Query 006783
Match_columns 631
No_of_seqs 270 out of 1353
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 14:26:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14725 pyruvate kinase; Prov 100.0 8E-162 2E-166 1333.6 59.6 575 36-625 12-608 (608)
2 PRK08187 pyruvate kinase; Vali 100.0 2E-133 4E-138 1099.0 52.6 480 36-627 5-493 (493)
3 PF00224 PK: Pyruvate kinase, 100.0 5.6E-96 1E-100 777.9 32.7 332 168-615 1-341 (348)
4 PLN02762 pyruvate kinase compl 100.0 4.8E-94 1E-98 788.4 39.9 330 168-615 24-370 (509)
5 PRK06739 pyruvate kinase; Vali 100.0 6.4E-94 1.4E-98 759.4 37.9 324 170-617 2-333 (352)
6 PRK09206 pyruvate kinase; Prov 100.0 1.1E-93 2.4E-98 781.5 39.2 330 168-615 1-338 (470)
7 PLN02461 Probable pyruvate kin 100.0 2.1E-93 4.6E-98 783.6 39.7 331 166-615 18-359 (511)
8 PTZ00066 pyruvate kinase; Prov 100.0 3.7E-93 7.9E-98 781.3 38.9 330 167-615 36-375 (513)
9 COG0469 PykF Pyruvate kinase [ 100.0 1.3E-92 2.7E-97 769.8 38.1 334 166-617 2-343 (477)
10 PRK06247 pyruvate kinase; Prov 100.0 4.1E-92 9E-97 768.8 38.2 325 167-615 3-335 (476)
11 PLN02765 pyruvate kinase 100.0 1.5E-91 3.2E-96 769.6 39.3 327 169-615 28-372 (526)
12 cd00288 Pyruvate_Kinase Pyruva 100.0 4.9E-91 1.1E-95 764.1 38.8 329 169-615 2-339 (480)
13 PRK06354 pyruvate kinase; Prov 100.0 8.1E-91 1.7E-95 777.4 39.1 330 166-615 5-344 (590)
14 PRK05826 pyruvate kinase; Prov 100.0 3.2E-89 6.9E-94 747.4 39.0 330 167-615 2-339 (465)
15 PLN02623 pyruvate kinase 100.0 1.8E-88 3.8E-93 750.4 39.6 348 146-615 87-443 (581)
16 PTZ00300 pyruvate kinase; Prov 100.0 2.3E-83 5.1E-88 697.9 34.8 304 194-615 1-312 (454)
17 TIGR01064 pyruv_kin pyruvate k 100.0 5.8E-83 1.3E-87 701.5 38.0 329 169-615 1-337 (473)
18 KOG2323 Pyruvate kinase [Carbo 100.0 4.2E-77 9.1E-82 645.6 30.8 333 164-614 16-358 (501)
19 TIGR03239 GarL 2-dehydro-3-deo 99.4 5.9E-13 1.3E-17 136.7 11.0 108 447-559 68-208 (249)
20 PRK10558 alpha-dehydro-beta-de 99.4 5.5E-13 1.2E-17 137.4 10.8 109 446-559 74-215 (256)
21 PRK10128 2-keto-3-deoxy-L-rham 99.3 5.4E-12 1.2E-16 130.9 10.7 106 450-559 77-215 (267)
22 COG3836 HpcH 2,4-dihydroxyhept 99.3 6E-12 1.3E-16 126.9 10.6 110 445-559 71-214 (255)
23 TIGR02311 HpaI 2,4-dihydroxyhe 99.3 1.4E-11 3.1E-16 126.4 9.8 127 451-593 72-231 (249)
24 PF03328 HpcH_HpaI: HpcH/HpaI 99.3 7.3E-12 1.6E-16 125.5 6.8 102 453-559 75-189 (221)
25 TIGR01588 citE citrate lyase, 98.9 5.3E-09 1.2E-13 109.6 10.0 105 451-558 73-190 (288)
26 PRK06464 phosphoenolpyruvate s 98.8 2.5E-08 5.3E-13 117.5 12.3 129 451-593 621-773 (795)
27 TIGR01418 PEP_synth phosphoeno 98.7 6.3E-08 1.4E-12 114.0 11.7 129 450-593 613-766 (782)
28 TIGR01417 PTS_I_fam phosphoeno 98.6 1.7E-07 3.7E-12 106.7 11.4 133 446-593 366-525 (565)
29 PRK11177 phosphoenolpyruvate-p 98.6 2E-07 4.3E-12 106.3 9.9 133 446-593 367-526 (575)
30 COG2301 CitE Citrate lyase bet 97.6 8.7E-05 1.9E-09 78.1 6.3 153 451-614 68-244 (283)
31 cd00480 malate_synt Malate syn 97.6 0.00013 2.8E-09 82.5 7.7 94 463-558 185-304 (511)
