--g~-----~-------I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
++.+++. ++.+++..... +. . +... ..+......++|+.+++..++.++.++.+++.|||+..
T Consensus 89 ~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 167 (225)
T PRK10247 89 TPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSA 167 (225)
T ss_pred ccccccc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9988874 89998863210 10 0 1111 12333456777889999999999999999999999999
Q ss_pred CcEE
Q 006782 178 IDLR 181 (631)
Q Consensus 178 lDlk 181 (631)
+|..
T Consensus 168 LD~~ 171 (225)
T PRK10247 168 LDES 171 (225)
T ss_pred CCHH
Confidence 9973
No 240
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.55 E-value=5.4e-15 Score=165.26 Aligned_cols=156 Identities=15% Similarity=0.087 Sum_probs=117.0
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C--CceEEEECCcccc--------cccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS--------SRIIDG 110 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p--~~G~I~lDg~~~~--------~~~i~~ 110 (631)
++++.++...+++++||.+.+|+ ++||+||||||||||+++|+|++ | +.|.|.++|.... ...++|
T Consensus 6 ~l~~~~~~~~il~~isl~i~~Ge---~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (500)
T TIGR02633 6 GIVKTFGGVKALDGIDLEVRPGE---CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVI 82 (500)
T ss_pred eEEEEeCCeEeecceEEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEE
Confidence 34444555679999999999999 99999999999999999999998 4 6899999986432 135899
Q ss_pred ccCCCCCCchhhHHHHHHHhhc----c-----cc-----------cccccc--ccccccccCceeeeecCccEEEEeech
Q 006782 111 NFDDPRLTDYDTLLENIRGLKE----G-----KA-----------VQVPIY--DFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~----g-----~~-----------I~~Pvy--d~~~~~rs~~~~~~v~~a~VLIvEGi~ 168 (631)
+||++.+++..++.+++..... + .. ...+.+ +...+..++|+.+++..+++++.++.+
T Consensus 83 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~l 162 (500)
T TIGR02633 83 IHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARL 162 (500)
T ss_pred EeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 9999988888899998864211 0 00 011111 223456788999999999999999999
Q ss_pred hccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 169 lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
++.|||+..+|.. ....+..+.+++.+.|.++
T Consensus 163 llLDEPt~~LD~~-------~~~~l~~~l~~l~~~g~tv 194 (500)
T TIGR02633 163 LILDEPSSSLTEK-------ETEILLDIIRDLKAHGVAC 194 (500)
T ss_pred EEEeCCCCCCCHH-------HHHHHHHHHHHHHhCCCEE
Confidence 9999999999983 3344445555554445543
No 241
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.54 E-value=5.3e-15 Score=152.93 Aligned_cols=128 Identities=22% Similarity=0.252 Sum_probs=99.8
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------ccccccccCCCC--
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPR-- 116 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~vfq~p~-- 116 (631)
..++++++|.+.+|+ +++|+|+||||||||+++|+|++ |..|.|.++|.... .+.++|+||++.
T Consensus 25 ~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGE---TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 679999999999999 89999999999999999999998 89999999997432 245889999973
Q ss_pred CCchhhHHHHHHHhhc---c--c------------cccc--cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 117 LTDYDTLLENIRGLKE---G--K------------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 117 l~d~~tl~e~L~~L~~---g--~------------~I~~--Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+++..++.+++..... + . .... ...+......++|+.+++..+++++.++.+++.|||+..
T Consensus 102 ~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~ 181 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSN 181 (268)
T ss_pred cCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 4445667776532110 0 0 0111 123344456788899999999999999999999999999
Q ss_pred CcE
Q 006782 178 IDL 180 (631)
Q Consensus 178 lDl 180 (631)
+|.
T Consensus 182 LD~ 184 (268)
T PRK10419 182 LDL 184 (268)
T ss_pred cCH
Confidence 997
No 242
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=7.6e-15 Score=151.93 Aligned_cols=189 Identities=15% Similarity=0.136 Sum_probs=129.1
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------ccc
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------SRI 107 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~~~ 107 (631)
+++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ | ..|.|.++|.... .+.
T Consensus 31 l~~~~~~~~il~~vs~~i~~Ge---~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~ 107 (272)
T PRK14236 31 LNLFYGDKQALFDISMRIPKNR---VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRR 107 (272)
T ss_pred EEEEECCeeEeeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhcc
Confidence 3344445679999999999999 99999999999999999999997 3 6899999986532 245
Q ss_pred cccccCCCCCCchhhHHHHHHHhhc--c---cc-----cc-------cc-----ccccccccccCceeeeecCccEEEEe
Q 006782 108 IDGNFDDPRLTDYDTLLENIRGLKE--G---KA-----VQ-------VP-----IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (631)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~~--g---~~-----I~-------~P-----vyd~~~~~rs~~~~~~v~~a~VLIvE 165 (631)
++|++|++.+|+. ++.+++..... + .. +. .. ..+......++|+.+++..++.++.+
T Consensus 108 i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~ 186 (272)
T PRK14236 108 VGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIE 186 (272)
T ss_pred EEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCC
Confidence 7899999988885 99999864211 1 00 00 00 11223345677899999999999999
Q ss_pred echhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCC
Q 006782 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFT 245 (631)
Q Consensus 166 Gi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~ 245 (631)
+.+++.|||+..+|.. ....+..+.+++.+ + .+=+++.++.+-..
T Consensus 187 p~lllLDEPt~gLD~~-------~~~~l~~~L~~~~~-~---------------------------~tiiivtH~~~~~~ 231 (272)
T PRK14236 187 PEVLLLDEPTSALDPI-------STLKIEELITELKS-K---------------------------YTIVIVTHNMQQAA 231 (272)
T ss_pred CCEEEEeCCcccCCHH-------HHHHHHHHHHHHHh-C---------------------------CeEEEEeCCHHHHH
Confidence 9999999999999973 22222222222211 1 12344444443334
Q ss_pred CCCCceeeeccCCcccHHHHHHHhc
Q 006782 246 GFQNPTYILKSTRPVTVDEIKAVMS 270 (631)
Q Consensus 246 ~~~n~v~iLKs~~~v~~~~Ik~vL~ 270 (631)
..++.+++|+.+..+..+...+++.
T Consensus 232 ~~~d~i~~l~~G~i~~~g~~~~~~~ 256 (272)
T PRK14236 232 RVSDYTAFMYMGKLVEYGDTDTLFT 256 (272)
T ss_pred hhCCEEEEEECCEEEecCCHHHHhc
Confidence 5678888888877655555555544
No 243
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.54 E-value=3.9e-15 Score=145.57 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=100.4
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---------ccccccccCCCC--
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDGNFDDPR-- 116 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---------~~~i~~vfq~p~-- 116 (631)
...+++++||.+.+|+ ++||+||||||||||+++|++.+ |+.|.|.++|.... .+.+++++|++.
T Consensus 4 ~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGE---VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 3468999999999999 99999999999999999999998 89999999986432 135789999984
Q ss_pred CCchhhHHHHHHHhhc--cc-------c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 117 LTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 117 l~d~~tl~e~L~~L~~--g~-------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
.+ ..++.+++..... +. . +.. +..+...+..++|+.+++..+++++.++.+++.|||+..+|
T Consensus 81 ~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 159 (190)
T TIGR01166 81 LF-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159 (190)
T ss_pred cc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 44 3588888864211 10 0 011 12333445677889999999999999999999999999999
Q ss_pred E
Q 006782 180 L 180 (631)
Q Consensus 180 l 180 (631)
.
T Consensus 160 ~ 160 (190)
T TIGR01166 160 P 160 (190)
T ss_pred H
Confidence 7
No 244
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.54 E-value=7.4e-15 Score=165.45 Aligned_cols=148 Identities=16% Similarity=0.196 Sum_probs=109.5
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc-----------cccccccc
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-----------SRIIDGNF 112 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~-----------~~~i~~vf 112 (631)
..++++|+|.+.+|+ ++||+||||||||||+++|++++ | +.|.|.++|.... .+.++++|
T Consensus 22 ~~~l~~isl~i~~Ge---~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~ 98 (529)
T PRK15134 22 RTVVNDVSLQIEAGE---TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIF 98 (529)
T ss_pred eeeeeceEEEEeCCC---EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEe
Confidence 579999999999999 99999999999999999999998 4 5899999986431 13589999
Q ss_pred CCCC--CCchhhHHHHHHHhh---ccc--------------ccccc----ccccccccccCceeeeecCccEEEEeechh
Q 006782 113 DDPR--LTDYDTLLENIRGLK---EGK--------------AVQVP----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 113 q~p~--l~d~~tl~e~L~~L~---~g~--------------~I~~P----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
|++. +++..++.+++.... .+. .+..+ ..+...++.++|+.+++..+++++.++.++
T Consensus 99 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~ll 178 (529)
T PRK15134 99 QEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELL 178 (529)
T ss_pred cCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 9975 555667777765321 110 01111 123445678889999999999999999999
Q ss_pred ccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCH
Q 006782 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (631)
Q Consensus 170 L~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~ 207 (631)
+.|||+..+|.. ..+.+..+.+++.. .|.++
T Consensus 179 llDEPt~~LD~~-------~~~~l~~~l~~l~~~~g~tv 210 (529)
T PRK15134 179 IADEPTTALDVS-------VQAQILQLLRELQQELNMGL 210 (529)
T ss_pred EEcCCCCccCHH-------HHHHHHHHHHHHHHhcCCeE
Confidence 999999999983 33344445555433 25443
No 245
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=5.1e-15 Score=157.86 Aligned_cols=189 Identities=14% Similarity=0.169 Sum_probs=136.0
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC------CCceEEEECCcccc---------cccccccc
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---------SRIIDGNF 112 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll------p~~G~I~lDg~~~~---------~~~i~~vf 112 (631)
+...+|++++|.+.+|+ ++||+|+||||||||+++|+++. |+.|.|.+||.... ...++++|
T Consensus 93 ~~~~~L~~is~~I~~Ge---~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~ 169 (329)
T PRK14257 93 RTKHVLHDLNLDIKRNK---VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169 (329)
T ss_pred CCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEe
Confidence 34568999999999999 89999999999999999999997 25899999998643 24588999
Q ss_pred CCCCCCchhhHHHHHHHhhc--c---cc------------cccc-----ccccccccccCceeeeecCccEEEEeechhc
Q 006782 113 DDPRLTDYDTLLENIRGLKE--G---KA------------VQVP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~--g---~~------------I~~P-----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL 170 (631)
|+|.+|. .++.+|+..... + .. ...+ ..+......++|+.+++..+++++.++.+++
T Consensus 170 q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlL 248 (329)
T PRK14257 170 QKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLL 248 (329)
T ss_pred cCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999886 689999874221 0 00 0000 1223334577889999999999999999999
Q ss_pred cccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCc
Q 006782 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNP 250 (631)
Q Consensus 171 ~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~ 250 (631)
.||++..+|.. ....+....+.+.. ..+=++|.++.+....++++
T Consensus 249 LDEPts~LD~~-------~~~~i~~~i~~l~~----------------------------~~Tii~iTH~l~~i~~~~Dr 293 (329)
T PRK14257 249 MDEPTSALDPI-------ATAKIEELILELKK----------------------------KYSIIIVTHSMAQAQRISDE 293 (329)
T ss_pred EeCCcccCCHH-------HHHHHHHHHHHHhc----------------------------CCEEEEEeCCHHHHHHhCCE
Confidence 99999999973 11122222222211 12344555555444456788
Q ss_pred eeeeccCCcccHHHHHHHhcccccc
Q 006782 251 TYILKSTRPVTVDEIKAVMSKEHTE 275 (631)
Q Consensus 251 v~iLKs~~~v~~~~Ik~vL~~~~~~ 275 (631)
+++|+.+..+..+...+++..+...
T Consensus 294 iivl~~G~i~e~g~~~~l~~~~~~~ 318 (329)
T PRK14257 294 TVFFYQGWIEEAGETKTIFIHPKNK 318 (329)
T ss_pred EEEEECCEEEEeCCHHHHhcCCCcH
Confidence 8999999888888888888765443
No 246
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.54 E-value=5e-15 Score=151.63 Aligned_cols=128 Identities=17% Similarity=0.254 Sum_probs=97.8
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C----CceEEEECCcccc-----ccccccccCCCC-CC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDS-----SRIIDGNFDDPR-LT 118 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p----~~G~I~lDg~~~~-----~~~i~~vfq~p~-l~ 118 (631)
..+++++||.+.+|+ ++||+|+||||||||+++|+|++ | +.|.|.++|.... .+.++|+||++. .|
T Consensus 16 ~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~ 92 (254)
T PRK10418 16 QPLVHGVSLTLQRGR---VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAF 92 (254)
T ss_pred cceecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCcccc
Confidence 468999999999999 99999999999999999999998 7 8899999987532 245889999975 23
Q ss_pred -chhhHHHHHHHhh--ccc------------ccccc----ccccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 119 -DYDTLLENIRGLK--EGK------------AVQVP----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 119 -d~~tl~e~L~~L~--~g~------------~I~~P----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
+..++.+++.... .+. .+... ..+......++|+.+++..+++++.++.+++.||++..+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD 172 (254)
T PRK10418 93 NPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172 (254)
T ss_pred CccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 3345555543211 010 01111 1233445678889999999999999999999999999999
Q ss_pred E
Q 006782 180 L 180 (631)
Q Consensus 180 l 180 (631)
.
T Consensus 173 ~ 173 (254)
T PRK10418 173 V 173 (254)
T ss_pred H
Confidence 7
No 247
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.54 E-value=7.1e-15 Score=163.95 Aligned_cols=184 Identities=10% Similarity=0.092 Sum_probs=125.0
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------cccccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNF 112 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vf 112 (631)
+++++.++...+|+++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.+++.... .+.++++|
T Consensus 7 ~~l~~~~~~~~il~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 83 (490)
T PRK10938 7 SQGTFRLSDTKTLQLPSLTLNAGD---SWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEW 83 (490)
T ss_pred EeEEEEcCCeeecccceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceec
Confidence 445555666679999999999999 89999999999999999999998 89999999875321 13478889
Q ss_pred CCCCC--C-c-----hhhHHHHHHHhhc--------cccccc-cccccccccccCceeeeecCccEEEEeechhcccccc
Q 006782 113 DDPRL--T-D-----YDTLLENIRGLKE--------GKAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (631)
Q Consensus 113 q~p~l--~-d-----~~tl~e~L~~L~~--------g~~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~ 175 (631)
|++.. + . ..++.+++..... -..+.. ...+...+..++|+++++..+++++.++.+++.|||+
T Consensus 84 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (490)
T PRK10938 84 QRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPF 163 (490)
T ss_pred cCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 87643 1 1 2455555421000 001111 1234555678899999999999999999999999999
Q ss_pred CCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeec
Q 006782 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILK 255 (631)
Q Consensus 176 ~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLK 255 (631)
..+|.. ....+..+.+++.+.|. +=+++.++.+....+|+.+++|+
T Consensus 164 ~~LD~~-------~~~~l~~~l~~~~~~g~---------------------------tvii~tH~~~~~~~~~d~v~~l~ 209 (490)
T PRK10938 164 DGLDVA-------SRQQLAELLASLHQSGI---------------------------TLVLVLNRFDEIPDFVQFAGVLA 209 (490)
T ss_pred ccCCHH-------HHHHHHHHHHHHHhcCC---------------------------eEEEEeCCHHHHHhhCCEEEEEE
Confidence 999973 22233333333322232 23445555554456677777777
Q ss_pred cCCccc
Q 006782 256 STRPVT 261 (631)
Q Consensus 256 s~~~v~ 261 (631)
.++.+.
T Consensus 210 ~G~i~~ 215 (490)
T PRK10938 210 DCTLAE 215 (490)
T ss_pred CCEEEE
Confidence 766443
No 248
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=7.4e-15 Score=148.69 Aligned_cols=148 Identities=19% Similarity=0.262 Sum_probs=112.3
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCCCC
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPR 116 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~p~ 116 (631)
+++.++.. ++++++|.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.++|.+.. .+.+++++|++.
T Consensus 6 l~~~~~~~-~l~~is~~i~~Ge---~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~ 81 (235)
T cd03299 6 LSKDWKEF-KLKNVSLEVERGD---YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYA 81 (235)
T ss_pred EEEEeCCc-eeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCc
Confidence 33444433 7999999999999 89999999999999999999998 89999999997542 246889999999
Q ss_pred CCchhhHHHHHHHhhccc----------------cccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 117 LTDYDTLLENIRGLKEGK----------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 117 l~d~~tl~e~L~~L~~g~----------------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
+++..++.+++....... .+.. +..+...+..++|+.+++..++.++..+.+++.|||+..+|
T Consensus 82 ~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD 161 (235)
T cd03299 82 LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALD 161 (235)
T ss_pred cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCC
Confidence 898889999886422100 0001 11233345677889999999999999999999999999999
Q ss_pred EEEEEEcChhhHHHHHHHHHHH
Q 006782 180 LRVSVTGGVHFDLVKRVFRDIQ 201 (631)
Q Consensus 180 lkIfVdad~d~rLiRRI~RDv~ 201 (631)
.. ....++.+.+++.
T Consensus 162 ~~-------~~~~l~~~l~~~~ 176 (235)
T cd03299 162 VR-------TKEKLREELKKIR 176 (235)
T ss_pred HH-------HHHHHHHHHHHHH
Confidence 83 3444555555543
No 249
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.54 E-value=3e-15 Score=151.23 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=100.3
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc--cccccccCCCCCCchhhHHHHHHH
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--RIIDGNFDDPRLTDYDTLLENIRG 129 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~--~~i~~vfq~p~l~d~~tl~e~L~~ 129 (631)
++++||.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|..... ...++++|++.+++..++.+++..
T Consensus 1 l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGE---FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 478999999999 99999999999999999999999 899999999975432 234789999999888899999865
Q ss_pred hh----ccc---c----c-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 130 LK----EGK---A----V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 130 L~----~g~---~----I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.. .+. . + .. ...+......++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 147 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCH
Confidence 31 110 0 0 01 112333456788899999999999999999999999999997
No 250
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.54 E-value=2.1e-15 Score=152.03 Aligned_cols=126 Identities=18% Similarity=0.279 Sum_probs=97.3
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C----CceEEEECCcccc-----ccccccccCCCC--CCc
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDS-----SRIIDGNFDDPR--LTD 119 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p----~~G~I~lDg~~~~-----~~~i~~vfq~p~--l~d 119 (631)
++++++|.+++|+ +++|+||||||||||+++|+|++ | +.|.|.++|.... .+.+++++|++. +++
T Consensus 1 ~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGE---VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 4789999999999 99999999999999999999999 7 7999999996532 246889999985 344
Q ss_pred hhhHHHHHHHhhc--cc-c-------------cccc----ccccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 120 YDTLLENIRGLKE--GK-A-------------VQVP----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 120 ~~tl~e~L~~L~~--g~-~-------------I~~P----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
..++.+++..... +. . ...+ ..+......++|+.+++..+++++.++.+++.|||+..+|
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 5677776643211 10 0 0111 1233345677889999999999999999999999999999
Q ss_pred E
Q 006782 180 L 180 (631)
Q Consensus 180 l 180 (631)
.
T Consensus 158 ~ 158 (230)
T TIGR02770 158 V 158 (230)
T ss_pred H
Confidence 7
No 251
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.54 E-value=9.5e-15 Score=149.92 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=101.3
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d 119 (631)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.+++. ..++|+||++.+++
T Consensus 8 ~~l~~~~~~~~vl~~vs~~i~~Ge---~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~----~~i~~v~q~~~~~~ 80 (251)
T PRK09544 8 ENVSVSFGQRRVLSDVSLELKPGK---ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK----LRIGYVPQKLYLDT 80 (251)
T ss_pred eceEEEECCceEEEeEEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc----cCEEEecccccccc
Confidence 344455555679999999999999 89999999999999999999998 89999999862 35889999987665
Q ss_pred h--hhHHHHHHHhhcc--c-------cccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 120 Y--DTLLENIRGLKEG--K-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 120 ~--~tl~e~L~~L~~g--~-------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
. .++.+++...... . .+.. +..+......++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 153 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 4 3555554321000 0 0111 112334456778899999999999999999999999999997
No 252
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.1e-14 Score=148.44 Aligned_cols=136 Identities=17% Similarity=0.213 Sum_probs=104.8
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC---C---CceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll---p---~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ | +.|.|.+||.... .
T Consensus 7 ~~v~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14266 7 ENLNTYFDDAHILKNVNLDIPKNS---VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELR 83 (250)
T ss_pred EeEEEEeCCeEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHh
Confidence 344444455679999999999999 99999999999999999999975 3 7899999997532 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--c----cccc-----------c-----cccccccccccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G----KAVQ-----------V-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g----~~I~-----------~-----Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
+.++|++|++.+|+. ++.+++..... + .... . +..+......++|+.+++..++.++
T Consensus 84 ~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 162 (250)
T PRK14266 84 KKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162 (250)
T ss_pred hheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 358999999998874 88988864321 1 0000 0 1122334556778999999999999
Q ss_pred EeechhccccccCCCcE
Q 006782 164 IEGIYALSEKLRPLIDL 180 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDl 180 (631)
..+.+++.||++..+|.
T Consensus 163 ~~p~llllDEP~~gLD~ 179 (250)
T PRK14266 163 VSPEVILMDEPCSALDP 179 (250)
T ss_pred cCCCEEEEcCCCccCCH
Confidence 99999999999999997
No 253
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.54 E-value=7.8e-15 Score=148.24 Aligned_cols=128 Identities=22% Similarity=0.288 Sum_probs=100.7
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (631)
..++++++|.+++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++|++|++.+++ .
T Consensus 16 ~~~l~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGK---TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCC---EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 468999999999999 99999999999999999999998 89999999996432 135889999988776 5
Q ss_pred hHHHHHHHhhccc---cc-------c-------cc-----ccccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 122 TLLENIRGLKEGK---AV-------Q-------VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 122 tl~e~L~~L~~g~---~I-------~-------~P-----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
++.+++....... .+ . .| ..+...+..++|+.+++..++.++.++.+++.|||+..+|
T Consensus 92 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD 171 (238)
T cd03249 92 TIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALD 171 (238)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 8888886421110 00 0 00 0112234667888999999999999999999999999999
Q ss_pred EE
Q 006782 180 LR 181 (631)
Q Consensus 180 lk 181 (631)
..
T Consensus 172 ~~ 173 (238)
T cd03249 172 AE 173 (238)
T ss_pred HH
Confidence 83
No 254
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.54 E-value=8.2e-15 Score=145.99 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=101.5
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCCCCCCchhhHHH
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPRLTDYDTLLE 125 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~p~l~d~~tl~e 125 (631)
++.+++|.+.+|+ ++||+|+||||||||+++|+|.+ |+.|.|.++|.... .+.+++++|++.+++..++.+
T Consensus 13 ~~~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGE---IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 4679999999999 99999999999999999999999 89999999997532 245889999999998889999
Q ss_pred HHHHhh-cc--------ccc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 126 NIRGLK-EG--------KAV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 126 ~L~~L~-~g--------~~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++.... .. ..+ .. ...+...+..++|+.+++..++.++.++.+++.|||+..+|.
T Consensus 90 n~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 161 (213)
T TIGR01277 90 NIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDP 161 (213)
T ss_pred HHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 986421 10 000 01 112333456778899999999999999999999999999998
No 255
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.54 E-value=8.7e-15 Score=152.00 Aligned_cols=137 Identities=14% Similarity=0.116 Sum_probs=103.9
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CC--------ceEEEECCccccc-------
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS--------IAVITMDNYNDSS------- 105 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~--------~G~I~lDg~~~~~------- 105 (631)
++++.++...+|+++||.+.+|+ ++||+|+||||||||+++|+|++ |+ .|.|.++|.....
T Consensus 6 nl~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (272)
T PRK13547 6 HLHVARRHRAILRDLSLRIEPGR---VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLA 82 (272)
T ss_pred EEEEEECCEeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHH
Confidence 34444556679999999999999 99999999999999999999998 66 8999999964321
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc------cc-------cc-------ccc-ccccccccccCceeeeecCccEEE-
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE------GK-------AV-------QVP-IYDFKSSSRIGYRTLEVPSSRIVI- 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~------g~-------~I-------~~P-vyd~~~~~rs~~~~~~v~~a~VLI- 163 (631)
+.++++||++..+...++.+++..... +. .+ ..+ ..+....+.++|+.+++..+++++
T Consensus 83 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 162 (272)
T PRK13547 83 RLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQ 162 (272)
T ss_pred hhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 346889999876555789998864211 00 00 011 122334567788899999999999
Q ss_pred --------EeechhccccccCCCcEE
Q 006782 164 --------IEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 164 --------vEGi~lL~dEl~~~lDlk 181 (631)
.++.+++.|||+..+|..
T Consensus 163 ~~~~~~~~~~p~lllLDEPt~~LD~~ 188 (272)
T PRK13547 163 LWPPHDAAQPPRYLLLDEPTAALDLA 188 (272)
T ss_pred cccccccCCCCCEEEEcCccccCCHH
Confidence 489999999999999983
No 256
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.53 E-value=6.5e-15 Score=165.48 Aligned_cols=129 Identities=18% Similarity=0.220 Sum_probs=103.2
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEEC-Ccc---c----------cccccccccC
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD-NYN---D----------SSRIIDGNFD 113 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lD-g~~---~----------~~~~i~~vfq 113 (631)
...+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++ |.. . ..+.++|+||
T Consensus 296 ~~~il~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q 372 (520)
T TIGR03269 296 VVKAVDNVSLEVKEGE---IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQ 372 (520)
T ss_pred CceEEeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEcc
Confidence 3579999999999999 99999999999999999999999 899999995 421 0 1235899999
Q ss_pred CCCCCchhhHHHHHHHhhc----c----cc-------cccc------ccccccccccCceeeeecCccEEEEeechhccc
Q 006782 114 DPRLTDYDTLLENIRGLKE----G----KA-------VQVP------IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~----g----~~-------I~~P------vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
++.+++..++.+++..... . .. +..+ ..+...++.++|+.+++..+++++.++.+++.|
T Consensus 373 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllD 452 (520)
T TIGR03269 373 EYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILD 452 (520)
T ss_pred CcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9988888899999864210 0 00 1111 123445678889999999999999999999999
Q ss_pred cccCCCcE
Q 006782 173 KLRPLIDL 180 (631)
Q Consensus 173 El~~~lDl 180 (631)
||+..+|.
T Consensus 453 EPt~~LD~ 460 (520)
T TIGR03269 453 EPTGTMDP 460 (520)
T ss_pred CCcccCCH
Confidence 99999998
No 257
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.53 E-value=1.2e-14 Score=145.60 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=103.5
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------ccccccccCCCCCC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPRLT 118 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i~~vfq~p~l~ 118 (631)
..+++++||.+++|+ ++||+|+||||||||+++|+|.+ |+.|.|.++|.... .+.++++||++.++
T Consensus 18 ~~il~~vs~~i~~G~---~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGE---IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 679999999999999 99999999999999999999998 89999999987432 24588999999999
Q ss_pred chhhHHHHHHHhhc-ccc----------------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 119 DYDTLLENIRGLKE-GKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 119 d~~tl~e~L~~L~~-g~~----------------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+..++.+++..... ... +.. +..+......++++.+++..++.++.++.+++.|||+..+|.
T Consensus 95 ~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~ 174 (220)
T TIGR02982 95 GFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDS 174 (220)
T ss_pred CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCH
Confidence 88899998864321 100 001 112333345677888999999999999999999999999997
No 258
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.53 E-value=3.6e-15 Score=164.86 Aligned_cols=165 Identities=15% Similarity=0.114 Sum_probs=129.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~v 111 (631)
.++++.+|...+|++|+|.+.+|+ +.|++|.||||||||+|.|+|.+ |+.|.|.+||.... ...+..+
T Consensus 12 ~~i~K~FggV~AL~~v~l~v~~GE---V~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V 88 (500)
T COG1129 12 RGISKSFGGVKALDGVSLTVRPGE---VHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATV 88 (500)
T ss_pred ecceEEcCCceeeccceeEEeCce---EEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEE
Confidence 445566688999999999999999 99999999999999999999999 99999999997432 1457889
Q ss_pred cCCCCCCchhhHHHHHHHhhccc----ccc----------------cc-ccccccccccCceeeeecCccEEEEeechhc
Q 006782 112 FDDPRLTDYDTLLENIRGLKEGK----AVQ----------------VP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g~----~I~----------------~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL 170 (631)
||+..+++.+++.+|+..-..-. -+. .. ..+......+.++.+-+..++.+..++.+++
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllI 168 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLI 168 (500)
T ss_pred eechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999996322110 000 00 0122223445567788899999999999999
Q ss_pred cccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006782 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (631)
Q Consensus 171 ~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~ 215 (631)
.|||++.|+. .+.+.+-++.|+++.+|.+.--|.|++.
T Consensus 169 lDEPTaaLt~-------~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~ 206 (500)
T COG1129 169 LDEPTAALTV-------KETERLFDLIRRLKAQGVAIIYISHRLD 206 (500)
T ss_pred EcCCcccCCH-------HHHHHHHHHHHHHHhCCCEEEEEcCcHH
Confidence 9999999987 4666777888888888988766666663
No 259
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.2e-14 Score=160.07 Aligned_cols=190 Identities=17% Similarity=0.231 Sum_probs=137.0
Q ss_pred ceeEeecCcee-EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc-------ccccccc
Q 006782 41 DTLSFEKGFFI-VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGNF 112 (631)
Q Consensus 41 ~~ls~~~g~~~-vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~-------~~i~~vf 112 (631)
+++++.++... +|+++||.+++|+ -|||+|+|||||||++|+|.+++-..|.|.+||.+... +.++++|
T Consensus 355 ~dV~f~y~~k~~iL~gvsf~I~kGe---kVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 355 DDVHFSYGPKRKVLKGVSFTIPKGE---KVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred EeeEEEeCCCCceecceeEEecCCC---EEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeC
Confidence 34445566555 9999999999999 59999999999999999999999889999999986542 5689999
Q ss_pred CCCCCCchhhHHHHHHHhhccc---------------c-c-ccc-cccccccc----ccCceeeeecCccEEEEeechhc
Q 006782 113 DDPRLTDYDTLLENIRGLKEGK---------------A-V-QVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYAL 170 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~g~---------------~-I-~~P-vyd~~~~~----rs~~~~~~v~~a~VLIvEGi~lL 170 (631)
|+..+|+ +|+..|+..-...- + + ..| -|+-..++ .+||++|++..+++++-++.+++
T Consensus 432 Qd~~LFn-dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 432 QDSVLFN-DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred Ccccccc-hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE
Confidence 9999987 68888887532210 0 0 111 23333343 57899999999999999999999
Q ss_pred cccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCc
Q 006782 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNP 250 (631)
Q Consensus 171 ~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~ 250 (631)
+||+++.+|-. .+.++++-+.. ...|+|.--|.|+. +. ...++.
T Consensus 511 ~DEaTS~LD~~------TE~~i~~~i~~--~~~~rTvI~IvH~l---------------------------~l-l~~~Dk 554 (591)
T KOG0057|consen 511 LDEATSALDSE------TEREILDMIMD--VMSGRTVIMIVHRL---------------------------DL-LKDFDK 554 (591)
T ss_pred ecCcccccchh------hHHHHHHHHHH--hcCCCeEEEEEecc---------------------------hh-HhcCCE
Confidence 99999999973 33333333322 23455543333322 22 233566
Q ss_pred eeeeccCCcccHHHHHHHhc
Q 006782 251 TYILKSTRPVTVDEIKAVMS 270 (631)
Q Consensus 251 v~iLKs~~~v~~~~Ik~vL~ 270 (631)
+++|+++.....+...+.+.
T Consensus 555 I~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 555 IIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EEEEECCeeEEeccHHHHhh
Confidence 67888888888888888887
No 260
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.53 E-value=9.2e-15 Score=146.88 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=103.0
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC----CceEEEECCcccc----ccccccccCCCCCCch
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp----~~G~I~lDg~~~~----~~~i~~vfq~p~l~d~ 120 (631)
...++++++|.+.+|+ ++||+||||||||||+++|+++++ ..|.|.++|.... .+.++++||++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQ---VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCe---EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3679999999999999 899999999999999999999974 7999999997532 2468899999999988
Q ss_pred hhHHHHHHHhhc--c-c--c-------c---cccc------cccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 121 DTLLENIRGLKE--G-K--A-------V---QVPI------YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 121 ~tl~e~L~~L~~--g-~--~-------I---~~Pv------yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
.++.+++..... . . . + ..+. .+......++|+.+++..++.++.++.+++.|||+..+|
T Consensus 96 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD 175 (226)
T cd03234 96 LTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175 (226)
T ss_pred CcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCC
Confidence 899999874211 1 0 0 0 0111 122234567788899999999999999999999999999
Q ss_pred EE
Q 006782 180 LR 181 (631)
Q Consensus 180 lk 181 (631)
..
T Consensus 176 ~~ 177 (226)
T cd03234 176 SF 177 (226)
T ss_pred HH
Confidence 73
No 261
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=7.2e-15 Score=151.14 Aligned_cols=136 Identities=16% Similarity=0.152 Sum_probs=104.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CC-----ceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~-----~G~I~lDg~~~~---------~ 105 (631)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |+ .|.|.++|.+.. .
T Consensus 11 ~nl~~~~~~~~il~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~ 87 (261)
T PRK14258 11 NNLSFYYDTQKILEGVSMEIYQSK---VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLR 87 (261)
T ss_pred eeEEEEeCCeeEeeceEEEEcCCc---EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhh
Confidence 344445555679999999999999 99999999999999999999998 53 789999886431 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--c--c--c----c-------cc-----cccccccccccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G--K--A----V-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g--~--~----I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
+.++++||++.+++ .++.+++..... + . . + .. +..+......++|+.+++..++.++
T Consensus 88 ~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 166 (261)
T PRK14258 88 RQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALA 166 (261)
T ss_pred ccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 34788999998887 799998864210 0 0 0 0 00 0122333567788999999999999
Q ss_pred EeechhccccccCCCcE
Q 006782 164 IEGIYALSEKLRPLIDL 180 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDl 180 (631)
..+.+++.|||+..+|.
T Consensus 167 ~~p~vllLDEP~~~LD~ 183 (261)
T PRK14258 167 VKPKVLLMDEPCFGLDP 183 (261)
T ss_pred cCCCEEEEeCCCccCCH
Confidence 99999999999999997
No 262
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.53 E-value=8.9e-15 Score=152.34 Aligned_cols=184 Identities=13% Similarity=0.158 Sum_probs=129.8
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc-------ccccccccCCCCCCch
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDY 120 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~ 120 (631)
+...+|+++||.+++|+ ++||+|+||||||||+++|.++++..|.|.+||.... .+.++++||++.+|+
T Consensus 15 ~~~~~l~~isl~I~~Ge---~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~- 90 (275)
T cd03289 15 GGNAVLENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS- 90 (275)
T ss_pred CCCcceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-
Confidence 44568999999999999 8999999999999999999999977899999997532 146899999999987
Q ss_pred hhHHHHHHHhhccc---------ccccc-c-------ccccc----ccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 121 DTLLENIRGLKEGK---------AVQVP-I-------YDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 121 ~tl~e~L~~L~~g~---------~I~~P-v-------yd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
.++.+|+....... .+... . +++.. ...++|+.+++..++.++.++.+++.||++..+|
T Consensus 91 ~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD 170 (275)
T cd03289 91 GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170 (275)
T ss_pred hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 48999985322100 01110 0 11111 1367788999999999999999999999999999
Q ss_pred EEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCc
Q 006782 180 LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRP 259 (631)
Q Consensus 180 lkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~ 259 (631)
.. ..+.+..+.+... ...+=++|.++.+... .|+++++|+.+..
T Consensus 171 ~~-------~~~~l~~~l~~~~----------------------------~~~tii~isH~~~~i~-~~dri~vl~~G~i 214 (275)
T cd03289 171 PI-------TYQVIRKTLKQAF----------------------------ADCTVILSEHRIEAML-ECQRFLVIEENKV 214 (275)
T ss_pred HH-------HHHHHHHHHHHhc----------------------------CCCEEEEEECCHHHHH-hCCEEEEecCCeE
Confidence 83 1111111111110 1123345555554433 3788888988888
Q ss_pred ccHHHHHHHhcc
Q 006782 260 VTVDEIKAVMSK 271 (631)
Q Consensus 260 v~~~~Ik~vL~~ 271 (631)
+..+...+++..
T Consensus 215 ~~~g~~~~l~~~ 226 (275)
T cd03289 215 RQYDSIQKLLNE 226 (275)
T ss_pred eecCCHHHHhhC
Confidence 887777777764
No 263
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.53 E-value=8.4e-15 Score=148.48 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=103.5
Q ss_pred eecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------cccccccc-CCCC
Q 006782 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF-DDPR 116 (631)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vf-q~p~ 116 (631)
..++...+|++++|.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.++|.... .+.++|++ |++.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge---~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~ 105 (236)
T cd03267 29 RKYREVEALKGISFTIEKGE---IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQ 105 (236)
T ss_pred cccCCeeeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccc
Confidence 34566789999999999999 89999999999999999999998 89999999986431 13577887 5566
Q ss_pred CCchhhHHHHHHHhhc--cc---c----c-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 117 LTDYDTLLENIRGLKE--GK---A----V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 117 l~d~~tl~e~L~~L~~--g~---~----I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
+++..++.+++..... +. . + .. +..+......++|+.+++..+++++.++.+++.|||+..+|
T Consensus 106 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 106 LWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 7777788888754321 10 0 0 01 11233345677889999999999999999999999999999
Q ss_pred E
Q 006782 180 L 180 (631)
Q Consensus 180 l 180 (631)
.
T Consensus 186 ~ 186 (236)
T cd03267 186 V 186 (236)
T ss_pred H
Confidence 7
No 264
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.53 E-value=6.9e-15 Score=145.42 Aligned_cols=120 Identities=20% Similarity=0.238 Sum_probs=97.5
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHHHHHHH
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRG 129 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~ 129 (631)
.+++++||.+++|+ +++|+||||||||||+++|+++. |+.|.|.++| .++|++|+|.+++ .++.+++..
T Consensus 19 ~il~~~s~~i~~G~---~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------~i~~~~q~~~l~~-~t~~enl~~ 88 (204)
T cd03250 19 FTLKDINLEVPKGE---LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------SIAYVSQEPWIQN-GTIRENILF 88 (204)
T ss_pred ceeeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------EEEEEecCchhcc-CcHHHHhcc
Confidence 69999999999999 99999999999999999999998 8999999998 5889999998875 588888864
Q ss_pred hhccc--c-------------cc-cc-----ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 130 LKEGK--A-------------VQ-VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 130 L~~g~--~-------------I~-~P-----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
...-. . +. .| ..+......++++.+++..+++++.++.+++.||++..+|.
T Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 89 GKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred CCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 31100 0 00 00 01122345677889999999999999999999999999997
No 265
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=9.7e-15 Score=149.91 Aligned_cols=136 Identities=19% Similarity=0.176 Sum_probs=105.1
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ | +.|.|.++|.... .
T Consensus 11 ~~l~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (259)
T PRK14260 11 KDLSFYYNTSKAIEGISMDIYRNK---VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLR 87 (259)
T ss_pred EEEEEEECCeEeecceEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhh
Confidence 344455555679999999999999 99999999999999999999998 3 3799999986431 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--c----cc----c-------cc-----cccccccccccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G----KA----V-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g----~~----I-------~~-----Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
..++++||++.+|+ .++.+++..... + .. + .. ...+......++|+.+++..+++++
T Consensus 88 ~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 166 (259)
T PRK14260 88 RQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA 166 (259)
T ss_pred hheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 35889999998887 799999864211 0 00 0 00 0122333467778999999999999
Q ss_pred EeechhccccccCCCcE
Q 006782 164 IEGIYALSEKLRPLIDL 180 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDl 180 (631)
.++.+++.|||+..+|.
T Consensus 167 ~~p~lllLDEPt~~LD~ 183 (259)
T PRK14260 167 IKPKVLLMDEPCSALDP 183 (259)
T ss_pred cCCCEEEEcCCCccCCH
Confidence 99999999999999997
No 266
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1.1e-14 Score=164.15 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=104.4
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCch
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDY 120 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~ 120 (631)
++++.++...+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+++. ..+++++|++.+++.
T Consensus 6 ~ls~~~~~~~il~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 6 NITMQFGAKPLFENISVKFGGGN---RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----ERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEeCCcEeEeCCEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----CEEEEEeccCCcCCC
Confidence 34445556679999999999999 89999999999999999999998 89999999873 357899999888887
Q ss_pred hhHHHHHHHhhc-------------c----------------------------c-------cccccc--cccccccccC
Q 006782 121 DTLLENIRGLKE-------------G----------------------------K-------AVQVPI--YDFKSSSRIG 150 (631)
Q Consensus 121 ~tl~e~L~~L~~-------------g----------------------------~-------~I~~Pv--yd~~~~~rs~ 150 (631)
.++.+++..... + . .+..+. .+...+..++
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 158 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP 158 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence 788877653100 0 0 001111 1123456788
Q ss_pred ceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 151 ~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
|+.+++..+++++.++.+++.|||++.+|..
T Consensus 159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~ 189 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDIN 189 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHH
Confidence 9999999999999999999999999999983
No 267
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1.1e-14 Score=152.09 Aligned_cols=136 Identities=17% Similarity=0.156 Sum_probs=105.9
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC------CCceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll------p~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...+|++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .
T Consensus 43 ~~l~~~~~~~~il~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~ 119 (285)
T PRK14254 43 RDLNVFYGDEQALDDVSMDIPENQ---VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALR 119 (285)
T ss_pred EEEEEEECCEeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhh
Confidence 344455555679999999999999 89999999999999999999997 36899999986531 2
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhc--cc------c-------ccc-----cccccccccccCceeeeecCccEEEEe
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK------A-------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--g~------~-------I~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIvE 165 (631)
+.++++||++.+|+. ++.+++..... +. . +.. ...+...+..++|+.+++..+++++.+
T Consensus 120 ~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~ 198 (285)
T PRK14254 120 RRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPD 198 (285)
T ss_pred ccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 357899999988875 88888864211 10 0 000 012333456788899999999999999
Q ss_pred echhccccccCCCcE
Q 006782 166 GIYALSEKLRPLIDL 180 (631)
Q Consensus 166 Gi~lL~dEl~~~lDl 180 (631)
+.+++.||++..+|.
T Consensus 199 p~lLLLDEPts~LD~ 213 (285)
T PRK14254 199 PEVILMDEPASALDP 213 (285)
T ss_pred CCEEEEeCCCCCCCH
Confidence 999999999999997
No 268
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.52 E-value=1e-14 Score=140.11 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=83.8
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc--------ccccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDGNF 112 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~--------~~i~~vf 112 (631)
++++.++...++++++|.+++|+ +++|+|+||||||||+++|+|++ |..|.|.+++..... +.++++|
T Consensus 5 ~l~~~~~~~~vl~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~ 81 (163)
T cd03216 5 GITKRFGGVKALDGVSLSVRRGE---VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVY 81 (163)
T ss_pred EEEEEECCeEEEeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEE
Confidence 34445555679999999999999 89999999999999999999999 899999999864321 1122222
Q ss_pred CCCCCCchhhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
| .++++.+++..++.++.++.+++.|||+..+|.
T Consensus 82 q----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~ 115 (163)
T cd03216 82 Q----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTP 115 (163)
T ss_pred e----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCH
Confidence 2 667788899999999999999999999999997
No 269
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.52 E-value=1.3e-14 Score=164.47 Aligned_cols=134 Identities=16% Similarity=0.118 Sum_probs=107.0
Q ss_pred ceeEeecC-ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCC
Q 006782 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (631)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~ 118 (631)
+++++.++ ...+|+++||.+.+|+ ++||+||||||||||+++|+|.+ |+.|.|.+++. ..++|++|+|.++
T Consensus 10 ~~l~~~y~~~~~il~~vs~~i~~Ge---~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~----~~i~~v~Q~~~~~ 82 (556)
T PRK11819 10 NRVSKVVPPKKQILKDISLSFFPGA---KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG----IKVGYLPQEPQLD 82 (556)
T ss_pred eeEEEEeCCCCeeeeCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----CEEEEEecCCCCC
Confidence 34455555 5779999999999999 89999999999999999999999 89999998742 3589999999998
Q ss_pred chhhHHHHHHHhhc----------------ccc------------------------------------ccccccccccc
Q 006782 119 DYDTLLENIRGLKE----------------GKA------------------------------------VQVPIYDFKSS 146 (631)
Q Consensus 119 d~~tl~e~L~~L~~----------------g~~------------------------------------I~~Pvyd~~~~ 146 (631)
+..++.+++..... ... +..+..+...+
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 162 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT 162 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchh
Confidence 88899998854110 000 00111234446
Q ss_pred cccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 147 ~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
..++|+.+++..+++++.++.+++.|||++.+|..
T Consensus 163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~ 197 (556)
T PRK11819 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197 (556)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChH
Confidence 77889999999999999999999999999999983
No 270
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.52 E-value=4.5e-15 Score=142.72 Aligned_cols=132 Identities=17% Similarity=0.267 Sum_probs=107.7
Q ss_pred eecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCC
Q 006782 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPR 116 (631)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~ 116 (631)
+..+...+|++|||.+.+|+ .++|+||||||||||+|+++.+. |+.|.+.+.|..... ..+.|+-|.|.
T Consensus 11 y~a~~a~il~~isl~v~~Ge---~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa 87 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGE---FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA 87 (223)
T ss_pred hhcCCCeeecceeeeecCCc---eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcc
Confidence 44567789999999999999 79999999999999999999999 899999999975432 56889999999
Q ss_pred CCchhhHHHHHHHh---hccc-----------ccccc--ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 117 LTDYDTLLENIRGL---KEGK-----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 117 l~d~~tl~e~L~~L---~~g~-----------~I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+|. .++.+|+.+. .+.+ ....| ..+......+||+++++...+-+..-+.++|+||+++.+|.
T Consensus 88 Lfg-~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~ 166 (223)
T COG4619 88 LFG-DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDE 166 (223)
T ss_pred ccc-cchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcCh
Confidence 986 5899988642 2211 12223 23444556788999999999999999999999999999997
No 271
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=1.5e-14 Score=145.78 Aligned_cols=128 Identities=23% Similarity=0.241 Sum_probs=100.9
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (631)
..++++++|.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.++|++|++.+++ .
T Consensus 14 ~~~l~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 89 (236)
T cd03253 14 RPVLKDVSFTIPAGK---KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-D 89 (236)
T ss_pred CceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-c
Confidence 568999999999999 89999999999999999999999 89999999986432 135789999998886 5
Q ss_pred hHHHHHHHhhccc---cc-------c-------cc-c----cccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 122 TLLENIRGLKEGK---AV-------Q-------VP-I----YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 122 tl~e~L~~L~~g~---~I-------~-------~P-v----yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
++.+++....... .+ . .| . .+......++|+.+++..+++++.++.+++.|||+..+|
T Consensus 90 tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD 169 (236)
T cd03253 90 TIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALD 169 (236)
T ss_pred hHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 8999886432110 00 0 00 0 111124577788999999999999999999999999999
Q ss_pred EE
Q 006782 180 LR 181 (631)
Q Consensus 180 lk 181 (631)
..
T Consensus 170 ~~ 171 (236)
T cd03253 170 TH 171 (236)
T ss_pred HH
Confidence 83
No 272
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1.2e-14 Score=149.51 Aligned_cols=193 Identities=14% Similarity=0.196 Sum_probs=130.8
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECC------cccc-------cc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN------YNDS-------SR 106 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg------~~~~-------~~ 106 (631)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|.. |..|.|.++| .... ..
T Consensus 14 ~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~ 90 (257)
T PRK14246 14 SRLYLYINDKAILKDITIKIPNNS---IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRK 90 (257)
T ss_pred eeEEEecCCceeEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhc
Confidence 344455567789999999999999 89999999999999999999998 7776666555 3221 24
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhc--c---c-c-----------ccc-----cccccccccccCceeeeecCccEEEE
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLKE--G---K-A-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--g---~-~-----------I~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
.++|++|++.+++..++.+++..... + . . ... ...+...+..++|+.+++..++.++.
T Consensus 91 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~ 170 (257)
T PRK14246 91 EVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL 170 (257)
T ss_pred ceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc
Confidence 57899999998888899999874321 1 0 0 001 11223334567788899999999999
Q ss_pred eechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCC
Q 006782 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (631)
Q Consensus 165 EGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (631)
++.+++.|||+..+|.. ..+.+..+.+.+.. +.+=+++.++.+..
