Query 006782
Match_columns 631
No_of_seqs 540 out of 3186
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqc_A Pantothenate kinase; bi 99.9 1.4E-23 4.7E-28 221.1 15.8 195 46-240 69-308 (321)
2 3tui_C Methionine import ATP-b 99.9 6.4E-25 2.2E-29 234.8 0.1 268 31-337 22-321 (366)
3 1sq5_A Pantothenate kinase; P- 99.9 7.4E-23 2.5E-27 213.4 10.8 191 51-242 49-298 (308)
4 3asz_A Uridine kinase; cytidin 99.9 1.5E-21 5.1E-26 190.1 14.2 176 66-242 6-189 (211)
5 3c8u_A Fructokinase; YP_612366 99.9 1.1E-21 3.9E-26 192.1 12.9 169 67-238 23-206 (208)
6 2jeo_A Uridine-cytidine kinase 99.8 2E-20 6.7E-25 187.9 14.1 190 46-240 8-215 (245)
7 3aez_A Pantothenate kinase; tr 99.8 4.6E-20 1.6E-24 193.4 14.5 177 66-242 90-301 (312)
8 3fvq_A Fe(3+) IONS import ATP- 99.8 9.1E-21 3.1E-25 202.4 3.5 196 41-273 8-231 (359)
9 3rlf_A Maltose/maltodextrin im 99.8 1.5E-20 5E-25 202.2 4.2 202 41-279 7-232 (381)
10 3gfo_A Cobalt import ATP-bindi 99.8 1.2E-19 4.2E-24 187.1 7.8 194 41-271 11-234 (275)
11 3tif_A Uncharacterized ABC tra 99.8 1.1E-19 3.8E-24 182.9 6.7 143 35-180 3-178 (235)
12 1a7j_A Phosphoribulokinase; tr 99.8 7.9E-20 2.7E-24 189.5 5.2 170 65-235 4-204 (290)
13 2yyz_A Sugar ABC transporter, 99.8 9.2E-20 3.1E-24 194.7 5.4 197 41-274 7-227 (359)
14 1uj2_A Uridine-cytidine kinase 99.8 1.5E-18 5E-23 175.0 13.6 174 64-238 20-211 (252)
15 1b0u_A Histidine permease; ABC 99.8 5.5E-20 1.9E-24 188.1 3.0 156 41-206 10-205 (262)
16 2ga8_A Hypothetical 39.9 kDa p 99.8 1.2E-19 4.2E-24 193.0 5.2 143 94-238 157-349 (359)
17 1v43_A Sugar-binding transport 99.8 1.2E-19 4.1E-24 194.7 4.9 197 41-274 15-235 (372)
18 1odf_A YGR205W, hypothetical 3 99.8 2.4E-18 8.2E-23 178.6 14.2 176 63-240 28-276 (290)
19 1g29_1 MALK, maltose transport 99.8 1.2E-19 4.1E-24 194.7 4.6 197 41-274 7-233 (372)
20 2it1_A 362AA long hypothetical 99.8 1.3E-19 4.3E-24 193.9 4.4 196 41-273 7-226 (362)
21 2olj_A Amino acid ABC transpor 99.8 1.1E-19 3.8E-24 186.3 3.7 194 41-271 28-249 (263)
22 2pcj_A ABC transporter, lipopr 99.8 3.9E-19 1.3E-23 177.6 6.9 137 41-180 8-173 (224)
23 3d31_A Sulfate/molybdate ABC t 99.8 1.7E-19 5.8E-24 191.9 4.1 196 42-275 6-222 (348)
24 1ji0_A ABC transporter; ATP bi 99.8 3.9E-19 1.3E-23 179.4 6.5 137 41-180 10-172 (240)
25 1g6h_A High-affinity branched- 99.8 5.9E-19 2E-23 179.7 7.7 184 41-261 11-233 (257)
26 1yem_A Hypothetical protein; s 99.8 6.9E-18 2.4E-22 163.8 14.7 144 261-413 18-174 (179)
27 1z47_A CYSA, putative ABC-tran 99.8 1.2E-19 4.2E-24 193.5 2.2 137 42-181 19-179 (355)
28 4g1u_C Hemin import ATP-bindin 99.8 2.7E-19 9.4E-24 183.5 4.6 194 41-270 15-237 (266)
29 1oxx_K GLCV, glucose, ABC tran 99.8 1.6E-19 5.4E-24 192.5 2.8 194 42-272 8-232 (353)
30 1vpl_A ABC transporter, ATP-bi 99.7 6.3E-19 2.1E-23 179.9 6.8 192 41-269 19-234 (256)
31 3ghx_A Adenylate cyclase CYAB; 99.7 8.8E-18 3E-22 163.0 14.1 141 262-409 20-177 (179)
32 2een_A Hypothetical protein PH 99.7 1.6E-17 5.6E-22 160.9 14.9 148 263-414 12-178 (183)
33 2ihy_A ABC transporter, ATP-bi 99.7 1.9E-18 6.6E-23 178.4 6.8 192 41-269 25-251 (279)
34 2yz2_A Putative ABC transporte 99.7 3.3E-18 1.1E-22 175.2 8.1 185 50-271 20-228 (266)
35 2onk_A Molybdate/tungstate ABC 99.7 2.2E-18 7.6E-23 174.2 6.0 133 42-180 6-159 (240)
36 2ff7_A Alpha-hemolysin translo 99.7 5E-18 1.7E-22 172.1 5.9 136 41-180 11-178 (247)
37 1sgw_A Putative ABC transporte 99.7 7E-18 2.4E-22 167.9 6.7 135 42-180 15-166 (214)
38 2d2e_A SUFC protein; ABC-ATPas 99.7 9.4E-18 3.2E-22 170.2 7.8 137 41-180 7-176 (250)
39 1rz3_A Hypothetical protein rb 99.7 5.8E-18 2E-22 165.0 5.4 167 65-240 21-200 (201)
40 3nh6_A ATP-binding cassette SU 99.7 6.1E-18 2.1E-22 177.0 4.7 191 41-271 57-278 (306)
41 2ixe_A Antigen peptide transpo 99.7 5.1E-18 1.7E-22 174.4 4.0 135 42-180 21-189 (271)
42 2nq2_C Hypothetical ABC transp 99.7 9.8E-18 3.4E-22 170.7 4.3 131 41-180 8-161 (253)
43 2zu0_C Probable ATP-dependent 99.7 1.9E-17 6.6E-22 169.7 4.2 136 42-180 25-197 (267)
44 3gd7_A Fusion complex of cysti 99.7 6E-18 2.1E-22 182.5 0.4 194 48-281 32-253 (390)
45 2qi9_C Vitamin B12 import ATP- 99.7 1.5E-17 5E-22 169.2 2.6 126 51-180 14-166 (249)
46 1mv5_A LMRA, multidrug resista 99.7 1.1E-17 3.8E-22 168.9 1.7 136 42-181 6-173 (243)
47 3n10_A Adenylate cyclase 2; CY 99.6 1.3E-15 4.4E-20 147.0 14.7 140 263-409 21-177 (179)
48 2ghi_A Transport protein; mult 99.6 6.7E-17 2.3E-21 165.0 5.4 127 50-180 33-188 (260)
49 2dc4_A PH1012 protein, 165AA l 99.6 2.1E-15 7.1E-20 143.6 15.1 139 263-409 12-163 (165)
50 2cbz_A Multidrug resistance-as 99.6 5.8E-17 2E-21 163.3 2.1 129 42-180 8-160 (237)
51 2pjz_A Hypothetical protein ST 99.6 2.2E-16 7.6E-21 161.7 5.8 178 50-270 18-215 (263)
52 3b5x_A Lipid A export ATP-bind 99.6 2.9E-16 1E-20 177.0 5.0 135 42-180 346-513 (582)
53 3b60_A Lipid A export ATP-bind 99.6 5.3E-16 1.8E-20 174.9 7.0 190 41-270 345-567 (582)
54 4a82_A Cystic fibrosis transme 99.6 4.9E-16 1.7E-20 175.1 5.5 190 42-271 344-565 (578)
55 2pze_A Cystic fibrosis transme 99.6 3.1E-16 1.1E-20 157.1 2.7 129 42-180 11-163 (229)
56 3qf4_A ABC transporter, ATP-bi 99.6 4.3E-16 1.5E-20 176.0 3.3 190 42-271 346-567 (587)
57 2aca_A Putative adenylate cycl 99.6 1E-14 3.5E-19 142.3 11.0 143 262-412 22-181 (189)
58 3qf4_B Uncharacterized ABC tra 99.6 7.3E-16 2.5E-20 174.4 3.1 191 41-271 358-579 (598)
59 2yl4_A ATP-binding cassette SU 99.5 1.1E-15 3.7E-20 172.8 1.3 135 42-180 346-516 (595)
60 3g5u_A MCG1178, multidrug resi 99.5 2.6E-14 9E-19 174.4 5.8 127 50-180 403-559 (1284)
61 4f4c_A Multidrug resistance pr 99.4 1.4E-14 4.9E-19 177.1 2.9 190 42-271 1081-1305(1321)
62 3g5u_A MCG1178, multidrug resi 99.4 5.7E-14 2E-18 171.4 6.5 182 50-271 1046-1259(1284)
63 2bbs_A Cystic fibrosis transme 99.4 2.1E-14 7.2E-19 149.1 2.1 120 50-180 51-192 (290)
64 4f4c_A Multidrug resistance pr 99.4 1.1E-13 3.7E-18 169.4 7.2 183 49-271 430-642 (1321)
65 2qt1_A Nicotinamide riboside k 99.3 1.4E-12 4.8E-17 126.6 8.1 162 64-240 19-189 (207)
66 1yqt_A RNAse L inhibitor; ATP- 99.3 4.6E-13 1.6E-17 149.9 4.7 129 42-180 292-434 (538)
67 3bk7_A ABC transporter ATP-bin 99.3 4.5E-13 1.5E-17 152.1 3.3 148 42-206 362-524 (607)
68 3ozx_A RNAse L inhibitor; ATP 99.3 9.2E-13 3.1E-17 147.6 5.3 130 42-180 274-418 (538)
69 3ux8_A Excinuclease ABC, A sub 99.2 9.5E-13 3.2E-17 150.7 1.4 154 50-213 31-263 (670)
70 4e22_A Cytidylate kinase; P-lo 99.2 9.9E-13 3.4E-17 132.9 0.5 81 159-240 145-227 (252)
71 1yqt_A RNAse L inhibitor; ATP- 99.2 1.4E-12 4.9E-17 146.0 1.6 157 40-207 24-211 (538)
72 2f6r_A COA synthase, bifunctio 99.2 7.3E-12 2.5E-16 128.8 6.7 164 64-241 73-253 (281)
73 2grj_A Dephospho-COA kinase; T 99.2 6.7E-12 2.3E-16 122.6 6.0 148 66-243 12-173 (192)
74 3bk7_A ABC transporter ATP-bin 99.2 2.8E-12 9.4E-17 145.6 1.0 157 41-208 95-282 (607)
75 3j16_B RLI1P; ribosome recycli 99.2 7.3E-12 2.5E-16 142.2 2.7 145 50-207 360-521 (608)
76 1cke_A CK, MSSA, protein (cyti 99.1 4.2E-11 1.4E-15 117.1 6.7 80 159-240 123-205 (227)
77 2iw3_A Elongation factor 3A; a 99.1 9.5E-12 3.3E-16 147.2 2.5 129 42-180 440-581 (986)
78 2iw3_A Elongation factor 3A; a 99.1 3.7E-12 1.3E-16 150.7 -1.1 56 42-100 676-734 (986)
79 3bhd_A Thtpase, thiamine triph 99.1 4.1E-10 1.4E-14 113.4 13.7 133 279-417 53-223 (234)
80 4i1u_A Dephospho-COA kinase; s 99.1 3.4E-11 1.2E-15 119.6 5.7 161 66-243 9-188 (210)
81 1jjv_A Dephospho-COA kinase; P 99.1 3.6E-11 1.2E-15 116.3 5.5 160 67-243 3-179 (206)
82 3tr0_A Guanylate kinase, GMP k 99.1 1.9E-11 6.6E-16 117.4 1.3 161 57-240 1-171 (205)
83 3d3q_A TRNA delta(2)-isopenten 99.0 2.9E-11 9.8E-16 128.2 0.4 153 67-229 8-164 (340)
84 1z6g_A Guanylate kinase; struc 99.0 2.1E-10 7.1E-15 113.3 6.3 169 51-240 11-192 (218)
85 1htw_A HI0065; nucleotide-bind 99.0 1.2E-11 4.3E-16 117.2 -3.9 85 41-129 11-97 (158)
86 3ux8_A Excinuclease ABC, A sub 99.0 5.9E-11 2E-15 135.8 0.2 61 142-209 538-601 (670)
87 2if2_A Dephospho-COA kinase; a 99.0 2.2E-10 7.6E-15 110.4 4.0 157 67-241 2-176 (204)
88 3j16_B RLI1P; ribosome recycli 99.0 5.3E-11 1.8E-15 135.1 -1.0 165 32-207 68-274 (608)
89 1q3t_A Cytidylate kinase; nucl 98.9 9E-10 3.1E-14 109.5 6.9 80 159-240 135-217 (236)
90 3r20_A Cytidylate kinase; stru 98.9 1.7E-09 5.7E-14 109.0 8.1 79 160-239 129-209 (233)
91 1vht_A Dephospho-COA kinase; s 98.9 2.4E-09 8.3E-14 104.5 8.5 162 65-243 3-181 (218)
92 2vp4_A Deoxynucleoside kinase; 98.9 1.8E-11 6.2E-16 121.5 -8.1 164 67-243 21-211 (230)
93 2j41_A Guanylate kinase; GMP, 98.8 1.1E-09 3.9E-14 105.0 3.4 161 59-240 2-171 (207)
94 3ozx_A RNAse L inhibitor; ATP 98.8 3E-10 1E-14 127.3 -1.2 134 61-206 23-189 (538)
95 3sop_A Neuronal-specific septi 98.8 4E-10 1.4E-14 115.6 -1.0 111 67-180 3-128 (270)
96 2npi_A Protein CLP1; CLP1-PCF1 98.8 1.3E-10 4.4E-15 127.9 -6.2 121 55-181 130-276 (460)
97 3ake_A Cytidylate kinase; CMP 98.8 1.7E-08 5.9E-13 96.8 9.4 73 160-241 119-192 (208)
98 3lnc_A Guanylate kinase, GMP k 98.8 3.8E-10 1.3E-14 111.5 -2.8 37 52-91 16-53 (231)
99 1uf9_A TT1252 protein; P-loop, 98.8 2.1E-09 7.1E-14 102.8 2.4 161 64-241 6-178 (203)
100 2h92_A Cytidylate kinase; ross 98.7 2.5E-08 8.5E-13 97.1 10.1 80 160-241 119-201 (219)
101 3a00_A Guanylate kinase, GMP k 98.7 5.3E-09 1.8E-13 100.2 5.1 24 68-91 3-26 (186)
102 4gp7_A Metallophosphoesterase; 98.7 5E-10 1.7E-14 106.3 -2.6 110 55-180 1-116 (171)
103 3b85_A Phosphate starvation-in 98.7 3E-10 1E-14 112.2 -4.6 117 48-177 11-134 (208)
104 1s96_A Guanylate kinase, GMP k 98.7 3.3E-09 1.1E-13 105.5 2.0 160 59-240 12-182 (219)
105 3tj7_A GBAA_1210 protein; stru 98.7 2.3E-07 7.7E-12 91.1 14.2 119 278-400 34-178 (195)
106 2v9p_A Replication protein E1; 98.7 2.5E-09 8.5E-14 111.8 0.2 106 42-180 106-226 (305)
107 4eun_A Thermoresistant glucoki 98.7 1.3E-08 4.3E-13 98.5 5.2 63 59-127 25-93 (200)
108 3lw7_A Adenylate kinase relate 98.6 7.6E-09 2.6E-13 95.4 1.9 157 67-243 2-163 (179)
109 3t61_A Gluconokinase; PSI-biol 98.6 4.2E-08 1.5E-12 94.5 6.3 35 66-101 18-52 (202)
110 3pih_A Uvrabc system protein A 98.6 1.2E-08 4E-13 120.6 2.3 66 142-214 800-868 (916)
111 2vf7_A UVRA2, excinuclease ABC 98.6 7.3E-09 2.5E-13 121.4 0.5 59 142-207 725-786 (842)
112 3vaa_A Shikimate kinase, SK; s 98.6 7.8E-09 2.7E-13 99.9 0.2 51 47-101 9-59 (199)
113 1tq4_A IIGP1, interferon-induc 98.6 6.4E-10 2.2E-14 120.8 -8.7 63 51-115 37-117 (413)
114 3b9q_A Chloroplast SRP recepto 98.5 4.4E-08 1.5E-12 102.0 4.3 74 54-130 91-179 (302)
115 2r6f_A Excinuclease ABC subuni 98.5 3.1E-08 1.1E-12 116.9 2.8 64 142-212 840-906 (972)
116 2ygr_A Uvrabc system protein A 98.5 3.6E-08 1.2E-12 116.7 2.2 64 142-212 858-924 (993)
117 1znw_A Guanylate kinase, GMP k 98.4 2.6E-08 8.9E-13 96.9 0.5 71 48-126 7-84 (207)
118 1knq_A Gluconate kinase; ALFA/ 98.4 3.2E-07 1.1E-11 86.1 7.8 32 67-101 9-40 (175)
119 2dpy_A FLII, flagellum-specifi 98.4 5.1E-08 1.8E-12 106.6 2.4 78 49-130 144-238 (438)
120 2og2_A Putative signal recogni 98.4 1.3E-07 4.5E-12 100.9 4.6 74 54-130 148-236 (359)
121 2yhs_A FTSY, cell division pro 98.4 1.4E-07 4.7E-12 104.5 4.7 76 53-131 283-372 (503)
122 1kgd_A CASK, peripheral plasma 98.4 1.4E-07 4.8E-12 89.8 4.1 24 68-91 7-30 (180)
123 3v85_A CYTH-like phosphatase; 98.4 1.6E-06 5.5E-11 85.3 11.7 124 277-400 29-195 (210)
124 2gza_A Type IV secretion syste 98.4 7.2E-08 2.5E-12 102.6 2.1 75 53-130 165-248 (361)
125 3nwj_A ATSK2; P loop, shikimat 98.4 2.7E-08 9.3E-13 101.0 -1.3 40 48-90 30-72 (250)
126 2gfg_A BH2851; antiparallel ba 98.4 7.1E-06 2.4E-10 80.0 15.8 125 280-409 36-186 (193)
127 2pt7_A CAG-ALFA; ATPase, prote 98.4 1.3E-08 4.6E-13 107.1 -4.1 48 52-102 160-208 (330)
128 2qor_A Guanylate kinase; phosp 98.4 5.5E-07 1.9E-11 87.2 7.4 24 68-91 14-37 (204)
129 4aby_A DNA repair protein RECN 98.4 6.1E-08 2.1E-12 103.6 0.6 37 50-90 48-84 (415)
130 3szr_A Interferon-induced GTP- 98.3 1.9E-07 6.6E-12 105.9 3.4 62 69-130 48-121 (608)
131 1rj9_A FTSY, signal recognitio 98.3 5.3E-07 1.8E-11 94.0 6.3 65 66-130 102-180 (304)
132 1tev_A UMP-CMP kinase; ploop, 98.3 2.4E-07 8.2E-12 87.4 2.5 35 66-101 3-37 (196)
133 3euj_A Chromosome partition pr 98.2 3.6E-07 1.2E-11 101.0 3.1 50 50-103 17-67 (483)
134 2ehv_A Hypothetical protein PH 98.2 2.1E-07 7.2E-12 91.4 0.8 40 59-101 26-68 (251)
135 2qm8_A GTPase/ATPase; G protei 98.2 9.5E-08 3.3E-12 100.8 -2.1 72 45-119 37-120 (337)
136 1zp6_A Hypothetical protein AT 98.2 1E-06 3.5E-11 83.5 4.6 64 60-129 6-74 (191)
137 2jaq_A Deoxyguanosine kinase; 98.2 3.7E-07 1.3E-11 86.9 1.1 61 176-241 123-185 (205)
138 1y63_A LMAJ004144AAA protein; 98.2 4.9E-06 1.7E-10 79.2 9.0 44 55-101 2-45 (184)
139 1ye8_A Protein THEP1, hypothet 98.2 9.4E-08 3.2E-12 91.9 -3.2 101 68-180 2-116 (178)
140 3kb2_A SPBC2 prophage-derived 98.1 1.9E-06 6.6E-11 79.7 5.5 34 67-101 2-35 (173)
141 2obl_A ESCN; ATPase, hydrolase 98.1 7.7E-07 2.6E-11 94.4 2.7 62 33-101 45-107 (347)
142 1qf9_A UMP/CMP kinase, protein 98.1 1.9E-06 6.6E-11 81.0 5.0 34 66-100 6-39 (194)
143 3e70_C DPA, signal recognition 98.1 1.7E-06 6E-11 91.1 5.2 67 64-130 127-207 (328)
144 2qnr_A Septin-2, protein NEDD5 98.1 1.9E-07 6.5E-12 96.9 -2.7 49 43-101 4-54 (301)
145 1tf7_A KAIC; homohexamer, hexa 98.1 4.2E-07 1.4E-11 101.1 -0.3 66 48-116 23-98 (525)
146 1ukz_A Uridylate kinase; trans 98.1 2.3E-05 7.8E-10 75.1 11.6 37 64-101 13-49 (203)
147 3tau_A Guanylate kinase, GMP k 98.1 1.3E-06 4.5E-11 85.0 2.9 24 68-91 10-33 (208)
148 2eyu_A Twitching motility prot 98.1 6.4E-07 2.2E-11 91.2 0.6 47 51-102 15-63 (261)
149 2qag_B Septin-6, protein NEDD5 98.0 1.9E-07 6.6E-12 101.7 -3.8 78 45-126 23-102 (427)
150 1ex7_A Guanylate kinase; subst 98.0 1.7E-05 5.7E-10 77.1 9.9 140 69-215 4-148 (186)
151 4a74_A DNA repair and recombin 98.0 1.5E-06 5.2E-11 84.2 2.4 64 59-126 21-93 (231)
152 1lvg_A Guanylate kinase, GMP k 98.0 1.7E-05 5.7E-10 76.8 9.5 24 68-91 6-29 (198)
153 2cdn_A Adenylate kinase; phosp 98.0 1.6E-05 5.4E-10 76.3 9.3 37 64-101 18-54 (201)
154 1p9r_A General secretion pathw 97.9 1.8E-06 6E-11 93.9 1.2 46 51-101 157-203 (418)
155 1u0l_A Probable GTPase ENGC; p 97.9 3.8E-06 1.3E-10 86.9 3.1 56 60-118 166-232 (301)
156 1zuh_A Shikimate kinase; alpha 97.9 7.5E-06 2.6E-10 76.2 4.4 33 67-100 8-40 (168)
157 2yv5_A YJEQ protein; hydrolase 97.9 4.8E-06 1.6E-10 86.3 3.3 50 68-118 167-227 (302)
158 2x8a_A Nuclear valosin-contain 97.8 5.7E-07 2E-11 91.9 -4.2 47 50-102 33-79 (274)
159 2bdt_A BH3686; alpha-beta prot 97.8 7E-06 2.4E-10 77.9 3.5 60 68-129 4-64 (189)
160 3uie_A Adenylyl-sulfate kinase 97.8 1.3E-06 4.6E-11 84.1 -2.2 54 46-102 8-63 (200)
161 3cm0_A Adenylate kinase; ATP-b 97.8 3.1E-05 1.1E-09 72.8 7.2 25 66-90 4-28 (186)
162 2bwj_A Adenylate kinase 5; pho 97.8 1.1E-05 3.6E-10 76.6 4.0 34 67-101 13-46 (199)
163 2bbw_A Adenylate kinase 4, AK4 97.8 2.2E-06 7.6E-11 85.3 -0.9 64 66-129 27-97 (246)
164 2c95_A Adenylate kinase 1; tra 97.8 2.2E-05 7.6E-10 74.2 5.7 35 66-101 9-43 (196)
165 4eaq_A DTMP kinase, thymidylat 97.8 8.9E-05 3.1E-09 73.7 10.3 39 53-91 13-51 (229)
166 2i3b_A HCR-ntpase, human cance 97.8 3.3E-06 1.1E-10 82.0 -0.2 47 68-115 3-54 (189)
167 1t9h_A YLOQ, probable GTPase E 97.8 4.5E-06 1.5E-10 87.2 0.6 66 58-127 168-247 (307)
168 2oap_1 GSPE-2, type II secreti 97.7 4.7E-06 1.6E-10 92.8 0.3 49 51-102 248-297 (511)
169 1ewq_A DNA mismatch repair pro 97.7 1.1E-06 3.9E-11 102.1 -5.5 40 50-95 566-607 (765)
170 3trf_A Shikimate kinase, SK; a 97.7 5.1E-06 1.8E-10 78.3 -0.1 34 67-101 6-39 (185)
171 2fbl_A Hypothetical protein NE 97.6 0.00016 5.4E-09 68.3 9.3 94 280-385 25-122 (153)
172 2pt5_A Shikimate kinase, SK; a 97.6 3.7E-06 1.3E-10 77.9 -2.0 33 68-101 2-34 (168)
173 2qag_C Septin-7; cell cycle, c 97.6 1.3E-06 4.3E-11 95.1 -6.1 38 44-90 18-55 (418)
174 3iij_A Coilin-interacting nucl 97.6 5.9E-05 2E-09 70.9 6.1 34 67-101 12-45 (180)
175 2ewv_A Twitching motility prot 97.6 1.3E-05 4.6E-10 85.5 1.5 38 60-100 133-172 (372)
176 3a4m_A L-seryl-tRNA(SEC) kinas 97.6 0.00014 4.9E-09 73.2 9.0 25 66-90 4-28 (260)
177 1cr0_A DNA primase/helicase; R 97.6 1.3E-05 4.3E-10 81.9 0.9 41 51-94 23-64 (296)
178 2rhm_A Putative kinase; P-loop 97.6 3.8E-05 1.3E-09 72.4 4.1 36 65-101 4-39 (193)
179 3fdi_A Uncharacterized protein 97.6 6.2E-05 2.1E-09 73.4 5.7 24 67-90 7-30 (201)
180 2rcn_A Probable GTPase ENGC; Y 97.5 3.4E-05 1.2E-09 82.3 3.7 69 53-125 206-280 (358)
181 2plr_A DTMP kinase, probable t 97.5 0.00012 4E-09 69.8 6.7 26 66-91 4-29 (213)
182 2f1r_A Molybdopterin-guanine d 97.5 2E-05 6.8E-10 75.4 1.3 36 67-102 3-42 (171)
183 1tf7_A KAIC; homohexamer, hexa 97.5 2.7E-05 9.1E-10 86.6 1.8 31 57-90 275-305 (525)
184 2ocp_A DGK, deoxyguanosine kin 97.5 8.7E-06 3E-10 80.7 -2.2 27 66-92 2-28 (241)
185 1e69_A Chromosome segregation 97.5 5.2E-05 1.8E-09 78.9 3.5 35 146-180 218-256 (322)
186 3hdt_A Putative kinase; struct 97.4 6.7E-05 2.3E-09 74.7 4.0 25 66-90 14-38 (223)
187 3tlx_A Adenylate kinase 2; str 97.4 0.00011 3.8E-09 73.3 4.8 36 64-100 27-62 (243)
188 3dl0_A Adenylate kinase; phosp 97.4 0.00013 4.3E-09 70.7 5.1 33 68-101 2-34 (216)
189 1zu4_A FTSY; GTPase, signal re 97.4 0.00011 3.7E-09 77.0 4.6 44 54-100 96-140 (320)
190 1lw7_A Transcriptional regulat 97.3 5.6E-05 1.9E-09 79.9 2.2 38 53-93 158-198 (365)
191 1ltq_A Polynucleotide kinase; 97.3 0.00011 3.7E-09 74.8 4.0 34 66-99 2-35 (301)
192 3fb4_A Adenylate kinase; psych 97.3 8.3E-05 2.8E-09 71.8 2.9 33 68-101 2-34 (216)
193 3jvv_A Twitching mobility prot 97.3 6.6E-05 2.3E-09 79.8 2.1 36 59-97 119-156 (356)
194 1qhl_A Protein (cell division 97.3 1.4E-05 4.6E-10 80.1 -3.3 42 57-102 22-64 (227)
195 1kag_A SKI, shikimate kinase I 97.2 0.00013 4.3E-09 67.8 3.1 23 68-90 6-28 (173)
196 2w0m_A SSO2452; RECA, SSPF, un 97.2 6.5E-05 2.2E-09 72.3 1.0 36 52-90 11-47 (235)
197 1aky_A Adenylate kinase; ATP:A 97.2 0.00024 8.1E-09 69.1 4.7 35 66-101 4-38 (220)
198 3kta_A Chromosome segregation 97.2 0.00014 4.8E-09 68.3 2.9 33 54-90 18-50 (182)
199 1pzn_A RAD51, DNA repair and r 97.2 9.4E-05 3.2E-09 78.2 1.7 70 53-126 120-199 (349)
200 3thx_B DNA mismatch repair pro 97.2 0.00014 4.8E-09 86.1 3.1 38 49-89 659-696 (918)
201 1wb9_A DNA mismatch repair pro 97.1 0.00022 7.4E-09 83.5 4.4 38 49-90 594-631 (800)
202 1n0w_A DNA repair protein RAD5 97.1 0.00037 1.3E-08 67.8 5.4 40 60-102 21-68 (243)
203 1ixz_A ATP-dependent metallopr 97.1 0.00014 4.7E-09 72.3 2.0 45 51-101 39-83 (254)
204 1oix_A RAS-related protein RAB 97.1 0.00042 1.5E-08 65.7 5.0 25 66-90 29-53 (191)
205 2pez_A Bifunctional 3'-phospho 97.1 0.0002 6.9E-09 67.2 2.6 37 66-102 5-43 (179)
206 1nij_A Hypothetical protein YJ 97.1 0.00015 5E-09 75.6 1.7 37 66-102 4-49 (318)
207 3ec2_A DNA replication protein 97.0 0.00025 8.5E-09 66.7 3.0 30 58-90 33-62 (180)
208 1iy2_A ATP-dependent metallopr 97.0 0.00018 6E-09 72.8 2.0 46 50-101 62-107 (278)
209 3thx_A DNA mismatch repair pro 97.0 0.00034 1.2E-08 83.1 4.3 36 50-88 649-684 (934)
210 3be4_A Adenylate kinase; malar 97.0 0.00042 1.4E-08 67.5 4.1 35 66-101 5-39 (217)
211 1pui_A ENGB, probable GTP-bind 97.0 7.7E-05 2.6E-09 71.1 -1.3 35 51-90 16-50 (210)
212 1svm_A Large T antigen; AAA+ f 96.9 0.00018 6.3E-09 77.1 1.3 38 50-90 156-193 (377)
213 2kjq_A DNAA-related protein; s 96.9 0.00023 7.7E-09 66.1 1.7 36 62-100 35-72 (149)
214 2o8b_B DNA mismatch repair pro 96.9 0.00041 1.4E-08 83.2 3.9 39 48-90 767-812 (1022)
215 1udx_A The GTP-binding protein 96.9 0.00039 1.3E-08 75.5 3.1 35 53-90 147-181 (416)
216 1e4v_A Adenylate kinase; trans 96.9 0.00091 3.1E-08 64.7 5.4 33 68-101 2-34 (214)
217 3ney_A 55 kDa erythrocyte memb 96.9 0.00067 2.3E-08 66.4 4.3 24 68-91 21-44 (197)
218 1qhx_A CPT, protein (chloramph 96.8 0.00079 2.7E-08 62.6 4.6 34 67-101 4-39 (178)
219 2ze6_A Isopentenyl transferase 96.8 0.0007 2.4E-08 68.0 4.5 34 67-101 2-35 (253)
220 1in4_A RUVB, holliday junction 96.7 0.00011 3.7E-09 76.7 -2.7 43 48-90 29-75 (334)
221 3cr8_A Sulfate adenylyltranfer 96.7 0.00061 2.1E-08 76.5 3.2 40 60-102 366-408 (552)
222 1m7g_A Adenylylsulfate kinase; 96.7 0.00063 2.1E-08 65.8 2.8 35 67-101 26-63 (211)
223 2f9l_A RAB11B, member RAS onco 96.7 0.0011 3.9E-08 62.8 4.5 25 66-90 5-29 (199)
224 2p5t_B PEZT; postsegregational 96.7 0.00088 3E-08 67.0 3.8 38 63-101 29-66 (253)
225 1vma_A Cell division protein F 96.7 0.00057 2E-08 71.2 2.4 35 66-100 104-139 (306)
226 2cvh_A DNA repair and recombin 96.7 0.0011 3.7E-08 63.5 4.1 38 59-100 16-53 (220)
227 1ly1_A Polynucleotide kinase; 96.6 0.0011 3.8E-08 61.3 3.9 23 66-88 2-24 (181)
228 2v54_A DTMP kinase, thymidylat 96.6 0.0016 5.4E-08 61.8 4.5 34 66-99 4-37 (204)
229 1ls1_A Signal recognition part 96.5 0.00096 3.3E-08 68.9 2.7 43 54-101 91-134 (295)
230 3zvl_A Bifunctional polynucleo 96.5 0.0036 1.2E-07 67.5 7.1 27 64-90 256-282 (416)
231 1kht_A Adenylate kinase; phosp 96.5 0.0013 4.3E-08 61.5 3.0 24 67-90 4-27 (192)
232 1e6c_A Shikimate kinase; phosp 96.4 0.0012 4E-08 61.0 2.7 34 67-101 3-36 (173)
233 1via_A Shikimate kinase; struc 96.4 0.0011 3.9E-08 61.8 2.6 32 68-100 6-37 (175)
234 2pbr_A DTMP kinase, thymidylat 96.4 0.0019 6.4E-08 60.5 4.0 32 68-99 2-35 (195)
235 1ni3_A YCHF GTPase, YCHF GTP-b 96.4 0.0023 7.8E-08 68.9 5.1 33 68-100 22-67 (392)
236 2iyv_A Shikimate kinase, SK; t 96.4 0.0011 3.7E-08 62.3 2.2 33 68-101 4-36 (184)
237 1gvn_B Zeta; postsegregational 96.4 0.0022 7.6E-08 65.7 4.8 37 63-100 30-66 (287)
238 3qf7_A RAD50; ABC-ATPase, ATPa 96.4 0.0016 5.3E-08 69.2 3.6 34 53-90 14-47 (365)
239 2yvu_A Probable adenylyl-sulfa 96.4 0.0024 8.2E-08 60.2 4.5 25 66-90 13-37 (186)
240 1zd8_A GTP:AMP phosphotransfer 96.4 0.0016 5.4E-08 63.6 3.2 35 66-101 7-41 (227)
241 1nks_A Adenylate kinase; therm 96.4 0.0015 5.2E-08 60.9 3.0 24 67-90 2-25 (194)
242 2z0h_A DTMP kinase, thymidylat 96.3 0.0015 5.2E-08 61.5 2.9 23 68-90 2-24 (197)
243 1np6_A Molybdopterin-guanine d 96.3 0.0027 9.4E-08 60.6 4.6 35 66-100 6-44 (174)
244 3gmt_A Adenylate kinase; ssgci 96.3 0.0027 9.3E-08 63.6 4.6 32 68-100 10-41 (230)
245 2wwf_A Thymidilate kinase, put 96.3 0.0015 5.2E-08 62.3 2.7 25 66-90 10-34 (212)
246 2vli_A Antibiotic resistance p 96.3 0.0015 5.1E-08 60.9 2.4 25 66-90 5-29 (183)
247 1nn5_A Similar to deoxythymidy 96.3 0.0017 5.7E-08 62.1 2.7 25 66-90 9-33 (215)
248 1sxj_E Activator 1 40 kDa subu 96.2 0.0022 7.5E-08 66.3 3.3 38 63-101 34-73 (354)
249 2p67_A LAO/AO transport system 96.2 0.00086 2.9E-08 70.4 0.1 41 47-90 40-80 (341)
250 1nlf_A Regulatory protein REPA 96.2 0.0027 9.1E-08 64.1 3.8 28 60-90 27-54 (279)
251 2o5v_A DNA replication and rep 96.2 0.0018 6.3E-08 68.8 2.6 35 52-90 16-50 (359)
252 1xjc_A MOBB protein homolog; s 96.2 0.0035 1.2E-07 59.9 4.2 34 66-99 4-41 (169)
253 1w1w_A Structural maintenance 96.1 0.0036 1.2E-07 67.5 4.8 29 59-90 22-50 (430)
254 2www_A Methylmalonic aciduria 96.1 0.0023 8E-08 67.5 3.2 35 66-100 74-109 (349)
255 1gtv_A TMK, thymidylate kinase 96.1 0.0011 3.7E-08 63.4 0.6 23 68-90 2-24 (214)
256 3k1j_A LON protease, ATP-depen 96.1 0.0011 3.9E-08 74.7 0.8 52 47-101 44-97 (604)
257 3crm_A TRNA delta(2)-isopenten 96.1 0.0047 1.6E-07 64.9 5.5 34 67-101 6-39 (323)
258 2dr3_A UPF0273 protein PH0284; 96.1 0.0038 1.3E-07 60.6 4.5 39 59-100 19-59 (247)
259 3exa_A TRNA delta(2)-isopenten 96.1 0.0046 1.6E-07 64.9 5.2 35 66-101 3-37 (322)
260 2px0_A Flagellar biosynthesis 96.1 0.0024 8.3E-08 65.9 3.1 28 67-94 106-134 (296)
261 1m2o_B GTP-binding protein SAR 96.1 0.0036 1.2E-07 59.0 4.0 35 51-89 12-46 (190)
262 3m6a_A ATP-dependent protease 96.0 0.0016 5.4E-08 72.8 1.1 48 50-101 96-144 (543)
263 4hlc_A DTMP kinase, thymidylat 96.0 0.0036 1.2E-07 61.2 3.5 23 68-90 4-26 (205)
264 3hr8_A Protein RECA; alpha and 95.9 0.0052 1.8E-07 65.3 4.4 39 60-101 58-98 (356)
265 3foz_A TRNA delta(2)-isopenten 95.8 0.0069 2.4E-07 63.4 5.1 35 66-101 10-44 (316)
266 3a8t_A Adenylate isopentenyltr 95.8 0.0063 2.2E-07 64.3 4.9 36 65-101 39-74 (339)
267 3lda_A DNA repair protein RAD5 95.8 0.0048 1.6E-07 66.6 4.1 40 60-102 175-222 (400)
268 1zak_A Adenylate kinase; ATP:A 95.8 0.0031 1.1E-07 61.2 2.1 25 66-90 5-29 (222)
269 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0057 1.9E-07 56.6 3.7 23 68-90 25-47 (149)
270 2wji_A Ferrous iron transport 95.7 0.0053 1.8E-07 56.3 3.4 24 67-90 4-27 (165)
271 3umf_A Adenylate kinase; rossm 95.7 0.0046 1.6E-07 61.2 3.2 37 54-90 17-53 (217)
272 2xb4_A Adenylate kinase; ATP-b 95.6 0.0052 1.8E-07 60.1 2.8 33 68-101 2-34 (223)
273 2wjg_A FEOB, ferrous iron tran 95.6 0.0069 2.4E-07 56.1 3.6 24 66-89 7-30 (188)
274 2dhr_A FTSH; AAA+ protein, hex 95.6 0.0045 1.5E-07 68.7 2.6 44 52-101 55-98 (499)
275 1sxj_C Activator 1 40 kDa subu 95.5 0.0014 4.8E-08 68.0 -1.5 42 48-90 29-70 (340)
276 1ak2_A Adenylate kinase isoenz 95.5 0.0059 2E-07 59.9 3.0 35 65-100 15-49 (233)
277 1f6b_A SAR1; gtpases, N-termin 95.5 0.0019 6.6E-08 61.4 -0.6 34 51-88 14-47 (198)
278 2gj8_A MNME, tRNA modification 95.4 0.0075 2.6E-07 56.0 3.1 23 67-89 5-27 (172)
279 2ffh_A Protein (FFH); SRP54, s 95.4 0.0074 2.5E-07 65.7 3.4 41 54-99 91-132 (425)
280 2gks_A Bifunctional SAT/APS ki 95.3 0.026 9E-07 63.2 7.7 37 64-100 370-408 (546)
281 3eph_A TRNA isopentenyltransfe 95.3 0.0098 3.4E-07 64.3 4.0 33 67-100 3-35 (409)
282 1lv7_A FTSH; alpha/beta domain 95.2 0.013 4.4E-07 58.0 4.2 33 68-101 47-79 (257)
283 3qkt_A DNA double-strand break 95.2 0.013 4.5E-07 61.2 4.5 23 68-90 25-47 (339)
284 2vf7_A UVRA2, excinuclease ABC 95.1 0.0099 3.4E-07 69.8 3.7 29 53-84 26-54 (842)
285 3cf0_A Transitional endoplasmi 95.0 0.015 5E-07 59.6 4.3 32 68-100 51-82 (301)
286 2zr9_A Protein RECA, recombina 95.0 0.018 6.1E-07 60.8 5.0 38 60-100 58-97 (349)
287 1j8m_F SRP54, signal recogniti 95.0 0.0061 2.1E-07 63.0 1.3 39 56-98 92-131 (297)
288 1p5z_B DCK, deoxycytidine kina 94.9 0.0084 2.9E-07 59.9 2.1 29 64-92 22-50 (263)
289 3qks_A DNA double-strand break 94.9 0.015 5.2E-07 56.3 3.7 23 68-90 25-47 (203)
290 1mky_A Probable GTP-binding pr 94.9 0.023 7.9E-07 61.4 5.6 26 65-90 179-204 (439)
291 2zej_A Dardarin, leucine-rich 94.8 0.011 3.8E-07 55.2 2.5 23 67-89 3-25 (184)
292 3lxx_A GTPase IMAP family memb 94.8 0.016 5.4E-07 56.8 3.6 27 64-90 27-53 (239)
293 3bc1_A RAS-related protein RAB 94.7 0.021 7.2E-07 52.5 4.1 26 64-89 9-34 (195)
294 1kao_A RAP2A; GTP-binding prot 94.7 0.021 7.1E-07 51.0 4.0 24 66-89 3-26 (167)
295 1z2a_A RAS-related protein RAB 94.7 0.021 7.1E-07 51.3 3.9 26 65-90 4-29 (168)
296 2ged_A SR-beta, signal recogni 94.6 0.02 6.8E-07 53.3 3.8 26 65-90 47-72 (193)
297 4dsu_A GTPase KRAS, isoform 2B 94.6 0.021 7.3E-07 52.4 3.9 26 65-90 3-28 (189)
298 2ygr_A Uvrabc system protein A 94.6 0.014 4.9E-07 69.4 3.3 28 53-83 36-63 (993)
299 3sr0_A Adenylate kinase; phosp 94.6 0.015 5.3E-07 56.8 3.0 32 68-100 2-33 (206)
300 2r6f_A Excinuclease ABC subuni 94.6 0.015 5E-07 69.2 3.2 28 53-83 34-61 (972)
301 2ce2_X GTPase HRAS; signaling 94.6 0.021 7E-07 50.9 3.5 24 67-90 4-27 (166)
302 3kl4_A SRP54, signal recogniti 94.6 0.024 8.2E-07 61.8 4.6 26 65-90 96-121 (433)
303 2fn4_A P23, RAS-related protei 94.6 0.024 8.3E-07 51.5 4.0 26 64-89 7-32 (181)
304 1u8z_A RAS-related protein RAL 94.6 0.024 8.2E-07 50.7 3.9 24 66-89 4-27 (168)
305 1ega_A Protein (GTP-binding pr 94.6 0.017 6E-07 59.3 3.4 23 67-89 9-31 (301)
306 3t34_A Dynamin-related protein 94.5 0.013 4.5E-07 61.4 2.4 34 50-89 24-57 (360)
307 3pih_A Uvrabc system protein A 94.4 0.013 4.3E-07 69.6 2.3 28 53-83 14-41 (916)
308 1ky3_A GTP-binding protein YPT 94.4 0.026 9E-07 51.4 4.0 26 65-90 7-32 (182)
309 1c1y_A RAS-related protein RAP 94.4 0.026 9E-07 50.6 3.9 24 66-89 3-26 (167)
310 3con_A GTPase NRAS; structural 94.4 0.026 8.7E-07 52.4 3.8 26 64-89 19-44 (190)
311 1wms_A RAB-9, RAB9, RAS-relate 94.4 0.026 8.9E-07 51.4 3.8 26 65-90 6-31 (177)
312 1z08_A RAS-related protein RAB 94.4 0.027 9.4E-07 50.7 3.9 25 65-89 5-29 (170)
313 3k53_A Ferrous iron transport 94.4 0.02 6.8E-07 57.5 3.2 24 67-90 4-27 (271)
314 3v9p_A DTMP kinase, thymidylat 94.3 0.015 5E-07 58.0 2.1 38 53-90 12-49 (227)
315 3clv_A RAB5 protein, putative; 94.3 0.032 1.1E-06 51.5 4.3 26 65-90 6-31 (208)
316 2dyk_A GTP-binding protein; GT 94.3 0.029 9.8E-07 50.1 3.9 24 67-90 2-25 (161)
317 3auy_A DNA double-strand break 94.3 0.034 1.2E-06 58.7 5.0 34 53-90 16-49 (371)
318 1ek0_A Protein (GTP-binding pr 94.3 0.028 9.4E-07 50.5 3.7 24 67-90 4-27 (170)
319 2erx_A GTP-binding protein DI- 94.3 0.027 9.2E-07 50.7 3.6 24 66-89 3-26 (172)
320 2qmh_A HPR kinase/phosphorylas 94.3 0.03 1E-06 55.2 4.1 43 52-100 24-66 (205)
321 1z0j_A RAB-22, RAS-related pro 94.3 0.028 9.7E-07 50.5 3.8 25 66-90 6-30 (170)
322 2oil_A CATX-8, RAS-related pro 94.2 0.032 1.1E-06 51.9 4.2 27 64-90 23-49 (193)
323 2lkc_A Translation initiation 94.2 0.025 8.5E-07 51.6 3.3 25 65-89 7-31 (178)
324 1upt_A ARL1, ADP-ribosylation 94.2 0.036 1.2E-06 50.0 4.3 25 65-89 6-30 (171)
325 2nzj_A GTP-binding protein REM 94.1 0.028 9.5E-07 51.0 3.4 24 66-89 4-27 (175)
326 2hxs_A RAB-26, RAS-related pro 94.1 0.035 1.2E-06 50.5 4.2 25 65-89 5-29 (178)
327 3p32_A Probable GTPase RV1496/ 94.1 0.043 1.5E-06 57.7 5.3 37 63-99 76-116 (355)
328 1g16_A RAS-related protein SEC 94.1 0.03 1E-06 50.4 3.5 25 66-90 3-27 (170)
329 1r2q_A RAS-related protein RAB 94.1 0.032 1.1E-06 50.0 3.7 24 66-89 6-29 (170)
330 2wsm_A Hydrogenase expression/ 94.1 0.029 9.9E-07 53.6 3.6 25 66-90 30-54 (221)
331 1ypw_A Transitional endoplasmi 94.0 0.029 9.8E-07 65.6 4.1 38 59-100 234-271 (806)
332 3ld9_A DTMP kinase, thymidylat 94.0 0.029 9.9E-07 55.7 3.5 27 64-90 19-45 (223)
333 1m8p_A Sulfate adenylyltransfe 94.0 0.022 7.5E-07 64.2 2.9 41 62-102 392-435 (573)
334 1svi_A GTP-binding protein YSX 93.9 0.027 9.4E-07 52.3 3.0 25 65-89 22-46 (195)
335 2qtf_A Protein HFLX, GTP-bindi 93.9 0.036 1.2E-06 58.8 4.3 24 67-90 180-203 (364)
336 2gf0_A GTP-binding protein DI- 93.9 0.036 1.2E-06 51.5 3.8 26 64-89 6-31 (199)
337 4edh_A DTMP kinase, thymidylat 93.9 0.03 1E-06 54.9 3.4 24 67-90 7-30 (213)
338 2g6b_A RAS-related protein RAB 93.9 0.041 1.4E-06 50.1 4.1 27 64-90 8-34 (180)
339 1z0f_A RAB14, member RAS oncog 93.9 0.042 1.4E-06 49.8 4.1 27 64-90 13-39 (179)
340 2ohf_A Protein OLA1, GTP-bindi 93.9 0.034 1.2E-06 59.9 4.0 22 68-89 24-45 (396)
341 2a9k_A RAS-related protein RAL 93.8 0.041 1.4E-06 50.3 3.9 24 66-89 18-41 (187)
342 1nrj_B SR-beta, signal recogni 93.8 0.037 1.3E-06 52.7 3.7 27 64-90 10-36 (218)
343 3q85_A GTP-binding protein REM 93.8 0.036 1.2E-06 50.0 3.4 23 67-89 3-25 (169)
344 1x6v_B Bifunctional 3'-phospho 93.7 0.045 1.5E-06 62.3 4.9 38 65-102 51-90 (630)
345 2efe_B Small GTP-binding prote 93.7 0.043 1.5E-06 50.0 3.9 25 65-89 11-35 (181)
346 3t1o_A Gliding protein MGLA; G 93.7 0.048 1.6E-06 50.3 4.2 27 64-90 12-38 (198)
347 3lv8_A DTMP kinase, thymidylat 93.7 0.028 9.6E-07 56.3 2.7 25 66-90 27-51 (236)
348 2y8e_A RAB-protein 6, GH09086P 93.6 0.038 1.3E-06 50.1 3.4 24 66-89 14-37 (179)
349 4fcw_A Chaperone protein CLPB; 93.6 0.05 1.7E-06 54.8 4.6 24 67-90 48-71 (311)
350 2w58_A DNAI, primosome compone 93.6 0.039 1.3E-06 52.3 3.5 24 67-90 55-78 (202)
351 3tkl_A RAS-related protein RAB 93.6 0.048 1.7E-06 50.5 4.1 27 64-90 14-40 (196)
352 2gf9_A RAS-related protein RAB 93.6 0.048 1.6E-06 50.7 4.1 27 64-90 20-46 (189)
353 3dm5_A SRP54, signal recogniti 93.6 0.049 1.7E-06 59.5 4.7 26 65-90 99-124 (443)
354 3kkq_A RAS-related protein M-R 93.6 0.051 1.8E-06 49.9 4.2 26 64-89 16-41 (183)
355 1vg8_A RAS-related protein RAB 93.6 0.046 1.6E-06 51.3 4.0 26 65-90 7-32 (207)
356 1jbk_A CLPB protein; beta barr 93.6 0.041 1.4E-06 50.1 3.5 23 68-90 45-67 (195)
357 1ko7_A HPR kinase/phosphatase; 93.6 0.064 2.2E-06 56.1 5.4 38 48-89 130-167 (314)
358 3b9p_A CG5977-PA, isoform A; A 93.6 0.054 1.9E-06 54.5 4.7 23 68-90 56-78 (297)
359 3pqc_A Probable GTP-binding pr 93.6 0.034 1.2E-06 51.3 3.0 24 66-89 23-46 (195)
360 3tw8_B RAS-related protein RAB 93.6 0.044 1.5E-06 49.8 3.7 25 65-89 8-32 (181)
361 3ice_A Transcription terminati 93.6 0.028 9.4E-07 60.8 2.6 33 55-90 166-198 (422)
362 4ad8_A DNA repair protein RECN 93.6 0.013 4.4E-07 64.8 -0.0 35 52-90 50-84 (517)
363 2bov_A RAla, RAS-related prote 93.5 0.047 1.6E-06 51.0 3.9 25 65-89 13-37 (206)
364 1z06_A RAS-related protein RAB 93.5 0.049 1.7E-06 50.6 4.0 25 65-89 19-43 (189)
365 2z43_A DNA repair and recombin 93.5 0.065 2.2E-06 55.5 5.3 28 60-90 104-131 (324)
366 3tqf_A HPR(Ser) kinase; transf 93.5 0.051 1.8E-06 52.4 4.1 35 51-89 5-39 (181)
367 2xtp_A GTPase IMAP family memb 93.5 0.037 1.3E-06 54.7 3.3 26 64-89 20-45 (260)
368 1njg_A DNA polymerase III subu 93.5 0.035 1.2E-06 52.4 2.9 29 62-90 41-69 (250)
369 2bme_A RAB4A, RAS-related prot 93.5 0.048 1.6E-06 50.1 3.8 26 65-90 9-34 (186)
370 3bos_A Putative DNA replicatio 93.5 0.042 1.4E-06 52.5 3.5 23 68-90 54-76 (242)
371 4ag6_A VIRB4 ATPase, type IV s 93.4 0.046 1.6E-06 57.8 3.9 23 68-90 37-59 (392)
372 2a5j_A RAS-related protein RAB 93.4 0.057 1.9E-06 50.3 4.1 26 65-90 20-45 (191)
373 3t5g_A GTP-binding protein RHE 93.4 0.044 1.5E-06 50.2 3.3 24 66-89 6-29 (181)
374 1fnn_A CDC6P, cell division co 93.4 0.056 1.9E-06 55.9 4.5 23 68-90 46-68 (389)
375 1moz_A ARL1, ADP-ribosylation 93.3 0.034 1.2E-06 51.0 2.5 25 64-88 16-40 (183)
376 2hf9_A Probable hydrogenase ni 93.3 0.047 1.6E-06 52.4 3.5 25 66-90 38-62 (226)
377 3ihw_A Centg3; RAS, centaurin, 93.3 0.062 2.1E-06 50.2 4.3 25 65-89 19-43 (184)
378 2fg5_A RAB-22B, RAS-related pr 93.3 0.049 1.7E-06 50.9 3.5 26 65-90 22-47 (192)
379 1mh1_A RAC1; GTP-binding, GTPa 93.3 0.054 1.8E-06 49.5 3.7 24 66-89 5-28 (186)
380 3lxw_A GTPase IMAP family memb 93.3 0.048 1.6E-06 54.2 3.6 27 64-90 19-45 (247)
381 2qby_A CDC6 homolog 1, cell di 93.3 0.037 1.3E-06 56.8 2.9 34 66-99 45-83 (386)
382 1r8s_A ADP-ribosylation factor 93.2 0.049 1.7E-06 48.8 3.3 22 68-89 2-23 (164)
383 3reg_A RHO-like small GTPase; 93.2 0.057 1.9E-06 50.4 3.8 28 63-90 20-47 (194)
384 2p5s_A RAS and EF-hand domain 93.1 0.06 2.1E-06 50.6 3.9 27 64-90 26-52 (199)
385 1fzq_A ADP-ribosylation factor 93.1 0.055 1.9E-06 50.3 3.5 25 65-89 15-39 (181)
386 1dek_A Deoxynucleoside monopho 93.0 0.059 2E-06 54.1 3.9 24 67-90 2-25 (241)
387 1ksh_A ARF-like protein 2; sma 93.0 0.049 1.7E-06 50.2 3.1 26 64-89 16-41 (186)
388 1m7b_A RND3/RHOE small GTP-bin 93.0 0.057 1.9E-06 50.0 3.5 24 66-89 7-30 (184)
389 1x3s_A RAS-related protein RAB 93.0 0.061 2.1E-06 49.7 3.7 25 66-90 15-39 (195)
390 3q72_A GTP-binding protein RAD 93.0 0.047 1.6E-06 49.1 2.9 23 67-89 3-25 (166)
391 1v5w_A DMC1, meiotic recombina 93.0 0.086 2.9E-06 55.2 5.3 27 60-89 119-145 (343)
392 2cxx_A Probable GTP-binding pr 93.0 0.04 1.4E-06 50.7 2.4 22 68-89 3-24 (190)
393 1zj6_A ADP-ribosylation factor 93.0 0.058 2E-06 50.0 3.5 26 64-89 14-39 (187)
394 3b1v_A Ferrous iron uptake tra 92.9 0.052 1.8E-06 55.1 3.4 24 66-89 3-26 (272)
395 3oes_A GTPase rhebl1; small GT 92.9 0.059 2E-06 50.8 3.5 25 66-90 24-48 (201)
396 3bwd_D RAC-like GTP-binding pr 92.9 0.062 2.1E-06 49.0 3.6 24 66-89 8-31 (182)
397 4tmk_A Protein (thymidylate ki 92.9 0.045 1.5E-06 53.8 2.7 24 67-90 4-27 (213)
398 2atv_A RERG, RAS-like estrogen 92.9 0.07 2.4E-06 49.9 4.0 25 65-89 27-51 (196)
399 1zd9_A ADP-ribosylation factor 92.8 0.072 2.5E-06 49.6 4.0 24 66-89 22-45 (188)
400 2h17_A ADP-ribosylation factor 92.8 0.048 1.6E-06 50.4 2.7 25 65-89 20-44 (181)
401 3c5c_A RAS-like protein 12; GD 92.8 0.072 2.5E-06 49.7 4.0 26 64-89 19-44 (187)
402 3cbq_A GTP-binding protein REM 92.8 0.054 1.8E-06 51.2 3.1 26 63-88 20-45 (195)
403 2p65_A Hypothetical protein PF 92.8 0.047 1.6E-06 49.8 2.6 23 68-90 45-67 (187)
404 2fh5_B SR-beta, signal recogni 92.8 0.062 2.1E-06 50.9 3.5 26 65-90 6-31 (214)
405 3h4m_A Proteasome-activating n 92.7 0.086 2.9E-06 52.6 4.6 23 68-90 53-75 (285)
406 4bas_A ADP-ribosylation factor 92.7 0.052 1.8E-06 50.4 2.7 26 64-89 15-40 (199)
407 2bcg_Y Protein YP2, GTP-bindin 92.7 0.073 2.5E-06 50.1 3.8 26 65-90 7-32 (206)
408 3t15_A Ribulose bisphosphate c 92.6 0.052 1.8E-06 55.4 2.9 27 64-90 34-60 (293)
409 2qz4_A Paraplegin; AAA+, SPG7, 92.6 0.079 2.7E-06 51.9 4.1 23 68-90 41-63 (262)
410 3cph_A RAS-related protein SEC 92.6 0.076 2.6E-06 50.0 3.8 24 66-89 20-43 (213)
411 2ew1_A RAS-related protein RAB 92.6 0.073 2.5E-06 50.8 3.7 26 65-90 25-50 (201)
412 1jal_A YCHF protein; nucleotid 92.6 0.091 3.1E-06 56.0 4.8 22 68-89 4-25 (363)
413 2iwr_A Centaurin gamma 1; ANK 92.5 0.064 2.2E-06 49.0 3.1 24 66-89 7-30 (178)
414 1zbd_A Rabphilin-3A; G protein 92.5 0.072 2.5E-06 49.9 3.5 24 66-89 8-31 (203)
415 3tmk_A Thymidylate kinase; pho 92.5 0.053 1.8E-06 53.5 2.7 25 67-91 6-30 (216)
416 3i8s_A Ferrous iron transport 92.5 0.063 2.2E-06 54.2 3.3 24 66-89 3-26 (274)
417 2cjw_A GTP-binding protein GEM 92.4 0.089 3E-06 49.6 4.0 24 66-89 6-29 (192)
418 2e87_A Hypothetical protein PH 92.4 0.049 1.7E-06 57.1 2.3 26 65-90 166-191 (357)
419 2qu8_A Putative nucleolar GTP- 92.3 0.066 2.2E-06 51.8 3.1 26 64-89 27-52 (228)
420 2o52_A RAS-related protein RAB 92.3 0.068 2.3E-06 50.5 3.1 25 65-89 24-48 (200)
421 2j1l_A RHO-related GTP-binding 92.3 0.07 2.4E-06 51.0 3.2 26 64-89 32-57 (214)
422 3dz8_A RAS-related protein RAB 92.3 0.079 2.7E-06 49.3 3.5 25 66-90 23-47 (191)
423 2f7s_A C25KG, RAS-related prot 92.3 0.083 2.8E-06 50.2 3.6 27 64-90 23-49 (217)
424 2il1_A RAB12; G-protein, GDP, 92.3 0.088 3E-06 49.3 3.8 25 65-89 25-49 (192)
425 4dhe_A Probable GTP-binding pr 92.3 0.037 1.3E-06 52.7 1.2 24 66-89 29-52 (223)
426 3def_A T7I23.11 protein; chlor 92.2 0.079 2.7E-06 52.9 3.6 27 64-90 34-60 (262)
427 3a1s_A Iron(II) transport prot 92.2 0.077 2.6E-06 53.2 3.5 24 66-89 5-28 (258)
428 1h65_A Chloroplast outer envel 92.1 0.078 2.7E-06 53.1 3.4 27 63-89 36-62 (270)
429 1yrb_A ATP(GTP)binding protein 92.1 0.09 3.1E-06 51.6 3.8 29 62-90 10-38 (262)
430 3n70_A Transport activator; si 92.1 0.086 2.9E-06 47.8 3.3 23 68-90 26-48 (145)
431 1sxj_D Activator 1 41 kDa subu 92.1 0.031 1.1E-06 57.2 0.4 38 52-90 45-82 (353)
432 2h57_A ADP-ribosylation factor 92.0 0.051 1.7E-06 50.5 1.8 25 65-89 20-44 (190)
433 2fv8_A H6, RHO-related GTP-bin 92.0 0.088 3E-06 49.9 3.5 25 66-90 25-49 (207)
434 1gwn_A RHO-related GTP-binding 92.0 0.089 3.1E-06 50.3 3.5 25 66-90 28-52 (205)
435 3iby_A Ferrous iron transport 92.0 0.068 2.3E-06 53.6 2.8 22 68-89 3-24 (256)
436 2fu5_C RAS-related protein RAB 92.0 0.066 2.3E-06 49.1 2.4 24 66-89 8-31 (183)
437 2dby_A GTP-binding protein; GD 91.9 0.064 2.2E-06 57.1 2.7 22 68-89 3-24 (368)
438 2q3h_A RAS homolog gene family 91.9 0.088 3E-06 49.3 3.3 25 65-89 19-43 (201)
439 3hjn_A DTMP kinase, thymidylat 91.9 0.076 2.6E-06 51.3 2.9 23 68-90 2-24 (197)
440 3iev_A GTP-binding protein ERA 91.9 0.09 3.1E-06 54.1 3.6 24 66-89 10-33 (308)
441 3llu_A RAS-related GTP-binding 91.9 0.071 2.4E-06 50.1 2.7 29 62-90 16-44 (196)
442 1g8f_A Sulfate adenylyltransfe 91.9 0.071 2.4E-06 59.3 3.0 27 65-91 394-420 (511)