32 cd00727 malate_synt_A Malate s 97.4 0.00022 4.8E-09 80.3 6.1 93 463-558 186-304 (511)
33 TIGR01344 malate_syn_A malate 97.4 0.00025 5.5E-09 79.8 6.0 93 464-558 187-305 (511)
34 KOG2323 Pyruvate kinase [Carbo 97.3 5E-06 1.1E-10 92.5 -8.3 449 57-596 17-487 (501)
35 PF02896 PEP-utilizers_C: PEP- 97.3 0.00098 2.1E-08 70.7 8.7 129 451-594 124-279 (293)
36 PRK09255 malate synthase; Vali 97.1 0.00069 1.5E-08 76.8 6.4 94 462-558 206-325 (531)
37 PLN02626 malate synthase 96.4 0.009 1.9E-07 67.9 8.4 93 464-558 213-331 (551)
38 TIGR02751 PEPCase_arch phospho 96.4 0.016 3.5E-07 65.5 10.3 97 463-559 123-247 (506)
39 PRK13655 phosphoenolpyruvate c 95.8 0.039 8.4E-07 62.4 9.4 97 463-559 122-239 (494)
40 PRK08649 inosine 5-monophospha 95.6 0.13 2.8E-06 56.4 12.3 121 449-593 139-285 (368)
41 PRK11061 fused phosphoenolpyru 95.6 0.028 6E-07 66.8 7.6 113 465-592 553-691 (748)
42 PTZ00398 phosphoenolpyruvate c 94.9 0.22 4.7E-06 60.9 12.3 113 463-575 546-677 (974)
43 PRK00009 phosphoenolpyruvate c 94.4 0.19 4.2E-06 60.9 10.5 115 463-577 487-622 (911)
44 cd00381 IMPDH IMPDH: The catal 94.1 0.88 1.9E-05 49.1 13.6 123 449-593 92-226 (325)
45 TIGR01304 IMP_DH_rel_2 IMP deh 93.3 0.49 1.1E-05 52.1 10.0 113 457-593 149-284 (369)
46 cd04740 DHOD_1B_like Dihydroor 92.3 5 0.00011 42.1 15.8 149 450-615 101-284 (296)
47 PLN02274 inosine-5'-monophosph 92.2 1.4 3.1E-05 50.3 12.3 122 449-593 246-380 (505)
48 TIGR01828 pyru_phos_dikin pyru 92.0 0.77 1.7E-05 55.7 10.2 114 465-593 697-850 (856)
49 PTZ00314 inosine-5'-monophosph 91.8 2 4.3E-05 49.1 12.7 122 449-593 239-373 (495)
50 PRK08318 dihydropyrimidine deh 91.4 6.8 0.00015 43.5 16.2 130 449-593 111-282 (420)
51 PF00478 IMPDH: IMP dehydrogen 91.2 2.6 5.7E-05 46.2 12.4 123 449-593 106-240 (352)
52 TIGR03151 enACPred_II putative 91.2 3.4 7.3E-05 44.3 13.1 114 452-593 76-190 (307)
53 cd02810 DHOD_DHPD_FMN Dihydroo 90.3 11 0.00023 39.4 15.7 139 449-600 109-284 (289)
54 TIGR01302 IMP_dehydrog inosine 90.2 4.6 9.9E-05 45.5 13.7 123 448-593 221-356 (450)
55 PRK07107 inosine 5-monophospha 90.1 2.8 6E-05 48.1 11.8 116 454-593 245-381 (502)
56 TIGR01305 GMP_reduct_1 guanosi 89.9 4 8.7E-05 44.6 12.2 124 447-593 103-241 (343)
57 TIGR01037 pyrD_sub1_fam dihydr 89.8 16 0.00035 38.4 16.7 116 463-593 119-263 (300)
58 COG1080 PtsA Phosphoenolpyruva 89.8 1.3 2.8E-05 51.2 8.8 94 464-563 387-506 (574)
59 PRK05286 dihydroorotate dehydr 89.7 23 0.00051 38.4 18.1 127 462-599 169-329 (344)
60 TIGR01306 GMP_reduct_2 guanosi 89.3 2.9 6.3E-05 45.3 10.7 124 447-593 90-227 (321)
61 cd02940 DHPD_FMN Dihydropyrimi 88.9 14 0.00031 39.2 15.5 135 450-599 112-292 (299)
62 PRK07259 dihydroorotate dehydr 88.6 13 0.00028 39.2 14.9 149 450-615 103-287 (301)
63 PRK05096 guanosine 5'-monophos 88.5 6.5 0.00014 43.0 12.6 124 447-593 104-242 (346)
64 PRK06843 inosine 5-monophospha 88.2 5.9 0.00013 44.3 12.5 122 449-593 151-285 (404)
65 PRK07807 inosine 5-monophospha 87.9 6 0.00013 45.1 12.5 125 447-593 223-359 (479)