T Consensus 171 ~P~llllDEPt~~LD~~-------~~~~l~~~l~~~~~----------------------------~~tiilvsh~~~~~ 215 (257)
T PRK14246 171 KPKVLLMDEPTSMIDIV-------NSQAIEKLITELKN----------------------------EIAIVIVSHNPQQV 215 (257)
T ss_pred CCCEEEEcCCCccCCHH-------HHHHHHHHHHHHhc----------------------------CcEEEEEECCHHHH
Confidence 99999999999999973 11122222222110 12234444554443
Q ss_pred CCCCCceeeeccCCcccHHHHHHHhcc
Q 006782 245 TGFQNPTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 245 ~~~~n~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
...|+.+++|+.++.+..+...+++.+
T Consensus 216 ~~~~d~v~~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 216 ARVADYVAFLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 456788888887776655555555544
No 273
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.52 E-value=2.1e-14 Score=143.89 Aligned_cols=128 Identities=19% Similarity=0.219 Sum_probs=101.0
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEEC--Cc--ccc-----------ccccccccC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD--NY--NDS-----------SRIIDGNFD 113 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lD--g~--~~~-----------~~~i~~vfq 113 (631)
..++++++|.+.+|+ ++||+|+||||||||+++|++.+ |+.|.|.++ |. ... .+.+++++|
T Consensus 21 ~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q 97 (224)
T TIGR02324 21 LPVLKNVSLTVNAGE---CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ 97 (224)
T ss_pred eEEEecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEec
Confidence 468999999999999 99999999999999999999998 889999997 31 211 135789999
Q ss_pred CCCCCchhhHHHHHHHhh--ccc-------c-------ccccc--cccccccccCceeeeecCccEEEEeechhcccccc
Q 006782 114 DPRLTDYDTLLENIRGLK--EGK-------A-------VQVPI--YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~--~g~-------~-------I~~Pv--yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~ 175 (631)
++.+++..++.+++.... .+. . ...+. .+......++|+.+++..+++++.++.+++.|||+
T Consensus 98 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 177 (224)
T TIGR02324 98 FLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPT 177 (224)
T ss_pred ccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999888888888876421 110 0 01111 13334567788999999999999999999999999
Q ss_pred CCCcE
Q 006782 176 PLIDL 180 (631)
Q Consensus 176 ~~lDl 180 (631)
..+|.
T Consensus 178 ~~LD~ 182 (224)
T TIGR02324 178 ASLDA 182 (224)
T ss_pred ccCCH
Confidence 99997
No 274
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.51 E-value=1.4e-14 Score=168.45 Aligned_cols=136 Identities=18% Similarity=0.199 Sum_probs=107.3
Q ss_pred eeEeecC--ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccc
Q 006782 42 TLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (631)
Q Consensus 42 ~ls~~~g--~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~v 111 (631)
+++|.++ ...+|+++||.+++|+ .|||+|+||||||||+++|+|++ |..|.|.+||.+.. .+.++++
T Consensus 482 ~vsf~y~~~~~~vL~~isl~i~~Ge---~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 558 (710)
T TIGR03796 482 NITFGYSPLEPPLIENFSLTLQPGQ---RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMV 558 (710)
T ss_pred EEEEecCCCCCCcccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEE
Confidence 3344443 3579999999999999 79999999999999999999999 89999999997543 2568999
Q ss_pred cCCCCCCchhhHHHHHHHhhcc----------------ccc-ccc-cccccc----ccccCceeeeecCccEEEEeechh
Q 006782 112 FDDPRLTDYDTLLENIRGLKEG----------------KAV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g----------------~~I-~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
+|++.+|+ .|+++||...... +.+ ..| .++... ...++|+++++..+|+++-++.++
T Consensus 559 ~Q~~~lf~-gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~il 637 (710)
T TIGR03796 559 DQDIFLFE-GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSIL 637 (710)
T ss_pred ecCChhhh-ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999986 5999999643210 001 112 123222 346789999999999999999999
Q ss_pred ccccccCCCcEE
Q 006782 170 LSEKLRPLIDLR 181 (631)
Q Consensus 170 L~dEl~~~lDlk 181 (631)
+.||+++.+|..
T Consensus 638 iLDEptS~LD~~ 649 (710)
T TIGR03796 638 ILDEATSALDPE 649 (710)
T ss_pred EEECccccCCHH
Confidence 999999999973
No 275
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=1.5e-14 Score=149.02 Aligned_cols=135 Identities=16% Similarity=0.187 Sum_probs=103.3
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc-----------
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS----------- 104 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~----------- 104 (631)
.+++.++...++++++|.+.+|+ ++||+|+||||||||+++|+|++ | +.|.|.++|....
T Consensus 21 ~l~~~~~~~~vl~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~ 97 (265)
T PRK14252 21 KLNFYYGGYQALKNINMMVHEKQ---VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEV 97 (265)
T ss_pred EEEEEECCeeeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHH
Confidence 34444445679999999999999 99999999999999999999997 4 6899999875321
Q ss_pred ccccccccCCCCCCchhhHHHHHHHhhc--c--------cc-------ccc-----cccccccccccCceeeeecCccEE
Q 006782 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G--------KA-------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (631)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~--g--------~~-------I~~-----Pvyd~~~~~rs~~~~~~v~~a~VL 162 (631)
.+.++|++|++.+++. ++.+++..... + .. ... +..+......++|+.+++..++.+
T Consensus 98 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 176 (265)
T PRK14252 98 RMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARAL 176 (265)
T ss_pred hccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHH
Confidence 2357899999998885 89998864211 0 00 000 112233345677888999999999
Q ss_pred EEeechhccccccCCCcE
Q 006782 163 IIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 163 IvEGi~lL~dEl~~~lDl 180 (631)
+.++.+++.|||+..+|.
T Consensus 177 ~~~p~llllDEPt~gLD~ 194 (265)
T PRK14252 177 ATDPEILLFDEPTSALDP 194 (265)
T ss_pred HcCCCEEEEeCCCccCCH
Confidence 999999999999999997
No 276
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.51 E-value=1.3e-14 Score=158.43 Aligned_cols=185 Identities=18% Similarity=0.240 Sum_probs=136.8
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCc
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTD 119 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d 119 (631)
..++++++|+|.+.+|+ .+||+||||||||||+|.|.|.. |..|.|.+||.+... +.+||.+|+-.+|+
T Consensus 347 ~~~pil~~isF~l~~G~---~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~ 423 (580)
T COG4618 347 QKKPILKGISFALQAGE---ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD 423 (580)
T ss_pred CCCcceecceeEecCCc---eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecC
Confidence 35689999999999999 89999999999999999999998 899999999975432 67999999999998
Q ss_pred hhhHHHHHHHhhcccc-----------------cccc-ccccccc----cccCceeeeecCccEEEEeechhccccccCC
Q 006782 120 YDTLLENIRGLKEGKA-----------------VQVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 120 ~~tl~e~L~~L~~g~~-----------------I~~P-vyd~~~~----~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
. |+.||+....+..+ +..| -||-..+ ..++|+++++..++.+.=++.++.+|||...
T Consensus 424 G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsN 502 (580)
T COG4618 424 G-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502 (580)
T ss_pred C-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 5 99999987653211 1123 3665554 4678999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccC
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKST 257 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~ 257 (631)
+|-. -+..+ .+-.-.++.+|.+..-|.| .... .+.++.+.+|+.+
T Consensus 503 LD~~------GE~AL-~~Ai~~~k~rG~~vvviaH---------------------------RPs~-L~~~Dkilvl~~G 547 (580)
T COG4618 503 LDSE------GEAAL-AAAILAAKARGGTVVVIAH---------------------------RPSA-LASVDKILVLQDG 547 (580)
T ss_pred cchh------HHHHH-HHHHHHHHHcCCEEEEEec---------------------------CHHH-HhhcceeeeecCC
Confidence 9962 22333 3334445556655333333 2222 2345667778887
Q ss_pred CcccHHHHHHHhcc
Q 006782 258 RPVTVDEIKAVMSK 271 (631)
Q Consensus 258 ~~v~~~~Ik~vL~~ 271 (631)
....++.=.++|.+
T Consensus 548 ~~~~FG~r~eVLa~ 561 (580)
T COG4618 548 RIAAFGPREEVLAK 561 (580)
T ss_pred hHHhcCCHHHHHHH
Confidence 76666665666654
No 277
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.51 E-value=1.1e-14 Score=144.20 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=101.5
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (631)
..++++++|.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .+.++|++|++.+++ .
T Consensus 21 ~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 96 (207)
T cd03369 21 PPVLKNVSFKVKAGE---KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-G 96 (207)
T ss_pred cccccCceEEECCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-c
Confidence 468999999999999 89999999999999999999998 89999999997432 246899999998887 4
Q ss_pred hHHHHHHHhhcccccc-ccc--cccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 122 TLLENIRGLKEGKAVQ-VPI--YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 122 tl~e~L~~L~~g~~I~-~Pv--yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++.+++.......... ... .+......++++.+++..+++++.++.+++.||++..+|.
T Consensus 97 tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 158 (207)
T cd03369 97 TIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDY 158 (207)
T ss_pred cHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCH
Confidence 9999886432100000 000 2333456777889999999999999999999999999997
No 278
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.51 E-value=9e-15 Score=143.90 Aligned_cols=132 Identities=16% Similarity=0.099 Sum_probs=101.7
Q ss_pred ecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc---cccccccCCCCCCchh
Q 006782 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS---RIIDGNFDDPRLTDYD 121 (631)
Q Consensus 46 ~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~---~~i~~vfq~p~l~d~~ 121 (631)
.++...+++ ++|.+++|+ ++||+|+||||||||+++|+|.+ |+.|.|.++|..... +.+++++|++.+++..
T Consensus 10 ~~~~~~l~~-vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T PRK13541 10 NIEQKNLFD-LSITFLPSA---ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEM 85 (195)
T ss_pred EECCcEEEE-EEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccC
Confidence 334445565 999999999 89999999999999999999998 899999999975422 3467888888777778
Q ss_pred hHHHHHHHhhcc--c--cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 122 TLLENIRGLKEG--K--AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 122 tl~e~L~~L~~g--~--~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
++.+++...... . .+ .. +..+......++|+.+++..++.++.++.+++.||++..+|..
T Consensus 86 tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~ 157 (195)
T PRK13541 86 TVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKE 157 (195)
T ss_pred CHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 899988653211 0 00 01 1223334567788899999999999999999999999999983
No 279
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=1.8e-14 Score=148.59 Aligned_cols=135 Identities=18% Similarity=0.171 Sum_probs=104.3
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEECCcccc---------ccc
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------SRI 107 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-----~~G~I~lDg~~~~---------~~~ 107 (631)
.++.++...++++++|.+++|+ ++||+|+||||||||+++|+|++ | ..|.|.++|.+.. .+.
T Consensus 14 ~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 90 (261)
T PRK14263 14 DKIFYGNFMAVRDSHVPIRKNE---ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90 (261)
T ss_pred EEEEeCCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhc
Confidence 3445566789999999999999 99999999999999999999998 4 6899999997532 135
Q ss_pred cccccCCCCCCchhhHHHHHHHhhc--c--c----cc-------cc-c----ccccccccccCceeeeecCccEEEEeec
Q 006782 108 IDGNFDDPRLTDYDTLLENIRGLKE--G--K----AV-------QV-P----IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (631)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~~--g--~----~I-------~~-P----vyd~~~~~rs~~~~~~v~~a~VLIvEGi 167 (631)
++++||++.++. .++.+++..... + . .+ .. + ..+......++|+.+++..++.++.++.
T Consensus 91 i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~ 169 (261)
T PRK14263 91 IGMVFQQPNPFS-MSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPE 169 (261)
T ss_pred eEEEecCCcccc-ccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 789999998874 788898864321 0 0 00 00 0 1112234567788999999999999999
Q ss_pred hhccccccCCCcEE
Q 006782 168 YALSEKLRPLIDLR 181 (631)
Q Consensus 168 ~lL~dEl~~~lDlk 181 (631)
+++.|||+..+|..
T Consensus 170 llllDEPtsgLD~~ 183 (261)
T PRK14263 170 VLLLDEPCSALDPI 183 (261)
T ss_pred EEEEeCCCccCCHH
Confidence 99999999999973
No 280
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.51 E-value=2.4e-14 Score=166.04 Aligned_cols=128 Identities=19% Similarity=0.274 Sum_probs=104.1
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCch
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDY 120 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~ 120 (631)
...+|+++||.+++|+ .|||+|+||||||||+++|+|++ |..|.|.+||.+... +.+++++|++.+|+
T Consensus 465 ~~~vL~~isl~i~~Ge---~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~- 540 (686)
T TIGR03797 465 GPLILDDVSLQIEPGE---FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS- 540 (686)
T ss_pred CccceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-
Confidence 4579999999999999 79999999999999999999999 899999999975432 56899999999987
Q ss_pred hhHHHHHHHhhcc---------------ccc-ccc-cccccc----ccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 121 DTLLENIRGLKEG---------------KAV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 121 ~tl~e~L~~L~~g---------------~~I-~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
.|+++|+.....- +.+ ..| -|+-.. ...++|+++++..+|+++-++.+++.||+++.+|
T Consensus 541 gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD 620 (686)
T TIGR03797 541 GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620 (686)
T ss_pred ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 5899998643210 001 112 122222 2467899999999999999999999999999999
Q ss_pred E
Q 006782 180 L 180 (631)
Q Consensus 180 l 180 (631)
.
T Consensus 621 ~ 621 (686)
T TIGR03797 621 N 621 (686)
T ss_pred H
Confidence 7
No 281
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.51 E-value=9.7e-15 Score=145.70 Aligned_cols=128 Identities=17% Similarity=0.181 Sum_probs=100.8
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (631)
..+++++||.+.+|+ ++||+||||||||||+++|+|.. |+.|.|.++|.... .+.+++++|++.+++ .
T Consensus 17 ~~~l~~i~~~i~~G~---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 92 (220)
T cd03245 17 IPALDNVSLTIRAGE---KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-G 92 (220)
T ss_pred cccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-c
Confidence 468999999999999 99999999999999999999998 89999999996432 135789999998886 5
Q ss_pred hHHHHHHHhhccc---cc-------cc-ccccc-----------ccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 122 TLLENIRGLKEGK---AV-------QV-PIYDF-----------KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 122 tl~e~L~~L~~g~---~I-------~~-Pvyd~-----------~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
++.+++....... .+ .. ...+. .....++|+.+++..+++++.++.+++.|||+..+|
T Consensus 93 tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD 172 (220)
T cd03245 93 TLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD 172 (220)
T ss_pred hHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 8988885421100 00 00 00111 124677889999999999999999999999999999
Q ss_pred EE
Q 006782 180 LR 181 (631)
Q Consensus 180 lk 181 (631)
..
T Consensus 173 ~~ 174 (220)
T cd03245 173 MN 174 (220)
T ss_pred HH
Confidence 84
No 282
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.51 E-value=1.2e-14 Score=148.57 Aligned_cols=126 Identities=12% Similarity=0.116 Sum_probs=99.1
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc-------cccccccCCCCCCchhhHH
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDTLL 124 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~~tl~ 124 (631)
+|+++||.+.+|+ ++||+|+||||||||+++|+|++|..|.|.++|..... +.++|+||++.++...++.
T Consensus 11 ~l~~vsl~i~~Ge---i~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGE---ILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 6999999999999 99999999999999999999998668999999975321 3478999998877778899
Q ss_pred HHHHHhhc-ccc--------------ccc-cccccccccccCceeeeecCccEEEE-------eechhccccccCCCcE
Q 006782 125 ENIRGLKE-GKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVII-------EGIYALSEKLRPLIDL 180 (631)
Q Consensus 125 e~L~~L~~-g~~--------------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIv-------EGi~lL~dEl~~~lDl 180 (631)
+++..... +.. ... ...+...+..++|+.+++..++.++. ++.+++.|||+..+|.
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~ 166 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDV 166 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCH
Confidence 98875321 100 001 11233345677788999999999987 5689999999999997
No 283
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.51 E-value=1.9e-14 Score=161.67 Aligned_cols=137 Identities=20% Similarity=0.185 Sum_probs=104.9
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC---CCceEEEECC------------------
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDN------------------ 100 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll---p~~G~I~lDg------------------ 100 (631)
++++.++...+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+++
T Consensus 5 ~l~~~~~~~~~l~~is~~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~ 81 (520)
T TIGR03269 5 NLTKKFDGKEVLKNISFTIEEGE---VLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEP 81 (520)
T ss_pred EEEEEECCeEeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccc
Confidence 34445556679999999999999 89999999999999999999995 7899998862
Q ss_pred -----ccc-----------------cccccccccCC-CCCCchhhHHHHHHHhhc--cc-------c-------cccc-c
Q 006782 101 -----YND-----------------SSRIIDGNFDD-PRLTDYDTLLENIRGLKE--GK-------A-------VQVP-I 140 (631)
Q Consensus 101 -----~~~-----------------~~~~i~~vfq~-p~l~d~~tl~e~L~~L~~--g~-------~-------I~~P-v 140 (631)
... ..+.++++||+ +.+++..++.+++..... +. . +... .
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 161 (520)
T TIGR03269 82 CPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHR 161 (520)
T ss_pred cccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh
Confidence 100 01347899997 577877888888864211 10 0 0111 1
Q ss_pred cccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 141 yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
.+...+..++|+++++..+++++.++.+++.|||++.+|..
T Consensus 162 ~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~ 202 (520)
T TIGR03269 162 ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQ 202 (520)
T ss_pred hhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHH
Confidence 23445678889999999999999999999999999999983
No 284
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.51 E-value=2e-14 Score=146.48 Aligned_cols=155 Identities=11% Similarity=0.093 Sum_probs=110.7
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh--C-CCceEEEECCccccc------c--cccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS------R--IIDG 110 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l--l-p~~G~I~lDg~~~~~------~--~i~~ 110 (631)
++++.++...+|++++|.+.+|+ ++||+|+||||||||+++|+|+ + |..|.|.++|..... . .+++
T Consensus 12 ~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 88 (252)
T CHL00131 12 NLHASVNENEILKGLNLSINKGE---IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFL 88 (252)
T ss_pred eEEEEeCCEEeeecceeEEcCCc---EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEE
Confidence 34444445679999999999999 8999999999999999999997 4 789999999864321 1 3567
Q ss_pred ccCCCCCCchhhHHHHHHHhhcc-------c----------------ccccc--ccccccc-cccCceeeeecCccEEEE
Q 006782 111 NFDDPRLTDYDTLLENIRGLKEG-------K----------------AVQVP--IYDFKSS-SRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~g-------~----------------~I~~P--vyd~~~~-~rs~~~~~~v~~a~VLIv 164 (631)
++|++.+++..++.+++...... . .+..+ ..+...+ ..++|+.+++..+++++.
T Consensus 89 ~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 168 (252)
T CHL00131 89 AFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALL 168 (252)
T ss_pred EeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHc
Confidence 88998888877777776532110 0 00011 1223333 378889999999999999
Q ss_pred eechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCC
Q 006782 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (631)
Q Consensus 165 EGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s 206 (631)
++.+++.|||+..+|.. ..+.+..+.+.+.+.|.+
T Consensus 169 ~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~~g~t 203 (252)
T CHL00131 169 DSELAILDETDSGLDID-------ALKIIAEGINKLMTSENS 203 (252)
T ss_pred CCCEEEEcCCcccCCHH-------HHHHHHHHHHHHHhCCCE
Confidence 99999999999999973 333344444444433444
No 285
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=1.4e-14 Score=162.26 Aligned_cols=149 Identities=13% Similarity=0.124 Sum_probs=111.8
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-CceEEEECCcccc--------ccccccccCCC---
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYNDS--------SRIIDGNFDDP--- 115 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-~~G~I~lDg~~~~--------~~~i~~vfq~p--- 115 (631)
...+++++||.+++|+ ++||+|+||||||||+++|+|++ | +.|.|.++|.... ...++|++|++
T Consensus 274 ~~~vl~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 350 (506)
T PRK13549 274 HIKRVDDVSFSLRRGE---ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRD 350 (506)
T ss_pred ccccccceeeEEcCCc---EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhC
Confidence 3568999999999999 99999999999999999999998 4 8999999986432 13488999986
Q ss_pred CCCchhhHHHHHHHhh----cc----c------c-------cccc--ccccccccccCceeeeecCccEEEEeechhccc
Q 006782 116 RLTDYDTLLENIRGLK----EG----K------A-------VQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~----~g----~------~-------I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
.+++..++.+++.... .+ . . +... ..+...+..++|+++++..+++++.++.+++.|
T Consensus 351 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLD 430 (506)
T PRK13549 351 GIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILD 430 (506)
T ss_pred CCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 3677778888875310 00 0 0 1111 223344678889999999999999999999999
Q ss_pred cccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 173 El~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
||+..+|.. ..+.+.++.+++.+.|.++
T Consensus 431 EPt~~LD~~-------~~~~l~~~l~~l~~~g~tv 458 (506)
T PRK13549 431 EPTRGIDVG-------AKYEIYKLINQLVQQGVAI 458 (506)
T ss_pred CCCCCcCHh-------HHHHHHHHHHHHHHCCCEE
Confidence 999999984 3444555555555445543
No 286
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=4e-14 Score=145.37 Aligned_cols=184 Identities=17% Similarity=0.192 Sum_probs=130.6
Q ss_pred eceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccc-----------cccccccccCCCCCCchhh
Q 006782 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----------SSRIIDGNFDDPRLTDYDT 122 (631)
Q Consensus 55 ~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~-----------~~~~i~~vfq~p~l~d~~t 122 (631)
+++|..+..+ +.+|-|+|||||||++++|+|+. |+.|.|.++|.-. ..+++||+||+..+|++.+
T Consensus 16 ~a~~~~p~~G---vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARG---ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCc---eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 6777777656 89999999999999999999999 9999999999632 1267999999999999999
Q ss_pred HHHHHHHhhcccc-------cc----ccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhH
Q 006782 123 LLENIRGLKEGKA-------VQ----VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD 191 (631)
Q Consensus 123 l~e~L~~L~~g~~-------I~----~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~r 191 (631)
++.||..-..... +. -|..+......+||++++++..++++-.+-++|.||+...+|.. .-.+-.-
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~---RK~Eilp 169 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP---RKREILP 169 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccc---hhhHHHH
Confidence 9999986443210 00 13345555678999999999999999999999999999999974 1111111
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCcccHHHHHHHhcc
Q 006782 192 LVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 192 LiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
++.|+.+++ .. | -+-+.++.+-.....+.|.+|+++++...+.+.+++..
T Consensus 170 ylERL~~e~---~I----------------------P-----IlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 170 YLERLRDEI---NI----------------------P-----ILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred HHHHHHHhc---CC----------------------C-----EEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 222222111 11 1 12222333322333445557788888888999999987
Q ss_pred ccc
Q 006782 272 EHT 274 (631)
Q Consensus 272 ~~~ 274 (631)
+.+
T Consensus 220 ~~~ 222 (352)
T COG4148 220 PDF 222 (352)
T ss_pred ccc
Confidence 643
No 287
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.50 E-value=2.2e-14 Score=143.80 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=107.5
Q ss_pred CceeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------
Q 006782 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (631)
Q Consensus 32 ~~~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------ 104 (631)
.++++..+...|. ..+...++++++|.+.+|+ ++||+||||||||||+++|+|++ |..|.|.++|....
T Consensus 10 ~~l~~~~l~~~~~-~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 10 GIVKFQNVTFAYP-TRPDTLVLQDVSFTLHPGE---VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKY 85 (226)
T ss_pred ceEEEEEEEEEeC-CCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHH
Confidence 3455555544431 1112358999999999999 89999999999999999999999 89999999986432
Q ss_pred -ccccccccCCCCCCchhhHHHHHHHhhcccc------------c---------cc-cccccccccccCceeeeecCccE
Q 006782 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA------------V---------QV-PIYDFKSSSRIGYRTLEVPSSRI 161 (631)
Q Consensus 105 -~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~------------I---------~~-Pvyd~~~~~rs~~~~~~v~~a~V 161 (631)
.+.+++++|++.+++ .++.+++........ + .. +..+......++|+.+++..++.
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 86 LHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred HHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 245889999998775 588888863211000 0 00 11223345677889999999999
Q ss_pred EEEeechhccccccCCCcEE
Q 006782 162 VIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 162 LIvEGi~lL~dEl~~~lDlk 181 (631)
++..+.+++.|||+..+|..
T Consensus 165 l~~~p~llllDEPt~~LD~~ 184 (226)
T cd03248 165 LIRNPQVLILDEATSALDAE 184 (226)
T ss_pred HhcCCCEEEEeCCcccCCHH
Confidence 99999999999999999983
No 288
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=6.3e-15 Score=174.82 Aligned_cols=184 Identities=18% Similarity=0.262 Sum_probs=135.3
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCch
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDY 120 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~ 120 (631)
...+|+++||.+++|+ .|+|+|||||||||++++|.++. |..|.|.+||.+... ..++.|+|+|.+|+
T Consensus 365 dv~Il~g~sl~i~~G~---~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~- 440 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQ---TVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA- 440 (1228)
T ss_pred cchhhCCeEEEeCCCC---EEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhc-
Confidence 3469999999999999 89999999999999999999999 999999999986543 46899999998776
Q ss_pred hhHHHHHHHhhccc---c-------------c-ccc-ccccccc----cccCceeeeecCccEEEEeechhccccccCCC
Q 006782 121 DTLLENIRGLKEGK---A-------------V-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 121 ~tl~e~L~~L~~g~---~-------------I-~~P-vyd~~~~----~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
.++.||+...+..- . + ..| -|+...+ +.+||++++++.++.++-+|.++|+||+++.|
T Consensus 441 ~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaL 520 (1228)
T KOG0055|consen 441 TTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSAL 520 (1228)
T ss_pred ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCccccc
Confidence 69999998655321 0 0 112 2333322 47889999999999999999999999999999
Q ss_pred cEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCC
Q 006782 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTR 258 (631)
Q Consensus 179 DlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~ 258 (631)
|.. ..+.+....+.. ..|+|.--|.|+.. +.+.||.| ++++.|+
T Consensus 521 D~~-------se~~Vq~ALd~~-~~grTTivVaHRLS-------------tIrnaD~I---------------~v~~~G~ 564 (1228)
T KOG0055|consen 521 DAE-------SERVVQEALDKA-SKGRTTIVVAHRLS-------------TIRNADKI---------------AVMEEGK 564 (1228)
T ss_pred CHH-------HHHHHHHHHHHh-hcCCeEEEEeeehh-------------hhhccCEE---------------EEEECCE
Confidence 973 333333333222 24766555555552 22445655 4566777
Q ss_pred cccHHHHHHHhccc
Q 006782 259 PVTVDEIKAVMSKE 272 (631)
Q Consensus 259 ~v~~~~Ik~vL~~~ 272 (631)
.++.+.-.+.+...
T Consensus 565 IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 565 IVEQGTHDELIALG 578 (1228)
T ss_pred EEEecCHHHHHhcc
Confidence 77767666666543
No 289
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.50 E-value=1.7e-14 Score=138.88 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=97.2
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHHHHHH
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~ 128 (631)
..++++++|.+.+|+ +++|+|+||||||||+++|++.+ |+.|.|.+++. +.++|++|++.++ ..++.+++.
T Consensus 14 ~~~l~~i~l~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~q~~~~~-~~tv~~nl~ 85 (166)
T cd03223 14 RVLLKDLSFEIKPGD---RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLPQRPYLP-LGTLREQLI 85 (166)
T ss_pred CeeeecCeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEECCCCccc-cccHHHHhh
Confidence 468999999999999 89999999999999999999998 89999999874 4689999998765 468999986
Q ss_pred HhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 129 ~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
.. .....++++.+++..+++++.++.+++.|||+..+|..
T Consensus 86 ~~-------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~ 125 (166)
T cd03223 86 YP-------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125 (166)
T ss_pred cc-------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHH
Confidence 42 23567788899999999999999999999999999983
No 290
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.49 E-value=3.5e-14 Score=161.55 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=104.6
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc-------cccccccCCCCCCchh
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYD 121 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~~ 121 (631)
...+|+++||.+++|+ .+||+|+||||||||++.|.+++|..|.|.+||.+... +.+++++|+|.+|+ .
T Consensus 362 ~~~vL~~i~l~i~~G~---~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~ 437 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQ---RIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-G 437 (588)
T ss_pred CCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCC-c
Confidence 3579999999999999 79999999999999999999999889999999975432 46899999999997 4
Q ss_pred hHHHHHHHhhcc---cc-------------c-ccc-cccccc----ccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 122 TLLENIRGLKEG---KA-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 122 tl~e~L~~L~~g---~~-------------I-~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
|+++|+...... +. + ..| -|+-.. ...+||+++++..+|.++-++.+++.||+++.+|
T Consensus 438 TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD 517 (588)
T PRK11174 438 TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLD 517 (588)
T ss_pred CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 999999764221 00 1 012 233322 2467899999999999999999999999999999
Q ss_pred E
Q 006782 180 L 180 (631)
Q Consensus 180 l 180 (631)
.
T Consensus 518 ~ 518 (588)
T PRK11174 518 A 518 (588)
T ss_pred H
Confidence 7
No 291
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.49 E-value=3.6e-14 Score=146.89 Aligned_cols=129 Identities=11% Similarity=0.100 Sum_probs=96.3
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc----cccccccCCCCCC--chh
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS----RIIDGNFDDPRLT--DYD 121 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~----~~i~~vfq~p~l~--d~~ 121 (631)
...+++++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|..... ..++|++|++.+. ...
T Consensus 19 ~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~ 95 (272)
T PRK15056 19 GHTALRDASFTVPGGS---IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPV 95 (272)
T ss_pred CcEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCc
Confidence 3568999999999999 89999999999999999999998 899999999975321 3588999987542 112
Q ss_pred hHHHHHHHhh---------cc-----------ccccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 122 TLLENIRGLK---------EG-----------KAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 122 tl~e~L~~L~---------~g-----------~~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++.+++.... .. ..+.. ...+...+..++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 96 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~ 175 (272)
T PRK15056 96 LVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDV 175 (272)
T ss_pred chhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 3444432100 00 00001 112334456788899999999999999999999999999997
No 292
>PRK08233 hypothetical protein; Provisional
Probab=99.49 E-value=2.7e-13 Score=130.43 Aligned_cols=151 Identities=19% Similarity=0.301 Sum_probs=103.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccccc--ccccccCCC---CCCchhhHHHHHHHhhccccccccc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR--IIDGNFDDP---RLTDYDTLLENIRGLKEGKAVQVPI 140 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~--~i~~vfq~p---~l~d~~tl~e~L~~L~~g~~I~~Pv 140 (631)
+.+|+|.|++|||||||++.|+..++....+.+|+++.... .+.-..... ..++...+.+.+..+..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 75 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAK------- 75 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcC-------
Confidence 46999999999999999999999986667788888753211 111001111 112222233333222211
Q ss_pred cccccccccCceeeeecCccEEEEeechhcc-ccccCCCcEEEEEEcChhhHHHHHHHHHHHHh-CCCHHHHHHHHHhcc
Q 006782 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETV 218 (631)
Q Consensus 141 yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~-dEl~~~lDlkIfVdad~d~rLiRRI~RDv~er-G~s~e~Vi~q~~~~v 218 (631)
...+++++||.+... +++...+|+.|||++|.++++.|++.|+..+. +......+..|...+
T Consensus 76 ----------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 139 (182)
T PRK08233 76 ----------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYA 139 (182)
T ss_pred ----------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 112678899987654 67888999999999999999999998886432 223445567787889
Q ss_pred ccchhhcccCCCCCCeEEEeC
Q 006782 219 YPMYKAFIEPDLQTAHIKIIN 239 (631)
Q Consensus 219 ~P~~~~fIeP~k~~ADiII~N 239 (631)
+|.|.+++++....|+++|.+
T Consensus 140 ~~~y~~~~~~~~~~~~~vId~ 160 (182)
T PRK08233 140 RPLYLEALHTVKPNADIVLDG 160 (182)
T ss_pred HHHHHHHhhcCccCCeEEEcC
Confidence 999999999888889999853
No 293
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.49 E-value=2e-14 Score=180.49 Aligned_cols=191 Identities=12% Similarity=0.011 Sum_probs=136.8
Q ss_pred CceeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------
Q 006782 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (631)
Q Consensus 32 ~~~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------ 104 (631)
+++++..+.+.| ..+...+|++|+|.+++|+ ++||+|+||||||||+++|+|.+ |+.|.|.++|+...
T Consensus 1936 ~~L~v~nLsK~Y--~~~~~~aL~~ISf~I~~GE---i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257 1936 DILRLNELTKVY--SGTSSPAVDRLCVGVRPGE---CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred ceEEEEEEEEEE--CCCCceEEEeeEEEEcCCc---EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHH
Confidence 344444444333 1113679999999999999 99999999999999999999999 99999999997642
Q ss_pred ccccccccCCCCCCchhhHHHHHHHhhc--cc---cc-----------cc-cccccccccccCceeeeecCccEEEEeec
Q 006782 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK---AV-----------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (631)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~--g~---~I-----------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi 167 (631)
.+.++|++|++.+++..++.|++..... +. .+ .. ...+...+..++|+++++..+.+++-++.
T Consensus 2011 r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~ 2090 (2272)
T TIGR01257 2011 HQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090 (2272)
T ss_pred hhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2458999999999999999999975321 10 00 01 11244456788899999999999999999
Q ss_pred hhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCC
Q 006782 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGF 247 (631)
Q Consensus 168 ~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~ 247 (631)
+++.|||+..+|.. ..+.++++.+.+...|.+ =+++.++.+.....
T Consensus 2091 VLLLDEPTsGLDp~-------sr~~l~~lL~~l~~~g~T---------------------------IILtTH~mee~e~l 2136 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQ-------ARRMLWNTIVSIIREGRA---------------------------VVLTSHSMEECEAL 2136 (2272)
T ss_pred EEEEECCCCCCCHH-------HHHHHHHHHHHHHhCCCE---------------------------EEEEeCCHHHHHHh
Confidence 99999999999983 344455555554433433 23333343333456
Q ss_pred CCceeeeccCCccc
Q 006782 248 QNPTYILKSTRPVT 261 (631)
Q Consensus 248 ~n~v~iLKs~~~v~ 261 (631)
|+++++|+.|+.+.
T Consensus 2137 cDrV~IL~~G~i~~ 2150 (2272)
T TIGR01257 2137 CTRLAIMVKGAFQC 2150 (2272)
T ss_pred CCEEEEEECCEEEE
Confidence 77777777765443
No 294
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.49 E-value=2.5e-14 Score=160.41 Aligned_cols=127 Identities=13% Similarity=0.112 Sum_probs=101.3
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccccCCC---CCCc
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDP---RLTD 119 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vfq~p---~l~d 119 (631)
+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|+||++ .+++
T Consensus 278 ~l~~isl~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (510)
T PRK09700 278 KVRDISFSVCRGE---ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFP 354 (510)
T ss_pred cccceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcC
Confidence 7999999999999 89999999999999999999998 89999999986431 13578999974 5777
Q ss_pred hhhHHHHHHHhhc----------c---c-----c-------cccc--ccccccccccCceeeeecCccEEEEeechhccc
Q 006782 120 YDTLLENIRGLKE----------G---K-----A-------VQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 120 ~~tl~e~L~~L~~----------g---~-----~-------I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
..++.+++..... + . . +..+ ..+...+..++|+++++..+++++.++.+++.|
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD 434 (510)
T PRK09700 355 NFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434 (510)
T ss_pred CCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEEC
Confidence 7889888753110 0 0 0 1111 123334678889999999999999999999999
Q ss_pred cccCCCcEE
Q 006782 173 KLRPLIDLR 181 (631)
Q Consensus 173 El~~~lDlk 181 (631)
||+..+|..
T Consensus 435 EPt~~LD~~ 443 (510)
T PRK09700 435 EPTRGIDVG 443 (510)
T ss_pred CCCCCcCHH
Confidence 999999984
No 295
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.49 E-value=3.8e-14 Score=141.55 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=100.5
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------ccccccccCCCCC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPRL 117 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~vfq~p~l 117 (631)
..++++++|.+.+|+ +++|+|+||||||||+++|+|++ |+.|.|.+++.... .+.++|++|++.+
T Consensus 14 ~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (218)
T cd03290 14 LATLSNINIRIPTGQ---LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWL 90 (218)
T ss_pred CcceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcc
Confidence 568999999999999 99999999999999999999998 89999999986421 1357899999988
Q ss_pred CchhhHHHHHHHhhccc--c-------ccc-cc-----------cccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 118 TDYDTLLENIRGLKEGK--A-------VQV-PI-----------YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~g~--~-------I~~-Pv-----------yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
++ .++.+++....... . ... +. .+......++|+.+++..+++++.++.+++.||++.
T Consensus 91 ~~-~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~ 169 (218)
T cd03290 91 LN-ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFS 169 (218)
T ss_pred cc-ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 74 68888886532110 0 000 00 112234677789999999999999999999999999
Q ss_pred CCcE
Q 006782 177 LIDL 180 (631)
Q Consensus 177 ~lDl 180 (631)
.+|.
T Consensus 170 ~LD~ 173 (218)
T cd03290 170 ALDI 173 (218)
T ss_pred ccCH
Confidence 9997
No 296
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.49 E-value=5.5e-14 Score=150.09 Aligned_cols=213 Identities=17% Similarity=0.253 Sum_probs=162.3
Q ss_pred ceeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC------CceEEEECCccccc-
Q 006782 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSS- 105 (631)
Q Consensus 33 ~~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp------~~G~I~lDg~~~~~- 105 (631)
..++.+++..|..+.+...++++|||.+.+|+ ++||+|.||||||..+..+.+++| .+|.|.++|.+...
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GE---tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGE---TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCC---EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 45666777788777889999999999999999 899999999999999999999995 46899999975321
Q ss_pred ----------cccccccCCCC--CCchhhHHHHHHHhhc---c--------------cccccc----ccccccccccCce
Q 006782 106 ----------RIIDGNFDDPR--LTDYDTLLENIRGLKE---G--------------KAVQVP----IYDFKSSSRIGYR 152 (631)
Q Consensus 106 ----------~~i~~vfq~p~--l~d~~tl~e~L~~L~~---g--------------~~I~~P----vyd~~~~~rs~~~ 152 (631)
.+|+++||+|- +.+..++.+.+..... | +.+.+| .++...|+.+||+
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 46899999984 5666677766654221 1 112222 3566678999999
Q ss_pred eeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCC
Q 006782 153 TLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQT 232 (631)
Q Consensus 153 ~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ 232 (631)
.+++-.+-+++.|+.+++.||++-.+|..|-- ..+.|++.+++. .|+
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQa---QIL~Ll~~Lq~~---~gM--------------------------- 209 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQA---QILDLLKELQAE---LGM--------------------------- 209 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHH---HHHHHHHHHHHH---hCc---------------------------
Confidence 99999999999999999999999999985321 122333333332 243
Q ss_pred CeEEEeCCCCCCCCCCCceeeeccCCcccHHHHHHHhccccccccccee
Q 006782 233 AHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETY 281 (631)
Q Consensus 233 ADiII~N~~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~~~f~ 281 (631)
|=+.|.+|....+.+.++||||..+..++.+....+|..+....++...
T Consensus 210 a~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll 258 (534)
T COG4172 210 AILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRKLL 258 (534)
T ss_pred EEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChHHHHHH
Confidence 3455666666678888999999999999999999999988777666555
No 297
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.48 E-value=3.4e-14 Score=160.99 Aligned_cols=132 Identities=16% Similarity=0.105 Sum_probs=105.5
Q ss_pred eEeecC-ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCch
Q 006782 43 LSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDY 120 (631)
Q Consensus 43 ls~~~g-~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~ 120 (631)
+++.++ ...+++++||.+++|+ ++||+|+||||||||+++|+|++ |+.|.|.+++. ..++|++|++.+++.
T Consensus 10 ls~~~~~~~~il~~is~~i~~Ge---~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~v~Q~~~~~~~ 82 (552)
T TIGR03719 10 VSKVVPPKKEILKDISLSFFPGA---KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG----IKVGYLPQEPQLDPT 82 (552)
T ss_pred EEEecCCCCeeecCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----CEEEEEeccCCCCCC
Confidence 334444 4579999999999999 89999999999999999999998 89999998752 368999999999888
Q ss_pred hhHHHHHHHhhc----------------c---cc---------------------------------ccccccccccccc
Q 006782 121 DTLLENIRGLKE----------------G---KA---------------------------------VQVPIYDFKSSSR 148 (631)
Q Consensus 121 ~tl~e~L~~L~~----------------g---~~---------------------------------I~~Pvyd~~~~~r 148 (631)
.++.+++..... + .. ...+..+...+..
T Consensus 83 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~L 162 (552)
T TIGR03719 83 KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKL 162 (552)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhc
Confidence 899998864110 0 00 0011123445677
Q ss_pred cCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 149 IGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 149 s~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
++|+.+++..+++++.++.+++.|||++.+|..
T Consensus 163 SgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~ 195 (552)
T TIGR03719 163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAE 195 (552)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChH
Confidence 889999999999999999999999999999983
No 298
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.48 E-value=2.2e-14 Score=139.51 Aligned_cols=117 Identities=23% Similarity=0.253 Sum_probs=89.8
Q ss_pred EeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCC
Q 006782 44 SFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDP 115 (631)
Q Consensus 44 s~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p 115 (631)
++.++...++++++|.+.+|+ +++|+|+||||||||+++|++++ |+.|.|.++|..... ..++|+||
T Consensus 6 ~~~~~~~~~l~~~~~~i~~G~---~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q-- 80 (180)
T cd03214 6 SVGYGGRTVLDDLSLSIEAGE---IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ-- 80 (180)
T ss_pred EEEECCeeeEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH--
Confidence 344444679999999999999 89999999999999999999999 899999999875421 23556665
Q ss_pred CCCchhhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 116 RLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.+..+. +. +..+......++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 81 ----------~l~~~g----l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~ 130 (180)
T cd03214 81 ----------ALELLG----LA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI 130 (180)
T ss_pred ----------HHHHcC----CH-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 111110 00 111223356778889999999999999999999999999997
No 299
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=3.6e-14 Score=149.56 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=105.5
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC------CCceEEEECCcccc---------c
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---------S 105 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll------p~~G~I~lDg~~~~---------~ 105 (631)
+++++.++...+|++++|.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... .
T Consensus 49 ~nl~~~~~~~~iL~~is~~i~~Ge---~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~ 125 (305)
T PRK14264 49 EDLDVYYGDDHALKGVSMDIPEKS---VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELR 125 (305)
T ss_pred EEEEEEeCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 444455555779999999999999 99999999999999999999997 37999999986432 1
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhcc--------------c---c------------ccc-----cccccccccccCc
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKEG--------------K---A------------VQV-----PIYDFKSSSRIGY 151 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~g--------------~---~------------I~~-----Pvyd~~~~~rs~~ 151 (631)
+.++|++|++.+++ .++.+++...... . . +.. ...+......++|
T Consensus 126 ~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 204 (305)
T PRK14264 126 KRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGG 204 (305)
T ss_pred hceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHH
Confidence 35789999998887 4899988642110 0 0 000 1112334567788
Q ss_pred eeeeecCccEEEEeechhccccccCCCcE
Q 006782 152 RTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 152 ~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+.+++..+++++.++.+++.||++..+|.
T Consensus 205 q~qrv~LAraL~~~p~lLLLDEPtsgLD~ 233 (305)
T PRK14264 205 QQQRLCIARCLAVDPEVILMDEPASALDP 233 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 99999999999999999999999999997
No 300
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.48 E-value=5.5e-14 Score=142.77 Aligned_cols=136 Identities=12% Similarity=0.115 Sum_probs=98.3
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh--C-CCceEEEECCccccc--------ccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS--------RIIDG 110 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l--l-p~~G~I~lDg~~~~~--------~~i~~ 110 (631)
++++.++...+++++||.+.+|+ ++||+|+||||||||+++|+++ + |..|.|.++|..... ..+++
T Consensus 6 nl~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (248)
T PRK09580 6 DLHVSVEDKAILRGLNLEVRPGE---VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFM 82 (248)
T ss_pred EEEEEeCCeeeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEE
Confidence 33444455679999999999999 8999999999999999999999 3 789999999964321 24778
Q ss_pred ccCCCCCCchhhHHHHHHHhh----c--c-c----------------ccccc--cccccc-ccccCceeeeecCccEEEE
Q 006782 111 NFDDPRLTDYDTLLENIRGLK----E--G-K----------------AVQVP--IYDFKS-SSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~----~--g-~----------------~I~~P--vyd~~~-~~rs~~~~~~v~~a~VLIv 164 (631)
++|++.+++..+...++.... . . . .+..| ..+... ...++|+.+++..+++++.
T Consensus 83 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (248)
T PRK09580 83 AFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL 162 (248)
T ss_pred EecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHc
Confidence 899887766544333321110 0 0 0 00011 011111 2577889999999999999
Q ss_pred eechhccccccCCCcE
Q 006782 165 EGIYALSEKLRPLIDL 180 (631)
Q Consensus 165 EGi~lL~dEl~~~lDl 180 (631)
++.+++.|||+..+|.
T Consensus 163 ~p~illLDEPt~~LD~ 178 (248)
T PRK09580 163 EPELCILDESDSGLDI 178 (248)
T ss_pred CCCEEEEeCCCccCCH
Confidence 9999999999999998
No 301
>PLN02796 D-glycerate 3-kinase
Probab=99.48 E-value=2.3e-13 Score=145.16 Aligned_cols=176 Identities=18% Similarity=0.263 Sum_probs=123.0
Q ss_pred eEEeeceeEe---ccC--CccEEEEEECCCCCcHHHHHHHHHHhC-C---CceEEEECCccccccc-cccccCC------
Q 006782 51 IVIRACQLLA---QKN--HGIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDSSRI-IDGNFDD------ 114 (631)
Q Consensus 51 ~vL~~Isl~i---~~g--ekp~IIGI~GpsGSGKSTLlr~L~~ll-p---~~G~I~lDg~~~~~~~-i~~vfq~------ 114 (631)
.+++.+++.+ .+| .+|++|||+|++|||||||++.|.+.+ + ..|.|++|+++..... .....++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll 159 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALL 159 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhh
Confidence 4577787776 333 368999999999999999999999998 3 3789999999764311 1122233
Q ss_pred -----CCCCchhhHHHHHHHhh----ccccccccccccccccccCc-----e-eeeecCccEEEEeechhcc-c------
Q 006782 115 -----PRLTDYDTLLENIRGLK----EGKAVQVPIYDFKSSSRIGY-----R-TLEVPSSRIVIIEGIYALS-E------ 172 (631)
Q Consensus 115 -----p~l~d~~tl~e~L~~L~----~g~~I~~Pvyd~~~~~rs~~-----~-~~~v~~a~VLIvEGi~lL~-d------ 172 (631)
|..+|...+.+++..++ .+..+.+|.||++.+...+. . .....+.+|||+||+++.. +
T Consensus 160 ~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l 239 (347)
T PLN02796 160 ELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAV 239 (347)
T ss_pred hcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHh
Confidence 44567777888888887 57889999999999763332 1 2334788999999999865 2
Q ss_pred -------------------cccCCCcEEEEEEcC-hhhHHHHHHHHHHH-----HhCCCHHHHHHHHHhccccchhhccc
Q 006782 173 -------------------KLRPLIDLRVSVTGG-VHFDLVKRVFRDIQ-----RVGQEPEEIIHQISETVYPMYKAFIE 227 (631)
Q Consensus 173 -------------------El~~~lDlkIfVdad-~d~rLiRRI~RDv~-----erG~s~e~Vi~q~~~~v~P~~~~fIe 227 (631)
.+...+|..|.+.++ .+.-+.||+....+ ..|++.++|.+ |.++.+|+|+.|..
T Consensus 240 ~~~~~~l~~vN~~L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~-FV~~~mP~y~~y~~ 318 (347)
T PLN02796 240 KAVDPQLEVVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVAD-FVSRYMPAYKAYLP 318 (347)
T ss_pred hccChhHHHHHHHHHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 122357888888876 33444556554432 13678888655 44677899887743
No 302
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.48 E-value=3.9e-14 Score=154.60 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=125.9
Q ss_pred EeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccccCC
Q 006782 44 SFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDD 114 (631)
Q Consensus 44 s~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vfq~ 114 (631)
++.++.+.+.++|||.+.+|+ |-||.|.||||||||+++|.|.+ |+.|.|.+||.... ...|++++||
T Consensus 11 tK~f~~~~And~V~l~v~~Ge---IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQH 87 (501)
T COG3845 11 TKRFPGVVANDDVSLSVKKGE---IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQH 87 (501)
T ss_pred EEEcCCEEecCceeeeecCCc---EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeec
Confidence 344568899999999999999 99999999999999999999999 99999999998432 1468999999
Q ss_pred CCCCchhhHHHHHHHhhccc---ccc-----------cccc------ccccccccCceeeeecCccEEEEeechhccccc
Q 006782 115 PRLTDYDTLLENIRGLKEGK---AVQ-----------VPIY------DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~g~---~I~-----------~Pvy------d~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl 174 (631)
+.+++..|+.||+.--.... .+. ...| +...++.+-++.+++..-+++.-...++++|||
T Consensus 88 F~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEP 167 (501)
T COG3845 88 FMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEP 167 (501)
T ss_pred cccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999999996433210 000 0111 222344555678888888888888888889999
Q ss_pred cCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 006782 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISE 216 (631)
Q Consensus 175 ~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~ 216 (631)
+..+- |.+..-+-.+.|.+++.|.++--|.|.+.+
T Consensus 168 TaVLT-------P~E~~~lf~~l~~l~~~G~tIi~ITHKL~E 202 (501)
T COG3845 168 TAVLT-------PQEADELFEILRRLAAEGKTIIFITHKLKE 202 (501)
T ss_pred cccCC-------HHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence 87654 456666667777888889988777777644
No 303
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.47 E-value=2.7e-14 Score=159.70 Aligned_cols=130 Identities=12% Similarity=0.051 Sum_probs=101.7
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-CceEEEECCcccc--------ccccccccCCC---
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYNDS--------SRIIDGNFDDP--- 115 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-~~G~I~lDg~~~~--------~~~i~~vfq~p--- 115 (631)
...+++++||.+.+|+ ++||+|+||||||||+++|+|.+ | ..|.|.++|.... .+.+++++|++
T Consensus 272 ~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 348 (500)
T TIGR02633 272 HRKRVDDVSFSLRRGE---ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRH 348 (500)
T ss_pred cccccccceeEEeCCc---EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhC
Confidence 3468999999999999 99999999999999999999998 5 7999999986432 23579999996
Q ss_pred CCCchhhHHHHHHHh-----hc--c-c------c-------cccc--ccccccccccCceeeeecCccEEEEeechhccc
Q 006782 116 RLTDYDTLLENIRGL-----KE--G-K------A-------VQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L-----~~--g-~------~-------I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
.+++..++.+++... .. . . . +... ..+...+..++|+++++..+++++.++.+++.|
T Consensus 349 ~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD 428 (500)
T TIGR02633 349 GIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILD 428 (500)
T ss_pred CcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 477777888877531 00 0 0 0 1111 123334567889999999999999999999999
Q ss_pred cccCCCcEE
Q 006782 173 KLRPLIDLR 181 (631)
Q Consensus 173 El~~~lDlk 181 (631)
||+..+|..