443 2j37_W Signal recognition part 91.9 0.13 4.5E-06 57.0 5.2 37 64-100 99-139 (504)
444 3syl_A Protein CBBX; photosynt 91.8 0.079 2.7E-06 53.4 3.1 24 67-90 68-91 (309)
445 2b6h_A ADP-ribosylation factor 91.8 0.097 3.3E-06 49.2 3.5 25 64-88 27-51 (192)
446 2hup_A RAS-related protein RAB 91.8 0.1 3.5E-06 49.4 3.6 24 66-89 29-52 (201)
447 2chg_A Replication factor C sm 91.8 0.094 3.2E-06 48.9 3.3 22 69-90 41-62 (226)
448 1l8q_A Chromosomal replication 91.8 0.085 2.9E-06 54.0 3.3 23 68-90 39-61 (324)
449 2atx_A Small GTP binding prote 91.7 0.098 3.4E-06 48.6 3.4 24 66-89 18-41 (194)
450 3llm_A ATP-dependent RNA helic 91.7 0.081 2.8E-06 51.7 2.9 26 60-88 73-98 (235)
451 1wf3_A GTP-binding protein; GT 91.7 0.1 3.5E-06 53.7 3.7 23 67-89 8-30 (301)
452 1xwi_A SKD1 protein; VPS4B, AA 91.7 0.14 4.8E-06 53.0 4.8 33 68-100 47-79 (322)
453 2gco_A H9, RHO-related GTP-bin 91.7 0.1 3.5E-06 49.2 3.4 25 66-90 25-49 (201)
454 2r6a_A DNAB helicase, replicat 91.6 0.059 2E-06 58.5 2.0 37 51-90 191-227 (454)
455 2qag_A Septin-2, protein NEDD5 91.6 0.06 2E-06 56.9 2.0 23 68-90 39-61 (361)
456 2axn_A 6-phosphofructo-2-kinas 91.6 0.089 3E-06 58.5 3.4 37 65-101 34-74 (520)
457 2v3c_C SRP54, signal recogniti 91.6 0.063 2.2E-06 58.4 2.2 26 65-90 98-123 (432)
458 1c9k_A COBU, adenosylcobinamid 91.6 0.077 2.6E-06 51.1 2.5 21 69-89 2-22 (180)
459 4gzl_A RAS-related C3 botulinu 91.5 0.11 3.6E-06 49.4 3.5 25 65-89 29-53 (204)
460 1jwy_B Dynamin A GTPase domain 91.5 0.085 2.9E-06 53.5 2.9 23 67-89 25-47 (315)
461 3hws_A ATP-dependent CLP prote 91.5 0.14 4.7E-06 53.5 4.5 23 68-90 53-75 (363)
462 3t5d_A Septin-7; GTP-binding p 91.4 0.1 3.4E-06 52.5 3.3 24 66-89 8-31 (274)
463 1d2n_A N-ethylmaleimide-sensit 91.4 0.14 4.8E-06 51.0 4.3 26 65-90 63-88 (272)
464 1of1_A Thymidine kinase; trans 91.1 0.14 4.7E-06 54.9 4.0 34 65-98 48-81 (376)
465 1e2k_A Thymidine kinase; trans 91.0 0.11 3.9E-06 54.5 3.3 32 66-97 4-35 (331)
466 1p6x_A Thymidine kinase; P-loo 91.0 0.11 3.7E-06 54.7 3.2 25 66-90 7-31 (334)
467 1ofh_A ATP-dependent HSL prote 91.0 0.14 4.7E-06 51.2 3.8 23 68-90 52-74 (310)
468 2dy1_A Elongation factor G; tr 91.0 0.093 3.2E-06 60.0 2.8 24 67-90 10-33 (665)
469 1bif_A 6-phosphofructo-2-kinas 90.9 0.14 4.6E-06 55.9 4.0 27 64-90 37-63 (469)
470 1u94_A RECA protein, recombina 90.9 0.17 5.9E-06 53.5 4.7 38 60-100 60-99 (356)
471 2r62_A Cell division protease 90.9 0.065 2.2E-06 53.0 1.3 22 69-90 47-68 (268)
472 2yc2_C IFT27, small RAB-relate 90.9 0.059 2E-06 50.3 0.9 23 67-89 21-43 (208)
473 4djt_A GTP-binding nuclear pro 90.9 0.056 1.9E-06 51.4 0.8 26 64-89 9-34 (218)
474 2j0v_A RAC-like GTP-binding pr 90.9 0.14 4.7E-06 48.4 3.5 24 66-89 9-32 (212)
475 3cpj_B GTP-binding protein YPT 90.9 0.15 5.3E-06 48.8 3.9 25 66-90 13-37 (223)
476 2x77_A ADP-ribosylation factor 90.9 0.093 3.2E-06 48.6 2.3 25 64-88 20-44 (189)
477 2zts_A Putative uncharacterize 90.8 0.16 5.5E-06 49.0 4.0 26 60-88 27-52 (251)
478 3pfi_A Holliday junction ATP-d 90.7 0.18 6.1E-06 51.6 4.5 24 67-90 56-79 (338)
479 2v1u_A Cell division control p 90.7 0.11 3.9E-06 53.3 2.9 24 67-90 45-68 (387)
480 2ius_A DNA translocase FTSK; n 90.6 0.15 5E-06 56.8 3.9 30 56-88 160-189 (512)
481 2aka_B Dynamin-1; fusion prote 90.5 0.11 3.8E-06 52.0 2.7 24 67-90 27-50 (299)
482 3q3j_B RHO-related GTP-binding 90.5 0.17 5.8E-06 48.5 3.8 24 66-89 27-50 (214)
483 2ce7_A Cell division protein F 90.5 0.13 4.5E-06 56.6 3.4 22 69-90 52-73 (476)
484 2z4s_A Chromosomal replication 90.3 0.14 4.7E-06 55.5 3.3 25 66-90 130-154 (440)
485 3d8b_A Fidgetin-like protein 1 90.3 0.22 7.7E-06 52.0 4.8 33 66-99 117-149 (357)
486 2g3y_A GTP-binding protein GEM 90.3 0.17 5.7E-06 49.2 3.6 24 66-89 37-60 (211)
487 1um8_A ATP-dependent CLP prote 90.2 0.21 7.1E-06 52.3 4.5 23 68-90 74-96 (376)
488 2qby_B CDC6 homolog 3, cell di 90.2 0.16 5.6E-06 52.4 3.6 26 65-90 44-69 (384)
489 4b4t_K 26S protease regulatory 90.1 0.22 7.5E-06 54.2 4.6 33 68-101 208-240 (428)
490 1g41_A Heat shock protein HSLU 90.0 0.21 7.3E-06 54.5 4.5 31 69-100 53-83 (444)
491 2bjv_A PSP operon transcriptio 90.0 0.25 8.5E-06 48.8 4.6 23 68-90 31-53 (265)
492 2zan_A Vacuolar protein sortin 89.8 0.28 9.4E-06 53.1 5.2 34 67-100 168-201 (444)
493 1osn_A Thymidine kinase, VZV-T 89.7 0.17 5.8E-06 53.5 3.3 29 66-94 12-41 (341)
494 2i1q_A DNA repair and recombin 89.6 0.17 5.9E-06 51.9 3.2 27 60-89 95-121 (322)
495 3eie_A Vacuolar protein sortin 89.6 0.22 7.5E-06 51.2 4.0 31 68-99 53-83 (322)
496 2xxa_A Signal recognition part 89.5 0.2 6.9E-06 54.4 3.8 27 64-90 98-124 (433)
497 3bh0_A DNAB-like replicative h 89.4 0.23 7.7E-06 51.3 3.9 36 52-90 57-92 (315)
498 4b4t_J 26S protease regulatory 89.3 0.27 9.2E-06 53.1 4.5 32 69-101 185-216 (405)
499 3u61_B DNA polymerase accessor 89.3 0.25 8.6E-06 50.2 4.1 30 61-90 43-72 (324)
500 3gj0_A GTP-binding nuclear pro 89.2 0.18 6.3E-06 48.0 2.9 25 65-89 14-39 (221)
No 1
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.90 E-value=1.4e-23 Score=221.13 Aligned_cols=195 Identities=18% Similarity=0.176 Sum_probs=158.9
Q ss_pred ecCceeEEeeceeEecc---CCccEEEEEECCCCCcHHHHHHHHHHhCC------CceEEEECCcccccc-----ccccc
Q 006782 46 EKGFFIVIRACQLLAQK---NHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSR-----IIDGN 111 (631)
Q Consensus 46 ~~g~~~vL~~Isl~i~~---gekp~IIGI~GpsGSGKSTLlr~L~~llp------~~G~I~lDg~~~~~~-----~i~~v 111 (631)
-++...+++++...+.. ..+|++|||+||||||||||+++|.+++. .++.|.+|+++.... .....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~ 148 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKR 148 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGG
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhh
Confidence 34444556666655533 35689999999999999999999999862 366799999865431 12234
Q ss_pred cCCCCCCchhhHHHHHHHhhccc-cccccccccccccccCceeeeecCccEEEEeechhcccc-----------ccCCCc
Q 006782 112 FDDPRLTDYDTLLENIRGLKEGK-AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-----------LRPLID 179 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g~-~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dE-----------l~~~lD 179 (631)
+++|..|+...+.+.+..++.|+ .+..|.||+..+.+.++....+.++++||+||++++.++ +.+.+|
T Consensus 149 ~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D 228 (321)
T 3tqc_A 149 KGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFD 228 (321)
T ss_dssp TTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCS
T ss_pred ccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcC
Confidence 66788999999999999999998 899999999999887656667889999999999999865 789999
Q ss_pred EEEEEEcChhhHHHHHHHHHHHHhC---------------CCHHH----HHHHHHhccccchhhcccCCCCCCeEEEeCC
Q 006782 180 LRVSVTGGVHFDLVKRVFRDIQRVG---------------QEPEE----IIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (631)
Q Consensus 180 lkIfVdad~d~rLiRRI~RDv~erG---------------~s~e~----Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (631)
.+|||+++.++++.|++.|+...+| .+.++ +..+|.....|++++||+|++++||+||+.+
T Consensus 229 ~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g 308 (321)
T 3tqc_A 229 FSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKA 308 (321)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEEC
T ss_pred eEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecC
Confidence 9999999999999999999988764 45444 3466777778999999999999999999743
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.89 E-value=6.4e-25 Score=234.80 Aligned_cols=268 Identities=17% Similarity=0.189 Sum_probs=193.4
Q ss_pred CCceeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----
Q 006782 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (631)
Q Consensus 31 ~~~~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----- 104 (631)
..|+++..+...|....+...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Ge---i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQ---IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCC---EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 4566777776666433345679999999999999 99999999999999999999999 89999999997542
Q ss_pred -----ccccccccCCCCCCchhhHHHHHHHhhc--cc--------------cccc-cccccccccccCceeeeecCccEE
Q 006782 105 -----SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIV 162 (631)
Q Consensus 105 -----~~~i~~vfq~p~l~d~~tl~e~L~~L~~--g~--------------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VL 162 (631)
.+.++++||++.+++..|+.+|+..... +. .+.. ...+...++.++|+++++..++++
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL 178 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 2468999999999999999999976421 10 0111 123444567889999999999999
Q ss_pred EEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCC
Q 006782 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (631)
Q Consensus 163 IvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (631)
+.++.+++.|||+..+|.. ....+..+.+++.+ .|.| =++|.++.
T Consensus 179 ~~~P~lLLlDEPTs~LD~~-------~~~~i~~lL~~l~~~~g~T---------------------------ii~vTHdl 224 (366)
T 3tui_C 179 ASNPKVLLCDQATSALDPA-------TTRSILELLKDINRRLGLT---------------------------ILLITHEM 224 (366)
T ss_dssp TTCCSEEEEESTTTTSCHH-------HHHHHHHHHHHHHHHSCCE---------------------------EEEEESCH
T ss_pred hcCCCEEEEECCCccCCHH-------HHHHHHHHHHHHHHhCCCE---------------------------EEEEecCH
Confidence 9999999999999999983 33444455555432 2544 34455555
Q ss_pred CCCCCCCCceeeeccCCcccHHHHHHHhcccccccccceeeeecCCCCCCchhccceeeeee---cCCEEEEEEeeeecC
Q 006782 242 NPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRMRN---RDGKYNLMFEEWVTD 318 (631)
Q Consensus 242 ~p~~~~~n~v~iLKs~~~v~~~~Ik~vL~~~~~~~~~~f~DIYl~pP~~d~~~tde~LRvR~---~dg~~~LtykG~~~d 318 (631)
+....+|+++++|+.++.+..+...+++..+....++.+..-.+..+.+ ......++... ....+.+.|.|....
T Consensus 225 ~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 302 (366)
T 3tui_C 225 DVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIP--EDYQERLQAEPFTDCVPMLRLEFTGQSVD 302 (366)
T ss_dssp HHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHHHHHHHHHHTTCCCC--HHHHHHCBSSCCTTCCEEEEEEEEHHHHS
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHHHhhcccccCc--hhhhhhhccccccCCCceEEEEecCcccc
Confidence 4445678888999999888888889999887666666655322211111 11111111111 233789999999999
Q ss_pred CCeeecceeEeeeehhhHH
Q 006782 319 SPFIISPRITFEVSVRLLG 337 (631)
Q Consensus 319 ~p~isrp~~ef~V~v~il~ 337 (631)
.|.++....+|+|++++++
T Consensus 303 ~~~~~~~~~~~~~~~~il~ 321 (366)
T 3tui_C 303 APLLSETARRFNVNNNIIS 321 (366)
T ss_dssp SCHHHHHHHHHTCEEEEEE
T ss_pred hhHHHHHHHHcCCCeEEEE
Confidence 9998888888888888743
No 3
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.88 E-value=7.4e-23 Score=213.35 Aligned_cols=191 Identities=16% Similarity=0.202 Sum_probs=148.1
Q ss_pred eEEeeceeEe----------------ccCCccEEEEEECCCCCcHHHHHHHHHHhC---CCceEEEE---CCccccc---
Q 006782 51 IVIRACQLLA----------------QKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITM---DNYNDSS--- 105 (631)
Q Consensus 51 ~vL~~Isl~i----------------~~gekp~IIGI~GpsGSGKSTLlr~L~~ll---p~~G~I~l---Dg~~~~~--- 105 (631)
+++++|++.+ ....++.+|||+||||||||||+++|++++ |+.|.|.+ |+++...
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~ 128 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVL 128 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHH
Confidence 4788999877 112233499999999999999999999975 56777777 9986432
Q ss_pred cccccccCCCCCCchhhHHHHHH---Hhhcccc-ccccccccccccccCceeeeecCccEEEEeechhccc---------
Q 006782 106 RIIDGNFDDPRLTDYDTLLENIR---GLKEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE--------- 172 (631)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~---~L~~g~~-I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d--------- 172 (631)
..++++ |.+.+++..++.+++. .+..+.. +.+|.|++..+.+.......+...+++|+||++++.+
T Consensus 129 ~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~ 207 (308)
T 1sq5_A 129 KERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPH 207 (308)
T ss_dssp HHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCC
T ss_pred HhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccc
Confidence 235566 6666555555555554 4555666 8999999999887764444556678999999999986
Q ss_pred --cccCCCcEEEEEEcChhhHHHHHHHHHHHH---------------hCCCHHH----HHHHHHhccccchhhcccCCCC
Q 006782 173 --KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR---------------VGQEPEE----IIHQISETVYPMYKAFIEPDLQ 231 (631)
Q Consensus 173 --El~~~lDlkIfVdad~d~rLiRRI~RDv~e---------------rG~s~e~----Vi~q~~~~v~P~~~~fIeP~k~ 231 (631)
.+.+.+|.+|||++|.++++.|++.|+... +|.+.++ +.+||...++|++.+||+|+++
T Consensus 208 ~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~ 287 (308)
T 1sq5_A 208 HVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRE 287 (308)
T ss_dssp SSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGG
T ss_pred hHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccc
Confidence 678899999999999999999999998642 3888887 4566777789999999999999
Q ss_pred CCeEEEeCCCC
Q 006782 232 TAHIKIINKFN 242 (631)
Q Consensus 232 ~ADiII~N~~~ 242 (631)
.||+||+|+.+
T Consensus 288 ~AD~vI~n~~~ 298 (308)
T 1sq5_A 288 RASLILTKSAN 298 (308)
T ss_dssp GCSEEEEECGG
T ss_pred cCcEEEEeCCC
Confidence 99999987754
No 4
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.86 E-value=1.5e-21 Score=190.13 Aligned_cols=176 Identities=30% Similarity=0.503 Sum_probs=146.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc------cccccccCCCCCCchhhHHHHHHHhhccccccc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV 138 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~------~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~ 138 (631)
+.+|||+||||||||||+++|++++ |..+.+..|.+.... ....+.++.+..++...+.+.+..+..++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEM 85 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcCC
Confidence 3499999999999999999999998 447888888764321 112344556666777778888887777778888
Q ss_pred cccccccccccCceeeeecCccEEEEeechhccccc-cCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q 006782 139 PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL-RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (631)
Q Consensus 139 Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl-~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~ 217 (631)
|.++++.+++.. +.+++..++++++||.+++.|++ ...+|.+||||++.+.++.|++.|+..++|.+...+.|+|...
T Consensus 86 ~~~~~s~g~~~~-~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~ 164 (211)
T 3asz_A 86 PVYDFRAYTRSP-RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQ 164 (211)
T ss_dssp CCEETTTTEECS-SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHT
T ss_pred CcccCcccCCCC-CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 999888776644 45567888999999999999765 5789999999999999999999999888899999999999999
Q ss_pred cccchhhcccCCCCCCeEEEeCCCC
Q 006782 218 VYPMYKAFIEPDLQTAHIKIINKFN 242 (631)
Q Consensus 218 v~P~~~~fIeP~k~~ADiII~N~~~ 242 (631)
+.|+|.+|++|.++.||+||.|+.+
T Consensus 165 ~~~~~~~~~~~~~~~aD~ii~~~~~ 189 (211)
T 3asz_A 165 VKPMHLHFVEPTKRYADVIVPRGGQ 189 (211)
T ss_dssp HHHHHHHTTGGGGGGCSEEEESTTS
T ss_pred hhhhHHHhcccchhcCeEEEeCCCc
Confidence 9999999999999999999998754
No 5
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.86 E-value=1.1e-21 Score=192.07 Aligned_cols=169 Identities=20% Similarity=0.240 Sum_probs=139.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC-C---CceEEEECCcccccc---cccc--ccCCCCCCchhhHHHHHHHhhcccccc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDSSR---IIDG--NFDDPRLTDYDTLLENIRGLKEGKAVQ 137 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll-p---~~G~I~lDg~~~~~~---~i~~--vfq~p~l~d~~tl~e~L~~L~~g~~I~ 137 (631)
.+|||+||||||||||+++|++.+ | ..|.|.+|+++.... ..+. ....+..++...+.+.+..+..++.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~i~ 102 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVI 102 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHCSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcCCcee
Confidence 499999999999999999999998 3 489999999865431 1111 123455667667778888888888899
Q ss_pred ccccccccccccCceeeeecCc-cEEEEeechhcccc-----ccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHH
Q 006782 138 VPIYDFKSSSRIGYRTLEVPSS-RIVIIEGIYALSEK-----LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 211 (631)
Q Consensus 138 ~Pvyd~~~~~rs~~~~~~v~~a-~VLIvEGi~lL~dE-----l~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi 211 (631)
.|.|++..+.. +++.+++..+ +++++||.+++.|+ +.+.+|.+|||+++.+.++.|.+.|+ .++|++.+++.
T Consensus 103 ~p~~d~~~~~~-~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~-~~~g~t~~~~~ 180 (208)
T 3c8u_A 103 YPLFDRARDIA-IAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGLNHDAAV 180 (208)
T ss_dssp EEEEETTTTEE-EEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH-HHTTCCHHHHH
T ss_pred cccCCccccCC-CCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH-HhcCCCHHHHH
Confidence 99999987764 4467788887 99999999997764 47899999999999999888777775 46799999999
Q ss_pred HHHHhccccchhhcccCCCCCCeEEEe
Q 006782 212 HQISETVYPMYKAFIEPDLQTAHIKII 238 (631)
Q Consensus 212 ~q~~~~v~P~~~~fIeP~k~~ADiII~ 238 (631)
++|...++|++ +|++|.+..||+||+
T Consensus 181 ~~~~~~~~~~~-~~i~~~~~~aD~vi~ 206 (208)
T 3c8u_A 181 ARAQGNDLANA-RAIEAARLPADLTWP 206 (208)
T ss_dssp HHHHTHHHHHH-HHHHTTBCCCSEEEC
T ss_pred HHHHhccHHHH-HHHHhCCCCCCEEee
Confidence 99988899987 899999999999995
No 6
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.83 E-value=2e-20 Score=187.92 Aligned_cols=190 Identities=28% Similarity=0.495 Sum_probs=131.8
Q ss_pred ecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC---------CceEEEECCcccc--cc------cc
Q 006782 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---------SIAVITMDNYNDS--SR------II 108 (631)
Q Consensus 46 ~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp---------~~G~I~lDg~~~~--~~------~i 108 (631)
..|...+|+++||.+++|. +|||+||||||||||+++|++.++ ..+.+..|.++.. .. .-
T Consensus 8 ~~~~~~~l~~isl~i~~g~---iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~ 84 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMRPF---LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKG 84 (245)
T ss_dssp ---------------CCSE---EEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTT
T ss_pred cCCCceeecceeccCCCCE---EEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhcc
Confidence 3456678999999999887 999999999999999999999762 2346666654321 10 01
Q ss_pred ccccCCCCCCchhhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhcc-ccccCCCcEEEEEEcC
Q 006782 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGG 187 (631)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~-dEl~~~lDlkIfVdad 187 (631)
.+.|+++..++...+.+.|..+........+.|+...+++... ...+...+++|+||.+++. .++.+.+|.+|+|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th 163 (245)
T 2jeo_A 85 QYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTD 163 (245)
T ss_dssp CCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECC
T ss_pred CCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHHhcCeEEEEECC
Confidence 1345555556655667777666555555666777766666543 3344567899999998875 5777888999999999
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCC
Q 006782 188 VHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (631)
Q Consensus 188 ~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (631)
.+.++.|++.|++ .+|++.+++.++|...++|.+++|++|.++.||+||++.
T Consensus 164 ~~~~~~r~~~r~~-~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~ 215 (245)
T 2jeo_A 164 SDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRG 215 (245)
T ss_dssp HHHHHHHHHHHHT-C---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESS
T ss_pred HHHHHHHHHHHHH-HcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCC
Confidence 9999999999988 779999999999999999999999999999999999754
No 7
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.82 E-value=4.6e-20 Score=193.41 Aligned_cols=177 Identities=17% Similarity=0.185 Sum_probs=139.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC-CC-----ceEEEECCccccc---ccccc--ccCCCCCCchhhHHHHHHHhhccc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDSS---RIIDG--NFDDPRLTDYDTLLENIRGLKEGK 134 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll-p~-----~G~I~lDg~~~~~---~~i~~--vfq~p~l~d~~tl~e~L~~L~~g~ 134 (631)
+.+|||+||||||||||+++|++++ |. .+.|.+|++.... ..+.+ .+..|..++...+.+.|..+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~ 169 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGS 169 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCc
Confidence 3499999999999999999999998 53 5678888775432 11221 123455566667778887777554
Q ss_pred c-ccccccccccccccCceeeeecCccEEEEeechhcc----ccccCCCcEEEEEEcChhhHHHHHHHHHHHH-------
Q 006782 135 A-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR------- 202 (631)
Q Consensus 135 ~-I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~----dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e------- 202 (631)
. ...|.|++..++++......+..+++||+||++++. ..+.+.+|.+|||+++.+++..|++.|.+..
T Consensus 170 ~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~ 249 (312)
T 3aez_A 170 DYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFAD 249 (312)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGS
T ss_pred ccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccC
Confidence 3 667888888888876445556788999999999997 4788999999999999999999999887753
Q ss_pred --------hCCCHHHHH----HHHHhccccchhhcccCCCCCCeEEEeCCCC
Q 006782 203 --------VGQEPEEII----HQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (631)
Q Consensus 203 --------rG~s~e~Vi----~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~ 242 (631)
.|.+.+++. ++|...++|++.+||+|++..||+||+++.+
T Consensus 250 ~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~ 301 (312)
T 3aez_A 250 PESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDAD 301 (312)
T ss_dssp TTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTT
T ss_pred cchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCCC
Confidence 277888766 6777888999999999999999999987643
No 8
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.80 E-value=9.1e-21 Score=202.39 Aligned_cols=196 Identities=13% Similarity=0.101 Sum_probs=143.8
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccc----c-----cccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----S-----SRIIDG 110 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~----~-----~~~i~~ 110 (631)
+++++.++...+|++|||.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|... . .+.+++
T Consensus 8 ~~ls~~y~~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~ 84 (359)
T 3fvq_A 8 GHLSKSFQNTPVLNDISLSLDPGE---ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGY 84 (359)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEE
T ss_pred EeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEE
Confidence 445566678889999999999999 99999999999999999999999 8999999999754 1 256899
Q ss_pred ccCCCCCCchhhHHHHHHHhhcccc----------------ccc-cccccccccccCceeeeecCccEEEEeechhcccc
Q 006782 111 NFDDPRLTDYDTLLENIRGLKEGKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~g~~----------------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dE 173 (631)
+||++.+|+.+++.+|+........ +.. ...+...++.++|+++++..+++++.++.+++.||
T Consensus 85 vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDE 164 (359)
T 3fvq_A 85 LVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDE 164 (359)
T ss_dssp ECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999999999986432110 111 22345567889999999999999999999999999
Q ss_pred ccCCCcEEEEEEcChhhHHHHH-HHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCcee
Q 006782 174 LRPLIDLRVSVTGGVHFDLVKR-VFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTY 252 (631)
Q Consensus 174 l~~~lDlkIfVdad~d~rLiRR-I~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~ 252 (631)
|++.+|.. ....++. +.+..++.|.+. +++.++.+-...++++++
T Consensus 165 Pts~LD~~-------~r~~l~~~l~~~~~~~g~tv---------------------------i~vTHd~~ea~~~aDri~ 210 (359)
T 3fvq_A 165 PFSALDEQ-------LRRQIREDMIAALRANGKSA---------------------------VFVSHDREEALQYADRIA 210 (359)
T ss_dssp TTTTSCHH-------HHHHHHHHHHHHHHHTTCEE---------------------------EEECCCHHHHHHHCSEEE
T ss_pred CcccCCHH-------HHHHHHHHHHHHHHhCCCEE---------------------------EEEeCCHHHHHHHCCEEE
Confidence 99999973 1112222 222223334442 333333333334567777
Q ss_pred eeccCCcccHHHHHHHhcccc
Q 006782 253 ILKSTRPVTVDEIKAVMSKEH 273 (631)
Q Consensus 253 iLKs~~~v~~~~Ik~vL~~~~ 273 (631)
+|+.++.+..+...+++..+.
T Consensus 211 vl~~G~i~~~g~~~el~~~p~ 231 (359)
T 3fvq_A 211 VMKQGRILQTASPHELYRQPA 231 (359)
T ss_dssp EEETTEEEEEECHHHHHHSCS
T ss_pred EEECCEEEEEeCHHHHHhCcc
Confidence 888887776666666666543
No 9
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.79 E-value=1.5e-20 Score=202.21 Aligned_cols=202 Identities=15% Similarity=0.143 Sum_probs=149.3
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~ 114 (631)
+++++.++...+|++|||.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... .+.++++||+
T Consensus 7 ~~l~~~yg~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~ 83 (381)
T 3rlf_A 7 QNVTKAWGEVVVSKDINLDIHEGE---FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 83 (381)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTT
T ss_pred EeEEEEECCEEEEeeeEEEECCCC---EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecC
Confidence 445566678899999999999999 99999999999999999999999 89999999997542 2568999999
Q ss_pred CCCCchhhHHHHHHHhhc--cc--------------cccc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 115 PRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--g~--------------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+.+|+.+++.+|+..... +. .+.. ...+...++.++|+++++..+++++.++.+++.|||+..
T Consensus 84 ~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~ 163 (381)
T 3rlf_A 84 YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (381)
T ss_dssp CCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 999999999999976322 10 0111 224455678899999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHH-HhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~-erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
+|.. ....++.+.+++. +.|.+. ++|.++.+-...+++++++|+.
T Consensus 164 LD~~-------~~~~l~~~l~~l~~~~g~ti---------------------------i~vTHd~~ea~~~aDri~vl~~ 209 (381)
T 3rlf_A 164 LDAA-------LRVQMRIEISRLHKRLGRTM---------------------------IYVTHDQVEAMTLADKIVVLDA 209 (381)
T ss_dssp SCHH-------HHHHHHHHHHHHHHHHCCEE---------------------------EEECSCHHHHHHHCSEEEEEET
T ss_pred CCHH-------HHHHHHHHHHHHHHhCCCEE---------------------------EEEECCHHHHHHhCCEEEEEEC
Confidence 9973 2223334444442 225442 3333333333445677788888
Q ss_pred CCcccHHHHHHHhcccccccccc
Q 006782 257 TRPVTVDEIKAVMSKEHTETTEE 279 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~~~~~~~~~~ 279 (631)
++.+..+...+++..+....+..
T Consensus 210 G~i~~~g~~~~l~~~p~~~~v~~ 232 (381)
T 3rlf_A 210 GRVAQVGKPLELYHYPADRFVAG 232 (381)
T ss_dssp TEEEEEECHHHHHHCCSBHHHHH
T ss_pred CEEEEEeCHHHHHhCCccHHHHH
Confidence 88777777777776655443333
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.78 E-value=1.2e-19 Score=187.06 Aligned_cols=194 Identities=13% Similarity=0.183 Sum_probs=144.1
Q ss_pred ceeEeecC-ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---------ccccc
Q 006782 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (631)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---------~~~i~ 109 (631)
+++++.++ ...+|++|||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++
T Consensus 11 ~~ls~~y~~~~~~L~~isl~i~~Ge---~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig 87 (275)
T 3gfo_A 11 EELNYNYSDGTHALKGINMNIKRGE---VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG 87 (275)
T ss_dssp EEEEEECTTSCEEEEEEEEEEETTS---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEE
T ss_pred EEEEEEECCCCeEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEE
Confidence 44455554 3469999999999999 99999999999999999999999 89999999997542 14689
Q ss_pred cccCCCC-CCchhhHHHHHHHhhcccc----------------ccc-cccccccccccCceeeeecCccEEEEeechhcc
Q 006782 110 GNFDDPR-LTDYDTLLENIRGLKEGKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (631)
Q Consensus 110 ~vfq~p~-l~d~~tl~e~L~~L~~g~~----------------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~ 171 (631)
++||+|. .+...++.+++........ +.. ...+...++.++|+++++..+++++.++.+++.
T Consensus 88 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlL 167 (275)
T 3gfo_A 88 IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLIL 167 (275)
T ss_dssp EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999984 3446799999875432100 111 123444567889999999999999999999999
Q ss_pred ccccCCCcEEEEEEcChhhHHHHHHHHHHH-HhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCc
Q 006782 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNP 250 (631)
Q Consensus 172 dEl~~~lDlkIfVdad~d~rLiRRI~RDv~-erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~ 250 (631)
|||+..+|.. ....+..+.+++. +.|. +=+++.++.+....+|++
T Consensus 168 DEPts~LD~~-------~~~~i~~~l~~l~~~~g~---------------------------tvi~vtHdl~~~~~~~dr 213 (275)
T 3gfo_A 168 DEPTAGLDPM-------GVSEIMKLLVEMQKELGI---------------------------TIIIATHDIDIVPLYCDN 213 (275)
T ss_dssp ECTTTTCCHH-------HHHHHHHHHHHHHHHHCC---------------------------EEEEEESCCSSGGGGCSE
T ss_pred ECccccCCHH-------HHHHHHHHHHHHHhhCCC---------------------------EEEEEecCHHHHHHhCCE
Confidence 9999999983 2333344444433 2232 256677777777778999
Q ss_pred eeeeccCCcccHHHHHHHhcc
Q 006782 251 TYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 251 v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
+++|+.++.+..+...+++..
T Consensus 214 v~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 214 VFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp EEEEETTEEEEEECHHHHTHH
T ss_pred EEEEECCEEEEECCHHHHhcC
Confidence 999999887766666666543
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.78 E-value=1.1e-19 Score=182.90 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=112.0
Q ss_pred eeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc--------
Q 006782 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------- 105 (631)
Q Consensus 35 ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------- 105 (631)
++..+...|........+|++|||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.....
T Consensus 3 ~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 3 KLKNVTKTYKMGEEIIYALKNVNLNIKEGE---FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (235)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEEEeCCCCcceeeEEeeeEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 444444443211113579999999999999 99999999999999999999999 899999999974321
Q ss_pred ---cccccccCCCCCCchhhHHHHHHHhhc-----cc--------------cccccc-c-ccccccccCceeeeecCccE
Q 006782 106 ---RIIDGNFDDPRLTDYDTLLENIRGLKE-----GK--------------AVQVPI-Y-DFKSSSRIGYRTLEVPSSRI 161 (631)
Q Consensus 106 ---~~i~~vfq~p~l~d~~tl~e~L~~L~~-----g~--------------~I~~Pv-y-d~~~~~rs~~~~~~v~~a~V 161 (631)
+.++++||++.+++..++.+++..... +. .+.... + +...++.++|+.+++..+++
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 248999999999999999999975211 00 011111 2 44567788999999999999
Q ss_pred EEEeechhccccccCCCcE
Q 006782 162 VIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 162 LIvEGi~lL~dEl~~~lDl 180 (631)
++.++.+++.|||+..+|.
T Consensus 160 l~~~p~llllDEPts~LD~ 178 (235)
T 3tif_A 160 LANNPPIILADQPTWALDS 178 (235)
T ss_dssp HTTCCSEEEEESTTTTSCH
T ss_pred HHcCCCEEEEeCCcccCCH
Confidence 9999999999999999998
No 12
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.77 E-value=7.9e-20 Score=189.51 Aligned_cols=170 Identities=17% Similarity=0.258 Sum_probs=131.7
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhCC----CceEEEECCcccc-cc----------ccc-cccCC--CCCCchhhHHHH
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS-SR----------IID-GNFDD--PRLTDYDTLLEN 126 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~llp----~~G~I~lDg~~~~-~~----------~i~-~vfq~--p~l~d~~tl~e~ 126 (631)
++.+|||+||+||||||+++.|+..++ ....|+.|+++.. .. ..+ ..+++ +..++...+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~ 83 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV 83 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHH
Confidence 356899999999999999999998762 2678999998752 11 111 24444 777777777888
Q ss_pred HHHhhcccccccccccc-----ccccccCcee---eee-cCccEEEEeechhc----cccccCCCcEEEEEEcChhhHHH
Q 006782 127 IRGLKEGKAVQVPIYDF-----KSSSRIGYRT---LEV-PSSRIVIIEGIYAL----SEKLRPLIDLRVSVTGGVHFDLV 193 (631)
Q Consensus 127 L~~L~~g~~I~~Pvyd~-----~~~~rs~~~~---~~v-~~a~VLIvEGi~lL----~dEl~~~lDlkIfVdad~d~rLi 193 (631)
+..+..++.+..|.|++ ..+.+..+.. ..+ ...+++|+||.+++ ...+.+.+|++|||+++.++++.
T Consensus 84 l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~ 163 (290)
T 1a7j_A 84 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWI 163 (290)
T ss_dssp HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHH
T ss_pred HHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHH
Confidence 88888888889999854 2333322211 123 35789999999998 35688899999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeE
Q 006782 194 KRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHI 235 (631)
Q Consensus 194 RRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADi 235 (631)
||+.||...||.+.+++.++|..+ +|+|.+|++|.++.||+
T Consensus 164 Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~ 204 (290)
T 1a7j_A 164 QKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDI 204 (290)
T ss_dssp HHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSE
T ss_pred HHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCE
Confidence 999999989999999999999888 99999999999999999
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.77 E-value=9.2e-20 Score=194.73 Aligned_cols=197 Identities=16% Similarity=0.167 Sum_probs=143.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~ 114 (631)
+++++.++.+.+|+++||.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... .+.++++||+
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (359)
T 2yyz_A 7 VNLKKYFGKVKAVDGVSFEVKDGE---FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQN 83 (359)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSS
T ss_pred EEEEEEECCEEEEeeeEEEEcCCC---EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecC
Confidence 344555677789999999999999 99999999999999999999999 89999999997532 2568999999
Q ss_pred CCCCchhhHHHHHHHhhccc---------c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 115 PRLTDYDTLLENIRGLKEGK---------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~g~---------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+.+|+.+++.+|+....... . +.. ...+...++.++|+++++..+++++.++.+++.|||++.
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 84 YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp CCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 99999999999998743210 0 111 123444567889999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
+|.. ....++.+.+++.+ .|.+ =+++.++.+.....++.+++|+.
T Consensus 164 LD~~-------~r~~l~~~l~~l~~~~g~t---------------------------vi~vTHd~~~~~~~adri~vl~~ 209 (359)
T 2yyz_A 164 LDAN-------LRMIMRAEIKHLQQELGIT---------------------------SVYVTHDQAEAMTMASRIAVFNQ 209 (359)
T ss_dssp SCHH-------HHHHHHHHHHHHHHHHCCE---------------------------EEEEESCHHHHHHHCSEEEEEET
T ss_pred CCHH-------HHHHHHHHHHHHHHhcCCE---------------------------EEEEcCCHHHHHHhCCEEEEEEC
Confidence 9983 22223333333322 2433 23344443333345677777887
Q ss_pred CCcccHHHHHHHhccccc
Q 006782 257 TRPVTVDEIKAVMSKEHT 274 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~~~~~ 274 (631)
++.+..+...+++..+..
T Consensus 210 G~i~~~g~~~~l~~~p~~ 227 (359)
T 2yyz_A 210 GKLVQYGTPDEVYDSPKN 227 (359)
T ss_dssp TEEEEEECHHHHHHSCSB
T ss_pred CEEEEeCCHHHHHhCccc
Confidence 776655666666665543
No 14
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.77 E-value=1.5e-18 Score=174.96 Aligned_cols=174 Identities=31% Similarity=0.555 Sum_probs=144.3
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhCCC---------ceEEEECCcccc--c-----ccc-ccccCCCCCCchhhHHHH
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPS---------IAVITMDNYNDS--S-----RII-DGNFDDPRLTDYDTLLEN 126 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~llp~---------~G~I~lDg~~~~--~-----~~i-~~vfq~p~l~d~~tl~e~ 126 (631)
.++++|||+|++||||||+++.|+..+.. ...|+.|+++.. . ... .++|++|..++...+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~ 99 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKT 99 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHH
Confidence 45789999999999999999999997721 227888987642 1 111 357888999998888999
Q ss_pred HHHhhccccccccccccccccccCceeeeecCccEEEEeechhc-cccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCC
Q 006782 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (631)
Q Consensus 127 L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL-~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~ 205 (631)
|..+..+..+..|.||+..+.+.. ........+++|+||.+++ .+++.+.+|.+|||+++.++++.|...|+...+|.
T Consensus 100 L~~l~~~~~v~~~~~d~~~~~~~~-~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg~ 178 (252)
T 1uj2_A 100 LKEITEGKTVQIPVYDFVSHSRKE-ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGR 178 (252)
T ss_dssp HHHHHTTCCEEEEEEETTTTEEEE-EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCeeecCccccccccCCC-ceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhCC
Confidence 999888888899999998887653 3334456789999999987 46777789999999999999999988888777899
Q ss_pred CHHHHHHHHHhccccchhhcccCCCCCCeEEEe
Q 006782 206 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (631)
Q Consensus 206 s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~ 238 (631)
+.+++.++|...+.+.|.++++|.++.||+||+
T Consensus 179 ~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~ 211 (252)
T 1uj2_A 179 DLEQILSQYITFVKPAFEEFCLPTKKYADVIIP 211 (252)
T ss_dssp CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred CHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEe
Confidence 999999999998889999999999999999994
No 15
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.77 E-value=5.5e-20 Score=188.05 Aligned_cols=156 Identities=21% Similarity=0.207 Sum_probs=120.6
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---------------
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------------- 104 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------------- 104 (631)
+++++.++...+|++|||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|....