66 PRK07565 dihydroorotate dehydr 87.8 16 0.00034 39.5 15.1 131 450-593 113-268 (334)
67 cd04738 DHOD_2_like Dihydrooro 86.4 34 0.00073 36.9 16.7 128 462-600 160-321 (327)
68 PRK05458 guanosine 5'-monophos 85.9 13 0.00028 40.5 13.1 123 449-593 95-230 (326)
69 PRK09279 pyruvate phosphate di 85.7 3.7 8.1E-05 50.0 9.9 133 446-593 676-856 (879)
70 PLN02826 dihydroorotate dehydr 85.0 35 0.00075 38.3 16.3 139 462-615 216-395 (409)
71 cd04732 HisA HisA. Phosphorib 84.5 19 0.00041 36.2 13.0 130 452-600 84-230 (234)
72 PF03102 NeuB: NeuB family; I 84.1 5.7 0.00012 41.3 9.2 97 472-599 53-154 (241)
73 PRK05567 inosine 5'-monophosph 83.5 15 0.00032 41.8 12.9 120 452-593 229-360 (486)
74 PTZ00170 D-ribulose-5-phosphat 83.4 21 0.00045 36.6 12.8 136 455-611 80-223 (228)
75 COG3605 PtsP Signal transducti 83.4 4.9 0.00011 46.8 8.9 114 465-593 561-700 (756)
76 cd04722 TIM_phosphate_binding 83.2 16 0.00035 34.3 11.2 119 457-593 78-199 (200)
77 PRK13210 putative L-xylulose 5 82.9 21 0.00045 36.7 12.8 131 455-592 21-179 (284)
78 cd00958 DhnA Class I fructose- 82.2 5.8 0.00012 40.2 8.2 75 448-533 140-221 (235)
79 TIGR00736 nifR3_rel_arch TIM-b 82.0 19 0.00041 37.3 11.9 128 447-595 76-222 (231)
80 PF00311 PEPcase: Phosphoenolp 81.4 4.3 9.2E-05 49.1 7.9 95 465-559 366-481 (794)
81 cd04724 Tryptophan_synthase_al 80.0 26 0.00057 36.1 12.2 56 491-560 76-135 (242)
82 TIGR01303 IMP_DH_rel_1 IMP deh 80.0 23 0.0005 40.4 12.8 121 448-593 222-357 (475)
83 COG0574 PpsA Phosphoenolpyruva 79.8 5.5 0.00012 47.7 8.2 113 465-593 597-723 (740)
84 PRK15452 putative protease; Pr 79.7 15 0.00032 41.6 11.1 124 450-593 10-174 (443)
85 PRK09856 fructoselysine 3-epim 79.7 42 0.00091 34.4 13.7 142 455-605 18-199 (275)
86 cd03174 DRE_TIM_metallolyase D 79.5 75 0.0016 32.2 16.1 152 446-610 14-186 (265)
87 COG2352 Ppc Phosphoenolpyruvat 77.4 9.5 0.00021 46.0 8.9 115 444-558 459-600 (910)
88 cd07944 DRE_TIM_HOA_like 4-hyd 76.7 75 0.0016 33.3 14.6 143 447-608 16-176 (266)
89 PRK01130 N-acetylmannosamine-6 76.6 41 0.00089 33.8 12.3 119 452-593 77-202 (221)
90 cd02803 OYE_like_FMN_family Ol 76.3 93 0.002 33.0 15.4 138 446-593 129-311 (327)
91 PF14010 PEPcase_2: Phosphoeno 76.2 6.5 0.00014 44.9 6.9 96 463-558 121-244 (491)
92 TIGR03128 RuMP_HxlA 3-hexulose 75.9 85 0.0018 30.9 14.4 133 455-608 68-205 (206)
93 PF01261 AP_endonuc_2: Xylose 75.9 14 0.0003 35.3 8.4 144 457-606 2-183 (213)
94 TIGR00007 phosphoribosylformim 74.7 47 0.001 33.4 12.1 130 451-599 82-228 (230)
95 PRK13125 trpA tryptophan synth 74.1 92 0.002 32.1 14.3 113 456-593 94-214 (244)
96 PRK13209 L-xylulose 5-phosphat 74.0 59 0.0013 33.5 12.9 130 455-593 26-185 (283)
97 cd02811 IDI-2_FMN Isopentenyl- 73.5 80 0.0017 34.1 14.2 28 554-593 255-284 (326)
98 cd04729 NanE N-acetylmannosami 73.0 56 0.0012 32.8 12.1 118 452-593 81-206 (219)
99 TIGR01362 KDO8P_synth 3-deoxy- 72.9 14 0.0003 39.0 7.9 135 442-601 71-229 (258)
100 TIGR01163 rpe ribulose-phospha 72.9 98 0.0021 30.3 13.8 129 455-611 16-158 (210)
101 PRK14024 phosphoribosyl isomer 72.8 69 0.0015 32.9 13.0 133 451-602 85-235 (241)