T Consensus 429 EPt~~LD~~ 437 (500)
T TIGR02633 429 EPTRGVDVG 437 (500)
T ss_pred CCCCCcCHh
Confidence 999999984
No 304
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=3.5e-14 Score=160.07 Aligned_cols=134 Identities=11% Similarity=0.111 Sum_probs=105.5
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCC--C
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR--L 117 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~--l 117 (631)
+++++.++...++++++|.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+++. ..++|++|++. +
T Consensus 323 ~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~~~q~~~~~~ 395 (530)
T PRK15064 323 ENLTKGFDNGPLFKNLNLLLEAGE---RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN----ANIGYYAQDHAYDF 395 (530)
T ss_pred EeeEEeeCCceeecCcEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----eEEEEEcccccccC
Confidence 444455555679999999999999 89999999999999999999998 89999999874 36899999874 4
Q ss_pred CchhhHHHHHHHhhccc-----------cccc--cccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 118 TDYDTLLENIRGLKEGK-----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~g~-----------~I~~--Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
++..++.+++..+.... .+.. ...+......++|+.+++..+++++.++.+++.|||++.+|..
T Consensus 396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~ 472 (530)
T PRK15064 396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDME 472 (530)
T ss_pred CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 45578888875432110 0111 1234445678889999999999999999999999999999983
No 305
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.47 E-value=5.9e-14 Score=145.25 Aligned_cols=124 Identities=14% Similarity=0.103 Sum_probs=93.4
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHHHH
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~ 126 (631)
+.+.++++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|. +.+.++.+.+++..++.++
T Consensus 35 ~~~~il~~is~~i~~Ge---~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~------~~~~~~~~~~~~~~tv~en 105 (264)
T PRK13546 35 KTFFALDDISLKAYEGD---VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE------VSVIAISAGLSGQLTGIEN 105 (264)
T ss_pred CceEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE------EeEEecccCCCCCCcHHHH
Confidence 34578999999999999 89999999999999999999998 89999999884 2233444444555667777
Q ss_pred HHHhhc--cc---cc-----------c-ccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 127 IRGLKE--GK---AV-----------Q-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 127 L~~L~~--g~---~I-----------~-~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+..... +. .. . .+..+......++|+.+++..++.++.++.+++.|||+..+|.
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~ 176 (264)
T PRK13546 106 IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQ 176 (264)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCH
Confidence 643110 10 00 0 0112333456778889999999999999999999999999997
No 306
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.47 E-value=5.9e-14 Score=159.79 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=106.7
Q ss_pred ceeEeecC--ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------ccccc
Q 006782 41 DTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (631)
Q Consensus 41 ~~ls~~~g--~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~ 110 (631)
++++|.++ ...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.+||.+... +.+++
T Consensus 342 ~~v~f~y~~~~~~il~~i~~~i~~G~---~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 418 (574)
T PRK11160 342 NNVSFTYPDQPQPVLKGLSLQIKAGE---KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISV 418 (574)
T ss_pred EEEEEECCCCCCcceecceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeE
Confidence 34444442 3468999999999999 89999999999999999999999 899999999975432 46899
Q ss_pred ccCCCCCCchhhHHHHHHHhhcc----------------cccccc-cccccc----ccccCceeeeecCccEEEEeechh
Q 006782 111 NFDDPRLTDYDTLLENIRGLKEG----------------KAVQVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~g----------------~~I~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
++|++.+|+ .++.+|+...... +.+..| -||-.. ...++|+++++..++.++-++.++
T Consensus 419 v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~il 497 (574)
T PRK11160 419 VSQRVHLFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLL 497 (574)
T ss_pred Ecccchhhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999987 5999998653211 001111 122221 346788999999999999999999
Q ss_pred ccccccCCCcE
Q 006782 170 LSEKLRPLIDL 180 (631)
Q Consensus 170 L~dEl~~~lDl 180 (631)
+.||+++.+|.
T Consensus 498 ilDE~ts~lD~ 508 (574)
T PRK11160 498 LLDEPTEGLDA 508 (574)
T ss_pred EEeCCcccCCH
Confidence 99999999997
No 307
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.47 E-value=2.3e-14 Score=170.04 Aligned_cols=197 Identities=19% Similarity=0.262 Sum_probs=143.7
Q ss_pred eeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------
Q 006782 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------- 105 (631)
Q Consensus 34 ~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~------- 105 (631)
+++.++.-+|. .+....|++|+||.+++|+ .+||+|||||||||+..+|.... |+.|.|.+||++...
T Consensus 988 I~~~~V~F~YP-sRP~~~Il~~l~l~i~~Gq---TvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 988 IEFRNVSFAYP-TRPDVPVLNNLSLSIRAGQ---TVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred EEEeeeEeeCC-CCCCchhhcCCcEEecCCC---EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 34444444442 3345679999999999999 89999999999999999999999 999999999986543
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhcccc-----------------cccc-ccccccc----cccCceeeeecCccEEE
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKA-----------------VQVP-IYDFKSS----SRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~-----------------I~~P-vyd~~~~----~rs~~~~~~v~~a~VLI 163 (631)
+.++.|-|+|.+|+ .|++||+..-...-+ ...| -||-..+ +.+||+++|++.+|+++
T Consensus 1064 ~~i~lVsQEP~LF~-~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil 1142 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL 1142 (1228)
T ss_pred HhcceeccCchhhc-ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH
Confidence 56899999999998 599999976521100 1123 3665554 56889999999999999
Q ss_pred EeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
=+|.++|+||.++.||.. ..+.+....... ..|+|.--|.|+. -+.+.||.|
T Consensus 1143 RnPkILLLDEATSALDse-------SErvVQeALd~a-~~gRT~IvIAHRL-------------STIqnaD~I------- 1194 (1228)
T KOG0055|consen 1143 RNPKILLLDEATSALDSE-------SERVVQEALDRA-MEGRTTIVIAHRL-------------STIQNADVI------- 1194 (1228)
T ss_pred cCCCeeeeeccchhhhhh-------hHHHHHHHHHHh-hcCCcEEEEecch-------------hhhhcCCEE-------
Confidence 999999999999999972 333332222222 2366655555554 233555555
Q ss_pred CCCCCCceeeeccCCcccHHHHHHHhcc
Q 006782 244 FTGFQNPTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 244 ~~~~~n~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
+|+|.|+.++.|...+++..
T Consensus 1195 --------~Vi~~G~VvE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1195 --------AVLKNGKVVEQGTHDELLAK 1214 (1228)
T ss_pred --------EEEECCEEEecccHHHHHhC
Confidence 67888988887777777763
No 308
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.47 E-value=6e-14 Score=162.89 Aligned_cols=129 Identities=22% Similarity=0.230 Sum_probs=104.4
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCch
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDY 120 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~ 120 (631)
...+|++++|.+++|+ .|||+|+||||||||++.|++++ |..|.|.+||.+.. ++.+++++|++.+|+
T Consensus 477 ~~~vL~~i~l~i~~G~---~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~- 552 (694)
T TIGR03375 477 ETPALDNVSLTIRPGE---KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY- 552 (694)
T ss_pred CccceeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhh-
Confidence 4568999999999999 79999999999999999999999 89999999997543 256899999999987
Q ss_pred hhHHHHHHHhhcc---cc-------------c-ccc-cccccc----ccccCceeeeecCccEEEEeechhccccccCCC
Q 006782 121 DTLLENIRGLKEG---KA-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 121 ~tl~e~L~~L~~g---~~-------------I-~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
.|+.+||...... +. + ..| -|+-.. ...++|+++++..+++++-++.+++.||+++.+
T Consensus 553 ~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~L 632 (694)
T TIGR03375 553 GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAM 632 (694)
T ss_pred hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 5999999753221 00 0 112 122222 246788999999999999999999999999999
Q ss_pred cEE
Q 006782 179 DLR 181 (631)
Q Consensus 179 Dlk 181 (631)
|..
T Consensus 633 D~~ 635 (694)
T TIGR03375 633 DNR 635 (694)
T ss_pred CHH
Confidence 973
No 309
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.47 E-value=4.1e-14 Score=142.52 Aligned_cols=132 Identities=16% Similarity=0.097 Sum_probs=98.0
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d 119 (631)
..++..++...++++++|.+.+|+ ++||+|+||||||||+++|++.+ |+.|.|.++|....... ....+++
T Consensus 26 ~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-----~~~~~~~ 97 (224)
T cd03220 26 LGRKGEVGEFWALKDVSFEVPRGE---RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG-----LGGGFNP 97 (224)
T ss_pred hhhhhhcCCeEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhc-----ccccCCC
Confidence 444567777889999999999999 89999999999999999999998 89999999986532111 1122334
Q ss_pred hhhHHHHHHHhhc--cc---c-----------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 120 YDTLLENIRGLKE--GK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 120 ~~tl~e~L~~L~~--g~---~-----------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
..++.+++..... +. . +.. +..+......++|+.+++..++.++.++.+++.|||+..+|.
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~ 175 (224)
T cd03220 98 ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 4567777653211 00 0 001 122333456788899999999999999999999999999997
No 310
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.47 E-value=5.1e-14 Score=163.79 Aligned_cols=135 Identities=18% Similarity=0.268 Sum_probs=107.0
Q ss_pred eeEeecC-ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------cccccccc
Q 006782 42 TLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNF 112 (631)
Q Consensus 42 ~ls~~~g-~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vf 112 (631)
+++|.++ ...+|+++||.+++|+ .|||+|+||||||||++.|++++ |+.|.|.+||.+.. ++.+++++
T Consensus 478 ~vsf~y~~~~~iL~~isl~i~~G~---~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 554 (708)
T TIGR01193 478 DVSYSYGYGSNILSDISLTIKMNS---KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLP 554 (708)
T ss_pred EEEEEcCCCCcceeceeEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEe
Confidence 3344443 3578999999999999 79999999999999999999999 99999999997543 24689999
Q ss_pred CCCCCCchhhHHHHHHHhh-cc---cc-------------c-ccc-cccccc----ccccCceeeeecCccEEEEeechh
Q 006782 113 DDPRLTDYDTLLENIRGLK-EG---KA-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~-~g---~~-------------I-~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
|+|.+|+. |+++||.... .. +. + ..| -|+... ...++|+++++..+|+++-++.++
T Consensus 555 Q~~~lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~il 633 (708)
T TIGR01193 555 QEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVL 633 (708)
T ss_pred cCceehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999874 9999997541 11 00 0 112 133322 246789999999999999999999
Q ss_pred ccccccCCCcE
Q 006782 170 LSEKLRPLIDL 180 (631)
Q Consensus 170 L~dEl~~~lDl 180 (631)
+.||+++.+|.
T Consensus 634 iLDE~Ts~LD~ 644 (708)
T TIGR01193 634 ILDESTSNLDT 644 (708)
T ss_pred EEeCccccCCH
Confidence 99999999997
No 311
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.47 E-value=5.7e-14 Score=144.19 Aligned_cols=128 Identities=14% Similarity=0.159 Sum_probs=98.6
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (631)
..++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++.+++ .
T Consensus 34 ~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~ 109 (257)
T cd03288 34 KPVLKHVKAYIKPGQ---KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-G 109 (257)
T ss_pred CcceeEEEEEEcCCC---EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-c
Confidence 468999999999999 89999999999999999999998 89999999986432 245789999998876 4
Q ss_pred hHHHHHHHhhccc-----------ccc-----cc-----ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 122 TLLENIRGLKEGK-----------AVQ-----VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 122 tl~e~L~~L~~g~-----------~I~-----~P-----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++.+++....... .+. .| ..+......++++.+++..+++++-++.+++.|||+..+|.
T Consensus 110 tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~ 189 (257)
T cd03288 110 SIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDM 189 (257)
T ss_pred HHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 7777764211000 000 01 01112245677888999999999999999999999999997
Q ss_pred E
Q 006782 181 R 181 (631)
Q Consensus 181 k 181 (631)
.
T Consensus 190 ~ 190 (257)
T cd03288 190 A 190 (257)
T ss_pred H
Confidence 3
No 312
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.46 E-value=5.6e-14 Score=157.33 Aligned_cols=146 Identities=15% Similarity=0.149 Sum_probs=109.6
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccccCCC---CCC
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDP---RLT 118 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vfq~p---~l~ 118 (631)
.+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|++|++ .++
T Consensus 266 ~~l~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGE---ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCc---EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 36999999999999 89999999999999999999999 89999999986432 13589999997 467
Q ss_pred chhhHHHHHHHhh-----c--c-----c----------cccc--cccccccccccCceeeeecCccEEEEeechhccccc
Q 006782 119 DYDTLLENIRGLK-----E--G-----K----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (631)
Q Consensus 119 d~~tl~e~L~~L~-----~--g-----~----------~I~~--Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl 174 (631)
+..++.+++.... . + . .+.. ...+...+..++|+.+++..+++++.++.+++.|||
T Consensus 343 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEP 422 (501)
T PRK10762 343 LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEP 422 (501)
T ss_pred CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCC
Confidence 7788888875310 0 0 0 0111 123344457788999999999999999999999999
Q ss_pred cCCCcEEEEEEcChhhHHHHHHHHHHHHhCCC
Q 006782 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (631)
Q Consensus 175 ~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s 206 (631)
+..+|.. ....+..+.+++...|.+
T Consensus 423 t~~LD~~-------~~~~l~~~l~~~~~~g~t 447 (501)
T PRK10762 423 TRGVDVG-------AKKEIYQLINQFKAEGLS 447 (501)
T ss_pred CCCCCHh-------HHHHHHHHHHHHHHCCCE
Confidence 9999984 333444444444433443
No 313
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.46 E-value=3.7e-14 Score=159.40 Aligned_cols=136 Identities=22% Similarity=0.238 Sum_probs=107.1
Q ss_pred ceeEeecCc-eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------cccccccc
Q 006782 41 DTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (631)
Q Consensus 41 ~~ls~~~g~-~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vf 112 (631)
++++|.++. ..+|+++||.+++|+ .++|+||||||||||++.|.+++ |+.|.|.+||.+.. .+.+++++
T Consensus 338 ~~vsf~Y~~~~~vL~~isl~i~~G~---~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~ 414 (529)
T TIGR02868 338 RDLSFGYPGSPPVLDGVSLDLPPGE---RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFA 414 (529)
T ss_pred EEEEEecCCCCceeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEc
Confidence 344444432 358999999999999 79999999999999999999999 89999999996533 24689999
Q ss_pred CCCCCCchhhHHHHHHHhhcc---c-------------ccc-cc-cccccc----ccccCceeeeecCccEEEEeechhc
Q 006782 113 DDPRLTDYDTLLENIRGLKEG---K-------------AVQ-VP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYAL 170 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~g---~-------------~I~-~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL 170 (631)
|+|.+|+ .|+++|+...... + .+. .| -||-.. ...++|+++++..+|+++-++.+++
T Consensus 415 Q~~~lF~-~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ili 493 (529)
T TIGR02868 415 QDAHLFD-TTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILL 493 (529)
T ss_pred cCccccc-ccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999997 4999998753211 0 011 12 133322 2367899999999999999999999
Q ss_pred cccccCCCcE
Q 006782 171 SEKLRPLIDL 180 (631)
Q Consensus 171 ~dEl~~~lDl 180 (631)
.||+++.+|.
T Consensus 494 LDE~TSaLD~ 503 (529)
T TIGR02868 494 LDEPTEHLDA 503 (529)
T ss_pred EeCCcccCCH
Confidence 9999999997
No 314
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.46 E-value=1.8e-14 Score=167.79 Aligned_cols=127 Identities=19% Similarity=0.262 Sum_probs=103.7
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (631)
..+|+++||.+++|+ .++|+||||||||||++.|.+++ |..|.|.+||.+.. .+.+++++|+|.+|+ .
T Consensus 494 ~~vL~~isl~i~~Ge---~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGE---VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-G 569 (711)
T ss_pred CccccCceEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccc-c
Confidence 569999999999999 89999999999999999999999 89999999997543 246899999999987 6
Q ss_pred hHHHHHHHhhccc---c-------------c-ccc-cccccc----ccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 122 TLLENIRGLKEGK---A-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 122 tl~e~L~~L~~g~---~-------------I-~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
|+++||....... . + ..| -+|-.. ...++|+++++..+|+++-++.+++.||+++.+|
T Consensus 570 TIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD 649 (711)
T TIGR00958 570 SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD 649 (711)
T ss_pred CHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccC
Confidence 9999997432210 0 1 012 133322 2467899999999999999999999999999999
Q ss_pred E
Q 006782 180 L 180 (631)
Q Consensus 180 l 180 (631)
.
T Consensus 650 ~ 650 (711)
T TIGR00958 650 A 650 (711)
T ss_pred H
Confidence 7
No 315
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.46 E-value=2.6e-14 Score=139.83 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=84.4
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCch
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDY 120 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~ 120 (631)
++++.++...+++++ |.+++|+ +++|+||||||||||+++|++++ |+.|.|.+++.. +++++|++.
T Consensus 5 ~l~~~~~~~~~l~~~-~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~q~~~---- 71 (177)
T cd03222 5 DCVKRYGVFFLLVEL-GVVKEGE---VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----PVYKPQYID---- 71 (177)
T ss_pred CeEEEECCEEEEccC-cEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----EEEEcccCC----
Confidence 344556667888885 8999999 99999999999999999999999 899999998753 566666432
Q ss_pred hhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 121 DTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 121 ~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.++++.+++..++.++.++.+++.||++..+|.
T Consensus 72 ---------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~ 104 (177)
T cd03222 72 ---------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI 104 (177)
T ss_pred ---------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 566788889999999999999999999999997
No 316
>PLN03211 ABC transporter G-25; Provisional
Probab=99.46 E-value=9.1e-14 Score=160.68 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=116.8
Q ss_pred ecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CC--ceEEEECCcccc---ccccccccCCCCCCc
Q 006782 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS--IAVITMDNYNDS---SRIIDGNFDDPRLTD 119 (631)
Q Consensus 46 ~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~--~G~I~lDg~~~~---~~~i~~vfq~p~l~d 119 (631)
.++.+.+|+++|+.+++|+ ++||+||||||||||+++|+|.+ |+ .|.|.++|.... .+.++|++|++.+++
T Consensus 77 ~~~~~~iL~~vs~~i~~Ge---~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~ 153 (659)
T PLN03211 77 QIQERTILNGVTGMASPGE---ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYP 153 (659)
T ss_pred cCCCCeeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCC
Confidence 3455679999999999999 89999999999999999999998 54 899999997542 245899999999999
Q ss_pred hhhHHHHHHHhhc---ccc---------c-------cccc-c-----ccccccccCceeeeecCccEEEEeechhccccc
Q 006782 120 YDTLLENIRGLKE---GKA---------V-------QVPI-Y-----DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (631)
Q Consensus 120 ~~tl~e~L~~L~~---g~~---------I-------~~Pv-y-----d~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl 174 (631)
..|+.|++..... ... + .... . +......++|+++++..++.++.++.+++.|||
T Consensus 154 ~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred cCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 8999999965321 000 0 0110 0 112245788999999999999999999999999
Q ss_pred cCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHH
Q 006782 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (631)
Q Consensus 175 ~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~ 212 (631)
+..+|.. ....+.++.+++.+.|+++--++|
T Consensus 234 tsgLD~~-------~~~~l~~~L~~l~~~g~TvI~~sH 264 (659)
T PLN03211 234 TSGLDAT-------AAYRLVLTLGSLAQKGKTIVTSMH 264 (659)
T ss_pred CCCcCHH-------HHHHHHHHHHHHHhCCCEEEEEec
Confidence 9999973 333444555555545655433333
No 317
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.46 E-value=5.6e-14 Score=157.33 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=110.3
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccccCCCC---CC
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDPR---LT 118 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vfq~p~---l~ 118 (631)
.+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... ...++|++|++. ++
T Consensus 267 ~~l~~isl~i~~Ge---~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGE---IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCc---EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 47999999999999 89999999999999999999999 89999999986432 135789999874 77
Q ss_pred chhhHHHHHHHhhc------c---------cc-------ccc--cccccccccccCceeeeecCccEEEEeechhccccc
Q 006782 119 DYDTLLENIRGLKE------G---------KA-------VQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (631)
Q Consensus 119 d~~tl~e~L~~L~~------g---------~~-------I~~--Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl 174 (631)
+..++.+++..... + .. ... ...+...+..++|+++++..+++++.++.+++.|||
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEP 423 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEP 423 (501)
T ss_pred CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 77888888753110 0 00 111 122334467788999999999999999999999999
Q ss_pred cCCCcEEEEEEcChhhHHHHHHHHHHHHhCCC
Q 006782 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (631)
Q Consensus 175 ~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s 206 (631)
+..+|+. ..+.+..+.+++.+.|.+
T Consensus 424 t~~LD~~-------~~~~l~~~l~~l~~~g~t 448 (501)
T PRK11288 424 TRGIDVG-------AKHEIYNVIYELAAQGVA 448 (501)
T ss_pred CCCCCHh-------HHHHHHHHHHHHHhCCCE
Confidence 9999984 334444555555444544
No 318
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.45 E-value=1e-14 Score=141.93 Aligned_cols=205 Identities=12% Similarity=0.172 Sum_probs=137.1
Q ss_pred eecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCC
Q 006782 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPR 116 (631)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~ 116 (631)
|.+..+.+++.|||.+++|. .+||+|.||||||||+++|+|.+ |++|.|.++|.... .+.+.++||+|+
T Consensus 21 f~r~~~~AV~~vSFtL~~~Q---TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpn 97 (267)
T COG4167 21 FRRQTVEAVKPVSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPN 97 (267)
T ss_pred hhhhhhhcccceEEEecCCc---EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCc
Confidence 45566789999999999999 89999999999999999999999 89999999996432 256889999986
Q ss_pred C--CchhhHHHHHHHhhccc----------cc--------cccc-cccccccccCceeeeecCccEEEEeechhcccccc
Q 006782 117 L--TDYDTLLENIRGLKEGK----------AV--------QVPI-YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (631)
Q Consensus 117 l--~d~~tl~e~L~~L~~g~----------~I--------~~Pv-yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~ 175 (631)
. .+...+...|....... .+ ..|. -++..+..+.++++++..++++|+++.+++.|+..
T Consensus 98 ts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl 177 (267)
T COG4167 98 TSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEAL 177 (267)
T ss_pred cccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhh
Confidence 4 33444444443322110 00 1232 23344566677899999999999999999999988
Q ss_pred CCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeec
Q 006782 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILK 255 (631)
Q Consensus 176 ~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLK 255 (631)
..+|.. ....++.-+..-..+.|.+..-|.+. +--- .-+.+.|.||.
T Consensus 178 ~~LD~s------mrsQl~NL~LeLQek~GiSyiYV~Qh------------lG~i---------------KHi~D~viVM~ 224 (267)
T COG4167 178 ASLDMS------MRSQLINLMLELQEKQGISYIYVTQH------------IGMI---------------KHISDQVLVMH 224 (267)
T ss_pred hhccHH------HHHHHHHHHHHHHHHhCceEEEEech------------hhHh---------------hhhcccEEEEe
Confidence 888863 11112211111111224331111110 1111 22234455677
Q ss_pred cCCcccHHHHHHHhcccccccccceeeeec
Q 006782 256 STRPVTVDEIKAVMSKEHTETTEETYDIYL 285 (631)
Q Consensus 256 s~~~v~~~~Ik~vL~~~~~~~~~~f~DIYl 285 (631)
.+..++.+..+++|..+..+.++..++-||
T Consensus 225 EG~vvE~G~t~~v~a~P~~~~TkRlieShF 254 (267)
T COG4167 225 EGEVVERGSTADVLASPLHELTKRLIESHF 254 (267)
T ss_pred cCceeecCChhhhhcCCccHHHHHHHHHHh
Confidence 788888899999999999888888775454
No 319
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.45 E-value=9.8e-14 Score=158.18 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=103.5
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (631)
..+|++++|.+++|+ .|||+|+||||||||+++|++++ |..|.|.+||.+.. .+.+++++|+|.+|+.
T Consensus 354 ~~il~~i~l~i~~Ge---~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~- 429 (592)
T PRK10790 354 NLVLQNINLSVPSRG---FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD- 429 (592)
T ss_pred CceeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-
Confidence 468999999999999 79999999999999999999999 89999999997543 2568999999999985
Q ss_pred hHHHHHHHhhccc---------------cc-ccc-cccccc----ccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 122 TLLENIRGLKEGK---------------AV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 122 tl~e~L~~L~~g~---------------~I-~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
|+++|+.....-. .+ ..| -+|-.. ...++|+++++..+|+++-++.+++.||+++.+|.
T Consensus 430 Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~ 509 (592)
T PRK10790 430 TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDS 509 (592)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 9999997532100 01 012 122222 24678899999999999999999999999999997
No 320
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.3e-14 Score=157.19 Aligned_cols=134 Identities=20% Similarity=0.274 Sum_probs=107.5
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFD 113 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq 113 (631)
++.++.|. .++++++|++++|+ .++|+|+||||||||++.|+|++ |+.|.|.++|..... +.+.++.|
T Consensus 327 ~~~y~~g~-~~l~~l~~t~~~g~---~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q 402 (559)
T COG4988 327 SFRYPDGK-PALSDLNLTIKAGQ---LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402 (559)
T ss_pred EEecCCCC-cccCCceeEecCCc---EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCC
Confidence 34444454 78999999999999 79999999999999999999999 799999999985443 56899999
Q ss_pred CCCCCchhhHHHHHHHhhcc----------------cccccc-cccccccc----ccCceeeeecCccEEEEeechhccc
Q 006782 114 DPRLTDYDTLLENIRGLKEG----------------KAVQVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~g----------------~~I~~P-vyd~~~~~----rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
+|.+|+ .|+++|+...... +.+..| -.|...++ .++|+.+++..+|.++-.+.+++.|
T Consensus 403 ~p~lf~-gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD 481 (559)
T COG4988 403 NPYLFA-GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD 481 (559)
T ss_pred CCcccc-ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 999887 5899998543321 111222 23444433 6788999999999999999999999
Q ss_pred cccCCCcE
Q 006782 173 KLRPLIDL 180 (631)
Q Consensus 173 El~~~lDl 180 (631)
|++..+|.
T Consensus 482 EpTA~LD~ 489 (559)
T COG4988 482 EPTAHLDA 489 (559)
T ss_pred CCccCCCH
Confidence 99999998
No 321
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.45 E-value=1.1e-13 Score=156.28 Aligned_cols=128 Identities=19% Similarity=0.257 Sum_probs=102.7
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCch
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDY 120 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~ 120 (631)
...++++++|.+++|+ .+||+|+||||||||+++|+|.+ |..|.|.+||.+.. .+.+++++|+|.+|+.
T Consensus 330 ~~~~l~~~~~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ 406 (544)
T TIGR01842 330 KKPTLRGISFRLQAGE---ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG 406 (544)
T ss_pred CccccccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccc
Confidence 3578999999999999 89999999999999999999999 89999999997532 2468999999999874
Q ss_pred hhHHHHHHHhhcc---ccc--------------ccc-ccccc----cccccCceeeeecCccEEEEeechhccccccCCC
Q 006782 121 DTLLENIRGLKEG---KAV--------------QVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 121 ~tl~e~L~~L~~g---~~I--------------~~P-vyd~~----~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
++++|+...... +.+ ..| .++.. ....++|+++++..++.++-++.+++.||+++.+
T Consensus 407 -ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~L 485 (544)
T TIGR01842 407 -TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNL 485 (544)
T ss_pred -cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccc
Confidence 899999732210 000 011 12221 2346788999999999999999999999999999
Q ss_pred cE
Q 006782 179 DL 180 (631)
Q Consensus 179 Dl 180 (631)
|.
T Consensus 486 D~ 487 (544)
T TIGR01842 486 DE 487 (544)
T ss_pred CH
Confidence 97
No 322
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.45 E-value=1.2e-13 Score=132.17 Aligned_cols=156 Identities=18% Similarity=0.187 Sum_probs=120.3
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcc--cc-----------cc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN--DS-----------SR 106 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~--~~-----------~~ 106 (631)
+.+.+-||...+|-+|+|..+.|+ .+.+.||||+|||||+|.|.-+. |.+|.+.+.+.. .. ++
T Consensus 6 ~~in~~yg~~q~lfdi~l~~~~ge---tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~ 82 (242)
T COG4161 6 NGINCFYGAHQALFDITLDCPEGE---TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRR 82 (242)
T ss_pred cccccccccchheeeeeecCCCCC---EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHH
Confidence 344566788889999999999999 89999999999999999998877 999999987742 11 14
Q ss_pred ccccccCCCCCCchhhHHHHHHHhh-c--c--------------cccc-ccccccccccccCceeeeecCccEEEEeech
Q 006782 107 IIDGNFDDPRLTDYDTLLENIRGLK-E--G--------------KAVQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (631)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~-~--g--------------~~I~-~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~ 168 (631)
.+|++||...+|+++++.+||-..- + | +... .+.-|.-.-..++|+.++++.++.++.++..
T Consensus 83 ~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqv 162 (242)
T COG4161 83 NVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred hhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcE
Confidence 6899999999999999999985321 0 0 0010 1122333334678899999999999999999
Q ss_pred hccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCC
Q 006782 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (631)
Q Consensus 169 lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s 206 (631)
++.||++..+|+ +.+..+-.|.+.+...|.+
T Consensus 163 llfdeptaaldp-------eitaqvv~iikel~~tgit 193 (242)
T COG4161 163 LLFDEPTAALDP-------EITAQIVSIIKELAETGIT 193 (242)
T ss_pred EeecCcccccCH-------HHHHHHHHHHHHHHhcCce
Confidence 999999999997 3445566677777766765
No 323
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.44 E-value=1.2e-13 Score=157.06 Aligned_cols=135 Identities=15% Similarity=0.243 Sum_probs=105.3
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFD 113 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq 113 (631)
++++..+...+|++++|.+++|+ .++|+||||||||||+++|+|++ |+.|.|.+||.+.. .+.+++++|
T Consensus 320 ~~~y~~~~~~~l~~i~~~i~~G~---~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 396 (569)
T PRK10789 320 QFTYPQTDHPALENVNFTLKPGQ---MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQ 396 (569)
T ss_pred EEECCCCCCccccCeeEEECCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEcc
Confidence 33333333568999999999999 89999999999999999999999 89999999997532 245899999
Q ss_pred CCCCCchhhHHHHHHHhhccc---c-------------c-ccc-ccccc----cccccCceeeeecCccEEEEeechhcc
Q 006782 114 DPRLTDYDTLLENIRGLKEGK---A-------------V-QVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGIYALS 171 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~g~---~-------------I-~~P-vyd~~----~~~rs~~~~~~v~~a~VLIvEGi~lL~ 171 (631)
+|.+|+ .|+++|+....... . + ..| -++.. ....++|+++++..++.++-++.+++.
T Consensus 397 ~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illl 475 (569)
T PRK10789 397 TPFLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILIL 475 (569)
T ss_pred CCeecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999987 49999996432110 0 0 011 12211 134678899999999999999999999
Q ss_pred ccccCCCcE
Q 006782 172 EKLRPLIDL 180 (631)
Q Consensus 172 dEl~~~lDl 180 (631)
||+++.+|.
T Consensus 476 DEpts~LD~ 484 (569)
T PRK10789 476 DDALSAVDG 484 (569)
T ss_pred ECccccCCH
Confidence 999999997
No 324
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.44 E-value=1e-13 Score=157.53 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=106.9
Q ss_pred eeEeecC--ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccc
Q 006782 42 TLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (631)
Q Consensus 42 ~ls~~~g--~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~v 111 (631)
+++|.+. ...+|++++|.+++|+ .+||+|+||||||||+++|+|++ |..|.|.+||.+.. .+.++|+
T Consensus 346 ~vsf~y~~~~~~il~~i~l~i~~G~---~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v 422 (582)
T PRK11176 346 NVTFTYPGKEVPALRNINFKIPAGK---TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALV 422 (582)
T ss_pred EEEEecCCCCCccccCceEEeCCCC---EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEE
Confidence 3444443 3579999999999999 79999999999999999999999 89999999997543 2568999
Q ss_pred cCCCCCCchhhHHHHHHHhhcc----cc-------------c-ccc-cccccc----ccccCceeeeecCccEEEEeech
Q 006782 112 FDDPRLTDYDTLLENIRGLKEG----KA-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIY 168 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g----~~-------------I-~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~ 168 (631)
+|++.+|+ .|+++|+...... +. + ..| -+|-.. ...++|+++++..+|.++-++.+
T Consensus 423 ~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~i 501 (582)
T PRK11176 423 SQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI 501 (582)
T ss_pred ccCceeec-chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCE
Confidence 99999997 6999999753211 00 0 011 122222 24678999999999999999999
Q ss_pred hccccccCCCcEE
Q 006782 169 ALSEKLRPLIDLR 181 (631)
Q Consensus 169 lL~dEl~~~lDlk 181 (631)
++.||+++.+|..
T Consensus 502 lilDEptsaLD~~ 514 (582)
T PRK11176 502 LILDEATSALDTE 514 (582)
T ss_pred EEEECccccCCHH
Confidence 9999999999973
No 325
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.43 E-value=1.1e-13 Score=155.50 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=99.7
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccccCCC---CCCc
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDP---RLTD 119 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vfq~p---~l~d 119 (631)
++++++|.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+++.... ...++|++|++ .+++
T Consensus 278 ~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGE---ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 5999999999999 89999999999999999999998 89999999986432 13578999975 4677
Q ss_pred hhhHHHHHHHh-----h---ccc-----------ccccc--ccccccccccCceeeeecCccEEEEeechhccccccCCC
Q 006782 120 YDTLLENIRGL-----K---EGK-----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 120 ~~tl~e~L~~L-----~---~g~-----------~I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
..++.+++... . ... ....+ ..+...+..++|+++++..+++++.++.+++.|||+..+
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gL 434 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGV 434 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCc
Confidence 67787776421 0 000 01111 234444678889999999999999999999999999999
Q ss_pred cEE
Q 006782 179 DLR 181 (631)
Q Consensus 179 Dlk 181 (631)
|..
T Consensus 435 D~~ 437 (510)
T PRK15439 435 DVS 437 (510)
T ss_pred Chh
Confidence 984
No 326
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.43 E-value=4.7e-14 Score=152.96 Aligned_cols=128 Identities=25% Similarity=0.296 Sum_probs=102.5
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCch
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDY 120 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~ 120 (631)
.+++|++|||.+++|+ +|+++||||+||||++|.|-..+ ..+|.|.+||.+... ..+|.++|+..+|+
T Consensus 550 ~k~vl~disF~v~pGk---tvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN- 625 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPGK---TVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN- 625 (790)
T ss_pred CCceeecceEEecCCc---EEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeec-
Confidence 4678999999999999 99999999999999999999998 789999999987543 46899999998886
Q ss_pred hhHHHHHHHhhccc------------cc-----ccc-cccccccc----ccCceeeeecCccEEEEeechhccccccCCC
Q 006782 121 DTLLENIRGLKEGK------------AV-----QVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 121 ~tl~e~L~~L~~g~------------~I-----~~P-vyd~~~~~----rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
+|+..|++..+.+. .| ..| -|.-..++ .+||++++++.++.++-.+.++++||.++.+
T Consensus 626 dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSAL 705 (790)
T KOG0056|consen 626 DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSAL 705 (790)
T ss_pred ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhc
Confidence 46666665433210 11 122 23333333 4788999999999999999999999999999
Q ss_pred cE
Q 006782 179 DL 180 (631)
Q Consensus 179 Dl 180 (631)
|.
T Consensus 706 DT 707 (790)
T KOG0056|consen 706 DT 707 (790)
T ss_pred CC
Confidence 86
No 327
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.43 E-value=1.2e-13 Score=173.46 Aligned_cols=129 Identities=12% Similarity=0.079 Sum_probs=107.5
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccCCCCCCchh
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLTDYD 121 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq~p~l~d~~ 121 (631)
.+.++++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.+++++|++.+++..
T Consensus 942 ~k~aL~~lsl~I~~Ge---i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~L 1018 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQ---ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHL 1018 (2272)
T ss_pred CceEEEeeEEEEcCCc---EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCC
Confidence 4679999999999999 99999999999999999999999 99999999997542 24589999999999999
Q ss_pred hHHHHHHHhhc--ccc--------------cccc-ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 122 TLLENIRGLKE--GKA--------------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 122 tl~e~L~~L~~--g~~--------------I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++.+++..... +.. +... ..+...+..++|+++++..+++++.++.+++.|||+..+|.
T Consensus 1019 TV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp 1094 (2272)
T TIGR01257 1019 TVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDP 1094 (2272)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCH
Confidence 99999975422 110 0111 12334467888999999999999999999999999999997
No 328
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.42 E-value=3.1e-13 Score=132.84 Aligned_cols=203 Identities=13% Similarity=0.142 Sum_probs=142.9
Q ss_pred cceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCc-ccc--------ccccc
Q 006782 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY-NDS--------SRIID 109 (631)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~-~~~--------~~~i~ 109 (631)
.+.++..++.|.+++++||.+.+|+ +=.|+|||||||||++..|.|.. |..|.+.++|. +.. ...++
T Consensus 8 ~~~vsVsF~GF~Aln~ls~~v~~Ge---lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIG 84 (249)
T COG4674 8 LDGVSVSFGGFKALNDLSFSVDPGE---LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIG 84 (249)
T ss_pred EeceEEEEcceeeeeeeEEEecCCe---EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccC
Confidence 3556667789999999999999999 89999999999999999999999 89999999993 322 24577
Q ss_pred cccCCCCCCchhhHHHHHHHhhccc-cccc------------------------cccccccccccCceeeeecCccEEEE
Q 006782 110 GNFDDPRLTDYDTLLENIRGLKEGK-AVQV------------------------PIYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~g~-~I~~------------------------Pvyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
--||.|..|...++++||.-..+.+ .+.. +..+......+.++++.+....+++-
T Consensus 85 RKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q 164 (249)
T COG4674 85 RKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQ 164 (249)
T ss_pred ccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeecc
Confidence 7899999999999999997544322 1110 11122223455678888899999999
Q ss_pred eechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCC
Q 006782 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (631)
Q Consensus 165 EGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (631)
++.+++.|||...+- +.++...-.+.+.++ .+++=+||-+++.-.
T Consensus 165 ~P~lLLlDEPvAGMT-------d~Et~~taeLl~~la----------------------------~~hsilVVEHDM~Fv 209 (249)
T COG4674 165 DPKLLLLDEPVAGMT-------DAETEKTAELLKSLA----------------------------GKHSILVVEHDMGFV 209 (249)
T ss_pred CCcEEEecCccCCCc-------HHHHHHHHHHHHHHh----------------------------cCceEEEEeccHHHH
Confidence 999999999887653 233333333333322 234466677777766
Q ss_pred CCCCCceeeeccCCcccHHHHHHHhcccccccccceeeeecC
Q 006782 245 TGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLL 286 (631)
Q Consensus 245 ~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~~~f~DIYl~ 286 (631)
+.+..+|-||-.+..+-.+.+.++-..+ +..++|+-
T Consensus 210 r~~A~~VTVlh~G~VL~EGsld~v~~dp------~ViEvYLG 245 (249)
T COG4674 210 REIADKVTVLHEGSVLAEGSLDEVQNDP------KVIEVYLG 245 (249)
T ss_pred HHhhheeEEEeccceeecccHHHhhcCc------ceEeeecc
Confidence 7777777777777655555555444332 34467763
No 329
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.42 E-value=2.2e-13 Score=158.35 Aligned_cols=135 Identities=17% Similarity=0.286 Sum_probs=106.1
Q ss_pred eeEeec--CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccc
Q 006782 42 TLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (631)
Q Consensus 42 ~ls~~~--g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~v 111 (631)
+++|.+ +...+++++||.+++|+ .++|+|+||||||||+++|++++ |+.|.|.+||.+... +.++++
T Consensus 460 ~vsf~y~~~~~~il~~i~l~i~~G~---~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v 536 (694)
T TIGR01846 460 NIRFRYAPDSPEVLSNLNLDIKPGE---FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVV 536 (694)
T ss_pred EEEEEcCCCCccccccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEE
Confidence 334444 34568999999999999 79999999999999999999999 899999999985432 468999
Q ss_pred cCCCCCCchhhHHHHHHHhhccc----------------cc-ccc-cccccc----ccccCceeeeecCccEEEEeechh
Q 006782 112 FDDPRLTDYDTLLENIRGLKEGK----------------AV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g~----------------~I-~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
+|++.+|+ .|+.+|+....... .+ ..| -++... ...++|+++++..++.++-++.++
T Consensus 537 ~q~~~lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~il 615 (694)
T TIGR01846 537 LQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRIL 615 (694)
T ss_pred ccCCeehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999887 58999996422110 00 112 122222 346788999999999999999999
Q ss_pred ccccccCCCcE
Q 006782 170 LSEKLRPLIDL 180 (631)
Q Consensus 170 L~dEl~~~lDl 180 (631)
+.||+++.+|.
T Consensus 616 ilDEpts~LD~ 626 (694)
T TIGR01846 616 IFDEATSALDY 626 (694)
T ss_pred EEECCCcCCCH
Confidence 99999999997
No 330
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.42 E-value=1.4e-13 Score=137.41 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=100.0
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (631)
..++++++|.+++|+ ++||+|+||||||||+++|+|.. |..|.|.++|.... .+.++|++|++.+++ .
T Consensus 17 ~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 92 (221)
T cd03244 17 PPVLKNISFSIKPGE---KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-G 92 (221)
T ss_pred cccccceEEEECCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-c
Confidence 468999999999999 99999999999999999999998 89999999997432 245889999998776 4
Q ss_pred hHHHHHHHhhccc--c-------cccc-c-----------cccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 122 TLLENIRGLKEGK--A-------VQVP-I-----------YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 122 tl~e~L~~L~~g~--~-------I~~P-v-----------yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++.+++....... . .... . .+......++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 93 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~ 172 (221)
T cd03244 93 TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDP 172 (221)
T ss_pred hHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 8888875321100 0 0000 0 0123345677888999999999999999999999999997
No 331
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.42 E-value=2e-13 Score=155.62 Aligned_cols=134 Identities=20% Similarity=0.295 Sum_probs=105.9
Q ss_pred eEeecC-ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccC
Q 006782 43 LSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFD 113 (631)
Q Consensus 43 ls~~~g-~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq 113 (631)
++|.++ ...+|++++|.+++|+ .|+|+|+||||||||++.|+|++ |..|.|.+||.+... +.++|++|
T Consensus 340 vsf~y~~~~~iL~~inl~i~~G~---~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 416 (588)
T PRK13657 340 VSFSYDNSRQGVEDVSFEAKPGQ---TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQ 416 (588)
T ss_pred EEEEeCCCCceecceeEEECCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEec
Confidence 344443 2468999999999999 89999999999999999999999 899999999975332 56899999
Q ss_pred CCCCCchhhHHHHHHHhhcc---cc-------------cc-cc-cccccc----ccccCceeeeecCccEEEEeechhcc
Q 006782 114 DPRLTDYDTLLENIRGLKEG---KA-------------VQ-VP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALS 171 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~g---~~-------------I~-~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL~ 171 (631)
+|.+|+ .|+++|+...... .. +. .| .+|... ...++|+++++..+|.++-++.+++.
T Consensus 417 ~~~lf~-~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliL 495 (588)
T PRK13657 417 DAGLFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILIL 495 (588)
T ss_pred Cccccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999997 5999999754221 00 00 12 122222 24678999999999999999999999
Q ss_pred ccccCCCcE
Q 006782 172 EKLRPLIDL 180 (631)
Q Consensus 172 dEl~~~lDl 180 (631)
||+++.+|.
T Consensus 496 DEpts~LD~ 504 (588)
T PRK13657 496 DEATSALDV 504 (588)
T ss_pred eCCccCCCH
Confidence 999999997
No 332
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.42 E-value=1.9e-13 Score=128.87 Aligned_cols=97 Identities=18% Similarity=0.237 Sum_probs=83.1
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchh
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYD 121 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~ 121 (631)
+++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++. ..++|++|
T Consensus 6 l~~~~~~~~~l~~~~~~~~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~-------- 70 (144)
T cd03221 6 LSKTYGGKLLLKDISLTINPGD---RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ-------- 70 (144)
T ss_pred EEEEECCceEEEeeEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc--------
Confidence 3344444568999999999999 99999999999999999999999 89999999984 25666666
Q ss_pred hHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 122 TLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 122 tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.++++.+++..++.++-++.+++.|||+..+|.
T Consensus 71 --------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 --------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred --------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 456677888899999999999999999999997
No 333
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.42 E-value=2.1e-13 Score=155.59 Aligned_cols=136 Identities=21% Similarity=0.321 Sum_probs=106.0
Q ss_pred ceeEeecCc-eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccc
Q 006782 41 DTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (631)
Q Consensus 41 ~~ls~~~g~-~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~v 111 (631)
+++++.++. ..++++++|.+++|+ .+||+|+||||||||+++|++.+ |+.|.|.+||.+.. .+.++++
T Consensus 338 ~~v~~~y~~~~~~l~~i~~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 414 (585)
T TIGR01192 338 RHITFEFANSSQGVFDVSFEAKAGQ---TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATV 414 (585)
T ss_pred EEEEEECCCCCccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 344444432 468999999999999 89999999999999999999999 89999999997532 2468899
Q ss_pred cCCCCCCchhhHHHHHHHhhcc---cc-------------c-ccc-ccccc----cccccCceeeeecCccEEEEeechh
Q 006782 112 FDDPRLTDYDTLLENIRGLKEG---KA-------------V-QVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g---~~-------------I-~~P-vyd~~----~~~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
+|++.+|+ .++.+|+...... +. + ..| .++.. ....++|+++++..+++++-++.++
T Consensus 415 ~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~il 493 (585)
T TIGR01192 415 FQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPIL 493 (585)
T ss_pred ccCCccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999887 6899999653211 00 0 112 12211 2346788999999999999999999
Q ss_pred ccccccCCCcE
Q 006782 170 LSEKLRPLIDL 180 (631)
Q Consensus 170 L~dEl~~~lDl 180 (631)
+.||+++.+|.
T Consensus 494 ilDEpts~LD~ 504 (585)
T TIGR01192 494 VLDEATSALDV 504 (585)
T ss_pred EEECCccCCCH
Confidence 99999999997
No 334
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.41 E-value=9.8e-14 Score=138.92 Aligned_cols=120 Identities=14% Similarity=0.065 Sum_probs=91.6
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEE-ECCccccccccccccCCCCCCchhhHHHHHHH
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-MDNYNDSSRIIDGNFDDPRLTDYDTLLENIRG 129 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~-lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~ 129 (631)
+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|. +++.... +.+.+.+++..++.+++..
T Consensus 2 vl~~vs~~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~------~~~~~~l~~~ltv~enl~~ 72 (213)
T PRK15177 2 VLDKTDFVMGYHE---HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP------LGANSFILPGLTGEENARM 72 (213)
T ss_pred eeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec------cccccccCCcCcHHHHHHH
Confidence 7999999999999 99999999999999999999998 8999986 6664321 2234567777888898865
Q ss_pred hhc--ccc---c--------ccc-ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 130 LKE--GKA---V--------QVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 130 L~~--g~~---I--------~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
... +.. . ..+ .++...+..++++.+++..+++++.++.+++.|||...+|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 73 MASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 432 100 0 011 12333456677888999999999999999999999888886
No 335
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.41 E-value=2.7e-13 Score=151.49 Aligned_cols=128 Identities=21% Similarity=0.217 Sum_probs=97.8
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccccCCC---CCC
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDP---RLT 118 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~vfq~p---~l~ 118 (631)
.+++++||.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++|++|++ .+|
T Consensus 262 ~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~ 338 (491)
T PRK10982 262 PSIRDVSFDLHKGE---ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIY 338 (491)
T ss_pred cccceeeEEEeCCc---EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcc
Confidence 58999999999999 89999999999999999999999 89999999986432 12378888875 345
Q ss_pred chhhHHHH-----HHHhhc--c----c-----------cccc--cccccccccccCceeeeecCccEEEEeechhccccc
Q 006782 119 DYDTLLEN-----IRGLKE--G----K-----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (631)
Q Consensus 119 d~~tl~e~-----L~~L~~--g----~-----------~I~~--Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl 174 (631)
+..++.++ +..... + . .+.. ...+...++.++|+.+++..+++++.++.+++.|||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEP 418 (491)
T PRK10982 339 AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEP 418 (491)
T ss_pred cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 55554433 321110 0 0 0011 123445567889999999999999999999999999
Q ss_pred cCCCcEE
Q 006782 175 RPLIDLR 181 (631)
Q Consensus 175 ~~~lDlk 181 (631)
+..+|..