T Consensus 10 ~~l~~~y~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 86 (262)
T 1b0u_A 10 IDLHKRYGGHEVLKGVSLQARAGD---VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKN 86 (262)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHH
T ss_pred eeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChh
Confidence 444555677789999999999999 99999999999999999999999 89999999996542
Q ss_pred -----ccccccccCCCCCCchhhHHHHHHHhh---ccc-------c-------cccc-c-cccccccccCceeeeecCcc
Q 006782 105 -----SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK-------A-------VQVP-I-YDFKSSSRIGYRTLEVPSSR 160 (631)
Q Consensus 105 -----~~~i~~vfq~p~l~d~~tl~e~L~~L~---~g~-------~-------I~~P-v-yd~~~~~rs~~~~~~v~~a~ 160 (631)
.+.++++||++.+++..++.+++.... .+. . +... . .+...++.++|+++++..++
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAr 166 (262)
T 1b0u_A 87 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 166 (262)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHH
T ss_pred hHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHH
Confidence 135899999999999899999997621 110 0 1111 1 24445678889999999999
Q ss_pred EEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCC
Q 006782 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (631)
Q Consensus 161 VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s 206 (631)
+++.++.+++.|||+..+|.. ....+..+.+++.+.|.+
T Consensus 167 aL~~~p~lllLDEPts~LD~~-------~~~~~~~~l~~l~~~g~t 205 (262)
T 1b0u_A 167 ALAMEPDVLLFDEPTSALDPE-------LVGEVLRIMQQLAEEGKT 205 (262)
T ss_dssp HHHTCCSEEEEESTTTTSCHH-------HHHHHHHHHHHHHHTTCC
T ss_pred HHhcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHHhCCCE
Confidence 999999999999999999973 333444555555444544
No 16
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.77 E-value=1.2e-19 Score=193.03 Aligned_cols=143 Identities=18% Similarity=0.166 Sum_probs=120.3
Q ss_pred eEEEECCccccccc---------cccccCCCCCCchhhHHHHHHHhhcc-----------------------------cc
Q 006782 94 AVITMDNYNDSSRI---------IDGNFDDPRLTDYDTLLENIRGLKEG-----------------------------KA 135 (631)
Q Consensus 94 G~I~lDg~~~~~~~---------i~~vfq~p~l~d~~tl~e~L~~L~~g-----------------------------~~ 135 (631)
..|.+|||+..... ....+++|..||...+.+.+..|+.+ ..
T Consensus 157 ~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 2ga8_A 157 QIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPD 236 (359)
T ss_dssp EEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCC
T ss_pred EEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCce
Confidence 36789999765422 24567889999999999999888776 56
Q ss_pred ccccccccccccccCceeeeecCccEEEEeechhccc-----cccCCCc-----EEEEEEcChhhHHHHHHHHHHHHhCC
Q 006782 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLID-----LRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (631)
Q Consensus 136 I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d-----El~~~lD-----lkIfVdad~d~rLiRRI~RDv~erG~ 205 (631)
+..|.||+..+.+........+..+++|+||+++|.+ ++++++| ++|||++|.++++.|.+.|++. +|+
T Consensus 237 v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~-~Gl 315 (359)
T 2ga8_A 237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQ-SGL 315 (359)
T ss_dssp EEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHH-TTS
T ss_pred EeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhc-cCC
Confidence 8899999999988775444344479999999999886 3667899 9999999999999999999985 699
Q ss_pred --CHHHHHHHHHhccccchhhcccCCCCCCeEEEe
Q 006782 206 --EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (631)
Q Consensus 206 --s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~ 238 (631)
+.+++.++|...+.|+. +||+|++..||+|+.
T Consensus 316 ~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~ 349 (359)
T 2ga8_A 316 VTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH 349 (359)
T ss_dssp CSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred CCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence 99999999999999988 899999999999975
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.77 E-value=1.2e-19 Score=194.68 Aligned_cols=197 Identities=15% Similarity=0.178 Sum_probs=137.1
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~ 114 (631)
+++++.++.+.+|+++||.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... .+.++++||+
T Consensus 15 ~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 91 (372)
T 1v43_A 15 ENLTKRFGNFTAVNKLNLTIKDGE---FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 91 (372)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEEEEECCEEEEeeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecC
Confidence 445566677789999999999999 99999999999999999999999 89999999997532 2568999999
Q ss_pred CCCCchhhHHHHHHHhhc--cc-------c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 115 PRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--g~-------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+.+|+.+++.+|+..... +. . +.. ...+...++.++|+++++..+++++.++.+++.|||++.
T Consensus 92 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 171 (372)
T 1v43_A 92 YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171 (372)
T ss_dssp -----CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 999999999999986322 10 0 111 123444567899999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
+|.. ....++.+.+++.+ .|.+ =+++.++.+-....++.+++|+.
T Consensus 172 LD~~-------~r~~l~~~l~~l~~~~g~t---------------------------vi~vTHd~~~a~~~adri~vl~~ 217 (372)
T 1v43_A 172 LDAK-------LRVAMRAEIKKLQQKLKVT---------------------------TIYVTHDQVEAMTMGDRIAVMNR 217 (372)
T ss_dssp SCHH-------HHHHHHHHHHHHHHHHTCE---------------------------EEEEESCHHHHHHHCSEEEEEET
T ss_pred CCHH-------HHHHHHHHHHHHHHhCCCE---------------------------EEEEeCCHHHHHHhCCEEEEEEC
Confidence 9973 22223333333322 2433 23333443332345677777877
Q ss_pred CCcccHHHHHHHhccccc
Q 006782 257 TRPVTVDEIKAVMSKEHT 274 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~~~~~ 274 (631)
++.+..+...+++..+..
T Consensus 218 G~i~~~g~~~~l~~~p~~ 235 (372)
T 1v43_A 218 GQLLQIGSPTEVYLRPNS 235 (372)
T ss_dssp TEEEEEECHHHHHHCCSB
T ss_pred CEEEEeCCHHHHHhCccc
Confidence 776655666666665433
No 18
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.76 E-value=2.4e-18 Score=178.63 Aligned_cols=176 Identities=18% Similarity=0.313 Sum_probs=132.5
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHHhC-CC-----ceEE-EECCcccccc---cccc---------ccCCCCCCchhhH
Q 006782 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVI-TMDNYNDSSR---IIDG---------NFDDPRLTDYDTL 123 (631)
Q Consensus 63 gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~-----~G~I-~lDg~~~~~~---~i~~---------vfq~p~l~d~~tl 123 (631)
..++.+|||+|++|||||||++.|.+.+ +. ...+ .+|+|+.... .+.+ .+..|..++...+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHH
Confidence 3557899999999999999999999998 31 4556 9999865431 1111 1235888998899
Q ss_pred HHHHHHhhcc------cccccccccccc----ccccCc-eeeeecCccEEEEeechhccc-c------------------
Q 006782 124 LENIRGLKEG------KAVQVPIYDFKS----SSRIGY-RTLEVPSSRIVIIEGIYALSE-K------------------ 173 (631)
Q Consensus 124 ~e~L~~L~~g------~~I~~Pvyd~~~----~~rs~~-~~~~v~~a~VLIvEGi~lL~d-E------------------ 173 (631)
.+.|..+..| ..+..|.|++.. +++.+. ....+ +++|||+||++++++ +
T Consensus 108 ~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~n 186 (290)
T 1odf_A 108 QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVN 186 (290)
T ss_dssp HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHHH
T ss_pred HHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHHH
Confidence 9999999887 678899999998 676542 34455 789999999988654 3
Q ss_pred ---------ccCCCcEE---EEEEcChhhHHHH-HHHH--HH-HHh--CCCHHHHHHHHHhccccchhhcccCCC-----
Q 006782 174 ---------LRPLIDLR---VSVTGGVHFDLVK-RVFR--DI-QRV--GQEPEEIIHQISETVYPMYKAFIEPDL----- 230 (631)
Q Consensus 174 ---------l~~~lDlk---IfVdad~d~rLiR-RI~R--Dv-~er--G~s~e~Vi~q~~~~v~P~~~~fIeP~k----- 230 (631)
+++.+|++ |||+++.+.++.| |+.| ++ .++ |++.+++ .+|..+++|+|+.|++|..
T Consensus 187 ~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v-~~~~~~~~p~y~~~~~~~~~~~~~ 265 (290)
T 1odf_A 187 AKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQV-HAFVDRYMPSYKLYLNDFVRSESL 265 (290)
T ss_dssp HHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHH-HHHHHTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHH-HHHHHHhcchHHHHhHHHHHhccC
Confidence 35556666 9999988888877 8888 53 346 9999996 6788999999887765532
Q ss_pred -CCCeEEEeCC
Q 006782 231 -QTAHIKIINK 240 (631)
Q Consensus 231 -~~ADiII~N~ 240 (631)
+.||+||.-+
T Consensus 266 ~~~adlvl~~~ 276 (290)
T 1odf_A 266 GSIATLTLGID 276 (290)
T ss_dssp SSSEEEEEEEC
T ss_pred CCCCCEEEEEC
Confidence 3799998633
No 19
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.76 E-value=1.2e-19 Score=194.69 Aligned_cols=197 Identities=17% Similarity=0.135 Sum_probs=142.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------cccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRII 108 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i 108 (631)
+++++.++...+|++|||.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... .+.+
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~i 83 (372)
T 1g29_1 7 VDVWKVFGEVTAVREMSLEVKDGE---FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83 (372)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred EeEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCE
Confidence 345555677789999999999999 99999999999999999999999 89999999996421 2468
Q ss_pred ccccCCCCCCchhhHHHHHHHhhc--cc-------c-------ccc-cccccccccccCceeeeecCccEEEEeechhcc
Q 006782 109 DGNFDDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (631)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~--g~-------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~ 171 (631)
+++||++.+|+.+++.+|+..... +. . +.. ...+...++.++|+++++..+++++.++.+++.
T Consensus 84 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 163 (372)
T 1g29_1 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLM 163 (372)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999976321 10 0 111 123444567889999999999999999999999
Q ss_pred ccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCc
Q 006782 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNP 250 (631)
Q Consensus 172 dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~ 250 (631)
|||++.+|.. ....++.+.+++.+ .|.+ =+++.++.+-...+++.
T Consensus 164 DEP~s~LD~~-------~r~~l~~~l~~l~~~~g~t---------------------------vi~vTHd~~~a~~~adr 209 (372)
T 1g29_1 164 DEPLSNLDAK-------LRVRMRAELKKLQRQLGVT---------------------------TIYVTHDQVEAMTMGDR 209 (372)
T ss_dssp ECTTTTSCHH-------HHHHHHHHHHHHHHHHTCE---------------------------EEEEESCHHHHHHHCSE
T ss_pred CCCCccCCHH-------HHHHHHHHHHHHHHhcCCE---------------------------EEEECCCHHHHHHhCCE
Confidence 9999999983 22223333333322 2433 23334443333345677
Q ss_pred eeeeccCCcccHHHHHHHhccccc
Q 006782 251 TYILKSTRPVTVDEIKAVMSKEHT 274 (631)
Q Consensus 251 v~iLKs~~~v~~~~Ik~vL~~~~~ 274 (631)
+++|+.++.+..+...+++..+..
T Consensus 210 i~vl~~G~i~~~g~~~~l~~~p~~ 233 (372)
T 1g29_1 210 IAVMNRGVLQQVGSPDEVYDKPAN 233 (372)
T ss_dssp EEEEETTEEEEEECHHHHHHSCSB
T ss_pred EEEEeCCEEEEeCCHHHHHhCccc
Confidence 777877776655666666665433
No 20
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.76 E-value=1.3e-19 Score=193.87 Aligned_cols=196 Identities=16% Similarity=0.190 Sum_probs=141.7
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~ 114 (631)
+++++.++.+.+|++|||.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... .+.++++||+
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (362)
T 2it1_A 7 ENIVKKFGNFTALNNINLKIKDGE---FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQN 83 (362)
T ss_dssp EEEEEESSSSEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTT
T ss_pred EeEEEEECCEEEEEeeEEEECCCC---EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecC
Confidence 344555666789999999999999 99999999999999999999999 89999999997532 2568999999
Q ss_pred CCCCchhhHHHHHHHhhc--c---c----c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 115 PRLTDYDTLLENIRGLKE--G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--g---~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+.+|+.+++.+|+..... + . . +.. ...+...++.++|+++++..+++++.++.+++.|||++.
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (362)
T 2it1_A 84 WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSN 163 (362)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGG
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 999999999999976321 1 0 0 111 123444567889999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
+|.. ....++.+.+++.+ .|.+ =+++.++.+-....++.+++|+.
T Consensus 164 LD~~-------~r~~l~~~l~~l~~~~g~t---------------------------vi~vTHd~~~a~~~adri~vl~~ 209 (362)
T 2it1_A 164 LDAL-------LRLEVRAELKRLQKELGIT---------------------------TVYVTHDQAEALAMADRIAVIRE 209 (362)
T ss_dssp SCHH-------HHHHHHHHHHHHHHHHTCE---------------------------EEEEESCHHHHHHHCSEEEEEET
T ss_pred CCHH-------HHHHHHHHHHHHHHhCCCE---------------------------EEEECCCHHHHHHhCCEEEEEEC
Confidence 9973 22223333333322 2433 23333443332345667777877
Q ss_pred CCcccHHHHHHHhcccc
Q 006782 257 TRPVTVDEIKAVMSKEH 273 (631)
Q Consensus 257 ~~~v~~~~Ik~vL~~~~ 273 (631)
++.+..+...+++.++.
T Consensus 210 G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 210 GEILQVGTPDEVYYKPK 226 (362)
T ss_dssp TEEEEEECHHHHHHSCS
T ss_pred CEEEEEcCHHHHHhCcc
Confidence 77665566666665543
No 21
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.76 E-value=1.1e-19 Score=186.26 Aligned_cols=194 Identities=16% Similarity=0.153 Sum_probs=137.8
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---------cccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDG 110 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---------~~~i~~ 110 (631)
+++++.++...+|++|||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|
T Consensus 28 ~~l~~~y~~~~vL~~vsl~i~~Ge---i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~ 104 (263)
T 2olj_A 28 HQLKKSFGSLEVLKGINVHIREGE---VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGM 104 (263)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEE
T ss_pred EeEEEEECCEEEEEeeEEEEcCCC---EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEE
Confidence 445566677789999999999999 99999999999999999999999 89999999997542 135899
Q ss_pred ccCCCCCCchhhHHHHHHHhh---ccc-------c-------ccc-cccccccccccCceeeeecCccEEEEeechhccc
Q 006782 111 NFDDPRLTDYDTLLENIRGLK---EGK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~---~g~-------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d 172 (631)
+||++.+++..++.+++.... .+. . +.. ...+...++.++|+++++..+++++.++.+++.|
T Consensus 105 v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLD 184 (263)
T 2olj_A 105 VFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD 184 (263)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 999999999889999997621 110 0 011 1223445678889999999999999999999999
Q ss_pred cccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCcee
Q 006782 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTY 252 (631)
Q Consensus 173 El~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~ 252 (631)
||+..+|.. ....+..+.+++.+.|.++ +++.++.+.....|+.++
T Consensus 185 EPts~LD~~-------~~~~~~~~l~~l~~~g~tv---------------------------i~vtHd~~~~~~~~d~v~ 230 (263)
T 2olj_A 185 EPTSALDPE-------MVGEVLSVMKQLANEGMTM---------------------------VVVTHEMGFAREVGDRVL 230 (263)
T ss_dssp STTTTSCHH-------HHHHHHHHHHHHHHTTCEE---------------------------EEECSCHHHHHHHCSEEE
T ss_pred CCcccCCHH-------HHHHHHHHHHHHHhCCCEE---------------------------EEEcCCHHHHHHhCCEEE
Confidence 999999983 3333444444443334332 233333322233466666
Q ss_pred eeccCCcccHHHHHHHhcc
Q 006782 253 ILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 253 iLKs~~~v~~~~Ik~vL~~ 271 (631)
+|+.++.+..+...+++..
T Consensus 231 ~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 231 FMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp EEETTEEEEEECHHHHHHS
T ss_pred EEECCEEEEECCHHHHHhC
Confidence 7776665544445555543
No 22
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.76 E-value=3.9e-19 Score=177.58 Aligned_cols=137 Identities=18% Similarity=0.153 Sum_probs=111.4
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-----------ccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-----------RII 108 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-----------~~i 108 (631)
+++++.++...+|+++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|..... +.+
T Consensus 8 ~~l~~~y~~~~~l~~vsl~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (224)
T 2pcj_A 8 ENIKKVIRGYEILKGISLSVKKGE---FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKL 84 (224)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTC---EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred EeEEEEECCEeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcE
Confidence 445556666789999999999999 99999999999999999999999 899999999975321 358
Q ss_pred ccccCCCCCCchhhHHHHHHHhhc--c---c----c-------ccc-cccccccccccCceeeeecCccEEEEeechhcc
Q 006782 109 DGNFDDPRLTDYDTLLENIRGLKE--G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (631)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~--g---~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~ 171 (631)
+++||++.+++..++.+++..... + . . +.. +..+...++.++|+++++..+++++.++.+++.
T Consensus 85 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 164 (224)
T 2pcj_A 85 GFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFA 164 (224)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999998999999865321 1 0 0 011 122344567888999999999999999999999
Q ss_pred ccccCCCcE
Q 006782 172 EKLRPLIDL 180 (631)
Q Consensus 172 dEl~~~lDl 180 (631)
|||+..+|.
T Consensus 165 DEPt~~LD~ 173 (224)
T 2pcj_A 165 DEPTGNLDS 173 (224)
T ss_dssp ESTTTTCCH
T ss_pred eCCCCCCCH
Confidence 999999997
No 23
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.76 E-value=1.7e-19 Score=191.95 Aligned_cols=196 Identities=16% Similarity=0.183 Sum_probs=141.2
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDP 115 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~p 115 (631)
++++.++.. +|+++||.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... .+.++++||++
T Consensus 6 ~l~~~y~~~-~l~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~ 81 (348)
T 3d31_A 6 SLSRKWKNF-SLDNLSLKVESGE---YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNY 81 (348)
T ss_dssp EEEEECSSC-EEEEEEEEECTTC---EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTC
T ss_pred EEEEEECCE-EEeeeEEEEcCCC---EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCc
Confidence 344555656 9999999999999 99999999999999999999999 89999999997542 25689999999
Q ss_pred CCCchhhHHHHHHHhhc--c--c--cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEE
Q 006782 116 RLTDYDTLLENIRGLKE--G--K--AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~--g--~--~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlk 181 (631)
.+|+.+++.+|+..... + . .+ .. ...+...++.++|+++++..+++++.++.+++.|||++.+|..
T Consensus 82 ~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~ 161 (348)
T 3d31_A 82 SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161 (348)
T ss_dssp CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHH
T ss_pred ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 99999999999976321 1 0 11 11 1234445678899999999999999999999999999999983
Q ss_pred EEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCcc
Q 006782 182 VSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPV 260 (631)
Q Consensus 182 IfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~v 260 (631)
....++.+.+++.+ .|.+ =+++.++.+-....++.+++|+.++.+
T Consensus 162 -------~~~~l~~~l~~l~~~~g~t---------------------------ii~vTHd~~~~~~~adri~vl~~G~i~ 207 (348)
T 3d31_A 162 -------TQENAREMLSVLHKKNKLT---------------------------VLHITHDQTEARIMADRIAVVMDGKLI 207 (348)
T ss_dssp -------HHHHHHHHHHHHHHHTTCE---------------------------EEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred -------HHHHHHHHHHHHHHhcCCE---------------------------EEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 22233333343322 2433 233334333223456677777777666
Q ss_pred cHHHHHHHhcccccc
Q 006782 261 TVDEIKAVMSKEHTE 275 (631)
Q Consensus 261 ~~~~Ik~vL~~~~~~ 275 (631)
..+...+++.++...
T Consensus 208 ~~g~~~~~~~~p~~~ 222 (348)
T 3d31_A 208 QVGKPEEIFEKPVEG 222 (348)
T ss_dssp EEECHHHHHSSCCTT
T ss_pred EECCHHHHHhCcccH
Confidence 556666666655443
No 24
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.76 E-value=3.9e-19 Score=179.37 Aligned_cols=137 Identities=14% Similarity=0.113 Sum_probs=111.3
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~v 111 (631)
+++++.++...+|+++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|+
T Consensus 10 ~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 10 QSLHVYYGAIHAIKGIDLKVPRGQ---IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EeEEEEECCeeEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEE
Confidence 445556666789999999999999 99999999999999999999999 89999999997542 1248999
Q ss_pred cCCCCCCchhhHHHHHHHhh-cc---cc----c--------cc-cccccccccccCceeeeecCccEEEEeechhccccc
Q 006782 112 FDDPRLTDYDTLLENIRGLK-EG---KA----V--------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~-~g---~~----I--------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl 174 (631)
||++.+++..++.+++.... .. .. + .. ...+...++.++|+++++..+++++.++.+++.|||
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred ecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 99999999899999997642 11 00 0 01 112333456788999999999999999999999999
Q ss_pred cCCCcE
Q 006782 175 RPLIDL 180 (631)
Q Consensus 175 ~~~lDl 180 (631)
+..+|.
T Consensus 167 ts~LD~ 172 (240)
T 1ji0_A 167 SLGLAP 172 (240)
T ss_dssp TTTCCH
T ss_pred cccCCH
Confidence 999997
No 25
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.76 E-value=5.9e-19 Score=179.73 Aligned_cols=184 Identities=14% Similarity=0.191 Sum_probs=136.6
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc--------ccccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~--------~~~i~~v 111 (631)
+++++.++...+|++|||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++++
T Consensus 11 ~~l~~~y~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (257)
T 1g6h_A 11 ENIVKYFGEFKALDGVSISVNKGD---VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRT 87 (257)
T ss_dssp EEEEEEETTEEEEEEECCEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred eeeEEEECCEeeEeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 445566677789999999999999 99999999999999999999999 89999999997532 1358999
Q ss_pred cCCCCCCchhhHHHHHHHhhc----c-----------cc-------c-------cc-cccccccccccCceeeeecCccE
Q 006782 112 FDDPRLTDYDTLLENIRGLKE----G-----------KA-------V-------QV-PIYDFKSSSRIGYRTLEVPSSRI 161 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~----g-----------~~-------I-------~~-Pvyd~~~~~rs~~~~~~v~~a~V 161 (631)
||++.+++..++.+++..... + .. + .. ...+...++.++|+++++..+++
T Consensus 88 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAra 167 (257)
T 1g6h_A 88 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRA 167 (257)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred ccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHH
Confidence 999999988999999976321 1 00 0 00 11233345678899999999999
Q ss_pred EEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCC
Q 006782 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (631)
Q Consensus 162 LIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (631)
++.++.+++.|||+..+|.. ....+..+.+++.+.|. +=+++.++.
T Consensus 168 L~~~p~lllLDEPts~LD~~-------~~~~l~~~l~~l~~~g~---------------------------tvi~vtHd~ 213 (257)
T 1g6h_A 168 LMTNPKMIVMDEPIAGVAPG-------LAHDIFNHVLELKAKGI---------------------------TFLIIEHRL 213 (257)
T ss_dssp HHTCCSEEEEESTTTTCCHH-------HHHHHHHHHHHHHHTTC---------------------------EEEEECSCC
T ss_pred HHcCCCEEEEeCCccCCCHH-------HHHHHHHHHHHHHHCCC---------------------------EEEEEecCH
Confidence 99999999999999999973 22333333333322222 245556666
Q ss_pred CCCCCCCCceeeeccCCccc
Q 006782 242 NPFTGFQNPTYILKSTRPVT 261 (631)
Q Consensus 242 ~p~~~~~n~v~iLKs~~~v~ 261 (631)
+.....++.+++|+.+..+.
T Consensus 214 ~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 214 DIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp STTGGGCSEEEEEETTEEEE
T ss_pred HHHHHhCCEEEEEECCEEEE
Confidence 66567788888888876554
No 26
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=99.75 E-value=6.9e-18 Score=163.77 Aligned_cols=144 Identities=23% Similarity=0.373 Sum_probs=120.5
Q ss_pred cHHHHHHHhccccccccc--ceeeeecCCCCCCchhccceeeee--ecCCEEEEEEeeeecCCCeeecceeEeeee--hh
Q 006782 261 TVDEIKAVMSKEHTETTE--ETYDIYLLPPGEDPDACQSYLRMR--NRDGKYNLMFEEWVTDSPFIISPRITFEVS--VR 334 (631)
Q Consensus 261 ~~~~Ik~vL~~~~~~~~~--~f~DIYl~pP~~d~~~tde~LRvR--~~dg~~~LtykG~~~d~p~isrp~~ef~V~--v~ 334 (631)
..+.+++.|...+..... .+.|+||..|+. .|||+| ..++.+.||||+|. ++++.++.+.++.|+ -.
T Consensus 18 d~~~~~~~L~~lg~~~~~~~~Q~d~Yfd~p~~------~~LRIR~~~~~~~~~lT~K~p~-~g~~k~~~E~e~~v~d~~~ 90 (179)
T 1yem_A 18 KLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRP------KLLRIRGVHNLKKYYLTFKEIL-DENNEEFYEVEFEIGDFEK 90 (179)
T ss_dssp CHHHHHHHHHTTCCEEEEEEEEEEEEECCCTT------EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEESCHHH
T ss_pred CHHHHHHHHHhcCCccCcceEEEEEEEcCCCC------CEEEEEEEcCCCeEEEEEeccC-CCCccceeEEEEEeCCHHH
Confidence 457888888776543333 355999998865 899999 55889999999999 888877888788776 34
Q ss_pred hHHHHhhcCCeEEEEEEeeeeEeecCcEEEEeecccccCcceEEEEecc------HHHHHHHHHHcCCCCC-ccchhhHH
Q 006782 335 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD------RLYVKYVGEQLGLDGS-YVPRTYIE 407 (631)
Q Consensus 335 il~GL~~LGy~~~a~v~k~re~y~~~~~~i~lD~ve~Lg~~FveI~g~~------~~~v~~~~~~Lgl~g~-~i~kSYLE 407 (631)
+...|..|||.+.+.+.|.|..|..++++|+||+++||| .|+||+... ++.+.+++++|||..+ .+++||+|
T Consensus 91 ~~~iL~~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~lG-~f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY~e 169 (179)
T 1yem_A 91 AVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIG-DFVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLE 169 (179)
T ss_dssp HHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTT
T ss_pred HHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEecCCCC-CEEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhHHH
Confidence 556678999999999999999999999999999999999 999998653 8899999999999986 89999999
Q ss_pred HHHHhh
Q 006782 408 QIQLEK 413 (631)
Q Consensus 408 li~lek 413 (631)
|+ +++
T Consensus 170 Ll-~~~ 174 (179)
T 1yem_A 170 LI-NEL 174 (179)
T ss_dssp TC----
T ss_pred HH-Hhh
Confidence 99 654
No 27
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.75 E-value=1.2e-19 Score=193.46 Aligned_cols=137 Identities=17% Similarity=0.154 Sum_probs=112.5
Q ss_pred eeEeec-CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCC
Q 006782 42 TLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (631)
Q Consensus 42 ~ls~~~-g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~ 114 (631)
++++.+ +.+.+|++|||.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... .+.++++||+
T Consensus 19 ~l~~~y~g~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 95 (355)
T 1z47_A 19 GVEKIYPGGARSVRGVSFQIREGE---MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQN 95 (355)
T ss_dssp EEEECCTTSTTCEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGG
T ss_pred EEEEEEcCCCEEEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecC
Confidence 344555 55678999999999999 99999999999999999999999 89999999997532 3568999999
Q ss_pred CCCCchhhHHHHHHHhhc--c---c----c-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 115 PRLTDYDTLLENIRGLKE--G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--g---~----~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+.+|+.+++.+|+..... + . . +.. ...+...++.++|+++++..+++++.++.+++.|||++.
T Consensus 96 ~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 175 (355)
T 1z47_A 96 YALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAA 175 (355)
T ss_dssp GCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCC
T ss_pred cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 999999999999976321 1 0 0 111 123444567889999999999999999999999999999
Q ss_pred CcEE
Q 006782 178 IDLR 181 (631)
Q Consensus 178 lDlk 181 (631)
+|..
T Consensus 176 LD~~ 179 (355)
T 1z47_A 176 IDTQ 179 (355)
T ss_dssp SSHH
T ss_pred CCHH
Confidence 9983
No 28
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.75 E-value=2.7e-19 Score=183.48 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=141.6
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------ccccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vf 112 (631)
+++++.++...+|++|||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|..... +.+++++
T Consensus 15 ~~l~~~~~~~~vL~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~ 91 (266)
T 4g1u_C 15 SHLHYHVQQQALINDVSLHIASGE---MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMR 91 (266)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTC---EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred EeEEEEeCCeeEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEe
Confidence 455666778899999999999999 99999999999999999999999 899999999975432 3478999
Q ss_pred CCCCCCchhhHHHHHHHhhccc---c-----------ccc-cccccccccccCceeeeecCccEEEE------eechhcc
Q 006782 113 DDPRLTDYDTLLENIRGLKEGK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVII------EGIYALS 171 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~g~---~-----------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIv------EGi~lL~ 171 (631)
|++.++...++.+++....... . +.. ...+...++.++|+++++..+++++. ++.+++.
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLll 171 (266)
T 4g1u_C 92 QYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFL 171 (266)
T ss_dssp SCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEE
T ss_pred cCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEE
Confidence 9999888889999997643210 0 111 12334456788899999999999998 9999999
Q ss_pred ccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCce
Q 006782 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPT 251 (631)
Q Consensus 172 dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v 251 (631)
|||+..+|.. ....+..+.+++.+.+. .+=+++.++.+....+|+++
T Consensus 172 DEPts~LD~~-------~~~~i~~~l~~l~~~~~--------------------------~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 172 DEPTSALDLY-------HQQHTLRLLRQLTRQEP--------------------------LAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp CCCCSSCCHH-------HHHHHHHHHHHHHHHSS--------------------------EEEEEECSCHHHHHHHCSEE
T ss_pred eCccccCCHH-------HHHHHHHHHHHHHHcCC--------------------------CEEEEEEcCHHHHHHhCCEE
Confidence 9999999973 23333344444332211 12344444444444567788
Q ss_pred eeeccCCcccHHHHHHHhc
Q 006782 252 YILKSTRPVTVDEIKAVMS 270 (631)
Q Consensus 252 ~iLKs~~~v~~~~Ik~vL~ 270 (631)
++|+.++.+..+...+++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp EEEETTEEEEEECHHHHCC
T ss_pred EEEECCEEEEEcCHHHHhC
Confidence 8888887766555555554
No 29
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.75 E-value=1.6e-19 Score=192.52 Aligned_cols=194 Identities=18% Similarity=0.190 Sum_probs=138.8
Q ss_pred eeEeecCcee--EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----------cccc
Q 006782 42 TLSFEKGFFI--VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (631)
Q Consensus 42 ~ls~~~g~~~--vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----------~~~i 108 (631)
++++.++.+. +|++|||.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... .+.+
T Consensus 8 ~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~i 84 (353)
T 1oxx_K 8 NVSKVFKKGKVVALDNVNINIENGE---RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI 84 (353)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECTTC---EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCE
T ss_pred eEEEEECCEeeeeEeceEEEECCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCE
Confidence 3444555566 9999999999999 99999999999999999999999 89999999996431 2468
Q ss_pred ccccCCCCCCchhhHHHHHHHhhccc---------c-------ccc-cccccccccccCceeeeecCccEEEEeechhcc
Q 006782 109 DGNFDDPRLTDYDTLLENIRGLKEGK---------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (631)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~g~---------~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~ 171 (631)
+++||++.+|+..++.+|+....... . +.. ...+...++.++|+++++..+++++.++.+++.
T Consensus 85 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLL 164 (353)
T 1oxx_K 85 GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLL 164 (353)
T ss_dssp EEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999998643210 0 111 123444567889999999999999999999999
Q ss_pred ccccCCCcEEEEEEcChhhHHHHHHHHHHH-HhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCc
Q 006782 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNP 250 (631)
Q Consensus 172 dEl~~~lDlkIfVdad~d~rLiRRI~RDv~-erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~ 250 (631)
|||++.+|.. ....++.+.+++. +.|.+. +++.++.+-....++.
T Consensus 165 DEP~s~LD~~-------~r~~l~~~l~~l~~~~g~tv---------------------------i~vTHd~~~~~~~adr 210 (353)
T 1oxx_K 165 DEPFSNLDAR-------MRDSARALVKEVQSRLGVTL---------------------------LVVSHDPADIFAIADR 210 (353)
T ss_dssp ESTTTTSCGG-------GHHHHHHHHHHHHHHHCCEE---------------------------EEEESCHHHHHHHCSE
T ss_pred ECCcccCCHH-------HHHHHHHHHHHHHHhcCCEE---------------------------EEEeCCHHHHHHhCCE
Confidence 9999999983 2233334444432 224432 3333333322344566
Q ss_pred eeeeccCCcccHHHHHHHhccc
Q 006782 251 TYILKSTRPVTVDEIKAVMSKE 272 (631)
Q Consensus 251 v~iLKs~~~v~~~~Ik~vL~~~ 272 (631)
+++|+.++.+..+...+++.++
T Consensus 211 i~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 211 VGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp EEEEETTEEEEEECHHHHHHSC
T ss_pred EEEEECCEEEEEcCHHHHHhCc
Confidence 6777777655545555665544
No 30
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.75 E-value=6.3e-19 Score=179.92 Aligned_cols=192 Identities=13% Similarity=0.156 Sum_probs=138.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc------ccccccccC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFD 113 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq 113 (631)
+++++.++...+|++|||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|+||
T Consensus 19 ~~l~~~y~~~~vl~~vsl~i~~Ge---i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q 95 (256)
T 1vpl_A 19 KDLRKRIGKKEILKGISFEIEEGE---IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE 95 (256)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred EEEEEEECCEEEEEeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcC
Confidence 344555567789999999999999 99999999999999999999999 89999999997542 245899999
Q ss_pred CCCCCchhhHHHHHHHhhc--cc-------cc-------cc-cccccccccccCceeeeecCccEEEEeechhccccccC
Q 006782 114 DPRLTDYDTLLENIRGLKE--GK-------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (631)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--g~-------~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~ 176 (631)
++.+++..++.+++..... +. .+ .. ...+....+.++|+++++..+++++.++.+++.|||+.
T Consensus 96 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 96 EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 175 (256)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999988899999875321 10 00 11 12234456788899999999999999999999999999
Q ss_pred CCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeecc
Q 006782 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (631)
Q Consensus 177 ~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs 256 (631)
.+|.. ....+..+.+++.+.|.+ =+++.++.+....+|+.+++|+.
T Consensus 176 ~LD~~-------~~~~l~~~l~~l~~~g~t---------------------------iiivtHd~~~~~~~~d~v~~l~~ 221 (256)
T 1vpl_A 176 GLDVL-------NAREVRKILKQASQEGLT---------------------------ILVSSHNMLEVEFLCDRIALIHN 221 (256)
T ss_dssp TCCHH-------HHHHHHHHHHHHHHTTCE---------------------------EEEEECCHHHHTTTCSEEEEEET
T ss_pred ccCHH-------HHHHHHHHHHHHHhCCCE---------------------------EEEEcCCHHHHHHHCCEEEEEEC
Confidence 99973 233333444443333332 34444444444556777777877
Q ss_pred CCcccHHHHHHHh
Q 006782 257 TRPVTVDEIKAVM 269 (631)
Q Consensus 257 ~~~v~~~~Ik~vL 269 (631)
++.+..+...+++
T Consensus 222 G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 222 GTIVETGTVEELK 234 (256)
T ss_dssp TEEEEEEEHHHHH
T ss_pred CEEEEecCHHHHH
Confidence 7655444444443
No 31
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=99.75 E-value=8.8e-18 Score=163.01 Aligned_cols=141 Identities=16% Similarity=0.267 Sum_probs=119.0
Q ss_pred HHHHHHHhcccccc---cccceeeeecCCCCCCchhccceeeeeecC--CEEEEEEeeeecCCCeeecceeEeeee--hh
Q 006782 262 VDEIKAVMSKEHTE---TTEETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVS--VR 334 (631)
Q Consensus 262 ~~~Ik~vL~~~~~~---~~~~f~DIYl~pP~~d~~~tde~LRvR~~d--g~~~LtykG~~~d~p~isrp~~ef~V~--v~ 334 (631)
.+.+++.|...+.. ....+.|+||..|..++...+.|||+|..+ |.+.+|||||+.+.. .+++|+ -.
T Consensus 20 ~~~~~~~L~~~g~~~~~~~~~q~d~yfd~p~~~l~~~~~~lRiR~~~~~~~~~~t~Kgp~~~~~------~e~~v~d~~~ 93 (179)
T 3ghx_A 20 LTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGAERC------EASNIEDVSK 93 (179)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSSSBE------EEEECSCHHH
T ss_pred HHHHHHHHHhcCCccccCcceEEEEEEeCCCccHHHCCcEEEEEEecCCCcEEEEEecCCCCcE------EEEEcCCHHH
Confidence 36788888765543 233556999999999999999999999863 689999999998742 255555 35
Q ss_pred hHHHHhhcCCeEEEEEEeeeeEeecCcEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCCC-Cccchh
Q 006782 335 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDG-SYVPRT 404 (631)
Q Consensus 335 il~GL~~LGy~~~a~v~k~re~y~~~~~~i~lD~ve~Lg~~FveI~g~---------~~~~v~~~~~~Lgl~g-~~i~kS 404 (631)
+...|.+|||.+++.++|.|+.|..++++|+||+++||| .|+||+.. .++.+.+++.+|||+. +.+++|
T Consensus 94 ~~~iL~~LG~~~~~~v~K~R~~y~~~~~~i~LD~v~glG-~f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~~s 172 (179)
T 3ghx_A 94 VQSMLATLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRS 172 (179)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSC
T ss_pred HHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEccCCCc-cEEEEEEEcCChhhHHHHHHHHHHHHHHcCcChhhceehh
Confidence 556678999999999999999999999999999999999 99999754 5688999999999998 579999
Q ss_pred hHHHH
Q 006782 405 YIEQI 409 (631)
Q Consensus 405 YLEli 409 (631)
|+||+
T Consensus 173 Y~eLl 177 (179)
T 3ghx_A 173 YRQLL 177 (179)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99998
No 32
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=99.74 E-value=1.6e-17 Score=160.90 Aligned_cols=148 Identities=24% Similarity=0.315 Sum_probs=124.0
Q ss_pred HHHHHHhcccccccc--cceeeeecCCCCCCchhccceeeee----ecCCEEEEEEeeeecCCCeeecceeEeeee---h
Q 006782 263 DEIKAVMSKEHTETT--EETYDIYLLPPGEDPDACQSYLRMR----NRDGKYNLMFEEWVTDSPFIISPRITFEVS---V 333 (631)
Q Consensus 263 ~~Ik~vL~~~~~~~~--~~f~DIYl~pP~~d~~~tde~LRvR----~~dg~~~LtykG~~~d~p~isrp~~ef~V~---v 333 (631)
+.+...|.. ..... ..+.|+||..|+.++...+.|||+| ..++.+.+|||||..+....++++.+..|+ -
T Consensus 12 ~~~~~~L~~-~~~~~~~~~q~d~YfDtp~~~L~~~~~~LRiR~~~~~~~~~~~lT~K~p~~~~~~~~r~E~e~~v~~~~~ 90 (183)
T 2een_A 12 DEIFEKVRE-TFEFMRKEIHEDIYYQHPCRDFSKTDEALRIRIKRFNGHNEVFLTYKGPKIDEKSKTRLEIEVEIQEDVD 90 (183)
T ss_dssp HHHHHHHHT-TSEEEEEEEEEEEEEECSSSCHHHHTCEEEEEEEEETTEEEEEEEEEEEECCTTSCCEEEEEEEECSCHH
T ss_pred HHHHHHHHh-cCccCccEEEEEeEEcCCCccHHhCCeEEEEeeeecCCCCEEEEEECCCcCCCCceeEEEEEEeecCCHH
Confidence 455666655 33222 3455999999999999999999999 567799999999998887777887777775 2
Q ss_pred hhHHHHhhcCCeEEEEEEeeeeEeecC-cEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCCCCccch
Q 006782 334 RLLGGLMALGYTIATILKRSSHIFYDD-RVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDGSYVPR 403 (631)
Q Consensus 334 ~il~GL~~LGy~~~a~v~k~re~y~~~-~~~i~lD~ve~Lg~~FveI~g~---------~~~~v~~~~~~Lgl~g~~i~k 403 (631)
.+...|..+||.+.+.+.|.|+.|..+ ++.|++|++++|| .|+||+.. ..+.+.+++.+||| ++.+++
T Consensus 91 ~~~~~L~~lgl~~~~~~~k~R~~~~~~~~~~v~lD~~~~lg-~f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~ 168 (183)
T 2een_A 91 KYFELLDRLGFKEVLKVVKTREKYYVEKGVTITLDEVEGLG-KFIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFERR 168 (183)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCS
T ss_pred HHHHHHHHCCCeEEEEEEEEEEEEEeCCCEEEEEEeecCCe-eEEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCceec
Confidence 355666779999999999999999999 9999999999999 89999653 46889999999999 899999
Q ss_pred hhHHHHHHhhh
Q 006782 404 TYIEQIQLEKL 414 (631)
Q Consensus 404 SYLEli~lek~ 414 (631)
||+||+ +++.
T Consensus 169 sY~ell-~~~~ 178 (183)
T 2een_A 169 SYLELL-LEKR 178 (183)
T ss_dssp CHHHHH-HHTC
T ss_pred cHHHHH-Hhhh
Confidence 999999 6653
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.73 E-value=1.9e-18 Score=178.41 Aligned_cols=192 Identities=9% Similarity=0.009 Sum_probs=137.1
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc---------cccccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDG 110 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~---------~~~i~~ 110 (631)
+++++.++...+|++|||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.+++
T Consensus 25 ~~l~~~y~~~~vL~~isl~i~~Ge---~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~ 101 (279)
T 2ihy_A 25 DQIGRMKQGKTILKKISWQIAKGD---KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGF 101 (279)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEE
T ss_pred EeEEEEECCEEEEEeeeEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEE
Confidence 344555566789999999999999 99999999999999999999999 89999999997543 245899
Q ss_pred ccCCCCCCc--hhhHHHHHHHhhc------c--c-----cc-------cc-cccccccccccCceeeeecCccEEEEeec
Q 006782 111 NFDDPRLTD--YDTLLENIRGLKE------G--K-----AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (631)
Q Consensus 111 vfq~p~l~d--~~tl~e~L~~L~~------g--~-----~I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi 167 (631)
+||++.++. ..++.+++..... + . .+ .. ...+....+.++|+++++..+++++.++.
T Consensus 102 v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 181 (279)
T 2ihy_A 102 VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQ 181 (279)
T ss_dssp ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 999876432 3589999865210 0 0 00 01 11233445788899999999999999999
Q ss_pred hhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCe--EEEeCCCCCCC
Q 006782 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAH--IKIINKFNPFT 245 (631)
Q Consensus 168 ~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~AD--iII~N~~~p~~ 245 (631)
+++.|||+..+|.. ....+..+.+++.+.|.+ = +++.++.+...
T Consensus 182 lLlLDEPts~LD~~-------~~~~l~~~l~~l~~~g~t---------------------------v~~iivtHd~~~~~ 227 (279)
T 2ihy_A 182 VLILDEPAAGLDFI-------ARESLLSILDSLSDSYPT---------------------------LAMIYVTHFIEEIT 227 (279)
T ss_dssp EEEEESTTTTCCHH-------HHHHHHHHHHHHHHHCTT---------------------------CEEEEEESCGGGCC
T ss_pred EEEEeCCccccCHH-------HHHHHHHHHHHHHHCCCE---------------------------EEEEEEecCHHHHH
Confidence 99999999999973 233333333433322322 3 56666666556
Q ss_pred CCCCceeeeccCCcccHHHHHHHh
Q 006782 246 GFQNPTYILKSTRPVTVDEIKAVM 269 (631)
Q Consensus 246 ~~~n~v~iLKs~~~v~~~~Ik~vL 269 (631)
..++.+++|+.++.+..+...+++
T Consensus 228 ~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 228 ANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp TTCCEEEEEETTEEEEEEEHHHHC
T ss_pred HhCCEEEEEECCEEEEECCHHHHh
Confidence 778888888887665444444444
No 34
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.73 E-value=3.3e-18 Score=175.16 Aligned_cols=185 Identities=15% Similarity=0.159 Sum_probs=135.1
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc----ccccccccCCC-CCCchhhH
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDDP-RLTDYDTL 123 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~----~~~i~~vfq~p-~l~d~~tl 123 (631)
..+|+++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++++||+| ..+...++
T Consensus 20 ~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGE---CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 679999999999999 99999999999999999999999 89999999997542 24689999996 45566799
Q ss_pred HHHHHHhhcc----cc-----------ccc---cccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEE
Q 006782 124 LENIRGLKEG----KA-----------VQV---PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (631)
Q Consensus 124 ~e~L~~L~~g----~~-----------I~~---Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVd 185 (631)
.+++...... .. +.. ...+...+..++|+++++..+++++.++.+++.|||+..+|..
T Consensus 97 ~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~---- 172 (266)
T 2yz2_A 97 FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE---- 172 (266)
T ss_dssp HHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH----
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHH----
Confidence 9999763211 00 011 1123334578889999999999999999999999999999973
Q ss_pred cChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCcccHHHH
Q 006782 186 GGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEI 265 (631)
Q Consensus 186 ad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~v~~~~I 265 (631)
....+..+.+++.+.|. +=+++.++.+.....++.+++|+.+..+..+..
T Consensus 173 ---~~~~l~~~l~~l~~~g~---------------------------tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 222 (266)
T 2yz2_A 173 ---GKTDLLRIVEKWKTLGK---------------------------TVILISHDIETVINHVDRVVVLEKGKKVFDGTR 222 (266)
T ss_dssp ---HHHHHHHHHHHHHHTTC---------------------------EEEEECSCCTTTGGGCSEEEEEETTEEEEEEEH
T ss_pred ---HHHHHHHHHHHHHHcCC---------------------------EEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 22223333333322222 245566666665667888888888876655555
Q ss_pred HHHhcc
Q 006782 266 KAVMSK 271 (631)
Q Consensus 266 k~vL~~ 271 (631)
.+++..
T Consensus 223 ~~~~~~ 228 (266)
T 2yz2_A 223 MEFLEK 228 (266)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 555543
No 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.72 E-value=2.2e-18 Score=174.22 Aligned_cols=133 Identities=20% Similarity=0.198 Sum_probs=107.2
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----ccccccccCCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDP 115 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----~~~i~~vfq~p 115 (631)
++++.++. +|+++||.+++ + ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|+||++
T Consensus 6 ~l~~~y~~--~l~~isl~i~~-e---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 79 (240)
T 2onk_A 6 RAEKRLGN--FRLNVDFEMGR-D---YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDY 79 (240)
T ss_dssp EEEEEETT--EEEEEEEEECS-S---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSC
T ss_pred EEEEEeCC--EEeeeEEEECC-E---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCC
Confidence 34444454 49999999999 8 99999999999999999999999 89999999996532 24689999999
Q ss_pred CCCchhhHHHHHHHhhc--c-----cc-------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 116 RLTDYDTLLENIRGLKE--G-----KA-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~--g-----~~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.+++..++.+++..... + .. +.. ...+...++.++|+++++..+++++.++.+++.|||+..+|.
T Consensus 80 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~ 159 (240)
T 2onk_A 80 ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDL 159 (240)
T ss_dssp CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCH
T ss_pred ccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 99998899999976321 1 00 111 112334567888999999999999999999999999999998
No 36
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.71 E-value=5e-18 Score=172.14 Aligned_cols=136 Identities=17% Similarity=0.302 Sum_probs=107.3
Q ss_pred ceeEeec--CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------cccccc
Q 006782 41 DTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (631)
Q Consensus 41 ~~ls~~~--g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~ 110 (631)
+++++.+ +...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.+++
T Consensus 11 ~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~ 87 (247)
T 2ff7_A 11 RNIRFRYKPDSPVILDNINLSIKQGE---VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 87 (247)
T ss_dssp EEEEEESSTTSCEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred EEEEEEeCCCCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEE
Confidence 3444555 35679999999999999 99999999999999999999999 89999999997542 135899
Q ss_pred ccCCCCCCchhhHHHHHHHhhcccc---c-------cc-------c-----ccccccccccCceeeeecCccEEEEeech
Q 006782 111 NFDDPRLTDYDTLLENIRGLKEGKA---V-------QV-------P-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~g~~---I-------~~-------P-----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~ 168 (631)
+||++.+|+ .++.+++........ + .. | ..+......++|+++++..+++++.++.+
T Consensus 88 v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~l 166 (247)
T 2ff7_A 88 VLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 166 (247)
T ss_dssp ECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999887 599999965321100 0 00 0 01112256788999999999999999999
Q ss_pred hccccccCCCcE
Q 006782 169 ALSEKLRPLIDL 180 (631)
Q Consensus 169 lL~dEl~~~lDl 180 (631)
++.|||+..+|.
T Consensus 167 llLDEPts~LD~ 178 (247)
T 2ff7_A 167 LIFDEATSALDY 178 (247)
T ss_dssp EEECCCCSCCCH
T ss_pred EEEeCCcccCCH
Confidence 999999999997
No 37
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.70 E-value=7e-18 Score=167.92 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=109.3
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccc--cccccccccCCCCCC
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRIIDGNFDDPRLT 118 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~--~~~~i~~vfq~p~l~ 118 (631)
++++.++. .+|+++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|... ..+.++|+||++.++
T Consensus 15 ~ls~~y~~-~il~~vsl~i~~Ge---~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~ 90 (214)
T 1sgw_A 15 DLSVGYDK-PVLERITMTIEKGN---VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVP 90 (214)
T ss_dssp EEEEESSS-EEEEEEEEEEETTC---CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCC
T ss_pred EEEEEeCC-eEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCC
Confidence 34455556 89999999999999 89999999999999999999999 8999999999653 234689999999999
Q ss_pred chhhHHHHHHHhhc--c--cc----------ccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 119 DYDTLLENIRGLKE--G--KA----------VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 119 d~~tl~e~L~~L~~--g--~~----------I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+..++.+++..... + .. +....++....+.++|+++++..+++++.++.+++.|||+..+|.