102 PRK13813 orotidine 5'-phosphat 72.8 86 0.0019 31.3 13.4 130 457-610 74-213 (215)
103 PRK07695 transcriptional regul 72.6 58 0.0013 32.2 12.1 122 457-611 67-199 (201)
104 cd04739 DHOD_like Dihydroorota 72.6 1.3E+02 0.0029 32.4 15.6 151 450-615 111-291 (325)
105 PRK02083 imidazole glycerol ph 71.3 59 0.0013 33.5 12.1 70 519-602 166-240 (253)
106 PRK12457 2-dehydro-3-deoxyphos 71.1 18 0.00039 38.7 8.3 148 442-600 85-244 (281)
107 cd00381 IMPDH IMPDH: The catal 70.4 9.2 0.0002 41.3 6.2 47 173-219 85-132 (325)
108 PF04551 GcpE: GcpE protein; 69.5 35 0.00076 37.7 10.3 140 462-613 44-201 (359)
109 PF01207 Dus: Dihydrouridine s 68.9 16 0.00035 39.1 7.6 106 469-593 102-213 (309)
110 PF03060 NMO: Nitronate monoox 68.6 54 0.0012 35.4 11.6 113 453-593 103-219 (330)
111 cd04730 NPD_like 2-Nitropropan 68.5 78 0.0017 31.7 12.1 115 452-593 69-185 (236)
112 PRK13307 bifunctional formalde 68.0 79 0.0017 35.4 12.9 126 458-609 245-378 (391)
113 PRK00694 4-hydroxy-3-methylbut 67.7 93 0.002 36.6 13.6 150 451-614 46-229 (606)
114 PLN02925 4-hydroxy-3-methylbut 67.6 1.4E+02 0.0029 36.1 15.1 144 456-615 116-295 (733)
115 PRK00278 trpC indole-3-glycero 67.3 1.3E+02 0.0029 31.4 13.8 125 456-606 126-257 (260)
116 COG0826 Collagenase and relate 67.1 31 0.00066 37.9 9.4 97 450-564 13-123 (347)
117 TIGR00612 ispG_gcpE 1-hydroxy- 67.0 1.4E+02 0.0031 32.9 14.2 132 462-613 47-192 (346)
118 TIGR02090 LEU1_arch isopropylm 66.9 1.5E+02 0.0032 32.6 14.7 149 447-611 18-182 (363)
119 PF00682 HMGL-like: HMGL-like 66.3 1.4E+02 0.0031 30.0 13.5 145 448-605 11-171 (237)
120 PRK10415 tRNA-dihydrouridine s 65.9 42 0.00091 36.2 10.1 108 470-593 114-224 (321)
121 cd00408 DHDPS-like Dihydrodipi 65.7 48 0.001 34.4 10.2 94 502-611 18-121 (281)
122 PRK05096 guanosine 5'-monophos 65.3 14 0.00029 40.6 6.1 49 171-219 97-148 (346)
123 PRK08883 ribulose-phosphate 3- 65.1 1.6E+02 0.0034 30.2 13.6 132 455-611 73-217 (220)
124 PF03796 DnaB_C: DnaB-like hel 65.1 35 0.00075 35.0 8.9 75 518-593 129-212 (259)
125 PRK00748 1-(5-phosphoribosyl)- 64.1 1.1E+02 0.0023 30.8 12.1 127 452-599 85-230 (233)
126 cd04741 DHOD_1A_like Dihydroor 63.9 2E+02 0.0044 30.5 16.3 119 462-593 119-272 (294)
127 PRK05283 deoxyribose-phosphate 63.8 58 0.0013 34.4 10.3 151 446-612 21-190 (257)
128 cd02809 alpha_hydroxyacid_oxid 63.6 1.1E+02 0.0025 32.3 12.7 108 456-593 135-256 (299)
129 PRK00915 2-isopropylmalate syn 63.2 2.9E+02 0.0062 32.0 16.7 153 447-610 22-189 (513)
130 cd04726 KGPDC_HPS 3-Keto-L-gul 62.9 1.3E+02 0.0029 29.2 12.3 125 456-603 70-200 (202)
131 cd00331 IGPS Indole-3-glycerol 62.8 1.7E+02 0.0037 29.2 13.7 123 455-604 86-216 (217)
132 TIGR03569 NeuB_NnaB N-acetylne 62.8 49 0.0011 36.1 9.8 81 473-584 74-154 (329)
133 TIGR01302 IMP_dehydrog inosine 62.5 16 0.00035 41.1 6.4 44 175-218 217-261 (450)
134 cd04731 HisF The cyclase subun 62.4 1E+02 0.0022 31.3 11.7 43 550-601 189-235 (243)
135 PRK10550 tRNA-dihydrouridine s 62.1 38 0.00082 36.5 8.8 108 470-593 112-224 (312)