T Consensus 419 t~gLD~~ 425 (491)
T PRK10982 419 TRGIDVG 425 (491)
T ss_pred CcccChh
Confidence 9999984
No 336
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.40 E-value=1.8e-13 Score=140.21 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=95.3
Q ss_pred EEeeceeEec-----cCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHHH
Q 006782 52 VIRACQLLAQ-----KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 125 (631)
Q Consensus 52 vL~~Isl~i~-----~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e 125 (631)
.+.+++|.+. +|+ ++||+|+||||||||+++|++++ |+.|.|.+++. .+++++|++..+...++.+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge---~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----~i~~~~q~~~~~~~~tv~e 80 (246)
T cd03237 9 TLGEFTLEVEGGSISESE---VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----TVSYKPQYIKADYEGTVRD 80 (246)
T ss_pred ccCcEEEEEecCCcCCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----eEEEecccccCCCCCCHHH
Confidence 4566666665 677 99999999999999999999998 89999999874 5788899887766678888
Q ss_pred HHHHhhcc--c----------ccccc-ccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 126 NIRGLKEG--K----------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 126 ~L~~L~~g--~----------~I~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
++...... . ...++ ..+...+..++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 81 ~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~ 149 (246)
T cd03237 81 LLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVE 149 (246)
T ss_pred HHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 87542211 0 01111 233444667889999999999999999999999999999983
No 337
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.40 E-value=1.3e-13 Score=155.04 Aligned_cols=128 Identities=21% Similarity=0.275 Sum_probs=103.4
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~~ 121 (631)
.++++++||.+++|+ .++|+|+||||||||++.|+++. |..|.|.+||.+... +.+++++|+|.+|+ .
T Consensus 335 ~~il~~i~l~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ 410 (529)
T TIGR02857 335 APALRPVSFTVPPGE---RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA-G 410 (529)
T ss_pred cccccceeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccC-c
Confidence 468999999999999 79999999999999999999999 899999999975432 46899999999997 5
Q ss_pred hHHHHHHHhhcc---ccc--------------ccc-cccccc----ccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 122 TLLENIRGLKEG---KAV--------------QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 122 tl~e~L~~L~~g---~~I--------------~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
|+++|+...... +.+ ..| -+|-.. ...++|+++++..++.++-++.+++.||+++.+|
T Consensus 411 ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD 490 (529)
T TIGR02857 411 TIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLD 490 (529)
T ss_pred CHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 999999753211 000 011 122221 3467899999999999999999999999999999
Q ss_pred EE
Q 006782 180 LR 181 (631)
Q Consensus 180 lk 181 (631)
..
T Consensus 491 ~~ 492 (529)
T TIGR02857 491 AE 492 (529)
T ss_pred HH
Confidence 73
No 338
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.40 E-value=2.3e-13 Score=153.91 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=97.1
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~~ 121 (631)
..+|+++||.+++|+ .++|+|+||||||||+++|+|.+ |+.|.|.+||.+... +.+++++|++.+|+.
T Consensus 336 ~~~l~~i~~~i~~G~---~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~- 411 (547)
T PRK10522 336 GFSVGPINLTIKRGE---LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ- 411 (547)
T ss_pred CeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-
Confidence 468999999999999 89999999999999999999999 899999999985432 468899999987753
Q ss_pred hHHHH--------H----HHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 122 TLLEN--------I----RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 122 tl~e~--------L----~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
++.+| + ..+.-+..+..+.-...-...++|+++++..++.++-++.+++.||+++.+|..
T Consensus 412 ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~ 483 (547)
T PRK10522 412 LLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPH 483 (547)
T ss_pred hhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 33332 1 111111111111000011357789999999999999999999999999999973
No 339
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.40 E-value=2.8e-13 Score=156.50 Aligned_cols=166 Identities=15% Similarity=0.167 Sum_probs=120.2
Q ss_pred ceeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------
Q 006782 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (631)
Q Consensus 33 ~~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------- 104 (631)
++++..+...|....+...++++++|.+.+|+ +++|+|+||||||||+++|++++ |+.|.|.+||....
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGE---MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHH
Confidence 34444444443211123579999999999999 89999999999999999999999 89999999997532
Q ss_pred ----ccccccccCCCCCCchhhHHHHHHHhhc--ccc--------------ccc-cccccccccccCceeeeecCccEEE
Q 006782 105 ----SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVI 163 (631)
Q Consensus 105 ----~~~i~~vfq~p~l~d~~tl~e~L~~L~~--g~~--------------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLI 163 (631)
.+.++++||++.+|+..++.+++..... +.. ..+ ...+...+..++++.+++..++.++
T Consensus 81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~ 160 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALM 160 (648)
T ss_pred HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 2357899999999988888888864211 100 001 1223344567788999999999999
Q ss_pred EeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHH
Q 006782 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (631)
Q Consensus 164 vEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e 208 (631)
.++.+++.|||+..+|.. ..+.+..+.+++.+.|.+.-
T Consensus 161 ~~P~lLllDEP~~gLD~~-------s~~~l~~ll~~l~~~g~til 198 (648)
T PRK10535 161 NGGQVILADEPTGALDSH-------SGEEVMAILHQLRDRGHTVI 198 (648)
T ss_pred cCCCEEEEECCCCCCCHH-------HHHHHHHHHHHHHhcCCEEE
Confidence 999999999999999983 33344444555544465543
No 340
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.40 E-value=2.7e-13 Score=151.65 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=92.1
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHHHHHH
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~ 128 (631)
..+|++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... ++ ..+.+++..++.+++.
T Consensus 37 ~~IL~nVSfsI~~GE---ivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~---i~---~~~~l~~~lTV~EnL~ 107 (549)
T PRK13545 37 HYALNNISFEVPEGE---IVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL---IA---ISSGLNGQLTGIENIE 107 (549)
T ss_pred ceEEeeeEEEEeCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee---EE---eccccCCCCcHHHHHH
Confidence 469999999999999 99999999999999999999999 89999999985411 11 1223344457777764
Q ss_pred Hhh--ccc---c-----------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 129 GLK--EGK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 129 ~L~--~g~---~-----------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
... .+. . ... +..+......++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 108 l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 108 LKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred hhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 311 110 0 011 122334456788899999999999999999999999999997
No 341
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.39 E-value=3.4e-13 Score=152.73 Aligned_cols=128 Identities=19% Similarity=0.212 Sum_probs=103.1
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCch
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDY 120 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~ 120 (631)
...++++++|.+++|+ .|+|+|+||||||||+++|+|++ |..|.|.+||.+.. ...++|++|+|.+|+
T Consensus 344 ~~~il~~inl~i~~G~---~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~- 419 (571)
T TIGR02203 344 DRPALDSISLVIEPGE---TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFN- 419 (571)
T ss_pred CCccccCeeEEecCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccccc-
Confidence 3568999999999999 79999999999999999999999 89999999996432 246899999999887
Q ss_pred hhHHHHHHHhhc-c---c-------------cc-ccc-cccccc----ccccCceeeeecCccEEEEeechhccccccCC
Q 006782 121 DTLLENIRGLKE-G---K-------------AV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 121 ~tl~e~L~~L~~-g---~-------------~I-~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
.|+++||..... . + .+ ..| -+|... ...++|+++++..+|.++-++.+++.||+++.
T Consensus 420 ~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~ 499 (571)
T TIGR02203 420 DTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSA 499 (571)
T ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 489999874321 0 0 00 112 122222 24678999999999999999999999999999
Q ss_pred CcE
Q 006782 178 IDL 180 (631)
Q Consensus 178 lDl 180 (631)
+|.
T Consensus 500 LD~ 502 (571)
T TIGR02203 500 LDN 502 (571)
T ss_pred CCH
Confidence 997
No 342
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.39 E-value=3.1e-13 Score=150.87 Aligned_cols=137 Identities=11% Similarity=-0.006 Sum_probs=99.8
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC--CceEEEECCcccc--------cccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDS--------SRIIDG 110 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp--~~G~I~lDg~~~~--------~~~i~~ 110 (631)
+++++.++...+++++||.+.+|+ ++||+||||||||||+++|+|..| +.|.|.++|.... .+.+++
T Consensus 264 ~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 340 (490)
T PRK10938 264 NNGVVSYNDRPILHNLSWQVNPGE---HWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGY 340 (490)
T ss_pred eceEEEECCeeEEeeceEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceE
Confidence 334444555679999999999999 999999999999999999999874 5899999985321 135789
Q ss_pred ccCCCCCCch--hhHHHHHHHh-h------cc--c-----------ccccc--ccccccccccCceeeeecCccEEEEee
Q 006782 111 NFDDPRLTDY--DTLLENIRGL-K------EG--K-----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (631)
Q Consensus 111 vfq~p~l~d~--~tl~e~L~~L-~------~g--~-----------~I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEG 166 (631)
++|++.++.. .++.+++... . .. . .+... ..+......++|+++++..+++++.++
T Consensus 341 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p 420 (490)
T PRK10938 341 VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHP 420 (490)
T ss_pred ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 9988755332 2444443211 0 00 0 01111 223334567889999999999999999
Q ss_pred chhccccccCCCcE
Q 006782 167 IYALSEKLRPLIDL 180 (631)
Q Consensus 167 i~lL~dEl~~~lDl 180 (631)
.+++.|||+..+|.
T Consensus 421 ~lllLDEPt~gLD~ 434 (490)
T PRK10938 421 TLLILDEPLQGLDP 434 (490)
T ss_pred CEEEEcCccccCCH
Confidence 99999999999998
No 343
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.1e-13 Score=150.22 Aligned_cols=174 Identities=17% Similarity=0.157 Sum_probs=124.1
Q ss_pred ccCCCCCCCccccCcccchhhhhhhccC---C-CceeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCc
Q 006782 3 QDTSSGADSPRRRPGLLRDQVQLVKKKD---S-DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAG 78 (631)
Q Consensus 3 ~~~~~~~~s~~r~~~l~~~~~~~v~~~~---~-~~~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSG 78 (631)
++.+-+.+|.+|++.+..... .+...+ . ....+.....+|+++....++|+++||.+.+|+ -|+|+|+||||
T Consensus 301 ~~lgq~~~Sa~Rl~~i~~q~~-e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GE---kvAIlG~SGsG 376 (573)
T COG4987 301 QHLGQVIASARRLNDILDQKP-EVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGE---KVAILGRSGSG 376 (573)
T ss_pred HHhhHHHHHHHHHhhhccCCc-ccCCCccccCCccceeeeccceeecCCCccchhhccceeecCCC---eEEEECCCCCC
Confidence 344556778888888875322 221111 1 111222333345555556679999999999999 59999999999
Q ss_pred HHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCchhhHHHHHHHhhcc----------cccc---
Q 006782 79 KTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDTLLENIRGLKEG----------KAVQ--- 137 (631)
Q Consensus 79 KSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~~tl~e~L~~L~~g----------~~I~--- 137 (631)
|||+++.|.+.+ |+.|.|.+.|..... ..+.++.|.+.+|+ .|+++||..-+.. +.+.
T Consensus 377 KSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~ 455 (573)
T COG4987 377 KSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFS-GTLRDNLRLANPDASDEELWAALQQVGLEK 455 (573)
T ss_pred HHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcCCCCCHHHHHHHHHHcCHHH
Confidence 999999999999 999999999964322 35788999998886 5899998643322 0011
Q ss_pred ----cc-----ccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 138 ----VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 138 ----~P-----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
.| ..+..-...+||+.++++.+++++-+..+.+.|||+..+|..
T Consensus 456 l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~ 508 (573)
T COG4987 456 LLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPI 508 (573)
T ss_pred HHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChh
Confidence 12 122222456889999999999999999999999999999973
No 344
>PLN03130 ABC transporter C family member; Provisional
Probab=99.39 E-value=3.8e-13 Score=168.44 Aligned_cols=183 Identities=16% Similarity=0.195 Sum_probs=131.7
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCch
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDY 120 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~ 120 (631)
..+||+++||.+++|+ .|||+|+||||||||+++|.+++ |..|.|.+||.+... +.+++++|+|.+|+.
T Consensus 1251 ~~~VL~~is~~I~~Ge---kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G 1327 (1622)
T PLN03130 1251 LPPVLHGLSFEISPSE---KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG 1327 (1622)
T ss_pred CCceecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccc
Confidence 3479999999999999 79999999999999999999999 899999999986432 568999999999975
Q ss_pred hhHHHHHHHhhccc---------------cc-ccc-ccccccc----cccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 121 DTLLENIRGLKEGK---------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 121 ~tl~e~L~~L~~g~---------------~I-~~P-vyd~~~~----~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
|+++||.....-. .+ ..| -+|...+ ..++|+++++..+|+++-++.+++.||+++.+|
T Consensus 1328 -TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD 1406 (1622)
T PLN03130 1328 -TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406 (1622)
T ss_pred -cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence 9999986432110 01 112 2333322 467789999999999999999999999999999
Q ss_pred EEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCc
Q 006782 180 LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRP 259 (631)
Q Consensus 180 lkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~ 259 (631)
.. ..+.+.+..|... .++| =++|-+..+... .++++++|+.|+.
T Consensus 1407 ~~-------Te~~Iq~~I~~~~-~~~T---------------------------vI~IAHRL~tI~-~~DrIlVLd~G~I 1450 (1622)
T PLN03130 1407 VR-------TDALIQKTIREEF-KSCT---------------------------MLIIAHRLNTII-DCDRILVLDAGRV 1450 (1622)
T ss_pred HH-------HHHHHHHHHHHHC-CCCE---------------------------EEEEeCChHHHH-hCCEEEEEECCEE
Confidence 72 1223333333221 2333 334433333322 2577788888888
Q ss_pred ccHHHHHHHhcc
Q 006782 260 VTVDEIKAVMSK 271 (631)
Q Consensus 260 v~~~~Ik~vL~~ 271 (631)
++.|.-.+.+..
T Consensus 1451 vE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1451 VEFDTPENLLSN 1462 (1622)
T ss_pred EEeCCHHHHHhC
Confidence 877777776654
No 345
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.39 E-value=2.5e-13 Score=142.07 Aligned_cols=121 Identities=19% Similarity=0.175 Sum_probs=95.8
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHHHHHH
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~ 128 (631)
..+|+++||.+.+|+ ++||+|+||||||||+++|+|++ |..|.|.++| .++|++|++.+++. ++.+++.
T Consensus 50 ~~vL~~vs~~i~~Ge---~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------~i~yv~q~~~l~~~-tv~enl~ 119 (282)
T cd03291 50 APVLKNINLKIEKGE---MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------RISFSSQFSWIMPG-TIKENII 119 (282)
T ss_pred ccceeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------EEEEEeCccccccc-CHHHHhh
Confidence 468999999999999 89999999999999999999998 8999999987 37889999887764 8888875
Q ss_pred Hhhc-cc----------ccc-----ccc-----cccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 129 GLKE-GK----------AVQ-----VPI-----YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 129 ~L~~-g~----------~I~-----~Pv-----yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.... .. .+. .|. .+......++|+.+++..++.++.++.+++.|||+..+|.
T Consensus 120 ~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~ 192 (282)
T cd03291 120 FGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192 (282)
T ss_pred cccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 4211 00 000 010 0111235677889999999999999999999999999997
No 346
>PLN03232 ABC transporter C family member; Provisional
Probab=99.39 E-value=2.7e-13 Score=169.18 Aligned_cols=190 Identities=18% Similarity=0.223 Sum_probs=133.2
Q ss_pred eeEeec--CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccc
Q 006782 42 TLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (631)
Q Consensus 42 ~ls~~~--g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~v 111 (631)
++++.| +..+||+++||.+++|+ .|||+|+||||||||+++|.+++ |..|.|.+||.+... +.++++
T Consensus 1239 nVsf~Y~~~~~~vL~~isl~I~~Ge---kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iV 1315 (1495)
T PLN03232 1239 DVHLRYRPGLPPVLHGLSFFVSPSE---KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSII 1315 (1495)
T ss_pred EEEEEECCCCCcccccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEE
Confidence 334444 33579999999999999 79999999999999999999999 999999999986432 568999
Q ss_pred cCCCCCCchhhHHHHHHHhhccc---------------cc-ccc-cccccc----ccccCceeeeecCccEEEEeechhc
Q 006782 112 FDDPRLTDYDTLLENIRGLKEGK---------------AV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYAL 170 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g~---------------~I-~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL 170 (631)
+|+|.+|+. |+++||.....-. .+ ..| -+|... ...++|+++++..+|+++-++.+++
T Consensus 1316 pQdp~LF~g-TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILI 1394 (1495)
T PLN03232 1316 PQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILV 1394 (1495)
T ss_pred CCCCeeeCc-cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999999974 9999986422100 01 112 233222 2467789999999999999999999
Q ss_pred cccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCc
Q 006782 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNP 250 (631)
Q Consensus 171 ~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~ 250 (631)
.||+++.+|.. ..+.+.+..|... .++|.--|.|+. +.. ..+|.
T Consensus 1395 LDEATSaLD~~-------Te~~Iq~~L~~~~-~~~TvI~IAHRl---------------------------~ti-~~~Dr 1438 (1495)
T PLN03232 1395 LDEATASVDVR-------TDSLIQRTIREEF-KSCTMLVIAHRL---------------------------NTI-IDCDK 1438 (1495)
T ss_pred EECCcccCCHH-------HHHHHHHHHHHHc-CCCEEEEEeCCH---------------------------HHH-HhCCE
Confidence 99999999972 1223333333221 234433333333 221 12566
Q ss_pred eeeeccCCcccHHHHHHHhcc
Q 006782 251 TYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 251 v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
+++|+.|+.++.|.-.+.+.+
T Consensus 1439 IlVL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232 1439 ILVLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred EEEEECCEEEEECCHHHHHhC
Confidence 677888887777777777754
No 347
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.38 E-value=1.8e-13 Score=169.85 Aligned_cols=163 Identities=18% Similarity=0.273 Sum_probs=121.3
Q ss_pred ceeEeecC---ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-------------------------
Q 006782 41 DTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P------------------------- 91 (631)
Q Consensus 41 ~~ls~~~g---~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p------------------------- 91 (631)
++++|.|. ...||+++||.+++|+ .+||+|+|||||||++++|.+++ |
T Consensus 1169 ~nVsF~Y~~~~~~~vL~~lsl~i~~G~---~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1466)
T PTZ00265 1169 MDVNFRYISRPNVPIYKDLTFSCDSKK---TTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245 (1466)
T ss_pred EEEEEECCCCCCCccccCeeEEEcCCC---EEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccc
Confidence 34445543 3469999999999999 89999999999999999999998 7
Q ss_pred -----------------------------CceEEEECCcccc-------ccccccccCCCCCCchhhHHHHHHHhhcc--
Q 006782 92 -----------------------------SIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEG-- 133 (631)
Q Consensus 92 -----------------------------~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~tl~e~L~~L~~g-- 133 (631)
..|.|.+||.+.. ++.+++++|+|.+|+ .|++|||......
T Consensus 1246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~~at 1324 (1466)
T PTZ00265 1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDAT 1324 (1466)
T ss_pred cccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCCCCC
Confidence 5899999998543 256899999999996 6999999764321
Q ss_pred -cc-------------c-ccc-ccccccc----cccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHH
Q 006782 134 -KA-------------V-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLV 193 (631)
Q Consensus 134 -~~-------------I-~~P-vyd~~~~----~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLi 193 (631)
+. | ..| -||-..+ ..++|+++++..+|+++-++.++++||+++.+|.. ..+.+
T Consensus 1325 ~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~-------sE~~I 1397 (1466)
T PTZ00265 1325 REDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSN-------SEKLI 1397 (1466)
T ss_pred HHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH-------HHHHH
Confidence 00 1 122 2443333 46789999999999999999999999999999972 23334
Q ss_pred HHHHHHHH-HhCCCHHHHHHHH
Q 006782 194 KRVFRDIQ-RVGQEPEEIIHQI 214 (631)
Q Consensus 194 RRI~RDv~-erG~s~e~Vi~q~ 214 (631)
....++.. .+|+|.--|.|+.
T Consensus 1398 ~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1398 EKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred HHHHHHHhccCCCEEEEEechH
Confidence 44344433 2466666666665
No 348
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.38 E-value=5.2e-13 Score=151.47 Aligned_cols=128 Identities=22% Similarity=0.317 Sum_probs=101.8
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~~ 121 (631)
..+|++++|.+++|+ .++|+|+||||||||++.|+|++ |..|.|.+||.+... +.+++++|+|.+|+ .
T Consensus 353 ~~iL~~inl~i~~Ge---~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~-~ 428 (576)
T TIGR02204 353 QPALDGLNLTVRPGE---TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFA-A 428 (576)
T ss_pred CccccceeEEecCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcccc-c
Confidence 468999999999999 79999999999999999999999 899999999975332 46899999999886 5
Q ss_pred hHHHHHHHhhcc---cc-------------cc-cc-ccccc----cccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 122 TLLENIRGLKEG---KA-------------VQ-VP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 122 tl~e~L~~L~~g---~~-------------I~-~P-vyd~~----~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
|+++|+...... +. +. .| .++.. ....++|+++++..++.++-++.+++.||+++.+|
T Consensus 429 Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD 508 (576)
T TIGR02204 429 SVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALD 508 (576)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccC
Confidence 889998643211 00 00 11 11211 23467889999999999999999999999999999
Q ss_pred EE
Q 006782 180 LR 181 (631)
Q Consensus 180 lk 181 (631)
..
T Consensus 509 ~~ 510 (576)
T TIGR02204 509 AE 510 (576)
T ss_pred HH
Confidence 73
No 349
>PRK13409 putative ATPase RIL; Provisional
Probab=99.38 E-value=5.1e-13 Score=152.72 Aligned_cols=149 Identities=16% Similarity=0.189 Sum_probs=112.7
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCch
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDY 120 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~ 120 (631)
++++.++.+ .|++++|.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++ ..++|++|++..+..
T Consensus 345 ~ls~~~~~~-~l~~~s~~i~~Ge---iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------~~i~y~~Q~~~~~~~ 414 (590)
T PRK13409 345 DLTKKLGDF-SLEVEGGEIYEGE---VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------LKISYKPQYIKPDYD 414 (590)
T ss_pred ceEEEECCE-EEEecceEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------eeEEEecccccCCCC
Confidence 344444444 4899999999999 99999999999999999999999 899999886 258899999887777
Q ss_pred hhHHHHHHHhhccc--c---------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcCh
Q 006782 121 DTLLENIRGLKEGK--A---------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGV 188 (631)
Q Consensus 121 ~tl~e~L~~L~~g~--~---------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~ 188 (631)
.++.+++....... . ..+ ...+...+..++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~------- 487 (590)
T PRK13409 415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE------- 487 (590)
T ss_pred CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH-------
Confidence 89999886532110 0 001 1234455678899999999999999999999999999999983
Q ss_pred hhHHHHHHHHHHHH-hCCCH
Q 006782 189 HFDLVKRVFRDIQR-VGQEP 207 (631)
Q Consensus 189 d~rLiRRI~RDv~e-rG~s~ 207 (631)
....+.++.+++.. .|.++
T Consensus 488 ~~~~l~~~l~~l~~~~g~tv 507 (590)
T PRK13409 488 QRLAVAKAIRRIAEEREATA 507 (590)
T ss_pred HHHHHHHHHHHHHHhCCCEE
Confidence 33444555555533 35544
No 350
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.38 E-value=1.8e-13 Score=155.25 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=97.1
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCchhh
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDT 122 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~~t 122 (631)
.+|+++||.+++|+ +++|+||||||||||++.|++.+ |+.|.|.+||.+... ..+++++|++.+|+. +
T Consensus 356 ~~l~~vs~~i~~G~---~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-t 431 (555)
T TIGR01194 356 FALGPIDLRIAQGD---IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-L 431 (555)
T ss_pred ceeccceEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-h
Confidence 58999999999999 89999999999999999999999 999999999975432 457899999888753 4
Q ss_pred HHHHHH---------Hhhcc----ccc-ccc-ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 123 LLENIR---------GLKEG----KAV-QVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 123 l~e~L~---------~L~~g----~~I-~~P-vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+.+|.. ...+. ..+ ..| -|+. ....++|+++++..+++++-++.+++.||+++.+|.
T Consensus 432 i~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~ 503 (555)
T TIGR01194 432 IGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPILLFDEWAADQDP 503 (555)
T ss_pred hhcccccchhHHHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 544431 11100 111 012 1222 145778999999999999999999999999999997
No 351
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.37 E-value=1.8e-13 Score=145.62 Aligned_cols=170 Identities=19% Similarity=0.217 Sum_probs=118.1
Q ss_pred EECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCCCCCCchhhHHHHHHHhhc--cc-------c
Q 006782 71 VAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------A 135 (631)
Q Consensus 71 I~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~p~l~d~~tl~e~L~~L~~--g~-------~ 135 (631)
|+||||||||||+++|+|++ |+.|.|.++|.... .+.++++||++.+|+..++.+|+..... +. .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 58999999999999999999 89999999997542 2468999999999999999999975321 10 0
Q ss_pred -------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCC
Q 006782 136 -------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (631)
Q Consensus 136 -------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s 206 (631)
... +..+...++.++|+++++..++.++.++.+++.|||+..+|.. ....++.+.+++.+ .|.+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~-------~~~~l~~~l~~l~~~~g~t 153 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKK-------LRDQMQLELKTIQEQLGIT 153 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHHHhcCCE
Confidence 001 1123444667889999999999999999999999999999973 22223333333322 2333
Q ss_pred HHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCcccHHHHHHHhccccc
Q 006782 207 PEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHT 274 (631)
Q Consensus 207 ~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~ 274 (631)
=+++.++.+.....++.+++|+.++.+..+...+++..+..
T Consensus 154 ---------------------------iiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~ 194 (325)
T TIGR01187 154 ---------------------------FVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPAN 194 (325)
T ss_pred ---------------------------EEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 23333443333456677788887776655666666665433
No 352
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=6.1e-13 Score=153.42 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=92.4
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCC----
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP---- 115 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p---- 115 (631)
+++++.+|...+|++|||.+.+|+ ++||+||||||||||+++|+|.+ |+.|.|.+++.. .++++.|++
T Consensus 5 ~nls~~~g~~~~l~~vs~~i~~Ge---~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~----~i~~~~q~~~~~~ 77 (638)
T PRK10636 5 SSLQIRRGVRVLLDNATATINPGQ---KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW----QLAWVNQETPALP 77 (638)
T ss_pred EEEEEEeCCceeecCcEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC----EEEEEecCCCCCC
Confidence 445566677889999999999999 89999999999999999999998 899999988742 123333321
Q ss_pred -----------CCCchhhHHH----------H-------------------HHHhhccccccccccccccccccCceeee
Q 006782 116 -----------RLTDYDTLLE----------N-------------------IRGLKEGKAVQVPIYDFKSSSRIGYRTLE 155 (631)
Q Consensus 116 -----------~l~d~~tl~e----------~-------------------L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~ 155 (631)
..+...+... . +..+..+-.+.....+......++|+.++
T Consensus 78 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqR 157 (638)
T PRK10636 78 QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMR 157 (638)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHH
Confidence 1111000000 0 00000000010012344456778899999
Q ss_pred ecCccEEEEeechhccccccCCCcE
Q 006782 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 156 v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+..+++++.++.++++|||++.+|+
T Consensus 158 v~LA~aL~~~P~lLLLDEPtn~LD~ 182 (638)
T PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDL 182 (638)
T ss_pred HHHHHHHccCCCEEEEcCCCCcCCH
Confidence 9999999999999999999999998
No 353
>PTZ00243 ABC transporter; Provisional
Probab=99.36 E-value=1.4e-13 Score=172.03 Aligned_cols=184 Identities=15% Similarity=0.157 Sum_probs=129.4
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCc
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTD 119 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d 119 (631)
+...||++|||.+++|+ .|||+|++|||||||+++|.+++ |..|.|.+||.+... +.+++++|+|.+|+
T Consensus 1321 ~~~~vL~~vsf~I~~Ge---kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~ 1397 (1560)
T PTZ00243 1321 GLPLVLRGVSFRIAPRE---KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397 (1560)
T ss_pred CCCceeecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc
Confidence 34569999999999999 79999999999999999999999 899999999986432 56899999999998
Q ss_pred hhhHHHHHHHhhcc--c-------------cc-ccc-cccccc----ccccCceeeeecCccEEEEe-echhccccccCC
Q 006782 120 YDTLLENIRGLKEG--K-------------AV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIE-GIYALSEKLRPL 177 (631)
Q Consensus 120 ~~tl~e~L~~L~~g--~-------------~I-~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvE-Gi~lL~dEl~~~ 177 (631)
. |+++||.....- . .+ ..| -||... ...++|+++++..+|+++-+ +.+++.||+++.
T Consensus 1398 g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSa 1476 (1560)
T PTZ00243 1398 G-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATAN 1476 (1560)
T ss_pred c-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 5 999999642110 0 01 012 133322 24678899999999999986 688888999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccC
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKST 257 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~ 257 (631)
+|.. ..+.+.+..+.. .++.| =++|-+..+.. ..++.+++|+.|
T Consensus 1477 LD~~-------te~~Iq~~L~~~-~~~~T---------------------------vI~IAHRl~ti-~~~DrIlVLd~G 1520 (1560)
T PTZ00243 1477 IDPA-------LDRQIQATVMSA-FSAYT---------------------------VITIAHRLHTV-AQYDKIIVMDHG 1520 (1560)
T ss_pred CCHH-------HHHHHHHHHHHH-CCCCE---------------------------EEEEeccHHHH-HhCCEEEEEECC
Confidence 9972 122222222221 12333 33333333221 235667788888
Q ss_pred CcccHHHHHHHhcc
Q 006782 258 RPVTVDEIKAVMSK 271 (631)
Q Consensus 258 ~~v~~~~Ik~vL~~ 271 (631)
..++.+.-.+++.+
T Consensus 1521 ~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1521 AVAEMGSPRELVMN 1534 (1560)
T ss_pred EEEEECCHHHHHhC
Confidence 88877777777753
No 354
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=4.7e-13 Score=154.33 Aligned_cols=133 Identities=16% Similarity=0.129 Sum_probs=100.7
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCC--CC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP--RL 117 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p--~l 117 (631)
+++++.++...+|++++|.+.+|+ ++||+||||||||||+++|+|.+ |+.|.|.+++. ..++|++|++ .+
T Consensus 316 ~~l~~~y~~~~il~~isl~i~~Ge---~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----~~igy~~Q~~~~~l 388 (638)
T PRK10636 316 EKVSAGYGDRIILDSIKLNLVPGS---RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG----IKLGYFAQHQLEFL 388 (638)
T ss_pred EeeEEEeCCeeeeccceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC----EEEEEecCcchhhC
Confidence 444555566789999999999999 89999999999999999999998 89999998742 2578888874 23
Q ss_pred CchhhHHHHHHHhhccc----------ccccc--ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 TDYDTLLENIRGLKEGK----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~g~----------~I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
....++.+++....... ....+ ..+...+..++|+.+++..+++++.++.+++.|||++.+|+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~ 463 (638)
T PRK10636 389 RADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDL 463 (638)
T ss_pred CccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 34445665553221100 01111 12334467888999999999999999999999999999998
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.36 E-value=1.2e-13 Score=172.51 Aligned_cols=182 Identities=18% Similarity=0.172 Sum_probs=130.6
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~~ 121 (631)
..||++|||.+++|+ .|||+|++|||||||+++|.+++ |..|.|.+||.+... +.+++++|+|.+|+.
T Consensus 1299 ~~vL~~is~~I~~Ge---kiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g- 1374 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGE---KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG- 1374 (1522)
T ss_pred cccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-
Confidence 469999999999999 79999999999999999999999 899999999986542 568999999999984
Q ss_pred hHHHHHHHhhcc---------------ccc-ccc-ccccccc----cccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 122 TLLENIRGLKEG---------------KAV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 122 tl~e~L~~L~~g---------------~~I-~~P-vyd~~~~----~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
|+++||.....- +.+ ..| -+|...+ ..++|+++++..+|+++-++.+++.||+++.+|.
T Consensus 1375 TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~ 1454 (1522)
T TIGR00957 1375 SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDL 1454 (1522)
T ss_pred cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 999999632110 001 111 2343332 3677899999999999999999999999999997
Q ss_pred EEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCcc
Q 006782 181 RVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPV 260 (631)
Q Consensus 181 kIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~v 260 (631)
. ....+.+..|.. ..++|.--|.|+. +.. ..++++++|+.|+.+
T Consensus 1455 ~-------Te~~Iq~~l~~~-~~~~TvI~IAHRl---------------------------~ti-~~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1455 E-------TDNLIQSTIRTQ-FEDCTVLTIAHRL---------------------------NTI-MDYTRVIVLDKGEVA 1498 (1522)
T ss_pred H-------HHHHHHHHHHHH-cCCCEEEEEecCH---------------------------HHH-HhCCEEEEEECCEEE
Confidence 2 122333333332 1244444444443 111 124566778888877
Q ss_pred cHHHHHHHhcc
Q 006782 261 TVDEIKAVMSK 271 (631)
Q Consensus 261 ~~~~Ik~vL~~ 271 (631)
+.|.-.+.+.+
T Consensus 1499 E~G~~~eLl~~ 1509 (1522)
T TIGR00957 1499 EFGAPSNLLQQ 1509 (1522)
T ss_pred EECCHHHHHhC
Confidence 77777676654
No 356
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.36 E-value=4.3e-13 Score=134.91 Aligned_cols=121 Identities=20% Similarity=0.216 Sum_probs=91.4
Q ss_pred eEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--ccccccccCCCCCCc--hhhHHHHHHHhhc
Q 006782 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRLTD--YDTLLENIRGLKE 132 (631)
Q Consensus 58 l~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--~~~i~~vfq~p~l~d--~~tl~e~L~~L~~ 132 (631)
|.+++|+ ++||+|+||||||||+++|++.+ |+.|.|.+||.... .+.++|++|++.++. ..++.+++.....
T Consensus 1 l~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGE---LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4577888 89999999999999999999998 89999999997532 246899999987632 2577777653210
Q ss_pred --------c-----ccc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 133 --------G-----KAV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 133 --------g-----~~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
. ..+ .. +..+......++|+.+++..+++++.++.+++.|||+..+|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~ 147 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMP 147 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 0 000 01 1223334567778899999999999999999999999999983
No 357
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.2e-13 Score=135.66 Aligned_cols=158 Identities=14% Similarity=0.146 Sum_probs=116.6
Q ss_pred eecCc-eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC---CCceEEEECCccccc--------ccccccc
Q 006782 45 FEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDSS--------RIIDGNF 112 (631)
Q Consensus 45 ~~~g~-~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll---p~~G~I~lDg~~~~~--------~~i~~vf 112 (631)
.+-.. ..+|+++|+.++.|+ +.+|.||||||||||+..|+|.- .+.|.|.+||.+... ..+...|
T Consensus 11 v~v~~~keILkgvnL~v~~GE---vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLaf 87 (251)
T COG0396 11 VEVEGKKEILKGVNLTVKEGE---VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAF 87 (251)
T ss_pred EEecCchhhhcCcceeEcCCc---EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEee
Confidence 33344 478999999999999 99999999999999999999986 589999999986543 3456689
Q ss_pred CCCCCCchhhHHHHHHHhhc----cccc---------------cccc--cccc-cccccCceeeeecCccEEEEeechhc
Q 006782 113 DDPRLTDYDTLLENIRGLKE----GKAV---------------QVPI--YDFK-SSSRIGYRTLEVPSSRIVIIEGIYAL 170 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~----g~~I---------------~~Pv--yd~~-~~~rs~~~~~~v~~a~VLIvEGi~lL 170 (631)
|.|.-++.-++.+.|....+ ...+ ..+. .++. ....++|++.+.....++++||.+++
T Consensus 88 Q~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~I 167 (251)
T COG0396 88 QYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAI 167 (251)
T ss_pred cCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEE
Confidence 99999988887777763222 1111 1110 1111 12457788888899999999999999
Q ss_pred cccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHH
Q 006782 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (631)
Q Consensus 171 ~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~ 212 (631)
+||+-+.+|+ ..++.+-+..+.+++.|.+.--|+|
T Consensus 168 LDE~DSGLDI-------dalk~V~~~i~~lr~~~~~~liITH 202 (251)
T COG0396 168 LDEPDSGLDI-------DALKIVAEGINALREEGRGVLIITH 202 (251)
T ss_pred ecCCCcCccH-------HHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9999999998 3556666666666666665544443
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=1.1e-12 Score=124.50 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=80.8
Q ss_pred ecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCC
Q 006782 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRL 117 (631)
Q Consensus 46 ~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l 117 (631)
.+....++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++..... ..+++++|
T Consensus 8 ~~~~~~~l~~~~~~i~~g~---~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q---- 80 (157)
T cd00267 8 RYGGRTALDNVSLTLKAGE---IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ---- 80 (157)
T ss_pred EeCCeeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee----
Confidence 3333468999999999999 89999999999999999999999 789999999864321 22344443
Q ss_pred CchhhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 TDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.++|+.+++..++.++.++.+++.|||+..+|.
T Consensus 81 ------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~ 113 (157)
T cd00267 81 ------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDP 113 (157)
T ss_pred ------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 556677788888899999999999999999997
No 359
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.34 E-value=1e-12 Score=149.11 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=105.5
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCC-CCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP-RLT 118 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p-~l~ 118 (631)
+++++.++...+|++|||.+.+|+ ++||+|+||||||||+++|+|.+ |+.|.|.+++. ..++|++|++ .++
T Consensus 328 ~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~v~q~~~~~~ 400 (556)
T PRK11819 328 ENLSKSFGDRLLIDDLSFSLPPGG---IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET----VKLAYVDQSRDALD 400 (556)
T ss_pred EeEEEEECCeeeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----eEEEEEeCchhhcC
Confidence 344455566679999999999999 89999999999999999999998 89999998542 2589999986 567
Q ss_pred chhhHHHHHHHhhc--c---cc---------cccc--ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 119 DYDTLLENIRGLKE--G---KA---------VQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 119 d~~tl~e~L~~L~~--g---~~---------I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+..++.+++..... + .. +... ..+...+..++|+.+++..+++++.++.+++.|||+..+|.
T Consensus 401 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 478 (556)
T PRK11819 401 PNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478 (556)
T ss_pred CCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 77899998864221 0 00 1111 12344567888999999999999999999999999999997
No 360
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.34 E-value=1e-12 Score=151.42 Aligned_cols=133 Identities=13% Similarity=0.135 Sum_probs=104.7
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCC-CCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP-RLT 118 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p-~l~ 118 (631)
+++++.++...++++++|.+.+|+ ++||+||||||||||+++|+|.+ |+.|.|.++. . ..++|++|++ .++
T Consensus 323 ~~l~~~~~~~~il~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~---~~i~y~~q~~~~l~ 395 (635)
T PRK11147 323 ENVNYQIDGKQLVKDFSAQVQRGD---KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGT-K---LEVAYFDQHRAELD 395 (635)
T ss_pred eeeEEEECCeEEEcCcEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC-C---cEEEEEeCcccccC
Confidence 445555666789999999999999 89999999999999999999998 8999998842 2 2588999986 467
Q ss_pred chhhHHHHHHHhhccc-----c--c-------cc--cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 119 DYDTLLENIRGLKEGK-----A--V-------QV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 119 d~~tl~e~L~~L~~g~-----~--I-------~~--Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+..++.+++....... . + .. ...+...+..++|+.+++..+++++..+.+++.|||++.+|+
T Consensus 396 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 396 PEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred CCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 7778999886532110 0 0 01 112333456888999999999999999999999999999998
No 361
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.33 E-value=1.3e-12 Score=150.06 Aligned_cols=132 Identities=13% Similarity=0.063 Sum_probs=105.0
Q ss_pred cCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEEECCcccc----ccccccccCCCCCC
Q 006782 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----SRIIDGNFDDPRLT 118 (631)
Q Consensus 47 ~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~---~G~I~lDg~~~~----~~~i~~vfq~p~l~ 118 (631)
++.+.+|+++++.+++|+ +++|+||||||||||+++|++.. ++ .|.|.++|.... .+.++|++|++.++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge---~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~ 111 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGE---LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFI 111 (617)
T ss_pred cCccccccCCEEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccC
Confidence 345678999999999999 99999999999999999999988 53 799999998543 24679999999999
Q ss_pred chhhHHHHHHHhhcc---cc---------c-------cc-cccccccc------cccCceeeeecCccEEEEeechhccc
Q 006782 119 DYDTLLENIRGLKEG---KA---------V-------QV-PIYDFKSS------SRIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 119 d~~tl~e~L~~L~~g---~~---------I-------~~-Pvyd~~~~------~rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
+..|+.|+|.....- .. + .. ...+...+ ..++|+++++..++.++-++.+++.|
T Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllD 191 (617)
T TIGR00955 112 PTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD 191 (617)
T ss_pred ccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEee
Confidence 999999999753210 00 0 01 11222222 36788999999999999999999999
Q ss_pred cccCCCcEE
Q 006782 173 KLRPLIDLR 181 (631)
Q Consensus 173 El~~~lDlk 181 (631)
||+..+|..
T Consensus 192 EPtsgLD~~ 200 (617)
T TIGR00955 192 EPTSGLDSF 200 (617)
T ss_pred CCCcchhHH
Confidence 999999973
No 362
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.33 E-value=5.5e-13 Score=165.64 Aligned_cols=163 Identities=17% Similarity=0.234 Sum_probs=119.1
Q ss_pred ceeEeecCc---eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEEC-Ccccc-------cccc
Q 006782 41 DTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD-NYNDS-------SRII 108 (631)
Q Consensus 41 ~~ls~~~g~---~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lD-g~~~~-------~~~i 108 (631)
++++|.++. ..+|++++|.+++|+ ++||+||||||||||+++|++++ |+.|.|.++ +.+.. .+.+
T Consensus 386 ~nVsf~Y~~~~~~~vL~~isl~i~~Ge---~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~I 462 (1466)
T PTZ00265 386 KNVRFHYDTRKDVEIYKDLNFTLTEGK---TYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKI 462 (1466)
T ss_pred EEEEEEcCCCCCCceeccceEEEcCCC---EEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhc
Confidence 344444442 469999999999999 89999999999999999999999 999999994 44321 2458
Q ss_pred ccccCCCCCCchhhHHHHHHHhhcc-------------------------------------------------------
Q 006782 109 DGNFDDPRLTDYDTLLENIRGLKEG------------------------------------------------------- 133 (631)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~g------------------------------------------------------- 133 (631)
++++|+|.+|+ .++.+||......
T Consensus 463 g~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 541 (1466)
T PTZ00265 463 GVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY 541 (1466)
T ss_pred cEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence 99999999997 5999999753210
Q ss_pred cc------------c-------ccc-ccc----cccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChh
Q 006782 134 KA------------V-------QVP-IYD----FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (631)
Q Consensus 134 ~~------------I-------~~P-vyd----~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d 189 (631)
.. + ..| .|+ ......++|+++++..+++++-++.++++||+++.+|.. .
T Consensus 542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~-------s 614 (1466)
T PTZ00265 542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK-------S 614 (1466)
T ss_pred ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH-------H
Confidence 00 0 011 011 112356788999999999999999999999999999973 3
Q ss_pred hHHHHHHHHHHHH-hCCCHHHHHHHH
Q 006782 190 FDLVKRVFRDIQR-VGQEPEEIIHQI 214 (631)
Q Consensus 190 ~rLiRRI~RDv~e-rG~s~e~Vi~q~ 214 (631)
...+....+++.. +|+|.--|.|+.
T Consensus 615 e~~i~~~L~~~~~~~g~TvIiIsHrl 640 (1466)
T PTZ00265 615 EYLVQKTINNLKGNENRITIIIAHRL 640 (1466)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 3444555555543 477765555554
No 363
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.33 E-value=7.8e-13 Score=149.98 Aligned_cols=133 Identities=20% Similarity=0.182 Sum_probs=105.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCC-CC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR-LT 118 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~-l~ 118 (631)
+++++.++...+|+++||.+.+|+ ++||+||||||||||+++|+|.+ |+.|.|.+++. ..++|++|++. ++
T Consensus 326 ~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~----~~i~~v~q~~~~~~ 398 (552)
T TIGR03719 326 ENLSKGFGDKLLIDDLSFKLPPGG---IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET----VKLAYVDQSRDALD 398 (552)
T ss_pred eeEEEEECCeeeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc----eEEEEEeCCccccC
Confidence 444555556679999999999999 99999999999999999999998 89999988542 25899999874 67
Q ss_pred chhhHHHHHHHhhc--c---cc---------cccc--ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 119 DYDTLLENIRGLKE--G---KA---------VQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 119 d~~tl~e~L~~L~~--g---~~---------I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+..++.+++..... + .. +... ..+...+..++|+.+++..+++++.++.+++.|||++.+|.
T Consensus 399 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~ 476 (552)
T TIGR03719 399 PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476 (552)
T ss_pred CCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 77899999865321 0 00 1111 12334467788999999999999999999999999999998
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.33 E-value=9.1e-13 Score=148.34 Aligned_cols=133 Identities=21% Similarity=0.197 Sum_probs=106.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d 119 (631)
.++++.+|.+.++++++|.+.+|+ .|||+|+||||||||+++|+|.+ |+.|.|..+.-. .++++.|++.+.+
T Consensus 7 ~~ls~~~g~~~l~~~~~l~~~~G~---riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~----~v~~l~Q~~~~~~ 79 (530)
T COG0488 7 ENLSLAYGDRPLLENVSLTLNPGE---RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGL----RVGYLSQEPPLDP 79 (530)
T ss_pred eeeEEeeCCceeecCCcceeCCCC---EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCc----eEEEeCCCCCcCC
Confidence 456667789999999999999999 69999999999999999999999 999999887532 5788999998887
Q ss_pred hhhHHHHHHHhhc-----------------------------------c-----------ccccccccccccccccCcee
Q 006782 120 YDTLLENIRGLKE-----------------------------------G-----------KAVQVPIYDFKSSSRIGYRT 153 (631)
Q Consensus 120 ~~tl~e~L~~L~~-----------------------------------g-----------~~I~~Pvyd~~~~~rs~~~~ 153 (631)
..++.+.+..-.. + .....+..+......+||++
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r 159 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWR 159 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHH
Confidence 7666665432100 0 00112222445567889999
Q ss_pred eeecCccEEEEeechhccccccCCCcE
Q 006782 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 154 ~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.++..+++++-++-++|+|||+++||+
T Consensus 160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~ 186 (530)
T COG0488 160 RRVALARALLEEPDLLLLDEPTNHLDL 186 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCH
Confidence 999999999999999999999999995
No 365
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=1.7e-12 Score=131.59 Aligned_cols=178 Identities=15% Similarity=0.184 Sum_probs=116.4
Q ss_pred ecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHH
Q 006782 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLL 124 (631)
Q Consensus 46 ~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~ 124 (631)
....+++|+||||.+.+|+ .+||+|+||||||||++.|+|.+ |+.|.|.+.|.-.+.-.++.-|+ +..|.+
T Consensus 36 ~~~~~~aL~disf~i~~Ge---~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~-----pelTGr 107 (249)
T COG1134 36 KVAEFWALKDISFEIYKGE---RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFD-----PELTGR 107 (249)
T ss_pred CcceEEEecCceEEEeCCC---EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCC-----cccchH
Confidence 4457889999999999999 79999999999999999999999 99999999986433222333332 223455
Q ss_pred HHHHHh----------------------hccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEE
Q 006782 125 ENIRGL----------------------KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRV 182 (631)
Q Consensus 125 e~L~~L----------------------~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkI 182 (631)
+|+... --|+.+..|+..++. |...+++-+-.+-+|+.+++.||..+.-|.
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSS-----GM~aRLaFsia~~~~pdILllDEvlavGD~-- 180 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSS-----GMYARLAFSVATHVEPDILLLDEVLAVGDA-- 180 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccH-----HHHHHHHHhhhhhcCCCEEEEehhhhcCCH--
Confidence 554321 113445566655553 444556666667777777777776654443
Q ss_pred EEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCcccH
Q 006782 183 SVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTV 262 (631)
Q Consensus 183 fVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~v~~ 262 (631)
.+.++-...+ +.+. +. ...=+.+.++.+-.+..||.+.+|+.+.....
T Consensus 181 --------~F~~K~~~rl-----------~e~~-----------~~--~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~ 228 (249)
T COG1134 181 --------AFQEKCLERL-----------NELV-----------EK--NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRME 228 (249)
T ss_pred --------HHHHHHHHHH-----------HHHH-----------Hc--CCEEEEEECCHHHHHHhcCeeEEEeCCEEEEc
Confidence 2233322222 1110 00 12244556677777889999999999887776
Q ss_pred HHHHHHhc
Q 006782 263 DEIKAVMS 270 (631)
Q Consensus 263 ~~Ik~vL~ 270 (631)
+...+++.