T Consensus 91 ~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~ 166 (214)
T 1sgw_A 91 RKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166 (214)
T ss_dssp TTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred CCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCH
Confidence 88899999865321 1 00 111111334456788999999999999999999999999999997
No 38
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.70 E-value=9.4e-18 Score=170.21 Aligned_cols=137 Identities=17% Similarity=0.141 Sum_probs=105.2
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh--C-CCceEEEECCccccc--------cccc
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS--------RIID 109 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l--l-p~~G~I~lDg~~~~~--------~~i~ 109 (631)
+++++.++...+|+++||.+++|+ ++||+||||||||||+++|+|+ + |+.|.|.++|..... ..++
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 83 (250)
T 2d2e_A 7 RDLWASIDGETILKGVNLVVPKGE---VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLF 83 (250)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBC
T ss_pred EeEEEEECCEEEEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEE
Confidence 445556666789999999999999 9999999999999999999998 6 789999999975321 2367
Q ss_pred cccCCCCCCchhhHHHHHHHhh---ccc---------cc-------cc--ccccccccc-ccCceeeeecCccEEEEeec
Q 006782 110 GNFDDPRLTDYDTLLENIRGLK---EGK---------AV-------QV--PIYDFKSSS-RIGYRTLEVPSSRIVIIEGI 167 (631)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~---~g~---------~I-------~~--Pvyd~~~~~-rs~~~~~~v~~a~VLIvEGi 167 (631)
++||++.+++..++.+++.... .+. .+ .. ...+...++ .++|+++++..+++++.++.
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~ 163 (250)
T 2d2e_A 84 LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPT 163 (250)
T ss_dssp CCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCS
T ss_pred EeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCC
Confidence 8999999998889999886421 110 01 11 122333456 88999999999999999999
Q ss_pred hhccccccCCCcE
Q 006782 168 YALSEKLRPLIDL 180 (631)
Q Consensus 168 ~lL~dEl~~~lDl 180 (631)
+++.|||+..+|.
T Consensus 164 lllLDEPts~LD~ 176 (250)
T 2d2e_A 164 YAVLDETDSGLDI 176 (250)
T ss_dssp EEEEECGGGTTCH
T ss_pred EEEEeCCCcCCCH
Confidence 9999999999997
No 39
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.70 E-value=5.8e-18 Score=165.00 Aligned_cols=167 Identities=17% Similarity=0.303 Sum_probs=106.6
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEE---CCcccccc---cccccc--C-CCCCCchhhHHHHH-HHhhcc
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSSR---IIDGNF--D-DPRLTDYDTLLENI-RGLKEG 133 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~l---Dg~~~~~~---~i~~vf--q-~p~l~d~~tl~e~L-~~L~~g 133 (631)
++.+|||+|++||||||+++.|++.+ +..|.+.+ |.+..... ..+... + .+..+|...+.+.+ ..+..+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~~~ 100 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKAS 100 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHhcC
Confidence 34599999999999999999999987 44444433 44432210 000000 0 02345555666654 455667
Q ss_pred ccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHH
Q 006782 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (631)
Q Consensus 134 ~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q 213 (631)
..+..|.|++..+.... ........+++|+||.+++.+++.+.+|.+|||++|.++++.|.+.|+ +++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~--------~~~~~~ 171 (201)
T 1rz3_A 101 HQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV--------KQNIQK 171 (201)
T ss_dssp SEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC----------------------CHHH
T ss_pred CccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC--------HHHHHH
Confidence 77888888887443322 233445678999999999988888999999999999999988887776 567778
Q ss_pred HHhccccchhhcccCC--CCCCeEEEeCC
Q 006782 214 ISETVYPMYKAFIEPD--LQTAHIKIINK 240 (631)
Q Consensus 214 ~~~~v~P~~~~fIeP~--k~~ADiII~N~ 240 (631)
|...++|+++.|++|. +..||+||.|+
T Consensus 172 ~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 172 FINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 8777889999998776 68999999876
No 40
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.69 E-value=6.1e-18 Score=177.04 Aligned_cols=191 Identities=18% Similarity=0.234 Sum_probs=135.3
Q ss_pred ceeEeec-CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccc
Q 006782 41 DTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (631)
Q Consensus 41 ~~ls~~~-g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~v 111 (631)
++++|.+ +...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.+||..... +.++++
T Consensus 57 ~~vs~~y~~~~~vL~~isl~i~~Ge---~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v 133 (306)
T 3nh6_A 57 ENVHFSYADGRETLQDVSFTVMPGQ---TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVV 133 (306)
T ss_dssp EEEEEESSTTCEEEEEEEEEECTTC---EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEE
T ss_pred EEEEEEcCCCCceeeeeeEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEE
Confidence 4445555 34679999999999999 89999999999999999999999 899999999975432 468999
Q ss_pred cCCCCCCchhhHHHHHHHhhccc---cc--------------ccc-cccc----ccccccCceeeeecCccEEEEeechh
Q 006782 112 FDDPRLTDYDTLLENIRGLKEGK---AV--------------QVP-IYDF----KSSSRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g~---~I--------------~~P-vyd~----~~~~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
||+|.+|+ .|+.+||....... .+ ..| -|+. .....++|+++++..+++++.++.++
T Consensus 134 ~Q~~~lf~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iL 212 (306)
T 3nh6_A 134 PQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGII 212 (306)
T ss_dssp CSSCCCCS-EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred ecCCccCc-ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999986 59999997533210 00 011 1111 12457889999999999999999999
Q ss_pred ccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCC
Q 006782 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQN 249 (631)
Q Consensus 170 L~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n 249 (631)
+.||+++.+|.. ....+....+++. .+. +=++|.++.+.... ++
T Consensus 213 lLDEPts~LD~~-------~~~~i~~~l~~l~-~~~---------------------------Tvi~itH~l~~~~~-aD 256 (306)
T 3nh6_A 213 LLDEATSALDTS-------NERAIQASLAKVC-ANR---------------------------TTIVVAHRLSTVVN-AD 256 (306)
T ss_dssp EEECCSSCCCHH-------HHHHHHHHHHHHH-TTS---------------------------EEEEECCSHHHHHT-CS
T ss_pred EEECCcccCCHH-------HHHHHHHHHHHHc-CCC---------------------------EEEEEEcChHHHHc-CC
Confidence 999999999973 2222222222221 122 23444444433333 67
Q ss_pred ceeeeccCCcccHHHHHHHhcc
Q 006782 250 PTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 250 ~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
.+++|+.++.+..+...+++..
T Consensus 257 ~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 257 QILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp EEEEEETTEEEEEECHHHHHHH
T ss_pred EEEEEECCEEEEECCHHHHHhc
Confidence 7788888887776666666643
No 41
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.69 E-value=5.1e-18 Score=174.41 Aligned_cols=135 Identities=16% Similarity=0.190 Sum_probs=107.3
Q ss_pred eeEeecCc---eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------ccccc
Q 006782 42 TLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (631)
Q Consensus 42 ~ls~~~g~---~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~ 110 (631)
++++.++. ..+|++|||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|..... +.++|
T Consensus 21 ~l~~~y~~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~ 97 (271)
T 2ixe_A 21 DVSFAYPNHPNVQVLQGLTFTLYPGK---VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAA 97 (271)
T ss_dssp EEEECCTTCTTSCCEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEE
T ss_pred EEEEEeCCCCCceeeEeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEE
Confidence 34444443 678999999999999 99999999999999999999999 899999999975421 35899
Q ss_pred ccCCCCCCchhhHHHHHHHhhcc--c--cc-------c-------cc-----ccccccccccCceeeeecCccEEEEeec
Q 006782 111 NFDDPRLTDYDTLLENIRGLKEG--K--AV-------Q-------VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~g--~--~I-------~-------~P-----vyd~~~~~rs~~~~~~v~~a~VLIvEGi 167 (631)
+||++.+|+ .++.+++...... . .+ . .| ..+......++|+++++..+++++.++.
T Consensus 98 v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 176 (271)
T 2ixe_A 98 VGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPR 176 (271)
T ss_dssp ECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCS
T ss_pred EecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999887 4999999763211 0 00 0 00 1123345678899999999999999999
Q ss_pred hhccccccCCCcE
Q 006782 168 YALSEKLRPLIDL 180 (631)
Q Consensus 168 ~lL~dEl~~~lDl 180 (631)
+++.|||+..+|.
T Consensus 177 lllLDEPts~LD~ 189 (271)
T 2ixe_A 177 LLILDNATSALDA 189 (271)
T ss_dssp EEEEESTTTTCCH
T ss_pred EEEEECCccCCCH
Confidence 9999999999997
No 42
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.68 E-value=9.8e-18 Score=170.65 Aligned_cols=131 Identities=16% Similarity=0.123 Sum_probs=106.3
Q ss_pred ceeEeecC-ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCC
Q 006782 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (631)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~ 118 (631)
+++++.++ ...+|+++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.. .+.++|+||++.++
T Consensus 8 ~~l~~~y~~~~~vl~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~------~~~i~~v~q~~~~~ 78 (253)
T 2nq2_C 8 ENLGFYYQAENFLFQQLNFDLNKGD---ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV------YQSIGFVPQFFSSP 78 (253)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTC---EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE------CSCEEEECSCCCCS
T ss_pred eeEEEEeCCCCeEEEEEEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE------eccEEEEcCCCccC
Confidence 34455555 5679999999999999 99999999999999999999999 89999982 24689999999998
Q ss_pred chhhHHHHHHHhhc---c-----c-c----c-------cc-cccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 119 DYDTLLENIRGLKE---G-----K-A----V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 119 d~~tl~e~L~~L~~---g-----~-~----I-------~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+..++.+++..... + . . + .. ...+...++.++|+++++..+++++.++.+++.|||+..
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~ 158 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSA 158 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTT
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 88899999976421 1 0 0 0 01 112333456788999999999999999999999999999
Q ss_pred CcE
Q 006782 178 IDL 180 (631)
Q Consensus 178 lDl 180 (631)
+|.
T Consensus 159 LD~ 161 (253)
T 2nq2_C 159 LDL 161 (253)
T ss_dssp SCH
T ss_pred CCH
Confidence 998
No 43
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.66 E-value=1.9e-17 Score=169.66 Aligned_cols=136 Identities=12% Similarity=0.118 Sum_probs=106.5
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh--C-CCceEEEECCccccc--------ccccc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS--------RIIDG 110 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l--l-p~~G~I~lDg~~~~~--------~~i~~ 110 (631)
++++.++...+|++|||.+++|+ ++||+||||||||||+++|+|+ . |+.|.|.++|..... ..+++
T Consensus 25 ~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 101 (267)
T 2zu0_C 25 DLHVSVEDKAILRGLSLDVHPGE---VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFM 101 (267)
T ss_dssp EEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEE
T ss_pred eEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEE
Confidence 34455566789999999999999 9999999999999999999998 4 689999999975321 23789
Q ss_pred ccCCCCCCchhhHHHHHHHhh------ccc----------c-------cccc--ccccccc-cccCceeeeecCccEEEE
Q 006782 111 NFDDPRLTDYDTLLENIRGLK------EGK----------A-------VQVP--IYDFKSS-SRIGYRTLEVPSSRIVII 164 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~------~g~----------~-------I~~P--vyd~~~~-~rs~~~~~~v~~a~VLIv 164 (631)
+||++.+++..++.+++.... .+. . +... ..+.... ..++|+++++..+++++.
T Consensus 102 v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~ 181 (267)
T 2zu0_C 102 AFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL 181 (267)
T ss_dssp ECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHH
T ss_pred EccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHh
Confidence 999999998888888775421 010 0 0111 1222333 488899999999999999
Q ss_pred eechhccccccCCCcE
Q 006782 165 EGIYALSEKLRPLIDL 180 (631)
Q Consensus 165 EGi~lL~dEl~~~lDl 180 (631)
++.+++.|||+..+|.
T Consensus 182 ~p~lLlLDEPts~LD~ 197 (267)
T 2zu0_C 182 EPELCILDESDSGLDI 197 (267)
T ss_dssp CCSEEEEESTTTTCCH
T ss_pred CCCEEEEeCCCCCCCH
Confidence 9999999999999997
No 44
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.66 E-value=6e-18 Score=182.52 Aligned_cols=194 Identities=11% Similarity=0.074 Sum_probs=140.0
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc-------ccccccccCCCCCCch
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDY 120 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~ 120 (631)
+...+|++|||.+++|+ +++|+||||||||||+++|++++++.|.|.++|.... .+.++++||++.+|+
T Consensus 32 ~~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~- 107 (390)
T 3gd7_A 32 GGNAILENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS- 107 (390)
T ss_dssp SSCCSEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-
T ss_pred CCeEEeeceeEEEcCCC---EEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-
Confidence 56779999999999999 9999999999999999999999877899999997543 256899999999997
Q ss_pred hhHHHHHHHhhccc---------cccc-ccccccccc-----------ccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 121 DTLLENIRGLKEGK---------AVQV-PIYDFKSSS-----------RIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 121 ~tl~e~L~~L~~g~---------~I~~-Pvyd~~~~~-----------rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
.++.+|+....... .+.. ...+...++ .++|+++++..+++++.++.+++.|||++.+|
T Consensus 108 ~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD 187 (390)
T 3gd7_A 108 GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187 (390)
T ss_dssp EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSC
T ss_pred cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 59999986321110 0011 011222222 78899999999999999999999999999999
Q ss_pred EEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCCc
Q 006782 180 LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRP 259 (631)
Q Consensus 180 lkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~~ 259 (631)
.. ....+...+ .++ ....+=+++.++.+.. ..++++++|+.++.
T Consensus 188 ~~----------~~~~l~~~l-----------~~~--------------~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i 231 (390)
T 3gd7_A 188 PV----------TYQIIRRTL-----------KQA--------------FADCTVILCEARIEAM-LECDQFLVIEENKV 231 (390)
T ss_dssp HH----------HHHHHHHHH-----------HTT--------------TTTSCEEEECSSSGGG-TTCSEEEEEETTEE
T ss_pred HH----------HHHHHHHHH-----------HHH--------------hCCCEEEEEEcCHHHH-HhCCEEEEEECCEE
Confidence 73 111111111 100 0123456666665543 45899999999988
Q ss_pred ccHHHHHHHhccccccccccee
Q 006782 260 VTVDEIKAVMSKEHTETTEETY 281 (631)
Q Consensus 260 v~~~~Ik~vL~~~~~~~~~~f~ 281 (631)
+..+...+++..+....+..|.
T Consensus 232 ~~~g~~~el~~~p~~~~va~f~ 253 (390)
T 3gd7_A 232 RQYDSILELYHYPADRFVAGFI 253 (390)
T ss_dssp EEESSHHHHHHCCSBHHHHHHS
T ss_pred EEECCHHHHHhCCCchHHHhhc
Confidence 8778888888776554444443
No 45
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.66 E-value=1.5e-17 Score=169.17 Aligned_cols=126 Identities=10% Similarity=0.038 Sum_probs=103.8
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccccCCCCCCchhh
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDT 122 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~t 122 (631)
.+|+++||.+++|+ ++||+||||||||||+++|+|++ |+ |.|.++|.... .+.++|+||++.+++..+
T Consensus 14 ~vl~~vsl~i~~Ge---~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGE---ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 57999999999999 99999999999999999999999 88 99999997532 135899999999988889
Q ss_pred HHHHHHHhhc-c---cc-------ccc-cccccccccccCceeeeecCccEEEEeec-------hhccccccCCCcE
Q 006782 123 LLENIRGLKE-G---KA-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI-------YALSEKLRPLIDL 180 (631)
Q Consensus 123 l~e~L~~L~~-g---~~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi-------~lL~dEl~~~lDl 180 (631)
+.+++..... . .. +.. ...+......++|+++++..+++++.++. +++.|||+..+|.
T Consensus 90 v~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~ 166 (249)
T 2qi9_C 90 VWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 166 (249)
T ss_dssp HHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCH
T ss_pred HHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCH
Confidence 9999975321 1 00 011 12233456788899999999999999999 9999999999998
No 46
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.66 E-value=1.1e-17 Score=168.88 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=106.6
Q ss_pred eeEeec-CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------cccccccc
Q 006782 42 TLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNF 112 (631)
Q Consensus 42 ~ls~~~-g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~vf 112 (631)
++++.+ +...+|+++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++++|
T Consensus 6 ~l~~~y~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 82 (243)
T 1mv5_A 6 HVDFAYDDSEQILRDISFEAQPNS---IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVS 82 (243)
T ss_dssp EEEECSSSSSCSEEEEEEEECTTE---EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred EEEEEeCCCCceEEEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEc
Confidence 344444 45678999999999999 99999999999999999999999 89999999996432 24589999
Q ss_pred CCCCCCchhhHHHHHHHh-hcccc---c-------ccc-cc-----------ccccccccCceeeeecCccEEEEeechh
Q 006782 113 DDPRLTDYDTLLENIRGL-KEGKA---V-------QVP-IY-----------DFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 113 q~p~l~d~~tl~e~L~~L-~~g~~---I-------~~P-vy-----------d~~~~~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
|++.+|+. ++.+++... ..... + ... .. +...+..++|+++++..+++++.++.++
T Consensus 83 q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 83 QDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp CSSCCCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred CCCccccc-cHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998874 999998653 11100 0 000 00 1123467889999999999999999999
Q ss_pred ccccccCCCcEE
Q 006782 170 LSEKLRPLIDLR 181 (631)
Q Consensus 170 L~dEl~~~lDlk 181 (631)
+.|||+..+|..
T Consensus 162 lLDEPts~LD~~ 173 (243)
T 1mv5_A 162 MLDEATASLDSE 173 (243)
T ss_dssp EEECCSCSSCSS
T ss_pred EEECCcccCCHH
Confidence 999999999983
No 47
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=99.65 E-value=1.3e-15 Score=147.04 Aligned_cols=140 Identities=16% Similarity=0.261 Sum_probs=114.7
Q ss_pred HHHHHHhcccccc---cccceeeeecCCCCCCchhccceeeeeec--CCEEEEEEeeeecCCCeeecceeEeeee--hhh
Q 006782 263 DEIKAVMSKEHTE---TTEETYDIYLLPPGEDPDACQSYLRMRNR--DGKYNLMFEEWVTDSPFIISPRITFEVS--VRL 335 (631)
Q Consensus 263 ~~Ik~vL~~~~~~---~~~~f~DIYl~pP~~d~~~tde~LRvR~~--dg~~~LtykG~~~d~p~isrp~~ef~V~--v~i 335 (631)
+.+.+.|...... ....+.|+||..|+.++...+.|||+|.. ++..+|||+||... ++.+++|+ -.+
T Consensus 21 ~~~~~~L~~~~~~~~~~~~~q~d~Yfd~p~~~l~~~~~~lRiR~~~~~~~~~lt~kg~~~~------~e~e~~v~~~~~~ 94 (179)
T 3n10_A 21 TTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGAE------RCEASNIEDVSKV 94 (179)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSSS------BEEEEECSCHHHH
T ss_pred HHHHHHHHhcCCccccceEEEEEEEEeCCChhHHhCCceEEEEecCCCceEEEEEcCCccc------cceeeccCCHHHH
Confidence 5566666554322 22334599999999999999999999985 45889999998653 45555555 456
Q ss_pred HHHHhhcCCeEEEEEEeeeeEeecCcEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCCC-Cccchhh
Q 006782 336 LGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDG-SYVPRTY 405 (631)
Q Consensus 336 l~GL~~LGy~~~a~v~k~re~y~~~~~~i~lD~ve~Lg~~FveI~g~---------~~~~v~~~~~~Lgl~g-~~i~kSY 405 (631)
...|..+||.+++.+.|.|+.|..+++.|++|+|++|| +|+||+.. .++.+.+++++|||.. +.+++||
T Consensus 95 ~~~l~~lg~~~~~~~~k~R~~~~~~~~~v~lD~v~~lG-~f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY 173 (179)
T 3n10_A 95 QSMLATLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSY 173 (179)
T ss_dssp HHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCH
T ss_pred HHHHHhCCCeEEEEEEEEEEEEEECCEEEEEEeccCCC-cEEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecH
Confidence 66778999999999999999999999999999999999 99999754 4678999999999986 5799999
Q ss_pred HHHH
Q 006782 406 IEQI 409 (631)
Q Consensus 406 LEli 409 (631)
+|||
T Consensus 174 ~eLL 177 (179)
T 3n10_A 174 RQLL 177 (179)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9998
No 48
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.64 E-value=6.7e-17 Score=165.03 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=101.7
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc-------ccccccccCCCCCCchhh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDT 122 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~t 122 (631)
..+|+++||.+++|+ ++||+||||||||||+++|+++++..|.|.++|.... .+.++|+||++.+|+ .+
T Consensus 33 ~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~t 108 (260)
T 2ghi_A 33 HRTLKSINFFIPSGT---TCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ET 108 (260)
T ss_dssp SCSEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EE
T ss_pred CceeEeeEEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cC
Confidence 468999999999999 9999999999999999999999944899999997542 145899999999886 59
Q ss_pred HHHHHHHhhccc---cc-------c-------ccc-c----ccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 123 LLENIRGLKEGK---AV-------Q-------VPI-Y----DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 123 l~e~L~~L~~g~---~I-------~-------~Pv-y----d~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+.+|+....... .+ . .|. + +......++|+++++..+++++.++.+++.|||+..+|.
T Consensus 109 v~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~ 188 (260)
T 2ghi_A 109 IKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDS 188 (260)
T ss_dssp HHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCH
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 999997532110 00 0 110 1 112356788999999999999999999999999999997
No 49
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=99.64 E-value=2.1e-15 Score=143.64 Aligned_cols=139 Identities=23% Similarity=0.377 Sum_probs=114.7
Q ss_pred HHHHHHhccccccc--ccceeeeecCCCCCCchhccceeeeee--cCCEEEEEEeeeecCCCeeecceeEeeee--hhhH
Q 006782 263 DEIKAVMSKEHTET--TEETYDIYLLPPGEDPDACQSYLRMRN--RDGKYNLMFEEWVTDSPFIISPRITFEVS--VRLL 336 (631)
Q Consensus 263 ~~Ik~vL~~~~~~~--~~~f~DIYl~pP~~d~~~tde~LRvR~--~dg~~~LtykG~~~d~p~isrp~~ef~V~--v~il 336 (631)
+.++..+...+... ...+.|+||..|.. .|||+|. .|+.+.||||+|. +++..++++.++.|+ -.+.
T Consensus 12 ~~~~~~l~~~~~~~~~~~~q~d~Yfdt~~~------~~LRiR~~~~~~~~~lT~K~~~-~g~~~~~~E~e~~i~~~~~~~ 84 (165)
T 2dc4_A 12 EDIKRKIEGLGAKFFGIEEQEDVYFELPSP------KLLRVRKINNTGKSYITYKEIL-DKRNEEFYELEFEVQDPEGAI 84 (165)
T ss_dssp HHHHHHHHHHTCEEEEEEEEEEEEECCSTT------EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEBSCHHHHH
T ss_pred HHHHHHHHhcCCCcCcceeEEEEEEcCCCC------CEEEEEEEcCCCEEEEEEeCcC-CCCceeeeEEEEEcCCHHHHH
Confidence 55666665533222 23456999988865 7999994 5889999999999 887788888888885 3344
Q ss_pred HHHhhcCCeEEEEEEeeeeEeecCcEEEEeecccccCcceEEEEecc------HHHHHHHHHHcCCCCC-ccchhhHHHH
Q 006782 337 GGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD------RLYVKYVGEQLGLDGS-YVPRTYIEQI 409 (631)
Q Consensus 337 ~GL~~LGy~~~a~v~k~re~y~~~~~~i~lD~ve~Lg~~FveI~g~~------~~~v~~~~~~Lgl~g~-~i~kSYLEli 409 (631)
..|..|||.+...+.|.|..|..+++.|++|.++|+| .|+||+-.. ++.+.+++++|||..+ .+++||+||+
T Consensus 85 ~~L~~lg~~~~~~~~k~R~~~~~~~~~i~lD~~~~~g-~~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~ell 163 (165)
T 2dc4_A 85 ELFKRLGFKVQGVVKKRRWIYKLNNVTFELNRVEKAG-DFLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYIELI 163 (165)
T ss_dssp HHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHHHHC
T ss_pred HHHHHcCCcEEEEEEEEEEEEEECCEEEEEEecCCCc-cEEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHHHHh
Confidence 5567889999999999999999999999999999999 999998653 8899999999999986 8999999998
No 50
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.62 E-value=5.8e-17 Score=163.25 Aligned_cols=129 Identities=18% Similarity=0.114 Sum_probs=103.1
Q ss_pred eeEeecC--ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCC
Q 006782 42 TLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (631)
Q Consensus 42 ~ls~~~g--~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~ 118 (631)
++++.++ ...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++| .++|+||++.++
T Consensus 8 ~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------~i~~v~Q~~~~~ 78 (237)
T 2cbz_A 8 NATFTWARSDPPTLNGITFSIPEGA---LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------SVAYVPQQAWIQ 78 (237)
T ss_dssp EEEEESCTTSCCSEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------CEEEECSSCCCC
T ss_pred EEEEEeCCCCCceeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------EEEEEcCCCcCC
Confidence 3444444 4678999999999999 99999999999999999999999 8999999998 479999998754
Q ss_pred chhhHHHHHHHhhcc--ccc-------------c-cc-----ccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 119 DYDTLLENIRGLKEG--KAV-------------Q-VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 119 d~~tl~e~L~~L~~g--~~I-------------~-~P-----vyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
..++.+++...... ... . .| ..+......++|+++++..+++++.++.+++.|||+..
T Consensus 79 -~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 157 (237)
T 2cbz_A 79 -NDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 157 (237)
T ss_dssp -SEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred -CcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 67999999753210 000 0 01 01223456788999999999999999999999999999
Q ss_pred CcE
Q 006782 178 IDL 180 (631)
Q Consensus 178 lDl 180 (631)
+|.
T Consensus 158 LD~ 160 (237)
T 2cbz_A 158 VDA 160 (237)
T ss_dssp SCH
T ss_pred cCH
Confidence 997
No 51
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.62 E-value=2.2e-16 Score=161.72 Aligned_cols=178 Identities=14% Similarity=0.121 Sum_probs=130.0
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc----ccccc-cccCCCCCCchhhHH
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----SRIID-GNFDDPRLTDYDTLL 124 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~----~~~i~-~vfq~p~l~d~~tl~ 124 (631)
..+|+++||.++ |+ ++||+||||||||||+++|++++|+.|.|.++|.... .+.++ |+||++.+ ..++.
T Consensus 18 ~~il~~vsl~i~-Ge---~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GE---KVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SS---EEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHH
T ss_pred ceeEEeeeEEEC-CE---EEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHH
Confidence 679999999999 99 8999999999999999999998889999999996432 34688 99999887 67999
Q ss_pred HHHHHhhc--cc----------cccc--cccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhh
Q 006782 125 ENIRGLKE--GK----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (631)
Q Consensus 125 e~L~~L~~--g~----------~I~~--Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~ 190 (631)
+++..... .. .+.. ...+...++.++|+++++..+++++.++.+++.|||+..+|.. .
T Consensus 92 enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~-------~- 163 (263)
T 2pjz_A 92 DIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAA-------R- 163 (263)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHH-------H-
T ss_pred HHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHH-------H-
Confidence 99875321 11 0111 1223345677889999999999999999999999999999972 1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCC-ceeeeccCCcccHHHHHHHh
Q 006782 191 DLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQN-PTYILKSTRPVTVDEIKAVM 269 (631)
Q Consensus 191 rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n-~v~iLKs~~~v~~~~Ik~vL 269 (631)
...+.+. +..+ .+ +=+++.++.+.....++ .+++|+.++.+..+...+++
T Consensus 164 --~~~l~~~-----------L~~~---------------~~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 164 --RHVISRY-----------IKEY---------------GK-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp --HHHHHHH-----------HHHS---------------CS-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred --HHHHHHH-----------HHHh---------------cC-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 1111111 1111 01 34566666665567888 89999888766555555555
Q ss_pred c
Q 006782 270 S 270 (631)
Q Consensus 270 ~ 270 (631)
.
T Consensus 215 ~ 215 (263)
T 2pjz_A 215 E 215 (263)
T ss_dssp T
T ss_pred h
Confidence 3
No 52
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.60 E-value=2.9e-16 Score=176.98 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=106.9
Q ss_pred eeEeecCc--eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------ccccccc
Q 006782 42 TLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (631)
Q Consensus 42 ~ls~~~g~--~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------~~~i~~v 111 (631)
++++.++. ..+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.+||.+.. .+.++++
T Consensus 346 ~v~~~y~~~~~~~l~~i~l~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 422 (582)
T 3b5x_A 346 DVTFTYQGKEKPALSHVSFSIPQGK---TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALV 422 (582)
T ss_pred EEEEEcCCCCccccccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEE
Confidence 34444442 579999999999999 89999999999999999999999 89999999997532 2468999
Q ss_pred cCCCCCCchhhHHHHHHHhh-ccc---ccc--------------cc-cccc----ccccccCceeeeecCccEEEEeech
Q 006782 112 FDDPRLTDYDTLLENIRGLK-EGK---AVQ--------------VP-IYDF----KSSSRIGYRTLEVPSSRIVIIEGIY 168 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~-~g~---~I~--------------~P-vyd~----~~~~rs~~~~~~v~~a~VLIvEGi~ 168 (631)
+|+|.+|+. |+.+|+.... ... .+. .| -++. .....++|+++++..+++++-++.+
T Consensus 423 ~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~i 501 (582)
T 3b5x_A 423 SQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV 501 (582)
T ss_pred cCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 999999974 9999997643 110 000 01 1111 1245788999999999999999999
Q ss_pred hccccccCCCcE
Q 006782 169 ALSEKLRPLIDL 180 (631)
Q Consensus 169 lL~dEl~~~lDl 180 (631)
++.||+++.+|.
T Consensus 502 lllDEpts~LD~ 513 (582)
T 3b5x_A 502 LILDEATSALDT 513 (582)
T ss_pred EEEECccccCCH
Confidence 999999999997
No 53
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.60 E-value=5.3e-16 Score=174.89 Aligned_cols=190 Identities=13% Similarity=0.166 Sum_probs=134.6
Q ss_pred ceeEeecCc--eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------ccccc
Q 006782 41 DTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (631)
Q Consensus 41 ~~ls~~~g~--~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~ 110 (631)
+++++.++. ..+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.+||.+... +.+++
T Consensus 345 ~~v~~~y~~~~~~~l~~v~~~i~~G~---~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 421 (582)
T 3b60_A 345 RNVTFTYPGREVPALRNINLKIPAGK---TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 421 (582)
T ss_dssp EEEEECSSSSSCCSEEEEEEEECTTC---EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred EEEEEEcCCCCCccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeE
Confidence 344455542 578999999999999 89999999999999999999999 899999999975432 35899
Q ss_pred ccCCCCCCchhhHHHHHHHhh-ccc---cc-------c-------cc-cccc----ccccccCceeeeecCccEEEEeec
Q 006782 111 NFDDPRLTDYDTLLENIRGLK-EGK---AV-------Q-------VP-IYDF----KSSSRIGYRTLEVPSSRIVIIEGI 167 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~-~g~---~I-------~-------~P-vyd~----~~~~rs~~~~~~v~~a~VLIvEGi 167 (631)
++|+|.+|+. |+.+|+.... ... .+ . .| -++. .....++|+++++..+++++-++.
T Consensus 422 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ 500 (582)
T 3b60_A 422 VSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP 500 (582)
T ss_dssp ECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred EccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 9999999985 9999998643 111 00 0 01 1111 124578899999999999999999
Q ss_pred hhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCC
Q 006782 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGF 247 (631)
Q Consensus 168 ~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~ 247 (631)
+++.|||++.+|.. ....+.+..++..+ | .+=++|.++.+... .
T Consensus 501 illlDEpts~LD~~-------~~~~i~~~l~~~~~-~---------------------------~tvi~itH~~~~~~-~ 544 (582)
T 3b60_A 501 ILILDEATSALDTE-------SERAIQAALDELQK-N---------------------------RTSLVIAHRLSTIE-Q 544 (582)
T ss_dssp EEEEETTTSSCCHH-------HHHHHHHHHHHHHT-T---------------------------SEEEEECSCGGGTT-T
T ss_pred EEEEECccccCCHH-------HHHHHHHHHHHHhC-C---------------------------CEEEEEeccHHHHH-h
Confidence 99999999999973 22222222222211 2 22455555555433 5
Q ss_pred CCceeeeccCCcccHHHHHHHhc
Q 006782 248 QNPTYILKSTRPVTVDEIKAVMS 270 (631)
Q Consensus 248 ~n~v~iLKs~~~v~~~~Ik~vL~ 270 (631)
++.+++|+.++.+..+...+++.
T Consensus 545 ~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 545 ADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp CSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEEECCEEEEecCHHHHHH
Confidence 77888888887665555555554
No 54
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.59 E-value=4.9e-16 Score=175.13 Aligned_cols=190 Identities=17% Similarity=0.231 Sum_probs=136.5
Q ss_pred eeEeec--CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccc
Q 006782 42 TLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (631)
Q Consensus 42 ~ls~~~--g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~v 111 (631)
++++.+ +...+|+++||.+++|+ ++||+||||||||||+++|.+++ |+.|.|.+||.+... +.++++
T Consensus 344 ~v~~~y~~~~~~~l~~isl~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v 420 (578)
T 4a82_A 344 HVSFQYNDNEAPILKDINLSIEKGE---TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 420 (578)
T ss_dssp EEEECSCSSSCCSEEEEEEEECTTC---EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEE
T ss_pred EEEEEcCCCCCcceeeeEEEECCCC---EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEE
Confidence 344444 34578999999999999 89999999999999999999999 899999999975432 468999
Q ss_pred cCCCCCCchhhHHHHHHHhhcccc---c--------------ccc-ccccc----cccccCceeeeecCccEEEEeechh
Q 006782 112 FDDPRLTDYDTLLENIRGLKEGKA---V--------------QVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g~~---I--------------~~P-vyd~~----~~~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
+|+|.+|+. |+.+|+........ + ..| -++.. ....++|+++++..+++++-++.++
T Consensus 421 ~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~il 499 (578)
T 4a82_A 421 QQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL 499 (578)
T ss_dssp CSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEE
T ss_pred eCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999976 99999965321100 0 012 12222 1357889999999999999999999
Q ss_pred ccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCC
Q 006782 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQN 249 (631)
Q Consensus 170 L~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n 249 (631)
+.||+++.+|.. ..+.+....++.. +..+=++|.++.+... .++
T Consensus 500 llDEpts~LD~~-------~~~~i~~~l~~~~----------------------------~~~t~i~itH~l~~~~-~~d 543 (578)
T 4a82_A 500 ILDEATSALDLE-------SESIIQEALDVLS----------------------------KDRTTLIVAHRLSTIT-HAD 543 (578)
T ss_dssp EEESTTTTCCHH-------HHHHHHHHHHHHT----------------------------TTSEEEEECSSGGGTT-TCS
T ss_pred EEECccccCCHH-------HHHHHHHHHHHHc----------------------------CCCEEEEEecCHHHHH-cCC
Confidence 999999999972 1112222222111 1123456666665543 478
Q ss_pred ceeeeccCCcccHHHHHHHhcc
Q 006782 250 PTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 250 ~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
.+++|+.|+.+..+...+++..
T Consensus 544 ~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 544 KIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp EEEEEETTEEEEEECHHHHHHT
T ss_pred EEEEEECCEEEEECCHHHHHhC
Confidence 8889998887776766666654
No 55
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.58 E-value=3.1e-16 Score=157.07 Aligned_cols=129 Identities=19% Similarity=0.121 Sum_probs=103.5
Q ss_pred eeEeec--CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCC
Q 006782 42 TLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (631)
Q Consensus 42 ~ls~~~--g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~ 118 (631)
++++.+ +...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++| .++|++|++.++
T Consensus 11 ~l~~~y~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------~i~~v~q~~~~~ 81 (229)
T 2pze_A 11 NVTAFWEEGGTPVLKDINFKIERGQ---LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------RISFCSQFSWIM 81 (229)
T ss_dssp EEEECSSTTSCCSEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS------CEEEECSSCCCC
T ss_pred EEEEEeCCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC------EEEEEecCCccc
Confidence 344444 34678999999999999 99999999999999999999999 8999999998 479999999988
Q ss_pred chhhHHHHHHHhhccc-----------ccc-----ccc-----cccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 119 DYDTLLENIRGLKEGK-----------AVQ-----VPI-----YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 119 d~~tl~e~L~~L~~g~-----------~I~-----~Pv-----yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
+. ++.+++....... .+. .|. .+......++|+++++..+++++.++.+++.|||+..
T Consensus 82 ~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~ 160 (229)
T 2pze_A 82 PG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 160 (229)
T ss_dssp SB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTT
T ss_pred CC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccC
Confidence 85 9999987532100 000 010 0111256788999999999999999999999999999
Q ss_pred CcE
Q 006782 178 IDL 180 (631)
Q Consensus 178 lDl 180 (631)
+|.
T Consensus 161 LD~ 163 (229)
T 2pze_A 161 LDV 163 (229)
T ss_dssp SCH
T ss_pred CCH
Confidence 997
No 56
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.57 E-value=4.3e-16 Score=176.02 Aligned_cols=190 Identities=15% Similarity=0.198 Sum_probs=135.5
Q ss_pred eeEeec--CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccc
Q 006782 42 TLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (631)
Q Consensus 42 ~ls~~~--g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~v 111 (631)
++++.+ +...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.+||.+... +.++++
T Consensus 346 ~v~~~y~~~~~~~l~~isl~i~~Ge---~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 422 (587)
T 3qf4_A 346 NVEFRYFENTDPVLSGVNFSVKPGS---LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAV 422 (587)
T ss_dssp EEEECSSSSSCCSEEEEEEEECTTC---EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEE
T ss_pred EEEEEcCCCCCcceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEE
Confidence 334444 45679999999999999 89999999999999999999999 899999999986432 458999
Q ss_pred cCCCCCCchhhHHHHHHHhhccc---cc--------------ccc-ccc----cccccccCceeeeecCccEEEEeechh
Q 006782 112 FDDPRLTDYDTLLENIRGLKEGK---AV--------------QVP-IYD----FKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g~---~I--------------~~P-vyd----~~~~~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
+|+|.+|+. |+.+|+....... .+ ..| -++ ......++|+++++..+++++-++.++
T Consensus 423 ~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~il 501 (587)
T 3qf4_A 423 PQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVL 501 (587)
T ss_dssp CSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEE
T ss_pred CCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEE
Confidence 999999975 9999996432110 00 011 122 122457889999999999999999999
Q ss_pred ccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCC
Q 006782 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQN 249 (631)
Q Consensus 170 L~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n 249 (631)
+.||+++.+|.. ..+.+....++.. +| .+=++|.++.+.. ..++
T Consensus 502 llDEpts~LD~~-------~~~~i~~~l~~~~-~~---------------------------~tvi~itH~l~~~-~~~d 545 (587)
T 3qf4_A 502 ILDDCTSSVDPI-------TEKRILDGLKRYT-KG---------------------------CTTFIITQKIPTA-LLAD 545 (587)
T ss_dssp EEESCCTTSCHH-------HHHHHHHHHHHHS-TT---------------------------CEEEEEESCHHHH-TTSS
T ss_pred EEECCcccCCHH-------HHHHHHHHHHHhC-CC---------------------------CEEEEEecChHHH-HhCC
Confidence 999999999973 1111222222211 12 2345555555443 3577
Q ss_pred ceeeeccCCcccHHHHHHHhcc
Q 006782 250 PTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 250 ~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
++++|+.++.+..+...+++..
T Consensus 546 ~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 546 KILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp EEEEEETTEEEEEECHHHHHHH
T ss_pred EEEEEECCEEEEECCHHHHHhC
Confidence 7888888887776666666643
No 57
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=99.56 E-value=1e-14 Score=142.33 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=116.0
Q ss_pred HHHHHHHhccccc-c--cccceeeeecCCCCCCchhccceeeeeecC--CEEEEEEeeeecCCCeeecceeEeeee-h-h
Q 006782 262 VDEIKAVMSKEHT-E--TTEETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVS-V-R 334 (631)
Q Consensus 262 ~~~Ik~vL~~~~~-~--~~~~f~DIYl~pP~~d~~~tde~LRvR~~d--g~~~LtykG~~~d~p~isrp~~ef~V~-v-~ 334 (631)
.+.+...|..... . ....+.|+||..|+.++...+.|||+|..+ +...+|+|||..++-. +++|. . .
T Consensus 22 ~~~~~~~L~~~~~~~~~~~~~q~d~YfDtp~~~L~~~~~aLRiR~~~~~~~~~~t~Kgp~~~~~~------e~~v~d~~~ 95 (189)
T 2aca_A 22 HDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPEADRCE------ATNITKLDS 95 (189)
T ss_dssp HHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHHHTTCEEEEEEEETTTEEEEEEECSSTTBEE------EEEBSCHHH
T ss_pred HHHHHHHHHhcCCcccCcceEEEEEEEeCCCcchhhCCeEEEEEEecCCCcEEEEEcCCCcCceE------EEecCCHHH
Confidence 4677777876554 2 233456999999999999999999999753 4789999999887532 45553 2 4
Q ss_pred hHHHHhhcCCeEEEEEEeeeeEeecCcEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCCCC-ccchh
Q 006782 335 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDGS-YVPRT 404 (631)
Q Consensus 335 il~GL~~LGy~~~a~v~k~re~y~~~~~~i~lD~ve~Lg~~FveI~g~---------~~~~v~~~~~~Lgl~g~-~i~kS 404 (631)
+...|.++||.+++.+.|.|+.|..+++.|+||.+++|| .|+||+-. ..+.+.+++++|||..+ .+++|
T Consensus 96 ~~~~L~~lgl~~~~~~~k~R~~~~~~~~~v~lD~~~~lg-~f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~s 174 (189)
T 2aca_A 96 AQSMLENMGYEVIQCSKKIRSIFFVGEFHITLDFLDGFG-HFAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRS 174 (189)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSC
T ss_pred HHHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEcccCCe-eEEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhh
Confidence 555567799999999999999999999999999999999 99999632 36899999999999864 69999
Q ss_pred hHHHHHHh
Q 006782 405 YIEQIQLE 412 (631)
Q Consensus 405 YLEli~le 412 (631)
|+||+ ++
T Consensus 175 Y~~ll-~~ 181 (189)
T 2aca_A 175 YKEIL-SA 181 (189)
T ss_dssp TTTSS-CC
T ss_pred HHHHH-Hh
Confidence 99998 44
No 58
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.55 E-value=7.3e-16 Score=174.42 Aligned_cols=191 Identities=16% Similarity=0.221 Sum_probs=135.0
Q ss_pred ceeEeecC-ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccc
Q 006782 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (631)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~v 111 (631)
+++++.++ ...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.+||.+... +.++++
T Consensus 358 ~~v~~~y~~~~~~l~~isl~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v 434 (598)
T 3qf4_B 358 KNVWFSYDKKKPVLKDITFHIKPGQ---KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIV 434 (598)
T ss_dssp EEEECCSSSSSCSCCSEEEECCTTC---EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEECCCCCccccceEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEE
Confidence 33444443 3568999999999999 89999999999999999999999 899999999975432 468999
Q ss_pred cCCCCCCchhhHHHHHHHhhccc---cc--------------ccc-cccccc----ccccCceeeeecCccEEEEeechh
Q 006782 112 FDDPRLTDYDTLLENIRGLKEGK---AV--------------QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~g~---~I--------------~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
+|+|.+|+ .|+.+|+....... .+ ..| .++... ...++|+++++..+++++-++.++
T Consensus 435 ~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~il 513 (598)
T 3qf4_B 435 LQDTILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKIL 513 (598)
T ss_dssp CTTCCCCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEE
T ss_pred eCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987 49999997532210 00 011 111111 357889999999999999999999
Q ss_pred ccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCC
Q 006782 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQN 249 (631)
Q Consensus 170 L~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n 249 (631)
+.||+++.+|.. ....+.+..++.. .| .+=++|.++.+... .++
T Consensus 514 llDEpts~LD~~-------~~~~i~~~l~~~~-~~---------------------------~t~i~itH~l~~~~-~~d 557 (598)
T 3qf4_B 514 ILDEATSNVDTK-------TEKSIQAAMWKLM-EG---------------------------KTSIIIAHRLNTIK-NAD 557 (598)
T ss_dssp EECCCCTTCCHH-------HHHHHHHHHHHHH-TT---------------------------SEEEEESCCTTHHH-HCS
T ss_pred EEECCccCCCHH-------HHHHHHHHHHHHc-CC---------------------------CEEEEEecCHHHHH-cCC
Confidence 999999999973 2222222222221 12 22455555554432 377
Q ss_pred ceeeeccCCcccHHHHHHHhcc
Q 006782 250 PTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 250 ~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
.+++|+.|+.+..+...+++..
T Consensus 558 ~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 558 LIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp EEEEECSSSEEECSCHHHHHHT
T ss_pred EEEEEECCEEEEECCHHHHHhC
Confidence 7888888887776666666643
No 59
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.53 E-value=1.1e-15 Score=172.78 Aligned_cols=135 Identities=18% Similarity=0.248 Sum_probs=107.4
Q ss_pred eeEeecCc---eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------ccccc
Q 006782 42 TLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (631)
Q Consensus 42 ~ls~~~g~---~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~ 110 (631)
++++.++. ..+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.+||.+... +.+++
T Consensus 346 ~v~~~y~~~~~~~vl~~isl~i~~G~---~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 422 (595)
T 2yl4_A 346 NVHFAYPARPEVPIFQDFSLSIPSGS---VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGT 422 (595)
T ss_dssp EEEEECSSCTTSEEEEEEEEEECTTC---EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEE
T ss_pred EEEEEeCCCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEE
Confidence 34444432 469999999999999 89999999999999999999999 899999999975432 45899
Q ss_pred ccCCCCCCchhhHHHHHHHhhcc---cc---cc--------------cc-cccccc----ccccCceeeeecCccEEEEe
Q 006782 111 NFDDPRLTDYDTLLENIRGLKEG---KA---VQ--------------VP-IYDFKS----SSRIGYRTLEVPSSRIVIIE 165 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~g---~~---I~--------------~P-vyd~~~----~~rs~~~~~~v~~a~VLIvE 165 (631)
++|+|.+|+ .|+.+|+...... .. +. .| .++... ...++|+++++..+++++-+
T Consensus 423 v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~ 501 (595)
T 2yl4_A 423 VSQEPILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKN 501 (595)
T ss_dssp ECSSCCCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHC
T ss_pred EccCCcccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcC
Confidence 999999997 4999999763221 00 00 11 122222 46788999999999999999
Q ss_pred echhccccccCCCcE
Q 006782 166 GIYALSEKLRPLIDL 180 (631)
Q Consensus 166 Gi~lL~dEl~~~lDl 180 (631)
+.+++.||+++.+|.
T Consensus 502 p~illlDEpts~LD~ 516 (595)
T 2yl4_A 502 PKILLLDEATSALDA 516 (595)
T ss_dssp CSEEEEECCCSSCCH
T ss_pred CCEEEEECcccCCCH
Confidence 999999999999997
No 60
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.45 E-value=2.6e-14 Score=174.36 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=104.2
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~~ 121 (631)
.++|++|||.+++|+ ++||+||||||||||+++|.+++ |+.|.|.+||.+... +.+++++|+|.+|+.
T Consensus 403 ~~vL~~isl~i~~G~---~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~- 478 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQ---TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT- 478 (1284)
T ss_dssp CCSEEEEEEEECTTC---EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-
T ss_pred CcceecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-
Confidence 468999999999999 89999999999999999999999 899999999975432 358999999999975
Q ss_pred hHHHHHHHhhccc---c-------------c-ccc-cccccc----ccccCceeeeecCccEEEEeechhccccccCCCc
Q 006782 122 TLLENIRGLKEGK---A-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (631)
Q Consensus 122 tl~e~L~~L~~g~---~-------------I-~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD 179 (631)
|+.+|+....... . + ..| .++... ...++|+++++..+++++-++.+++.||+++.+|
T Consensus 479 ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD 558 (1284)
T 3g5u_A 479 TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558 (1284)
T ss_dssp CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSC
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 9999997543210 0 0 112 122222 3577899999999999999999999999999999
Q ss_pred E
Q 006782 180 L 180 (631)
Q Consensus 180 l 180 (631)
.
T Consensus 559 ~ 559 (1284)
T 3g5u_A 559 T 559 (1284)
T ss_dssp H
T ss_pred H
Confidence 7
No 61
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.45 E-value=1.4e-14 Score=177.13 Aligned_cols=190 Identities=16% Similarity=0.192 Sum_probs=137.6
Q ss_pred eeEeec---CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------ccccc
Q 006782 42 TLSFEK---GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (631)
Q Consensus 42 ~ls~~~---g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~ 110 (631)
+++|.| +..+||++|||.+++|+ .|||+|+||||||||+++|.+++ |..|.|.+||.+... +.+++
T Consensus 1081 nVsf~Y~~~~~~~VL~~isl~I~~Ge---~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~ 1157 (1321)
T 4f4c_A 1081 NVRFAYPERPEIEILKGLSFSVEPGQ---TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAI 1157 (1321)
T ss_dssp EEEECCTTSCSSCSEEEEEEEECTTC---EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEE
T ss_pred EEEEeCCCCCCCccccceeEEECCCC---EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 344444 23469999999999999 79999999999999999999999 999999999986543 56899
Q ss_pred ccCCCCCCchhhHHHHHHHhhccc------------------cc-ccc-ccccccc----cccCceeeeecCccEEEEee
Q 006782 111 NFDDPRLTDYDTLLENIRGLKEGK------------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEG 166 (631)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~g~------------------~I-~~P-vyd~~~~----~rs~~~~~~v~~a~VLIvEG 166 (631)
++|+|.+|+. |+++||..-.... .+ ..| -||...+ ..++|+++++..+|+++-++
T Consensus 1158 V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~ 1236 (1321)
T 4f4c_A 1158 VSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNP 1236 (1321)
T ss_dssp ECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCC
T ss_pred ECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCC
Confidence 9999999974 9999985321100 01 112 2444333 46788999999999999999
Q ss_pred chhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCC
Q 006782 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTG 246 (631)
Q Consensus 167 i~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~ 246 (631)
.+++.||+++.+|.. .. +.+++.+.+ -.+...=++|-+..+.. .
T Consensus 1237 ~ILiLDEaTSaLD~~-------tE---~~Iq~~l~~-------------------------~~~~~TvI~IAHRLsTi-~ 1280 (1321)
T 4f4c_A 1237 KILLLDEATSALDTE-------SE---KVVQEALDR-------------------------AREGRTCIVIAHRLNTV-M 1280 (1321)
T ss_dssp SEEEEESCCCSTTSH-------HH---HHHHHHHTT-------------------------TSSSSEEEEECSSSSTT-T
T ss_pred CEEEEeCccccCCHH-------HH---HHHHHHHHH-------------------------HcCCCEEEEeccCHHHH-H
Confidence 999999999999972 11 122222211 01223345555554432 3
Q ss_pred CCCceeeeccCCcccHHHHHHHhcc
Q 006782 247 FQNPTYILKSTRPVTVDEIKAVMSK 271 (631)
Q Consensus 247 ~~n~v~iLKs~~~v~~~~Ik~vL~~ 271 (631)
.+++++||+.|+.++.|.-.+.+.+
T Consensus 1281 ~aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1281 NADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp TCSEEEEESSSSEEEEECHHHHHHC
T ss_pred hCCEEEEEECCEEEEECCHHHHHhC
Confidence 4678889999999998888888865
No 62
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.43 E-value=5.7e-14 Score=171.42 Aligned_cols=182 Identities=15% Similarity=0.236 Sum_probs=134.4
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCchh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYD 121 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~~ 121 (631)
..+|+++||.+++|+ ++||+||||||||||+++|.+++ |+.|.|.+||.+... +.+++++|+|.+|+ .