136 PF09953 DUF2187: Uncharacteri 61.7 16 0.00035 30.2 4.5 32 390-422 3-34 (57)
137 cd02932 OYE_YqiM_FMN Old yello 61.1 2.3E+02 0.0049 30.5 14.6 65 519-593 254-320 (336)
138 TIGR03572 WbuZ glycosyl amidat 61.0 1.2E+02 0.0026 30.6 11.9 60 519-594 166-228 (232)
139 PF00478 IMPDH: IMP dehydrogen 60.4 22 0.00047 39.2 6.7 51 169-219 95-146 (352)
140 cd04742 NPD_FabD 2-Nitropropan 60.3 1.2E+02 0.0027 34.2 12.6 124 453-593 85-248 (418)
141 TIGR03586 PseI pseudaminic aci 60.2 54 0.0012 35.8 9.6 89 473-592 75-166 (327)
142 TIGR01305 GMP_reduct_1 guanosi 60.1 19 0.00041 39.5 6.1 50 170-219 95-147 (343)
143 cd07945 DRE_TIM_CMS Leptospira 60.0 1.6E+02 0.0035 31.2 13.0 150 448-611 16-188 (280)
144 PLN02321 2-isopropylmalate syn 59.3 1.8E+02 0.0038 34.8 14.2 155 447-611 104-281 (632)
145 TIGR00737 nifR3_yhdG putative 59.0 1.1E+02 0.0025 32.6 11.8 104 472-593 114-222 (319)
146 PRK13398 3-deoxy-7-phosphohept 58.9 1.1E+02 0.0023 32.5 11.3 135 451-601 99-239 (266)
147 COG1646 Predicted phosphate-bi 58.8 18 0.00038 37.8 5.3 74 493-592 17-92 (240)
148 cd04501 SGNH_hydrolase_like_4 58.8 29 0.00063 33.0 6.6 56 502-561 46-103 (183)
149 cd00984 DnaB_C DnaB helicase C 58.4 93 0.002 31.1 10.5 74 519-592 123-204 (242)
150 cd03316 MR_like Mandelate race 58.3 51 0.0011 35.4 9.1 70 161-234 118-197 (357)
151 PRK05198 2-dehydro-3-deoxyphos 58.2 35 0.00076 36.2 7.5 147 442-601 79-237 (264)
152 PRK01033 imidazole glycerol ph 58.0 1.3E+02 0.0028 31.3 11.7 140 454-611 87-249 (258)
153 PTZ00314 inosine-5'-monophosph 57.8 17 0.00037 41.7 5.6 44 176-219 235-279 (495)
154 TIGR00735 hisF imidazoleglycer 57.4 1.5E+02 0.0032 30.6 12.0 42 550-600 195-240 (254)
155 CHL00200 trpA tryptophan synth 57.3 2.5E+02 0.0054 29.7 13.7 117 456-593 112-231 (263)
156 TIGR00739 yajC preprotein tran 56.1 27 0.00058 30.7 5.3 36 385-421 32-67 (84)
157 PRK02048 4-hydroxy-3-methylbut 55.6 2.2E+02 0.0047 33.8 13.8 147 452-614 43-225 (611)
158 cd02911 arch_FMN Archeal FMN-b 55.4 79 0.0017 32.6 9.5 103 470-598 121-225 (233)
159 PRK00366 ispG 4-hydroxy-3-meth 55.3 3.4E+02 0.0073 30.3 14.6 130 462-613 55-201 (360)
160 PF00290 Trp_syntA: Tryptophan 55.2 2.8E+02 0.0061 29.3 13.9 131 462-614 115-256 (259)
161 cd00019 AP2Ec AP endonuclease 55.2 2.1E+02 0.0045 29.5 12.7 130 455-590 15-171 (279)
162 PLN02495 oxidoreductase, actin 54.9 76 0.0017 35.4 9.9 87 491-593 113-214 (385)
163 cd00959 DeoC 2-deoxyribose-5-p 54.8 1.1E+02 0.0023 30.7 10.1 145 446-610 12-172 (203)
164 PRK13111 trpA tryptophan synth 54.8 1.3E+02 0.0029 31.6 11.2 55 491-559 89-147 (258)
165 PLN03033 2-dehydro-3-deoxyphos 54.6 58 0.0013 35.0 8.4 145 442-598 85-245 (290)
166 TIGR00973 leuA_bact 2-isopropy 53.9 2.2E+02 0.0047 32.8 13.6 149 447-610 19-186 (494)
167 PRK08195 4-hyroxy-2-oxovalerat 53.8 3.3E+02 0.0071 29.7 14.7 143 448-610 22-183 (337)
168 TIGR00262 trpA tryptophan synt 53.7 2.7E+02 0.006 29.1 13.3 77 494-592 91-171 (256)
169 PRK07028 bifunctional hexulose 53.3 3.1E+02 0.0068 30.6 14.5 138 455-615 73-216 (430)