T Consensus 229 G~~~~vi~ 236 (249)
T COG1134 229 GSPEEVIP 236 (249)
T ss_pred CCHHHHHH
Confidence 76666654
No 366
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.31 E-value=4.7e-13 Score=126.86 Aligned_cols=136 Identities=16% Similarity=0.153 Sum_probs=109.9
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C---CceEEEECCcccc-----cccccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDS-----SRIIDGNF 112 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p---~~G~I~lDg~~~~-----~~~i~~vf 112 (631)
.++...+..-.|-++||++.+|+ |+.|.||||||||||+..+.|.+ + -.|.+.+++.... .+.+|+.|
T Consensus 7 nvsl~l~g~cLLa~~n~Tia~Ge---ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLF 83 (213)
T COG4136 7 NVSLRLPGSCLLANVNFTIAKGE---IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILF 83 (213)
T ss_pred eeeecCCCceEEEeeeEEecCCc---EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeee
Confidence 34455567778999999999999 99999999999999999999998 4 4799999987532 37899999
Q ss_pred CCCCCCchhhHHHHHHHhhc----ccc-----------cc-ccccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 113 DDPRLTDYDTLLENIRGLKE----GKA-----------VQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~----g~~-----------I~-~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
|++-+|++.++.+||.+... |+. +- --.++....+.+++++.++..-++++-++.+++.||+++
T Consensus 84 QD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 84 QDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred cccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 99999999999999864321 110 11 112444456788899999999999999999999999999
Q ss_pred CCcE
Q 006782 177 LIDL 180 (631)
Q Consensus 177 ~lDl 180 (631)
.+|.
T Consensus 164 ~LD~ 167 (213)
T COG4136 164 RLDV 167 (213)
T ss_pred HHHH
Confidence 8886
No 367
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.31 E-value=7.8e-13 Score=131.77 Aligned_cols=159 Identities=15% Similarity=0.156 Sum_probs=114.2
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCC--CC
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPR--LT 118 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~--l~ 118 (631)
...+|+++++.+.+|+ +|-|+|.||||||||++.|+|.+ |+.|.|.+||.+... ..++-+||+|. .+
T Consensus 18 ek~~l~~~sL~I~~g~---FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 18 EKRALNGLSLEIAEGD---FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred HHHHHhcCceeecCCc---eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 3458999999999999 89999999999999999999999 999999999986543 23566999985 58
Q ss_pred chhhHHHHHHHhhc-ccc-cc-----------------------ccccccccccccCceeeeecCccEEEEeechhcccc
Q 006782 119 DYDTLLENIRGLKE-GKA-VQ-----------------------VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (631)
Q Consensus 119 d~~tl~e~L~~L~~-g~~-I~-----------------------~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dE 173 (631)
+.+|+.||+.-... |+. -. .+..+-..+-.+||+++.+...-+..-.+.++|+||
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 88999999864322 110 00 112222234467788887777777777788888899
Q ss_pred ccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 006782 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISE 216 (631)
Q Consensus 174 l~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~ 216 (631)
-+..+|++ .+.. ....-.+-+.+...|.-.|+|.+.+
T Consensus 175 HTAALDPk---ta~~---vm~lT~kiV~~~klTtlMVTHnm~~ 211 (263)
T COG1101 175 HTAALDPK---TAEF---VMELTAKIVEEHKLTTLMVTHNMED 211 (263)
T ss_pred hhhcCCcc---hHHH---HHHHHHHHHHhcCCceEEEeccHHH
Confidence 99999997 2222 1222223334456777677776643
No 368
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.31 E-value=1e-12 Score=135.39 Aligned_cols=125 Identities=11% Similarity=0.180 Sum_probs=91.3
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEE-----------ECCccccc---------cccc
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-----------MDNYNDSS---------RIID 109 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~-----------lDg~~~~~---------~~i~ 109 (631)
.+++++++ +.+|+ ++||+||||||||||+++|++++ |+.|.|. ++|..... ..++
T Consensus 15 ~~l~~i~~-i~~Ge---~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 90 (255)
T cd03236 15 FKLHRLPV-PREGQ---VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVI 90 (255)
T ss_pred hhhhcCCC-CCCCC---EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhccccee
Confidence 58999995 89999 89999999999999999999999 8999995 66654321 1245
Q ss_pred cccCCCCCCchhhHHHHHHHhhccc-----------cccc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 110 GNFDDPRLTDYDTLLENIRGLKEGK-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~g~-----------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+++|++..++. ++.+++....... .... ...+......++++.+++..+++++.++.+++.|||+..
T Consensus 91 ~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~ 169 (255)
T cd03236 91 VKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSY 169 (255)
T ss_pred eecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 67787776653 4444443221100 0111 122333456677889999999999999999999999999
Q ss_pred CcE
Q 006782 178 IDL 180 (631)
Q Consensus 178 lDl 180 (631)
+|.
T Consensus 170 LD~ 172 (255)
T cd03236 170 LDI 172 (255)
T ss_pred CCH
Confidence 997
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.30 E-value=3.8e-13 Score=123.87 Aligned_cols=121 Identities=19% Similarity=0.239 Sum_probs=92.1
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCchhhHH
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDTLL 124 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~~tl~ 124 (631)
|++++|.+.+|+ +++|+|+||||||||+++|++.. |..|.|.+++..... ..++++++++.+++..++.
T Consensus 1 L~~v~~~i~~g~---~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGE---IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTS---EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCC---EEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999 89999999999999999999999 899999999874432 4578899998888877777
Q ss_pred HHHHH-----hhcc---ccccccccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 125 ENIRG-----LKEG---KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 125 e~L~~-----L~~g---~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
++... +... .......++...+..++++.+++..+++++-++.+++.|||++
T Consensus 78 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 ENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 65321 1111 1111223333346777888888888888888888888888764
No 370
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.30 E-value=3.1e-12 Score=147.48 Aligned_cols=136 Identities=15% Similarity=0.066 Sum_probs=90.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccc----c----ccccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----S----SRIIDGN 111 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~----~----~~~i~~v 111 (631)
.++++.++...+|++|||.+++|+ ++||+||||||||||+++|+|.+ |+.|.|.+++... . ....+++
T Consensus 7 ~~ls~~~~~~~il~~is~~i~~Ge---~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v 83 (635)
T PRK11147 7 HGAWLSFSDAPLLDNAELHIEDNE---RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTV 83 (635)
T ss_pred eeEEEEeCCceeEeCcEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCH
Confidence 344455566789999999999999 89999999999999999999998 8999999876311 0 0011222
Q ss_pred cCCCC-----CCchhhH-------------HHHHHHhh---------ccc-----------cccccccccccccccCcee
Q 006782 112 FDDPR-----LTDYDTL-------------LENIRGLK---------EGK-----------AVQVPIYDFKSSSRIGYRT 153 (631)
Q Consensus 112 fq~p~-----l~d~~tl-------------~e~L~~L~---------~g~-----------~I~~Pvyd~~~~~rs~~~~ 153 (631)
+|... .+...+. .+++..+. .+. .+... .+...+..++|+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSgGek 162 (635)
T PRK11147 84 YDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSGGWL 162 (635)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCHHHH
Confidence 22100 0000000 01111000 000 00111 2344567888999
Q ss_pred eeecCccEEEEeechhccccccCCCcE
Q 006782 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 154 ~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+++..+++++.++.+++.|||++.+|+
T Consensus 163 qRv~LAraL~~~P~lLLLDEPt~~LD~ 189 (635)
T PRK11147 163 RKAALGRALVSNPDVLLLDEPTNHLDI 189 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCH
Confidence 999999999999999999999999998
No 371
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=1.4e-12 Score=126.16 Aligned_cols=199 Identities=16% Similarity=0.153 Sum_probs=134.2
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccc--------c--------c
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--------S--------S 105 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~--------~--------~ 105 (631)
+++-||...-.++|||.+.+|+ +.||+|.||||||||+++|++.+ |+.|.|..+.... . .
T Consensus 12 lsk~Yg~~~gc~~vsF~l~PGe---VLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~R 88 (258)
T COG4107 12 LSKLYGPGKGCRDVSFDLYPGE---VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLR 88 (258)
T ss_pred hhhhhCCCcCccccceeecCCc---EEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhh
Confidence 3444566666899999999999 99999999999999999999999 9999998765311 1 0
Q ss_pred cccccccCCCCCC------chhhHHHHHH---------------HhhccccccccccccccccccCceeeeecCccEEEE
Q 006782 106 RIIDGNFDDPRLT------DYDTLLENIR---------------GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 106 ~~i~~vfq~p~l~------d~~tl~e~L~---------------~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIv 164 (631)
...+++.|+|.-= ....+.|.+. .+.+.-.|.....|-.....+++..+++..++.++.
T Consensus 89 TeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt 168 (258)
T COG4107 89 TEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVT 168 (258)
T ss_pred hccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhcc
Confidence 2357888887421 0111222221 112222333445666667788899999999999999
Q ss_pred eechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCC
Q 006782 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (631)
Q Consensus 165 EGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (631)
.+.+.|.||++..+|..| .+- -++++|-+.+++ ..|-+|+.++....
T Consensus 169 ~PrLvfMDEPTGGLDVSV--QAR-LLDllrgLv~~l------------------------------~la~viVTHDl~Va 215 (258)
T COG4107 169 RPRLVFMDEPTGGLDVSV--QAR-LLDLLRGLVREL------------------------------GLAVVIVTHDLAVA 215 (258)
T ss_pred CCceEEecCCCCCcchhh--HHH-HHHHHHHHHHhc------------------------------CceEEEEechhHHH
Confidence 999999999999999752 111 122233333322 34566666665554
Q ss_pred CCCCCceeeeccCCcccHHHHHHHhcccccccc
Q 006782 245 TGFQNPTYILKSTRPVTVDEIKAVMSKEHTETT 277 (631)
Q Consensus 245 ~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~ 277 (631)
+=..++..+||.+..++.+-...+|..++...+
T Consensus 216 rLla~rlmvmk~g~vve~GLTDrvLDDP~hPYT 248 (258)
T COG4107 216 RLLADRLMVMKQGQVVESGLTDRVLDDPHHPYT 248 (258)
T ss_pred HHhhhcceeecCCCEeccccccccccCCCCchH
Confidence 555677788898888877777777776654433
No 372
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.5e-12 Score=127.45 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=109.5
Q ss_pred ccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc------cccccc
Q 006782 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGN 111 (631)
Q Consensus 39 v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~------~~i~~v 111 (631)
..+.++.+++.+.++.+++|.+.+|+ ++-|.||||||||||+|+|+|++ |+.|.|.+++..... +.+-|.
T Consensus 4 ~a~~L~~~R~e~~lf~~L~f~l~~Ge---~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 4 EAENLSCERGERTLFSDLSFTLNAGE---ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred hhhhhhhccCcceeecceeEEEcCCC---EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHh
Confidence 34667788899999999999999999 89999999999999999999999 999999999864432 234455
Q ss_pred cCCCCCCchhhHHHHHHHhhc--cc--ccc---------c-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 112 FDDPRLTDYDTLLENIRGLKE--GK--AVQ---------V-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~--g~--~I~---------~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
-..+.+-..+|+.|||.++.. +. ... . -.-|...++.+.|+..+++.++.++--..+-+.|||+..
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ta 160 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTA 160 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccc
Confidence 556777788899999998765 11 111 1 112223355677788899999999999999999999999
Q ss_pred CcE
Q 006782 178 IDL 180 (631)
Q Consensus 178 lDl 180 (631)
+|.
T Consensus 161 LDk 163 (209)
T COG4133 161 LDK 163 (209)
T ss_pred cCH
Confidence 986
No 373
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=99.29 E-value=2.3e-11 Score=118.31 Aligned_cols=132 Identities=25% Similarity=0.359 Sum_probs=106.1
Q ss_pred cccccceeeeecCCCCCCchhccceeeeeec-CCEEEEEEeeeecCCCeeecceeEeeee-----------hhhHHHHhh
Q 006782 274 TETTEETYDIYLLPPGEDPDACQSYLRMRNR-DGKYNLMFEEWVTDSPFIISPRITFEVS-----------VRLLGGLMA 341 (631)
Q Consensus 274 ~~~~~~f~DIYl~pP~~d~~~tde~LRvR~~-dg~~~LtykG~~~d~p~isrp~~ef~V~-----------v~il~GL~~ 341 (631)
......+.|+||.+|..++...+.|||+|.. ++...+|||++..+.+ +++.++.|+ -.+...|.+
T Consensus 29 ~~~~~~~~d~Y~dt~~~~L~~~~~~lRiR~~~~~~~~lTlK~~~~~~~---~~e~~~~~~r~e~e~~i~~~~~~~~~l~~ 105 (185)
T PF01928_consen 29 FPKEEHQTDTYFDTPDRDLRKAGIALRIRRENGDGWYLTLKGPGSDGP---REEIEFEVSREEYEAPISDAEEMREILEA 105 (185)
T ss_dssp EEEEEEEEEEEEEETTTHHHHTTSEEEEEEETTTEEEEEEEEESSSSS---EEEEEEEESHHCCEEEHSHHHHHHHHHHH
T ss_pred cCeEEEEEEEEEeCCChhHHhCCcEEEEEeecCCccEEEEEccCccCc---ccccceeecchhhhccccchHHHHHHHHH
Confidence 3444456799999999999999999999964 5555599999998886 444444443 234667899
Q ss_pred cCCeEEEEEEeeeeEeecCcEEEEeeccccc-CcceEEEEec--cHHHHHHHHHH-------cCCCC-CccchhhHHHH
Q 006782 342 LGYTIATILKRSSHIFYDDRVCVKTDWLEQL-NRKYVQVQGR--DRLYVKYVGEQ-------LGLDG-SYVPRTYIEQI 409 (631)
Q Consensus 342 LGy~~~a~v~k~re~y~~~~~~i~lD~ve~L-g~~FveI~g~--~~~~v~~~~~~-------Lgl~g-~~i~kSYLEli 409 (631)
+||.+.+.+.+.|..|..+++.|++|+++++ | .|+||+.. +.+.+.+++.+ ||+.. +.++++|++|+
T Consensus 106 l~l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~-~~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~r~y~~l~ 183 (185)
T PF01928_consen 106 LGLRPVARIEKKRRSYRLEGVEVELDEVDGLPG-TFLEIEIESEDEEDLKEAAEEILALLNELGISENSKIERSYLELL 183 (185)
T ss_dssp TTCEEEEEEEEEEEEEEETTEEEEEEEETTTTE-EEEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHHSHHHHHC
T ss_pred hcCceeEEEEEEEEEEEECCEEEEEEEEecceE-EEEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHHHHHHHhh
Confidence 9999999999999999999999999999999 7 89999444 55555555555 99987 66999999886
No 374
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.29 E-value=1.4e-12 Score=150.99 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=98.9
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHHHHH
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENI 127 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L 127 (631)
...+++++||.+++|+ ++||+||||||||||+++|+|++ |..|.|.+++ ...+++++|+|.+++. ++.+++
T Consensus 464 ~~~il~~isl~i~~Ge---~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----~~~i~~v~Q~~~l~~~-tv~eni 535 (659)
T TIGR00954 464 GDVLIESLSFEVPSGN---HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----KGKLFYVPQRPYMTLG-TLRDQI 535 (659)
T ss_pred CCeeeecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----CCcEEEECCCCCCCCc-CHHHHH
Confidence 3469999999999999 89999999999999999999998 7889998875 3468999999988876 999998
Q ss_pred HHhh-------cc---ccc-------cc------cc-ccc---ccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 128 RGLK-------EG---KAV-------QV------PI-YDF---KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 128 ~~L~-------~g---~~I-------~~------Pv-yd~---~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.... .+ ..+ .. |. |+. ..+..++|+++++..+++++-++.+++.||+++.+|.
T Consensus 536 ~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~ 615 (659)
T TIGR00954 536 IYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV 615 (659)
T ss_pred hcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 6421 00 000 00 00 010 1246788999999999999999999999999999998
No 375
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.28 E-value=7.7e-13 Score=164.97 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=103.5
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc-------cccccccCCCCCCch
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGNFDDPRLTDY 120 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~ 120 (631)
+...+|++|||.+++|+ .|||+|+||||||||+++|.++++..|.|.+||.+... +.+++++|+|.+|+.
T Consensus 1230 ~~~~vL~~is~~I~~Ge---kvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G 1306 (1490)
T TIGR01271 1230 AGRAVLQDLSFSVEGGQ---RVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG 1306 (1490)
T ss_pred CCcceeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc
Confidence 44679999999999999 69999999999999999999998778999999986532 568999999999984
Q ss_pred hhHHHHHHHhhccc---------c------c-ccc-ccccccc----cccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 121 DTLLENIRGLKEGK---------A------V-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 121 ~tl~e~L~~L~~g~---------~------I-~~P-vyd~~~~----~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
|+++||....... . + ..| -+|...+ ..++|+++++..+|+++-.+.+++.||+++.+|
T Consensus 1307 -TIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD 1385 (1490)
T TIGR01271 1307 -TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385 (1490)
T ss_pred -CHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCC
Confidence 9999995432100 0 0 011 1222222 357789999999999999999999999999999
Q ss_pred E
Q 006782 180 L 180 (631)
Q Consensus 180 l 180 (631)
.
T Consensus 1386 ~ 1386 (1490)
T TIGR01271 1386 P 1386 (1490)
T ss_pred H
Confidence 7
No 376
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.28 E-value=7.7e-12 Score=121.92 Aligned_cols=160 Identities=21% Similarity=0.278 Sum_probs=105.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc--------ccc----cc-ccCCCCCCchhhHHHHHHH----h
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS--------RII----DG-NFDDPRLTDYDTLLENIRG----L 130 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~--------~~i----~~-vfq~p~l~d~~tl~e~L~~----L 130 (631)
+|||+|+.||||||+++.|.. + +...|+.|.....- ..+ +- ++.....++...+.+.+.. +
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 78 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L-GIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKR 78 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C-CCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHH
Confidence 489999999999999999998 4 56678888752210 011 10 1111233444444444432 2
Q ss_pred hccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHH
Q 006782 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (631)
Q Consensus 131 ~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~V 210 (631)
...+.+.+|.+......... ......++++|+++++...+...+|..|||++|.++++.|.+.|+ |.+.+++
T Consensus 79 ~~l~~i~hp~i~~~~~~~~~----~~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd----~~s~~~~ 150 (179)
T cd02022 79 KKLEAITHPLIRKEIEEQLA----EARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRD----GLSEEEA 150 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 22345666755444332221 111236899999999988888999999999999988776666554 8899999
Q ss_pred HHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 211 i~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
..++... .+. ++.+..||+||.|+.+.
T Consensus 151 ~~r~~~Q-~~~-----~~~~~~aD~vI~N~~~~ 177 (179)
T cd02022 151 EARIASQ-MPL-----EEKRARADFVIDNSGSL 177 (179)
T ss_pred HHHHHhc-CCH-----HHHHHhCCEEEECcCCC
Confidence 9888654 222 34568899999998765
No 377
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.27 E-value=2.5e-12 Score=159.48 Aligned_cols=156 Identities=15% Similarity=0.068 Sum_probs=116.0
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC----CceEEEECCcccc---ccccccccCCCCCCch
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS---SRIIDGNFDDPRLTDY 120 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp----~~G~I~lDg~~~~---~~~i~~vfq~p~l~d~ 120 (631)
+...+|++|++.+++|+ ++||+||||||||||+++|++..+ ..|.|.+||.... .+.++|++|++.+++.
T Consensus 774 ~~~~iL~~vs~~i~~Ge---~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~ 850 (1394)
T TIGR00956 774 EKRVILNNVDGWVKPGT---LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPT 850 (1394)
T ss_pred CCcEeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCC
Confidence 35679999999999999 899999999999999999999983 5699999997542 2468999999888888
Q ss_pred hhHHHHHHHhhc---cccc----------------cc-cccccccc----cccCceeeeecCccEEEEeec-hhcccccc
Q 006782 121 DTLLENIRGLKE---GKAV----------------QV-PIYDFKSS----SRIGYRTLEVPSSRIVIIEGI-YALSEKLR 175 (631)
Q Consensus 121 ~tl~e~L~~L~~---g~~I----------------~~-Pvyd~~~~----~rs~~~~~~v~~a~VLIvEGi-~lL~dEl~ 175 (631)
.|++|+|..... ...+ .. +..+...+ ..++|+++++..+..++.++. +++.|||+
T Consensus 851 ~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPT 930 (1394)
T TIGR00956 851 STVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPT 930 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCC
Confidence 999999975321 0000 00 11222222 467789999999999999995 88999999
Q ss_pred CCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHH
Q 006782 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (631)
Q Consensus 176 ~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q 213 (631)
+.+|.. ....+.++.++++..|.++--++|+
T Consensus 931 sgLD~~-------~~~~i~~~L~~la~~g~tvI~t~H~ 961 (1394)
T TIGR00956 931 SGLDSQ-------TAWSICKLMRKLADHGQAILCTIHQ 961 (1394)
T ss_pred CCCCHH-------HHHHHHHHHHHHHHcCCEEEEEecC
Confidence 999973 2334455555555556654444443
No 378
>PLN03073 ABC transporter F family; Provisional
Probab=99.25 E-value=3.8e-12 Score=148.41 Aligned_cols=131 Identities=15% Similarity=0.067 Sum_probs=94.6
Q ss_pred ceeEeecC-ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCC
Q 006782 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (631)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~ 118 (631)
+++++.++ ...+|+++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+++. ..++|++|++..
T Consensus 512 ~~ls~~y~~~~~il~~vsl~i~~Ge---~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~----~~igyv~Q~~~~- 583 (718)
T PLN03073 512 SDASFGYPGGPLLFKNLNFGIDLDS---RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK----VRMAVFSQHHVD- 583 (718)
T ss_pred EeeEEEeCCCCeeEeccEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc----eeEEEEeccccc-
Confidence 44445553 3468999999999999 89999999999999999999999 89999988652 357888887521
Q ss_pred chhhHHHHHH-Hh---hcc----------cccccc--ccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 119 DYDTLLENIR-GL---KEG----------KAVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 119 d~~tl~e~L~-~L---~~g----------~~I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
..++.++.. .+ ..+ ...... ..+......++|+.+++..+++++.++.+++.|||++.+|.
T Consensus 584 -~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~ 660 (718)
T PLN03073 584 -GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDL 660 (718)
T ss_pred -cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 111211110 00 000 001111 12334467788999999999999999999999999999997
No 379
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=99.24 E-value=1e-10 Score=114.91 Aligned_cols=120 Identities=14% Similarity=0.022 Sum_probs=103.2
Q ss_pred ccceeeeecCCCCCCchhccceeeeeecCCEEEEEEeeeecCCCeeecceeEeeee---------------hhhHHHHhh
Q 006782 277 TEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVS---------------VRLLGGLMA 341 (631)
Q Consensus 277 ~~~f~DIYl~pP~~d~~~tde~LRvR~~dg~~~LtykG~~~d~p~isrp~~ef~V~---------------v~il~GL~~ 341 (631)
...+.|+||..|++++...+.+||+|..|+.+.+|||+|.. ..+++.+..|+ -.+...|.+
T Consensus 26 ~~~q~n~Yfdtp~~~l~~~~~aLRiR~~~~~~~~TlK~~~~----~~r~E~e~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 101 (180)
T cd07762 26 FFKQTNYYFDTPDFALKKKHSALRIREKEGKAELTLKVPQE----VGLLETNQPLTLEEAEKLIKGGTLPEGEILDKLKE 101 (180)
T ss_pred cEEEEEEEEeCCCHHHHhCCcEEEEEeeCCeEEEEEeeCCC----CCCcEEeecCCHHHHHHHhccccCCchHHHHHHHH
Confidence 34456999999999999999999999999999999999985 45888777776 256778899
Q ss_pred cCCeE-----EEEEEeeeeEeecCcEEEEeecccccCcceEEEEe------ccHHHHHHHHHHcCCCCCc
Q 006782 342 LGYTI-----ATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQG------RDRLYVKYVGEQLGLDGSY 400 (631)
Q Consensus 342 LGy~~-----~a~v~k~re~y~~~~~~i~lD~ve~Lg~~FveI~g------~~~~~v~~~~~~Lgl~g~~ 400 (631)
+||.. ++.+.+.|..|..++.++|||++++||..++||+- ..++.+.+++++|||.-.+
T Consensus 102 lg~~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~e~~~~~~~~~~~~~ll~~~gi~~~~ 171 (180)
T cd07762 102 LGIDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYEVDDYEAGKKAFLELLKQYNIPYRP 171 (180)
T ss_pred hCCCcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEEEeCCHHHHHHHHHHHHHHcCCCccc
Confidence 99985 99999999999999999999999999955588853 3678899999999998644
No 380
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.24 E-value=9.2e-13 Score=135.10 Aligned_cols=185 Identities=11% Similarity=0.146 Sum_probs=116.3
Q ss_pred eecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc------ccccc-------
Q 006782 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDG------- 110 (631)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~------~~i~~------- 110 (631)
..+..+.++++|||.+++|+ ++|++|+|||||||++|+|.|.+ |+.|.|.+.|+.... +.+++
T Consensus 32 ~k~~~~~AVqdisf~IP~G~---ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~q 108 (325)
T COG4586 32 RKERSIEAVQDISFEIPKGE---IVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQ 108 (325)
T ss_pred chhhhhhhhheeeeecCCCc---EEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhhe
Confidence 34445678999999999999 99999999999999999999999 999999999986543 22333
Q ss_pred -ccCCCCCCchhhHHHHHHHh------------hccccccccccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 111 -NFDDPRLTDYDTLLENIRGL------------KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 111 -vfq~p~l~d~~tl~e~L~~L------------~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
.|+.| +.+...+.+.+... .+--.++ +...+..+..+-|++.++..+..++-.+.++|+||++=.
T Consensus 109 l~Wdlp-~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~-~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 109 LWWDLP-ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLE-GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred eeeech-hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcch-hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 34444 33333344333221 1100010 111222244455667777888888889999999999988
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHH-HhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEE-eCCCCCCCCCCCceeeec
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI-INKFNPFTGFQNPTYILK 255 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~-erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII-~N~~~p~~~~~n~v~iLK 255 (631)
+|.. ....+|+..+... +++. -|+. .+.|+--...|++|+.++
T Consensus 187 LDV~-------aq~~ir~Flke~n~~~~a----------------------------TVllTTH~~~di~~lc~rv~~I~ 231 (325)
T COG4586 187 LDVN-------AQANIREFLKEYNEERQA----------------------------TVLLTTHIFDDIATLCDRVLLID 231 (325)
T ss_pred cchh-------HHHHHHHHHHHHHHhhCc----------------------------eEEEEecchhhHHHhhhheEEee
Confidence 8873 1122333333322 1222 2222 223333356789999999
Q ss_pred cCCcccHHHHHHHh
Q 006782 256 STRPVTVDEIKAVM 269 (631)
Q Consensus 256 s~~~v~~~~Ik~vL 269 (631)
.|..+..+.+....
T Consensus 232 ~Gqlv~dg~l~~l~ 245 (325)
T COG4586 232 QGQLVFDGTLAQLQ 245 (325)
T ss_pred CCcEeecccHHHHH
Confidence 98877655444433
No 381
>PRK13409 putative ATPase RIL; Provisional
Probab=99.22 E-value=4.3e-12 Score=145.18 Aligned_cols=168 Identities=16% Similarity=0.217 Sum_probs=114.9
Q ss_pred Cceeeeeccce----eEeecCc-eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEE--------
Q 006782 32 DRYEIVPIEDT----LSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-------- 97 (631)
Q Consensus 32 ~~~ei~~v~~~----ls~~~g~-~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~-------- 97 (631)
+.+.|+++++. +++.||. ..+|++++ .+.+|+ ++||+||||||||||+++|+|.+ |+.|.|.
T Consensus 64 ~a~~i~~~p~~~~~~~~~~yg~~~~~L~~l~-~i~~Ge---v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~ 139 (590)
T PRK13409 64 DAISIVNLPEELEEEPVHRYGVNGFKLYGLP-IPKEGK---VTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEV 139 (590)
T ss_pred ceEEEeeCchhhccCceEEecCCceeEecCC-cCCCCC---EEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHH
Confidence 45677766543 5566765 35899999 899999 99999999999999999999998 8999997
Q ss_pred ---ECCccccc---------ccccccc----CCCCCCchhhHHHHHHHhhccc-------cccc-cccccccccccCcee
Q 006782 98 ---MDNYNDSS---------RIIDGNF----DDPRLTDYDTLLENIRGLKEGK-------AVQV-PIYDFKSSSRIGYRT 153 (631)
Q Consensus 98 ---lDg~~~~~---------~~i~~vf----q~p~l~d~~tl~e~L~~L~~g~-------~I~~-Pvyd~~~~~rs~~~~ 153 (631)
++|..... ..+++.+ +.|.++. .++.+++....... .+.. ...+......++|+.
T Consensus 140 ~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~ 218 (590)
T PRK13409 140 LKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGEL 218 (590)
T ss_pred HHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhc-chHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 77653211 1223334 4444433 26777664321110 1111 123555667888999
Q ss_pred eeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHH
Q 006782 154 LEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (631)
Q Consensus 154 ~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~ 212 (631)
+++..+.+++.++.+++.|||++.+|.. ....+.++.+++.+ |.++--+.|
T Consensus 219 qrv~ia~al~~~p~lllLDEPts~LD~~-------~~~~l~~~i~~l~~-g~tvIivsH 269 (590)
T PRK13409 219 QRVAIAAALLRDADFYFFDEPTSYLDIR-------QRLNVARLIRELAE-GKYVLVVEH 269 (590)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHH-------HHHHHHHHHHHHHC-CCEEEEEeC
Confidence 9999999999999999999999999983 33444555555555 655433333
No 382
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.21 E-value=8.3e-12 Score=122.15 Aligned_cols=132 Identities=14% Similarity=0.100 Sum_probs=90.3
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc--ccccccccCCCCCCchhhHHHH
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--SRIIDGNFDDPRLTDYDTLLEN 126 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~--~~~i~~vfq~p~l~d~~tl~e~ 126 (631)
...+++++||.+++|+ +++|+||||||||||++++. ++.|.+.+++.... ...+.+++| .+.
T Consensus 7 ~~~~l~~isl~i~~G~---~~~l~G~nG~GKSTLl~~il---~~~G~v~~~~~~~~~~~~~~~~~~q----------~~~ 70 (176)
T cd03238 7 NVHNLQNLDVSIPLNV---LVVVTGVSGSGKSTLVNEGL---YASGKARLISFLPKFSRNKLIFIDQ----------LQF 70 (176)
T ss_pred eeeeecceEEEEcCCC---EEEEECCCCCCHHHHHHHHh---hcCCcEEECCcccccccccEEEEhH----------HHH
Confidence 4568999999999999 89999999999999999885 36788887765211 112444444 233
Q ss_pred HHHhhccccccccccccccccccCceeeeecCccEEEEe--echhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhC
Q 006782 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIE--GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVG 204 (631)
Q Consensus 127 L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvE--Gi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG 204 (631)
+..+. +.....+......++++.+++..++.++.+ +.+++.|||+..+|.. ..+.+.++.+++.++|
T Consensus 71 l~~~~----L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~-------~~~~l~~~l~~~~~~g 139 (176)
T cd03238 71 LIDVG----LGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ-------DINQLLEVIKGLIDLG 139 (176)
T ss_pred HHHcC----CCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHhCC
Confidence 32221 110112333456777888999999999999 9999999999999973 3334444445544445
Q ss_pred CCH
Q 006782 205 QEP 207 (631)
Q Consensus 205 ~s~ 207 (631)
.++
T Consensus 140 ~tv 142 (176)
T cd03238 140 NTV 142 (176)
T ss_pred CEE
Confidence 553
No 383
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6.1e-12 Score=135.32 Aligned_cols=184 Identities=20% Similarity=0.252 Sum_probs=133.4
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCc
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTD 119 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d 119 (631)
+.+++|++++|.++.|+ .++|+|++|+||||+++.|-..+ +..|.|.+||++... +.++.++|+..+|+
T Consensus 274 ~~r~iL~~isf~i~~g~---tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFN 350 (497)
T COG5265 274 PRRPILNGISFTIPLGK---TVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN 350 (497)
T ss_pred ccchhhcCccccccCcc---EEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehh
Confidence 35679999999999999 79999999999999999999999 899999999986542 56899999998886
Q ss_pred hhhHHHHHHHhhcc----------------ccc-ccc-cccccccc----ccCceeeeecCccEEEEeechhccccccCC
Q 006782 120 YDTLLENIRGLKEG----------------KAV-QVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 120 ~~tl~e~L~~L~~g----------------~~I-~~P-vyd~~~~~----rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+++..|++..+.. ..+ ..| -|+-..++ .++|++++++.++.++-++..++.||.++.
T Consensus 351 -Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsa 429 (497)
T COG5265 351 -DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSA 429 (497)
T ss_pred -hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhH
Confidence 5777777643321 001 123 25544444 468899999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccC
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKST 257 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~ 257 (631)
+|.+ -.+.+.+-.+++. +|+|.--|-|+.. +.-.||-|| |||.|
T Consensus 430 ldt~-------te~~iq~~l~~~~-~~rttlviahrls-------------ti~~adeii---------------vl~~g 473 (497)
T COG5265 430 LDTH-------TEQAIQAALREVS-AGRTTLVIAHRLS-------------TIIDADEII---------------VLDNG 473 (497)
T ss_pred hhhh-------HHHHHHHHHHHHh-CCCeEEEEeehhh-------------hccCCceEE---------------EeeCC
Confidence 9974 2233333334433 5766555555541 223445443 56777
Q ss_pred CcccHHHHHHHhcc
Q 006782 258 RPVTVDEIKAVMSK 271 (631)
Q Consensus 258 ~~v~~~~Ik~vL~~ 271 (631)
+.++-|.-.+.|..
T Consensus 474 ~i~erg~h~~ll~~ 487 (497)
T COG5265 474 RIVERGTHEELLAA 487 (497)
T ss_pred EEEecCcHHHHHHc
Confidence 77776666677654
No 384
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.21 E-value=1.8e-11 Score=118.25 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=108.0
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccc---------------cccccccccC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND---------------SSRIIDGNFD 113 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~---------------~~~~i~~vfq 113 (631)
.+|++++||.+..|+ .+.+-|||||||||++++|-+.+ |+.|.|.+..... ..+.+||+.|
T Consensus 24 LpV~~~vslsV~aGE---CvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQ 100 (235)
T COG4778 24 LPVLRNVSLSVNAGE---CVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQ 100 (235)
T ss_pred eeeeeceeEEecCcc---EEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHH
Confidence 469999999999999 79999999999999999999988 9999987654311 1145788888
Q ss_pred CCCCCchhhHHHHHHHh------------------hccccccccccccccccccCceeeeecCccEEEEeechhcccccc
Q 006782 114 DPRLTDYDTLLENIRGL------------------KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L------------------~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~ 175 (631)
.....+.-...+.++.. ...-.+.-..++......+||+.+++..++-+|+|-.++|+||++
T Consensus 101 FLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPT 180 (235)
T COG4778 101 FLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPT 180 (235)
T ss_pred HHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCc
Confidence 65555544444444331 111122223466666788899999999999999999999999999
Q ss_pred CCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 176 ~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
..+|.+ .-...-.+.+..+.+|..+
T Consensus 181 asLDa~-------Nr~vVveli~e~Ka~GaAl 205 (235)
T COG4778 181 ASLDAT-------NRAVVVELIREAKARGAAL 205 (235)
T ss_pred cccccc-------chHHHHHHHHHHHhcCceE
Confidence 999974 2233445556666667544
No 385
>PLN03140 ABC transporter G family member; Provisional
Probab=99.19 E-value=1.6e-11 Score=152.57 Aligned_cols=129 Identities=14% Similarity=0.161 Sum_probs=103.6
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEEECCcccc----ccccccccCCCCCCch
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~---~G~I~lDg~~~~----~~~i~~vfq~p~l~d~ 120 (631)
.+.+|+++++.+++|+ +++|+||||||||||+++|++.+ |+ .|.|.++|.... .+.++|++|++.+++.
T Consensus 177 ~~~IL~~vs~~i~~Ge---~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 177 KLTILKDASGIIKPSR---MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV 253 (1470)
T ss_pred cceeccCCeEEEeCCe---EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCc
Confidence 4569999999999999 99999999999999999999998 66 899999997532 3468999999999999
Q ss_pred hhHHHHHHHhhc--c--cc------c---c--------------------------------cccc-----------ccc
Q 006782 121 DTLLENIRGLKE--G--KA------V---Q--------------------------------VPIY-----------DFK 144 (631)
Q Consensus 121 ~tl~e~L~~L~~--g--~~------I---~--------------------------------~Pvy-----------d~~ 144 (631)
.|+.|+|..... + .. . + ...+ +..
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 999999975321 0 00 0 0 0000 111
Q ss_pred cccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 145 SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 145 ~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
....++|+++++..+..++-++.+++.||++..+|.
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs 369 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 369 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccH
Confidence 235678999999999999999999999999999997
No 386
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.18 E-value=2.6e-11 Score=120.50 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=103.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc-----c-------cccc-cccCCCCCCchhhHHHHHH----Hh
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-----S-------RIID-GNFDDPRLTDYDTLLENIR----GL 130 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~-----~-------~~i~-~vfq~p~l~d~~tl~e~L~----~L 130 (631)
+|||+|++||||||+++.+.+. +.-.|..|..... . ...| -+++.....|...+.+.+. .+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~--g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~ 78 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL--GAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKL 78 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC--CCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHH
Confidence 4899999999999999999875 4556666654110 0 0111 1222223345444444442 12
Q ss_pred hccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHH
Q 006782 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (631)
Q Consensus 131 ~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~V 210 (631)
..-+.+.+|........... ......++++|.++++.......||..|||++|.++++.|.+.| .|.+.+++
T Consensus 79 ~~L~~i~hP~v~~~~~~~~~----~~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R----~g~s~e~a 150 (196)
T PRK14732 79 KALNELIHPLVRKDFQKILQ----TTAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISR----DGMKKEDV 150 (196)
T ss_pred HHHHHHhhHHHHHHHHHHHH----HHhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHc----CCCCHHHH
Confidence 22244556644332222111 01123688999999998888889999999999999877666655 48899999
Q ss_pred HHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 211 i~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
..++... . .+++.+..||+||.|+.+.
T Consensus 151 ~~ri~~Q-~-----~~~~k~~~aD~vI~N~~~~ 177 (196)
T PRK14732 151 LARIASQ-L-----PITEKLKRADYIVRNDGNR 177 (196)
T ss_pred HHHHHHc-C-----CHHHHHHhCCEEEECCCCH
Confidence 8888553 2 3556788999999988755
No 387
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.18 E-value=3.9e-11 Score=120.37 Aligned_cols=169 Identities=22% Similarity=0.243 Sum_probs=126.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCC-----------C-ceEEEECCcccccccccc---------ccCCCCCCchhhHHH
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMP-----------S-IAVITMDNYNDSSRIIDG---------NFDDPRLTDYDTLLE 125 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp-----------~-~G~I~lDg~~~~~~~i~~---------vfq~p~l~d~~tl~e 125 (631)
..+|++|+.|+||||++..+....| . +-.|.||||+...+.+.. .-..|..||...+..
T Consensus 120 ~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~lfl~ 199 (323)
T KOG2702|consen 120 ELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSNLFLQ 199 (323)
T ss_pred heeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHHHHHH
Confidence 4899999999999999999988543 1 234789999765432211 122456788888888
Q ss_pred HHHHhh--ccccccccccccccccccCceeeeecCccEEEEeechhccc-----cccCCCcEEEEEEcChhhHHHHHHHH
Q 006782 126 NIRGLK--EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFR 198 (631)
Q Consensus 126 ~L~~L~--~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d-----El~~~lDlkIfVdad~d~rLiRRI~R 198 (631)
.+..++ .-..+..|.||+..+..+......-...+++|+||.|+|++ .+..++|.+.|++.+.+....|--.|
T Consensus 200 l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~RVa~R 279 (323)
T KOG2702|consen 200 LCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEERVAKR 279 (323)
T ss_pred HHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHHHHHHH
Confidence 888777 35678999999999998887666667889999999999986 36789999999999998877776666
Q ss_pred HHHHhC--CCHHHHHHHHHhccccchhhcccCCCCCCeEEE
Q 006782 199 DIQRVG--QEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (631)
Q Consensus 199 Dv~erG--~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII 237 (631)
.+. .| .++++...++..+.++.- ++|+..+-.+|+||
T Consensus 280 Hl~-sGl~~t~~ea~er~d~ND~~N~-~~I~k~~i~~D~iv 318 (323)
T KOG2702|consen 280 HLQ-SGLVTTIAEARERFDSNDLLNG-RDIDKHLIKVDNIV 318 (323)
T ss_pred hhc-ccccCCHHHHHhhcccccccch-HHHHhcccchHHHH
Confidence 664 47 688888888876666653 34555555555554
No 388
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=99.17 E-value=2.4e-10 Score=113.71 Aligned_cols=133 Identities=14% Similarity=0.052 Sum_probs=99.6
Q ss_pred HHHHHHhccccc--c--cccceeeeecCCCCCCchhccceeeeeecCCEEEEEEeeeec---CCCeeecceeEeeeehh-
Q 006782 263 DEIKAVMSKEHT--E--TTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVT---DSPFIISPRITFEVSVR- 334 (631)
Q Consensus 263 ~~Ik~vL~~~~~--~--~~~~f~DIYl~pP~~d~~~tde~LRvR~~dg~~~LtykG~~~---d~p~isrp~~ef~V~v~- 334 (631)
..+...|...+. . ....+.|+||..|++++...+.|||+|.. ..+|+++++.. +... ....++...+.
T Consensus 11 ~~~~~~L~~~~~~~~~~~~~~~~d~YfDtp~~~l~~~~~~LRiR~~--~~~lk~~~~~~~~~~~~~--~~~~E~~~~~~~ 86 (196)
T cd07758 11 PSAEERLRKLGALLELLGRRTFHDTYYDTPDNTLSLNDVWLRQRNG--QWELKIPPGGDPPTAGAN--TRYEELTGEAAI 86 (196)
T ss_pred HHHHHHHHhccCccCCCceEEEeeEEEeCCChhHHhCCcEEEEECC--eEEEEecCCCCCCCCCCc--ceEEecccHHHH
Confidence 345555554433 2 33445599999999999999999999963 77888887664 2223 33333333321
Q ss_pred -----------------hHHHHhhcCCeEEEEEEeeeeEeecC-cEEEEeecccccCcceEEEEe------------ccH
Q 006782 335 -----------------LLGGLMALGYTIATILKRSSHIFYDD-RVCVKTDWLEQLNRKYVQVQG------------RDR 384 (631)
Q Consensus 335 -----------------il~GL~~LGy~~~a~v~k~re~y~~~-~~~i~lD~ve~Lg~~FveI~g------------~~~ 384 (631)
+...|..|||.+.+.+.|.|..|..+ +++|+||+++ +|..|+||+- .++
T Consensus 87 ~~~v~~~~~~~~~~~~~~~~~L~~lgf~~~~~~~k~R~~y~~~~g~~v~LD~~~-~G~~~~EiE~~v~~~~~~~~~~~a~ 165 (196)
T cd07758 87 AAALRKLLGGALPSAGGLGDELANLGLREFASFVTKRESWKLDGAFRVDLDRTD-FGYSVGEVELLVEEEDNEAEVPAAL 165 (196)
T ss_pred HHHHHHhcCCCCCcchhHHHHHhhCCCeEEEEEEEEEEEEEcCCCcEEEEeccc-CCcceEEEEEEEecccchhhHHHHH
Confidence 33678889999999999999999999 9999999999 7746999942 367
Q ss_pred HHHHHHHHHcCCCCCc
Q 006782 385 LYVKYVGEQLGLDGSY 400 (631)
Q Consensus 385 ~~v~~~~~~Lgl~g~~ 400 (631)
+.+.+++++||+.+.|
T Consensus 166 ~~i~~~~~~lg~~~~~ 181 (196)
T cd07758 166 AKIDELISALMERYLW 181 (196)
T ss_pred HHHHHHHHHhCCCccc
Confidence 7899999999999843
No 389
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.17 E-value=4.1e-11 Score=150.06 Aligned_cols=122 Identities=20% Similarity=0.165 Sum_probs=99.1
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHHHHHH
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~ 128 (631)
..+|++++|.+++|+ +++|+||||||||||+++|+|.+ |..|.|.++| .++|++|+|.+++ .|+++|+.
T Consensus 651 ~~~l~~isl~i~~G~---~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------~i~yv~Q~~~l~~-~Ti~eNI~ 720 (1522)
T TIGR00957 651 PPTLNGITFSIPEGA---LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------SVAYVPQQAWIQN-DSLRENIL 720 (1522)
T ss_pred CceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------EEEEEcCCccccC-CcHHHHhh
Confidence 468999999999999 89999999999999999999999 8999999986 4799999998875 69999987
Q ss_pred Hhhccc---------------ccc-ccc-----cccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 129 GLKEGK---------------AVQ-VPI-----YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 129 ~L~~g~---------------~I~-~Pv-----yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
...... .+. .|. ........++|+++++..+++++-++.+++.||+++.+|..
T Consensus 721 ~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~ 794 (1522)
T TIGR00957 721 FGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 794 (1522)
T ss_pred cCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 432100 000 111 11122357789999999999999999999999999999973
No 390
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.16 E-value=3.8e-11 Score=149.01 Aligned_cols=155 Identities=14% Similarity=0.061 Sum_probs=113.4
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-----CCceEEEECCcccc------ccccccccCCCC
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-----PSIAVITMDNYNDS------SRIIDGNFDDPR 116 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-----p~~G~I~lDg~~~~------~~~i~~vfq~p~ 116 (631)
..+.+|+++|+.+++|+ +++|+||||||||||+++|++.. |..|.|.++|.... .+.+++++|++.
T Consensus 72 ~~~~iL~~vs~~i~~Ge---~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~ 148 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGE---LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV 148 (1394)
T ss_pred CcceeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccc
Confidence 34679999999999999 99999999999999999999985 47899999997432 234789999999
Q ss_pred CCchhhHHHHHHHhhc---------c---c----c-cc--cccc------c-----cccccccCceeeeecCccEEEEee
Q 006782 117 LTDYDTLLENIRGLKE---------G---K----A-VQ--VPIY------D-----FKSSSRIGYRTLEVPSSRIVIIEG 166 (631)
Q Consensus 117 l~d~~tl~e~L~~L~~---------g---~----~-I~--~Pvy------d-----~~~~~rs~~~~~~v~~a~VLIvEG 166 (631)
+++..|+.|+|..... + + . +. ...+ + ......++|+++++..+..++.++
T Consensus 149 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p 228 (1394)
T TIGR00956 149 HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228 (1394)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCC
Confidence 9999999999965311 0 0 0 00 0001 1 112346889999999999999999
Q ss_pred chhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHH
Q 006782 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIH 212 (631)
Q Consensus 167 i~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~ 212 (631)
.+++.||++..+|.. ....+.++.|++.+ .|.++--++|
T Consensus 229 ~vlllDEPTsgLD~~-------~~~~i~~~L~~la~~~g~tvii~~H 268 (1394)
T TIGR00956 229 KIQCWDNATRGLDSA-------TALEFIRALKTSANILDTTPLVAIY 268 (1394)
T ss_pred CEEEEeCCCCCcCHH-------HHHHHHHHHHHHHHhcCCEEEEEec
Confidence 999999999999984 22233344555543 3655433333
No 391
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.16 E-value=3.2e-11 Score=135.94 Aligned_cols=133 Identities=12% Similarity=0.115 Sum_probs=99.2
Q ss_pred ceeEeecCc-eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCC-
Q 006782 41 DTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL- 117 (631)
Q Consensus 41 ~~ls~~~g~-~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l- 117 (631)
+++++.++. ..+++++||.+.+|+ .|||+||||+|||||++.|++.+ |.+|.|.+... -.++|..|+...
T Consensus 325 ~~~~~~y~~~~~l~~~~s~~i~~g~---riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~----v~igyf~Q~~~~l 397 (530)
T COG0488 325 ENVSKGYDGGRLLLKDLSFRIDRGD---RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET----VKIGYFDQHRDEL 397 (530)
T ss_pred eccccccCCCceeecCceEEecCCC---EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc----eEEEEEEehhhhc
Confidence 444444433 689999999999999 69999999999999999999998 78898887643 256777777633
Q ss_pred CchhhHHHHHHHhhccc-cccc-----------cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 TDYDTLLENIRGLKEGK-AVQV-----------PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~g~-~I~~-----------Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.+..++.+.+....... ...+ ..........+||++.++..+.++.-.+.++++|||+++||+
T Consensus 398 ~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi 472 (530)
T COG0488 398 DPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDI 472 (530)
T ss_pred CccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCH
Confidence 34456777776544221 1110 111222356788999999999999999999999999999996
No 392
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.15 E-value=3.1e-11 Score=150.78 Aligned_cols=122 Identities=19% Similarity=0.165 Sum_probs=99.4
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHHHHHH
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~ 128 (631)
..+|++++|.+++|+ +++|+||||||||||+++|+|++ |..|.|.++| .++|++|+|.+++. |+++|+.
T Consensus 439 ~~~l~~i~l~i~~G~---~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------~iayv~Q~~~l~~~-Ti~eNI~ 508 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQ---LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------RISFSPQTSWIMPG-TIKDNII 508 (1490)
T ss_pred CcceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------EEEEEeCCCccCCc-cHHHHHH
Confidence 458999999999999 89999999999999999999999 8999999987 48999999999874 9999987
Q ss_pred Hhhccc-----c----------c-cccccc-----cccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 129 GLKEGK-----A----------V-QVPIYD-----FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 129 ~L~~g~-----~----------I-~~Pvyd-----~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
...... . + ..|.-+ ......++|+++++..+++++-++.+++.||++..+|..