T Consensus 1046 ~~~l~~vsl~i~~Ge---~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ 1121 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQ---TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-C 1121 (1284)
T ss_dssp CCSBSSCCEEECSSS---EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-S
T ss_pred CeeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-c
Confidence 368999999999999 89999999999999999999999 899999999975432 46899999998886 5
Q ss_pred hHHHHHHHhhccc------------------cc-ccc-cccccc----ccccCceeeeecCccEEEEeechhccccccCC
Q 006782 122 TLLENIRGLKEGK------------------AV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 122 tl~e~L~~L~~g~------------------~I-~~P-vyd~~~----~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
++.+|+....... .+ ..| .|+... ...++|+++++..+++++-++.+++.||+++.
T Consensus 1122 ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~ 1201 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201 (1284)
T ss_dssp BHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSS
T ss_pred cHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999985422100 00 012 233222 35788999999999999999999999999999
Q ss_pred CcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccC
Q 006782 178 IDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKST 257 (631)
Q Consensus 178 lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~ 257 (631)
+|.. ..+.+.+..+.. . ...+=++|.++.+.. ..|+++++|+.|
T Consensus 1202 lD~~-------~~~~i~~~l~~~-~---------------------------~~~tvi~isH~l~~i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1202 LDTE-------SEKVVQEALDKA-R---------------------------EGRTCIVIAHRLSTI-QNADLIVVIQNG 1245 (1284)
T ss_dssp CCHH-------HHHHHHHHHHHH-S---------------------------SSSCEEEECSCTTGG-GSCSEEEEEETB
T ss_pred CCHH-------HHHHHHHHHHHh-C---------------------------CCCEEEEEecCHHHH-HcCCEEEEEECC
Confidence 9972 111222222211 0 123456777776654 448899999999
Q ss_pred CcccHHHHHHHhcc
Q 006782 258 RPVTVDEIKAVMSK 271 (631)
Q Consensus 258 ~~v~~~~Ik~vL~~ 271 (631)
+.+..+...+++..
T Consensus 1246 ~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp EEEEEECHHHHHHS
T ss_pred EEEEECCHHHHHhC
Confidence 88877777777654
No 63
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.43 E-value=2.1e-14 Score=149.07 Aligned_cols=120 Identities=20% Similarity=0.172 Sum_probs=97.9
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHHHHHH
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~ 128 (631)
..+|+++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++| .++|+||++.+|+. ++.+++.
T Consensus 51 ~~vl~~isl~i~~Ge---~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------~i~~v~Q~~~l~~~-tv~enl~ 120 (290)
T 2bbs_A 51 TPVLKDINFKIERGQ---LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------RISFCSQNSWIMPG-TIKENII 120 (290)
T ss_dssp CCSEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS------CEEEECSSCCCCSS-BHHHHHH
T ss_pred ceEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------EEEEEeCCCccCcc-cHHHHhh
Confidence 468999999999999 99999999999999999999999 7999999987 47999999998885 9999986
Q ss_pred Hhhccc--c-------cc-------ccc-----cccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 129 GLKEGK--A-------VQ-------VPI-----YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 129 ~L~~g~--~-------I~-------~Pv-----yd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
..... . .. .|. .+......++|+++++..+++++.++.+++.|||+..+|.
T Consensus 121 -~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~ 192 (290)
T 2bbs_A 121 -GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192 (290)
T ss_dssp -TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred -CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCH
Confidence 21100 0 00 010 0011246788999999999999999999999999999997
No 64
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.41 E-value=1.1e-13 Score=169.43 Aligned_cols=183 Identities=20% Similarity=0.255 Sum_probs=131.9
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------cccccccCCCCCCch
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDY 120 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------~~i~~vfq~p~l~d~ 120 (631)
..++|+++||.+++|+ .+||+||+|||||||+++|.+++ |..|.|.+||.+... ..+++++|+|.+|+
T Consensus 430 ~~~vL~~isl~i~~G~---~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~- 505 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQ---TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN- 505 (1321)
T ss_dssp TSCSEEEEEEEECTTC---EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS-
T ss_pred CCceeeceEEeecCCc---EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeC-
Confidence 4578999999999999 89999999999999999999999 999999999976432 46899999999997
Q ss_pred hhHHHHHHHhhccc----------------cc-ccc-ccccccc----cccCceeeeecCccEEEEeechhccccccCCC
Q 006782 121 DTLLENIRGLKEGK----------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (631)
Q Consensus 121 ~tl~e~L~~L~~g~----------------~I-~~P-vyd~~~~----~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l 178 (631)
.|+++||....... .+ ..| -|+-..+ ..+||+++++..+|+++-++.++++||+++.+
T Consensus 506 ~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaL 585 (1321)
T 4f4c_A 506 CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 585 (1321)
T ss_dssp EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred CchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccC
Confidence 59999997543210 01 112 2333332 46789999999999999999999999999999
Q ss_pred cEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCCCCCCCCceeeeccCC
Q 006782 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTR 258 (631)
Q Consensus 179 DlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~~~~n~v~iLKs~~ 258 (631)
|.. . .+.+.+..+.+. +|+| -++|-+.... -..++.+++|+.|+
T Consensus 586 D~~------t-e~~i~~~l~~~~-~~~T---------------------------~iiiaHrls~-i~~aD~Iivl~~G~ 629 (1321)
T 4f4c_A 586 DAE------S-EGIVQQALDKAA-KGRT---------------------------TIIIAHRLST-IRNADLIISCKNGQ 629 (1321)
T ss_dssp CTT------T-HHHHHHHHHHHH-TTSE---------------------------EEEECSCTTT-TTTCSEEEEEETTE
T ss_pred CHH------H-HHHHHHHHHHHh-CCCE---------------------------EEEEcccHHH-HHhCCEEEEeeCCe
Confidence 973 1 122222222211 2333 4445444433 23456667788888
Q ss_pred cccHHHHHHHhcc
Q 006782 259 PVTVDEIKAVMSK 271 (631)
Q Consensus 259 ~v~~~~Ik~vL~~ 271 (631)
.+..|...+++..
T Consensus 630 ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 630 VVEVGDHRALMAQ 642 (1321)
T ss_dssp EEEEECHHHHHTT
T ss_pred eeccCCHHHHHHh
Confidence 7777666666543
No 65
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.34 E-value=1.4e-12 Score=126.59 Aligned_cols=162 Identities=16% Similarity=0.250 Sum_probs=100.6
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccccccccc------ccCCCCCCchhhHHHHHHHhhcccccc
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDG------NFDDPRLTDYDTLLENIRGLKEGKAVQ 137 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~------vfq~p~l~d~~tl~e~L~~L~~g~~I~ 137 (631)
.++.+|||+|++||||||+++.|++.++....|..|++......+.. .++.+..++...+.+.+..+..+ ..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~--~~ 96 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMES--AR 96 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHH--HT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhC--CC
Confidence 44459999999999999999999998766788888887543322211 11122233444455555443322 11
Q ss_pred ccccccccccccCceeeeecCccEEEEeechhcc-ccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 006782 138 VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISE 216 (631)
Q Consensus 138 ~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~-dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~ 216 (631)
.|..... .......+++|+||.+++. ..+.+.+|..||++++.++++.|+.. |+++.+.+..+|..
T Consensus 97 ~~~~~~~--------~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~-----R~~~~e~~~~~~~~ 163 (207)
T 2qt1_A 97 HSVVSTD--------QESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRST-----RVYQPPDSPGYFDG 163 (207)
T ss_dssp TSSCCC-------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHH-----SCCSSCCCTTHHHH
T ss_pred CCCcCCC--------eeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHH-----cCCCccchHHHHHH
Confidence 2211111 1113456799999988876 36778899999999999887665433 35555544555656
Q ss_pred ccccchhhcccCCCCCCeEE--EeCC
Q 006782 217 TVYPMYKAFIEPDLQTAHIK--IINK 240 (631)
Q Consensus 217 ~v~P~~~~fIeP~k~~ADiI--I~N~ 240 (631)
.+++.|..+++...+.||.+ |.|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~Id~~ 189 (207)
T 2qt1_A 164 HVWPMYLKYRQEMQDITWEVVYLDGT 189 (207)
T ss_dssp THHHHHHHHHHHGGGCSSCCEEEETT
T ss_pred HHhHHHHHHHHHHHhcCCeEEEecCC
Confidence 77777776665555566655 6554
No 66
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.33 E-value=4.6e-13 Score=149.95 Aligned_cols=129 Identities=17% Similarity=0.221 Sum_probs=100.5
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCch
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDY 120 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~ 120 (631)
++++.++.. .++.++|.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+ ...++|++|++..+..
T Consensus 292 ~l~~~~~~~-~l~~~~~~i~~Ge---~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------~~~i~~v~Q~~~~~~~ 361 (538)
T 1yqt_A 292 RLVKDYGSF-RLEVEPGEIKKGE---VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------DLTVAYKPQYIKADYE 361 (538)
T ss_dssp CEEEEETTE-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------CCCEEEECSSCCCCCS
T ss_pred eEEEEECCE-EEEeCccccCCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------CceEEEEecCCcCCCC
Confidence 334444443 6899999999999 99999999999999999999999 88898875 2368999999877666
Q ss_pred hhHHHHHHHh-hcc----c-------cccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 121 DTLLENIRGL-KEG----K-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 121 ~tl~e~L~~L-~~g----~-------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.++.+++... ... . .+.. +..+...+..++|+.+++..+++++.++.+++.|||+..+|+
T Consensus 362 ~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~ 434 (538)
T 1yqt_A 362 GTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 434 (538)
T ss_dssp SBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 7787776543 110 0 0111 223444567888999999999999999999999999999998
No 67
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.31 E-value=4.5e-13 Score=152.10 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=109.5
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCch
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDY 120 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~ 120 (631)
++++.++.. .|+.++|.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+ ...++|++|++..+..
T Consensus 362 ~l~~~~~~~-~l~~~~~~v~~Ge---i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------~~~i~~v~Q~~~~~~~ 431 (607)
T 3bk7_A 362 RLVKDYGSF-KLEVEPGEIRKGE---VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------DLTVAYKPQYIKAEYE 431 (607)
T ss_dssp CEEEECSSC-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------CCCEEEECSSCCCCCS
T ss_pred ceEEEecce-EEEecccccCCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------eeEEEEEecCccCCCC
Confidence 344444443 6899999999999 99999999999999999999999 88898876 2368999999877666
Q ss_pred hhHHHHHHHh-hcc----c-------cccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcC
Q 006782 121 DTLLENIRGL-KEG----K-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGG 187 (631)
Q Consensus 121 ~tl~e~L~~L-~~g----~-------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad 187 (631)
.++.+++... ... . .+.. +..+...+..++|+.+++..+++++.++.+++.|||+..+|+.
T Consensus 432 ~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~------ 505 (607)
T 3bk7_A 432 GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE------ 505 (607)
T ss_dssp SBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH------
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHH------
Confidence 7887777543 110 0 0111 2234455678899999999999999999999999999999983
Q ss_pred hhhHHHHHHHHHHH-HhCCC
Q 006782 188 VHFDLVKRVFRDIQ-RVGQE 206 (631)
Q Consensus 188 ~d~rLiRRI~RDv~-erG~s 206 (631)
....+..+.+++. +.|.+
T Consensus 506 -~~~~l~~~l~~l~~~~g~t 524 (607)
T 3bk7_A 506 -QRLAVSRAIRHLMEKNEKT 524 (607)
T ss_dssp -HHHHHHHHHHHHHHHTTCE
T ss_pred -HHHHHHHHHHHHHHhCCCE
Confidence 3333444445443 33544
No 68
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.30 E-value=9.2e-13 Score=147.56 Aligned_cols=130 Identities=12% Similarity=0.149 Sum_probs=101.4
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCch
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDY 120 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~ 120 (631)
.+++.++. ..+..++|.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+++. .+++++|++.....
T Consensus 274 ~l~~~~~~-~~l~~~~~~i~~Ge---i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----~i~~~~q~~~~~~~ 344 (538)
T 3ozx_A 274 KIIKKLGD-FQLVVDNGEAKEGE---IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ-----ILSYKPQRIFPNYD 344 (538)
T ss_dssp CEEEEETT-EEEEECCEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC-----CEEEECSSCCCCCS
T ss_pred ceEEEECC-EEEEeccceECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe-----eeEeechhcccccC
Confidence 33344444 35788899999999 99999999999999999999999 89999987653 46788887766556
Q ss_pred hhHHHHHHHhhccc-------------cccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 121 DTLLENIRGLKEGK-------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 121 ~tl~e~L~~L~~g~-------------~I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
.++.+++....... .+.. ...+...++.++|+.+++..+++++.++.+++.|||+..+|+
T Consensus 345 ~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~ 418 (538)
T 3ozx_A 345 GTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDV 418 (538)
T ss_dssp SBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred CCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 78888887542211 0001 223445567889999999999999999999999999999998
No 69
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.24 E-value=9.5e-13 Score=150.65 Aligned_cols=154 Identities=11% Similarity=0.082 Sum_probs=91.9
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHH---------------------HHHHHhC-CC-------ceEEEECC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT---------------------EKVLNFM-PS-------IAVITMDN 100 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLl---------------------r~L~~ll-p~-------~G~I~lDg 100 (631)
..+|++|||.+++|+ ++||+||||||||||+ +.+.++. |+ .+.|.+++
T Consensus 31 ~~~L~~vsl~i~~Ge---~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGK---LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp STTCCSEEEEEETTS---EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS
T ss_pred ccceeccEEEECCCC---EEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecC
Confidence 347999999999999 9999999999999998 7777766 66 34555555
Q ss_pred cccc---ccccccccCCCCCC-------------------chhhHHHHHHHhhcc------c------------------
Q 006782 101 YNDS---SRIIDGNFDDPRLT-------------------DYDTLLENIRGLKEG------K------------------ 134 (631)
Q Consensus 101 ~~~~---~~~i~~vfq~p~l~-------------------d~~tl~e~L~~L~~g------~------------------ 134 (631)
.... ...+++++|.+..+ ...++.+++...... .
T Consensus 108 ~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 108 KTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp CC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred chhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 4321 23455666544332 334566665432100 0
Q ss_pred ccccc--ccccccccccCceeeeecCccEEEEeec--hhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHH
Q 006782 135 AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGI--YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (631)
Q Consensus 135 ~I~~P--vyd~~~~~rs~~~~~~v~~a~VLIvEGi--~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~V 210 (631)
.+... ..+...++.++|+.+++..+++++.++. +++.|||+..+|. .....+..+.+++++.|.++--|
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~-------~~~~~l~~~l~~l~~~g~tvi~v 260 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ-------RDNDRLIATLKSMRDLGNTLIVV 260 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG-------GGHHHHHHHHHHHHHTTCEEEEE
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH-------HHHHHHHHHHHHHHHcCCEEEEE
Confidence 00011 1244556788999999999999999987 9999999999998 34555666666666667664443
Q ss_pred HHH
Q 006782 211 IHQ 213 (631)
Q Consensus 211 i~q 213 (631)
.|.
T Consensus 261 tHd 263 (670)
T 3ux8_A 261 EHD 263 (670)
T ss_dssp CCC
T ss_pred eCC
Confidence 343
No 70
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.23 E-value=9.9e-13 Score=132.85 Aligned_cols=81 Identities=12% Similarity=0.115 Sum_probs=49.9
Q ss_pred ccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCe-EE
Q 006782 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IK 236 (631)
Q Consensus 159 a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~AD-iI 236 (631)
..-++++|..+.. -+.+..|++|||+++.++|..|++.+...+ .+.+.+++..++.++...+..+.+.|.+.+|| ++
T Consensus 145 ~~~~V~~gr~~~~-~v~~~~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~ 223 (252)
T 4e22_A 145 APGLIADGRDMGT-IVFPDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALV 223 (252)
T ss_dssp SSCEEEEESSCCC-CCSTTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEE
T ss_pred CCCEEEEeceece-eecCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEE
Confidence 3457778854421 133457999999999999888876544332 35688999999988888888899999999999 67
Q ss_pred EeCC
Q 006782 237 IINK 240 (631)
Q Consensus 237 I~N~ 240 (631)
|+++
T Consensus 224 Idts 227 (252)
T 4e22_A 224 LDST 227 (252)
T ss_dssp EECS
T ss_pred EECc
Confidence 7654
No 71
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.23 E-value=1.4e-12 Score=145.95 Aligned_cols=157 Identities=13% Similarity=0.187 Sum_probs=106.1
Q ss_pred cceeEeecCce-eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEE---------EECCcccc----
Q 006782 40 EDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI---------TMDNYNDS---- 104 (631)
Q Consensus 40 ~~~ls~~~g~~-~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I---------~lDg~~~~---- 104 (631)
.+++++.++.. .++++++ .+.+|+ ++||+||||||||||+++|+|++ |+.|.+ .++|....
T Consensus 24 ~~~ls~~yg~~~~~l~~vs-~i~~Ge---~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 24 EEDCVHRYGVNAFVLYRLP-VVKEGM---VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp CCCEEEECSTTCCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hcCcEEEECCccccccCcC-cCCCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 34566666654 4899999 999999 89999999999999999999999 888874 23443211
Q ss_pred -----ccccccccCCCCCCch---hhHHHHHHHhhcccc-------ccc-cccccccccccCceeeeecCccEEEEeech
Q 006782 105 -----SRIIDGNFDDPRLTDY---DTLLENIRGLKEGKA-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (631)
Q Consensus 105 -----~~~i~~vfq~p~l~d~---~tl~e~L~~L~~g~~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~ 168 (631)
...+++++|....++. .++.+++........ +.. ...+...++.++|+.+++..+++++.++.+
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~l 179 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATF 179 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSE
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1234556665433321 256666542111111 111 123445567889999999999999999999
Q ss_pred hccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 169 lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
++.|||++.||.. ....+..+.+++.+.|.++
T Consensus 180 LlLDEPTs~LD~~-------~~~~l~~~L~~l~~~g~tv 211 (538)
T 1yqt_A 180 YFFDEPSSYLDIR-------QRLNAARAIRRLSEEGKSV 211 (538)
T ss_dssp EEEESTTTTCCHH-------HHHHHHHHHHHHHHTTCEE
T ss_pred EEEECCcccCCHH-------HHHHHHHHHHHHHhcCCEE
Confidence 9999999999983 3344455555554445543
No 72
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.22 E-value=7.3e-12 Score=128.77 Aligned_cols=164 Identities=12% Similarity=0.215 Sum_probs=100.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccc----cc--------cccccc-cCCCCCCchhhHHHHH---
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SS--------RIIDGN-FDDPRLTDYDTLLENI--- 127 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~----~~--------~~i~~v-fq~p~l~d~~tl~e~L--- 127 (631)
.++.+|+|+|++||||||+++.|+.+ +...|..|.+.. .. ...+.. +.....++...+...+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~l--g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKNL--GAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHHH--TCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHC--CCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 45789999999999999999999954 455677776521 00 011111 1111233433332111
Q ss_pred -HHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCC
Q 006782 128 -RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (631)
Q Consensus 128 -~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s 206 (631)
..+.....+..|.+......+.. .......+++|+||.+++...+...+|..|||++|.++++.|...|+ |++
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~--~~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~----g~s 224 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMD--VAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERD----GLS 224 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----CCC
T ss_pred HHHHHHhhcccChHHHHHHHHHHH--HHhccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcC----CCC
Confidence 11111233445544333222211 00112346899999988866677789999999999999887776664 889
Q ss_pred HHHHHHHHHhccccchhhcccCCCCCCeEEEeCCC
Q 006782 207 PEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (631)
Q Consensus 207 ~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (631)
.+++..++... ++.... + ..||++|.|+.
T Consensus 225 ~e~~~~ri~~q-~~~~~~-~----~~AD~vIdn~~ 253 (281)
T 2f6r_A 225 EAAAQSRLQSQ-MSGQQL-V----EQSNVVLSTLW 253 (281)
T ss_dssp HHHHHHHHHTS-CCHHHH-H----HTCSEEEECSS
T ss_pred HHHHHHHHHHc-CChHhh-H----hhCCEEEECCC
Confidence 99988888665 443322 2 36899998764
No 73
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.22 E-value=6.7e-12 Score=122.61 Aligned_cols=148 Identities=18% Similarity=0.229 Sum_probs=97.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc---------cccc-cccCCCCCCchhhHHHHH----HHhh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS---------RIID-GNFDDPRLTDYDTLLENI----RGLK 131 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~---------~~i~-~vfq~p~l~d~~tl~e~L----~~L~ 131 (631)
..+|||+|++||||||+++.|+..+ +...|..|.+.... ...| .+++ +..++...+.+.+ ..+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l-g~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~~~ 89 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY-GAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESRENLK 89 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-CCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHHHH
Confidence 4689999999999999999999986 56678888763211 0111 1233 4455554444432 1222
Q ss_pred ccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHH
Q 006782 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 211 (631)
Q Consensus 132 ~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi 211 (631)
..+.+..|.+......+.. ....++++|+.+++...+...+|..|||++|.++++.|. +.
T Consensus 90 ~l~~i~hP~i~~~~~~~~~------~~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rl--------------i~ 149 (192)
T 2grj_A 90 KLELLVHPLMKKRVQEIIN------KTSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRN--------------RE 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHH------TCCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHC--------------SS
T ss_pred HHHhhhCHHHHHHHHHHHH------HcCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHH--------------HH
Confidence 3345666766554433221 014689999999988778889999999999999977665 11
Q ss_pred HHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 212 HQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 212 ~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
.|+ |. |+++.++.||+||.|+.++
T Consensus 150 ~q~-----~~---~~~~~~~~AD~vI~n~~~~ 173 (192)
T 2grj_A 150 ADR-----RL---KFQEDIVPQGIVVANNSTL 173 (192)
T ss_dssp HHH-----HH---TTCTTCCCCSEEEECSSCH
T ss_pred hcC-----Cc---hhhhHHhcCCEEEECCCCH
Confidence 233 11 3567789999999987543
No 74
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.18 E-value=2.8e-12 Score=145.62 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=106.9
Q ss_pred ceeEeecCce-eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEE---------EECCcccc-----
Q 006782 41 DTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI---------TMDNYNDS----- 104 (631)
Q Consensus 41 ~~ls~~~g~~-~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I---------~lDg~~~~----- 104 (631)
+++++.++.. .++++++ .+++|+ ++||+||||||||||+++|+|++ |+.|.+ .++|....
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge---~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGM---VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER 170 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCC---EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhh
Confidence 4566677655 4899999 899999 99999999999999999999999 888874 23443211
Q ss_pred ----ccccccccCCCCCCc---hhhHHHHHHHhhcccc-------ccc-cccccccccccCceeeeecCccEEEEeechh
Q 006782 105 ----SRIIDGNFDDPRLTD---YDTLLENIRGLKEGKA-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (631)
Q Consensus 105 ----~~~i~~vfq~p~l~d---~~tl~e~L~~L~~g~~-------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~l 169 (631)
...+++++|....++ ..++.+++........ +.. ...+...++.++|+.+++..+++++.++.++
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lL 250 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFY 250 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 122445555533221 1267776643111111 111 2245556778899999999999999999999
Q ss_pred ccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHH
Q 006782 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (631)
Q Consensus 170 L~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e 208 (631)
+.|||++.||.. ....+.++.+++.+.|.++-
T Consensus 251 lLDEPTs~LD~~-------~~~~l~~~L~~l~~~g~tvI 282 (607)
T 3bk7_A 251 FFDEPSSYLDIR-------QRLKVARVIRRLANEGKAVL 282 (607)
T ss_dssp EEECTTTTCCHH-------HHHHHHHHHHHHHHTTCEEE
T ss_pred EEECCcccCCHH-------HHHHHHHHHHHHHhcCCEEE
Confidence 999999999983 33445555565554565543
No 75
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.15 E-value=7.3e-12 Score=142.17 Aligned_cols=145 Identities=12% Similarity=0.023 Sum_probs=102.6
Q ss_pred eeEEeeceeEeccCCc--cEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccccccccccCCCCCCchhhHHHH
Q 006782 50 FIVIRACQLLAQKNHG--IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (631)
Q Consensus 50 ~~vL~~Isl~i~~gek--p~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~ 126 (631)
..++++++|.+.+|+- .-++||+||||||||||+++|+|++ |+.|.. .....+++++|+.......++.++
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~~~~i~~~~q~~~~~~~~tv~e~ 433 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQL 433 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CCSCCEEEECSSCCCCCCSBHHHH
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------ccCCcEEEecccccccCCccHHHH
Confidence 4578999999998821 0289999999999999999999999 887752 223457888888766555577777
Q ss_pred HHHhhcccc------------ccc-cccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHH
Q 006782 127 IRGLKEGKA------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLV 193 (631)
Q Consensus 127 L~~L~~g~~------------I~~-Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLi 193 (631)
+.....+.. +.+ ...+...++.++|+.+++..+++++.++.+++.|||+..+|.. ....+
T Consensus 434 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~-------~~~~i 506 (608)
T 3j16_B 434 FFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE-------QRIIC 506 (608)
T ss_dssp HHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHH-------HHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH-------HHHHH
Confidence 643211110 001 2234455678899999999999999999999999999999973 33334
Q ss_pred HHHHHHHH-HhCCCH
Q 006782 194 KRVFRDIQ-RVGQEP 207 (631)
Q Consensus 194 RRI~RDv~-erG~s~ 207 (631)
.++.+++. +.|.++
T Consensus 507 ~~ll~~l~~~~g~tv 521 (608)
T 3j16_B 507 SKVIRRFILHNKKTA 521 (608)
T ss_dssp HHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHhCCCEE
Confidence 44445442 346654
No 76
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.13 E-value=4.2e-11 Score=117.09 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=49.4
Q ss_pred ccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCC--CHHHHHHHHHhccccchhhcccCCCCCC-eE
Q 006782 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTA-HI 235 (631)
Q Consensus 159 a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~--s~e~Vi~q~~~~v~P~~~~fIeP~k~~A-Di 235 (631)
...++++|..+. ..+...+|++||++++.++++.|+..+ +.++|+ +.+++..++..++.+.|.++++|....+ ++
T Consensus 123 ~~~~vldg~~~~-~~~~~~~d~~i~l~~~~e~~~~R~~~~-l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~ 200 (227)
T 1cke_A 123 LPGLIADGRDMG-TVVFPDAPVKIFLDASSEERAHRRMLQ-LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADAL 200 (227)
T ss_dssp TTCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHH-HHHHTCCCCHHHHHHHHC-------------CCCCTTCE
T ss_pred CCCEEEECCCcc-ceEecCCCEEEEEeCCHHHHHHHHHHH-HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEE
Confidence 457888998432 345567899999999999987776543 445677 7888989998887788888888887664 57
Q ss_pred EEeCC
Q 006782 236 KIINK 240 (631)
Q Consensus 236 II~N~ 240 (631)
+|+|+
T Consensus 201 ~Id~~ 205 (227)
T 1cke_A 201 VLDST 205 (227)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 77765
No 77
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.13 E-value=9.5e-12 Score=147.22 Aligned_cols=129 Identities=17% Similarity=0.194 Sum_probs=95.3
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc-ccccccccCCC-CCCc
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-SRIIDGNFDDP-RLTD 119 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~-~~~i~~vfq~p-~l~d 119 (631)
++++.++...+|+++||.+.+|+ ++||+||||||||||+++|++- .| +|+... ...+++++|++ .+++
T Consensus 440 ~ls~~yg~~~iL~~vsl~I~~Ge---~v~LiGpNGsGKSTLLk~LagG-----~i--~g~~~~~~~~~~~v~q~~~~~~~ 509 (986)
T 2iw3_A 440 EFSLAYGAKILLNKTQLRLKRAR---RYGICGPNGCGKSTLMRAIANG-----QV--DGFPTQEECRTVYVEHDIDGTHS 509 (986)
T ss_dssp EEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHHT-----CS--TTCCCTTTSCEEETTCCCCCCCT
T ss_pred eEEEEECCEEeEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCC-----Cc--CCCccccceeEEEEccccccccc
Confidence 66677788889999999999999 8999999999999999999962 22 333211 12356777764 5566
Q ss_pred hhhHHHHHHHhhcc---------ccccc--cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 120 YDTLLENIRGLKEG---------KAVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 120 ~~tl~e~L~~L~~g---------~~I~~--Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
..++.+++.....+ ..+.. ...+...+..++|+++++..+++++.++.+++.|||++.+|.
T Consensus 510 ~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~ 581 (986)
T 2iw3_A 510 DTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581 (986)
T ss_dssp TSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCH
T ss_pred CCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence 67888887531001 01111 122444567889999999999999999999999999999997
No 78
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.13 E-value=3.7e-12 Score=150.72 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=48.9
Q ss_pred eeEeecCc--eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECC
Q 006782 42 TLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (631)
Q Consensus 42 ~ls~~~g~--~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg 100 (631)
++++.++. ..+|+++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+++
T Consensus 676 nLs~~Y~g~~~~iL~dVSl~I~~Ge---ivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 676 NMEFQYPGTSKPQITDINFQCSLSS---RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp EEEECCTTCSSCSEEEEEEEEETTC---EEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred eeEEEeCCCCceeeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 34444432 568999999999999 89999999999999999999999 8999999875
No 79
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=99.12 E-value=4.1e-10 Score=113.40 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=103.9
Q ss_pred ceeeeecCCCCCCchhccceeeeeecCCEEEEEEeeeecCCCeeecceeEeeee--------------------hhhHHH
Q 006782 279 ETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVS--------------------VRLLGG 338 (631)
Q Consensus 279 ~f~DIYl~pP~~d~~~tde~LRvR~~dg~~~LtykG~~~d~p~isrp~~ef~V~--------------------v~il~G 338 (631)
.+.|+||..|..++...+.|||+|..++ +|+|.|-..+---.+++.+ ++. -.+...
T Consensus 53 ~q~n~YfDTpd~~L~~~~~aLRiR~~~~---~tlK~p~~~g~~~~~~ey~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (234)
T 3bhd_A 53 TFRDTYYDTPELSLMQADHWLRRREDSG---WELKCPGAAGVLGPHTEYK-ELTAEPTIVAQLCKVLRADGLGAGDVAAV 128 (234)
T ss_dssp EEEEEEEECTTCHHHHTTCEEEEETTTE---EEEEEESSBTTBCTTSEEE-EECSHHHHHHHHHHHHTC---CCSSHHHH
T ss_pred eEEEEEeeCCChHHHhCCcEEEEECCCC---eEEecCCccCccCCcceec-cccCccchhhhhhhhhcCCccchhHHHHH
Confidence 4559999999999999999999998774 7788776543110122222 222 134445
Q ss_pred HhhcCCeEEEEEEeeeeEeec--------C-cEEEEeecccccCcceEEEE---------eccHHHHHHHHHHcCCCCCc
Q 006782 339 LMALGYTIATILKRSSHIFYD--------D-RVCVKTDWLEQLNRKYVQVQ---------GRDRLYVKYVGEQLGLDGSY 400 (631)
Q Consensus 339 L~~LGy~~~a~v~k~re~y~~--------~-~~~i~lD~ve~Lg~~FveI~---------g~~~~~v~~~~~~Lgl~g~~ 400 (631)
|..+||.+++.+.+.|+.|.. + ++.|+||.++ +|.+|+||+ ....+.+.+++.+|||..+.
T Consensus 129 L~~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~G~~~~ElElEl~~~~~~~~~~~~l~~la~~Lgl~~~~ 207 (234)
T 3bhd_A 129 LGPLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-FGYAVGEVEALVHEEAEVPTALEKIHRLSSMLGVPAQE 207 (234)
T ss_dssp HHHHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-TSCEEEEEEEEESSGGGHHHHHHHHHHHHHHHTCCTTC
T ss_pred HhcCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-CCCEEEEEEEEeCCcccchHHHHHHHHHHHHcCCCccc
Confidence 567999999999999999988 8 9999999999 996699996 23677899999999999889
Q ss_pred cchhhHHHHHHhhhccc
Q 006782 401 VPRTYIEQIQLEKLVND 417 (631)
Q Consensus 401 i~kSYLEli~lek~~~~ 417 (631)
++++|++.+ ++..-++
T Consensus 208 ~~~~k~~~~-l~~~~~~ 223 (234)
T 3bhd_A 208 TAPAKLIVY-LQRFRPQ 223 (234)
T ss_dssp CCCCHHHHH-HHHHCHH
T ss_pred cchHHHHHH-HHHhCHH
Confidence 999999999 7765443
No 80
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.12 E-value=3.4e-11 Score=119.58 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=108.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccc-----cc---cc----cc-cccCCCCCCchhhHHHHHH----
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-----SS---RI----ID-GNFDDPRLTDYDTLLENIR---- 128 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~-----~~---~~----i~-~vfq~p~l~d~~tl~e~L~---- 128 (631)
++-|||+|+.||||||+++.|.. + +...|..|.... .. .. .| .+++.....|...+.+.+.
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~-g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~ 86 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-R-GASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDED 86 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-C-CCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHH
Confidence 46799999999999999999998 4 566777776311 00 11 11 1333334556555555543
Q ss_pred HhhccccccccccccccccccCceeeeecCccEEEEeechhcc-ccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 129 ~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~-dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
.+...+.+.+|........... -...+++++|.++++. ..+...+|..|+|++|.++++.|.+.|+ |.+.
T Consensus 87 ~~~~L~~i~HP~I~~~~~~~~~-----~~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd----g~s~ 157 (210)
T 4i1u_A 87 ARRRLEAITHPLIRAETEREAR-----DAQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN----GFTR 157 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----TCCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH----CCCH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH-----hcCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcC----CCCH
Confidence 2233345666654333222211 0134689999999998 7788899999999999999887777766 9999
Q ss_pred HHHHHHHHhccccchhhcccCCCCCCeEEEeCC-CCC
Q 006782 208 EEIIHQISETVYPMYKAFIEPDLQTAHIKIINK-FNP 243 (631)
Q Consensus 208 e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~-~~p 243 (631)
+++..++... +|. ++.++.||+||.|+ .++
T Consensus 158 eea~~ri~~Q-~~~-----eek~~~AD~VIdN~~gsl 188 (210)
T 4i1u_A 158 EQVEAIIARQ-ATR-----EARLAAADDVIVNDAATP 188 (210)
T ss_dssp HHHHHHHHHS-CCH-----HHHHHTCSEEEECSSCCH
T ss_pred HHHHHHHHHc-CCh-----HHHHHhCCEEEECCCCCH
Confidence 9999888543 454 34458899999987 544
No 81
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.12 E-value=3.6e-11 Score=116.31 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=85.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc---c--c-------cccc-ccCCCCCCchhhHHHHHHH----
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS---S--R-------IIDG-NFDDPRLTDYDTLLENIRG---- 129 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~---~--~-------~i~~-vfq~p~l~d~~tl~e~L~~---- 129 (631)
++|||+|++||||||+++.|++ + +...+..|.+... . . ..+. .+......+...+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-l-g~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-L-GVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-T-TCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-C-CCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 5899999999999999999998 4 3445555543211 0 0 0010 0110111121111111100
Q ss_pred hhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHH
Q 006782 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (631)
Q Consensus 130 L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~ 209 (631)
+.....+..|.+......... ......+|+++.+++...+...+|..|||+++.++++.|...|+ |.+.++
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~~-----~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~e~ 151 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKLA-----EQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRD----NNNFEQ 151 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----TCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC---------CHHH
T ss_pred HHHHHhccCHHHHHHHHHHHH-----hcCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence 000011223333222111110 01134788999877655567889999999999999887776664 778888
Q ss_pred HHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
+.+++... .+. +|..+.||++|.|+.++
T Consensus 152 ~~~r~~~q-~~~-----~~~~~~ad~vIdn~~~~ 179 (206)
T 1jjv_A 152 IQRIMNSQ-VSQ-----QERLKWADDVINNDAEL 179 (206)
T ss_dssp HHHHHHHS-CCH-----HHHHHHCSEEEECCSCH
T ss_pred HHHHHHhc-CCh-----HHHHHhCCEEEECCCCc
Confidence 88887542 232 33345799999887543
No 82
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.07 E-value=1.9e-11 Score=117.44 Aligned_cols=161 Identities=15% Similarity=0.140 Sum_probs=81.8
Q ss_pred eeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc-------ccccccccCCCCCCchhhHHHHHHH
Q 006782 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRG 129 (631)
Q Consensus 57 sl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~-------~~~i~~vfq~p~l~d~~tl~e~L~~ 129 (631)
|+.+.+|+ ++||+||||||||||+++|++.+| .+.+++.... ...++++|+++..|...++.+++..
T Consensus 1 s~~m~~g~---ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKAN---LFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCC---EEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCc---EEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEe
Confidence 34566777 999999999999999999999985 3444443211 1346788887765554443322211
Q ss_pred hhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCc--EEEEEEcChhhHHHHHHHHHHHHhC-CC
Q 006782 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID--LRVSVTGGVHFDLVKRVFRDIQRVG-QE 206 (631)
Q Consensus 130 L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lD--lkIfVdad~d~rLiRRI~RDv~erG-~s 206 (631)
.. .+....|... ... ....+.....+++++.......+...++ ..||+.++....+.+|+. .|| .+
T Consensus 75 ~~---~~~~~~~~~~-~~~---i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~----~R~~~~ 143 (205)
T 3tr0_A 75 HA---TIYERHYGTE-KDW---VLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLI----KRRQDD 143 (205)
T ss_dssp EE---EETTEEEEEE-HHH---HHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHH----TCTTSC
T ss_pred ee---eeecccccch-HHH---HHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHH----HhCCCC
Confidence 00 0000001000 000 0011234456777754333222222222 567888765555555543 334 34
Q ss_pred HHHHHHHHHhccccchhhcccCCCCCCeEEEeCC
Q 006782 207 PEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (631)
Q Consensus 207 ~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (631)
.+.+.+++ ....+.. .....||+||.|+
T Consensus 144 ~~~i~~rl-~~~~~~~-----~~~~~~d~vi~n~ 171 (205)
T 3tr0_A 144 TAIIEQRL-ALAREEM-----AHYKEFDYLVVND 171 (205)
T ss_dssp SSTHHHHH-HHHHHHH-----TTGGGCSEEEECS
T ss_pred HHHHHHHH-HHHHHHH-----hcccCCCEEEECC
Confidence 44444444 3323322 2236789999876
No 83
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.03 E-value=2.9e-11 Score=128.21 Aligned_cols=153 Identities=13% Similarity=0.139 Sum_probs=96.5
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc-cccccccCCCCCCchhhHHHHHHHhhcccccccccccccc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS 145 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~-~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~ 145 (631)
.+|+|+||+|||||||++.|+..+ ....|+.|++.... ..++. ..|..-....+..++..+..+.. ..+.++|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l-~~~iis~Ds~qvYr~~~i~T--akp~~eE~~~v~hhl~di~~~~~-~~~~~dF~~ 83 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF-NGEIISGDSMQVYQGMDIGT--AKVTTEEMEGIPHYMIDILPPDA-SFSAYEFKK 83 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TEEEEECCSSTTBTTCCTTT--TCCCTTTTTTCCEESSSCBCTTS-CCCHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc-CCceeccccccccccccccc--cCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHHH
Confidence 489999999999999999999998 45688999872211 01110 00100000000001111122222 456666665
Q ss_pred ccccCceeeeecCccEEEEeechhccccccCCCcEEEEEE-cChh--hHHHHHHHHHHHHhCCCHHHHHHHHHhccccch
Q 006782 146 SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT-GGVH--FDLVKRVFRDIQRVGQEPEEIIHQISETVYPMY 222 (631)
Q Consensus 146 ~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVd-ad~d--~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~ 222 (631)
+.+..-.........+|+++|..++.+.+...+| +|++ +|.+ +|+.+++.| +.++|. +++++|+..+.|.+
T Consensus 84 ~a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~---~~l~~~L~~vdP~~ 157 (340)
T 3d3q_A 84 RAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNN---NKLHEYLASFDKES 157 (340)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCH---HHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCH---HHHHHHHHhhCcHH
Confidence 4432211111245678889999987788888887 6788 8887 678888888 777775 47899999999999
Q ss_pred hhcccCC
Q 006782 223 KAFIEPD 229 (631)
Q Consensus 223 ~~fIeP~ 229 (631)
..+|.|.
T Consensus 158 a~~I~p~ 164 (340)
T 3d3q_A 158 AKDIHPN 164 (340)
T ss_dssp HHHSCTT
T ss_pred HhhcCcc
Confidence 9999884
No 84
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.02 E-value=2.1e-10 Score=113.33 Aligned_cols=169 Identities=17% Similarity=0.120 Sum_probs=81.8
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc--------ccccccccCCCCCCchhh
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--------SRIIDGNFDDPRLTDYDT 122 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~--------~~~i~~vfq~p~l~d~~t 122 (631)
..|++|||.+++|+ +++|+||||||||||+++|++++| |.|.+ +.... ...++++||++.+|+..+
T Consensus 11 ~~l~~isl~i~~G~---~~~lvGpsGsGKSTLl~~L~g~~p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIY---PLVICGPSGVGKGTLIKKLLNEFP--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCC---CEEEECSTTSSHHHHHHHHHHHST--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCC---EEEEECCCCCCHHHHHHHHHhhCC--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 35899999999999 899999999999999999999986 77777 54221 135778888776554321
Q ss_pred HHHHHHHhhccccccccccccccccccC-ceeeeecCccEEEEeechhccccccCCC---c-EEEEEEcChhhHHHHHHH
Q 006782 123 LLENIRGLKEGKAVQVPIYDFKSSSRIG-YRTLEVPSSRIVIIEGIYALSEKLRPLI---D-LRVSVTGGVHFDLVKRVF 197 (631)
Q Consensus 123 l~e~L~~L~~g~~I~~Pvyd~~~~~rs~-~~~~~v~~a~VLIvEGi~lL~dEl~~~l---D-lkIfVdad~d~rLiRRI~ 197 (631)
. .+..+....|......... .....+....+++++..+......+..+ + ..+|+..+....+.++
T Consensus 85 ~--------~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~-- 154 (218)
T 1z6g_A 85 K--------NEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR-- 154 (218)
T ss_dssp H--------TTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH--
T ss_pred h--------ccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH--
Confidence 0 1111111111100000000 0000112233444442222223344444 4 7788887655544433
Q ss_pred HHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCeEEEeCC
Q 006782 198 RDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (631)
Q Consensus 198 RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (631)
...++...+..+.+.....++... +.. ...+|.||.++
T Consensus 155 --~~~~d~~~~~~i~~~l~~~~~~~~-~~h--~~~~d~iiv~~ 192 (218)
T 1z6g_A 155 --LLTRNTENQEQIQKRMEQLNIELH-EAN--LLNFNLSIIND 192 (218)
T ss_dssp --HHHTCCCCHHHHHHHHHHHHHHHH-HHT--TSCCSEEEECS
T ss_pred --HHhcCCCCHHHHHHHHHHHHHHHH-hhc--ccCCCEEEECC
Confidence 334565444444444444444433 222 36788888654
No 85
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.99 E-value=1.2e-11 Score=117.18 Aligned_cols=85 Identities=19% Similarity=0.080 Sum_probs=68.1
Q ss_pred ceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc--cccccccCCCCCC
Q 006782 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS--RIIDGNFDDPRLT 118 (631)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~--~~i~~vfq~p~l~ 118 (631)
.++++.++...+++++||.+++|+ +++|+||||||||||+++|++.+|..|.|.++++.... ....+++|++.+|
T Consensus 11 ~~~~~~~g~~~~l~~vsl~i~~Ge---~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~ 87 (158)
T 1htw_A 11 EFSMLRFGKKFAEILLKLHTEKAI---MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLY 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCE---EEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHHHHHHhccccccCCCC---EEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCCCcceeccccc
Confidence 334445555678999999999999 99999999999999999999999888999999886532 1123688998888
Q ss_pred chhhHHHHHHH
Q 006782 119 DYDTLLENIRG 129 (631)
Q Consensus 119 d~~tl~e~L~~ 129 (631)
..++.+++..
T Consensus 88 -~ltv~e~l~~ 97 (158)
T 1htw_A 88 -RLADPEELEF 97 (158)
T ss_dssp -TCSCTTHHHH
T ss_pred -cCCcHHHHHH
Confidence 7788777754
No 86
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.97 E-value=5.9e-11 Score=135.84 Aligned_cols=61 Identities=7% Similarity=-0.001 Sum_probs=44.9
Q ss_pred ccccccccCceeeeecCccEEEEee---chhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHH
Q 006782 142 DFKSSSRIGYRTLEVPSSRIVIIEG---IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (631)
Q Consensus 142 d~~~~~rs~~~~~~v~~a~VLIvEG---i~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~ 209 (631)
+...++.++|+.+++..+++++.++ .+++.|||+..+|.. ....+..+.+++.+.|.|+--
T Consensus 538 ~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~-------~~~~i~~~l~~l~~~g~tvi~ 601 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD-------DIARLLDVLHRLVDNGDTVLV 601 (670)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHH-------HHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHH-------HHHHHHHHHHHHHHCCCEEEE
Confidence 4445678899999999999998876 488889999999983 444555566666555655433
No 87
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.97 E-value=2.2e-10 Score=110.43 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=85.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccccc-----cccc---ccCCCCCCc--hhhHHHHHHHhhcc---
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR-----IIDG---NFDDPRLTD--YDTLLENIRGLKEG--- 133 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~-----~i~~---vfq~p~l~d--~~tl~e~L~~L~~g--- 133 (631)
.+|+|+|++||||||+++.|++ + +...+..|.+..... .+.. .|.. ..++ .......+..+...
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~-g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~-~~~~~~g~~~r~~l~~~~f~~~~ 78 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L-GAYVLDADKLIHSFYRKGHPVYEEVVKTFGK-GILDEEGNIDRKKLADIVFKDEE 78 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T-TCEEEEHHHHHHGGGSSSSHHHHHHHHHHCT-TTTEETTEECHHHHHHTTSSCHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C-CCEEEEccHHHHHHhcCCHHHHHHHHHHhCH-HhhCCCCcCCHHHHHHHHhCCHH
Confidence 4799999999999999999999 6 566777776532100 0000 0100 0000 00011111111000
Q ss_pred -----ccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHH
Q 006782 134 -----KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (631)
Q Consensus 134 -----~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e 208 (631)
..+..|.+......... ......++|+||.+++...+...+|..|||+++.+++..|... ||.+.+
T Consensus 79 ~~~~l~~l~~~~v~~~~~~~~~----~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~-----R~~~~~ 149 (204)
T 2if2_A 79 KLRKLEEITHRALYKEIEKITK----NLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIK-----RGMSEE 149 (204)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHH----HSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHH-----TCCCHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHH----hccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHH-----cCCCHH
Confidence 01111221111110000 0111168899999877666667899999999999886655443 378888
Q ss_pred HHHHHHHhccccchhhcccCCCCCCeEEEeCCC
Q 006782 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (631)
Q Consensus 209 ~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (631)
++..++... .+. .+....||++|.|+.
T Consensus 150 ~~~~~~~~~-~~~-----~~~~~~ad~vId~~~ 176 (204)
T 2if2_A 150 DFERRWKKQ-MPI-----EEKVKYADYVIDNSG 176 (204)
T ss_dssp HHHHHHTTS-CCH-----HHHGGGCSEECCCSS
T ss_pred HHHHHHHhC-CCh-----hHHHhcCCEEEECCC
Confidence 877777443 332 233456899887653
No 88
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.96 E-value=5.3e-11 Score=135.12 Aligned_cols=165 Identities=10% Similarity=0.092 Sum_probs=100.1
Q ss_pred Cceeeeeccc----eeEeecCce-eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEE--------
Q 006782 32 DRYEIVPIED----TLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-------- 97 (631)
Q Consensus 32 ~~~ei~~v~~----~ls~~~g~~-~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~-------- 97 (631)
+.+.++++++ ++++.|+.. .+++++. .+.+|+ ++||+||||||||||+++|+|++ |+.|.|.
T Consensus 68 ~~i~i~nl~~~~~~~~~~~Y~~~~~~l~~l~-~~~~Ge---i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~ 143 (608)
T 3j16_B 68 DAIQIINLPTNLEAHVTHRYSANSFKLHRLP-TPRPGQ---VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEI 143 (608)
T ss_dssp CCEEEEEESSSSSTTEEEECSTTSCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHH
T ss_pred cceEEecCChhhcCCeEEEECCCceeecCCC-CCCCCC---EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhh
Confidence 4567777763 355666532 3566666 478899 99999999999999999999999 8888773
Q ss_pred ---ECCccccc-------ccccc--ccCCCCCC------chhhHHHHHHHhhcc---------ccccc-ccccccccccc
Q 006782 98 ---MDNYNDSS-------RIIDG--NFDDPRLT------DYDTLLENIRGLKEG---------KAVQV-PIYDFKSSSRI 149 (631)
Q Consensus 98 ---lDg~~~~~-------~~i~~--vfq~p~l~------d~~tl~e~L~~L~~g---------~~I~~-Pvyd~~~~~rs 149 (631)
+.|..... ..+.. .++....+ ...++.+.+...... ..+.. ...+...++.+
T Consensus 144 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 223 (608)
T 3j16_B 144 IKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLS 223 (608)
T ss_dssp HHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCC
T ss_pred hheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCC
Confidence 22211100 01110 11111100 011222222211000 00111 23455567888
Q ss_pred CceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 150 GYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 150 ~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
+|+.+++..+++++.++.+++.|||++.||.. ....+.++.+.+.+.|.++
T Consensus 224 gGe~Qrv~iAraL~~~p~llllDEPts~LD~~-------~~~~l~~~l~~l~~~g~tv 274 (608)
T 3j16_B 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDVK-------QRLNAAQIIRSLLAPTKYV 274 (608)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHH-------HHHHHHHHHHGGGTTTCEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECcccCCCHH-------HHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999973 3334455555555555543
No 89
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.93 E-value=9e-10 Score=109.46 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=60.5
Q ss_pred ccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCC--CHHHHHHHHHhccccchhhcccCCCCCCe-E
Q 006782 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAH-I 235 (631)
Q Consensus 159 a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~--s~e~Vi~q~~~~v~P~~~~fIeP~k~~AD-i 235 (631)
...++++|.... ..+...+|++|||+++.++++.|++.|.. .||. +.+++..++..++++.+.+++.|....+| +
T Consensus 135 ~~~~v~~g~~~~-~~~l~~~d~vi~L~a~~e~~~~R~~~~~~-~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~ 212 (236)
T 1q3t_A 135 QGGIVMDGRDIG-TVVLPQAELKIFLVASVDERAERRYKENI-AKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAV 212 (236)
T ss_dssp TSCEEEECSSCS-SSSGGGCSEEEEEECCHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCE
T ss_pred cCCEEEECCcch-hhhccCCCEEEEEECCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEE
Confidence 446777887542 22445679999999999998877766643 4554 88899999987788888888999888877 8
Q ss_pred EEeCC
Q 006782 236 KIINK 240 (631)
Q Consensus 236 II~N~ 240 (631)
+|+|+
T Consensus 213 vId~~ 217 (236)
T 1q3t_A 213 YLDTT 217 (236)
T ss_dssp EEECS
T ss_pred EEcCC
Confidence 88765
No 90
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.91 E-value=1.7e-09 Score=109.04 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=60.7
Q ss_pred cEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCCCCCe-EEE
Q 006782 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKI 237 (631)
Q Consensus 160 ~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~e-rG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~AD-iII 237 (631)
.-+|+||--+- .-+.+..|++|||+++.+.|..||..+.... .+.+.+++..++.++...+..+++.|.+.++| ++|
T Consensus 129 ~~~V~~GRd~g-t~V~pda~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~I 207 (233)
T 3r20_A 129 GRVVVEGRDIG-TVVLPDADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVV 207 (233)
T ss_dssp SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEE
T ss_pred CcEEEecccce-eEEcCCCCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEE
Confidence 56788886332 1123346899999999999988887655433 46789999999999999999999999999998 555
Q ss_pred eC
Q 006782 238 IN 239 (631)
Q Consensus 238 ~N 239 (631)
++
T Consensus 208 DT 209 (233)
T 3r20_A 208 DT 209 (233)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 91
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.90 E-value=2.4e-09 Score=104.48 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=89.0
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc----c--------ccccc-ccCCCCCCchhhHHHHHHH--
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----S--------RIIDG-NFDDPRLTDYDTLLENIRG-- 129 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~----~--------~~i~~-vfq~p~l~d~~tl~e~L~~-- 129 (631)
++.+|+|+|++||||||+++.|+. + +...|..|.+... . ...+. .+.....++...+.+.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l-g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~ 80 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L-GINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANP 80 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c-CCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCH
Confidence 356999999999999999999998 4 4455665543211 0 01111 1221222333333322210
Q ss_pred --hhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 130 --LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 130 --L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
+.....+..|.+......... .. ....+++++.+++...+...+|..|||+++.++++.|...|+ |.+.