170 TIGR01036 pyrD_sub2 dihydrooro 53.3 3.3E+02 0.0072 29.6 15.5 128 462-600 166-329 (335)
171 cd00408 DHDPS-like Dihydrodipi 53.0 1.7E+02 0.0037 30.3 11.7 109 455-569 23-149 (281)
172 PRK04147 N-acetylneuraminate l 52.8 1E+02 0.0022 32.6 10.0 82 519-611 38-128 (293)
173 PRK08745 ribulose-phosphate 3- 52.3 2.9E+02 0.0062 28.6 14.2 129 458-610 81-220 (223)
174 TIGR01949 AroFGH_arch predicte 52.0 50 0.0011 34.3 7.5 74 451-533 156-234 (258)
175 cd01828 sialate_O-acetylestera 51.8 1.1E+02 0.0024 28.6 9.3 54 503-561 37-94 (169)
176 COG0809 QueA S-adenosylmethion 51.8 49 0.0011 36.3 7.5 55 538-593 233-298 (348)
177 PLN02591 tryptophan synthase 51.6 3.1E+02 0.0068 28.8 13.8 136 457-612 100-245 (250)
178 PLN02495 oxidoreductase, actin 51.5 3.9E+02 0.0085 29.9 15.7 73 448-525 124-213 (385)
179 cd00452 KDPG_aldolase KDPG and 51.5 2.5E+02 0.0054 27.6 13.0 98 459-593 25-124 (190)
180 TIGR00674 dapA dihydrodipicoli 51.3 1.1E+02 0.0023 32.3 9.9 83 519-612 32-123 (285)
181 cd00945 Aldolase_Class_I Class 51.2 1.2E+02 0.0026 28.9 9.5 121 456-596 19-152 (201)
182 cd02801 DUS_like_FMN Dihydrour 51.2 1.6E+02 0.0034 29.3 10.8 112 466-593 100-213 (231)
183 PRK07226 fructose-bisphosphate 50.7 1.3E+02 0.0028 31.4 10.4 97 446-559 34-144 (267)
184 PF01645 Glu_synthase: Conserv 50.4 57 0.0012 36.2 7.9 151 414-593 136-303 (368)
185 PRK05718 keto-hydroxyglutarate 50.3 47 0.001 34.0 6.8 44 542-601 96-139 (212)
186 cd00950 DHDPS Dihydrodipicolin 50.3 1.9E+02 0.004 30.2 11.5 106 455-569 26-152 (284)
187 PRK06552 keto-hydroxyglutarate 50.0 60 0.0013 33.2 7.5 112 463-593 13-136 (213)
188 PRK06015 keto-hydroxyglutarate 49.9 27 0.00058 35.6 4.9 38 542-593 85-124 (201)
189 PLN02746 hydroxymethylglutaryl 49.8 2.1E+02 0.0046 31.5 12.2 147 448-610 65-237 (347)
190 cd07939 DRE_TIM_NifV Streptomy 49.8 3.2E+02 0.0068 28.3 14.9 147 447-609 16-178 (259)
191 PRK13396 3-deoxy-7-phosphohept 49.6 2.1E+02 0.0046 31.7 12.1 132 447-593 148-306 (352)
192 COG0821 gcpE 1-hydroxy-2-methy 49.5 3.5E+02 0.0075 30.1 13.3 134 462-613 49-194 (361)
193 TIGR01361 DAHP_synth_Bsub phos 49.4 61 0.0013 34.0 7.7 89 474-593 75-166 (260)
194 TIGR00977 LeuA_rel 2-isopropyl 49.4 3E+02 0.0064 32.1 13.8 155 447-611 19-195 (526)
195 PRK11858 aksA trans-homoaconit 49.1 3.3E+02 0.0071 30.1 13.6 150 447-611 22-186 (378)
196 PRK08227 autoinducer 2 aldolas 49.1 1.1E+02 0.0023 32.6 9.4 130 456-611 100-248 (264)
197 PRK09989 hypothetical protein; 48.9 2.5E+02 0.0054 28.7 12.0 143 454-604 19-195 (258)
198 TIGR02660 nifV_homocitr homoci 48.8 1.8E+02 0.004 31.9 11.6 149 447-611 19-183 (365)
199 TIGR02320 PEP_mutase phosphoen 48.7 2.4E+02 0.0052 30.2 12.1 113 475-615 136-261 (285)
200 TIGR00665 DnaB replicative DNA 48.5 1.1E+02 0.0024 33.9 10.0 57 537-593 328-387 (434)
201 PRK08255 salicylyl-CoA 5-hydro 48.4 4.5E+02 0.0098 31.8 15.7 145 447-603 540-732 (765)
202 cd04737 LOX_like_FMN L-Lactate 48.4 1.3E+02 0.0028 33.2 10.2 89 473-593 209-305 (351)