T Consensus 509 ~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 509 FGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred hccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 432110 0 0 011111 112357789999999999999999999999999999973
No 393
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.14 E-value=1e-10 Score=116.13 Aligned_cols=162 Identities=19% Similarity=0.189 Sum_probs=101.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc----c----cc----cc-cccCCCC-CCchhhHHHHHH----
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----S----RI----ID-GNFDDPR-LTDYDTLLENIR---- 128 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~----~----~~----i~-~vfq~p~-l~d~~tl~e~L~---- 128 (631)
.+|||+|+.||||||+++.|...+ +...|+.|..... . .. ++ -+++... ..|...+.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~-g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~ 80 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK-GIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPE 80 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-CCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHH
Confidence 379999999999999999999875 4556766664211 0 00 11 1122223 334333333321
Q ss_pred HhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHH
Q 006782 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (631)
Q Consensus 129 ~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e 208 (631)
.+..-+.+.+|..-........ ......++++|.++++...+...||..|||++|.++++.|.+.|+ |.+.+
T Consensus 81 ~~~~l~~i~hP~i~~~~~~~~~----~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~----g~s~e 152 (195)
T PRK14730 81 ERRWLENLIHPYVRERFEEELA----QLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRD----GLTEE 152 (195)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH----hcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 1111233445532222111111 112346899999999988888899999999999999877766664 88999
Q ss_pred HHHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 209 ~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
++.+++... +| +++.+..||+||.|+.+.
T Consensus 153 ~~~~ri~~Q-~~-----~~~k~~~aD~vI~N~g~~ 181 (195)
T PRK14730 153 EAEARINAQ-WP-----LEEKVKLADVVLDNSGDL 181 (195)
T ss_pred HHHHHHHhC-CC-----HHHHHhhCCEEEECCCCH
Confidence 988887543 33 456678999999988654
No 394
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.14 E-value=1.1e-10 Score=115.53 Aligned_cols=162 Identities=22% Similarity=0.233 Sum_probs=101.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc----c----cc----ccc-ccCCCCCCchhhHHHHHH----
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----S----RI----IDG-NFDDPRLTDYDTLLENIR---- 128 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~----~----~~----i~~-vfq~p~l~d~~tl~e~L~---- 128 (631)
+.+|||+|+.||||||+++.|.. + +...|..|..... . .. .|- ++.....++...+.+.+.
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~ 79 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-L-GAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPE 79 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-c-CCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHH
Confidence 45899999999999999999998 4 5667888765211 0 00 110 222223344444444332
Q ss_pred HhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHH
Q 006782 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (631)
Q Consensus 129 ~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e 208 (631)
.+..-..+.+|........... ......++++|+++++...+...||..|+|++|.+++..|-..| +|.+.+
T Consensus 80 ~~~~L~~i~hP~v~~~~~~~~~----~~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R----~~~s~e 151 (194)
T PRK00081 80 ARKKLEAILHPLIREEILEQLQ----EAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMAR----DGLSEE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HcccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHc----CCCCHH
Confidence 1222234455543332222111 01123689999999999888899999999999998865544333 588988
Q ss_pred HHHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 209 ~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
++..++.. ..+. +.....||+||.|+.++
T Consensus 152 ~~~~ri~~-Q~~~-----~~~~~~ad~vI~N~g~~ 180 (194)
T PRK00081 152 EAEAIIAS-QMPR-----EEKLARADDVIDNNGDL 180 (194)
T ss_pred HHHHHHHH-hCCH-----HHHHHhCCEEEECCCCH
Confidence 88777753 2332 33457799999987644
No 395
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.13 E-value=1.9e-10 Score=129.05 Aligned_cols=186 Identities=18% Similarity=0.172 Sum_probs=117.3
Q ss_pred ecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc----cccccccCCCCCCchh
Q 006782 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS----RIIDGNFDDPRLTDYD 121 (631)
Q Consensus 46 ~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~----~~i~~vfq~p~l~d~~ 121 (631)
..|....++|+.+.. ++ .+|+|.||+||||||+++.|+..+ +...+..|.++..- ...++.++++..+ .
T Consensus 268 ~~g~~RLIDN~~~~~-~~---~ii~i~G~sgsGKst~a~~la~~l-~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l--~ 340 (512)
T PRK13477 268 RCGSTRLIDNVFLMK-RQ---PIIAIDGPAGAGKSTVTRAVAKKL-GLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL--A 340 (512)
T ss_pred EeCCeEEEeeeEecc-CC---cEEEEECCCCCCHHHHHHHHHHHc-CCeEecCCceehHHHHHHHHcCcCCcCHHHH--H
Confidence 446677899998866 44 499999999999999999999988 33344444444321 1122333332211 1
Q ss_pred hHHHHHHHhh-----ccccccccccccccccccCc--------------------eeeeecCccEEEEeechhccccccC
Q 006782 122 TLLENIRGLK-----EGKAVQVPIYDFKSSSRIGY--------------------RTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 122 tl~e~L~~L~-----~g~~I~~Pvyd~~~~~rs~~--------------------~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
.+.+++.... .+..+..+.+|...+-++.. ..+.+....-+|+||--+. .-+.+
T Consensus 341 ~l~~~l~~~~~~~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDig-tvV~P 419 (512)
T PRK13477 341 ELLSDLKIELKPSSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIG-THVFP 419 (512)
T ss_pred HHHhcCCeeeccCCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccce-eEEcC
Confidence 1222222221 12346666666654332211 0011222334888987654 34556
Q ss_pred CCcEEEEEEcChhhHHHHHHHHHHHHhCC---CHHHHHHHHHhccccchhhcccCCCCC-CeEEEeCC
Q 006782 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQ---EPEEIIHQISETVYPMYKAFIEPDLQT-AHIKIINK 240 (631)
Q Consensus 177 ~lDlkIfVdad~d~rLiRRI~RDv~erG~---s~e~Vi~q~~~~v~P~~~~fIeP~k~~-ADiII~N~ 240 (631)
..|+|||++++.+.+..||..+. ..||. +.+.+.+.+.++..-+..+.+.|.... ++++|+++
T Consensus 420 ~AdlKIfL~As~evRa~RR~~~l-~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs 486 (512)
T PRK13477 420 DAELKIFLTASVEERARRRALDL-QAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITD 486 (512)
T ss_pred CCCEEEEEECCHHHHHHHHHhhh-hhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECC
Confidence 68999999999999888776553 35564 478899999998888889999998887 45666544
No 396
>PLN03140 ABC transporter G family member; Provisional
Probab=99.13 E-value=1.4e-11 Score=153.00 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=112.3
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C--CceEEEECCcccc----ccccccccCCCCCCch
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p--~~G~I~lDg~~~~----~~~i~~vfq~p~l~d~ 120 (631)
+...+|++||+.+++|+ +++|+||||||||||+++|+|.. + ..|.|.++|.... .+.++|++|++.+++.
T Consensus 891 ~~~~iL~~vs~~i~~Ge---l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~ 967 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGV---LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQ 967 (1470)
T ss_pred CCceEeeCcEEEEECCe---EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCC
Confidence 34579999999999999 99999999999999999999987 2 4799999997543 2457999999999999
Q ss_pred hhHHHHHHHhhc---cccc----------------cc-ccccccc-----ccccCceeeeecCccEEEEeechhcccccc
Q 006782 121 DTLLENIRGLKE---GKAV----------------QV-PIYDFKS-----SSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (631)
Q Consensus 121 ~tl~e~L~~L~~---g~~I----------------~~-Pvyd~~~-----~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~ 175 (631)
.|+.|+|..... ...+ .. +..+... ...++|+++++..+..++.++.+++.|||+
T Consensus 968 lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 968 VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred CcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 999999975321 0000 01 1112221 356778999999999999999999999999
Q ss_pred CCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 176 ~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
..+|.. ....+.++.|.+.+.|+++
T Consensus 1048 sgLD~~-------~a~~v~~~L~~l~~~g~tV 1072 (1470)
T PLN03140 1048 SGLDAR-------AAAIVMRTVRNTVDTGRTV 1072 (1470)
T ss_pred CCCCHH-------HHHHHHHHHHHHHHCCCEE
Confidence 999973 2333445555555556554
No 397
>PLN03130 ABC transporter C family member; Provisional
Probab=99.13 E-value=6.4e-11 Score=148.71 Aligned_cols=121 Identities=17% Similarity=0.105 Sum_probs=98.0
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCc-eEEEECCccccccccccccCCCCCCchhhHHHHH
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI-AVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENI 127 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~-G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L 127 (631)
..+|+++||.+++|+ .++|+||+|||||||+++|.|.+ |.. |.|.+. ..++|++|+|.+|+ .|+++||
T Consensus 630 ~~vL~~inl~i~~Ge---~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~------~~Iayv~Q~p~Lfn-gTIreNI 699 (1622)
T PLN03130 630 RPTLSNINLDVPVGS---LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR------GTVAYVPQVSWIFN-ATVRDNI 699 (1622)
T ss_pred CceeeceeEEecCCC---EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc------CeEEEEcCccccCC-CCHHHHH
Confidence 568999999999999 89999999999999999999999 778 888753 36899999999997 5999999
Q ss_pred HHhhccc---------------cc-cccc-ccccc----ccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 128 RGLKEGK---------------AV-QVPI-YDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 128 ~~L~~g~---------------~I-~~Pv-yd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
....... .+ ..|. ++-.. ...+||+++++..+|++.-++.+++.||+++.+|.
T Consensus 700 ~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~ 773 (1622)
T PLN03130 700 LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773 (1622)
T ss_pred hCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCH
Confidence 7532210 01 1121 12122 24678999999999999999999999999999997
No 398
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.13 E-value=1.6e-11 Score=149.08 Aligned_cols=192 Identities=17% Similarity=0.224 Sum_probs=134.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------ccccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vf 112 (631)
-++.+..+...||++|+|.+++|+| |||+|.+|||||||+.+|-.+. |..|.|.+||.+... .+++.+|
T Consensus 1144 ~~~RYrp~lp~VLk~is~~I~p~eK---VGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIP 1220 (1381)
T KOG0054|consen 1144 LSLRYRPNLPLVLKGISFTIKPGEK---VGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIP 1220 (1381)
T ss_pred eEEEeCCCCcchhcCceEEEcCCce---EEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeC
Confidence 3455566777899999999999994 9999999999999999999998 899999999986543 5688999
Q ss_pred CCCCCCchhhHHHHHHHhhc---------------cccc-cccc-ccccc----ccccCceeeeecCccEEEEeechhcc
Q 006782 113 DDPRLTDYDTLLENIRGLKE---------------GKAV-QVPI-YDFKS----SSRIGYRTLEVPSSRIVIIEGIYALS 171 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~---------------g~~I-~~Pv-yd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL~ 171 (631)
|+|.+|.. |++.||....+ +..+ ..|. .|... ...+-|+++-+..+|+++-...+++.
T Consensus 1221 QdPvLFsG-TvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvL 1299 (1381)
T KOG0054|consen 1221 QDPVLFSG-TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVL 1299 (1381)
T ss_pred CCCceecC-ccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEE
Confidence 99988753 55555542221 1111 1121 22222 12344677888889999999999999
Q ss_pred ccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCce
Q 006782 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPT 251 (631)
Q Consensus 172 dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v 251 (631)
||.+...|.. || .++.+..|.. ..+.|+--|-|+. +-|+ -+++|
T Consensus 1300 DEATAsVD~~----TD---~lIQ~tIR~~-F~dcTVltIAHRl-------------------~TVm---------d~DrV 1343 (1381)
T KOG0054|consen 1300 DEATASVDPE----TD---ALIQKTIREE-FKDCTVLTIAHRL-------------------NTVM---------DSDRV 1343 (1381)
T ss_pred ecccccCChH----HH---HHHHHHHHHH-hcCCeEEEEeecc-------------------chhh---------hcCeE
Confidence 9999999972 33 3444444432 1233433333443 2222 25778
Q ss_pred eeeccCCcccHHHHHHHhccc
Q 006782 252 YILKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 252 ~iLKs~~~v~~~~Ik~vL~~~ 272 (631)
.||+.|+.++.|.=...|.+.
T Consensus 1344 lVld~G~v~EfdsP~~Ll~~~ 1364 (1381)
T KOG0054|consen 1344 LVLDAGRVVEFDSPAELLSDK 1364 (1381)
T ss_pred EEeeCCeEeecCChHHHHhCC
Confidence 899999999988888888664
No 399
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.12 E-value=6.6e-11 Score=116.28 Aligned_cols=160 Identities=21% Similarity=0.254 Sum_probs=97.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccc----cc--------cccc-cccCCCCCCchhhHHHHHH----H
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SS--------RIID-GNFDDPRLTDYDTLLENIR----G 129 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~----~~--------~~i~-~vfq~p~l~d~~tl~e~L~----~ 129 (631)
.+|||+|+.||||||+++.+... +..+|..|.... .. ..+| -+++.....|...+.+.+. .
T Consensus 1 ~iIglTG~igsGKStv~~~l~~~--G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~ 78 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAEL--GFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEK 78 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT--T-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHHC--CCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHH
Confidence 47999999999999999999984 677787776421 00 0111 1222233445444444432 1
Q ss_pred hhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHH
Q 006782 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (631)
Q Consensus 130 L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~ 209 (631)
++.-+.+.+|........... .....+++++|.++++...+...||..|+|++|.++++.|-+.|+ |.+.++
T Consensus 79 ~~~L~~iihP~I~~~~~~~~~----~~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~----~~~~~~ 150 (180)
T PF01121_consen 79 LKKLENIIHPLIREEIEKFIK----RNKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERD----GLSEEE 150 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HCHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHH----TSTHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH----hccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhC----CCcHHH
Confidence 222344556654333222211 122237999999999988889999999999999988766655554 999999
Q ss_pred HHHHHHhccccchhhcccCCCCCCeEEEeCCCC
Q 006782 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (631)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~ 242 (631)
+..++. ..+|..+ .++.||+||.|+++
T Consensus 151 ~~~ri~-~Q~~~~~-----k~~~ad~vI~N~g~ 177 (180)
T PF01121_consen 151 AEARIA-SQMPDEE-----KRKRADFVIDNNGS 177 (180)
T ss_dssp HHHHHH-TS--HHH-----HHHH-SEEEE-SSH
T ss_pred HHHHHH-hCCCHHH-----HHHhCCEEEECCCC
Confidence 888874 3344433 35789999999864
No 400
>PLN03232 ABC transporter C family member; Provisional
Probab=99.11 E-value=8.1e-11 Score=147.22 Aligned_cols=123 Identities=15% Similarity=0.055 Sum_probs=95.9
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHHHHHH
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~ 128 (631)
..+|+++||.+++|+ .++|+|++|||||||+++|.|.+ |..|.+. .....++|++|+|.+|+ .|+++||.
T Consensus 630 ~~vL~~inl~i~~Ge---~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----~~~~~Iayv~Q~p~Lf~-gTIreNI~ 700 (1495)
T PLN03232 630 KPTLSDINLEIPVGS---LVAIVGGTGEGKTSLISAMLGELSHAETSSV-----VIRGSVAYVPQVSWIFN-ATVRENIL 700 (1495)
T ss_pred CceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----EecCcEEEEcCcccccc-ccHHHHhh
Confidence 568999999999999 89999999999999999999999 6665432 12346899999999997 59999997
Q ss_pred Hhhccc---------------cc-cccc-cccccc----cccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 129 GLKEGK---------------AV-QVPI-YDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 129 ~L~~g~---------------~I-~~Pv-yd~~~~----~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
....-. .+ ..|. ++-..+ ..+||+++++..+|+++-++.+++.||+++.+|..
T Consensus 701 fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~ 774 (1495)
T PLN03232 701 FGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAH 774 (1495)
T ss_pred cCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 532110 01 1121 122222 46789999999999999999999999999999973
No 401
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.09 E-value=3.6e-11 Score=138.14 Aligned_cols=155 Identities=18% Similarity=0.142 Sum_probs=115.8
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC----CceEEEECCccccc----cccccccCCCCCCch
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSS----RIIDGNFDDPRLTDY 120 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp----~~G~I~lDg~~~~~----~~i~~vfq~p~l~d~ 120 (631)
.+.+|++|+..+++|+ +.||.||||||||||+++|++..+ ..|.|.++|..... +..+|+.|+..+++.
T Consensus 42 ~k~iL~~vsg~~~~Ge---l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~ 118 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGE---LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPT 118 (613)
T ss_pred cceeeeCcEEEEecCe---EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccc
Confidence 5789999999999999 999999999999999999999983 57999999954332 457899999999999
Q ss_pred hhHHHHHHHhhc---ccc---------cc-----cc---cccccc-----ccccCceeeeecCccEEEEeechhcccccc
Q 006782 121 DTLLENIRGLKE---GKA---------VQ-----VP---IYDFKS-----SSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (631)
Q Consensus 121 ~tl~e~L~~L~~---g~~---------I~-----~P---vyd~~~-----~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~ 175 (631)
+||+|.|..... ... |+ .. .-|-.. ...++|++.|+..+-=++.+|.+++.|||+
T Consensus 119 LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPT 198 (613)
T KOG0061|consen 119 LTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPT 198 (613)
T ss_pred ccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCC
Confidence 999999964221 110 00 00 011111 235668888998888899999999999999
Q ss_pred CCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHH
Q 006782 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (631)
Q Consensus 176 ~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q 213 (631)
..+|-. .-..+-++.|++++.|+++--.+||
T Consensus 199 SGLDS~-------sA~~vv~~Lk~lA~~grtVi~tIHQ 229 (613)
T KOG0061|consen 199 SGLDSF-------SALQVVQLLKRLARSGRTVICTIHQ 229 (613)
T ss_pred CCcchh-------hHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 999974 1123445556666668876544454
No 402
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.08 E-value=2.4e-10 Score=114.52 Aligned_cols=161 Identities=11% Similarity=0.102 Sum_probs=100.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc----c---cc----ccc-ccCCCCCCchhhHHHHHHH----
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----S---RI----IDG-NFDDPRLTDYDTLLENIRG---- 129 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~----~---~~----i~~-vfq~p~l~d~~tl~e~L~~---- 129 (631)
|++|||+|+.||||||+++.+...+ +...+..|..... . .. .|- +++ ..-+|...+.+.+..
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~l-g~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKL-NLNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESKEA 83 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHc-CCeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCHHH
Confidence 6789999999999999999999765 3446666654211 0 00 110 111 123444444444321
Q ss_pred hhccccccccccccccccccCceeeeecCccEEEEeechhccccc--cCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL--RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 130 L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl--~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
+..-+.+.+|........... .....++++|.++++.... ...||..|+|++|.++++.|-+.| +|.+.
T Consensus 84 ~~~Le~i~HP~V~~~~~~~~~-----~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~R----d~~s~ 154 (204)
T PRK14733 84 KKWLEDYLHPVINKEIKKQVK-----ESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMER----DGKNR 154 (204)
T ss_pred HHHHHhhhhHHHHHHHHHHHH-----hcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHc----CCCCH
Confidence 222234556654333222111 1123589999999987543 468999999999988865554444 58999
Q ss_pred HHHHHHHHhccccchhhcccCCCCCCeEEEeCCC-CC
Q 006782 208 EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF-NP 243 (631)
Q Consensus 208 e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~-~p 243 (631)
+++..++... .|. +..++.||+||.|++ +.
T Consensus 155 ~~a~~ri~~Q-~~~-----eek~~~aD~VI~N~g~~~ 185 (204)
T PRK14733 155 QQAVAFINLQ-ISD-----KEREKIADFVIDNTELTD 185 (204)
T ss_pred HHHHHHHHhC-CCH-----HHHHHhCCEEEECcCCCH
Confidence 9988887433 333 345689999999887 44
No 403
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.08 E-value=2.4e-10 Score=113.83 Aligned_cols=163 Identities=15% Similarity=0.178 Sum_probs=100.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcc----cc-c-------cccccccC-CCCCCchhhHHHHHH----H
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DS-S-------RIIDGNFD-DPRLTDYDTLLENIR----G 129 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~----~~-~-------~~i~~vfq-~p~l~d~~tl~e~L~----~ 129 (631)
.+|||+|++||||||+++.|+.. +.-.|..|... .. . ..+|..+. .....|...+.+.+. .
T Consensus 2 ~~igitG~igsGKst~~~~l~~~--g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~ 79 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSSE--GFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQ 79 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHHC--CCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHH
Confidence 58999999999999999999873 44456555421 11 0 11222222 223344444433332 1
Q ss_pred hhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHH
Q 006782 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (631)
Q Consensus 130 L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~ 209 (631)
+..-+.+.+|........... ...-....++++|..+++...+...+|.+|||++|.++++.|-+. ++|.+.++
T Consensus 80 ~~~le~i~hP~v~~~~~~~~~--~~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~----R~g~s~e~ 153 (200)
T PRK14734 80 TALLNAITHPRIAEETARRFN--EARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVE----KRGLDEDD 153 (200)
T ss_pred HHHHHHhhCHHHHHHHHHHHH--HHHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHH----cCCCCHHH
Confidence 222234555643222111110 000123468999999999888888999999999999886544333 35999999
Q ss_pred HHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
+.+++...+.+.+ .+..||+||.|+.++
T Consensus 154 ~~~ri~~Q~~~~~------k~~~ad~vI~N~g~~ 181 (200)
T PRK14734 154 ARRRIAAQIPDDV------RLKAADIVVDNNGTR 181 (200)
T ss_pred HHHHHHhcCCHHH------HHHhCCEEEECcCCH
Confidence 9998865544432 247899999988755
No 404
>PLN03073 ABC transporter F family; Provisional
Probab=99.07 E-value=6.7e-11 Score=138.10 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=88.7
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh----CCCceEEEECCcc-----cc-------
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF----MPSIAVITMDNYN-----DS------- 104 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l----lp~~G~I~lDg~~-----~~------- 104 (631)
+++++.++...+|+++||.+.+|+ .+||+|+||||||||+++|++. .|..|.|...+.. ..
T Consensus 181 ~nls~~y~~~~ll~~isl~i~~Ge---~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~ 257 (718)
T PLN03073 181 ENFSISVGGRDLIVDASVTLAFGR---HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLN 257 (718)
T ss_pred ceEEEEeCCCEEEECCEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHH
Confidence 455566666779999999999999 7999999999999999999985 3566777532221 00
Q ss_pred ---------ccccccccCCCCCC----------------chhhHHHHHHHhhc-------------------cccccccc
Q 006782 105 ---------SRIIDGNFDDPRLT----------------DYDTLLENIRGLKE-------------------GKAVQVPI 140 (631)
Q Consensus 105 ---------~~~i~~vfq~p~l~----------------d~~tl~e~L~~L~~-------------------g~~I~~Pv 140 (631)
...+++++|.+.+. +...+.+.+..+.. +-.+....
T Consensus 258 ~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~ 337 (718)
T PLN03073 258 TDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEM 337 (718)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHH
Confidence 01133444432210 11111111111110 00010011
Q ss_pred cccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 141 yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.+......++|+.+++..+++++.++.+++.|||++.+|.
T Consensus 338 ~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~ 377 (718)
T PLN03073 338 QVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377 (718)
T ss_pred HhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 2334467888999999999999999999999999999998
No 405
>PTZ00243 ABC transporter; Provisional
Probab=99.07 E-value=8.9e-11 Score=147.11 Aligned_cols=124 Identities=19% Similarity=0.165 Sum_probs=99.1
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHHHH
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~ 126 (631)
+...+|++++|.+++|+ +++|+||||||||||+++|+|.+ |..|.|.+. ..++|++|+|.+++ .++.+|
T Consensus 671 ~~~~iL~~isl~i~~G~---~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------~~i~yv~Q~~~l~~-~Tv~en 740 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGK---LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------RSIAYVPQQAWIMN-ATVRGN 740 (1560)
T ss_pred CCceeEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------CeEEEEeCCCccCC-CcHHHH
Confidence 44568999999999999 89999999999999999999998 889999864 36899999998875 589999
Q ss_pred HHHhhccc-----c-cc----------cc-----ccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 127 IRGLKEGK-----A-VQ----------VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 127 L~~L~~g~-----~-I~----------~P-----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
+....... . +. .| ..+......++|+++++..+++++-++.+++.|||+..+|..
T Consensus 741 I~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~ 816 (1560)
T PTZ00243 741 ILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816 (1560)
T ss_pred HHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 86532110 0 00 01 112223457789999999999999999999999999999973
No 406
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.07 E-value=1.3e-10 Score=138.66 Aligned_cols=157 Identities=14% Similarity=0.081 Sum_probs=123.9
Q ss_pred ccceeEeecCcee-EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------cccc
Q 006782 39 IEDTLSFEKGFFI-VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRII 108 (631)
Q Consensus 39 v~~~ls~~~g~~~-vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i 108 (631)
+...++..++.+. +++++++.+++|+ +.|+.|+|||||||++++|.|.. |+.|.+.+.|+... .+.+
T Consensus 566 ~~~~L~k~y~~~~~Av~~ls~~V~~ge---cfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 566 VLNNLSKVYGGKDGAVRGLSFAVPPGE---CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred EEcceeeeecchhhhhcceEEEecCCc---eEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 3455555566555 9999999999999 89999999999999999999999 89999999887543 2458
Q ss_pred ccccCCCCCCchhhHHHHHHHhhc--c---cccc------------ccccccccccccCceeeeecCccEEEEeechhcc
Q 006782 109 DGNFDDPRLTDYDTLLENIRGLKE--G---KAVQ------------VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (631)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~--g---~~I~------------~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~ 171 (631)
||.+|+..+++.+|.+|++..... | .++. .+..+...+..++|.+.++.-+-.++-.+.+++.
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~L 722 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILL 722 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEe
Confidence 999999999999999999976543 2 1111 1223333566778888888888888999999999
Q ss_pred ccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCC
Q 006782 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (631)
Q Consensus 172 dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~ 205 (631)
|||...+|++ ..|.+|.+.+++++.|+
T Consensus 723 DEPstGmDP~-------arr~lW~ii~~~~k~g~ 749 (885)
T KOG0059|consen 723 DEPSTGLDPK-------ARRHLWDIIARLRKNGK 749 (885)
T ss_pred cCCCCCCCHH-------HHHHHHHHHHHHHhcCC
Confidence 9999999983 66777888887776664
No 407
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.06 E-value=2e-10 Score=114.96 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=95.9
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccc----c-----c---ccccc-cc--CCCC--CCchhhHHHH
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----S-----S---RIIDG-NF--DDPR--LTDYDTLLEN 126 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~----~-----~---~~i~~-vf--q~p~--l~d~~tl~e~ 126 (631)
..+++|||+|++||||||+++.|.+. +..+++.|.... . . ..++. ++ +... .++...+.+.
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~~--g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~ 80 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAEM--GCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQV 80 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHC--CCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHH
Confidence 34679999999999999999999985 445565553210 0 0 00111 11 1111 1333332222
Q ss_pred H----HHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH
Q 006782 127 I----RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (631)
Q Consensus 127 L----~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e 202 (631)
+ ..+..-+.+.+|........... ........++++|+++++...+...||..|+|++|.+++..|-+.|
T Consensus 81 vf~~~~~~~~l~~i~hp~i~~~~~~~i~--~~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R---- 154 (208)
T PRK14731 81 VFSDPEKLGALNRLIHPKVFAAFQRAVD--RAARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQR---- 154 (208)
T ss_pred HhCCHHHHHHHHHHHCHHHHHHHHHHHH--HHHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHc----
Confidence 2 11222233445532222111111 0011234689999998887777888999999999998876665555
Q ss_pred hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 203 VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 203 rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
.+.+.+++..++.. .++..+. .+.||++|.|++++
T Consensus 155 ~~~s~e~~~~Ri~~-q~~~~~~-----~~~ad~vI~N~g~~ 189 (208)
T PRK14731 155 GMGSREEIRRRIAA-QWPQEKL-----IERADYVIYNNGTL 189 (208)
T ss_pred CCCCHHHHHHHHHH-cCChHHH-----HHhCCEEEECCCCH
Confidence 35688888877744 3343222 24699999988654
No 408
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.05 E-value=2.8e-10 Score=124.46 Aligned_cols=259 Identities=15% Similarity=0.155 Sum_probs=137.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc----c----cc----cc-cccCCCCCCchhhHHHHHHH----
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----S----RI----ID-GNFDDPRLTDYDTLLENIRG---- 129 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~----~----~~----i~-~vfq~p~l~d~~tl~e~L~~---- 129 (631)
.+|||+|+.||||||+++.|+.+ +...|+.|..... . .. .| -+.+....+|...+.+.+..
T Consensus 2 ~~IgltG~igsGKStv~~~L~~~--G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~ 79 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAEL--GAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEA 79 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHHC--CCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 47999999999999999999984 5567777754211 0 01 11 12222334554444444321
Q ss_pred hhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHH
Q 006782 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (631)
Q Consensus 130 L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~ 209 (631)
+..-+.+.+|..-........ ......+++++..+++...+...||..|||++|.+.++.| ...++|.+.++
T Consensus 80 ~~~le~i~hP~I~~~i~~~i~----~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~R----l~~rRg~s~~~ 151 (395)
T PRK03333 80 RAVLNGIVHPLVGARRAELIA----AAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRR----LVEQRGMAEAD 151 (395)
T ss_pred HHHHHHhhhHHHHHHHHHHHH----hcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHH----HHhcCCCCHHH
Confidence 222233445532211111110 1122345666666666677888999999999998886533 33357999999
Q ss_pred HHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCcccHHHHHHHhcccccccccceeeeecCCCC
Q 006782 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPG 289 (631)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~~~f~DIYl~pP~ 289 (631)
+..++.... ..++.+..||++|.|+.++..- ...+ ..+......-++.+...-.+.....|-+.|..
T Consensus 152 a~~ri~~Q~------~~e~k~~~AD~vIdN~~s~e~l-~~~v------~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~yd 218 (395)
T PRK03333 152 ARARIAAQA------SDEQRRAVADVWLDNSGTPDEL-VEAV------RALWADRLLPFAHNLRARRRAARAPPRLVPAD 218 (395)
T ss_pred HHHHHHhcC------ChHHHHHhCCEEEECCCCHHHH-HHHH------HHHHHHHHhhHHHHHhcCCCCCCCCceEeCCC
Confidence 888775442 2344578899999988754210 0000 00111112222222222222222223333322
Q ss_pred CC----chhccceeeeeecCCEEEEEEeeeecCCCeeecceeEeeeehhhH-------HHHhhcCCeEEE
Q 006782 290 ED----PDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLL-------GGLMALGYTIAT 348 (631)
Q Consensus 290 ~d----~~~tde~LRvR~~dg~~~LtykG~~~d~p~isrp~~ef~V~v~il-------~GL~~LGy~~~a 348 (631)
+. |+....-|+---.+..+.+-=-|...-.....+|.+++.|.|..+ ..|+++||....
T Consensus 219 p~W~~~f~~e~~~l~~~l~~~~~~IeHIGSTsVpGl~AKPiIDI~v~V~~~~~~~~~~~~l~~~Gy~~~~ 288 (395)
T PRK03333 219 PSWPAQAQRIVARLKTAAGHKALRVDHIGSTAVPGLDAKDVIDIQVTVESLAVADELAEPLAAAGFPRLP 288 (395)
T ss_pred CCcHHHHHHHHHHHHHhcCccceEEEEeccCCCCCCccCCeeeEEEeeCChHHHHHHHHHHHHCCCcccc
Confidence 22 332222211111122334444555555556889999999986544 467999998653
No 409
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.04 E-value=1.8e-10 Score=117.12 Aligned_cols=137 Identities=15% Similarity=0.065 Sum_probs=90.7
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~v 111 (631)
++++..++.+.+|++|++.+++|+ -.+|+||||||||||++.+++.. |..|.+.+-|.... ++.+|++
T Consensus 35 ~~v~v~r~gk~iL~~isW~V~~ge---~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~v 111 (257)
T COG1119 35 KNVSVRRNGKKILGDLSWQVNPGE---HWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV 111 (257)
T ss_pred cceEEEECCEeeccccceeecCCC---cEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCcc
Confidence 566688899999999999999999 59999999999999999999999 77888877765221 1233332
Q ss_pred c----------------------CCCCCCc--hh-hHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEee
Q 006782 112 F----------------------DDPRLTD--YD-TLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (631)
Q Consensus 112 f----------------------q~p~l~d--~~-tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEG 166 (631)
- .....+. .. .-.+....+.+.-... ..-+..-+..+.|+.+++-.++.++..+
T Consensus 112 S~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~-~la~r~~~~LS~Ge~rrvLiaRALv~~P 190 (257)
T COG1119 112 SSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK-HLADRPFGSLSQGEQRRVLIARALVKDP 190 (257)
T ss_pred CHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchh-hhccCchhhcCHhHHHHHHHHHHHhcCC
Confidence 1 1111111 00 0001111111100000 0122223455667788889999999999
Q ss_pred chhccccccCCCcEE
Q 006782 167 IYALSEKLRPLIDLR 181 (631)
Q Consensus 167 i~lL~dEl~~~lDlk 181 (631)
.++++||++..+|+.
T Consensus 191 ~LLiLDEP~~GLDl~ 205 (257)
T COG1119 191 ELLILDEPAQGLDLI 205 (257)
T ss_pred CEEEecCccccCChH
Confidence 999999999999984
No 410
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.03 E-value=1.8e-10 Score=113.74 Aligned_cols=167 Identities=20% Similarity=0.318 Sum_probs=113.3
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccc--c----ccCCCCCCchhhHHHHHHHhhcccc-c-
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIID--G----NFDDPRLTDYDTLLENIRGLKEGKA-V- 136 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~--~----vfq~p~l~d~~tl~e~L~~L~~g~~-I- 136 (631)
+.+||||.|.+-||||||++.|...+|++-.|+.|+|+.+...+. . +|+-+...+...+.+.++....+.. .
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 457999999999999999999999999888999999987653322 1 3444455666666666665444321 1
Q ss_pred -------cccccccccccccCceeeeecCccEEEEeechhcc-ccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHH
Q 006782 137 -------QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (631)
Q Consensus 137 -------~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~-dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e 208 (631)
....+++...+. ........++++||.+++. +.+...+|.+|++.+|.+++..||-.| .|+-+.
T Consensus 83 ~ar~~~v~~~~~~~~~~~~----q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~R----t~y~p~ 154 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQF----QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREAR----TYYPPD 154 (225)
T ss_pred hHhhhhhhhhHHHHHhhhc----CcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhccc----ccCCCC
Confidence 111122221111 2334667899999999986 778899999999999988876665433 244333
Q ss_pred HHHHHHHhccccchhhcccCCCCCC--eEEEeCC
Q 006782 209 EIIHQISETVYPMYKAFIEPDLQTA--HIKIINK 240 (631)
Q Consensus 209 ~Vi~q~~~~v~P~~~~fIeP~k~~A--DiII~N~ 240 (631)
+ .-.+.-.+||+|.++.+.....+ |....|+
T Consensus 155 ~-tgyfd~~~~P~Y~~~~~~~~d~~~h~~~flng 187 (225)
T KOG3308|consen 155 D-TGYFDPVVWPHYEKNFEEARDRSRHDSLFLNG 187 (225)
T ss_pred C-CccccCccchHHHHHHHHHHhhcccceeeecc
Confidence 3 23444558999998887665554 6666654
No 411
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.00 E-value=1.2e-09 Score=101.08 Aligned_cols=143 Identities=15% Similarity=0.196 Sum_probs=90.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccccccCCCCCCchhhHHHHHHHhhcccccccccccccccc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~ 147 (631)
+|.|+|++||||||+++.|+..+ +...+..|+....... ......+ ....+.+.+.... .
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~-~~~~~~~~~i~~e~~~-~~~~~~~---~~~~i~~~l~~~~--------------~- 60 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-GLPYLDTGGIRTEEVG-KLASEVA---AIPEVRKALDERQ--------------R- 60 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCceeccccCCHHHHH-HHHHHhc---ccHhHHHHHHHHH--------------H-
Confidence 58999999999999999999987 3334555422110000 0000000 0001111111100 0
Q ss_pred ccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcc
Q 006782 148 RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFI 226 (631)
Q Consensus 148 rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fI 226 (631)
.+.....+|+||.++-. .+.+.+|+.||+++|.+++..|.+.|+... +|.+.+++.+++.....+.+.+|+
T Consensus 61 -------~~~~~~~~Vidg~~~~~-~~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 132 (147)
T cd02020 61 -------ELAKKPGIVLEGRDIGT-VVFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYV 132 (147)
T ss_pred -------HHhhCCCEEEEeeeeee-EEcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence 01112347888887532 234678999999999999888888877442 378999999999999999999999
Q ss_pred cCCCCCC-eEEEe
Q 006782 227 EPDLQTA-HIKII 238 (631)
Q Consensus 227 eP~k~~A-DiII~ 238 (631)
.|+...+ |++|+
T Consensus 133 ~~~~~~~~dl~i~ 145 (147)
T cd02020 133 APLKLAEDAIVID 145 (147)
T ss_pred ccccCCCCcEEEe
Confidence 9987444 46664
No 412
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.98 E-value=1.6e-09 Score=111.42 Aligned_cols=167 Identities=20% Similarity=0.169 Sum_probs=100.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccc----cc----cc----cc-cccCCCCCCchhhHHHHHH----
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SS----RI----ID-GNFDDPRLTDYDTLLENIR---- 128 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~----~~----~~----i~-~vfq~p~l~d~~tl~e~L~---- 128 (631)
+++|||+|+.||||||+++.|...+ +.-+|..|.... .. .. .+ .+......+|...+.+.+.
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~-G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~ 79 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEH-HIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQ 79 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc-CCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHH
Confidence 3689999999999999999999754 445666665311 00 01 11 1111123344444444332
Q ss_pred HhhccccccccccccccccccC-------ceeeeecCccEEEEeechhccccc-cCCCcEEEEEEcChhhHHHHHHHHHH
Q 006782 129 GLKEGKAVQVPIYDFKSSSRIG-------YRTLEVPSSRIVIIEGIYALSEKL-RPLIDLRVSVTGGVHFDLVKRVFRDI 200 (631)
Q Consensus 129 ~L~~g~~I~~Pvyd~~~~~rs~-------~~~~~v~~a~VLIvEGi~lL~dEl-~~~lDlkIfVdad~d~rLiRRI~RDv 200 (631)
.++.-+.+.+|........... ....+.....++++|.++++.... ...||..|+|++|.++++.|-+.|
T Consensus 80 ~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R-- 157 (244)
T PTZ00451 80 ARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKR-- 157 (244)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHc--
Confidence 1222234555543222111110 000011223589999999998764 457899999999988866554333
Q ss_pred HHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCC--CCC
Q 006782 201 QRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK--FNP 243 (631)
Q Consensus 201 ~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~--~~p 243 (631)
+|.+.+++.+++... .|. +..+..||+||.|+ +++
T Consensus 158 --~g~s~eea~~Ri~~Q-~~~-----~ek~~~aD~VI~N~~~g~~ 194 (244)
T PTZ00451 158 --NGFSKEEALQRIGSQ-MPL-----EEKRRLADYIIENDSADDL 194 (244)
T ss_pred --CCCCHHHHHHHHHhC-CCH-----HHHHHhCCEEEECCCCCCH
Confidence 588999999988553 332 33568899999998 766
No 413
>PLN02422 dephospho-CoA kinase
Probab=98.97 E-value=8.8e-10 Score=112.42 Aligned_cols=163 Identities=16% Similarity=0.106 Sum_probs=101.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc----c----cc----ccc-ccCCCCCCchhhHHHHHH----H
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----S----RI----IDG-NFDDPRLTDYDTLLENIR----G 129 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~----~----~~----i~~-vfq~p~l~d~~tl~e~L~----~ 129 (631)
.+|||+|+.||||||+++.|... +...|+.|..... . .. .|- ++....-.|...+.+.+. .
T Consensus 2 ~~igltG~igsGKstv~~~l~~~--g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~ 79 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKSS--GIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK 79 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHHC--CCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 37999999999999999999853 5567777764210 0 01 111 222233445444444442 1
Q ss_pred hhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHH
Q 006782 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (631)
Q Consensus 130 L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~ 209 (631)
+..-+.+.+|........... .......+++++|.++++.......||..|+|++|.+++..|-+.| +|.+.++
T Consensus 80 ~~~Le~IlHP~V~~~~~~~~~--~~~~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R----~g~s~ee 153 (232)
T PLN02422 80 RQLLNRLLAPYISSGIFWEIL--KLWLKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMAR----DGLSEEQ 153 (232)
T ss_pred HHHHHHHhhHHHHHHHHHHHH--HHHhcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHc----CCCCHHH
Confidence 222344556643222211110 0001224689999999998888889999999999998866554444 4889999
Q ss_pred HHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
+..++. ...|.. .....||+||.|+++.
T Consensus 154 a~~Ri~-~Q~~~e-----ek~~~AD~VI~N~gs~ 181 (232)
T PLN02422 154 ARNRIN-AQMPLD-----WKRSKADIVIDNSGSL 181 (232)
T ss_pred HHHHHH-HcCChh-----HHHhhCCEEEECCCCH
Confidence 888773 333332 2367899999988755
No 414
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.96 E-value=1.2e-10 Score=141.53 Aligned_cols=184 Identities=18% Similarity=0.242 Sum_probs=127.5
Q ss_pred eeEeec-CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCc
Q 006782 42 TLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (631)
Q Consensus 42 ~ls~~~-g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d 119 (631)
+++.+. +....|++|||.+++|+ .+||+|+.|||||+|+.+|.|.+ ...|.+.+.|- ++|++|.|..++
T Consensus 525 sfsW~~~~~~~tL~dIn~~i~~G~---lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------iaYv~Q~pWI~n 595 (1381)
T KOG0054|consen 525 SFSWDSESPEPTLKDINFEIKKGQ---LVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------VAYVPQQPWIQN 595 (1381)
T ss_pred eEecCCCCCcccccceeEEecCCC---EEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------EEEeccccHhhC
Confidence 343333 34448999999999999 89999999999999999999999 67899998874 789999998876
Q ss_pred hhhHHHHHHHhhccc---------------ccc-ccccccc-cc----cccCceeeeecCccEEEEeechhccccccCCC
Q 006782 120 YDTLLENIRGLKEGK---------------AVQ-VPIYDFK-SS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 120 ~~tl~e~L~~L~~g~---------------~I~-~Pvyd~~-~~----~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
.|++||+.+-..-+ +++ .|.=|.. .+ ..+||+++|+..||+|.-+..+.++|++.+.+
T Consensus 596 -gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAV 674 (1381)
T KOG0054|consen 596 -GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAV 674 (1381)
T ss_pred -CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhh
Confidence 58999986532211 111 1211111 11 46789999999999999999999999999988
Q ss_pred cEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCC
Q 006782 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTR 258 (631)
Q Consensus 179 DlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~ 258 (631)
|.. +.. .+..+..+.. -+++|.--|+|+. ...++||-| ++||.|+
T Consensus 675 Dah----vg~--~if~~ci~~~-L~~KT~ILVTHql-------------~~L~~ad~I---------------ivl~~G~ 719 (1381)
T KOG0054|consen 675 DAH----VGK--HIFEECIRGL-LRGKTVILVTHQL-------------QFLPHADQI---------------IVLKDGK 719 (1381)
T ss_pred hHh----hhH--HHHHHHHHhh-hcCCEEEEEeCch-------------hhhhhCCEE---------------EEecCCe
Confidence 873 222 2233333222 2355655556654 123445555 4677777
Q ss_pred cccHHHHHHHhc
Q 006782 259 PVTVDEIKAVMS 270 (631)
Q Consensus 259 ~v~~~~Ik~vL~ 270 (631)
....|...+.+.
T Consensus 720 I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 720 IVESGTYEELLK 731 (1381)
T ss_pred EecccCHHHHHh
Confidence 777777776664
No 415
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.92 E-value=1.6e-09 Score=106.22 Aligned_cols=162 Identities=19% Similarity=0.224 Sum_probs=99.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc----c----c----ccc-cccCCCCCCchhhHHHHHH----Hh
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----S----R----IID-GNFDDPRLTDYDTLLENIR----GL 130 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~----~----~----~i~-~vfq~p~l~d~~tl~e~L~----~L 130 (631)
+|||+|+.||||||+++.|.... +...|..|..... . . ..+ -+++.....+...+.+.+. .+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-HFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEEL 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-CCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHH
Confidence 48999999999999999999874 3567777765211 0 0 011 0112222333333333221 11
Q ss_pred hccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHH
Q 006782 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (631)
Q Consensus 131 ~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~V 210 (631)
..-+.+.+|........... + . .....+++++..+++...+...+|..|+|+++.++++.|.+.|+ |.+.+++
T Consensus 80 ~~le~ilhP~i~~~i~~~i~-~-~-~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~~~~ 152 (188)
T TIGR00152 80 KWLNNLLHPLIREWMKKLLA-Q-F-QSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTEEEV 152 (188)
T ss_pred HHHHHhhCHHHHHHHHHHHH-H-h-hcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 11223445543322221111 0 0 01124788888888777788999999999999998877776665 8899998
Q ss_pred HHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 211 i~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
.+++... .+. ++.+..||++|.|++++
T Consensus 153 ~~r~~~q-~~~-----~~~~~~ad~vI~N~~~~ 179 (188)
T TIGR00152 153 QKRLASQ-MDI-----EERLARADDVIDNSATL 179 (188)
T ss_pred HHHHHhc-CCH-----HHHHHhCCEEEECCCCH
Confidence 8888654 232 34567899999988755
No 416
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.85 E-value=6.8e-09 Score=104.88 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=61.2
Q ss_pred cEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEe
Q 006782 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (631)
Q Consensus 160 ~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~ 238 (631)
.-+|++|..+- ..+.+..|++||++++.+.|..||..|.... ...+.+++..++..+..-+..+...|.....|.++.
T Consensus 121 ~~~Vi~Gr~~~-~~v~~~a~~~ifl~a~~~~Ra~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~I 199 (217)
T TIGR00017 121 DGIIADGRDIG-TVVFPNAEVKIFLDASVEERAKRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYL 199 (217)
T ss_pred CCEEEEEcCcc-eEEeCCCCEEEEEECCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEE
Confidence 35899998643 2355568999999999999888887776432 145779999999888877888888998888787765
Q ss_pred CC
Q 006782 239 NK 240 (631)
Q Consensus 239 N~ 240 (631)
++
T Consensus 200 dt 201 (217)
T TIGR00017 200 DT 201 (217)
T ss_pred EC
Confidence 44
No 417
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.82 E-value=7.3e-09 Score=103.72 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=64.9
Q ss_pred cEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCC--HHHHHHHHHhccccchhhcccCCCCCCeEEE
Q 006782 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE--PEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (631)
Q Consensus 160 ~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s--~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII 237 (631)
+-+|+||-=+. .-+.+..++|||+++..++|-.||....... |.+ .+++++.+.++...+..+-+.|.+...|.++
T Consensus 121 ~~~V~dGRDiG-TvV~PdA~lKiFLtAS~e~RA~RR~~q~~~~-g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~ 198 (222)
T COG0283 121 PGIVADGRDIG-TVVFPDAELKIFLTASPEERAERRYKQLQAK-GFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALL 198 (222)
T ss_pred CCEEEecCCCc-ceECCCCCeEEEEeCCHHHHHHHHHHHHHhc-cCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEE
Confidence 44778876543 3466888999999999999999998876543 533 6999999999999999999999999999998
Q ss_pred eCC
Q 006782 238 INK 240 (631)
Q Consensus 238 ~N~ 240 (631)
.++
T Consensus 199 iDT 201 (222)
T COG0283 199 LDT 201 (222)
T ss_pred EEC
Confidence 754
No 418
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.77 E-value=4.4e-09 Score=102.36 Aligned_cols=144 Identities=14% Similarity=0.134 Sum_probs=92.1
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc-------cccccccCCC----------
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGNFDDP---------- 115 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~-------~~i~~vfq~p---------- 115 (631)
|--+|..+..|+ ++-++||||||||||+..++|++|.+|.|.++|..... +.-.|..|..
T Consensus 15 L~plS~qv~aGe---~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGE---ILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccce---EEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 445677888888 89999999999999999999999999999999975432 2223333222
Q ss_pred --CCC-chhhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEE-------eechhccccccCCCcEEEEEE
Q 006782 116 --RLT-DYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVII-------EGIYALSEKLRPLIDLRVSVT 185 (631)
Q Consensus 116 --~l~-d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIv-------EGi~lL~dEl~~~lDlkIfVd 185 (631)
.++ +..++...|......-.+ -.......++.++++.+++..+.+++- .|.+++.||+.+.+|+.