T Consensus 81 ~~~~~l~~~~~p~v~~~~~~~~~----~~-~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~ 151 (218)
T 1vht_A 81 EEKNWLNALLHPLIQQETQHQIQ----QA-TSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRD----DVTR 151 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HC-CSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----TCCH
T ss_pred HHHHHHHHhHCHHHHHHHHHHHH----hc-CCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcC----CCCH
Confidence 001112223333211111110 00 124677888776654466778999999999988766554443 7788
Q ss_pred HHHHHHHHhccccchhhcccCCCCCCeEEEeCCCCC
Q 006782 208 EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 208 e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (631)
+++...+... .+.+. ....||++|+|+.++
T Consensus 152 ~~~~~~~~~~-~~~~~-----~~~~ad~vId~~~~~ 181 (218)
T 1vht_A 152 EHVEQILAAQ-ATREA-----RLAVADDVIDNNGAP 181 (218)
T ss_dssp HHHHHHHHHS-CCHHH-----HHHHCSEEEECSSCT
T ss_pred HHHHHHHHhc-CChHH-----HHHhCCEEEECCCCH
Confidence 7777776543 33332 234579999877544
No 92
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.86 E-value=1.8e-11 Score=121.55 Aligned_cols=164 Identities=12% Similarity=0.093 Sum_probs=88.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc-----------------cccccccCCCCCCchhhHHHHHHH
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-----------------RIIDGNFDDPRLTDYDTLLENIRG 129 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~-----------------~~i~~vfq~p~l~d~~tl~e~L~~ 129 (631)
.+|+|.|++||||||++++|++. .|.|.+.+..... ..++++||.+.++.. ....+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~--~~~~~~~ 95 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTM--LQSHTAP 95 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG---TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHH--HHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc---cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHHH--HHHHHhc
Confidence 49999999999999999999987 3445555432110 112233332211110 1111110
Q ss_pred -----hhccccccccccccccccccCceeeeecCccEEEEeechhccc-cccCCCcEEEEEEcChhhHHHHHHHHHHHHh
Q 006782 130 -----LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV 203 (631)
Q Consensus 130 -----L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~d-El~~~lDlkIfVdad~d~rLiRRI~RDv~er 203 (631)
+..+..+..+.|.++.....++ .+.+..+.++++++.+.. ......|+.||+++|.++++.|... |
T Consensus 96 ~i~~~l~~~r~v~~dry~~s~~ayq~~---~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~~-----R 167 (230)
T 2vp4_A 96 TNKKLKIMERSIFSARYCFVENMRRNG---SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQ-----R 167 (230)
T ss_dssp CCSSEEEEESCHHHHHHTHHHHHHHHT---SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHH-----H
T ss_pred cccCceeecCCccccHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHHH-----c
Confidence 1123344445565554433221 234445566666665543 3566799999999999997666433 3
Q ss_pred CCCHHHH-HHHHHhccccchhhcccCC--CCCCe-EEEeCCCCC
Q 006782 204 GQEPEEI-IHQISETVYPMYKAFIEPD--LQTAH-IKIINKFNP 243 (631)
Q Consensus 204 G~s~e~V-i~q~~~~v~P~~~~fIeP~--k~~AD-iII~N~~~p 243 (631)
|++.+.. ...|.+.++..|..+.+.. ...++ ++|+++.++
T Consensus 168 ~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~ 211 (230)
T 2vp4_A 168 ARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNL 211 (230)
T ss_dssp CCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC--
T ss_pred CCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCH
Confidence 5543321 1245566677777776433 34455 666555433
No 93
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.83 E-value=1.1e-09 Score=104.97 Aligned_cols=161 Identities=17% Similarity=0.158 Sum_probs=69.2
Q ss_pred EeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCce-EEEECCccc---cccccccccCCCCCCchhhHHHHHHHhhcc
Q 006782 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYND---SSRIIDGNFDDPRLTDYDTLLENIRGLKEG 133 (631)
Q Consensus 59 ~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G-~I~lDg~~~---~~~~i~~vfq~p~l~d~~tl~e~L~~L~~g 133 (631)
.+.+|. +|+|+|||||||||++++|++.+ |+.| .+....... ....++++|+++..+. .+ ...+
T Consensus 2 ~i~~g~---~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~ 70 (207)
T 2j41_A 2 DNEKGL---LIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFE------AL--IKDD 70 (207)
T ss_dssp --CCCC---EEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHH------HH--HHTT
T ss_pred CCCCCC---EEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHH------HH--HHcC
Confidence 455666 89999999999999999999998 6554 221111111 0112456666543221 11 1223
Q ss_pred ccccccccccccccccCc-eeeeecCccEEEEeechhccccccCCC-c-EEEEEEcChhhHHHHHHHHHHHHhC-CCHHH
Q 006782 134 KAVQVPIYDFKSSSRIGY-RTLEVPSSRIVIIEGIYALSEKLRPLI-D-LRVSVTGGVHFDLVKRVFRDIQRVG-QEPEE 209 (631)
Q Consensus 134 ~~I~~Pvyd~~~~~rs~~-~~~~v~~a~VLIvEGi~lL~dEl~~~l-D-lkIfVdad~d~rLiRRI~RDv~erG-~s~e~ 209 (631)
..+..+.+.......... ....+.....+++++.+.....+...+ | +.+|+..+....+.+|+.. |+ .+.+.
T Consensus 71 ~~~~~~~~~~~~~g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~----R~~~~~~~ 146 (207)
T 2j41_A 71 QFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVG----RGTESDEK 146 (207)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC----------------------
T ss_pred CeEEEEeECCeecCCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHh----cCCCCHHH
Confidence 333333332211000000 001123346888998877655455444 7 4455543332233444332 23 34444
Q ss_pred HHHHHHhccccchhhcccCCCCCCeEEEeCC
Q 006782 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (631)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (631)
+..++ ...++... ....||++|.|+
T Consensus 147 ~~~rl-~~~~~~~~-----~~~~~d~vI~n~ 171 (207)
T 2j41_A 147 IQSRI-NEARKEVE-----MMNLYDYVVVND 171 (207)
T ss_dssp ----------CGGG-----GGGGCSEEEECS
T ss_pred HHHHH-HHHHHHHh-----ccccCCEEEECC
Confidence 44433 22223221 235689998775
No 94
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.82 E-value=3e-10 Score=127.25 Aligned_cols=134 Identities=13% Similarity=0.161 Sum_probs=85.3
Q ss_pred ccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEE-----------EECCcccc---------cc----ccccccCCC
Q 006782 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI-----------TMDNYNDS---------SR----IIDGNFDDP 115 (631)
Q Consensus 61 ~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I-----------~lDg~~~~---------~~----~i~~vfq~p 115 (631)
++|+ ++||+||||||||||+++|+|++ |+.|.| .++|.... .. .+.++.+.+
T Consensus 23 ~~Ge---i~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 23 KNNT---ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CTTE---EEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 3566 99999999999999999999999 888887 34443211 00 112222222
Q ss_pred CCCchhhHHHHHHHhhcccc-------cc-ccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcC
Q 006782 116 RLTDYDTLLENIRGLKEGKA-------VQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGG 187 (631)
Q Consensus 116 ~l~d~~tl~e~L~~L~~g~~-------I~-~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad 187 (631)
.++. .++.+.+........ +. ....+...++.++|+.+++..+++++.++.+++.|||++.+|..
T Consensus 100 ~~~~-~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~------ 172 (538)
T 3ozx_A 100 KFLK-GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR------ 172 (538)
T ss_dssp TTCC-SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH------
T ss_pred hhcc-CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH------
Confidence 2222 244444432211110 11 12235556778899999999999999999999999999999983
Q ss_pred hhhHHHHHHHHHHHHhCCC
Q 006782 188 VHFDLVKRVFRDIQRVGQE 206 (631)
Q Consensus 188 ~d~rLiRRI~RDv~erG~s 206 (631)
....+.++.+.+.+ |.+
T Consensus 173 -~~~~l~~~l~~l~~-g~t 189 (538)
T 3ozx_A 173 -ERMNMAKAIRELLK-NKY 189 (538)
T ss_dssp -HHHHHHHHHHHHCT-TSE
T ss_pred -HHHHHHHHHHHHhC-CCE
Confidence 33344455555533 544
No 95
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.80 E-value=4e-10 Score=115.56 Aligned_cols=111 Identities=12% Similarity=0.033 Sum_probs=62.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc----cccccccCCCCCCchhhHHHHHHHhhcc--ccccc-
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS----RIIDGNFDDPRLTDYDTLLENIRGLKEG--KAVQV- 138 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~----~~i~~vfq~p~l~d~~tl~e~L~~L~~g--~~I~~- 138 (631)
+.+||+||||||||||+++|++.. |+.|.|.++|..... +.+++++|++.++...++.+++...... .....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 579999999999999999999998 899999998864322 4578899988877777776665432211 11000
Q ss_pred -------cccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 139 -------PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 139 -------Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
...+......++++.+++..+++++. +++.|+++..+|.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~ 128 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRP 128 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCH
Confidence 11112234567788888888888765 5556777776664
No 96
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.77 E-value=1.3e-10 Score=127.90 Aligned_cols=121 Identities=10% Similarity=-0.004 Sum_probs=89.5
Q ss_pred eceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCce-E-EEECCccccccccccccCCCCCCc---hhhHHHHHH
Q 006782 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-V-ITMDNYNDSSRIIDGNFDDPRLTD---YDTLLENIR 128 (631)
Q Consensus 55 ~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G-~-I~lDg~~~~~~~i~~vfq~p~l~d---~~tl~e~L~ 128 (631)
+++|.+++|+ +++|+||||||||||+|+|++++ |+.| . |.+|+. ..+.++++||++.++. ..++.+++
T Consensus 130 ~vsl~i~~Ge---~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~--~~~~i~~vpq~~~l~~~~~~~tv~eni- 203 (460)
T 2npi_A 130 KIRMSNFEGP---RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD--PQQPIFTVPGCISATPISDILDAQLPT- 203 (460)
T ss_dssp HHHHHSSSCC---CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC--TTSCSSSCSSCCEEEECCSCCCTTCTT-
T ss_pred cCceEeCCCC---EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC--ccCCeeeeccchhhcccccccchhhhh-
Confidence 7999999999 89999999999999999999999 8889 7 999883 2456889999885433 34566555
Q ss_pred Hhhc---cc---cccccc---ccc----ccccccCceeeeecCccE--EEEeech----hcccc-ccCCCcEE
Q 006782 129 GLKE---GK---AVQVPI---YDF----KSSSRIGYRTLEVPSSRI--VIIEGIY----ALSEK-LRPLIDLR 181 (631)
Q Consensus 129 ~L~~---g~---~I~~Pv---yd~----~~~~rs~~~~~~v~~a~V--LIvEGi~----lL~dE-l~~~lDlk 181 (631)
.... +. ....+. +.. ...+.++++.+++..++. ++.++.+ ++.|| ++..+|..
T Consensus 204 ~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~ 276 (460)
T 2npi_A 204 WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN 276 (460)
T ss_dssp CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS
T ss_pred cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh
Confidence 2111 10 000111 111 034566788889999999 9999999 99999 99999984
No 97
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.77 E-value=1.7e-08 Score=96.75 Aligned_cols=73 Identities=11% Similarity=-0.021 Sum_probs=50.0
Q ss_pred cEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCCCCCe-EEEe
Q 006782 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKII 238 (631)
Q Consensus 160 ~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~~~~fIeP~k~~AD-iII~ 238 (631)
..+|+||..+. ..+.+.+|++|||++|.++++.|+..| .+.+.+++...+..+....+..+ ...|| ++|+
T Consensus 119 ~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~~r----~~~~~~~~~~~~~~R~~~~~~~~----~~~ad~~~Id 189 (208)
T 3ake_A 119 PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRARE----RPQAYEEVLRDLLRRDERDKAQS----APAPDALVLD 189 (208)
T ss_dssp SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHT----SSSCHHHHHHHHHHHHHTC--CC----CCCTTCEEEE
T ss_pred CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHHhh----cccCHHHHHHHHHHHHHHHhhcc----cCCCCEEEEE
Confidence 57899999776 456677899999999999987665544 24677787777754432222222 45677 8887
Q ss_pred CCC
Q 006782 239 NKF 241 (631)
Q Consensus 239 N~~ 241 (631)
|+.
T Consensus 190 ~~~ 192 (208)
T 3ake_A 190 TGG 192 (208)
T ss_dssp TTT
T ss_pred CCC
Confidence 663
No 98
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.75 E-value=3.8e-10 Score=111.52 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=22.5
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHH-HhCC
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL-NFMP 91 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~-~llp 91 (631)
..+++||.+++|+ ++||+||||||||||+++|+ +.+|
T Consensus 16 ~~~~~sl~v~~G~---ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGV---ILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCC---EEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCC---EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3679999999999 99999999999999999999 9874
No 99
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.75 E-value=2.1e-09 Score=102.81 Aligned_cols=161 Identities=17% Similarity=0.181 Sum_probs=87.8
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc-----cccccccCC---CCCCchhhHHHHHHH----hh
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-----RIIDGNFDD---PRLTDYDTLLENIRG----LK 131 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~-----~~i~~vfq~---p~l~d~~tl~e~L~~----L~ 131 (631)
.++.+|+|+|++||||||+++.|+.. +...|..|.+.... ..+.-.|+. ...++...+.+.+.. +.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~--g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~ 83 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW--GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLK 83 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT--TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC--CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHH
Confidence 35679999999999999999999987 45566666542110 011111110 011222222221100 00
Q ss_pred ccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHH
Q 006782 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 211 (631)
Q Consensus 132 ~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi 211 (631)
....+..|.+. ..... . ......+++++|+.+++...+...+|..|||+++.++++.|...| .|.+.+++.
T Consensus 84 ~l~~~~~~~i~---~~~i~-~-~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R----~~~~~~~~~ 154 (203)
T 1uf9_A 84 ALEAVVHPEVR---RLLME-E-LSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMAR----SGLSREEVL 154 (203)
T ss_dssp HHHHHHHHHHH---HHHHH-H-HHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTT----TCCTTHHHH
T ss_pred HHHHHhChHHH---HHHHH-H-hhhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHc----CCCCHHHHH
Confidence 00111223222 00000 0 001225789999988776666677899999999998876655433 267777766
Q ss_pred HHHHhccccchhhcccCCCCCCeEEEeCCC
Q 006782 212 HQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (631)
Q Consensus 212 ~q~~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (631)
..+.. ..+.+ +....||++|.|+.
T Consensus 155 ~~i~~-~~~~~-----~~~~~ad~vId~~~ 178 (203)
T 1uf9_A 155 ARERA-QMPEE-----EKRKRATWVLENTG 178 (203)
T ss_dssp HHHTT-SCCHH-----HHHHHCSEEECCSS
T ss_pred HHHHH-CCChh-----HHHHhCCEEEECCC
Confidence 66643 33332 12356798887653
No 100
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.75 E-value=2.5e-08 Score=97.05 Aligned_cols=80 Identities=16% Similarity=0.110 Sum_probs=58.4
Q ss_pred cEEEEeechhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCC--CHHHHHHHHHhccccchhhcccCCCCCCe-EE
Q 006782 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAH-IK 236 (631)
Q Consensus 160 ~VLIvEGi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~--s~e~Vi~q~~~~v~P~~~~fIeP~k~~AD-iI 236 (631)
..++++|..+ ...+...+|++|||+++.+++..|++.+ ...||. +.+++..++..+..++..+.+.|....|| ++
T Consensus 119 ~~~vi~g~~~-~~~~~~~~~~vi~l~a~~e~~~~R~~~~-~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~ 196 (219)
T 2h92_A 119 KGIVMDGRDI-GTVVLPDADLKVYMIASVEERAERRYKD-NQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVT 196 (219)
T ss_dssp CCEEEEESSC-CCCCCTTCSEEEEEECCHHHHHHHHHHH-HHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEE
T ss_pred CcEEEEcCCc-cceecCCCCEEEEEECCHHHHHHHHHHH-HHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEE
Confidence 3567788633 2345566899999999999987766554 335677 88888888877766777777788877777 88
Q ss_pred EeCCC
Q 006782 237 IINKF 241 (631)
Q Consensus 237 I~N~~ 241 (631)
|+|+.
T Consensus 197 Id~~~ 201 (219)
T 2h92_A 197 LDTTG 201 (219)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 87663
No 101
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.75 E-value=5.3e-09 Score=100.15 Aligned_cols=24 Identities=33% Similarity=0.677 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp 91 (631)
++||+||||||||||+++|+++++
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 799999999999999999999984
No 102
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.73 E-value=5e-10 Score=106.32 Aligned_cols=110 Identities=18% Similarity=0.146 Sum_probs=68.8
Q ss_pred eceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccccccCCCCCC-chhhHHHHHHH----
Q 006782 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLT-DYDTLLENIRG---- 129 (631)
Q Consensus 55 ~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~-d~~tl~e~L~~---- 129 (631)
+|||.+++|+ +++|+||||||||||++++.+ +...+..|. ..+++++++... ......+.+..
T Consensus 1 ~vsl~i~~ge---i~~l~G~nGsGKSTl~~~~~~---~~~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (171)
T 4gp7_A 1 SMKLTIPELS---LVVLIGSSGSGKSTFAKKHFK---PTEVISSDF------CRGLMSDDENDQTVTGAAFDVLHYIVSK 68 (171)
T ss_dssp CEEEEEESSE---EEEEECCTTSCHHHHHHHHSC---GGGEEEHHH------HHHHHCSSTTCGGGHHHHHHHHHHHHHH
T ss_pred CccccCCCCE---EEEEECCCCCCHHHHHHHHcc---CCeEEccHH------HHHHhcCcccchhhHHHHHHHHHHHHHH
Confidence 5899999999 999999999999999998432 222222221 125566665432 11222333222
Q ss_pred -hhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 130 -LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 130 -L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
+..+... ..+ .....++++.+++..++.+..++.+++.||++..+|.
T Consensus 69 ~~~~g~~~---~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~ 116 (171)
T 4gp7_A 69 RLQLGKLT---VVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQE 116 (171)
T ss_dssp HHHTTCCE---EEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHH
T ss_pred HHhCCCeE---EEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHH
Confidence 1112111 111 1223355677788889999999999999999988886
No 103
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.72 E-value=3e-10 Score=112.23 Aligned_cols=117 Identities=13% Similarity=0.087 Sum_probs=70.9
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcc----ccccccccccCCC--CCCch-
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSSRIIDGNFDDP--RLTDY- 120 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~----~~~~~i~~vfq~p--~l~d~- 120 (631)
+...+|++| ++|+ ++||+||||||||||+++|+++-|+.|.|...... ...+.++++||++ ++..+
T Consensus 11 g~~~~l~~i----~~Ge---~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~ 83 (208)
T 3b85_A 11 GQKHYVDAI----DTNT---IVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYL 83 (208)
T ss_dssp HHHHHHHHH----HHCS---EEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTT
T ss_pred hHHHHHHhc----cCCC---EEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHH
Confidence 344577875 7788 89999999999999999999983355665321111 1124689999986 11011
Q ss_pred hhHHHHHHHhhccccccccccccccccccCceeeeecCccEEEEeechhccccccCC
Q 006782 121 DTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (631)
Q Consensus 121 ~tl~e~L~~L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~ 177 (631)
..+.+.+..... ....+..... .-|+.+++..+++++.++.+++.|||+..
T Consensus 84 ~~~~~~~~~~~~-----~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 84 RPLHDALRDMVE-----PEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp HHHHHHHTTTSC-----TTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HHHHHHHHHhcc-----HHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 011111110000 0000000011 11789999999999999999999999987
No 104
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.70 E-value=3.3e-09 Score=105.49 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=84.7
Q ss_pred EeccCCccEEEEEECCCCCcHHHHHHHHHHhCC---CceEEEECCccccc---cccccccCCCCCCchhhHHHHHHHhhc
Q 006782 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMDNYNDSS---RIIDGNFDDPRLTDYDTLLENIRGLKE 132 (631)
Q Consensus 59 ~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp---~~G~I~lDg~~~~~---~~i~~vfq~p~l~d~~tl~e~L~~L~~ 132 (631)
..++|+ +++|+||||||||||+++|.+.+| ..|.|.+.+..... ..++|+||++..|+..++...+.
T Consensus 12 ~~~~G~---ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~---- 84 (219)
T 1s96_A 12 HMAQGT---LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFL---- 84 (219)
T ss_dssp ---CCC---EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE----
T ss_pred cCCCCc---EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHH----
Confidence 456777 999999999999999999999984 46777776643221 35788898776554433310000
Q ss_pred cccccc--cccccccccccCceeeeecCccEEEEeechhccccccCCC--cEEEEEEcChhhHHHHHHHHHHHHhCC-CH
Q 006782 133 GKAVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI--DLRVSVTGGVHFDLVKRVFRDIQRVGQ-EP 207 (631)
Q Consensus 133 g~~I~~--Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l--DlkIfVdad~d~rLiRRI~RDv~erG~-s~ 207 (631)
+.+.. ..|... .... ...+...++++++-.......+...+ ...|++.++.-..+.+|+ ..+|. +.
T Consensus 85 -E~~~~~~~~yg~~-~~~v---~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl----~~rG~~~~ 155 (219)
T 1s96_A 85 -EHAEVFGNYYGTS-REAI---EQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRL----RGRGQDSE 155 (219)
T ss_dssp -EEEEETTEEEEEE-HHHH---HHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHH----HTTSCSCH
T ss_pred -HHHHHHhccCCCC-HHHH---HHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHH----HHcCCCCH
Confidence 00000 011100 0000 01123347888882221112222222 367888776544454543 45664 67
Q ss_pred HHHHHHHHhccccchhhcccCCCCCCeEEEeCC
Q 006782 208 EEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (631)
Q Consensus 208 e~Vi~q~~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (631)
+++..++....... +.....|++|.|+
T Consensus 156 e~i~~rl~~a~~e~------~~~~~~d~~i~Nd 182 (219)
T 1s96_A 156 EVIAKRMAQAVAEM------SHYAEYDYLIVND 182 (219)
T ss_dssp HHHHHHHHHHHHHH------TTGGGSSEEEECS
T ss_pred HHHHHHHHHHHHHH------hhccCCCEEEECc
Confidence 77777764332111 1223458888774
No 105
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Probab=98.67 E-value=2.3e-07 Score=91.10 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=96.3
Q ss_pred cceeeeecCCCCCCchhccceeeeeecCCEEEEEEeeeecCCCeeecceeEeeeeh---------------hhHHHHhhc
Q 006782 278 EETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSV---------------RLLGGLMAL 342 (631)
Q Consensus 278 ~~f~DIYl~pP~~d~~~tde~LRvR~~dg~~~LtykG~~~d~p~isrp~~ef~V~v---------------~il~GL~~L 342 (631)
..+.++||..|..++...+-+||+|..|+.+.+|+|+|..++ +++.+..++. .+...|..+
T Consensus 34 ~~~~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~TlK~~~~~g----~~E~~~~l~~~ea~~~l~~~~~p~~~i~~~l~~~ 109 (195)
T 3tj7_A 34 TKQVNHYFETPNSSLKEAGSALRIRHKGETYTLTLKQPAEVG----LLETHQVVTENEAKMMMETNVIISGAVMNQLCKL 109 (195)
T ss_dssp EEEEEEEEECTTCHHHHTTCEEEEEEETTEEEEEEEEECSSS----EEEEEEEECHHHHHHHHHSSCCCSSHHHHHHHHH
T ss_pred EEEEEEEEeCCcHhHHhCCCEEEEEeECCeEEEEEeeCCCCC----ceEEEeeCCHHHHHHHhhcCCCChHHHHHHHHHc
Confidence 345589999999999999999999999999999999997663 5666666652 466778999
Q ss_pred CCeE-----EEEEEeeeeEeecCcEEEEeecccccCcc-e-EEEEec----cHHHHHHHHHHcCCCCCc
Q 006782 343 GYTI-----ATILKRSSHIFYDDRVCVKTDWLEQLNRK-Y-VQVQGR----DRLYVKYVGEQLGLDGSY 400 (631)
Q Consensus 343 Gy~~-----~a~v~k~re~y~~~~~~i~lD~ve~Lg~~-F-veI~g~----~~~~v~~~~~~Lgl~g~~ 400 (631)
||.. ++.+.+.|..|...+.+++||+++++|.. | +|++.. .++.+.++.+++||...+
T Consensus 110 g~~~~~l~~~g~l~t~R~e~~~~~g~l~LD~~~y~~~~dyElE~E~~d~~~~~~~~~~lL~~~gi~~~~ 178 (195)
T 3tj7_A 110 QIPVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLKQHNIPIRH 178 (195)
T ss_dssp TCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCccceEEEEEEEEEEEEEEecCCEEEEEEecCCCcEEEEEEEEeCCHHHHHHHHHHHHHHCCCCcCC
Confidence 9765 58898888888777779999999999933 5 555432 677899999999999765
No 106
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.67 E-value=2.5e-09 Score=111.81 Aligned_cols=106 Identities=11% Similarity=0.105 Sum_probs=71.9
Q ss_pred eeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccccccCCCCCCch-
Q 006782 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDY- 120 (631)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~d~- 120 (631)
++++.++ ..+|++++|.+++|+ +++|+||||||||||+++|++++ .|.|.... +|.+.+|..
T Consensus 106 ~vs~~y~-~~vL~~vsl~i~~Ge---~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v-----------~q~~~lf~~t 168 (305)
T 2v9p_A 106 NIELITF-INALKLWLKGIPKKN---CLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFA-----------NHKSHFWLAS 168 (305)
T ss_dssp TCCHHHH-HHHHHHHHHTCTTCS---EEEEECSSSSSHHHHHHHHHHHH--TCEEECGG-----------GTTSGGGGGG
T ss_pred EEEEEcC-hhhhccceEEecCCC---EEEEECCCCCcHHHHHHHHhhhc--CceEEEEe-----------cCcccccccc
Confidence 3444444 468999999999999 89999999999999999999998 67775432 222222211
Q ss_pred -------------hhHHHHHHH-hhccccccccccccccccccCceeeeecCccEEEEeechhccccccCCCcE
Q 006782 121 -------------DTLLENIRG-LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (631)
Q Consensus 121 -------------~tl~e~L~~-L~~g~~I~~Pvyd~~~~~rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~lDl 180 (631)
..+.+.+.. +.. .++ ....++|++++ +++++.++.+++ +..+|.
T Consensus 169 i~~~ni~~~~~~~~~~~~~i~~~L~~-------gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 169 LADTRAALVDDATHACWRYFDTYLRN-------ALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp GTTCSCEEEEEECHHHHHHHHHTTTG-------GGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred HHHHhhccCccccHHHHHHHHHHhHc-------cCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 123333333 211 122 34677788887 888888888887 677775
No 107
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.67 E-value=1.3e-08 Score=98.46 Aligned_cols=63 Identities=19% Similarity=0.070 Sum_probs=41.6
Q ss_pred EeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc------cccccccCCCCCCchhhHHHHH
Q 006782 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENI 127 (631)
Q Consensus 59 ~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~------~~i~~vfq~p~l~d~~tl~e~L 127 (631)
...+|+ +|+|+|+|||||||++++|++.+ |.+.+|+..... ...++.||++..+...++.+++
T Consensus 25 ~~~~g~---~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 25 TGEPTR---HVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp ---CCC---EEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCc---EEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 334555 89999999999999999999986 566666653321 2356777765554444444443
No 108
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.62 E-value=7.6e-09 Score=95.36 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=79.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccccccCCCCCCchhhHHHHHHHhhccccccccccccccc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~~ 146 (631)
.+|+|.|++||||||+++.| ..+ +...+.+|+.......... ....+.....+.+... .+..+.... ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~-g~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~----~~ 70 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER-GAKVIVMSDVVRKRYSIEA----KPGERLMDFAKRLREI-YGDGVVARL----CV 70 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT-TCEEEEHHHHHHHHHHHHC-------CCHHHHHHHHHHH-HCTTHHHHH----HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC-CCcEEEHhHHHHHHHHhcC----CChhHHHHHHHHHHhh-CCHHHHHHH----HH
Confidence 37999999999999999999 655 4445665543221100000 0001111111111110 011110000 00
Q ss_pred cccCceeeeecCccEEEEeechhcc--ccccC---CCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHHHhccccc
Q 006782 147 SRIGYRTLEVPSSRIVIIEGIYALS--EKLRP---LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPM 221 (631)
Q Consensus 147 ~rs~~~~~~v~~a~VLIvEGi~lL~--dEl~~---~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~~~~v~P~ 221 (631)
. .........+|++|..... +.+.. .-+..||+++|.++++.|...|+....+.+.+++.+++.....
T Consensus 71 ~-----~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~-- 143 (179)
T 3lw7_A 71 E-----ELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELK-- 143 (179)
T ss_dssp H-----HHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHH--
T ss_pred H-----HHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhc--
Confidence 0 0001334678899972211 12222 3458999999999877666555443345688888877743211
Q ss_pred hhhcccCCCCCCeEEEeCCCCC
Q 006782 222 YKAFIEPDLQTAHIKIINKFNP 243 (631)
Q Consensus 222 ~~~fIeP~k~~ADiII~N~~~p 243 (631)
..+.+....||++|.|+.++
T Consensus 144 --~~~~~~~~~ad~vId~~~~~ 163 (179)
T 3lw7_A 144 --LGIGEVIAMADYIITNDSNY 163 (179)
T ss_dssp --HTHHHHHHTCSEEEECCSCH
T ss_pred --cChHhHHHhCCEEEECCCCH
Confidence 11334456789999876533
No 109
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.59 E-value=4.2e-08 Score=94.50 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=27.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
+.+|+|+|++||||||+++.|++.+ +...|..|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l-g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC-GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH-TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCEEEeCCcC
Confidence 3489999999999999999999987 3345555544
No 110
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.58 E-value=1.2e-08 Score=120.60 Aligned_cols=66 Identities=8% Similarity=0.038 Sum_probs=47.7
Q ss_pred ccccccccCceeeeecCccEEEEee---chhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 006782 142 DFKSSSRIGYRTLEVPSSRIVIIEG---IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (631)
Q Consensus 142 d~~~~~rs~~~~~~v~~a~VLIvEG---i~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~q~ 214 (631)
+....+.++|+.+++..++.++-++ .++++|||+..+|+ .+.+.+..+.+.+.+.|.|+--|.|..
T Consensus 800 gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~-------~~~~~L~~lL~~L~~~G~TVIvI~HdL 868 (916)
T 3pih_A 800 GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHF-------EDVRKLVEVLHRLVDRGNTVIVIEHNL 868 (916)
T ss_dssp TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCH-------HHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3445678899999999999888654 58888999999998 455566666666666677654444433
No 111
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.58 E-value=7.3e-09 Score=121.36 Aligned_cols=59 Identities=7% Similarity=0.053 Sum_probs=44.5
Q ss_pred ccccccccCceeeeecCccEEEEe---echhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCH
Q 006782 142 DFKSSSRIGYRTLEVPSSRIVIIE---GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (631)
Q Consensus 142 d~~~~~rs~~~~~~v~~a~VLIvE---Gi~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~ 207 (631)
+......++|+.+++..++.++.+ +.++++|||+..+|+ .+...+..+.+++.+.|.++
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~-------~~~~~l~~lL~~L~~~G~tV 786 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHP-------ADVERLQRQLVKLVDAGNTV 786 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCH-------HHHHHHHHHHHHHHHTTCEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 444567888999999999998886 588888999999998 34555566666665566654
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=7.8e-09 Score=99.89 Aligned_cols=51 Identities=20% Similarity=0.248 Sum_probs=29.7
Q ss_pred cCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 47 ~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.+...++++|+|.+.++. +|+|+|++||||||+++.|++.+ +...+..|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~---~i~l~G~~GsGKsTl~~~La~~l-~~~~i~~d~~ 59 (199)
T 3vaa_A 9 SGVDLGTENLYFQSNAMV---RIFLTGYMGAGKTTLGKAFARKL-NVPFIDLDWY 59 (199)
T ss_dssp ---------------CCC---EEEEECCTTSCHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred CCCCCCCCceeEecCCCC---EEEEEcCCCCCHHHHHHHHHHHc-CCCEEcchHH
Confidence 345567999999998887 89999999999999999999987 3445655554
No 113
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.55 E-value=6.4e-10 Score=120.80 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=49.1
Q ss_pred eEEeeceeEeccCC-----------------ccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccccccccccc
Q 006782 51 IVIRACQLLAQKNH-----------------GIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNF 112 (631)
Q Consensus 51 ~vL~~Isl~i~~ge-----------------kp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~~~i~~vf 112 (631)
.++++|+|.+++|+ ...++||+|+||||||||+++|.|+. |+.|.|.+++..... .+++|
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~--~~~v~ 114 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM--ERHPY 114 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C--CCEEE
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce--eEEec
Confidence 46999999999998 55689999999999999999999998 788888888754321 14555
Q ss_pred CCC
Q 006782 113 DDP 115 (631)
Q Consensus 113 q~p 115 (631)
|++
T Consensus 115 q~~ 117 (413)
T 1tq4_A 115 KHP 117 (413)
T ss_dssp ECS
T ss_pred ccc
Confidence 543
No 114
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.51 E-value=4.4e-08 Score=102.03 Aligned_cols=74 Identities=15% Similarity=0.072 Sum_probs=59.9
Q ss_pred eeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------------cccccccCCCC-CC
Q 006782 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------------RIIDGNFDDPR-LT 118 (631)
Q Consensus 54 ~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------------~~i~~vfq~p~-l~ 118 (631)
..++|.+.+|+ +++|+|||||||||++++|++.+ |..|.|.+++.+... ..+++++|++. ++
T Consensus 91 ~~l~~~~~~g~---vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 91 TELQLGFRKPA---VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CSCCCCSSSCE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred cccccccCCCc---EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 56788888777 99999999999999999999999 788999888754321 24788999988 88
Q ss_pred chhhHHHHHHHh
Q 006782 119 DYDTLLENIRGL 130 (631)
Q Consensus 119 d~~tl~e~L~~L 130 (631)
+..++.+++...
T Consensus 168 ~~~~v~e~l~~~ 179 (302)
T 3b9q_A 168 AATVLSKAVKRG 179 (302)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888999998753
No 115
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.49 E-value=3.1e-08 Score=116.94 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=46.3
Q ss_pred ccccccccCceeeeecCccEEEEee---chhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHH
Q 006782 142 DFKSSSRIGYRTLEVPSSRIVIIEG---IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (631)
Q Consensus 142 d~~~~~rs~~~~~~v~~a~VLIvEG---i~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~ 212 (631)
+......++|+.+++..++.++.++ .++++|||+..+|+ .+...+..+.+++.+.|.++--+.|
T Consensus 840 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~-------~~~~~l~~lL~~L~~~G~TVIvisH 906 (972)
T 2r6f_A 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHV-------DDIARLLDVLHRLVDNGDTVLVIEH 906 (972)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCH-------HHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 4445678889999999999988764 78888999999998 3455556666666666765443333
No 116
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.46 E-value=3.6e-08 Score=116.75 Aligned_cols=64 Identities=9% Similarity=0.019 Sum_probs=45.6
Q ss_pred ccccccccCceeeeecCccEEEEee---chhccccccCCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHHH
Q 006782 142 DFKSSSRIGYRTLEVPSSRIVIIEG---IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (631)
Q Consensus 142 d~~~~~rs~~~~~~v~~a~VLIvEG---i~lL~dEl~~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi~ 212 (631)
+......++|+.+++..++.++.++ .++++|||+..+|+ .+...+..+.+.+.+.|.++--+.|
T Consensus 858 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~-------~~~~~l~~lL~~L~~~G~TVIvisH 924 (993)
T 2ygr_A 858 GQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHF-------DDIRKLLNVINGLVDKGNTVIVIEH 924 (993)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCH-------HHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 4445678889999999999988764 78888999999998 3445555666666555665433333
No 117
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.45 E-value=2.6e-08 Score=96.92 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=41.8
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc----cc---cccccccccCCCCCCch
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY----ND---SSRIIDGNFDDPRLTDY 120 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~----~~---~~~~i~~vfq~p~l~d~ 120 (631)
+...++++ ..+++|+ ++||+||||||||||+++|+++++. +.+++. .. ..+.++++||++..|+.
T Consensus 7 ~~~~~~~~--~~i~~Ge---i~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 78 (207)
T 1znw_A 7 DTKPTARG--QPAAVGR---VVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQ 78 (207)
T ss_dssp --------------CCC---EEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHH
T ss_pred CCCcCCCC--CCCCCCC---EEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHH
Confidence 34557788 5888999 9999999999999999999999852 222221 11 12457889998776655
Q ss_pred hhHHHH
Q 006782 121 DTLLEN 126 (631)
Q Consensus 121 ~tl~e~ 126 (631)
.++.++
T Consensus 79 ~~~~~~ 84 (207)
T 1znw_A 79 LIDQGE 84 (207)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 544433
No 118
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.44 E-value=3.2e-07 Score=86.08 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=26.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.+|+|+|++||||||+++.|++.+ |.+.+|+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d 40 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGD 40 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCc
Confidence 489999999999999999999976 44555543
No 119
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.43 E-value=5.1e-08 Score=106.57 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=63.6
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCc---ccc------------cccccccc
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY---NDS------------SRIIDGNF 112 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~---~~~------------~~~i~~vf 112 (631)
...+|+++ |.+.+|+ ++||+||||||||||+++|+++. |+.|.|.++|. ... .+.+++++
T Consensus 144 g~~vld~v-l~i~~Gq---~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQ---RMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTC---EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCC---EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 35689999 9999999 89999999999999999999999 89999999986 211 13467888
Q ss_pred CC-CCCCchhhHHHHHHHh
Q 006782 113 DD-PRLTDYDTLLENIRGL 130 (631)
Q Consensus 113 q~-p~l~d~~tl~e~L~~L 130 (631)
|+ ..++...++.+++...
T Consensus 220 q~~~~~~~~~~v~~~~~~~ 238 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRI 238 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 84 4556777888877653
No 120
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.40 E-value=1.3e-07 Score=100.91 Aligned_cols=74 Identities=15% Similarity=0.072 Sum_probs=61.2
Q ss_pred eeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-------------cccccccCCCC-CC
Q 006782 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------------RIIDGNFDDPR-LT 118 (631)
Q Consensus 54 ~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-------------~~i~~vfq~p~-l~ 118 (631)
..++|.+++|+ +|+|+|||||||||++++|++++ |..|.|.+++.+... ..+++++|++. ++
T Consensus 148 ~~l~l~~~~g~---vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPA---VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCe---EEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46788887777 99999999999999999999999 788999888754321 24788999988 88
Q ss_pred chhhHHHHHHHh
Q 006782 119 DYDTLLENIRGL 130 (631)
Q Consensus 119 d~~tl~e~L~~L 130 (631)
+..++.+++...
T Consensus 225 p~~tv~e~l~~~ 236 (359)
T 2og2_A 225 AATVLSKAVKRG 236 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 888999998754
No 121
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.39 E-value=1.4e-07 Score=104.51 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=62.0
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------------ccccccccCCCCCC
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------SRIIDGNFDDPRLT 118 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------------~~~i~~vfq~p~l~ 118 (631)
.++++|.+.+|+ +|+|+|+||||||||+++|++++ +..|.|.+++.+.. .+.+++++|++.++
T Consensus 283 ~~~Isl~i~~Ge---VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPF---VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCe---EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 468899888887 99999999999999999999998 77888888653221 13478899998888
Q ss_pred chhhHHHHHHHhh
Q 006782 119 DYDTLLENIRGLK 131 (631)
Q Consensus 119 d~~tl~e~L~~L~ 131 (631)
+..++.+++....
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8889999987653
No 122
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.39 E-value=1.4e-07 Score=89.83 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=22.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp 91 (631)
+++|+||||||||||+++|.+.++
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 899999999999999999999884
No 123
>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}
Probab=98.39 E-value=1.6e-06 Score=85.31 Aligned_cols=124 Identities=11% Similarity=0.005 Sum_probs=93.6
Q ss_pred ccceeeeecCCCCCCchhccceeeeeecCC-----------EEEEEEeeeecCCCee-ecceeEeeeehhh---------
Q 006782 277 TEETYDIYLLPPGEDPDACQSYLRMRNRDG-----------KYNLMFEEWVTDSPFI-ISPRITFEVSVRL--------- 335 (631)
Q Consensus 277 ~~~f~DIYl~pP~~d~~~tde~LRvR~~dg-----------~~~LtykG~~~d~p~i-srp~~ef~V~v~i--------- 335 (631)
...+.|+||..|..++...+.|||+|..++ +..+|||+|....... .+++.+..++...
T Consensus 29 ~~~~~~~y~dt~~~~l~~~~~~lr~R~~~~~~e~~~~~~~~~~~~TlK~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 108 (210)
T 3v85_A 29 TLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPA 108 (210)
T ss_dssp EEEEEEEEEECTTCHHHHTTEEEEEEEEEC------CCCCCEEEEEEEEEEEEETTEEEEEEEEEEECHHHHHHHHHCGG
T ss_pred eEEEEEEEEeCCCHHHHhCCcEEEEEEeCCccceeccCCCcceEEEEecCCcCCCCceeEEEEeecCChhHHHHhhhhhh
Confidence 344569999999999999999999998654 5679999988766543 3444444443221
Q ss_pred ----------HH------HHhhcCCeEEEEEEeeeeEeecCcEEEEeecccccCcceEEEEec------cHHHHHHHHHH
Q 006782 336 ----------LG------GLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR------DRLYVKYVGEQ 393 (631)
Q Consensus 336 ----------l~------GL~~LGy~~~a~v~k~re~y~~~~~~i~lD~ve~Lg~~FveI~g~------~~~~v~~~~~~ 393 (631)
.. .+..+|+++.+.+.+.|..|..++..|++|..+..+-+|+||+-. ..+.+.+++++
T Consensus 109 ~~~~~~~~~i~~~~~~~~i~~~~~l~~~~~~~t~R~e~~~~~~~l~LD~~~~~~g~~~ELEle~~d~e~~~~~~~~lL~~ 188 (210)
T 3v85_A 109 KLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKTMIEEFLTE 188 (210)
T ss_dssp GGGGCCCHHHHHHHHHHTCSCSTTCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHhhccccccceEEEEEEEEEEEEEEeCCEEEEEeeeeeCCcEEEEEEEEeCCHHHHHHHHHHHHHH
Confidence 11 124689999999999999999999999999999664389888533 46678888999
Q ss_pred cCCCCCc
Q 006782 394 LGLDGSY 400 (631)
Q Consensus 394 Lgl~g~~ 400 (631)
+||.-.+
T Consensus 189 ~gI~~~~ 195 (210)
T 3v85_A 189 EKIEFSN 195 (210)
T ss_dssp TTCCEEE
T ss_pred cCCCcCc
Confidence 9997433
No 124
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.39 E-value=7.2e-08 Score=102.59 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=56.0
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccc-----ccccccccc-CCCCC--CchhhH
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSRIIDGNF-DDPRL--TDYDTL 123 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~-----~~~~i~~vf-q~p~l--~d~~tl 123 (631)
+++++|.+++|+ +++|+||||||||||+++|.+++ |+.|.|.++|... ....+++++ |++.. ++..++
T Consensus 165 ~~~l~~~i~~G~---~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~ 241 (361)
T 2gza_A 165 MSFLRRAVQLER---VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTA 241 (361)
T ss_dssp HHHHHHHHHTTC---CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCH
T ss_pred HHHHHHHHhcCC---EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCH
Confidence 389999999999 89999999999999999999999 7899999997532 123467788 66543 355678
Q ss_pred HHHHHHh
Q 006782 124 LENIRGL 130 (631)
Q Consensus 124 ~e~L~~L 130 (631)
.++|...
T Consensus 242 ~~~i~~~ 248 (361)
T 2gza_A 242 ATLLRSC 248 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888754
No 125
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.38 E-value=2.7e-08 Score=101.01 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=35.7
Q ss_pred CceeEEeeceeEecc---CCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 48 GFFIVIRACQLLAQK---NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 48 g~~~vL~~Isl~i~~---gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+...+|++++|.+.+ |+ +|+|+|++||||||+++.|++.+
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~---~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGR---SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTC---CEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCC---EEEEECCCCCCHHHHHHHHHHhc
Confidence 556789999999999 88 79999999999999999999976
No 126
>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}
Probab=98.38 E-value=7.1e-06 Score=79.96 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=97.6
Q ss_pred eeeeecCCCCCCchhccceeeeeecCCEEEEEEeeeecCCCeeecceeEeeeeh---------------hhHHHHhhcCC
Q 006782 280 TYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSV---------------RLLGGLMALGY 344 (631)
Q Consensus 280 f~DIYl~pP~~d~~~tde~LRvR~~dg~~~LtykG~~~d~p~isrp~~ef~V~v---------------~il~GL~~LGy 344 (631)
+.++||..|..++...+.+||+|..|+.+.+|+|+|... .+++.+..|+. .+...|.++|+
T Consensus 36 ~~n~YfDTpd~~L~~~~~aLRiR~~~~~~~~TlK~~~~~----gR~E~e~~l~~~~~~~~l~~~~~p~~~~~~~l~~~~~ 111 (193)
T 2gfg_A 36 QRNHYFETDDFQLKKQSSALRIREKEAIFTFTLKQPHPA----GLLETNQTLSKQEAKLALESAHFPSGEVMDALRDLSI 111 (193)
T ss_dssp EEEEEEECTTCHHHHTTCEEEEEEETTEEEEEEEEECSS----SEEEEEEEECHHHHHHHHHHCCCCCSHHHHHHHHTTC
T ss_pred eEEEeeeCCCHHHHhCCCEEEEEeeCCcEEEEEccCCCC----CCceEeccCCchhhhhhcccccCCcHHHHHHHHHhcC
Confidence 558999999999999999999999999999999998764 37777777762 34555677776
Q ss_pred e-----EEEEEEeeeeEeecCcEEEEeecccccCcceEEEEe--c----cHHHHHHHHHHcCCCCCccchhhHHHH
Q 006782 345 T-----IATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQG--R----DRLYVKYVGEQLGLDGSYVPRTYIEQI 409 (631)
Q Consensus 345 ~-----~~a~v~k~re~y~~~~~~i~lD~ve~Lg~~FveI~g--~----~~~~v~~~~~~Lgl~g~~i~kSYLEli 409 (631)
. +++.+.+.|..|..++-.|++|.++.+|.++.||+- . ..+.+.+++.++|+...+- .|=++-.
T Consensus 112 ~~~~L~~~~~~~~~R~~~~~~~gev~lD~~~~~~~~~~ElE~El~~~~~~~~~~~~~l~~~gi~~~~~-~SK~~R~ 186 (193)
T 2gfg_A 112 PISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQVPT-ENKIQRF 186 (193)
T ss_dssp CGGGCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHHHHTTCCCCCC-CCHHHHH
T ss_pred CccceEEEEEEEEEEEEEEeCCcEEEEeccEecCCeeEEEEEEECCcHHHHHHHHHHHHHCCCCcCCC-cCHHHHH
Confidence 5 478899999888888779999999999966777742 2 2357788889999975433 5555443
No 127
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.37 E-value=1.3e-08 Score=107.09 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=44.6
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcc
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~ 102 (631)
++++++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|..
T Consensus 160 ~l~~l~~~i~~g~---~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 160 AISAIKDGIAIGK---NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHTC---CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred HHhhhhhhccCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence 6889999999999 89999999999999999999999 889999999853
No 128
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.36 E-value=5.5e-07 Score=87.16 Aligned_cols=24 Identities=46% Similarity=0.713 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp 91 (631)
+|+|+|||||||||+++.|+..++
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCc
Confidence 899999999999999999999874
No 129
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.35 E-value=6.1e-08 Score=103.58 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=32.9
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.++++++|.+.+| +++|+|+||||||||+++|..++
T Consensus 48 f~~l~~v~l~~~~G----~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 48 LATITQLELELGGG----FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp ETTEEEEEEECCSS----EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ccceeeEEEecCCC----cEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999876 49999999999999999998776
No 130
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.31 E-value=1.9e-07 Score=105.93 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=46.7
Q ss_pred EEEECCCCCcHHHHHHHHHHhC-C-CceEEEECCccc----------cccccccccCCCCCCchhhHHHHHHHh
Q 006782 69 VGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYND----------SSRIIDGNFDDPRLTDYDTLLENIRGL 130 (631)
Q Consensus 69 IGI~GpsGSGKSTLlr~L~~ll-p-~~G~I~lDg~~~----------~~~~i~~vfq~p~l~d~~tl~e~L~~L 130 (631)
|||+|+||||||||+++|+|++ | +.|.|.++|... ....++++||++.+++..++.+++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA 121 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHH
Confidence 9999999999999999999998 8 799999988642 124578999999999999999998764
No 131
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.31 E-value=5.3e-07 Score=94.00 Aligned_cols=65 Identities=14% Similarity=0.025 Sum_probs=54.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-------------ccccccccCCCCCCchhhHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------SRIIDGNFDDPRLTDYDTLLENIRGL 130 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-------------~~~i~~vfq~p~l~d~~tl~e~L~~L 130 (631)
+.+|+|+|||||||||++++|++++ |..|.|.+++.+.. ...++++||++.+++..++.+++...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3499999999999999999999999 88899999886432 12478899999998888899988653
No 132
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.27 E-value=2.4e-07 Score=87.39 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=28.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
+.+|+|.|++||||||+++.|+..+ +...|..|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~ 37 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY-GYTHLSAGEL 37 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHH
Confidence 5689999999999999999999876 3345555544
No 133
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.23 E-value=3.6e-07 Score=101.02 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=45.5
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccc
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~ 103 (631)
..+|++++|.+++ + ++||+||||||||||+++|++++ |+.|.|.++|...