203 cd00377 ICL_PEPM Members of th 48.1 1.4E+02 0.003 31.0 10.0 91 457-559 91-201 (243)
204 TIGR02814 pfaD_fam PfaD family 48.1 2.1E+02 0.0045 32.8 12.0 144 434-593 75-253 (444)
205 PRK08649 inosine 5-monophospha 48.0 1.1E+02 0.0023 34.0 9.6 102 474-596 117-218 (368)
206 TIGR00126 deoC deoxyribose-pho 47.6 1.6E+02 0.0035 30.1 10.1 146 446-610 13-173 (211)
207 PRK05458 guanosine 5'-monophos 47.3 35 0.00076 37.2 5.6 33 186-218 102-136 (326)
208 PRK12595 bifunctional 3-deoxy- 46.9 70 0.0015 35.3 8.0 87 475-593 169-259 (360)
209 PRK06843 inosine 5-monophospha 46.8 36 0.00077 38.3 5.7 48 172-219 143-191 (404)
210 cd03325 D-galactonate_dehydrat 46.5 99 0.0021 33.5 9.0 75 160-235 103-185 (352)
211 PRK13585 1-(5-phosphoribosyl)- 46.4 3.3E+02 0.0071 27.5 12.5 131 451-600 86-233 (241)
212 PRK05581 ribulose-phosphate 3- 46.4 3E+02 0.0066 27.1 15.2 136 453-609 74-218 (220)
213 COG0119 LeuA Isopropylmalate/h 46.3 2.2E+02 0.0048 32.1 11.8 155 447-611 20-187 (409)
214 PRK15447 putative protease; Pr 46.3 1.1E+02 0.0024 32.6 9.2 110 451-582 15-150 (301)
215 PLN02274 inosine-5'-monophosph 46.0 37 0.0008 39.1 5.9 46 173-218 239-285 (505)
216 PRK05437 isopentenyl pyrophosp 45.9 3.5E+02 0.0076 29.7 13.1 28 554-593 261-290 (352)
217 PRK00286 xseA exodeoxyribonucl 45.8 67 0.0015 35.9 7.8 108 433-560 119-230 (438)
218 PF01180 DHO_dh: Dihydroorotat 45.7 2.6E+02 0.0057 29.4 11.9 123 461-598 123-283 (295)
219 cd08556 GDPD Glycerophosphodie 45.6 99 0.0021 29.3 8.0 95 464-592 93-187 (189)
220 PRK14057 epimerase; Provisiona 45.2 1.8E+02 0.0039 30.8 10.3 136 455-613 90-245 (254)
221 COG2070 Dioxygenases related t 44.7 1.9E+02 0.0041 31.6 10.8 116 450-592 90-212 (336)
222 cd02812 PcrB_like PcrB_like pr 44.4 38 0.00083 34.9 5.1 63 505-593 15-77 (219)
223 TIGR00259 thylakoid_BtpA membr 44.3 61 0.0013 34.3 6.7 70 519-597 41-115 (257)
224 TIGR01949 AroFGH_arch predicte 44.1 94 0.002 32.2 8.1 62 169-230 69-142 (258)
225 KOG2550 IMP dehydrogenase/GMP 44.0 1.1E+02 0.0024 34.8 8.7 127 450-597 250-396 (503)
226 PRK05886 yajC preprotein trans 44.0 40 0.00087 31.3 4.7 45 385-434 33-77 (109)
227 cd03321 mandelate_racemase Man 44.0 49 0.0011 35.9 6.2 72 159-235 121-195 (355)
228 cd03319 L-Ala-DL-Glu_epimerase 43.9 92 0.002 33.0 8.2 68 161-235 116-186 (316)
229 cd04728 ThiG Thiazole synthase 43.8 2.7E+02 0.0059 29.5 11.2 79 519-611 144-226 (248)
230 TIGR02313 HpaI-NOT-DapA 2,4-di 43.6 1.9E+02 0.004 30.7 10.4 82 519-612 34-125 (294)
231 PRK05585 yajC preprotein trans 43.5 39 0.00085 31.0 4.5 36 385-421 47-82 (106)
232 PRK10737 FKBP-type peptidyl-pr 43.5 55 0.0012 33.3 6.0 100 342-452 42-146 (196)
233 PRK09997 hydroxypyruvate isome 43.4 3.7E+02 0.0081 27.4 13.2 145 455-605 20-196 (258)
234 PRK04302 triosephosphate isome 43.3 3.7E+02 0.0079 27.2 12.5 131 456-607 78-220 (223)
235 cd00952 CHBPH_aldolase Trans-o 43.3 2E+02 0.0044 30.8 10.6 83 519-612 42-133 (309)
236 PRK13397 3-deoxy-7-phosphohept 43.1 87 0.0019 33.0 7.6 85 477-593 68-156 (250)
237 PRK07226 fructose-bisphosphate 43.1 1.1E+02 0.0023 32.1 8.3 52 186-237 99-152 (267)