T Consensus 92 YL~L~qP~~~~a~~i~~i~~~L~l-~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvA---- 166 (248)
T COG4138 92 YLTLHQPDKTRTELLNDVAGALAL-DDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA---- 166 (248)
T ss_pred hhhhcCchHHHHHHHHHHHhhhcc-cchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHH----
Confidence 221 112333333332221111 112334567788999999888776553 36777889999999973
Q ss_pred cChhhHHHHHHHHHHHHhCCCH
Q 006782 186 GGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 186 ad~d~rLiRRI~RDv~erG~s~ 207 (631)
-...+.|+.-.+...|+++
T Consensus 167 ---Q~~aLdrll~~~c~~G~~v 185 (248)
T COG4138 167 ---QQSALDRLLSALCQQGLAI 185 (248)
T ss_pred ---HHHHHHHHHHHHHhCCcEE
Confidence 3334455555555556543
No 419
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.72 E-value=6.4e-09 Score=105.26 Aligned_cols=60 Identities=7% Similarity=0.034 Sum_probs=42.2
Q ss_pred cccccccccCceeeeecCccEEEEee--chhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 141 YDFKSSSRIGYRTLEVPSSRIVIIEG--IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 141 yd~~~~~rs~~~~~~v~~a~VLIvEG--i~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
.+...+..++++.+++..+++++.++ .+++.|||+..+|.. ..+.+.++.+++.++|.++
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~-------~~~~l~~~l~~~~~~g~ti 192 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPR-------DNDRLIETLKRLRDLGNTV 192 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHH-------HHHHHHHHHHHHHhCCCEE
Confidence 34455677888999999999999887 488889999999983 2333444445544445543
No 420
>PRK08118 topology modulation protein; Reviewed
Probab=98.72 E-value=6.5e-08 Score=93.80 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=68.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccccccCCCCCCchhhHHHHHHHhhcccccccccccccccc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~ 147 (631)
-|.|+|++|||||||++.|+..+ +...+++|...... ++ . ..+...+.+.+..+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~~~---~w--~---~~~~~~~~~~~~~~~---------------- 57 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFWKP---NW--E---GVPKEEQITVQNELV---------------- 57 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhccc---CC--c---CCCHHHHHHHHHHHh----------------
Confidence 48999999999999999999987 44556666542110 10 0 011111111111110
Q ss_pred ccCceeeeecCccEEEEeechhc-cccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 148 RIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 148 rs~~~~~~v~~a~VLIvEGi~lL-~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
..+-+|+||.|.- .+...+.+|..||+++|.++++.|.+.|.+..+|.+.
T Consensus 58 ----------~~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~ 108 (167)
T PRK08118 58 ----------KEDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGKTR 108 (167)
T ss_pred ----------cCCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCCCC
Confidence 1124788998873 3555567999999999999999999999887666543
No 421
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.69 E-value=1.5e-08 Score=101.43 Aligned_cols=162 Identities=18% Similarity=0.194 Sum_probs=98.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc---c-----cccccccCC-----CCCCchhhHHHHHH----
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS---S-----RIIDGNFDD-----PRLTDYDTLLENIR---- 128 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~---~-----~~i~~vfq~-----p~l~d~~tl~e~L~---- 128 (631)
+.+|||+|..||||||+++.+.. + +.-+|+.|..... + ..+.-.|.. ...++...+.+.+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~-G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~ 79 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L-GFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPE 79 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c-CCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHH
Confidence 46999999999999999999999 4 5567888875321 0 011111211 11233333333221
Q ss_pred HhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHH
Q 006782 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (631)
Q Consensus 129 ~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e 208 (631)
....-+.+.+|........... .....++++|-.+++.-.....+|..|.|++|.++++.|-+.|+ +.+.+
T Consensus 80 ~~~~Le~i~hPli~~~~~~~~~-----~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~----~~~~e 150 (201)
T COG0237 80 ARLKLEKILHPLIRAEIKVVID-----GARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD----GLDEE 150 (201)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH-----HhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcC----CCCHH
Confidence 1112233445533222111000 11112788888888876666669999999999999887776665 67877
Q ss_pred HHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCC
Q 006782 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (631)
Q Consensus 209 ~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (631)
.+...... .+|..+ ....||+|+.|++++.
T Consensus 151 ~~~~~~~~-Q~~~~e-----k~~~ad~vi~n~~~i~ 180 (201)
T COG0237 151 DAEARLAS-QRDLEE-----KLALADVVIDNDGSIE 180 (201)
T ss_pred HHHHHHHh-cCCHHH-----HHhhcCChhhcCCCHH
Confidence 77776633 334433 3689999999887663
No 422
>PRK07261 topology modulation protein; Provisional
Probab=98.68 E-value=3.7e-08 Score=95.74 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=80.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccccccCCCCCCchhhHHHHHHHhhcccccccccccccccc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~ 147 (631)
.|+|+|++|||||||++.|+..+ +...+++|...... .++.. +...+...+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~~-----~~~~~---~~~~~~~~~~~~----------------- 55 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQP-----NWQER---DDDDMIADISNF----------------- 55 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEecc-----ccccC---CHHHHHHHHHHH-----------------
Confidence 48999999999999999999886 34467777543211 01111 111122222111
Q ss_pred ccCceeeeecCccEEEEeechhc-c-ccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhc
Q 006782 148 RIGYRTLEVPSSRIVIIEGIYAL-S-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAF 225 (631)
Q Consensus 148 rs~~~~~~v~~a~VLIvEGi~lL-~-dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~f 225 (631)
+.... +|+||.|.- . +.....+|..||++.|...++.|.+.|.+..+|++.+.+..++.+.....+-+|
T Consensus 56 --------~~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r~~l~~g~~e~~~~~~l~~ 126 (171)
T PRK07261 56 --------LLKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTRESMAENCPEKFDWEFIKW 126 (171)
T ss_pred --------HhCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcCccccCCCcccCCHHHHHH
Confidence 11123 899999875 2 555568999999999999999999999998888876655554444333334444
Q ss_pred c
Q 006782 226 I 226 (631)
Q Consensus 226 I 226 (631)
+
T Consensus 127 i 127 (171)
T PRK07261 127 I 127 (171)
T ss_pred H
Confidence 4
No 423
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=5.3e-09 Score=115.21 Aligned_cols=137 Identities=16% Similarity=0.137 Sum_probs=86.1
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC----CCceEEEECCcc-cc------ccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYN-DS------SRIID 109 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll----p~~G~I~lDg~~-~~------~~~i~ 109 (631)
..|+..+|.+.+|.+.++.+..|. -+|++|+||+|||||+|+|+.-. |..-.+.-|... .. .....
T Consensus 84 ~~fdLa~G~k~LL~~a~L~L~~Gr---RYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~d 160 (582)
T KOG0062|consen 84 DNFDLAYGGKILLNKANLTLSRGR---RYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLD 160 (582)
T ss_pred eeeeeeecchhhhcCCceeeeccc---ccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHH
Confidence 456667788999999999999999 49999999999999999999832 222222222111 00 01123
Q ss_pred cccCCCCCCchhhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++.+++.+....++.+....+..|-......-...+...+||.+.+++.++++..++.++|+|||+++||+
T Consensus 161 fl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv 231 (582)
T KOG0062|consen 161 FLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDV 231 (582)
T ss_pred HHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchh
Confidence 34444333222122222221222211110111122355678899999999999999999999999999994
No 424
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.66 E-value=7.4e-09 Score=111.09 Aligned_cols=124 Identities=15% Similarity=0.148 Sum_probs=79.9
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCchh---
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYD--- 121 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~~--- 121 (631)
+.-||+++++|+ +|-|+|.||||||||++.|.|+. |.+|.|.+||..... .-+..+|.+..+||..
T Consensus 339 vgPiNl~ikrGe---lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~ 415 (546)
T COG4615 339 VGPINLTIKRGE---LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGP 415 (546)
T ss_pred ecceeeEEecCc---EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence 678999999999 99999999999999999999999 999999999985543 2244566666555432
Q ss_pred -------hHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 122 -------TLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 122 -------tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
.+...++.+.-...+.+..-.++.-..+.|++.+++.--.++-|-.++..||....-|
T Consensus 416 e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQD 480 (546)
T COG4615 416 EGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQD 480 (546)
T ss_pred ccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCC
Confidence 2334444443333333333344444555566665544333444444444466544333
No 425
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.66 E-value=9.5e-08 Score=112.01 Aligned_cols=76 Identities=11% Similarity=0.104 Sum_probs=64.0
Q ss_pred EEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCC
Q 006782 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (631)
Q Consensus 161 VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (631)
-+|+||--+- .-+.+..|+|||++++.++|..||..+... .+.+++.+.+..+.+-+. +.+.|.+...|.++.++
T Consensus 139 ~~v~eGRdig-tvv~p~a~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idt 213 (712)
T PRK09518 139 GIVAEGRDIT-TVVAPDAEVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDN 213 (712)
T ss_pred cEEEecCccc-eEEecCCCeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEEC
Confidence 4889987765 345567899999999999999999888753 789999999999999999 99999988888777655
Q ss_pred C
Q 006782 241 F 241 (631)
Q Consensus 241 ~ 241 (631)
.
T Consensus 214 s 214 (712)
T PRK09518 214 S 214 (712)
T ss_pred C
Confidence 3
No 426
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.65 E-value=5.4e-09 Score=103.88 Aligned_cols=120 Identities=11% Similarity=0.094 Sum_probs=76.7
Q ss_pred eeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCc---------eEEEECCccc----cccccccccCCCCCCc
Q 006782 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI---------AVITMDNYND----SSRIIDGNFDDPRLTD 119 (631)
Q Consensus 54 ~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~---------G~I~lDg~~~----~~~~i~~vfq~p~l~d 119 (631)
+++++.+.+| +++|+||||||||||+++|.+++ +.. +.+.+++... ..+.++++||++..+.
T Consensus 14 ~~~~l~~~~g----~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG----LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC----cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence 5778888764 69999999999999999999887 321 2344444432 1246789999998761
Q ss_pred hhhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEE----eechhccccccCCCcEE
Q 006782 120 YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVII----EGIYALSEKLRPLIDLR 181 (631)
Q Consensus 120 ~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIv----EGi~lL~dEl~~~lDlk 181 (631)
...-.+.+..+.+. ....+...+..++|+.+++..+.+++. ++.+++.|||+..+|..
T Consensus 90 ~~~~~~~~~~~l~~----~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~ 151 (197)
T cd03278 90 SIISQGDVSEIIEA----PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDA 151 (197)
T ss_pred eEEehhhHHHHHhC----CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHH
Confidence 11011222222211 112233345667778888887776642 34677789999999973
No 427
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.65 E-value=1.2e-08 Score=101.09 Aligned_cols=165 Identities=19% Similarity=0.196 Sum_probs=106.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc--------ccccccccCCCCCC-----chhhHHHHHH----
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--------SRIIDGNFDDPRLT-----DYDTLLENIR---- 128 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~--------~~~i~~vfq~p~l~-----d~~tl~e~L~---- 128 (631)
+++||++|+.||||||+++.+.+. +..+|..|-.... .+.+--.|.+..+. +...+.+.+.
T Consensus 1 M~iVGLTGgiatGKStVs~~f~~~--G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~ 78 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFKAL--GIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPK 78 (225)
T ss_pred CeEEEeecccccChHHHHHHHHHc--CCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHH
Confidence 469999999999999999999865 4556666543110 01222233332221 2222222221
Q ss_pred HhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHH
Q 006782 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (631)
Q Consensus 129 ~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e 208 (631)
....-+.+.+|........... +.-+...+++++|-+++|.-.+...+...|.|.||.++.+.|-+.|| +.+.+
T Consensus 79 ~r~~Ln~IthP~Ir~em~ke~~--~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd----~lse~ 152 (225)
T KOG3220|consen 79 KRQALNKITHPAIRKEMFKEIL--KLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERD----ELSEE 152 (225)
T ss_pred HHHHHHhcccHHHHHHHHHHHH--HHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhc----cccHH
Confidence 1112234566655444322111 23356788999999999988888999999999999999887777776 78888
Q ss_pred HHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCC
Q 006782 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (631)
Q Consensus 209 ~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (631)
+.-++.. .+.-++...+.||+||.|+.+++
T Consensus 153 dAe~Rl~------sQmp~~~k~~~a~~Vi~Nng~~~ 182 (225)
T KOG3220|consen 153 DAENRLQ------SQMPLEKKCELADVVIDNNGSLE 182 (225)
T ss_pred HHHHHHH------hcCCHHHHHHhhheeecCCCChH
Confidence 8777773 23444556789999999987663
No 428
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.64 E-value=6.1e-08 Score=116.57 Aligned_cols=161 Identities=15% Similarity=0.116 Sum_probs=113.4
Q ss_pred eeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C--CceEEEECCcccc----ccccc
Q 006782 37 VPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS----SRIID 109 (631)
Q Consensus 37 ~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p--~~G~I~lDg~~~~----~~~i~ 109 (631)
.+++.....+.+.+.+|++|+=-+.+|. +.||+|.||||||||++.|++.. . -.|.|.++|+... +|.+|
T Consensus 791 ~dl~~~~~~qG~~~qLL~~V~G~~kPG~---LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~G 867 (1391)
T KOG0065|consen 791 VDLPYEMPIQGGTRQLLNNVSGAFKPGV---LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSG 867 (1391)
T ss_pred EeCCccccccccceEhhhcCceEecCCc---eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccc
Confidence 3444444344467789999999999998 99999999999999999999996 2 4688999998665 36789
Q ss_pred cccCCCCCCchhhHHHHHHH---hhcccc----------------cccccccc-cccc----ccCceeeeecCccEEEEe
Q 006782 110 GNFDDPRLTDYDTLLENIRG---LKEGKA----------------VQVPIYDF-KSSS----RIGYRTLEVPSSRIVIIE 165 (631)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~---L~~g~~----------------I~~Pvyd~-~~~~----rs~~~~~~v~~a~VLIvE 165 (631)
|+-|++.-.+..||+|-|.. |+.-.. ++.+.|.. ..+. .+.+++.++..+-=|+-.
T Consensus 868 YvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~ 947 (1391)
T KOG0065|consen 868 YVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVAN 947 (1391)
T ss_pred eeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecC
Confidence 99998887888999999864 332111 11221111 1111 333455566665557777
Q ss_pred e-chhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 166 G-IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 166 G-i~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
| .++|.|||++.||-. .--.+-|+.|.+.+.|+++
T Consensus 948 P~~ilFLDEPTSGLDsq-------aA~~i~~~lrkla~tGqtI 983 (1391)
T KOG0065|consen 948 PSSILFLDEPTSGLDSQ-------AAAIVMRFLRKLADTGQTI 983 (1391)
T ss_pred CceeEEecCCCCCccHH-------HHHHHHHHHHHHHhcCCeE
Confidence 7 777889999999963 1223556777777788864
No 429
>COG4240 Predicted kinase [General function prediction only]
Probab=98.63 E-value=1.9e-07 Score=94.19 Aligned_cols=167 Identities=17% Similarity=0.296 Sum_probs=104.8
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHHhC---C--CceEEEECCcccccc-------ccccccC---CCCCCchhhHHHH
Q 006782 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM---P--SIAVITMDNYNDSSR-------IIDGNFD---DPRLTDYDTLLEN 126 (631)
Q Consensus 62 ~gekp~IIGI~GpsGSGKSTLlr~L~~ll---p--~~G~I~lDg~~~~~~-------~i~~vfq---~p~l~d~~tl~e~ 126 (631)
+-++|+|+||.||.||||||++-.|..++ . ..+..++|+++.+.. ...-..| -|...|.....++
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 34569999999999999999999998876 2 567899999876541 1111112 2445676667777
Q ss_pred HHHhhcc-ccccccccccccc----cccC-ceeeeecCccEEEEeechhcc-c---c-----ccCC--------------
Q 006782 127 IRGLKEG-KAVQVPIYDFKSS----SRIG-YRTLEVPSSRIVIIEGIYALS-E---K-----LRPL-------------- 177 (631)
Q Consensus 127 L~~L~~g-~~I~~Pvyd~~~~----~rs~-~~~~~v~~a~VLIvEGi~lL~-d---E-----l~~~-------------- 177 (631)
|..+.+| .+|.+|.||.+.+ +|.. ++... .+.+++|+||.++.. + + ..+.
T Consensus 126 Lnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik-~~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed~a~~~dvN~ 204 (300)
T COG4240 126 LNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIK-FEVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRADVND 204 (300)
T ss_pred HHHHhcCCCCcccccccchhccCCCCCCCccccee-cceeEEEEeeeeeecccCCHHHhCCCCccchhhccccHHHHHHh
Confidence 7777665 4578999999764 3422 22222 338999999988754 2 1 1111
Q ss_pred -----------CcEEEEEEcC-hhhHHHHHHHHHHH-----HhCCCHHHHHHHHHhccccchhhcccCCC
Q 006782 178 -----------IDLRVSVTGG-VHFDLVKRVFRDIQ-----RVGQEPEEIIHQISETVYPMYKAFIEPDL 230 (631)
Q Consensus 178 -----------lDlkIfVdad-~d~rLiRRI~RDv~-----erG~s~e~Vi~q~~~~v~P~~~~fIeP~k 230 (631)
+|--|-++++ ...-+.||.+...+ ..|++-+++.. +.+..+|.|+-|+.+..
T Consensus 205 kLa~Y~pL~~rIdsLillta~din~vy~WRlQqEhkliAr~~kgmsdeqv~e-fvn~ymrsl~lylq~ls 273 (300)
T COG4240 205 KLAPYRPLFDRIDSLILLTAPDINTVYAWRLQQEHKLIARLAKGMSDEQVSE-FVNAYMRSLELYLQRLS 273 (300)
T ss_pred hhhhhHHHHHHhhheeEecccchHHHHHHHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 1223444443 33445566665543 24778777544 44666777777766544
No 430
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.63 E-value=2.3e-07 Score=92.01 Aligned_cols=163 Identities=23% Similarity=0.334 Sum_probs=106.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC-------CCceEEEECCccccccc---c------ccccCC---CCCCchhhHH
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM-------PSIAVITMDNYNDSSRI---I------DGNFDD---PRLTDYDTLL 124 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll-------p~~G~I~lDg~~~~~~~---i------~~vfq~---p~l~d~~tl~ 124 (631)
+.|++||+.||.||||||++-+|-..+ ..++.+++|+++.+... + .-..|+ +...|...+.
T Consensus 29 ~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~ 108 (282)
T KOG2878|consen 29 DVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLV 108 (282)
T ss_pred cCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHH
Confidence 348999999999999999998876554 26899999999765411 1 111222 3446666677
Q ss_pred HHHHHhhc----cccccccccccccc----cccC-ceeeeecCccEEEEeechhccccc-------cC-----C------
Q 006782 125 ENIRGLKE----GKAVQVPIYDFKSS----SRIG-YRTLEVPSSRIVIIEGIYALSEKL-------RP-----L------ 177 (631)
Q Consensus 125 e~L~~L~~----g~~I~~Pvyd~~~~----~rs~-~~~~~v~~a~VLIvEGi~lL~dEl-------~~-----~------ 177 (631)
+.|..+.+ +..+.+|.||.+.. .|.. ++...+.+..++|+||+++....+ .+ +
T Consensus 109 evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~~~~v~a~d~l~Gdl~~VN~k 188 (282)
T KOG2878|consen 109 EVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLPADVVKAVDPLQGDLEVVNKK 188 (282)
T ss_pred HHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccchhheeccCcccccHHHHhhH
Confidence 77776654 34588999999863 2322 356667788999999998864211 11 1
Q ss_pred -----------CcEEEEEEc-ChhhHHHHHHHHHHH-----HhCCCHHHHHHHHHhccccchhhccc
Q 006782 178 -----------IDLRVSVTG-GVHFDLVKRVFRDIQ-----RVGQEPEEIIHQISETVYPMYKAFIE 227 (631)
Q Consensus 178 -----------lDlkIfVda-d~d~rLiRRI~RDv~-----erG~s~e~Vi~q~~~~v~P~~~~fIe 227 (631)
.|-.|.+.+ +..--..||++.... ..|++-|+|.+.. .+.+|.|..|+-
T Consensus 189 L~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~FV-~rYmP~Yk~YL~ 254 (282)
T KOG2878|consen 189 LEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVNDFV-SRYMPAYKAYLP 254 (282)
T ss_pred HHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHHHH-HhhhhHHHhhhh
Confidence 112233333 233345567766643 3488999976644 777899987763
No 431
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.61 E-value=1.2e-08 Score=103.32 Aligned_cols=126 Identities=19% Similarity=0.127 Sum_probs=75.8
Q ss_pred cCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh----------------C-CCce--------EEEECCc
Q 006782 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF----------------M-PSIA--------VITMDNY 101 (631)
Q Consensus 47 ~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l----------------l-p~~G--------~I~lDg~ 101 (631)
++...++.+++ ++ +++|+||||||||||+++|... + ++.| .|.+++.
T Consensus 12 y~~~~~~~~~~-----~~---~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~ 83 (243)
T cd03272 12 YKDQTVIEPFS-----PK---HNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNS 83 (243)
T ss_pred cccCcccccCC-----CC---cEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcC
Confidence 34445566665 45 8999999999999999999843 2 3333 4444442
Q ss_pred cc----------cccccccccCCCCCCch-hhHHHHHHHhhc-ccccc----------------c-cccccccccccCce
Q 006782 102 ND----------SSRIIDGNFDDPRLTDY-DTLLENIRGLKE-GKAVQ----------------V-PIYDFKSSSRIGYR 152 (631)
Q Consensus 102 ~~----------~~~~i~~vfq~p~l~d~-~tl~e~L~~L~~-g~~I~----------------~-Pvyd~~~~~rs~~~ 152 (631)
.. ..+.++++++++.+++. .+..+....+.. +-... . +..+......++|+
T Consensus 84 ~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~ 163 (243)
T cd03272 84 DNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQ 163 (243)
T ss_pred CCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHH
Confidence 10 01346777777666652 244333332221 10000 0 01223334567788
Q ss_pred eeeecCccEEEE----eechhccccccCCCcE
Q 006782 153 TLEVPSSRIVII----EGIYALSEKLRPLIDL 180 (631)
Q Consensus 153 ~~~v~~a~VLIv----EGi~lL~dEl~~~lDl 180 (631)
.+++..++.++. ++.+++.||++..+|.
T Consensus 164 ~~r~~la~~l~~~~~~~~~illlDEp~~~ld~ 195 (243)
T cd03272 164 KSLVALALIFAIQKCDPAPFYLFDEIDAALDA 195 (243)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEECCccCCCH
Confidence 888888888853 4678888999999997
No 432
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.58 E-value=6.1e-08 Score=87.36 Aligned_cols=116 Identities=22% Similarity=0.373 Sum_probs=68.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccccccCCCCCCch-hhHHHHHHHhhccccccccccccccc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDY-DTLLENIRGLKEGKAVQVPIYDFKSS 146 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~d~-~tl~e~L~~L~~g~~I~~Pvyd~~~~ 146 (631)
+|+|.|++||||||+++.|+..+ +.-.|++|++....... -++++. ... ....+.+.......
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~-~~~~i~~d~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~l~~~------------ 64 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL-GFPVISMDDLIREPGWI--ERDDDE-REYIDADIDLLDDILEQL------------ 64 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TCEEEEEHHHHCCGTHC--HGCTTC-CHHHHHHHHHHHHHHHHH------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-CCeEEEecceEEecccc--ccCcch-hhHHHHHHHHHHHHHHhh------------
Confidence 58999999999999999999987 55678888732111111 111111 111 11111111111000
Q ss_pred cccCceeeeecCccEEEEeechhcccc-ccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCC
Q 006782 147 SRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (631)
Q Consensus 147 ~rs~~~~~~v~~a~VLIvEGi~lL~dE-l~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s 206 (631)
........++++|.+...-+ .....|..||++++.+.++.+++.|...++|++
T Consensus 65 -------~~~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~ 118 (121)
T PF13207_consen 65 -------QNKPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRD 118 (121)
T ss_dssp -------HETTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESS
T ss_pred -------hccCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCC
Confidence 00234567899996551111 223456889999998888889999999888876
No 433
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.55 E-value=1e-07 Score=86.30 Aligned_cols=69 Identities=17% Similarity=0.036 Sum_probs=52.7
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc-------ccccccccCCCCCCchhh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDT 122 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~t 122 (631)
.++|++++|.+++|+ +++|+||||||||||++++. .|.+.+++.+.. .+..++++|+ +| +.+
T Consensus 2 ~~aL~~vsl~i~~ge---~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKV---GVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EIR 70 (107)
T ss_pred ceEEEeeEEEEcCCE---EEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hhh
Confidence 368999999999998 89999999999999999986 466777775332 1234566665 33 458
Q ss_pred HHHHHHH
Q 006782 123 LLENIRG 129 (631)
Q Consensus 123 l~e~L~~ 129 (631)
+++||..
T Consensus 71 i~~Ni~~ 77 (107)
T cd00820 71 LRLNIFL 77 (107)
T ss_pred HHhhcee
Confidence 8888865
No 434
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.53 E-value=4.4e-08 Score=98.05 Aligned_cols=122 Identities=15% Similarity=0.091 Sum_probs=69.7
Q ss_pred eeceeEec-cCCccEEEEEECCCCCcHHHHHHHHHHhC--CCceEEEECC----cc--ccccccccccCCCCC------C
Q 006782 54 RACQLLAQ-KNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN----YN--DSSRIIDGNFDDPRL------T 118 (631)
Q Consensus 54 ~~Isl~i~-~gekp~IIGI~GpsGSGKSTLlr~L~~ll--p~~G~I~lDg----~~--~~~~~i~~vfq~p~l------~ 118 (631)
..|+|... +|+ +++|+|+||||||||+++|...+ +..+....+. .. .....++++||++.. +
T Consensus 18 ~~i~~~~~~~~~---~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNG---LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERS 94 (213)
T ss_pred eEEeCCCCCccC---EEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEe
Confidence 45666543 355 89999999999999999999654 2222222211 11 112345666766543 1
Q ss_pred chhhHHHHHHH--hhccccccccccccccccccCceeeeecCccEEEE----------eechhccccccCCCcE
Q 006782 119 DYDTLLENIRG--LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVII----------EGIYALSEKLRPLIDL 180 (631)
Q Consensus 119 d~~tl~e~L~~--L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIv----------EGi~lL~dEl~~~lDl 180 (631)
......+..+. +..+. ..+..+...+..++++.+++..+++++. ++.+++.||++..+|.
T Consensus 95 ~gl~~~~~~~~~~l~~g~--l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~ 166 (213)
T cd03279 95 RGLDYDQFTRIVLLPQGE--FDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDP 166 (213)
T ss_pred cCCCHHHHHHhhhhhhcc--hHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCH
Confidence 11111111111 11110 0122233445667778888888888764 4467888999999997
No 435
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.51 E-value=2.1e-07 Score=103.93 Aligned_cols=172 Identities=17% Similarity=0.206 Sum_probs=124.8
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc--------cccccccCCC---CCCc
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDGNFDDP---RLTD 119 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~--------~~i~~vfq~p---~l~d 119 (631)
.++++||.+.+|+ |+||.|--|||+|-++++|.|.. +..|.|.+||..... ..++|++.+- .++.
T Consensus 274 ~~~dvSf~vr~GE---IlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGE---ILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCc---EEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 4889999999999 99999999999999999999977 689999999984332 3467777653 4566
Q ss_pred hhhHHHHHHHh--hc---------------------cccccccccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 120 YDTLLENIRGL--KE---------------------GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 120 ~~tl~e~L~~L--~~---------------------g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
..++.+|+... .. .-.+..|..+......+||..+++-.++.+..++.+++.|||+.
T Consensus 351 ~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTR 430 (500)
T COG1129 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTR 430 (500)
T ss_pred CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCc
Confidence 66777776322 11 11233444555556788888999999999999999999999999
Q ss_pred CCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 177 ~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
..|+- ...-+-++.|++...|.+ =++|..+..---+.|++|+||+.
T Consensus 431 GIDVG-------AK~eIy~li~~lA~~G~a---------------------------il~iSSElpEll~~~DRIlVm~~ 476 (500)
T COG1129 431 GIDVG-------AKAEIYRLIRELAAEGKA---------------------------ILMISSELPELLGLSDRILVMRE 476 (500)
T ss_pred Ccccc-------hHHHHHHHHHHHHHCCCE---------------------------EEEEeCChHHHHhhCCEEEEEEC
Confidence 99983 122344566666665643 34444333333578899999988
Q ss_pred CCcc
Q 006782 257 TRPV 260 (631)
Q Consensus 257 ~~~v 260 (631)
++.+
T Consensus 477 Gri~ 480 (500)
T COG1129 477 GRIV 480 (500)
T ss_pred CEEE
Confidence 7654
No 436
>PRK06217 hypothetical protein; Validated
Probab=98.50 E-value=3.7e-07 Score=89.23 Aligned_cols=104 Identities=19% Similarity=0.172 Sum_probs=65.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccccccCCCCCCchhhHHHHHHHhhcccccccccccccccc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~ 147 (631)
.|.|+|++||||||+++.|+..+ +...+++|.+........+.... +.....+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l-~~~~~~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------------- 60 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL-DIPHLDTDDYFWLPTDPPFTTKR----PPEERLRLLLED----------------- 60 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCcEEEcCceeeccCCCCccccC----CHHHHHHHHHHH-----------------
Confidence 59999999999999999999998 44577777654321110000000 000001100000
Q ss_pred ccCceeeeecCccEEEEeechhcc-ccccCCCcEEEEEEcChhhHHHHHHHHHHH
Q 006782 148 RIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (631)
Q Consensus 148 rs~~~~~~v~~a~VLIvEGi~lL~-dEl~~~lDlkIfVdad~d~rLiRRI~RDv~ 201 (631)
+....-+|++|.+... +.+...+|..|||++|.++++.|...|...
T Consensus 61 --------~~~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 61 --------LRPREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred --------HhcCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCccc
Confidence 0011247888998864 556788999999999999988888878754
No 437
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.50 E-value=3.1e-07 Score=91.83 Aligned_cols=143 Identities=13% Similarity=0.177 Sum_probs=92.6
Q ss_pred eeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc-----ccc---c--
Q 006782 36 IVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY-----NDS---S-- 105 (631)
Q Consensus 36 i~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~-----~~~---~-- 105 (631)
+.++...+....|...+++++|+++.+|+ |-|++|.||||||-++++|++...+.-.|..|.+ +.. +
T Consensus 6 IrnL~IE~~TsqG~vK~VD~v~ltlnEGE---i~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 6 IRNLTIEFKTSQGWVKAVDRVSMTLNEGE---IRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccceEEEEecCCCceEeeeeeeeeeccce---eeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 33444445566788899999999999999 9999999999999999999999855555555544 211 1
Q ss_pred ------cccccccCCCCC--CchhhHHHHHHH-hh---------------cccccc----ccccccc------cccccCc
Q 006782 106 ------RIIDGNFDDPRL--TDYDTLLENIRG-LK---------------EGKAVQ----VPIYDFK------SSSRIGY 151 (631)
Q Consensus 106 ------~~i~~vfq~p~l--~d~~tl~e~L~~-L~---------------~g~~I~----~Pvyd~~------~~~rs~~ 151 (631)
+.+.++||+|.. -+..++...|-. +- +...++ +-+.|+. ..+...|
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeG 162 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEG 162 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccC
Confidence 346789999864 334444433321 10 001111 0011111 1223344
Q ss_pred eeeeecCccEEEEeechhccccccCCCcEE
Q 006782 152 RTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 152 ~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
+-+.+-.+-++...+.+++.||+++.++..
T Consensus 163 E~QKVMIA~A~AnqPrLLIADEPTN~~e~~ 192 (330)
T COG4170 163 ECQKVMIAIALANQPRLLIADEPTNSMEPT 192 (330)
T ss_pred cceeeeeehhhccCCceEeccCCCcccCcc
Confidence 556666677777888888899999999974
No 438
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.49 E-value=8.7e-08 Score=92.20 Aligned_cols=146 Identities=19% Similarity=0.255 Sum_probs=90.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc-cccccccccccCCCCCCchhhHHHHHHHhhccccccccccccccc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY-NDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~-~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~ 146 (631)
+|.|.|++||||||+++.|+..+ +--.|+-+.. ....+..++- +.+.-. +. -..|.+|....
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-gl~~vsaG~iFR~~A~e~gms-----------l~ef~~-~A----E~~p~iD~~iD 64 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-GLKLVSAGTIFREMARERGMS-----------LEEFSR-YA----EEDPEIDKEID 64 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-CCceeeccHHHHHHHHHcCCC-----------HHHHHH-HH----hcCchhhHHHH
Confidence 68999999999999999999997 2222322211 1111122221 111111 11 12455555554
Q ss_pred cccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcc
Q 006782 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFI 226 (631)
Q Consensus 147 ~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fI 226 (631)
.+.. .....+-+|+||-++..= .....|++||+.+|..+|..|-..|+ |.+.+++..+..++.+-..++|-
T Consensus 65 ~rq~----e~a~~~nvVlegrLA~Wi-~k~~adlkI~L~Apl~vRa~Ria~RE----gi~~~~a~~~~~~RE~se~kRY~ 135 (179)
T COG1102 65 RRQK----ELAKEGNVVLEGRLAGWI-VREYADLKIWLKAPLEVRAERIAKRE----GIDVDEALAETVEREESEKKRYK 135 (179)
T ss_pred HHHH----HHHHcCCeEEhhhhHHHH-hccccceEEEEeCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4422 123356789999988641 12678999999999988766555554 89999998888777666655553
Q ss_pred c------CCCCCCeEEEeC
Q 006782 227 E------PDLQTAHIKIIN 239 (631)
Q Consensus 227 e------P~k~~ADiII~N 239 (631)
. ......|+||+.
T Consensus 136 ~~YgIDidDlSiyDLVinT 154 (179)
T COG1102 136 KIYGIDIDDLSIYDLVINT 154 (179)
T ss_pred HHhCCCCccceeeEEEEec
Confidence 2 235677888863
No 439
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.48 E-value=2.1e-07 Score=94.53 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=56.8
Q ss_pred cEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCe-EEE
Q 006782 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKI 237 (631)
Q Consensus 160 ~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~AD-iII 237 (631)
.-+|++|..+. +.+.+..|++|||+++.+.|..||..+.... .+.+.+++.+.+.++.+-...+++.|.+..+| ++|
T Consensus 123 ~~~Vi~GR~~~-~~vl~~a~~~ifl~a~~e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~I 201 (225)
T PRK00023 123 PGLVMDGRDIG-TVVFPDAELKIFLTASAEERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLL 201 (225)
T ss_pred CCEEEEecChh-eEEeCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEE
Confidence 45888898532 2345558999999999998866665554322 25678888888888877777788899888887 555
Q ss_pred eC
Q 006782 238 IN 239 (631)
Q Consensus 238 ~N 239 (631)
++
T Consensus 202 DT 203 (225)
T PRK00023 202 DT 203 (225)
T ss_pred EC
Confidence 43
No 440
>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.
Probab=98.46 E-value=7.1e-07 Score=85.27 Aligned_cols=84 Identities=10% Similarity=0.086 Sum_probs=71.9
Q ss_pred cceeeeeecCCEEEEEEeeeecCCCeeecceeEeeeehhhHHHHhhcCCeEEEEEEeeeeEeecCcEEEEeecccccCcc
Q 006782 296 QSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRK 375 (631)
Q Consensus 296 de~LRvR~~dg~~~LtykG~~~d~p~isrp~~ef~V~v~il~GL~~LGy~~~a~v~k~re~y~~~~~~i~lD~ve~Lg~~ 375 (631)
+..+|+|..++.+.|||||++.+ .+|.+.+++|+.....-|.. +..+..|.|.|.+|..++.++++|.++|+| .
T Consensus 34 ~~~lRiR~~~~~~~lT~K~~~~~---~~R~E~E~~i~~~~~~~l~~--~~~~~~I~K~R~~~~~~~~~~~lD~~~g~~-~ 107 (148)
T cd07891 34 ERTVRVRIAGDRAYLTIKGPTNG---LSRYEFEYEIPLADAEELLA--LCEGPVIEKTRYRVPHGGHTWEVDVFHGEN-A 107 (148)
T ss_pred CcEEEEEEeCCEEEEEEEeCCCC---ceEEEEEEeCCHHHHHHHHh--cCCCCeEEEEEEEEEeCCEEEEEEEEcCCC-C
Confidence 46899999999999999999877 56888888887776667765 567789999999999999999999999999 6
Q ss_pred ---eEEEEeccHH
Q 006782 376 ---YVQVQGRDRL 385 (631)
Q Consensus 376 ---FveI~g~~~~ 385 (631)
|+||+..+-+
T Consensus 108 gL~~~EiE~~~e~ 120 (148)
T cd07891 108 GLVVAEIELPSED 120 (148)
T ss_pred ceEEEEEEcCCcc
Confidence 9999776544
No 441
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.46 E-value=8.8e-08 Score=108.78 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=86.6
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC-CceEEEECCccccccccccccCCCCC----------
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPRL---------- 117 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp-~~G~I~lDg~~~~~~~i~~vfq~p~l---------- 117 (631)
....+++.+|.+++|+ -+-|.|+||||||||+|+|+|+-| +.|.|.+-.. ..+-|++|.|.+
T Consensus 405 ~~~ll~~l~~~v~~G~---~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~----~~~lflpQ~PY~p~GtLre~l~ 477 (604)
T COG4178 405 GQTLLSELNFEVRPGE---RLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD----SALLFLPQRPYLPQGTLREALC 477 (604)
T ss_pred CCeeeccceeeeCCCC---EEEEECCCCCCHHHHHHHHhccCccCCCceecCCC----CceEEecCCCCCCCccHHHHHh
Confidence 3478999999999999 699999999999999999999986 6777766421 123344444432
Q ss_pred -------CchhhHHHHHHHhhcccccc-ccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 -------TDYDTLLENIRGLKEGKAVQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 -------~d~~tl~e~L~~L~~g~~I~-~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
++...+.+.|....-++-++ ...-+.-....++|+.+++.-+++++-.|.+++.||.++.+|.
T Consensus 478 YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 478 YPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred CCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 44444444443322111110 0011111234677899999999999999999999999999997
No 442
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.43 E-value=2.2e-07 Score=108.05 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=65.1
Q ss_pred EEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCC--CHHHHHHHHHhccccchhhcccCCCCCCeEEEe
Q 006782 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (631)
Q Consensus 161 VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~--s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~ 238 (631)
-+|+||--+- .-+.+..|+|||++++.++|..||..+.. ++|. +.+++.+++.++++-+..+++.|.+...|.|+.
T Consensus 558 ~~v~eGRdig-tvv~p~a~~kifl~a~~~~Ra~Rr~~~~~-~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~i 635 (661)
T PRK11860 558 GLVADGRDMG-TVIFPDAALKVFLTASAEARAERRYKQLI-SKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLL 635 (661)
T ss_pred CEEEECCCCc-cEECCCCCeEEEEECChhHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEE
Confidence 4788987664 45667799999999999999988877644 3454 899999999999999999999999998888876
Q ss_pred CCC
Q 006782 239 NKF 241 (631)
Q Consensus 239 N~~ 241 (631)
++.
T Consensus 636 dts 638 (661)
T PRK11860 636 DNS 638 (661)
T ss_pred ECC
Confidence 543
No 443
>PRK01184 hypothetical protein; Provisional
Probab=98.42 E-value=2.8e-07 Score=89.62 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=48.0
Q ss_pred ccEEEEeechhcc--ccccCCCc---EEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCC
Q 006782 159 SRIVIIEGIYALS--EKLRPLID---LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTA 233 (631)
Q Consensus 159 a~VLIvEGi~lL~--dEl~~~lD---lkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~A 233 (631)
..+++++|...+. +.++..++ ..|+|+++.+.+..|-..|+....+.+.+++.++..... | .-+.+....|
T Consensus 80 ~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~-~---~~~~~~~~~a 155 (184)
T PRK01184 80 DEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDEREL-S---WGIGEVIALA 155 (184)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHh-c---cCHHHHHHhc
Confidence 4678999973321 23334444 899999999987766544432111345566665553321 1 1133455789
Q ss_pred eEEEeCCCCC
Q 006782 234 HIKIINKFNP 243 (631)
Q Consensus 234 DiII~N~~~p 243 (631)
|++|.|+.++
T Consensus 156 d~vI~N~~~~ 165 (184)
T PRK01184 156 DYMIVNDSTL 165 (184)
T ss_pred CEEEeCCCCH
Confidence 9999987654
No 444
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.41 E-value=4.8e-08 Score=97.51 Aligned_cols=112 Identities=16% Similarity=0.083 Sum_probs=70.9
Q ss_pred EEEEECCCCCcHHHHHHHHH----HhC-CCceEEEECCc----cccccccccccCCCC-----CCchhhHHHHHHHhhcc
Q 006782 68 LVGVAGPSGAGKTVFTEKVL----NFM-PSIAVITMDNY----NDSSRIIDGNFDDPR-----LTDYDTLLENIRGLKEG 133 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~----~ll-p~~G~I~lDg~----~~~~~~i~~vfq~p~-----l~d~~tl~e~L~~L~~g 133 (631)
+++|+||||||||||+++|. |.. |+.+.+..+.. ......+++.|+++. .....++.+++.....+
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~ 103 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG 103 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence 89999999999999999996 444 44444432211 111235677888762 22333666666433221
Q ss_pred ccccccccccccccccCceeee------ecCccEEEEeechhccccccCCCcEE
Q 006782 134 KAVQVPIYDFKSSSRIGYRTLE------VPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 134 ~~I~~Pvyd~~~~~rs~~~~~~------v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
+ + ...++......++++.++ +..+++++..+.+++.|||+..+|..
T Consensus 104 ~-~-~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~ 155 (204)
T cd03240 104 E-S-NWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE 155 (204)
T ss_pred H-H-HHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHH
Confidence 1 1 111233445566666664 56778888999999999999999973
No 445
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.40 E-value=1.7e-07 Score=97.34 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=93.3
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHH-----HhC------CC-----------ceEEEECCccccc--c
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL-----NFM------PS-----------IAVITMDNYNDSS--R 106 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~-----~ll------p~-----------~G~I~lDg~~~~~--~ 106 (631)
..|+++++.++.|. +++|+|+||||||||++.+. ..+ |. ...|.+|...... +
T Consensus 9 ~nl~~v~~~ip~g~---~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~r 85 (261)
T cd03271 9 NNLKNIDVDIPLGV---LTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPR 85 (261)
T ss_pred hcCCCceeeccCCc---EEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCC
Confidence 45899999999999 99999999999999999663 111 10 1135555542211 0
Q ss_pred ----ccccccC---------------------------CCCCCchhhHHHHHHHhhccc----------ccccc--cccc
Q 006782 107 ----IIDGNFD---------------------------DPRLTDYDTLLENIRGLKEGK----------AVQVP--IYDF 143 (631)
Q Consensus 107 ----~i~~vfq---------------------------~p~l~d~~tl~e~L~~L~~g~----------~I~~P--vyd~ 143 (631)
....+|| +...+..+++.+++.++..-. .+... ..+.
T Consensus 86 s~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~ 165 (261)
T cd03271 86 SNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQ 165 (261)
T ss_pred CcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcC
Confidence 0111222 222233456777765543211 11122 2344
Q ss_pred ccccccCceeeeecCccEEEEe---echhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHH
Q 006782 144 KSSSRIGYRTLEVPSSRIVIIE---GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (631)
Q Consensus 144 ~~~~rs~~~~~~v~~a~VLIvE---Gi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~ 212 (631)
.....++++.+++..++.++-+ +.+++.|||+..+|.. +...+..+.+++.+.|.++--+.|
T Consensus 166 ~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~-------~~~~l~~~L~~l~~~g~tvIiitH 230 (261)
T cd03271 166 PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFH-------DVKKLLEVLQRLVDKGNTVVVIEH 230 (261)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHH-------HHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4556788889999999888886 5777889999999983 444555555655555665433333
No 446
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.40 E-value=6.9e-08 Score=107.10 Aligned_cols=135 Identities=21% Similarity=0.272 Sum_probs=83.1
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------ccccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vf 112 (631)
.++++.+-.+.+++++.|.+.+|+ -+||+|+|||||||++++|.+.. |..- ++|-|.... ..+..++
T Consensus 79 ~sls~s~~g~~l~kd~~~El~~g~---rygLiG~nG~Gkst~L~~i~~~e~P~p~--~~d~y~ls~e~~ps~~~av~~v~ 153 (614)
T KOG0927|consen 79 ESLSLSFHGVELIKDVTLELNRGR---RYGLIGPNGSGKSTFLRAIAGREVPIPE--HIDFYLLSREIEPSEKQAVQAVV 153 (614)
T ss_pred eeeeeccCCceeeeeeeEEecCCc---eEEEEcCCCCcHhHHHHHHhcCCCCCCc--ccchhhhcccCCCchHHHHHHHh
Confidence 455566667889999999999999 59999999999999999999998 5222 222221111 0011111
Q ss_pred ---------------------CCCCCCchhhHHHHHHHh------------hccccccccccccccccccCceeeeecCc
Q 006782 113 ---------------------DDPRLTDYDTLLENIRGL------------KEGKAVQVPIYDFKSSSRIGYRTLEVPSS 159 (631)
Q Consensus 113 ---------------------q~p~l~d~~tl~e~L~~L------------~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a 159 (631)
++...-..+.+.+.+... ..+..-.....+..+...++|+..++..+
T Consensus 154 ~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLA 233 (614)
T KOG0927|consen 154 METDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALA 233 (614)
T ss_pred hhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHH
Confidence 000000011111111111 00100001112333455678888999999
Q ss_pred cEEEEeechhccccccCCCcE
Q 006782 160 RIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 160 ~VLIvEGi~lL~dEl~~~lDl 180 (631)
++++++|.++|+|||+++||+
T Consensus 234 r~Lf~kP~LLLLDEPtnhLDl 254 (614)
T KOG0927|consen 234 RALFQKPDLLLLDEPTNHLDL 254 (614)
T ss_pred HHHhcCCCEEEecCCccCCCH
Confidence 999999999999999999997
No 447
>PRK06762 hypothetical protein; Provisional
Probab=98.38 E-value=2.9e-06 Score=81.11 Aligned_cols=123 Identities=16% Similarity=0.120 Sum_probs=66.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccccccCCCCCCchhhHHHHHHHhhcccccccccccccc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS 145 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~ 145 (631)
|.+|+|.|++||||||+++.|+..++ .+.+.++...... .+...++.+..+....+.+.+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~-~~~~~i~~D~~r~-~l~~~~~~~~~~~~~~~~~~~~~~--------------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG-RGTLLVSQDVVRR-DMLRVKDGPGNLSIDLIEQLVRYG--------------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEecHHHHHH-HhccccCCCCCcCHHHHHHHHHHH---------------
Confidence 46899999999999999999999883 2344444321111 111112223222222222211110
Q ss_pred ccccCceeeeecCccEEEEeechhc------cccccCCC---cEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 006782 146 SSRIGYRTLEVPSSRIVIIEGIYAL------SEKLRPLI---DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISE 216 (631)
Q Consensus 146 ~~rs~~~~~~v~~a~VLIvEGi~lL------~dEl~~~l---DlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~ 216 (631)
+.....+|+++.+.- ..++.... ...||+++|.++++.|...|.. ..+.+.+.+-.+|..
T Consensus 65 ----------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~-~~~~~~~~l~~~~~~ 133 (166)
T PRK06762 65 ----------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK-SHEFGEDDMRRWWNP 133 (166)
T ss_pred ----------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc-cccCCHHHHHHHHhh
Confidence 112345666776421 12233323 3789999999998877776753 234455555555543
No 448
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.35 E-value=3.4e-06 Score=81.59 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp 91 (631)
+++|+|||||||||+++.|+..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 789999999999999999999874
No 449
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.33 E-value=2.8e-06 Score=83.22 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+++|+||||||||||+++|++.+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 79999999999999999999987
No 450
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.33 E-value=3.9e-07 Score=101.31 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=78.8
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCC-CCc-hhhHHHHH
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR-LTD-YDTLLENI 127 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~-l~d-~~tl~e~L 127 (631)
.++++++|-++.+. -|+++||||+|||||++.+.+.+ |..|.+.-..... +.+.-||.. ..+ ..+..+++
T Consensus 404 ~iy~~l~fgid~~s---rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~----~~~y~Qh~~e~ldl~~s~le~~ 476 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDS---RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK----LPRYNQHLAEQLDLDKSSLEFM 476 (614)
T ss_pred hhhhhhhcccCccc---ceeEecCCCCchhhhHHHHhhcccccccccccccccc----chhhhhhhHhhcCcchhHHHHH
Confidence 68999999999999 59999999999999999999999 9888887654321 111112110 000 11122222
Q ss_pred H-------------HhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 128 R-------------GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 128 ~-------------~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
. .+...-......-+....+.+.|++.++.-+...+--+.++++||+++.+|+.
T Consensus 477 ~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~ 543 (614)
T KOG0927|consen 477 MPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIE 543 (614)
T ss_pred HHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCch
Confidence 1 11100001111112222456667777788888888888888899999999973
No 451
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.29 E-value=2.3e-06 Score=81.41 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=75.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc-ccccccccCCCCCCchhhHHHHHHHhhccccccccccccccc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~-~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~ 146 (631)
+|+|.|++||||||+++.|+..+ +...++.|..... ....+. +...+.... .. .|.+.....
T Consensus 2 iI~i~G~~GSGKstia~~la~~l-g~~~~~~~~~~~~~~~~~g~--------~~~~~~~~~---~~-----~~~~~~~~~ 64 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL-SLKLISAGDIFRELAAKMGL--------DLIEFLNYA---EE-----NPEIDKKID 64 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCceecHHHHHHHHHHHcCC--------CHHHHHHHH---hc-----CcHHHHHHH
Confidence 79999999999999999999987 2334444332110 001110 000000000 00 000000000
Q ss_pred cccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcc
Q 006782 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFI 226 (631)
Q Consensus 147 ~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fI 226 (631)
.... ........+|++|.+... .+...+|++|||++|.+++..|...| .|.+.+++..++.+......+.|.