T Consensus 17 ~~~l~~vsl~i~~-e---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-L---VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-S---EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-c---eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 3469999999998 7 99999999999999999999998 8999999998754
No 134
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.21 E-value=2.1e-07 Score=91.40 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=32.4
Q ss_pred EeccCCccEEEEEECCCCCcHHHHHHHHH--HhC-CCceEEEECCc
Q 006782 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVL--NFM-PSIAVITMDNY 101 (631)
Q Consensus 59 ~i~~gekp~IIGI~GpsGSGKSTLlr~L~--~ll-p~~G~I~lDg~ 101 (631)
.+++|+ +++|+||||||||||+++|+ +.+ ++.+.+.+++.
T Consensus 26 gi~~G~---~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 26 GFPEGT---TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTC---EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCc---EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 577888 99999999999999999999 663 55566666554
No 135
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.20 E-value=9.5e-08 Score=100.79 Aligned_cols=72 Identities=14% Similarity=0.083 Sum_probs=57.2
Q ss_pred eecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcccc-----------cccccccc
Q 006782 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNF 112 (631)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~-----------~~~i~~vf 112 (631)
+.++...++++++|.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.+.+.+.. ...+++++
T Consensus 37 ~~~~~~~~l~~i~~~~~~g~---~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~ 113 (337)
T 2qm8_A 37 HRAAVRDLIDAVLPQTGRAI---RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLA 113 (337)
T ss_dssp HHHHHHHHHHHHGGGCCCSE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGG
T ss_pred cccChHHHHHhCCcccCCCe---EEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeec
Confidence 34444568999999998888 99999999999999999999998 77788877765331 13467888
Q ss_pred CCCCCCc
Q 006782 113 DDPRLTD 119 (631)
Q Consensus 113 q~p~l~d 119 (631)
|++.+|.
T Consensus 114 q~~~~~~ 120 (337)
T 2qm8_A 114 IDRNAFI 120 (337)
T ss_dssp GCTTEEE
T ss_pred cCccccc
Confidence 8887764
No 136
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.18 E-value=1e-06 Score=83.46 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=44.4
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc-----cccccccCCCCCCchhhHHHHHHH
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-----RIIDGNFDDPRLTDYDTLLENIRG 129 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~-----~~i~~vfq~p~l~d~~tl~e~L~~ 129 (631)
+++|+ +|+|+|||||||||++++|++. ++.|.|.+++..... ..+++++|.+. ...++.+++..
T Consensus 6 i~~g~---~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~ 74 (191)
T 1zp6_A 6 DLGGN---ILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAAD 74 (191)
T ss_dssp CCTTE---EEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHH
T ss_pred CCCCe---EEEEECCCCCCHHHHHHHHHhc-cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHH
Confidence 44555 8999999999999999999998 578889988754211 12355555432 24456666643
No 137
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.16 E-value=3.7e-07 Score=86.91 Aligned_cols=61 Identities=13% Similarity=0.237 Sum_probs=37.3
Q ss_pred CCCcEEEEEEcChhhHHHHHHHHHHHHhCCCHHHHH-HHHHhccccchhhcccCCC-CCCeEEEeCCC
Q 006782 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII-HQISETVYPMYKAFIEPDL-QTAHIKIINKF 241 (631)
Q Consensus 176 ~~lDlkIfVdad~d~rLiRRI~RDv~erG~s~e~Vi-~q~~~~v~P~~~~fIeP~k-~~ADiII~N~~ 241 (631)
...|..|||++|.++.+.| +. .||+..+... ..+.+.+...|..+.++.. ..+|++|+++.
T Consensus 123 ~~~d~vi~L~~~~e~~~~R-l~----~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~ 185 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISR-IK----KRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL 185 (205)
T ss_dssp CCCSEEEEEECCHHHHHHH-HH----HHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS
T ss_pred CCCCEEEEEeCCHHHHHHH-HH----HcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC
Confidence 4679999999998886544 32 2465544321 1333444555555555544 67899997664
No 138
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.16 E-value=4.9e-06 Score=79.24 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=31.3
Q ss_pred eceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 55 ~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.+++...++. +|+|+|++||||||+++.|+..+.+...|..|..
T Consensus 2 ~~~~~~~~~~---~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~ 45 (184)
T 1y63_A 2 PGSMEQPKGI---NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL 45 (184)
T ss_dssp ----CCCSSC---EEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHH
T ss_pred CcCcCCCCCC---EEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHH
Confidence 4566665555 8999999999999999999998324556666654
No 139
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.15 E-value=9.4e-08 Score=91.86 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=60.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcc-------ccccccccccCCCCCCchhhHHHHHHHhhccccccccc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN-------DSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 140 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~-------~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pv 140 (631)
.++|+||||||||||+++|++.++ |.++|+. ...+.+++++|++..... + +........+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~------~--~~~~~~~~~~~ 69 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKK------I--FSSKFFTSKKL 69 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEETTCCEE------E--EEETTCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecCcHHHH------H--HHhhcCCcccc
Confidence 589999999999999999999972 2333332 112456777776521111 0 00000000011
Q ss_pred cccccccccCceeeeecCccE-----EEEeechhcccc--ccCCCcE
Q 006782 141 YDFKSSSRIGYRTLEVPSSRI-----VIIEGIYALSEK--LRPLIDL 180 (631)
Q Consensus 141 yd~~~~~rs~~~~~~v~~a~V-----LIvEGi~lL~dE--l~~~lDl 180 (631)
.+......++++.+++..+++ ++.++.+++.|| +++.+|.
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~ 116 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSK 116 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCH
Confidence 222233456677777777775 778888888899 8888885
No 140
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.13 E-value=1.9e-06 Score=79.65 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=26.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.+|+|+|++||||||+++.|+..+ +...+..|.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d~~ 35 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL-KYPIIKGSSF 35 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH-CCCEEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCeeecCccc
Confidence 379999999999999999999886 3334555543
No 141
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.12 E-value=7.7e-07 Score=94.42 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=50.1
Q ss_pred ceeeeeccceeEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCc
Q 006782 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (631)
Q Consensus 33 ~~ei~~v~~~ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~ 101 (631)
+++...+.+.| .. ...+++++ |.+.+|+ ++||+||||||||||+++|++.. |+.|.|.+.|.
T Consensus 45 ~i~~~~l~~~~--~t-g~~ald~l-l~i~~Gq---~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 45 PLLRQVIDQPF--IL-GVRAIDGL-LTCGIGQ---RIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE 107 (347)
T ss_dssp STTCCCCCSEE--CC-SCHHHHHH-SCEETTC---EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred Ceeecccceec--CC-CCEEEEee-eeecCCC---EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence 34444554444 21 35689999 9999999 89999999999999999999999 88998888764
No 142
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.11 E-value=1.9e-06 Score=81.00 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=27.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
+.+|+|.|++||||||+++.|+..+ +...|..|.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d~ 39 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF-GWVHLSAGD 39 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH-CCEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-CCeEeeHHH
Confidence 4689999999999999999999876 334555554
No 143
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.11 E-value=1.7e-06 Score=91.06 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=53.6
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCccccc-----------cc--cccccCCCCCCchhhHHHHHHH
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-----------RI--IDGNFDDPRLTDYDTLLENIRG 129 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~~~~-----------~~--i~~vfq~p~l~d~~tl~e~L~~ 129 (631)
.++.+++|+|||||||||++++|++.+ |..|.|.+++.+... +. +.+++|.+.+++..++.+++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 345599999999999999999999999 788888888764321 22 3378888888888999999875
Q ss_pred h
Q 006782 130 L 130 (631)
Q Consensus 130 L 130 (631)
.
T Consensus 207 ~ 207 (328)
T 3e70_C 207 A 207 (328)
T ss_dssp H
T ss_pred H
Confidence 4
No 144
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.09 E-value=1.9e-07 Score=96.89 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=21.3
Q ss_pred eEeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh-C-CCceEEEECCc
Q 006782 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF-M-PSIAVITMDNY 101 (631)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l-l-p~~G~I~lDg~ 101 (631)
+++.++...++++++|.+ +|+|+||+|||||++.|.+. + |..| +.++|.
T Consensus 4 l~~~~~~~~~l~~~~~~I---------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~ 54 (301)
T 2qnr_A 4 LPNQVHRKSVKKGFEFTL---------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAE 54 (301)
T ss_dssp --------------CEEE---------EEEEETTSSHHHHHHHHHC---------------
T ss_pred CcceECCEEEEcCCCEEE---------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCc
Confidence 344556677899998855 99999999999999999886 5 7777 665554
No 145
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.08 E-value=4.2e-07 Score=101.05 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=53.9
Q ss_pred CceeEEeecee-EeccCCccEEEEEECCCCCcHHHHHHH--HHHhC-CCceEEEECCcccc------ccccccccCCCC
Q 006782 48 GFFIVIRACQL-LAQKNHGIILVGVAGPSGAGKTVFTEK--VLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPR 116 (631)
Q Consensus 48 g~~~vL~~Isl-~i~~gekp~IIGI~GpsGSGKSTLlr~--L~~ll-p~~G~I~lDg~~~~------~~~i~~vfq~p~ 116 (631)
+...+|++|+| .+++|+ +++|+||||||||||+++ +++++ |+.|.|.+++.... .+.++++||++.
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge---~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGR---STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp CCCTTHHHHTTSSEETTS---EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHH
T ss_pred CCchhHHHhcCCCCCCCe---EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhh
Confidence 34567999999 999999 999999999999999999 67888 68899999986421 135677777643
No 146
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.06 E-value=2.3e-05 Score=75.06 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=29.6
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.++.+|+|.|++||||||+++.|+..+ +...|+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~-g~~~i~~d~~ 49 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDL 49 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS-SCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc-CceEEeHHHH
Confidence 446789999999999999999999887 4455666543
No 147
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.06 E-value=1.3e-06 Score=85.04 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp 91 (631)
+|+|+|||||||||+++.|++.++
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 899999999999999999999984
No 148
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.06 E-value=6.4e-07 Score=91.23 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=41.2
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CC-ceEEEECCcc
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNYN 102 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~-~G~I~lDg~~ 102 (631)
.+|++++ +++|+ +++|+||||||||||+++|++++ |. .|.|.+++..
T Consensus 15 ~vl~~i~--i~~g~---~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 15 DKVLELC--HRKMG---LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp THHHHGG--GCSSE---EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred HHHHHHh--hCCCC---EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 4688998 77888 89999999999999999999998 65 8999887753
No 149
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.04 E-value=1.9e-07 Score=101.70 Aligned_cols=78 Identities=9% Similarity=0.011 Sum_probs=46.6
Q ss_pred eecCceeEEeeceeEeccCCccEE--EEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccccccCCCCCCchhh
Q 006782 45 FEKGFFIVIRACQLLAQKNHGIIL--VGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDT 122 (631)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~gekp~I--IGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~t 122 (631)
+.++... +++++|.+++|+ + +||+|+||||||||+++|+|..-....+.-.........+++++|++.++...+
T Consensus 23 ~~y~~~~-L~~vsl~i~~Ge---i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 23 VGFDSLP-DQLVNKSVSQGF---CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp C-CC--C-HHHHHHSCC-CC---EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred EEECCee-cCCCceEecCCC---eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccc
Confidence 3445555 999999999999 8 999999999999999999998511001110000111234677888776655444
Q ss_pred HHHH
Q 006782 123 LLEN 126 (631)
Q Consensus 123 l~e~ 126 (631)
+.++
T Consensus 99 v~D~ 102 (427)
T 2qag_B 99 IVST 102 (427)
T ss_dssp EEEE
T ss_pred hhhh
Confidence 4443
No 150
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.03 E-value=1.7e-05 Score=77.08 Aligned_cols=140 Identities=17% Similarity=0.176 Sum_probs=68.5
Q ss_pred EEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccccccccccCCCCCCchhhHHHHHHHhhcccccccccccccc-cc
Q 006782 69 VGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS-SS 147 (631)
Q Consensus 69 IGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~g~~I~~Pvyd~~~-~~ 147 (631)
|.|+||||||||||++.|....|+.-...+--....++.-...-.+ |.+.+-.+.-....++..++.-.|.-.. +.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~d---Y~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt 80 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKD---YNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTT---BEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCce---eEeecHHHHHHHHHcCCEEEEEEEcCceeee
Confidence 6799999999999999999887542222211111111110000011 1112223333334455555544332111 11
Q ss_pred ccCceeeeecCccEEEEeechhccccccCCC---cEEEEEEcChhhHHHHHHHHHHHHhCC-CHHHHHHHHH
Q 006782 148 RIGYRTLEVPSSRIVIIEGIYALSEKLRPLI---DLRVSVTGGVHFDLVKRVFRDIQRVGQ-EPEEIIHQIS 215 (631)
Q Consensus 148 rs~~~~~~v~~a~VLIvEGi~lL~dEl~~~l---DlkIfVdad~d~rLiRRI~RDv~erG~-s~e~Vi~q~~ 215 (631)
....-...+.....+|++...-....+...+ -..||+..+....|.+|+. .||. +.+.+..++.
T Consensus 81 ~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~----~Rg~e~~e~i~~Rl~ 148 (186)
T 1ex7_A 81 TVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLE----GRGTETEESINKRLS 148 (186)
T ss_dssp EHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHH----HHCCSCHHHHHHHHH
T ss_pred ecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHH----hcCCCCHHHHHHHHH
Confidence 0000001123345677776555544444433 2568999887776666654 4575 4555555553
No 151
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.02 E-value=1.5e-06 Score=84.16 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=44.2
Q ss_pred EeccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-------CceEEEECCccc-cccccccccCCCCCCchhhHHHH
Q 006782 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-------SIAVITMDNYND-SSRIIDGNFDDPRLTDYDTLLEN 126 (631)
Q Consensus 59 ~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-------~~G~I~lDg~~~-~~~~i~~vfq~p~l~d~~tl~e~ 126 (631)
-+++|+ +++|+||||||||||+++|++.+ + ..+.+.+++... ....+.+++|...+++. ++.++
T Consensus 21 gi~~G~---~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~ 93 (231)
T 4a74_A 21 GIETQA---ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-EVLKH 93 (231)
T ss_dssp SEESSE---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHH-HHHHT
T ss_pred CCCCCc---EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHH-HHhhc
Confidence 467788 99999999999999999999965 3 445787777542 12345556665554432 44444
No 152
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.00 E-value=1.7e-05 Score=76.81 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp 91 (631)
+++|+||||||||||+++|.+.++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 799999999999999999999874
No 153
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.00 E-value=1.6e-05 Score=76.29 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=29.1
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.++.+|+|.|++||||||+++.|+..+ +...|..|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l-~~~~i~~d~~ 54 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL-GIPQISTGEL 54 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-CCcEEehhHH
Confidence 445689999999999999999999876 3345666543
No 154
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.93 E-value=1.8e-06 Score=93.93 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=36.5
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCc
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~ 101 (631)
.+|+++ + ..+|+ +++|+||||||||||+++|.+.+ |..|.|.+.+.
T Consensus 157 ~~L~~l-~-~~~gg---ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 157 DNFRRL-I-KRPHG---IILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp HHHHHH-H-TSSSE---EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred HHHHHH-H-HhcCC---eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 355665 3 24566 89999999999999999999998 67787777664
No 155
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.91 E-value=3.8e-06 Score=86.94 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=37.1
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEE---CCccccc-------cccccccCCCCCC
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRLT 118 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~l---Dg~~~~~-------~~i~~vfq~p~l~ 118 (631)
+..|+ +++|+||||||||||+++|+++. |+.|.|.+ +|.+... +.++++||.|...
T Consensus 166 ~l~ge---iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 166 YLKGK---ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp HHSSS---EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred HhcCC---eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence 33566 89999999999999999999998 89999998 7754321 2478899998754
No 156
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.88 E-value=7.5e-06 Score=76.23 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=26.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
.+|+|+|+.||||||+++.|+..+ +...+..|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l-g~~~id~D~ 40 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL-KLEVLDTDM 40 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH-TCCEEEHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCCEEEChH
Confidence 489999999999999999999976 334555554
No 157
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.88 E-value=4.8e-06 Score=86.33 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=37.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC-CCceEEEE---CCccccc-------cccccccCCCCCC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRLT 118 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~l---Dg~~~~~-------~~i~~vfq~p~l~ 118 (631)
+++|+||||||||||+++|. .+ |..|.|.+ +|.+... ..+++++|+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 89999999999999999999 77 88999998 7764322 2468899998653
No 158
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.85 E-value=5.7e-07 Score=91.95 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=39.2
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcc
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~ 102 (631)
..+++++++.+++| ++|.||||+|||||+++|++.+ ..+.|.+++..
T Consensus 33 ~~~l~~~~l~~~~G-----vlL~Gp~GtGKTtLakala~~~-~~~~i~i~g~~ 79 (274)
T 2x8a_A 33 PDQFKALGLVTPAG-----VLLAGPPGCGKTLLAKAVANES-GLNFISVKGPE 79 (274)
T ss_dssp HHHHHHTTCCCCSE-----EEEESSTTSCHHHHHHHHHHHT-TCEEEEEETTT
T ss_pred HHHHHHcCCCCCCe-----EEEECCCCCcHHHHHHHHHHHc-CCCEEEEEcHH
Confidence 34678888888765 8999999999999999999998 34788888754
No 159
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.84 E-value=7e-06 Score=77.89 Aligned_cols=60 Identities=13% Similarity=0.009 Sum_probs=40.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCccccc-cccccccCCCCCCchhhHHHHHHH
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-RIIDGNFDDPRLTDYDTLLENIRG 129 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~~-~~i~~vfq~p~l~d~~tl~e~L~~ 129 (631)
+++|+|||||||||+++.|++. ..|.+.+++..... ...+++++....+...++.+++..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~--~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ--LDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--SSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc--cCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHH
Confidence 8999999999999999999985 45677777653221 233455554333334466666654
No 160
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.81 E-value=1.3e-06 Score=84.15 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=38.6
Q ss_pred ecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEE--EECCcc
Q 006782 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVI--TMDNYN 102 (631)
Q Consensus 46 ~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I--~lDg~~ 102 (631)
..+...+.+.+++..++|. +|+|+|+|||||||+++.|++.++..|.+ .+|+..
T Consensus 8 ~~~~~~~~~~~~~~~~~g~---~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 8 HECSVEKVDRQRLLDQKGC---VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp --CCCCHHHHHHHHTSCCE---EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccccCHHHHHHhcCCCCe---EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 3344445566666666666 99999999999999999999988433444 777654
No 161
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.80 E-value=3.1e-05 Score=72.79 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+|+|+|++||||||+++.|+..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999865
No 162
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.80 E-value=1.1e-05 Score=76.62 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=27.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.+|+|.|++||||||+++.|+..+ +...+..|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d~~ 46 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY-GFTHLSTGEL 46 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHHHH
Confidence 489999999999999999999987 3445555554
No 163
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.79 E-value=2.2e-06 Score=85.26 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=44.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHH---HhC-CCceEEEECCcccc---ccccccccCCCCCCchhhHHHHHHH
Q 006782 66 IILVGVAGPSGAGKTVFTEKVL---NFM-PSIAVITMDNYNDS---SRIIDGNFDDPRLTDYDTLLENIRG 129 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~---~ll-p~~G~I~lDg~~~~---~~~i~~vfq~p~l~d~~tl~e~L~~ 129 (631)
+.+|+|+|||||||||++++|+ +.. ++.|.|..++.... ...+..++|++.+++..++.+++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4489999999999999999999 655 45566555443211 1223445666677777788887754
No 164
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.77 E-value=2.2e-05 Score=74.21 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=27.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
+.+|+|.|++||||||+++.|+..+ +...|..|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l-~~~~i~~d~~ 43 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDL 43 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHHHH
Confidence 4589999999999999999999876 3445555543
No 165
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.77 E-value=8.9e-05 Score=73.66 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=27.3
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCC
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp 91 (631)
|.++++......+..+|.|.|++||||||+++.|++.++
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 567777776444556999999999999999999999983
No 166
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.77 E-value=3.3e-06 Score=81.97 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=36.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCcccc-----ccccccccCCC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-----SRIIDGNFDDP 115 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~~~~-----~~~i~~vfq~p 115 (631)
+++|+||||||||||+++|++.+++.| |.++++... .+.+++++|+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEETTSSEEEEEEEET
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhHhhhceEEEEEEec
Confidence 699999999999999999999986557 888876432 23456666653
No 167
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.75 E-value=4.5e-06 Score=87.24 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=38.9
Q ss_pred eEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEE---CCccccc------cccccccCCCCCCc----hhhH
Q 006782 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS------RIIDGNFDDPRLTD----YDTL 123 (631)
Q Consensus 58 l~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~l---Dg~~~~~------~~i~~vfq~p~l~d----~~tl 123 (631)
+.+.+|+ +++|+|+||||||||+++|.+.. +..|.|.+ +|...+. ...++++|.|.+.. ..++
T Consensus 168 ~~~~~G~---~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDK---TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTS---EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCC---EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 4555677 89999999999999999999988 78899987 5543321 12678999987654 3455
Q ss_pred HHHH
Q 006782 124 LENI 127 (631)
Q Consensus 124 ~e~L 127 (631)
++|
T Consensus 245 -e~l 247 (307)
T 1t9h_A 245 -EEL 247 (307)
T ss_dssp -HHH
T ss_pred -HHH
Confidence 666
No 168
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.73 E-value=4.7e-06 Score=92.80 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=43.0
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcc
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~ 102 (631)
.+++++++.+++|. +++|+|||||||||++++|++++ |+.|.|.++|..
T Consensus 248 ~~l~~l~~~v~~g~---~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKF---SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTC---CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 35677888888888 79999999999999999999999 789999998753
No 169
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.70 E-value=1.1e-06 Score=102.12 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=34.1
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC--CCceE
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAV 95 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll--p~~G~ 95 (631)
..++++++|. |+ +++|+||||||||||+|+|++.. +..|.
T Consensus 566 ~~vl~disl~---g~---i~~I~GpNGsGKSTlLr~iagl~~~~~~G~ 607 (765)
T 1ewq_A 566 EFVPNDLEMA---HE---LVLITGPNMAGKSTFLRQTALIALLAQVGS 607 (765)
T ss_dssp CCCCEEEEES---SC---EEEEESCSSSSHHHHHHHHHHHHHHHTTTC
T ss_pred ceEeeeccCC---Cc---EEEEECCCCCChHHHHHHHHhhhhhcccCc
Confidence 4578999998 77 89999999999999999999985 45553
No 170
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.69 E-value=5.1e-06 Score=78.31 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=27.0
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.+|.|+|++||||||+++.|+..+ +...+..|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l-~~~~i~~d~~ 39 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT-KRILYDSDKE 39 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCCEEEChHH
Confidence 378999999999999999999887 3345555543
No 171
>2fbl_A Hypothetical protein NE1496; APC5855, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.90A {Nitrosomonas europaea} SCOP: d.63.1.2
Probab=97.64 E-value=0.00016 Score=68.28 Aligned_cols=94 Identities=14% Similarity=0.050 Sum_probs=71.3
Q ss_pred eeeeecCCCCCCchhccce-eeeeecCCEEEEEEeeeecCCCeeecceeEeeeehhhHHHHhhcCCeEEEEEEeeeeEee
Q 006782 280 TYDIYLLPPGEDPDACQSY-LRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFY 358 (631)
Q Consensus 280 f~DIYl~pP~~d~~~tde~-LRvR~~dg~~~LtykG~~~d~p~isrp~~ef~V~v~il~GL~~LGy~~~a~v~k~re~y~ 358 (631)
..+.|+..+ .+.. +|+|..|..+.|||||+. .++|.+.+++|+...-.-|+++. .+..|.|+|.+|.
T Consensus 25 i~QgYl~~~------~~~~~vRvR~~g~~~~lT~Kg~~----g~~R~E~E~~I~~~~~~~ll~~~--~~~~I~K~Ry~~~ 92 (153)
T 2fbl_A 25 LRQGYLTTP------TDSIELRLRQQGTEYFMTLKSEG----GLSRQEYEIQIDVTQFEMLWPAT--EGRRVEKTRYSGK 92 (153)
T ss_dssp EEEEESSCT------TSSSEEEEEEETTEEEEEEEC----------CEEEEEECHHHHHHHGGGG--TTSEEEEEEEEEE
T ss_pred EEEEEecCC------CCceEEEEEEeCCEEEEEEEcCC----CceeEEEEEECCHHHHHHHHhhC--CCCEEEEEEEEEE
Confidence 347898765 2456 899999999999999998 47799999999977777776643 3778999999999
Q ss_pred cCc-EEEEeecccccC--cceEEEEeccHH
Q 006782 359 DDR-VCVKTDWLEQLN--RKYVQVQGRDRL 385 (631)
Q Consensus 359 ~~~-~~i~lD~ve~Lg--~~FveI~g~~~~ 385 (631)
.++ .++.+|.++|-. =.++||+-.+.+
T Consensus 93 ~~~~~~~evD~f~g~~~gL~~aEvE~~~e~ 122 (153)
T 2fbl_A 93 LPDGQLFELDVFAGHLSPLMLVEVEFLSED 122 (153)
T ss_dssp CTTCCEEEEEEECGGGTTCEEEEEEESSHH
T ss_pred cCCcEEEEEEEECCcCCCeEEEEEEecCcc
Confidence 999 999999999843 358888876654
No 172
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.63 E-value=3.7e-06 Score=77.90 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=26.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
+|+|.|++||||||+++.|+..+ +...+..|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL-NIPFYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCEEECcHH
Confidence 58999999999999999999976 3345555543
No 173
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.63 E-value=1.3e-06 Score=95.10 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=31.1
Q ss_pred EeecCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 44 SFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 44 s~~~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
++.++...++++++|.+ +|+|+||||||||+++|++..
T Consensus 18 ~~~y~~~~vl~~vsf~I---------~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 18 PNQVYRKSVKRGFEFTL---------MVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp CCCTTTTTCC-CCCEEE---------EEECCTTSSHHHHHHHHTTCC
T ss_pred ceeECCEEEecCCCEEE---------EEECCCCCcHHHHHHHHhCCC
Confidence 34445567899999865 999999999999999999986
No 174
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.62 E-value=5.9e-05 Score=70.87 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=27.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.+|.|+|++||||||+++.|+..+ +...+..|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~-~~~~~~~d~~ 45 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS-GLKYINVGDL 45 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh-CCeEEEHHHH
Confidence 368899999999999999999876 4455666554
No 175
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.61 E-value=1.3e-05 Score=85.52 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=31.8
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHHhC-CC-ceEEEECC
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDN 100 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~-~G~I~lDg 100 (631)
+++|+ +++|+|||||||||++++|++.+ |. .|.|...+
T Consensus 133 ~~~g~---~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 133 HRKMG---LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp TSSSE---EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred hcCCC---EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 55666 89999999999999999999998 54 68886544
No 176
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.60 E-value=0.00014 Score=73.15 Aligned_cols=25 Identities=28% Similarity=0.666 Sum_probs=22.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+|.|+|++||||||+++.|+..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999874
No 177
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.58 E-value=1.3e-05 Score=81.89 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=37.1
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCce
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G 94 (631)
.+|+++++.+++|+ +++|+|+||||||||++.|++.+ +..|
T Consensus 23 ~~Ld~i~~~l~~G~---~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 23 TGINDKTLGARGGE---VIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp TTHHHHHCSBCTTC---EEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCCCe---EEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 45899999999999 99999999999999999999998 5545
No 178
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.58 E-value=3.8e-05 Score=72.38 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=27.8
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
++.+|.|.|++||||||+++.|+..+ +...+..|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l-~~~~i~~D~~ 39 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL-RLPLLSKDAF 39 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc-CCeEecHHHH
Confidence 35689999999999999999999876 3334555543
No 179
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.58 E-value=6.2e-05 Score=73.41 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=22.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+|+|.|+.||||||+++.|+..+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999988
No 180
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.55 E-value=3.4e-05 Score=82.27 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=46.4
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC--CCceEEEEC-Cccc---cccccccccCCCCCCchhhHHH
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD-NYND---SSRIIDGNFDDPRLTDYDTLLE 125 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll--p~~G~I~lD-g~~~---~~~~i~~vfq~p~l~d~~tl~e 125 (631)
++++++.+ +|+ +++|+|+||||||||+++|.+.. +..|.|..+ |... ....+++++|++.+++..++.+
T Consensus 206 l~~L~~~~-~G~---~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEAL-TGR---ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHHH-TTS---EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHhc-CCC---EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 34555543 466 89999999999999999999987 578998876 4321 2245678888888888777765
No 181
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.52 E-value=0.00012 Score=69.85 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=23.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMP 91 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp 91 (631)
+.+|.|.|++||||||+++.|+..++
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999999873
No 182
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.52 E-value=2e-05 Score=75.38 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=29.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEEECCcc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYN 102 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll-p~---~G~I~lDg~~ 102 (631)
.+++|+|+||||||||++.|.+++ |. .|.|.+|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 379999999999999999999998 65 8999998764
No 183
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.48 E-value=2.7e-05 Score=86.56 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=28.2
Q ss_pred eeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 57 sl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+..+.+|+ +++|+|+||||||||++.+++..
T Consensus 275 ~g~i~~G~---i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 275 GGGFFKDS---IILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp TSSEESSC---EEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 44778888 99999999999999999999987
No 184
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.46 E-value=8.7e-06 Score=80.72 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=24.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPS 92 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~ 92 (631)
+.+|+|.|+.||||||+++.|+..+++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 568999999999999999999999843
No 185
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.45 E-value=5.2e-05 Score=78.90 Aligned_cols=35 Identities=11% Similarity=0.009 Sum_probs=27.2
Q ss_pred ccccCceeeeecCccEEE----EeechhccccccCCCcE
Q 006782 146 SSRIGYRTLEVPSSRIVI----IEGIYALSEKLRPLIDL 180 (631)
Q Consensus 146 ~~rs~~~~~~v~~a~VLI----vEGi~lL~dEl~~~lDl 180 (631)
...++|+.+++..+++++ -++.+++.|||+..+|.
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~ 256 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDD 256 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCH
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCH
Confidence 456777888888877765 35678888999999997
No 186
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.44 E-value=6.7e-05 Score=74.71 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=23.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+|+|.|+.||||||+++.|+..+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999976
No 187
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.39 E-value=0.00011 Score=73.35 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=28.5
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
.+|.+|+|.||+||||||+++.|+..+ +.-.|+.|+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~-g~~~is~~~ 62 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH-CYCHLSTGD 62 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh-CCeEEecHH
Confidence 356789999999999999999999876 344555554
No 188
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.39 E-value=0.00013 Score=70.65 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=26.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.|+|+|++||||||+++.|+..+ +.-.|+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-GIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-SCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHH
Confidence 48999999999999999998887 4445666554
No 189
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.36 E-value=0.00011 Score=77.02 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=34.9
Q ss_pred eeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECC
Q 006782 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (631)
Q Consensus 54 ~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg 100 (631)
++++|...+++ +|+|+|++|+||||++..|++.+ +..+.|.+.+
T Consensus 96 ~~l~~~~~~~~---vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 96 YRIDFKENRLN---IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp CCCCCCTTSCE---EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCccccCCCCe---EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 67888766555 99999999999999999999998 5445555443
No 190
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.34 E-value=5.6e-05 Score=79.93 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=33.5
Q ss_pred EeeceeEecc--CCccEEEEEECCCCCcHHHHHHHHHHhC-CCc
Q 006782 53 IRACQLLAQK--NHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI 93 (631)
Q Consensus 53 L~~Isl~i~~--gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~ 93 (631)
...|++.+.+ ++ .++|+|+||||||||+++|++++ |..
T Consensus 158 ~~~v~~~v~~~lg~---k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 158 WKFIPKEARPFFAK---TVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GGGSCTTTGGGTCE---EEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hhhCCHHHHHhhhC---eEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 4568888888 88 79999999999999999999999 655
No 191
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.33 E-value=0.00011 Score=74.80 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=26.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEEC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lD 99 (631)
|.+|.|.|++||||||+++.|+..+++...|+.|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 3589999999999999999999864344445555
No 192
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.32 E-value=8.3e-05 Score=71.82 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=26.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.|+|+|++||||||+++.|+..+ +.-.++.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY-EIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEeeHHHH
Confidence 58899999999999999998876 3445665543
No 193
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.29 E-value=6.6e-05 Score=79.84 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=28.7
Q ss_pred EeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CC-ceEEE
Q 006782 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVIT 97 (631)
Q Consensus 59 ~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~-~G~I~ 97 (631)
...+++ +|+|+||||||||||+++|.+.+ |. .+.|.
T Consensus 119 ~~~~~g---~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~ 156 (356)
T 3jvv_A 119 SDVPRG---LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHIL 156 (356)
T ss_dssp HHCSSE---EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred HhCCCC---EEEEECCCCCCHHHHHHHHHhcccCCCCcEEE
Confidence 344555 89999999999999999999998 43 45554
No 194
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.28 E-value=1.4e-05 Score=80.10 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=30.9
Q ss_pred eeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCcc
Q 006782 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (631)
Q Consensus 57 sl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~~ 102 (631)
++.+.+ + +++|+||||||||||+++|++++ |+.|.|.+++..
T Consensus 22 ~~~~~~-~---~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~ 64 (227)
T 1qhl_A 22 TFDLDE-L---VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (227)
T ss_dssp EECHHH-H---HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------
T ss_pred EEEEcC-c---EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEE
Confidence 344444 4 78999999999999999999998 888988888764
No 195
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.24 E-value=0.00013 Score=67.81 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+|+|+|++||||||++++|++.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999987
No 196
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.22 E-value=6.5e-05 Score=72.32 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=31.0
Q ss_pred EEeecee-EeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 52 VIRACQL-LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 52 vL~~Isl-~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.|+++.. .+++|+ +++|+||||||||||++.|++.+
T Consensus 11 ~Ld~~~~ggi~~G~---~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 11 DFDKLIQGGIPQGF---FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp HHHGGGTTSEETTC---EEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCCC---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 4666666 677888 99999999999999999999876
No 197
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.20 E-value=0.00024 Score=69.12 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=28.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
+.+|.|.|++||||||+++.|+..+ +...|..|+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~ 38 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF-HAAHLATGDM 38 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-CceEEehhHH
Confidence 4589999999999999999999987 3445666554
No 198
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.19 E-value=0.00014 Score=68.25 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=28.6
Q ss_pred eeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 54 ~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+++++.+.+| +.+|+|+|||||||++++|...+
T Consensus 18 ~~~~~~~~~g----~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG----FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS----EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC----cEEEECCCCCCHHHHHHHHHHHH
Confidence 5677777654 79999999999999999999988
No 199
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.17 E-value=9.4e-05 Score=78.21 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=49.4
Q ss_pred Eeec-eeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC--C-Cc----eE-EEECCcccc-ccccccccCCCCCCchhh
Q 006782 53 IRAC-QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--P-SI----AV-ITMDNYNDS-SRIIDGNFDDPRLTDYDT 122 (631)
Q Consensus 53 L~~I-sl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll--p-~~----G~-I~lDg~~~~-~~~i~~vfq~p~l~d~~t 122 (631)
|+.+ .+.+++|+ +++|+||||||||||++.|++.. + +. |. |.+|+.... ...+++++|.+.++.. +
T Consensus 120 LD~lL~ggi~~G~---i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 120 LDKLLGGGIETQA---ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHTSSEESSE---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHH-H
T ss_pred HHHHhcCCCCCCe---EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHH-H
Confidence 4444 56788888 99999999999999999999987 3 22 45 888876532 2456667776655432 4
Q ss_pred HHHH
Q 006782 123 LLEN 126 (631)
Q Consensus 123 l~e~ 126 (631)
+.++
T Consensus 196 v~~n 199 (349)
T 1pzn_A 196 VLKH 199 (349)
T ss_dssp HGGG
T ss_pred HhhC
Confidence 4443
No 200
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.16 E-value=0.00014 Score=86.12 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=34.3
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
...|+++++|.+++|+ +++|+|||||||||++|.+++.
T Consensus 659 ~~~V~ndvsl~~~~g~---i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 659 DQYVPNNTDLSEDSER---VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSSCCEEEEECTTSCC---EEEEESCCCHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCe---EEEEECCCCCchHHHHHHHHHH
Confidence 3457899999999998 9999999999999999999765
No 201
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.14 E-value=0.00022 Score=83.46 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=33.8
Q ss_pred ceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 49 ~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
...++++++|. ++|+ +++|+||||||||||+|+|++..
T Consensus 594 ~~~vlndisl~-~~g~---i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRR---MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SCCCCEEEEEC-SSSC---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred Cceeeeccccc-CCCc---EEEEECCCCCChHHHHHHHHHHH
Confidence 34579999999 7777 99999999999999999999974
No 202
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.13 E-value=0.00037 Score=67.83 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=33.0
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHHh--C-C-----CceEEEECCcc
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-P-----SIAVITMDNYN 102 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~l--l-p-----~~G~I~lDg~~ 102 (631)
+++|+ +++|+||||||||||++.|++. + + +.+.+.+++..
T Consensus 21 i~~G~---~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 21 IETGS---ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EETTS---EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCe---EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 56778 9999999999999999999994 3 2 56788887654
No 203
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.11 E-value=0.00014 Score=72.26 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=37.9
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.+++++++.+++| ++|.||+|+|||||+++|++.+ ..+.+.+++.
T Consensus 39 ~~~~~~~~~~~~g-----~ll~G~~G~GKTtl~~~i~~~~-~~~~i~~~~~ 83 (254)
T 1ixz_A 39 SRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEA-RVPFITASGS 83 (254)
T ss_dssp HHHHHTTCCCCSE-----EEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHH
T ss_pred HHHHHcCCCCCCe-----EEEECCCCCCHHHHHHHHHHHh-CCCEEEeeHH
Confidence 4578888888665 8899999999999999999998 4678887764
No 204
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.08 E-value=0.00042 Score=65.69 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=22.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+.|+|+|++|||||||++.+.+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999976
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.07 E-value=0.0002 Score=67.23 Aligned_cols=37 Identities=32% Similarity=0.380 Sum_probs=29.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC-C-CceEEEECCcc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYN 102 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll-p-~~G~I~lDg~~ 102 (631)
..+|+|+|++||||||+++.|++.+ + +...+.+|+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 3489999999999999999999987 2 33377777654
No 206
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.06 E-value=0.00015 Score=75.56 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=31.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC---------CCceEEEECCcc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM---------PSIAVITMDNYN 102 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll---------p~~G~I~lDg~~ 102 (631)
..+++|+|+||||||||++.|.+.. ++.|.|.+|+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~ 49 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHH
Confidence 4589999999999999999999874 467777777754
No 207
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.04 E-value=0.00025 Score=66.66 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=25.7
Q ss_pred eEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 58 l~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
|.+.+|+ .++|.||+|+|||||+++|++.+
T Consensus 33 ~~~~~g~---~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 33 FNPEEGK---GLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCGGGCC---EEEECCSSSSSHHHHHHHHHHHH
T ss_pred ccccCCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 3445566 79999999999999999999987
No 208
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.03 E-value=0.00018 Score=72.77 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=38.3
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
..+++++++.+++| ++|.||+|+|||||+++|++.+ ..+.|.+++.
T Consensus 62 ~~~l~~~~~~~~~g-----vll~Gp~GtGKTtl~~~i~~~~-~~~~i~~~~~ 107 (278)
T 1iy2_A 62 PSRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEA-RVPFITASGS 107 (278)
T ss_dssp HHHHHHTTCCCCCE-----EEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHH
T ss_pred HHHHHHcCCCCCCe-----EEEECCCcChHHHHHHHHHHHc-CCCEEEecHH
Confidence 34678888888655 8899999999999999999998 4678887764
No 209
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.00 E-value=0.00034 Score=83.07 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=32.5
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHH
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ 88 (631)
..|+++++|.+++|+ +++|+|||||||||++|.++.
T Consensus 649 ~~v~ndisl~~~~g~---i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 649 AFIPNDVYFEKDKQM---FHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CCCCEEEEEETTTBC---EEEEECCTTSSHHHHHHHHHH
T ss_pred eeecccceeecCCCe---EEEEECCCCCCHHHHHHHHHH
Confidence 457899999999888 999999999999999999943
No 210
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.98 E-value=0.00042 Score=67.46 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=28.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
+..|.|.|++||||||+++.|+..+ +...|..|+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~l 39 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY-GLAHLSTGDM 39 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CceEEehhHH
Confidence 3579999999999999999999987 4456666553
No 211
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.97 E-value=7.7e-05 Score=71.10 Aligned_cols=35 Identities=31% Similarity=0.256 Sum_probs=28.4
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.++++ |.+.++. .|+|+|++|||||||++.|.+..
T Consensus 16 ~~l~~--~~~~~~~---~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 16 PDIRH--LPSDTGI---EVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSGGG--SSCSCSE---EEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCHhH--CCCCCCc---EEEEECCCCCCHHHHHHHHhCCC
Confidence 45666 6676666 79999999999999999998764
No 212
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.94 E-value=0.00018 Score=77.06 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=34.9
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+++++++.+++|+ +++|.||+|||||||+++|++.+
T Consensus 156 ~~~l~~~~~~i~~~~---~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNIPKKR---YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCCTTCC---EEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCC---EEEEECCCCCCHHHHHHHHHhhc
Confidence 457889999999998 89999999999999999999986
No 213
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.94 E-value=0.00023 Score=66.13 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=28.0
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHHhCCCce--EEEECC
Q 006782 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIA--VITMDN 100 (631)
Q Consensus 62 ~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G--~I~lDg 100 (631)
+|+ .++|.||+|+|||||+++|++.++..| .+.+++
T Consensus 35 ~g~---~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 35 HGQ---FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp CCS---EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CCC---EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 566 799999999999999999999872234 454443
No 214
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.91 E-value=0.00041 Score=83.19 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=34.1
Q ss_pred CceeEEeeceeEecc-------CCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 48 GFFIVIRACQLLAQK-------NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 48 g~~~vL~~Isl~i~~-------gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+...|+++++|.+++ |+ +++|+|||||||||++|.+ +++
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g~---i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKAY---CVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CCC---EEEEECCTTSSHHHHHHHH-HHH
T ss_pred CCceEeeeeeeccccccccCCCCc---EEEEECCCCCChHHHHHHH-HHH
Confidence 345689999999876 66 9999999999999999999 775
No 215
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.88 E-value=0.00039 Score=75.46 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=32.3
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.++++|.++.+. .|+|+|+||||||||+++|++..
T Consensus 147 ~~~i~lelk~g~---~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIA---DVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSC---SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCC---EEEEECCCCCcHHHHHHHHHcCC
Confidence 579999999998 79999999999999999999874
No 216
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.87 E-value=0.00091 Score=64.73 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=26.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.|+|.|++||||||+++.|+..+ +...|..|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-g~~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY-GIPQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHH
Confidence 48999999999999999999876 3445666553
No 217
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.85 E-value=0.00067 Score=66.42 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp 91 (631)
+|+|+||||||||||+++|.+.+|
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 899999999999999999999875
No 218
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.85 E-value=0.00079 Score=62.61 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=26.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEE--EECCc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVI--TMDNY 101 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I--~lDg~ 101 (631)
.+|.|+|++||||||+++.|+..++ .+.+ ..|.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~-~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP-EPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS-SCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC-CCeEEeccchH
Confidence 4799999999999999999999883 2334 35544
No 219
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.85 E-value=0.0007 Score=68.04 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=29.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.+|.|+||+|||||||++.|++.+ +...|+.|..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~-~~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET-GWPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-CCCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC-CCeEEeccHH
Confidence 479999999999999999999887 4457888875
No 220
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.71 E-value=0.00011 Score=76.73 Aligned_cols=43 Identities=26% Similarity=0.269 Sum_probs=34.4
Q ss_pred CceeEEeeceeEeccC----CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 48 GFFIVIRACQLLAQKN----HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 48 g~~~vL~~Isl~i~~g----ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
|...+++++++.+..+ +.+..++|.||+|+|||||+++|++.+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4445678888887654 233479999999999999999999987
No 221
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.71 E-value=0.00061 Score=76.49 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=32.5
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCce-EE-EECCcc
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VI-TMDNYN 102 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G-~I-~lDg~~ 102 (631)
+++|+ +|+|+|+||||||||+++|++.+ |..| .+ .+|+..
T Consensus 366 ~~~G~---iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 366 ERQGF---TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp GGSCE---EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred cccce---EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 44555 89999999999999999999998 6665 45 477754
No 222
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.70 E-value=0.00063 Score=65.84 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=29.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC-CCce--EEEECCc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM-PSIA--VITMDNY 101 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll-p~~G--~I~lDg~ 101 (631)
.+|.|.|++||||||+++.|++.+ |..| .+.+|+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 489999999999999999999988 3556 7888754
No 223
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.69 E-value=0.0011 Score=62.78 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=22.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+.|+|+|++|||||||++.|.+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999974
No 224
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.69 E-value=0.00088 Score=67.01 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=30.1
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 63 gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
...+.+|.|+|++||||||+++.|+..++ .+.+.+|+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D 66 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGD 66 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecH
Confidence 34566999999999999999999999883 345556654
No 225
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.67 E-value=0.00057 Score=71.16 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=28.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg 100 (631)
+.+|+|+|++||||||++..|++.+ +..+.|.+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4499999999999999999999998 5555555443
No 226
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.67 E-value=0.0011 Score=63.53 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=30.1
Q ss_pred EeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 59 ~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
-+++|+ +++|+|++|||||||++.|++ .++.+.+.++.
T Consensus 16 gi~~G~---~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~ 53 (220)
T 2cvh_A 16 GFAPGV---LTQVYGPYASGKTTLALQTGL-LSGKKVAYVDT 53 (220)
T ss_dssp SBCTTS---EEEEECSTTSSHHHHHHHHHH-HHCSEEEEEES
T ss_pred CCcCCE---EEEEECCCCCCHHHHHHHHHH-HcCCcEEEEEC
Confidence 466788 999999999999999999998 43445555554
No 227
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.64 E-value=0.0011 Score=61.32 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHH
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLN 88 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ 88 (631)
|.+|.|.|++||||||+++.|+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 45899999999999999999998
No 228
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.57 E-value=0.0016 Score=61.79 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=26.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEEC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lD 99 (631)
+.+|+|.|++||||||+++.|+..+++...+.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3489999999999999999999987323345443
No 229
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.50 E-value=0.00096 Score=68.85 Aligned_cols=43 Identities=21% Similarity=0.114 Sum_probs=34.1
Q ss_pred eeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCc
Q 006782 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (631)
Q Consensus 54 ~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~ 101 (631)
++++|. +++ +++|+|++|+||||++..|++.+ +..+.|.+.+.
T Consensus 91 ~~i~~~--~~~---~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 91 RLPVLK--DRN---LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp CCCCCC--SSE---EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceeecC--CCe---EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 567776 444 89999999999999999999998 55566665544
No 230
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.48 E-value=0.0036 Score=67.55 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.6
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+.+|.|+|++||||||+++.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345699999999999999999998865
No 231
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.46 E-value=0.0013 Score=61.54 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=22.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+|.|.|++||||||+++.|+..+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999976
No 232
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.45 E-value=0.0012 Score=61.04 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=26.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.+|+|+|++||||||+++.|+..+ +...+..|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-g~~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL-GYEFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCcEEcccHH
Confidence 369999999999999999999976 3345555543
No 233
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.44 E-value=0.0011 Score=61.79 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=25.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
+|.|+|++||||||+++.|+..+ +...+..|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l-~~~~~d~d~ 37 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL-DLVFLDSDF 37 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-CCCEEcccH
Confidence 58999999999999999999987 333444443
No 234
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.42 E-value=0.0019 Score=60.47 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=26.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC--CCceEEEEC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD 99 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll--p~~G~I~lD 99 (631)
+|+|.|++||||||+++.|+..+ .+...+..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 69999999999999999999876 244456655
No 235
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.42 E-value=0.0023 Score=68.94 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=29.4
Q ss_pred EEEEECCCCCcHHHHHHHHHH------------hC-CCceEEEECC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLN------------FM-PSIAVITMDN 100 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~------------ll-p~~G~I~lDg 100 (631)
.+||+|+||||||||+++|.+ .. |..|.+.+.+
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 899999999999999999999 33 6788888876
No 236
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.41 E-value=0.0011 Score=62.26 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=27.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
+|+|+|++||||||+++.|+..+ +...|..|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l-g~~~id~D~~ 36 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL-GVGLLDTDVA 36 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-CCCEEeCchH
Confidence 69999999999999999999976 3446666654
No 237
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.41 E-value=0.0022 Score=65.73 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=28.7
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 63 gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
..++.+|.|+||+||||||+++.|+..++ .+.++++.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEec
Confidence 34567999999999999999999998873 23455543
No 238
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.39 E-value=0.0016 Score=69.20 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=28.3
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
++++++.++.| +++|+|||||||||++.+|+..+
T Consensus 14 ~~~~~i~~~~g----~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 14 LKNVDIEFQSG----ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEEECCSE----EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccceEEecCCC----eEEEECCCCCCHHHHHHHHHHHh
Confidence 56777777643 57899999999999999999775
No 239
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.39 E-value=0.0024 Score=60.15 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=23.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+|.|.|++||||||+++.|+..+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999987
No 240
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.36 E-value=0.0016 Score=63.64 Aligned_cols=35 Identities=11% Similarity=0.386 Sum_probs=28.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
+.+|.|.|++||||||+++.|+..+ +...|+.|+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~ 41 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF-ELKHLSSGDL 41 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS-SSEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-CCeEEechHH
Confidence 4589999999999999999999887 4445666553
No 241
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.36 E-value=0.0015 Score=60.92 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=22.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+|.|.|++||||||+++.|+..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 242
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.35 E-value=0.0015 Score=61.46 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999986
No 243
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.33 E-value=0.0027 Score=60.65 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=28.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC-C---CceEEEECC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDN 100 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll-p---~~G~I~lDg 100 (631)
+.+++|+|++|||||||++.|.+.+ + ..+.|..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 3489999999999999999999876 2 356666653
No 244
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.31 E-value=0.0027 Score=63.64 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
-+||+|+.||||||+++.|+..+ +...|+.++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~-g~~~is~gd 41 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF-GIPQISTGD 41 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCCEECHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh-CCCeeechH
Confidence 58999999999999999999876 344555544
No 245
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.30 E-value=0.0015 Score=62.30 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=22.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+|+|.|++||||||+++.|+..+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999875
No 246
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.28 E-value=0.0015 Score=60.88 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=19.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+|.|.|++||||||+++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999887
No 247
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.26 E-value=0.0017 Score=62.08 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+|+|.|++||||||+++.|+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999876
No 248
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.19 E-value=0.0022 Score=66.27 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=26.8
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHH-hC-CCceEEEECCc
Q 006782 63 NHGIILVGVAGPSGAGKTVFTEKVLN-FM-PSIAVITMDNY 101 (631)
Q Consensus 63 gekp~IIGI~GpsGSGKSTLlr~L~~-ll-p~~G~I~lDg~ 101 (631)
+..+. +.|.||+|+||||++++|++ ++ |+.|.+.+++.