T Consensus 65 ~~i~---~~~~~~~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R----~~~s~~~a~~~~~~~d~~~~~~~~ 136 (171)
T TIGR02173 65 RRIH---EIALKEKNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKR----EGKSLTVARSETIEREESEKRRYL 136 (171)
T ss_pred HHHH---HHHhcCCCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000 001122456778876532 22456889999999988865554443 478888887777655443322222
Q ss_pred cC------CCCCCeEEEeCC
Q 006782 227 EP------DLQTAHIKIINK 240 (631)
Q Consensus 227 eP------~k~~ADiII~N~ 240 (631)
.. ....-|++|+.+
T Consensus 137 ~~~~~~~~~~~~ydl~i~t~ 156 (171)
T TIGR02173 137 KFYGIDIDDLSIYDLVINTS 156 (171)
T ss_pred HHhCCCccccccccEEEECC
Confidence 22 224457777644
No 452
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.27 E-value=3.8e-07 Score=102.02 Aligned_cols=150 Identities=15% Similarity=0.130 Sum_probs=98.8
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC-CceEEEECCccccccccccccCCCCCCchhhHHHHH
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENI 127 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp-~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L 127 (631)
...++++++|.++.|. -+.|+||||||||+|+|.|+++.| ..|.+..-.... ...+-|++|.|..... |+++.+
T Consensus 447 g~~lie~Ls~~V~~g~---~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-~~~lfflPQrPYmt~G-TLRdQv 521 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQ---NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-PKDLFFLPQRPYMTLG-TLRDQV 521 (659)
T ss_pred CceeeeeeeeEecCCC---eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-CCceEEecCCCCcccc-chhhee
Confidence 5568899999999999 699999999999999999999986 667775432211 1234566666653322 444333
Q ss_pred HHh-----------------------hccc------cccc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 128 RGL-----------------------KEGK------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 128 ~~L-----------------------~~g~------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
-.. +-+. ...- -.+||. ...++|+.++++.|+++..+|.++++||-++.
T Consensus 522 IYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~-dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSA 600 (659)
T KOG0060|consen 522 IYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWM-DVLSPGEQQRLAFARLFYHKPKFAILDECTSA 600 (659)
T ss_pred eccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHH-hhcCHHHHHHHHHHHHHhcCCceEEeechhhh
Confidence 211 1010 0110 122332 35678899999999999999999999998877
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~ 214 (631)
+|. + ..-.+-|...+.|.|.-.|-|+.
T Consensus 601 v~~------d----vE~~~Yr~~r~~giT~iSVgHRk 627 (659)
T KOG0060|consen 601 VTE------D----VEGALYRKCREMGITFISVGHRK 627 (659)
T ss_pred ccH------H----HHHHHHHHHHHcCCeEEEeccHH
Confidence 664 2 23344445555688776666654
No 453
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.27 E-value=4.1e-06 Score=82.79 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=81.5
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccccc-----ccccccCCCCCCchhhHHHHHHHhhcccccccc
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR-----IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 139 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~-----~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~P 139 (631)
++.+|.|+||||||||||++.|....|... ..+.-.....+ ...|.| .+-.+.-..+..+..++.-
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~-~~v~~TTR~~r~gE~~G~dY~f--------vs~~~F~~~i~~~~f~e~~ 73 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFL-FSISCTTRAPRPGDEEGKTYFF--------LTIEEFKKGIADGEFLEWA 73 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccc-cccCccCCCCCCCCCCCceeEe--------CCHHHHHHHHHcCCeEEEE
Confidence 356899999999999999999988765321 11111111111 112222 1222333334456666554
Q ss_pred cccccccc-ccCceeeeecCccEEEEeechhccccccCCC-c--EEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006782 140 IYDFKSSS-RIGYRTLEVPSSRIVIIEGIYALSEKLRPLI-D--LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (631)
Q Consensus 140 vyd~~~~~-rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l-D--lkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~ 215 (631)
.|.-.... ....-...+...+++|++-..-....+...+ | +.|||.+|....+..|+.+ +.+.+.+++..++.
T Consensus 74 ~~~g~~YGt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~---R~~~s~e~i~~Rl~ 150 (186)
T PRK14737 74 EVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIH---RGTDSEESIEKRIE 150 (186)
T ss_pred EECCeeecCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHh---cCCCCHHHHHHHHH
Confidence 43322111 1000111234456677663322222222222 3 6899998865545554432 22346666666664
Q ss_pred hccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 216 ETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 216 ~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
.. .+. ......+|.||.|+ +.
T Consensus 151 ~~-~~e-----~~~~~~~D~vI~N~-dl 171 (186)
T PRK14737 151 NG-IIE-----LDEANEFDYKIIND-DL 171 (186)
T ss_pred HH-HHH-----HhhhccCCEEEECc-CH
Confidence 32 222 22357799999987 44
No 454
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.27 E-value=1e-07 Score=95.82 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=30.8
Q ss_pred ecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 46 ~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.++...+++++++ + ++||+|||||||||++++|...+
T Consensus 13 ~~~~~~~l~~~~~-----~---i~~ivGpNGaGKSTll~~i~~~~ 49 (212)
T cd03274 13 SYAGEQVIGPFHK-----S---FSAIVGPNGSGKSNVIDSMLFVF 49 (212)
T ss_pred cCCCCeeeccCCC-----C---eEEEECCCCCCHHHHHHHHHHHh
Confidence 4566678888877 4 89999999999999999998543
No 455
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.26 E-value=2.1e-06 Score=71.18 Aligned_cols=59 Identities=32% Similarity=0.665 Sum_probs=45.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccccccCCCCCCchhhHHHHHHHhhcccccccccccccccc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~ 147 (631)
+|+|.|++||||||+++.|...+.......+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~----------------------------------------------- 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE----------------------------------------------- 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence 478999999999999999998851001111110
Q ss_pred ccCceeeeecCccEEEEeechhccc----cccCCCcEEEEEEc
Q 006782 148 RIGYRTLEVPSSRIVIIEGIYALSE----KLRPLIDLRVSVTG 186 (631)
Q Consensus 148 rs~~~~~~v~~a~VLIvEGi~lL~d----El~~~lDlkIfVda 186 (631)
++|+||.+.+.+ +..+.+|++||+++
T Consensus 34 -------------~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 -------------IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred -------------EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 899999999875 58899999999997
No 456
>PRK04182 cytidylate kinase; Provisional
Probab=98.24 E-value=4.4e-06 Score=80.05 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+|+|+|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999887
No 457
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.23 E-value=4.1e-06 Score=99.65 Aligned_cols=78 Identities=9% Similarity=0.002 Sum_probs=64.4
Q ss_pred EEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCC
Q 006782 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (631)
Q Consensus 161 VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (631)
-+|+||-=+- .-+++..|+|||++++.+.|..||...... ..+.+++.+++.++++-+..+-+.|.+...|.++.++
T Consensus 191 ~~V~eGRDig-TvVfPdA~~KifL~As~e~RA~RR~~e~~~--~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDt 267 (863)
T PRK12269 191 RVVCEGRDLT-TVVFVDADLKCYLDASIEARVARRWAQGTS--RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDT 267 (863)
T ss_pred CEEEECCCCc-cEECCCCCEEEEEECCHHHHHHHHHHhhhc--cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEEC
Confidence 3777775443 356788999999999999999999766542 4689999999999999999999999999999988765
Q ss_pred C
Q 006782 241 F 241 (631)
Q Consensus 241 ~ 241 (631)
.
T Consensus 268 s 268 (863)
T PRK12269 268 S 268 (863)
T ss_pred C
Confidence 4
No 458
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.23 E-value=3.7e-07 Score=99.80 Aligned_cols=122 Identities=15% Similarity=0.138 Sum_probs=83.5
Q ss_pred EEeeceeEeccCCc--cEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHHHHHH
Q 006782 52 VIRACQLLAQKNHG--IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (631)
Q Consensus 52 vL~~Isl~i~~gek--p~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~ 128 (631)
.+.+..|.++.|+- .-+|||+||||-|||||++.|+|.+ |+.|. ..+ .+++|-+|.-..-...++.+.|.
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~------~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EED------LKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-Ccc------ceEeecceeecCCCCCcHHHHHH
Confidence 34455566655431 2399999999999999999999999 88775 111 13444444322222346666664
Q ss_pred Hhhcc--------ccccc-----cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 129 GLKEG--------KAVQV-----PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 129 ~L~~g--------~~I~~-----Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
..... ..+.. +.++.....++||+.++++.+..+.-|+.+-+.||+..+||.
T Consensus 424 ~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDv 488 (591)
T COG1245 424 SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488 (591)
T ss_pred HhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccH
Confidence 43221 11222 346777778899999999999999999999999999998886
No 459
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.21 E-value=3.1e-06 Score=81.88 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=30.6
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC--CCceEEEECCc
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNY 101 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll--p~~G~I~lDg~ 101 (631)
++.+|.|.|++||||||+++.|...+ +..+.+.+|+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d 44 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD 44 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH
Confidence 45599999999999999999999987 45567777654
No 460
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.19 E-value=5.4e-06 Score=80.07 Aligned_cols=24 Identities=38% Similarity=0.731 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp 91 (631)
+|+|+|||||||||+++.|++.++
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCc
Confidence 899999999999999999999874
No 461
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.17 E-value=8.3e-07 Score=98.58 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=43.1
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCce-EEEECCccc
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYND 103 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G-~I~lDg~~~ 103 (631)
...||++|++.+++|+ +|+|+||||||||||++ .+.. |+.| .|.+||...
T Consensus 18 l~~vL~~Vsl~i~~GE---iv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 18 LERILVKFNKELPSSS---LLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred HHHHHhCCceeecCCC---EEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence 4457999999999999 99999999999999999 4555 7666 799999754
No 462
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.15 E-value=7.7e-06 Score=80.72 Aligned_cols=24 Identities=42% Similarity=0.754 Sum_probs=22.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp 91 (631)
+|+|+||||||||||+++|++.++
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 899999999999999999999874
No 463
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=98.14 E-value=9.7e-06 Score=80.17 Aligned_cols=170 Identities=17% Similarity=0.285 Sum_probs=117.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC----CCceEEEECCccccc-------------cccccccCCCCCCchhhHHHHHH
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDSS-------------RIIDGNFDDPRLTDYDTLLENIR 128 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll----p~~G~I~lDg~~~~~-------------~~i~~vfq~p~l~d~~tl~e~L~ 128 (631)
..+|+|.|.||||-||..-+.-..+ -....|.-|.++... +...+.+-.|.+.++..+.+.++
T Consensus 5 hPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f~ 84 (289)
T COG3954 5 HPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFI 84 (289)
T ss_pred CceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHHH
Confidence 3589999999999999766555443 234455555554321 11222333466777778888877
Q ss_pred Hhhcccccccc----------ccccccccccCceeeeecCccEEEEeechhcc--c--cccCCCcEEEEEEcChhhHHHH
Q 006782 129 GLKEGKAVQVP----------IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS--E--KLRPLIDLRVSVTGGVHFDLVK 194 (631)
Q Consensus 129 ~L~~g~~I~~P----------vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~--d--El~~~lDlkIfVdad~d~rLiR 194 (631)
...+...-... .|....+....++.. -.+.+++..||.+... + .+...+|++|-|..-..+.++.
T Consensus 85 eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~l-pe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWIQ 163 (289)
T COG3954 85 EYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQPL-PEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWIQ 163 (289)
T ss_pred HhcccCCcchhhhhhchhhcCccCCCCCCCCCcccC-CCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHHH
Confidence 65442211111 133333444443332 2457899999988764 2 5778999999999889999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEE
Q 006782 195 RVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (631)
Q Consensus 195 RI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII 237 (631)
++.||..+||.+.|.|.+.+.+ .+++|-.||.|.....||-.
T Consensus 164 K~~RDt~~RGhSrEAVmDsivR-sMdDYinyItPQFSrThINF 205 (289)
T COG3954 164 KLIRDTSERGHSREAVMDSVVR-SMDDYINYITPQFSRTHINF 205 (289)
T ss_pred HHHhcccccCccHHHHHHHHHH-hhhhHHhhcCccccccccce
Confidence 9999999999999999998854 47899999999998888754
No 464
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=2e-06 Score=93.55 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=80.3
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC---C-CceEEEE------CCcccc------
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P-SIAVITM------DNYNDS------ 104 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll---p-~~G~I~l------Dg~~~~------ 104 (631)
+.|+..-.....+.+.++.|-.|. -+|++||||-|||||++.|+..- | ...++.. |....-
T Consensus 268 EnF~ISA~Gk~LFvnA~L~Iv~GR---RYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~a 344 (807)
T KOG0066|consen 268 ENFDISAQGKLLFVNASLTIVYGR---RYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKA 344 (807)
T ss_pred eeeeeecccceeeeccceEEEecc---eecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHh
Confidence 344444455677899999999998 59999999999999999998763 3 3333322 221000
Q ss_pred c-cccc---------cccCCCCCCchhhHHHHHHHhhc---------------cccccccccccccccccCceeeeecCc
Q 006782 105 S-RIID---------GNFDDPRLTDYDTLLENIRGLKE---------------GKAVQVPIYDFKSSSRIGYRTLEVPSS 159 (631)
Q Consensus 105 ~-~~i~---------~vfq~p~l~d~~tl~e~L~~L~~---------------g~~I~~Pvyd~~~~~rs~~~~~~v~~a 159 (631)
. ++.. ..+..-.......+.+....|+. |-......-+.-+...+++.+.++..+
T Consensus 345 D~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLA 424 (807)
T KOG0066|consen 345 DKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLA 424 (807)
T ss_pred hHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHH
Confidence 0 0000 00110010001111111122221 110111111222334568889999999
Q ss_pred cEEEEeechhccccccCCCcEE
Q 006782 160 RIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 160 ~VLIvEGi~lL~dEl~~~lDlk 181 (631)
+.+.+|+.++++||+++.+|+-
T Consensus 425 RALflEPTLLMLDEPTNHLDLN 446 (807)
T KOG0066|consen 425 RALFLEPTLLMLDEPTNHLDLN 446 (807)
T ss_pred HHHhcCceeeeecCCccccccc
Confidence 9999999999999999999973
No 465
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.13 E-value=1.2e-06 Score=94.93 Aligned_cols=149 Identities=16% Similarity=0.111 Sum_probs=88.2
Q ss_pred ecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC---------CCceEEEECCccccccccccccCCC-
Q 006782 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---------PSIAVITMDNYNDSSRIIDGNFDDP- 115 (631)
Q Consensus 46 ~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll---------p~~G~I~lDg~~~~~~~i~~vfq~p- 115 (631)
..+...++++++|.+.+|+ +++|+|+|||||||++++|+|.. |++|.|.+--... -..++...
T Consensus 392 r~ieryvlr~vNL~ikpGd---vvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~----~a~iPge~E 464 (593)
T COG2401 392 RVIERYVLRNLNLEIKPGD---VVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV----SALIPGEYE 464 (593)
T ss_pred eeeeeeeeeceeeEecCCC---eEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch----hhccCcccc
Confidence 3456679999999999999 99999999999999999999974 3455554422111 01122111
Q ss_pred CCCchhhHHHHHHHhhcc-----------ccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEE
Q 006782 116 RLTDYDTLLENIRGLKEG-----------KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~g-----------~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfV 184 (631)
..|+..++.+++..-... .--..-.|.....+.+.++..+...++.+---+.+++.||+.+++|..
T Consensus 465 p~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~--- 541 (593)
T COG2401 465 PEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDEL--- 541 (593)
T ss_pred cccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHH---
Confidence 123344555555321100 000111233334456667777777776655555777779999988874
Q ss_pred EcChhhHHHHHHHHHHHHhCCCH
Q 006782 185 TGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 185 dad~d~rLiRRI~RDv~erG~s~ 207 (631)
...+..|.+.+-..+.|.|+
T Consensus 542 ---TA~rVArkiselaRe~giTl 561 (593)
T COG2401 542 ---TAVRVARKISELAREAGITL 561 (593)
T ss_pred ---HHHHHHHHHHHHHHHhCCeE
Confidence 33444555444444445553
No 466
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.13 E-value=7.4e-07 Score=88.84 Aligned_cols=68 Identities=9% Similarity=0.114 Sum_probs=46.8
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccccccCCCCCCchhhHHHHHHH
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRG 129 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~ 129 (631)
.|++++++.. |+ +++|+||||||||||++.|++.. .+...|.+.+.. .++||...+|...++.+++..
T Consensus 15 ~v~n~i~l~~--g~---~~~ltGpNg~GKSTllr~i~~~~----~l~~~G~~v~a~--~~~~q~~~l~~~~~~~d~l~~ 82 (199)
T cd03283 15 RVANDIDMEK--KN---GILITGSNMSGKSTFLRTIGVNV----ILAQAGAPVCAS--SFELPPVKIFTSIRVSDDLRD 82 (199)
T ss_pred eecceEEEcC--Cc---EEEEECCCCCChHHHHHHHHHHH----HHHHcCCEEecC--ccCcccceEEEeccchhcccc
Confidence 4677877765 45 89999999999999999998864 122234333222 356665567777777777654
No 467
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.09 E-value=8.1e-06 Score=78.89 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=58.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc--------ccccccccCCCCCCchhhHHHHHHHhhccccccc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV 138 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~--------~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~ 138 (631)
.+|+|+|++||||||+++.|+..+ +.-.+..++.... .+.+...++...+.+..++.+++......
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~-g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 77 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY-GFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVA----- 77 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----
Confidence 489999999999999999999765 2223333321100 01122233333344444444443321100
Q ss_pred cccccccccccCceeeeecCccEEEEeechhcc------ccccCCCcEEEEEEcChhhHHHHHHHH
Q 006782 139 PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS------EKLRPLIDLRVSVTGGVHFDLVKRVFR 198 (631)
Q Consensus 139 Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~------dEl~~~lDlkIfVdad~d~rLiRRI~R 198 (631)
.+.....+|++|..--. ..-....|..||++++.+....|...|
T Consensus 78 ----------------~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R 127 (188)
T TIGR01360 78 ----------------ALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKR 127 (188)
T ss_pred ----------------ccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcc
Confidence 01223456777753211 111235789999999987755544444
No 468
>PRK04040 adenylate kinase; Provisional
Probab=98.06 E-value=5.3e-06 Score=82.12 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=29.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCC-CceEEEECCc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNY 101 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp-~~G~I~lDg~ 101 (631)
+.+|+|+|++||||||+++.|+..++ +...++++++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 46899999999999999999999985 5556666654
No 469
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.03 E-value=4.2e-05 Score=75.10 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=37.3
Q ss_pred eceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCc
Q 006782 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (631)
Q Consensus 55 ~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~ 101 (631)
-+.+.+..|+ .++|+||+||||||++++|.+++ ++.+.|.+++.
T Consensus 17 ~l~~~v~~g~---~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 17 YLWLAVEARK---NILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 3445667777 89999999999999999999998 77888888775
No 470
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=97.97 E-value=2.2e-06 Score=95.16 Aligned_cols=146 Identities=15% Similarity=0.202 Sum_probs=93.0
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC-CceEEEECCccccccccccccCCCCCCchhhHHHH
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp-~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~ 126 (631)
....++..++|.+++|. -+.|+||||||||+|.|.|.|+.| ..|.+++- .+..+-|++|.|..- .-++++.
T Consensus 493 ~~~vvv~~Ltf~i~~G~---hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P----~~~~mFYIPQRPYms-~gtlRDQ 564 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPGM---HLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP----RPNNIFYIPQRPYMS-GGTLRDQ 564 (728)
T ss_pred CcceeecceeEEecCCc---eEEEECCCCccHHHHHHHHhccCcccCCeeecC----CCcceEeccCCCccC-cCcccce
Confidence 34458899999999998 699999999999999999999986 44554432 222355566655421 1111111
Q ss_pred H----------------------------HHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCC
Q 006782 127 I----------------------------RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 127 L----------------------------~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
+ ..+.....-.--+.||. ...++|++++++.++++.-.+.|+++||-++..
T Consensus 565 IIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWk-d~LsgGekQR~~mARm~yHrPkyalLDEcTsAv 643 (728)
T KOG0064|consen 565 IIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWK-DVLSGGEKQRMGMARMFYHRPKYALLDECTSAV 643 (728)
T ss_pred eecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHH-hhccchHHHHHHHHHHHhcCcchhhhhhhhccc
Confidence 1 01111111111123333 346788999999999999999999999976644
Q ss_pred cEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHH
Q 006782 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (631)
Q Consensus 179 DlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~ 212 (631)
-+ | ..-++....+..|.+.-.|.|
T Consensus 644 si----d------vE~~i~~~ak~~gi~llsith 667 (728)
T KOG0064|consen 644 SI----D------VEGKIFQAAKDAGISLLSITH 667 (728)
T ss_pred cc----c------hHHHHHHHHHhcCceEEEeec
Confidence 33 2 344566666667877655544
No 471
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=3.2e-06 Score=91.98 Aligned_cols=132 Identities=13% Similarity=0.160 Sum_probs=82.5
Q ss_pred eeEeec-CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCC--C
Q 006782 42 TLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR--L 117 (631)
Q Consensus 42 ~ls~~~-g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~--l 117 (631)
.+.|.+ |..+.+..++|-+.-.. -|+|+||||.|||||+++|.|.+ |..|...-+. ...+|+.-||.+ +
T Consensus 591 ~VtFgy~gqkpLFkkldFGiDmdS---RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh----rL~iG~FdQh~~E~L 663 (807)
T KOG0066|consen 591 DVTFGYPGQKPLFKKLDFGIDMDS---RIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH----RLRIGWFDQHANEAL 663 (807)
T ss_pred cccccCCCCCchhhcccccccccc---eeEEECCCCccHHHHHHHHhcCCCCCcchhhccc----eeeeechhhhhHHhh
Confidence 344555 56678889999888777 59999999999999999999999 8766554321 113444333321 2
Q ss_pred CchhhHHHHHHHhhcccc--c--ccccc-------ccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 118 TDYDTLLENIRGLKEGKA--V--QVPIY-------DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 118 ~d~~tl~e~L~~L~~g~~--I--~~Pvy-------d~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
....+-.+.|...-+-.. . ..-.| .......++++..++..+.+.+-++.++++||+++.+|+
T Consensus 664 ~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDI 737 (807)
T KOG0066|consen 664 NGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDI 737 (807)
T ss_pred ccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcch
Confidence 222333444432211000 0 00001 111234677888888887777777888888999999998
No 472
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.95 E-value=7.9e-06 Score=98.23 Aligned_cols=66 Identities=9% Similarity=0.088 Sum_probs=47.7
Q ss_pred ccccccccCceeeeecCccEEEEee---chhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 006782 142 DFKSSSRIGYRTLEVPSSRIVIIEG---IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (631)
Q Consensus 142 d~~~~~rs~~~~~~v~~a~VLIvEG---i~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~ 214 (631)
+......++|+.+++..++.++.++ .+++.|||+..+|.. +.+.+..+.+.+.+.|.++--+.|..
T Consensus 825 ~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~-------~~~~L~~~L~~l~~~G~TVIiitH~~ 893 (943)
T PRK00349 825 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFE-------DIRKLLEVLHRLVDKGNTVVVIEHNL 893 (943)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHH-------HHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4445667888999999999999887 788889999999983 45555566666666676654444433
No 473
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.93 E-value=3.7e-06 Score=86.24 Aligned_cols=34 Identities=15% Similarity=0.381 Sum_probs=27.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC-CC-ceEEEECCc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNY 101 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll-p~-~G~I~lDg~ 101 (631)
+++|+|||||||||++++|...+ +. .+.+...+.
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~ 62 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICFVLGITNLSTVRASNL 62 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccccccccCH
Confidence 79999999999999999999998 43 345655543
No 474
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.87 E-value=1.7e-05 Score=78.96 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=69.3
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEE----EECCcc---ccccccccccCCCCCCchhh--
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI----TMDNYN---DSSRIIDGNFDDPRLTDYDT-- 122 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I----~lDg~~---~~~~~i~~vfq~p~l~d~~t-- 122 (631)
++++++...+| +.+|+|+||||||||+.+|.-.+ +..... .++.+. .....+.+.|++...++...
T Consensus 12 ~~~~~l~f~~g----l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (198)
T cd03276 12 HRHLQIEFGPR----VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCV 87 (198)
T ss_pred eeeeEEecCCC----eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCH
Confidence 45666666554 68999999999999999998665 221100 001110 01123455666544443110
Q ss_pred H-HHHHHHhhccccccccccccccccccCceeeeecCccEE----EEeechhccccccCCCcE
Q 006782 123 L-LENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIV----IIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 123 l-~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VL----IvEGi~lL~dEl~~~lDl 180 (631)
. .+.+..+... ....+...+..++++.+++..+.++ +.++.+++.||++..+|.
T Consensus 88 ~~~~~~~~~l~~----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~ 146 (198)
T cd03276 88 LSQDMARSFLTS----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDM 146 (198)
T ss_pred HHHHHHHHHhcc----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCH
Confidence 1 1223222221 1122333455667777777777766 578899999999999997
No 475
>PRK08356 hypothetical protein; Provisional
Probab=97.86 E-value=2e-05 Score=77.92 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=26.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
..+|+|+||+||||||+++.|.. . +...|++.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~-g~~~is~~~~ 38 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-K-GFCRVSCSDP 38 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-C-CCcEEeCCCc
Confidence 35799999999999999999965 4 3446766653
No 476
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.84 E-value=9.7e-05 Score=73.02 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=76.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccccc-----ccccccCCCCCCchhhHHHHHHHhhcccccccccc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR-----IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~-----~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvy 141 (631)
.++.|.||||+||||++++|.... .-.+++-.....++ .+.|.| .+-.+....+..++.+++..|
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~F--------vs~~EF~~~i~~~~fLE~a~~ 74 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFF--------VTEEEFEELIERDEFLEWAEY 74 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEe--------CCHHHHHHHHhcCCcEEEEEE
Confidence 489999999999999999998875 22233322222111 122222 344444445555555555433
Q ss_pred cccc-ccccC--ceeeeecCccEEEEeechhccccccCCC-c-EEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 006782 142 DFKS-SSRIG--YRTLEVPSSRIVIIEGIYALSEKLRPLI-D-LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISE 216 (631)
Q Consensus 142 d~~~-~~rs~--~~~~~v~~a~VLIvEGi~lL~dEl~~~l-D-lkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~ 216 (631)
.-.- +.... .+....+..-++-+|..-++ .++..+ | ..||+.+|.-..|.+|+.+ ||..-+++++.-+.
T Consensus 75 ~gnyYGT~~~~ve~~~~~G~~vildId~qGa~--qvk~~~p~~v~IFi~pPs~eeL~~RL~~----Rgtds~e~I~~Rl~ 148 (191)
T COG0194 75 HGNYYGTSREPVEQALAEGKDVILDIDVQGAL--QVKKKMPNAVSIFILPPSLEELERRLKG----RGTDSEEVIARRLE 148 (191)
T ss_pred cCCcccCcHHHHHHHHhcCCeEEEEEehHHHH--HHHHhCCCeEEEEEcCCCHHHHHHHHHc----cCCCCHHHHHHHHH
Confidence 2211 11100 01111122223344433333 222222 3 6789999988877777655 57655555444333
Q ss_pred ccccchhhcccCCCCCCeEEEeCC
Q 006782 217 TVYPMYKAFIEPDLQTAHIKIINK 240 (631)
Q Consensus 217 ~v~P~~~~fIeP~k~~ADiII~N~ 240 (631)
..+.....+ ..-|.+|.|+
T Consensus 149 ~a~~Ei~~~-----~~fdyvivNd 167 (191)
T COG0194 149 NAKKEISHA-----DEFDYVIVND 167 (191)
T ss_pred HHHHHHHHH-----HhCCEEEECc
Confidence 322222211 2248888765
No 477
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.84 E-value=2.9e-05 Score=76.97 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=32.6
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC--CCceEEEECCcc
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYN 102 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll--p~~G~I~lDg~~ 102 (631)
.++.+|+|+|++||||||+++.|.+.+ .+.|.+.+|+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~ 62 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDN 62 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEe
Confidence 445699999999999999999999987 356788888754
No 478
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.83 E-value=2e-05 Score=95.50 Aligned_cols=129 Identities=14% Similarity=0.091 Sum_probs=100.7
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC----CceEEEECCcccc----ccccccccCCCCCCch
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp----~~G~I~lDg~~~~----~~~i~~vfq~p~l~d~ 120 (631)
.+.++++++..+++|+ ++-+.||.|||||||+++|++.+. ..|.|+.||+... ++.+.|+.|+...++.
T Consensus 127 ~~~il~~~sg~~~pg~---m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGE---MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE 203 (1391)
T ss_pred cceeecCcceeEcCCc---eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccce
Confidence 4578999999999999 899999999999999999999872 4679999998533 3567899998888999
Q ss_pred hhHHHHHHHhhccccc-----cccc--cc--------------cc----c-----ccccCceeeeecCccEEEEeechhc
Q 006782 121 DTLLENIRGLKEGKAV-----QVPI--YD--------------FK----S-----SSRIGYRTLEVPSSRIVIIEGIYAL 170 (631)
Q Consensus 121 ~tl~e~L~~L~~g~~I-----~~Pv--yd--------------~~----~-----~~rs~~~~~~v~~a~VLIvEGi~lL 170 (631)
+|+++.|.+....+.. +.+. +. +. . ...+||++.++..+..++-.+...+
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~ 283 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF 283 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence 9999998775543221 1111 10 00 0 1245788999999999999999999
Q ss_pred cccccCCCcE
Q 006782 171 SEKLRPLIDL 180 (631)
Q Consensus 171 ~dEl~~~lDl 180 (631)
-|+++..||-
T Consensus 284 ~De~t~GLDS 293 (1391)
T KOG0065|consen 284 WDEITRGLDS 293 (1391)
T ss_pred eecccccccH
Confidence 9999999995
No 479
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.80 E-value=3.2e-05 Score=75.29 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=26.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
.|.|+|++||||||+++.|++.+ +...+..|.
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l-~~~~vd~D~ 37 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQ 37 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc-CCcEEECCc
Confidence 69999999999999999999987 444555554
No 480
>PRK13949 shikimate kinase; Provisional
Probab=97.73 E-value=1.8e-05 Score=76.89 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=27.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
-|.|+|++||||||+++.|+..+ +...+..|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l-~~~~id~D~~ 35 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL-GLSFIDLDFF 35 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCCeecccHH
Confidence 48999999999999999999998 4455666643
No 481
>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.
Probab=97.71 E-value=0.00014 Score=69.44 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=65.5
Q ss_pred cceeeeeecCCEEEEEEeeeecCCCeeecceeEeeeehhhHHHHhhcCCeEEEEEEeeeeEeec-CcEEEEeecccccCc
Q 006782 296 QSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYD-DRVCVKTDWLEQLNR 374 (631)
Q Consensus 296 de~LRvR~~dg~~~LtykG~~~d~p~isrp~~ef~V~v~il~GL~~LGy~~~a~v~k~re~y~~-~~~~i~lD~ve~Lg~ 374 (631)
+.++|+|..++.+.|||||+. .++|.+.+++|+.....-|+. +..+..|+|.|.+|.. ++.++++|.++|++.
T Consensus 32 ~~~vRvR~~~~~~~lT~K~~~----~~~R~E~E~~I~~~~~~~ll~--~~~~~~I~K~R~~~~~~~~~~~~vD~~~g~~~ 105 (146)
T cd07761 32 NPEVRIRSKGEKYILTVKSGG----GLVREEIEIEIDKKEFEHLLE--KTEGNLIEKTRYLIPLEGGLLAELDVFEGRLT 105 (146)
T ss_pred CcEEEEEEECCEEEEEEEcCC----CcceEEEEEeCCHHHHHHHHH--hCCCCeEEEEEEEEEeCCCcEEEEEEEcCCCC
Confidence 468999999999999999986 356777777777554444444 7888899999999999 999999999999864
Q ss_pred --ceEEEEecc
Q 006782 375 --KYVQVQGRD 383 (631)
Q Consensus 375 --~FveI~g~~ 383 (631)
.|+||+-.+
T Consensus 106 gL~~~EvE~~s 116 (146)
T cd07761 106 GLVYAEVEFPS 116 (146)
T ss_pred CeEEEEEEcCC
Confidence 467776554
No 482
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=2.6e-05 Score=86.67 Aligned_cols=128 Identities=10% Similarity=0.006 Sum_probs=92.9
Q ss_pred ecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchh--h
Q 006782 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYD--T 122 (631)
Q Consensus 46 ~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~--t 122 (631)
..+.+..+.++++.++...+ |+++|+||+||||+++++.+.+ |..|.+.... +.++++.+||..-+-.. .
T Consensus 373 ~p~~y~~~~~~~~d~e~~sR---i~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~----r~ri~~f~Qhhvd~l~~~v~ 445 (582)
T KOG0062|consen 373 TPSEYQWRKQLGLDRESDSR---ISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP----RLRIKYFAQHHVDFLDKNVN 445 (582)
T ss_pred CCcchhhhhccCCccchhhh---hheeccCchhHHHHHHHHhccCCcccceeeecc----cceecchhHhhhhHHHHHhH
Confidence 33343578899998888884 9999999999999999999988 8888887654 34677888875433211 1
Q ss_pred HHHHHHHhhcccc------------ccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 123 LLENIRGLKEGKA------------VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 123 l~e~L~~L~~g~~------------I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
..+.+.....|.. +.-+.-.......+||++.++..+......|.++++|||+++||.
T Consensus 446 ~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ 515 (582)
T KOG0062|consen 446 AVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDR 515 (582)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccH
Confidence 2333333443331 222333344556889999999999999999999999999999997
No 483
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.66 E-value=2.3e-05 Score=86.14 Aligned_cols=165 Identities=17% Similarity=0.202 Sum_probs=94.7
Q ss_pred CceeeeeccceeEeecCceeEEeec---eeEec-cCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEE----ECCcc
Q 006782 32 DRYEIVPIEDTLSFEKGFFIVIRAC---QLLAQ-KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT----MDNYN 102 (631)
Q Consensus 32 ~~~ei~~v~~~ls~~~g~~~vL~~I---sl~i~-~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~----lDg~~ 102 (631)
+.+.++++++.+..+--++.-.++. .+-++ +|. ++||+|+||-||||.++.|+|.+ |.-|.-. +|..-
T Consensus 65 ~AI~IvnLP~eLe~e~vHRYg~NgFkL~~LP~pr~G~---V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi 141 (591)
T COG1245 65 DAISIVNLPEELEEEVVHRYGVNGFKLYRLPTPRPGK---VVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVI 141 (591)
T ss_pred ceEEEecCchhhcccceeeccCCceEEecCCCCCCCc---EEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHH
Confidence 5677777776654321111112222 23333 344 99999999999999999999998 7544321 11100
Q ss_pred c----cc----------------cccccccCCCCCCchhhHHHHHHHhhcccc-------c-cccccccccccccCceee
Q 006782 103 D----SS----------------RIIDGNFDDPRLTDYDTLLENIRGLKEGKA-------V-QVPIYDFKSSSRIGYRTL 154 (631)
Q Consensus 103 ~----~~----------------~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~-------I-~~Pvyd~~~~~rs~~~~~ 154 (631)
. +. .++.|+---|..+.. ++.+.|...-+... . .-.+++...++.+||+-+
T Consensus 142 ~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG-~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQ 220 (591)
T COG1245 142 KRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKG-KVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQ 220 (591)
T ss_pred HHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhcc-hHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHH
Confidence 0 00 011111111222221 34444443322110 1 124577778889999999
Q ss_pred eecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 155 EVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 155 ~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
+++.+.++.-++.+.+.||+.+.||++ .-+. .-|+.|++.+.+..+
T Consensus 221 r~aIaa~l~rdADvY~FDEpsSyLDi~------qRl~-~ar~Irel~~~~k~V 266 (591)
T COG1245 221 RVAIAAALLRDADVYFFDEPSSYLDIR------QRLN-AARVIRELAEDGKYV 266 (591)
T ss_pred HHHHHHHHhccCCEEEEcCCcccccHH------HHHH-HHHHHHHHhccCCeE
Confidence 999999999999999999999999985 1111 335566665545443
No 484
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.66 E-value=1.1e-05 Score=72.45 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHhC
Q 006782 69 VGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 69 IGI~GpsGSGKSTLlr~L~~ll 90 (631)
|+|.|++||||||+++.|...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999985
No 485
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.63 E-value=0.00041 Score=77.10 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=111.6
Q ss_pred eccceeEeec-CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccc-c---c-----c
Q 006782 38 PIEDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-S---S-----R 106 (631)
Q Consensus 38 ~v~~~ls~~~-g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~-~---~-----~ 106 (631)
...++++... .....+++|||.+..|+ |+||+|-.|-|-+.|+.+|+|+. +..|.|.++|.+. . . .
T Consensus 258 L~V~~L~v~~~~~~~~v~~vs~~Vr~GE---IvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 258 LEVEDLSVKDRRGVTAVKDVSFEVRAGE---IVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEeeeEeecCCCCceeeeeeeEEecCc---EEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 3334444332 23567999999999999 99999999999999999999998 7779999999864 1 1 3
Q ss_pred ccccccCCC---CCCchhhHHHHHHHhhc-------------------------cccccccccccccccccCceeeeecC
Q 006782 107 IIDGNFDDP---RLTDYDTLLENIRGLKE-------------------------GKAVQVPIYDFKSSSRIGYRTLEVPS 158 (631)
Q Consensus 107 ~i~~vfq~p---~l~d~~tl~e~L~~L~~-------------------------g~~I~~Pvyd~~~~~rs~~~~~~v~~ 158 (631)
.+++++++. .+...+++.+|+..-.. .-+|..|.-+-.....+||..+++-.
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Il 414 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLIL 414 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhh
Confidence 467777754 45555677777642211 11222222222234577888888877
Q ss_pred ccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCC
Q 006782 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (631)
Q Consensus 159 a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~ 205 (631)
++=+.-++.+++...|+..+|+ ....++++..++.+++|.
T Consensus 415 aREl~~~p~lLI~~qPTrGLDv-------gA~~~I~~~l~e~r~~G~ 454 (501)
T COG3845 415 ARELARRPDLLIAAQPTRGLDV-------GAIEFIHERLLELRDAGK 454 (501)
T ss_pred hhhhccCCCEEEEcCCCccccH-------HHHHHHHHHHHHHHhcCC
Confidence 8878888888888899999998 355667777777777774
No 486
>PRK03839 putative kinase; Provisional
Probab=97.59 E-value=0.00036 Score=67.69 Aligned_cols=34 Identities=15% Similarity=0.472 Sum_probs=27.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~ 102 (631)
.|.|+|++||||||+++.|+..+ +.-.+++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~-~~~~id~d~~~ 35 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL-GYEYVDLTEFA 35 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEehhhhh
Confidence 58899999999999999999987 34456666543
No 487
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=97.58 E-value=5.4e-05 Score=75.99 Aligned_cols=50 Identities=16% Similarity=0.050 Sum_probs=42.4
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCc
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~ 101 (631)
..+++-++|+.++.|.+ ..++|.||||||||+++|+|-. -..|.|.+.|.
T Consensus 26 ~dP~~~Dfnldlp~gsR---cLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgr 76 (291)
T KOG2355|consen 26 SDPIFFDFNLDLPAGSR---CLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGR 76 (291)
T ss_pred CCceEEEEeeccCCCce---EEEEecCCCchhhhHHHhcCcccccCCeEEEcCc
Confidence 33789999999999995 7788999999999999999986 44588888775
No 488
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.00011 Score=73.94 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=38.4
Q ss_pred CCcEEEEEEcChhhHHHHHHHHHHHHhCCCHH-HHH---HHHHhccccchhhcccCCCCCCeEEE
Q 006782 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE-EII---HQISETVYPMYKAFIEPDLQTAHIKI 237 (631)
Q Consensus 177 ~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e-~Vi---~q~~~~v~P~~~~fIeP~k~~ADiII 237 (631)
.-|+.||++++.++ +.+| +..||++.| ... ..|.+.....|..|++-.-..-++.|
T Consensus 126 ~PdllIyLd~~~e~-~l~R----I~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i 185 (216)
T COG1428 126 RPDLLIYLDASLET-LLRR----IAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGI 185 (216)
T ss_pred CCCEEEEEeCCHHH-HHHH----HHHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeee
Confidence 66899999999776 3444 455699887 222 34667777777777776655556666
No 489
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.55 E-value=0.00049 Score=65.52 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=25.3
Q ss_pred EEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 69 VGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 69 IGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
|.|+|++||||||+++.|++.+ +.-.|..|++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l-~~~~v~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL-GAKFIEGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc-CCeEEeCccc
Confidence 4689999999999999999998 3344555554
No 490
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.52 E-value=4.1e-05 Score=78.49 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=24.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC-CCceEE
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVI 96 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I 96 (631)
+++|+||||||||||+.+|...+ +..+.+
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~ 53 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHL 53 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccc
Confidence 89999999999999999999988 444444
No 491
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.51 E-value=0.00016 Score=70.85 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=38.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc------cccccccCCCCCCchhhHHHHH
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENI 127 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~------~~i~~vfq~p~l~d~~tl~e~L 127 (631)
+++|+|+|||||||++++|++.+.. +.+++..... ...++.+++...+++.+...++
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~---~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~ 67 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA---KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDA 67 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC---EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHH
Confidence 8999999999999999999999821 4556643221 1235566665555555555444
No 492
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.50 E-value=0.00011 Score=92.78 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=48.6
Q ss_pred ccccccccCceeeeecCccEEE---EeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 006782 142 DFKSSSRIGYRTLEVPSSRIVI---IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (631)
Q Consensus 142 d~~~~~rs~~~~~~v~~a~VLI---vEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~ 214 (631)
+....+.++|+.+++..+++++ .++.+++.|||+..+|. .+.+.+..+.+.+.+.|.++--+.|..
T Consensus 804 ~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~-------~~~~~Ll~lL~~L~~~G~TVIiIsHdl 872 (1809)
T PRK00635 804 GRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHT-------HDIKALIYVLQSLTHQGHTVVIIEHNM 872 (1809)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCH-------HHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3444567888999999999986 58889999999999998 355556666666666687754444444
No 493
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.50 E-value=0.00078 Score=65.98 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=77.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCC-ceEEEECCccccccccccccCCCCCCchhhHHHHHHHhhcccccccccccccc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPS-IAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS 145 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~-~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~ 145 (631)
.+|.|+||+||||+|+++.|....|. -+.+...-. ... ..+-..... +.+.+-.+.-.....|.-++...|.-..
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~Tt-R~~-r~~e~~g~d--y~fvs~~ef~~~i~~g~fve~~~~~g~~ 78 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTT-RPP-RPGEVNGVD--YHFVSREEFEDDIKSGLFLEWGEYSGNY 78 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecC-CCC-CCCCcCCce--EEECCHHHHHHHHHcCCeEEEEEEcCcC
Confidence 47999999999999999999988742 111111100 011 111111100 1112322223334445555544333211
Q ss_pred c-cccCceeeeecCccEEEEeechhccccccC-CCc-EEEEEEcChhhHHHHHHHHHHHHhCC-CHHHHHHHHHhccccc
Q 006782 146 S-SRIGYRTLEVPSSRIVIIEGIYALSEKLRP-LID-LRVSVTGGVHFDLVKRVFRDIQRVGQ-EPEEIIHQISETVYPM 221 (631)
Q Consensus 146 ~-~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~-~lD-lkIfVdad~d~rLiRRI~RDv~erG~-s~e~Vi~q~~~~v~P~ 221 (631)
. .....-...+...+.+|+++..-....+.. ..+ +.||+.++....+.+|+.. ||. +.+.+..++... .-.
T Consensus 79 YGt~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~----R~~~~~~~i~~rl~~a-~~~ 153 (184)
T smart00072 79 YGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRG----RGTETAERIQKRLAAA-QKE 153 (184)
T ss_pred cccCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHh----cCCCCHHHHHHHHHHH-HHH
Confidence 1 000000111234567777765444333332 234 7899997776656666553 454 556666655432 111
Q ss_pred hhhcccCCCCCCeEEEeCC
Q 006782 222 YKAFIEPDLQTAHIKIINK 240 (631)
Q Consensus 222 ~~~fIeP~k~~ADiII~N~ 240 (631)
.. . ....|.+|.|+
T Consensus 154 ~~---~--~~~fd~~I~n~ 167 (184)
T smart00072 154 AQ---E--YHLFDYVIVND 167 (184)
T ss_pred Hh---h--hccCCEEEECc
Confidence 11 1 14468998875
No 494
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.48 E-value=0.00012 Score=69.59 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=26.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEEC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lD 99 (631)
+..|.|+|++||||||+++.|+..+ +...+..|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l-~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL-GYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh-CCCEEECh
Confidence 3489999999999999999999987 33344444
No 495
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.48 E-value=0.00034 Score=68.30 Aligned_cols=26 Identities=27% Similarity=0.641 Sum_probs=23.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPS 92 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~ 92 (631)
.+|.|+||+|||||||++.|...+|.
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~ 28 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPD 28 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccc
Confidence 37889999999999999999998864
No 496
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.47 E-value=0.00018 Score=79.85 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=55.9
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcc---c-------------ccccccccc
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN---D-------------SSRIIDGNF 112 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~---~-------------~~~~i~~vf 112 (631)
..+++++ |.+.+|+ .+||+|+||+|||||+++|++.. ++.+.+-..+.. . ....+.+++
T Consensus 143 i~aID~l-l~I~~GQ---~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~ 218 (434)
T PRK07196 143 VNAINGL-LTIGKGQ---RVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAP 218 (434)
T ss_pred eeeccce-EeEecce---EEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEec
Confidence 4689999 9999999 79999999999999999999988 665444333321 1 012456788
Q ss_pred CCCCCCchhhHHHHHHH
Q 006782 113 DDPRLTDYDTLLENIRG 129 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~ 129 (631)
++...+...++.+++..
T Consensus 219 ~d~s~~~rl~a~e~a~~ 235 (434)
T PRK07196 219 ADESPLMRIKATELCHA 235 (434)
T ss_pred CCCChhhhHHHHHHHHH
Confidence 88777777666666543
No 497
>PLN02200 adenylate kinase family protein
Probab=97.45 E-value=0.00045 Score=70.80 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=29.3
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
..|.+|.|+|++||||||+++.|+..+ +...|+.++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~-g~~his~gdl 77 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETF-GFKHLSAGDL 77 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh-CCeEEEccHH
Confidence 346799999999999999999999887 3445555543
No 498
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=97.32 E-value=0.00071 Score=65.60 Aligned_cols=99 Identities=9% Similarity=0.005 Sum_probs=72.7
Q ss_pred cceeeeecCCCCCCchhccceeeeee--cCCEEEEEEeeeecCCCeeecceeEeeeehhhH------------HHHhhcC
Q 006782 278 EETYDIYLLPPGEDPDACQSYLRMRN--RDGKYNLMFEEWVTDSPFIISPRITFEVSVRLL------------GGLMALG 343 (631)
Q Consensus 278 ~~f~DIYl~pP~~d~~~tde~LRvR~--~dg~~~LtykG~~~d~p~isrp~~ef~V~v~il------------~GL~~LG 343 (631)
..+.++||..|... ..+..+|+|. .++.+.+|+|++... ..+++.++.|.-... ..+..+|
T Consensus 32 ~~~~~~YfDT~d~~--l~~~~lrlR~r~~~~~~~~TlK~~~~~---~~r~E~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ 106 (174)
T cd07374 32 VQLRAIYFDTPDLR--LARAGLRLRRRTGGADAGWHLKLPGGI---SRRTEVRAPLGDAAAVAPLLLAAALVLAVTRGLP 106 (174)
T ss_pred eeeeeeEecCccch--hhhCCcEEEEEcCCCccEEEEEccCCC---CCceEEEeecCCccCCcccccchhheeeecCCCC
Confidence 34559999888763 3445566665 455999999988764 346666666652111 3456789
Q ss_pred CeEEEEEEeeeeEeecC-----cEEEEeecccc-------cCcceEEEEec
Q 006782 344 YTIATILKRSSHIFYDD-----RVCVKTDWLEQ-------LNRKYVQVQGR 382 (631)
Q Consensus 344 y~~~a~v~k~re~y~~~-----~~~i~lD~ve~-------Lg~~FveI~g~ 382 (631)
+++++.+.+.|..|..+ .+.|++|.++. .+ .|||++-.
T Consensus 107 l~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~~~~~~~-~e~E~El~ 156 (174)
T cd07374 107 LRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVLDGGGTQ-YWREVEVE 156 (174)
T ss_pred ceEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEcCCCcce-EEEEEEEE
Confidence 99999999999999876 59999999998 55 89999443
No 499
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.29 E-value=0.00075 Score=65.62 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=26.4
Q ss_pred EEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 69 VGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 69 IGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
|.|+|++||||||+++.|+..+ +...|.+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~-~~~~i~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY-GLPHISTGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-CCeEEECcHH
Confidence 7899999999999999999987 4455666553
No 500
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.26 E-value=0.00067 Score=65.65 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=27.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
+|.|+|++||||||+++.|+..+ +.-.|++++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~-~~~~is~~d~ 33 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF-GFTHLSAGDL 33 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-CCeEEECChH
Confidence 47899999999999999999987 4456666554
Done!