T Consensus 34 ~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 34 RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 44344 89999999999999999999 55 77788877764
No 249
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.17 E-value=0.00086 Score=70.39 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=34.0
Q ss_pred cCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 47 ~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
++...+++++++...++. +|+|+|++|+|||||++.|++.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~---~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 40 ALSTQLLDAIMPYCGNTL---RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHHHHGGGCSCSE---EEEEEECTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCcccCCCE---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 344556788888776555 89999999999999999999886
No 250
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.17 E-value=0.0027 Score=64.15 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=25.5
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+++|+ +++|+||||||||||+..+++.+
T Consensus 27 l~~G~---i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGT---VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCC---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 56788 99999999999999999999866
No 251
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.16 E-value=0.0018 Score=68.84 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=30.4
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.++++++.+.+| +++|+|||||||||++++|..+.
T Consensus 16 ~~~~~~~~~~~g----~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 16 NLAPGTLNFPEG----VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TCCSEEEECCSE----EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeEEEEcCC----eEEEECCCCCChhHHHHHHHHhc
Confidence 467888888654 79999999999999999999874
No 252
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.15 E-value=0.0035 Score=59.92 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=27.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC-C---CceEEEEC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMD 99 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll-p---~~G~I~lD 99 (631)
+.+++|+|++|||||||+..|...+ . ..+.|..|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 4589999999999999999999876 1 34555544
No 253
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.14 E-value=0.0036 Score=67.49 Aligned_cols=29 Identities=17% Similarity=0.418 Sum_probs=25.6
Q ss_pred EeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 59 ~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+..++ +++|+||||||||||+++|..++
T Consensus 22 ~~~~~~---~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 22 GFGESN---FTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp ECTTCS---EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EecCCC---EEEEECCCCCCHHHHHHHHHhhh
Confidence 345566 89999999999999999999998
No 254
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.13 E-value=0.0023 Score=67.45 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=27.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg 100 (631)
..+|+|+|++|||||||++.|.+.+ +..+.|.+.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 4689999999999999999999987 4444444433
No 255
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.13 E-value=0.0011 Score=63.45 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999987
No 256
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.12 E-value=0.0011 Score=74.72 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=42.9
Q ss_pred cCceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CC-ceEEEECCc
Q 006782 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNY 101 (631)
Q Consensus 47 ~g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~-~G~I~lDg~ 101 (631)
.|...+++.+++.+..|. .++|.||+|+|||||+++|++.+ +. .+.+.+++.
T Consensus 44 ~G~~~~l~~l~~~i~~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKR---HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp CSCHHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred ECchhhHhhccccccCCC---EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 456667899999999998 79999999999999999999998 43 366666543
No 257
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.12 E-value=0.0047 Score=64.87 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=30.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
.+|.|+||+|||||||++.|+..+ +...|+.|.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l-~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL-PCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-CEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCcEEeccch
Confidence 479999999999999999999998 4667888876
No 258
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.12 E-value=0.0038 Score=60.63 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=28.8
Q ss_pred EeccCCccEEEEEECCCCCcHHHHHHHHHHhC--CCceEEEECC
Q 006782 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN 100 (631)
Q Consensus 59 ~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll--p~~G~I~lDg 100 (631)
-+++|+ +++|+|++|||||||+..++... .+.+.+.++.
T Consensus 19 Gl~~G~---~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERN---VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTC---EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCc---EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 467788 89999999999999987776544 3445555543
No 259
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.10 E-value=0.0046 Score=64.91 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=30.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
+.+|.|+||+|||||||+..|+..+ ....|+.|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL-NGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT-TEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC-ccceeecCcc
Confidence 4589999999999999999999988 4567888875
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.09 E-value=0.0024 Score=65.92 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=24.5
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC-CCce
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll-p~~G 94 (631)
.+|+|+|++||||||++..|++.+ +..|
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 399999999999999999999988 4344
No 261
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.08 E-value=0.0036 Score=59.00 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=20.8
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+++++++..+.. .|+|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~----ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG----KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C----EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc----EEEEECCCCCCHHHHHHHHhcC
Confidence 3578888876554 4999999999999999999874
No 262
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.98 E-value=0.0016 Score=72.83 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=38.0
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEECCc
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lDg~ 101 (631)
..+++++++.+ +|. +++|.||+|+|||||+++|++.+ +..+.|.+++.
T Consensus 96 ~~~l~~~~~~~-~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGP---ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSC---EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHhcccC-CCC---EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 34566777766 455 89999999999999999999998 66777777664
No 263
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.97 E-value=0.0036 Score=61.17 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+|.|-|+.||||||+++.|+..+
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 78999999999999999999987
No 264
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.86 E-value=0.0052 Score=65.35 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=29.9
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHHhC-C-CceEEEECCc
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNY 101 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p-~~G~I~lDg~ 101 (631)
+++|. ++.|.||+|||||||+..++..+ + +...+.++..
T Consensus 58 i~~G~---i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 58 YPRGR---IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp EETTE---EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCc---EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 44566 99999999999999999999886 3 2234566654
No 265
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.84 E-value=0.0069 Score=63.43 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=30.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
+.+|.|+||+|||||||+..|+..+ ..-.|+.|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL-PVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-CEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC-CCcEEecccc
Confidence 4689999999999999999999998 4557888874
No 266
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.84 E-value=0.0063 Score=64.32 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=30.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
++.+|.|+||+|||||||+..|+..+ +...|+.|..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l-~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS-CEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC-CCcEEccccc
Confidence 34589999999999999999999998 4567888875
No 267
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.83 E-value=0.0048 Score=66.55 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=30.4
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHH--HhCC------CceEEEECCcc
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVL--NFMP------SIAVITMDNYN 102 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~--~llp------~~G~I~lDg~~ 102 (631)
+++|+ +++|+||+|||||||++.|+ ..+| ..+.+.+++..
T Consensus 175 I~~Ge---i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 175 VETGS---ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCCc---EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 56777 99999999999999999665 3333 24478887653
No 268
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.78 E-value=0.0031 Score=61.23 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+|.|.|++||||||+++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999887
No 269
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.77 E-value=0.0057 Score=56.59 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998655
No 270
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.74 E-value=0.0053 Score=56.34 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=21.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..|+|+|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998753
No 271
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.73 E-value=0.0046 Score=61.25 Aligned_cols=37 Identities=27% Similarity=0.324 Sum_probs=26.8
Q ss_pred eeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 54 ~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
++..+.-++-.++.+|.|+||+||||+|.++.|+..+
T Consensus 17 ~~~~~~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 17 RGSHMTDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp -------CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCccccchhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444445555677799999999999999999999987
No 272
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.58 E-value=0.0052 Score=60.10 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=26.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
+|.|.|++||||||+++.|+..+ +...|..|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l-g~~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY-SLAHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEchHHH
Confidence 68999999999999999999876 3445555543
No 273
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.58 E-value=0.0069 Score=56.08 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=21.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
++.|+|+|++|+|||||++.|.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999884
No 274
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.57 E-value=0.0045 Score=68.65 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=35.7
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
+++++++.+++| +.|.||+|+|||||+++|++.. ..+.+.+++.
T Consensus 55 ~~~~lg~~ip~G-----vLL~GppGtGKTtLaraIa~~~-~~~~i~i~g~ 98 (499)
T 2dhr_A 55 RFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEA-RVPFITASGS 98 (499)
T ss_dssp GTTTTSCCCCSE-----EEEECSSSSSHHHHHHHHHHHT-TCCEEEEEGG
T ss_pred hhhhccCCCCce-----EEEECCCCCCHHHHHHHHHHHh-CCCEEEEehh
Confidence 466777777654 8999999999999999999998 4667777664
No 275
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.54 E-value=0.0014 Score=68.04 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=34.8
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
|...+++.++..+..|+-+. +.+.||+|+||||+++++++.+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHH
Confidence 44456778888888887443 8999999999999999999987
No 276
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.51 E-value=0.0059 Score=59.92 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=27.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
++..|.|.|+.||||||+++.|+..+ ....|..|+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~ 49 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF-CVCHLATGD 49 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-CCceecHHH
Confidence 34579999999999999999999887 344565554
No 277
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.50 E-value=0.0019 Score=61.44 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=27.3
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHH
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ 88 (631)
.+++++++..+.. -|+|+|++|+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~----ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTG----KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCE----EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCc----EEEEECCCCCCHHHHHHHHhc
Confidence 4577777765444 489999999999999999865
No 278
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.40 E-value=0.0075 Score=55.96 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHh
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
..|+|+|++|+|||||++.|.+.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999875
No 279
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.38 E-value=0.0074 Score=65.68 Aligned_cols=41 Identities=22% Similarity=0.085 Sum_probs=31.5
Q ss_pred eeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEEC
Q 006782 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD 99 (631)
Q Consensus 54 ~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~lD 99 (631)
++++|. + +.+|+|+|++||||||++..|++.+ +..+.|.+.
T Consensus 91 ~~i~l~--~---~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 91 RLPVLK--D---RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp CCCCCC--S---SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccccCC--C---CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 566765 3 3489999999999999999999998 544444443
No 280
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.31 E-value=0.026 Score=63.15 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=27.9
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhCC--CceEEEECC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDN 100 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~llp--~~G~I~lDg 100 (631)
..+.+|.|+|++||||||+++.|+..+. +.....+|+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~ 408 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG 408 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc
Confidence 3457899999999999999999998762 222345554
No 281
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.28 E-value=0.0098 Score=64.34 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=28.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
.+|+|+||+|||||||+..|+..++ ...|+.|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~-~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN-GEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT-EEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC-CeEeecCc
Confidence 4899999999999999999999884 45788887
No 282
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.19 E-value=0.013 Score=58.02 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=25.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
-+.|.||+|+||||++++|++.+ ....+.+++.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~-~~~~~~i~~~ 79 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA-KVPFFTISGS 79 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCCEEEECSC
T ss_pred eEEEECcCCCCHHHHHHHHHHHc-CCCEEEEeHH
Confidence 38899999999999999999987 2234555543
No 283
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.19 E-value=0.013 Score=61.17 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999986543
No 284
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.12 E-value=0.0099 Score=69.84 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=27.6
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHHH
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTE 84 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr 84 (631)
|++|++.++.+. ++.|+|.||||||||+-
T Consensus 26 Lkni~v~iP~~~---l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 26 LKDISVKVPRDA---LVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp CCSEEEEEESSS---EEEEESSTTSSHHHHHT
T ss_pred CCCeeEEecCCC---EEEEECCCCCCHHHHHH
Confidence 899999999999 99999999999999983
No 285
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.03 E-value=0.015 Score=59.56 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=27.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
.|.|.||+|+||||++++|+..+ ..+.+.+++
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~-~~~~i~v~~ 82 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANEC-QANFISIKG 82 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT-TCEEEEECH
T ss_pred eEEEECCCCcCHHHHHHHHHHHh-CCCEEEEEh
Confidence 68999999999999999999988 456666664
No 286
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.02 E-value=0.018 Score=60.82 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=28.7
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHHhC--CCceEEEECC
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN 100 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll--p~~G~I~lDg 100 (631)
+++|. ++.|.|++|||||||+..++... ++...+.++.
T Consensus 58 l~~G~---iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 58 LPRGR---VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 45677 99999999999999999888665 3334455543
No 287
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.98 E-value=0.0061 Score=62.98 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=29.3
Q ss_pred ceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC-CCceEEEE
Q 006782 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM 98 (631)
Q Consensus 56 Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll-p~~G~I~l 98 (631)
+++..+ +.+++++|++|+||||++..|+..+ +..+.+.+
T Consensus 92 i~~~~~----~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 92 VIPDKI----PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp CSCSSS----SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred cccCCC----CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 666532 4599999999999999999999987 33333433
No 288
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.94 E-value=0.0084 Score=59.91 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=24.9
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhCCC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPS 92 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~llp~ 92 (631)
.++.+|.|.|+.||||||+++.|+..+.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~ 50 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCED 50 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 44569999999999999999999998843
No 289
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.90 E-value=0.015 Score=56.35 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998766
No 290
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.90 E-value=0.023 Score=61.38 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.3
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.++.|+|+|++|+|||||++.|.+..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999999999863
No 291
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.84 E-value=0.011 Score=55.15 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHh
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999875
No 292
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.80 E-value=0.016 Score=56.78 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.3
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
...+.|+|+|++|+|||||++.|.+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345679999999999999999999875
No 293
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.74 E-value=0.021 Score=52.48 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=22.8
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+..+-|+|+|++|+|||||++.+.+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 44567999999999999999999875
No 294
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.74 E-value=0.021 Score=51.04 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
++-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999998865
No 295
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.70 E-value=0.021 Score=51.32 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.4
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+-|+|+|++|+|||||++.+.+..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC
Confidence 34679999999999999999998753
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.02 Score=53.26 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=22.8
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+.|+|+|++|+|||||++.|.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998864
No 297
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.65 E-value=0.021 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.6
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+-|+|+|++|+|||||++.|.+..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC
Confidence 35679999999999999999998753
No 298
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=94.61 E-value=0.014 Score=69.39 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=27.0
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHH
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLl 83 (631)
|+||++.+++++ +|.|+|.||||||||+
T Consensus 36 Lkni~v~iP~~~---lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 36 LRSVDLDLPRDA---LIVFTGLSGSGKSSLA 63 (993)
T ss_dssp CCSEEEEEESSS---EEEEEESTTSSHHHHH
T ss_pred cCceeeeccCCC---EEEEECCCCCcHHHHH
Confidence 899999999999 9999999999999986
No 299
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.60 E-value=0.015 Score=56.78 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=25.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
+|.|+||+||||+|.++.|+..+ +...|+.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-g~~~istGd 33 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-GFVHISTGD 33 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCeEEcHHH
Confidence 57799999999999999999987 344455443
No 300
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=94.59 E-value=0.015 Score=69.17 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=26.9
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHH
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLl 83 (631)
|+||++.+++++ +|.|+|.||||||||+
T Consensus 34 Lkni~v~iP~~~---lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 34 LKNIDVEIPRGK---LVVLTGLSGSGKSSLA 61 (972)
T ss_dssp CCSEEEEEETTS---EEEEEESTTSSHHHHH
T ss_pred CCceeeeccCCc---EEEEECCCCCCHHHHH
Confidence 899999999999 9999999999999986
No 301
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.59 E-value=0.021 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+-|+|+|+.|+|||||++.+.+..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 469999999999999999998753
No 302
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.56 E-value=0.024 Score=61.81 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=24.1
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
++.+|+++|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 303
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.56 E-value=0.024 Score=51.54 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.8
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+.+-|+|+|.+|+|||||++.+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999999876
No 304
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.55 E-value=0.024 Score=50.67 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|+.|+|||||++.+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999875
No 305
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.55 E-value=0.017 Score=59.32 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHh
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
..|+|+|++|+|||||++.|.+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 37999999999999999999986
No 306
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.53 E-value=0.013 Score=61.45 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=26.1
Q ss_pred eeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 50 ~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
..+|+++++.++ .|+|+|++|||||||++.|.+.
T Consensus 24 ~~~l~~i~~~lp------~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP------AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC------EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC------EEEEECCCCCcHHHHHHHHhCC
Confidence 346888888886 5999999999999999999994
No 307
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.44 E-value=0.013 Score=69.56 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=27.1
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHH
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLl 83 (631)
|+||++.+++++ +|.|+|+||||||||+
T Consensus 14 Lkni~~~ip~~~---l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 14 LKNITVRIPKNR---LVVITGVSGSGKSSLA 41 (916)
T ss_dssp CCSBCCEEETTS---EEEEEESTTSSSHHHH
T ss_pred cCcceeccCCCc---EEEEECCCCCcHHHHH
Confidence 899999999999 9999999999999997
No 308
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.44 E-value=0.026 Score=51.36 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.5
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+-|+|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 45679999999999999999998753
No 309
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.43 E-value=0.026 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999875
No 310
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.40 E-value=0.026 Score=52.38 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.5
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+.+-|+|+|..|+|||||++.|.+.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 34467999999999999999999875
No 311
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.38 E-value=0.026 Score=51.37 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.4
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+-|+|+|++|+|||||++.+.+..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 34679999999999999999998753
No 312
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.37 E-value=0.027 Score=50.74 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=22.1
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
..+-|+|+|++|+|||||++.+.+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999875
No 313
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.36 E-value=0.02 Score=57.49 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.|+|+|++|||||||++.|.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998864
No 314
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.34 E-value=0.015 Score=57.98 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=20.8
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
|..+++.-....+..+|.|.|++||||||+++.|+..+
T Consensus 12 ~~~~~~~~~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 12 LEAQTQGPGSMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -----------CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred HHHHHhcCccccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444433322334589999999999999999999887
No 315
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.33 E-value=0.032 Score=51.47 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=22.8
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+-|+|+|+.|+|||||++.|.+..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 35679999999999999999999863
No 316
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.33 E-value=0.029 Score=50.12 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.-|+|+|+.|+|||||++.+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998763
No 317
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.30 E-value=0.034 Score=58.75 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=25.9
Q ss_pred EeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 53 L~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+++..+...+| +..|+|+|||||||++.+|.-.+
T Consensus 16 ~~~~~i~f~~g----l~vi~G~NGaGKT~ileAI~~~l 49 (371)
T 3auy_A 16 HVNSRIKFEKG----IVAIIGENGSGKSSIFEAVFFAL 49 (371)
T ss_dssp EEEEEEECCSE----EEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccceEEecCCC----eEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555442 79999999999999999998643
No 318
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.30 E-value=0.028 Score=50.48 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+-|+|+|+.|+|||||++.+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998753
No 319
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.29 E-value=0.027 Score=50.67 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|+.|+|||||++.+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999874
No 320
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.29 E-value=0.03 Score=55.19 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=30.3
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
.+++.-+.+. |. .|.|+||+|||||||+..|+.... ..|.-|.
T Consensus 24 ~lHa~~v~~~-g~---~ilI~GpsGsGKStLA~~La~~g~--~iIsdDs 66 (205)
T 2qmh_A 24 SMHGVLVDIY-GL---GVLITGDSGVGKSETALELVQRGH--RLIADDR 66 (205)
T ss_dssp CEESEEEEET-TE---EEEEECCCTTTTHHHHHHHHTTTC--EEEESSE
T ss_pred eeeEEEEEEC-CE---EEEEECCCCCCHHHHHHHHHHhCC--eEEecch
Confidence 4556544443 33 699999999999999999998752 3444443
No 321
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.28 E-value=0.028 Score=50.51 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+-|+|+|+.|+|||||++.+.+..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4569999999999999999998764
No 322
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.23 E-value=0.032 Score=51.93 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=22.8
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+..+-|+|+|++|+|||||++.|.+.-
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 334579999999999999999998753
No 323
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.23 E-value=0.025 Score=51.56 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.8
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+++.|+|+|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999875
No 324
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.21 E-value=0.036 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=21.8
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999764
No 325
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.15 E-value=0.028 Score=50.97 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|++|+|||||++.+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456999999999999999999865
No 326
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.14 E-value=0.035 Score=50.51 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.0
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4567999999999999999999864
No 327
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.12 E-value=0.043 Score=57.67 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=28.7
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHHhC----CCceEEEEC
Q 006782 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMD 99 (631)
Q Consensus 63 gekp~IIGI~GpsGSGKSTLlr~L~~ll----p~~G~I~lD 99 (631)
..+..+|+|+|+.|+|||||+..|+..+ ...+.+..|
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 3456799999999999999999998875 234555554
No 328
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.11 E-value=0.03 Score=50.39 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=21.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
++-|+|+|++|+|||||++.+.+.-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3569999999999999999998753
No 329
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.09 E-value=0.032 Score=50.02 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|+.|+|||||++.+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456999999999999999999874
No 330
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.08 E-value=0.029 Score=53.64 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=22.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
...|+|+|.+|+|||||++.|.+.+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 331
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.03 E-value=0.029 Score=65.63 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=29.4
Q ss_pred EeccCCccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 59 ~i~~gekp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
.+.++. .|.|.||+|+|||||+++|++.+ ....+.+++
T Consensus 234 ~i~~~~---~vLL~Gp~GtGKTtLarala~~l-~~~~i~v~~ 271 (806)
T 1ypw_A 234 GVKPPR---GILLYGPPGTGKTLIARAVANET-GAFFFLING 271 (806)
T ss_dssp CCCCCC---EEEECSCTTSSHHHHHHHHHHTT-TCEEEEEEH
T ss_pred CCCCCC---eEEEECcCCCCHHHHHHHHHHHc-CCcEEEEEc
Confidence 344555 69999999999999999999998 233455554
No 332
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.01 E-value=0.029 Score=55.75 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=24.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.++.+|.|.|++||||||+++.|...+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999887
No 333
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.98 E-value=0.022 Score=64.17 Aligned_cols=41 Identities=10% Similarity=0.047 Sum_probs=31.3
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHHhCCC---ceEEEECCcc
Q 006782 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPS---IAVITMDNYN 102 (631)
Q Consensus 62 ~gekp~IIGI~GpsGSGKSTLlr~L~~llp~---~G~I~lDg~~ 102 (631)
.+.++.+|.|+|.+||||||+++.|+..+.. ...+.+|+..
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 3556689999999999999999999998732 2356666543
No 334
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.94 E-value=0.027 Score=52.28 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=22.1
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+.+.|+|+|++|+|||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999875
No 335
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.94 E-value=0.036 Score=58.80 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+|+|+|++|||||||++.|.+..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 369999999999999999999864
No 336
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.93 E-value=0.036 Score=51.53 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.6
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
...+-|+|+|++|+|||||++.|.+.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 34567999999999999999999874
No 337
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.91 E-value=0.03 Score=54.95 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=22.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+|.|.|++||||||+++.|...+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999887
No 338
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.91 E-value=0.041 Score=50.14 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=23.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
++.+-|+|+|++|+|||||++.+.+..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC
Confidence 345679999999999999999998753
No 339
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.87 E-value=0.042 Score=49.81 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+..+-|+|+|..|+|||||++.+.+..
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 345679999999999999999998753
No 340
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=93.86 E-value=0.034 Score=59.88 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.|||+|++|+|||||+++|.+.
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999986
No 341
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.80 E-value=0.041 Score=50.26 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|+.|+|||||++.|.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 457999999999999999999875
No 342
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.78 E-value=0.037 Score=52.66 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.3
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+.+.|+|+|++|+|||||++.|.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344679999999999999999999864
No 343
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.76 E-value=0.036 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHh
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999754
No 344
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.73 E-value=0.045 Score=62.31 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=31.2
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhCC--CceEEEECCcc
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYN 102 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~llp--~~G~I~lDg~~ 102 (631)
++.+|.|+|.+||||||+++.|+..+. +...+.+|+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 567999999999999999999999872 44577787654
No 345
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.71 E-value=0.043 Score=50.04 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
..+-|+|+|+.|+|||||++.+.+.
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999875
No 346
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.67 E-value=0.048 Score=50.29 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=23.4
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+..+-|+|+|.+|+|||||++.+.+..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 334679999999999999999998876
No 347
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.66 E-value=0.028 Score=56.26 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+|.|.|++||||||+++.|...+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999999887
No 348
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.65 E-value=0.038 Score=50.13 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|+.|+|||||++.+.+.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 349
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.65 E-value=0.05 Score=54.84 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+.|.||+|+||||++++|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 379999999999999999999987
No 350
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.65 E-value=0.039 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+.|.||+|+|||||+++|+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999876
No 351
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.64 E-value=0.048 Score=50.51 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.++-|+|+|++|+|||||++.|.+..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCC
Confidence 345679999999999999999998753
No 352
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.64 E-value=0.048 Score=50.65 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=22.9
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+..+-|+|+|+.|+|||||++.+.+.-
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 345679999999999999999998753
No 353
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.62 E-value=0.049 Score=59.54 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=24.1
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+|.+|+++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 354
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.62 E-value=0.051 Score=49.86 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.4
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+.+-|+|+|++|+|||||++.+.+.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999999865
No 355
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.62 E-value=0.046 Score=51.27 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.6
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+-|+|+|+.|+|||||++.|.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45679999999999999999998763
No 356
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.61 E-value=0.041 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+.|.||+|+||||+++.++..+
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 357
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.61 E-value=0.064 Score=56.07 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=30.9
Q ss_pred CceeEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 48 g~~~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.....+++..+.+ .|. -|.|.|+||+||||++..|.+.
T Consensus 130 ~~~~~~H~~~v~~-~g~---~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 130 ARTTSLHGVLVDV-YGV---GVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp CEEEEEESEEEEE-TTE---EEEEEESTTSSHHHHHHHHHHT
T ss_pred ccceeeeEEEEEE-CCE---EEEEEeCCCCCHHHHHHHHHhc
Confidence 3456788887777 344 5999999999999999999885
No 358
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.60 E-value=0.054 Score=54.46 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+.|.||+|+||||+++++++.+
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 68999999999999999999987
No 359
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.60 E-value=0.034 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+.|+|+|++|+|||||++.|.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999876
No 360
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.59 E-value=0.044 Score=49.79 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.5
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
..+-|+|+|++|+|||||++.|.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999998754
No 361
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.57 E-value=0.028 Score=60.76 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=30.4
Q ss_pred eceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 55 ~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
++.+.+.+|+ .++|+||+|+|||||++.|+...
T Consensus 166 D~~~pi~rGQ---r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQ---RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTC---EEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCc---EEEEecCCCCChhHHHHHHHHHH
Confidence 7889999999 69999999999999999998874
No 362
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=93.56 E-value=0.013 Score=64.84 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=30.1
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.++++++.+.+| +.+|+|+||||||||+.+|..++
T Consensus 50 ~~~~~~l~f~~g----~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGGG----FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCCS----EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC----eEEEEcCCCCCHHHHHHHHHHHh
Confidence 467788777654 69999999999999999999887
No 363
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.54 E-value=0.047 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999865
No 364
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.53 E-value=0.049 Score=50.61 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+.+-|+|+|.+|+|||||++.+.+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999864
No 365
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.52 E-value=0.065 Score=55.47 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=24.5
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+++|. ++.|.|++|+|||||+..++...
T Consensus 104 l~~G~---i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRT---MTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCc---EEEEECCCCCCHhHHHHHHHHHH
Confidence 45667 89999999999999999998764
No 366
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.50 E-value=0.051 Score=52.44 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=26.5
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
..+++.-+.+... -|.|.|+||+||||++..|...
T Consensus 5 ~~lHas~v~v~G~----gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 5 QTWHANFLVIDKM----GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEESEEEEETTE----EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEEEECCE----EEEEEcCCCCCHHHHHHHHHHc
Confidence 3456655555433 4999999999999999988875
No 367
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.50 E-value=0.037 Score=54.71 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.2
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+.+.|+|+|.+|+|||||++.|.+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 44567999999999999999999875
No 368
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.49 E-value=0.035 Score=52.41 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=23.8
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 62 ~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+..+..+.|.||+|+||||+++.++..+
T Consensus 41 ~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 41 LGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34333478999999999999999998876
No 369
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.47 E-value=0.048 Score=50.09 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.3
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+-|+|+|+.|+|||||++.+.+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34679999999999999999998753
No 370
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.47 E-value=0.042 Score=52.51 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+.|.||+|+||||+++.++..+
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999876
No 371
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.39 E-value=0.046 Score=57.84 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
-++|+|++||||||+++.|...+
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998876
No 372
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.36 E-value=0.057 Score=50.33 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.3
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+-|+|+|+.|+|||||++.+.+.-
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34569999999999999999998753
No 373
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.35 E-value=0.044 Score=50.21 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 467999999999999999999854
No 374
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.35 E-value=0.056 Score=55.88 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+.|.||+|+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999987
No 375
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.33 E-value=0.034 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHH
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLN 88 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ 88 (631)
.+.+-|+|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999987753
No 376
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.33 E-value=0.047 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=22.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
...|+|+|.+|+|||||++.+....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998764
No 377
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.30 E-value=0.062 Score=50.22 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.3
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999877764
No 378
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.049 Score=50.94 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.4
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+-|+|+|+.|+|||||++.+.+..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34679999999999999999998753
No 379
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.26 E-value=0.054 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=21.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|++|+|||||++.+.+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 380
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.26 E-value=0.048 Score=54.20 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.1
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
...+-|+|+|.+|+|||||++.|.+.-
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCC
Confidence 445679999999999999999998864
No 381
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.25 E-value=0.037 Score=56.83 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=26.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC-C----CceEEEEC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMD 99 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll-p----~~G~I~lD 99 (631)
+..+.|.||+|+|||||++.+++.+ + ....+.++
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3379999999999999999999876 2 34455554
No 382
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.23 E-value=0.049 Score=48.85 Aligned_cols=22 Identities=27% Similarity=0.152 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~l 89 (631)
-|+|+|++|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999765
No 383
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.20 E-value=0.057 Score=50.39 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=23.2
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 63 gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+.+-|+|+|.+|+|||||++.+.+..
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3445679999999999999999998753
No 384
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.09 E-value=0.06 Score=50.61 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=22.3
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
++.+-|+|+|+.|+|||||++.+.+..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 445679999999999999999998753
No 385
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.07 E-value=0.055 Score=50.29 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.8
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+.+.|+|+|++|+|||||++.+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998764
No 386
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.03 E-value=0.059 Score=54.14 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=22.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+|||+|+.||||||+++.|...+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~ 25 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999865
No 387
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.02 E-value=0.049 Score=50.24 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.7
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+.+-|+|+|++|+|||||++.+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999988754
No 388
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.02 E-value=0.057 Score=50.02 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|++|+|||||++.+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999875
No 389
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.02 E-value=0.061 Score=49.68 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+-|+|+|+.|+|||||++.|.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3569999999999999999998753
No 390
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.01 E-value=0.047 Score=49.06 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHh
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 45899999999999999998654
No 391
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.01 E-value=0.086 Score=55.17 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.6
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+++|. ++.|.|++|||||||+..++..
T Consensus 119 l~~G~---i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMA---ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSE---EEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCe---EEEEECCCCCCHHHHHHHHHHH
Confidence 44555 8999999999999999999886
No 392
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.00 E-value=0.04 Score=50.74 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~l 89 (631)
-|+|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999875
No 393
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.96 E-value=0.058 Score=50.02 Aligned_cols=26 Identities=27% Similarity=0.146 Sum_probs=22.3
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+.+-|+|+|..|+|||||++.+.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999854
No 394
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.94 E-value=0.052 Score=55.15 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+.|+|+|++|+|||||++.|.+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999999875
No 395
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.92 E-value=0.059 Score=50.76 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=22.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+-|+|+|.+|+|||||++.+.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4569999999999999999998763
No 396
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.91 E-value=0.062 Score=49.02 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|++|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999875
No 397
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.89 E-value=0.045 Score=53.81 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=22.5
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+|.|.|++||||||+++.|...+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999999987
No 398
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.88 E-value=0.07 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.1
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+.+-|+|+|.+|+|||||++.+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999875
No 399
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.84 E-value=0.072 Score=49.60 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|+.|+|||||++.+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456999999999999999999875
No 400
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.83 E-value=0.048 Score=50.42 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=21.6
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+.+-|+|+|..|+|||||++.+.+.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999875
No 401
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.82 E-value=0.072 Score=49.73 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=21.8
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+.+-|+|+|.+|+|||||++.+.+.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 33467999999999999999988865
No 402
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.78 E-value=0.054 Score=51.22 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=21.0
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHH
Q 006782 63 NHGIILVGVAGPSGAGKTVFTEKVLN 88 (631)
Q Consensus 63 gekp~IIGI~GpsGSGKSTLlr~L~~ 88 (631)
....+-|+|+|.+|+|||||++.+.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHh
Confidence 34456799999999999999998854
No 403
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.78 E-value=0.047 Score=49.84 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+.|.||+|+||||+++.++..+
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 404
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.75 E-value=0.062 Score=50.93 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=21.6
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.+.|+|+|++|+|||||++.+.+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999998753
No 405
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.71 E-value=0.086 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
-+.|.||+|+||||++++++..+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 58899999999999999999987
No 406
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.67 E-value=0.052 Score=50.43 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=21.6
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.....|+|+|.+|+|||||++.+.+.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 44567999999999999999988764
No 407
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.66 E-value=0.073 Score=50.13 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.4
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+-|+|+|++|+|||||++.|.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34679999999999999999998753
No 408
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.63 E-value=0.052 Score=55.41 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.6
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..|..+.|.||+|+|||+|+++|+..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345578899999999999999999987
No 409
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.61 E-value=0.079 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
-+.|.||+|+||||++++++..+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 410
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.61 E-value=0.076 Score=49.96 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|++|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999865
No 411
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.59 E-value=0.073 Score=50.80 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.2
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+-|+|+|++|+|||||++.+.+..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34569999999999999999988753
No 412
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=92.58 E-value=0.091 Score=55.96 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.|||+|.+|+|||||+++|.+.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999984
No 413
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.55 E-value=0.064 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999875
No 414
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.50 E-value=0.072 Score=49.94 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|+.|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999865
No 415
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.49 E-value=0.053 Score=53.48 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=23.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMP 91 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp 91 (631)
.+|.|.|++||||||+++.|...+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3899999999999999999999984
No 416
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.49 E-value=0.063 Score=54.22 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
++.|+|+|.+|+|||||++.|.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999875
No 417
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.41 E-value=0.089 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999864
No 418
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.37 E-value=0.049 Score=57.14 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.7
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
++..|+|+|++|+|||||++.|.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 419
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.35 E-value=0.066 Score=51.76 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.5
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+.+.|+|+|++|+|||||++.|.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999998765
No 420
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.31 E-value=0.068 Score=50.48 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.0
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
..+-|+|+|++|+|||||++.+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456999999999999999998754
No 421
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.30 E-value=0.07 Score=51.03 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=21.8
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+.+-|+|+|.+|+|||||++.+.+.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcC
Confidence 34567999999999999999999754
No 422
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.29 E-value=0.079 Score=49.34 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+-|+|+|+.|+|||||++.+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3569999999999999999998764
No 423
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.27 E-value=0.083 Score=50.16 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=22.6
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+..+-|+|+|+.|+|||||++.|.+..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 334569999999999999999998653
No 424
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.26 E-value=0.088 Score=49.26 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=20.8
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
..+-|+|+|.+|+|||||++.|.+.
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999998653
No 425
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.26 E-value=0.037 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+.|+|+|.+|+|||||++.|.+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
No 426
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.23 E-value=0.079 Score=52.86 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.3
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+.+.|+|+|.+|+|||||++.|.+.-
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998753
No 427
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.18 E-value=0.077 Score=53.21 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+.|+|+|.+|+|||||++.|.+.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999875
No 428
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.11 E-value=0.078 Score=53.08 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.2
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 63 gekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+.+.+.|+|+|.+|+|||||++.|.+.
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 344568999999999999999999875
No 429
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.10 E-value=0.09 Score=51.64 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=25.3
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 62 ~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.|.++.++.+.|..|+||||++..|+..+
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46677899999999999999999998654
No 430
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.08 E-value=0.086 Score=47.76 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
-|.|.|++|+|||++++.|....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999999875
No 431
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.06 E-value=0.031 Score=57.20 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=27.9
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+++.+...+..+..+. +.|.||+|+||||+++++++.+
T Consensus 45 ~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp THHHHHHHTTCTTCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCE-EEEECCCCCCHHHHHHHHHHHh
Confidence 3444444455553233 8899999999999999999886
No 432
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.03 E-value=0.051 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=20.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+.+-|+|+|..|+|||||++.+.+.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999988654
No 433
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.03 E-value=0.088 Score=49.88 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=21.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
++-|+|+|.+|+|||||++.+.+.-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998753
No 434
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.00 E-value=0.089 Score=50.26 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=22.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+-|+|+|++|+|||||++.+.+..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999998863
No 435
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.97 E-value=0.068 Score=53.61 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.|+|+|.+|+|||||++.|.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999876
No 436
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.95 E-value=0.066 Score=49.12 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=10.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|++|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999988754
No 437
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=91.95 E-value=0.064 Score=57.11 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.|||+|++|+|||||+++|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999886
No 438
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.93 E-value=0.088 Score=49.26 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=20.7
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+.+-|+|+|+.|+|||||++.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999998754
No 439
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.90 E-value=0.076 Score=51.25 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+|.|=|+.||||||.++.|+..+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999987
No 440
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.89 E-value=0.09 Score=54.05 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+-.|+|+|.+|+|||||++.|.+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 347999999999999999999875
No 441
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.89 E-value=0.071 Score=50.05 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=22.0
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 62 ~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
++++.+-|.|+|.+|+|||||++.+.+.+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 34445679999999999999999887754
No 442
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.88 E-value=0.071 Score=59.30 Aligned_cols=27 Identities=4% Similarity=-0.011 Sum_probs=24.3
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhCC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFMP 91 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~llp 91 (631)
...+|.|+|.+||||||++++|+..+.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999983
No 443
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.88 E-value=0.13 Score=57.02 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=27.1
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC----CCceEEEECC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDN 100 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll----p~~G~I~lDg 100 (631)
.++.+|+|+|++|+||||++..|+..+ .....|..|-
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 456799999999999999999999665 1344555543
No 444
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.84 E-value=0.079 Score=53.39 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.5
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.-+.|.||+|+||||+++.++..+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998876
No 445
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.81 E-value=0.097 Score=49.15 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.4
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHH
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLN 88 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ 88 (631)
.+.+-|+|+|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999998864
No 446
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.81 E-value=0.1 Score=49.38 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|..|+|||||++.+.+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 456999999999999999999865
No 447
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.78 E-value=0.094 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHHhC
Q 006782 69 VGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 69 IGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.|.||.|+||||+++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999998875
No 448
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.77 E-value=0.085 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+.|.||+|+|||||++.|+..+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999999999876
No 449
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.74 E-value=0.098 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|+.|+|||||++.+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999875
No 450
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.72 E-value=0.081 Score=51.75 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=20.8
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHH
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~ 88 (631)
+..|+ .+.|.||+||||||++..+..
T Consensus 73 i~~g~---~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNS---VVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCS---EEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCC---EEEEEeCCCCCcHHhHHHHHh
Confidence 34566 799999999999998876643
No 451
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.68 E-value=0.1 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=21.0
Q ss_pred EEEEEECCCCCcHHHHHHHHHHh
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
..|+|+|.+|+|||||++.|.+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999875
No 452
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.67 E-value=0.14 Score=52.96 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=25.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
-|.|.||+|+|||+|+++++..+.....+.++.
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~ 79 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTSCEEEEEEC
T ss_pred eEEEECCCCccHHHHHHHHHHHcCCCcEEEEEh
Confidence 588999999999999999999873344444443
No 453
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.65 E-value=0.1 Score=49.20 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=21.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+-|+|+|..|+|||||++.+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3469999999999999999998753
No 454
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.65 E-value=0.059 Score=58.51 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=31.9
Q ss_pred eEEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 51 ~vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..|+.+..-+++|+ ++.|+|++|+|||||+..++...
T Consensus 191 ~~LD~~~gGl~~G~---liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 191 TELDRMTSGFQRSD---LIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHHSSBCTTC---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 34677776688888 99999999999999999998876
No 455
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.65 E-value=0.06 Score=56.87 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
-|+|+|++|+|||||++.|.+..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 47999999999999999987653
No 456
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.62 E-value=0.089 Score=58.46 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=28.6
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC--C--CceEEEECCc
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM--P--SIAVITMDNY 101 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll--p--~~G~I~lDg~ 101 (631)
.+.+|.++|.+||||||+++.|+..+ + +.-.++.|.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 35689999999999999999998876 2 3344666654
No 457
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.59 E-value=0.063 Score=58.37 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.4
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
++.+|+|+|++|+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999986
No 458
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.58 E-value=0.077 Score=51.12 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHHh
Q 006782 69 VGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 69 IGI~GpsGSGKSTLlr~L~~l 89 (631)
+.|+|++||||||++..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998854
No 459
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.54 E-value=0.11 Score=49.36 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.4
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+.+-|+|+|.+|+|||||++.+.+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3467999999999999999999864
No 460
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.50 E-value=0.085 Score=53.49 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=21.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHh
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
..|+|+|..|||||||++.|.+.
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTS
T ss_pred CeEEEEcCCCCCHHHHHHHHHCC
Confidence 36999999999999999999986
No 461
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.48 E-value=0.14 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
-+.|.||+|+||||++++|+..+
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999987
No 462
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=91.40 E-value=0.1 Score=52.49 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|.+|+|||||++.|.+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999987654
No 463
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.35 E-value=0.14 Score=50.95 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+.-+.|.||+|+||||++++++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34578899999999999999999876
No 464
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=91.06 E-value=0.14 Score=54.87 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=24.5
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhCCCceEEEE
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITM 98 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~l 98 (631)
+..+|.|-|+.||||||+++.|+..+...|.+..
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv~t 81 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYV 81 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC----CCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhCCEEEE
Confidence 3468999999999999999999998743444443
No 465
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=91.04 E-value=0.11 Score=54.55 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=23.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEE
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVIT 97 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~ 97 (631)
..+|.|-|+-||||||+++.|+..+...|.+.
T Consensus 4 ~~fI~~EG~dGsGKTT~~~~La~~L~~~gv~~ 35 (331)
T 1e2k_A 4 LLRVYIDGPHGMGKTTTTQLLVALGSRDDIVY 35 (331)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC----CCEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhCCEEE
Confidence 35899999999999999999998874334443
No 466
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=91.03 E-value=0.11 Score=54.75 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=23.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+|.|-|+-||||||+++.|+..+
T Consensus 7 ~~fI~~EG~dGaGKTT~~~~La~~L 31 (334)
T 1p6x_A 7 IVRIYLDGVYGIGKSTTGRVMASAA 31 (334)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999988
No 467
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.99 E-value=0.14 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
-+.|.||+|+||||+++.++..+
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 468
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=90.98 E-value=0.093 Score=60.01 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=22.0
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..|+|+|++|+|||||++.|.+..
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCChHHHHHHHHHHhc
Confidence 379999999999999999999765
No 469
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.93 E-value=0.14 Score=55.87 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=23.2
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.++.+|.++|.+||||||+++.|+..+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999875
No 470
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.93 E-value=0.17 Score=53.48 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=28.9
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHHhC--CCceEEEECC
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN 100 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll--p~~G~I~lDg 100 (631)
+++|. ++.|.|++|+|||||+..++... .+...+.++.
T Consensus 60 l~~G~---ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGR---IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTS---EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45667 89999999999999999888764 3334555554
No 471
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.88 E-value=0.065 Score=53.04 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHhC
Q 006782 69 VGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 69 IGI~GpsGSGKSTLlr~L~~ll 90 (631)
+.|.||+|+||||++++|+..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7789999999999999999876
No 472
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.87 E-value=0.059 Score=50.31 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=5.0
Q ss_pred EEEEEECCCCCcHHHHHHHHHHh
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+-|+|+|++|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999988765
No 473
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=90.87 E-value=0.056 Score=51.40 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=21.3
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
...+-|+|+|.+|+|||||++.|.+.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTC
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999987753
No 474
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.87 E-value=0.14 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999865
No 475
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.86 E-value=0.15 Score=48.84 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+-|+|+|++|+|||||++.|.+.-
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4569999999999999999998753
No 476
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.86 E-value=0.093 Score=48.57 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=20.9
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHH
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLN 88 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ 88 (631)
.+.+-|+|+|++|+|||||++.+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 3456799999999999999998743
No 477
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.81 E-value=0.16 Score=48.97 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=21.8
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHH
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~ 88 (631)
+++|. ++.|.|++|+|||||+-.++-
T Consensus 27 l~~G~---l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 27 FPEGT---TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTC---EEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCe---EEEEEeCCCCCHHHHHHHHHH
Confidence 45677 899999999999999977653
No 478
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.73 E-value=0.18 Score=51.59 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=22.0
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+.|.||+|+||||+++.++..+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 358899999999999999999987
No 479
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.66 E-value=0.11 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+.|.||+|+||||+++.++..+
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999876
No 480
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=90.61 E-value=0.15 Score=56.76 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=24.5
Q ss_pred ceeEeccCCccEEEEEECCCCCcHHHHHHHHHH
Q 006782 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (631)
Q Consensus 56 Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ 88 (631)
+.+.+.++. .+.|+|.+||||||+++.|..
T Consensus 160 v~ldL~~~p---HlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 160 VVADLAKMP---HLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEGGGSC---SEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcccCc---eEEEECCCCCCHHHHHHHHHH
Confidence 455566655 599999999999999999875
No 481
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=90.54 E-value=0.11 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..|+|+|.+|+|||||++.|.+.-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 469999999999999999999863
No 482
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.53 E-value=0.17 Score=48.47 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=21.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|.|+|.+|+|||||++.+.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999999875
No 483
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.47 E-value=0.13 Score=56.56 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHhC
Q 006782 69 VGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 69 IGI~GpsGSGKSTLlr~L~~ll 90 (631)
|.|.||+|+|||||+++|++..
T Consensus 52 vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999986
No 484
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.33 E-value=0.14 Score=55.52 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
+..+.|.||+|+|||||+++|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3368899999999999999999876
No 485
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.27 E-value=0.22 Score=52.04 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=25.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHhCCCceEEEEC
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lD 99 (631)
+.-|.|.||+|+||||++++|+..+ ....+.++
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~-~~~~~~i~ 149 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS-GATFFSIS 149 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT-TCEEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc-CCeEEEEe
Confidence 3468999999999999999999987 33344443
No 486
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.26 E-value=0.17 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHh
Q 006782 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999998853
No 487
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.21 E-value=0.21 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+.|.||+|+||||+++.|+..+
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999988
No 488
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.15 E-value=0.16 Score=52.44 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.7
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.+..+.|.||+|+||||+++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34479999999999999999999875
No 489
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.06 E-value=0.22 Score=54.15 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=26.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
=|.+.||+|+|||++++++++.+ +...+.+++.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~-~~~~~~v~~~ 240 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANST-KAAFIRVNGS 240 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHH-TCEEEEEEGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCeEEEecc
Confidence 48899999999999999999987 4455555543
No 490
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.02 E-value=0.21 Score=54.50 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=25.7
Q ss_pred EEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 69 VGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 69 IGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
|.+.||+|+||||++++|+..+ +...+.++.
T Consensus 53 iLl~GppGtGKT~lar~lA~~l-~~~~~~v~~ 83 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLA-NAPFIKVEA 83 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT-TCCEEEEEG
T ss_pred EEEEcCCCCCHHHHHHHHHHHc-CCCceeecc
Confidence 8899999999999999999998 334555554
No 491
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.98 E-value=0.25 Score=48.85 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
-|.|.|++|+|||++++.|+...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTS
T ss_pred CEEEECCCCCcHHHHHHHHHHhc
Confidence 47799999999999999999987
No 492
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.78 E-value=0.28 Score=53.13 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=26.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHhCCCceEEEECC
Q 006782 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (631)
Q Consensus 67 ~IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg 100 (631)
.-|.|.||+|+|||+|+++|+..+.....+.++.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 3688999999999999999999873344555543
No 493
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=89.71 E-value=0.17 Score=53.46 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.4
Q ss_pred cEEEEEECCCCCcHHHHH-HHHHHhCCCce
Q 006782 66 IILVGVAGPSGAGKTVFT-EKVLNFMPSIA 94 (631)
Q Consensus 66 p~IIGI~GpsGSGKSTLl-r~L~~llp~~G 94 (631)
..+|.|-|+-||||||++ +.|+..++..|
T Consensus 12 ~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g 41 (341)
T 1osn_A 12 VLRIYLDGAYGIGKTTAAEEFLHHFAITPN 41 (341)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHTTTTSGG
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhhCC
Confidence 468999999999999999 99999985444
No 494
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.60 E-value=0.17 Score=51.91 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.3
Q ss_pred eccCCccEEEEEECCCCCcHHHHHHHHHHh
Q 006782 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (631)
Q Consensus 60 i~~gekp~IIGI~GpsGSGKSTLlr~L~~l 89 (631)
+++|. ++.|.|++|+|||||+..++..
T Consensus 95 l~~g~---i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQS---VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTE---EEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHH
Confidence 45566 8999999999999999998864
No 495
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.58 E-value=0.22 Score=51.17 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=24.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEEC
Q 006782 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (631)
Q Consensus 68 IIGI~GpsGSGKSTLlr~L~~llp~~G~I~lD 99 (631)
-+.|.||+|+|||+++++++..+ ....+.++
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~-~~~~~~v~ 83 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEA-NSTFFSVS 83 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH-TCEEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHH-CCCEEEEc
Confidence 58899999999999999999986 33344443
No 496
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.49 E-value=0.2 Score=54.41 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=24.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 64 ekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.++.+|+++|++|+||||++-.|+..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999776
No 497
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.38 E-value=0.23 Score=51.28 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=28.9
Q ss_pred EEeeceeEeccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 52 vL~~Isl~i~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
.|+.+.--+.+|+ ++.|.|++|+|||||+..++...
T Consensus 57 ~LD~~lgGl~~G~---l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 57 ELDRMTYGYKRRN---FVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHHSSBCTTC---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 3555554477888 99999999999999999888654
No 498
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.29 E-value=0.27 Score=53.09 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=26.5
Q ss_pred EEEECCCCCcHHHHHHHHHHhCCCceEEEECCc
Q 006782 69 VGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (631)
Q Consensus 69 IGI~GpsGSGKSTLlr~L~~llp~~G~I~lDg~ 101 (631)
|.+.||+|+|||+|++++++.. +...+.+++-
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~-~~~f~~v~~s 216 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHT-DCKFIRVSGA 216 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH-TCEEEEEEGG
T ss_pred eEEeCCCCCCHHHHHHHHHHhh-CCCceEEEhH
Confidence 8899999999999999999987 4455666543
No 499
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.25 E-value=0.25 Score=50.23 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=24.9
Q ss_pred ccCCccEEEEEECCCCCcHHHHHHHHHHhC
Q 006782 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (631)
Q Consensus 61 ~~gekp~IIGI~GpsGSGKSTLlr~L~~ll 90 (631)
..+..+.++.+.||+|+||||++++++..+
T Consensus 43 ~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 43 SKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 345555578888999999999999999987
No 500
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=89.23 E-value=0.18 Score=48.02 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=20.8
Q ss_pred ccEEEEEECCCCCcHHHHHHH-HHHh
Q 006782 65 GIILVGVAGPSGAGKTVFTEK-VLNF 89 (631)
Q Consensus 65 kp~IIGI~GpsGSGKSTLlr~-L~~l 89 (631)
..+-|+|+|.+|+|||||++. +.+.
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 346799999999999999998 5444
Done!