238 PRK00507 deoxyribose-phosphate 43.0 2.1E+02 0.0044 29.5 10.2 145 446-609 17-176 (221)
239 TIGR00742 yjbN tRNA dihydrouri 43.0 1.7E+02 0.0037 31.7 10.0 110 466-593 100-223 (318)
240 cd03332 LMO_FMN L-Lactate 2-mo 42.9 1.5E+02 0.0032 33.2 9.8 90 473-593 241-337 (383)
241 cd00945 Aldolase_Class_I Class 42.9 1.3E+02 0.0028 28.6 8.3 28 585-612 77-110 (201)
242 cd04726 KGPDC_HPS 3-Keto-L-gul 42.8 2.4E+02 0.0052 27.5 10.4 115 449-593 11-133 (202)
243 PRK00311 panB 3-methyl-2-oxobu 42.8 2.5E+02 0.0054 29.8 11.0 129 448-593 20-181 (264)
244 PRK07114 keto-hydroxyglutarate 42.7 84 0.0018 32.5 7.3 114 462-593 14-139 (222)
245 COG0167 PyrD Dihydroorotate de 42.5 4.9E+02 0.011 28.4 15.9 149 448-615 106-295 (310)
246 TIGR00262 trpA tryptophan synt 42.4 4.2E+02 0.0092 27.7 13.0 116 456-593 108-227 (256)
247 PRK04180 pyridoxal biosynthesi 42.3 3.9E+02 0.0085 29.0 12.3 57 548-613 197-258 (293)
248 cd03328 MR_like_3 Mandelate ra 42.1 1.2E+02 0.0027 32.9 8.9 70 160-235 117-191 (352)
249 PF00899 ThiF: ThiF family; I 42.0 1.5E+02 0.0033 27.3 8.3 68 476-561 57-124 (135)
250 PRK00208 thiG thiazole synthas 42.0 2.6E+02 0.0057 29.6 10.8 77 519-611 144-226 (250)
251 TIGR00259 thylakoid_BtpA membr 41.9 4.5E+02 0.0098 27.9 13.3 124 448-593 87-227 (257)
252 TIGR02708 L_lactate_ox L-lacta 41.7 2.1E+02 0.0046 31.8 10.7 87 473-593 216-312 (367)
253 cd00951 KDGDH 5-dehydro-4-deox 41.6 2.9E+02 0.0064 29.1 11.4 24 585-608 196-220 (289)
254 PF01791 DeoC: DeoC/LacD famil 41.3 1.4E+02 0.0031 30.3 8.8 146 446-612 13-188 (236)
255 PRK03170 dihydrodipicolinate s 41.2 2.2E+02 0.0048 29.9 10.4 83 519-612 35-126 (292)
256 cd03327 MR_like_2 Mandelate ra 41.0 1.4E+02 0.0031 32.1 9.2 75 160-235 99-180 (341)
257 COG0036 Rpe Pentose-5-phosphat 41.0 2.1E+02 0.0046 29.7 9.8 125 457-609 79-217 (220)
258 cd01822 Lysophospholipase_L1_l 40.8 94 0.002 29.0 6.9 32 529-560 76-107 (177)
259 cd03315 MLE_like Muconate lact 40.6 1.2E+02 0.0026 31.2 8.2 68 160-233 66-136 (265)
260 PRK13397 3-deoxy-7-phosphohept 40.4 3.6E+02 0.0077 28.5 11.6 98 491-601 122-227 (250)
261 COG4043 Preprotein translocase 40.1 35 0.00077 31.3 3.6 25 388-412 31-55 (111)
262 PF04028 DUF374: Domain of unk 40.1 1.1E+02 0.0023 26.5 6.4 57 169-233 10-68 (74)
263 PRK15452 putative protease; Pr 39.8 67 0.0014 36.5 6.6 82 492-593 4-96 (443)
264 PRK11815 tRNA-dihydrouridine s 39.3 3.6E+02 0.0078 29.3 11.9 119 464-600 108-244 (333)
265 COG2876 AroA 3-deoxy-D-arabino 39.1 2.6E+02 0.0056 30.1 10.2 144 442-602 87-258 (286)
266 PRK09722 allulose-6-phosphate 38.7 4.7E+02 0.01 27.2 14.4 136 455-612 74-222 (229)
267 TIGR00683 nanA N-acetylneurami 38.4 2.6E+02 0.0057 29.6 10.5 82 519-611 34-125 (290)
268 PRK09389 (R)-citramalate synth 38.2 6.8E+02 0.015 28.8 14.6 148 447-609 20-182 (488)
269 PRK08760 replicative DNA helic 38.2 2.3E+02 0.005 32.4 10.6 57 537-593 362-421 (476)
270 TIGR01306 GMP_reduct_2 guanosi 38.1 65 0.0014 35.1 5.9 47 172-218 84-133 (321)
271 TIGR00559 pdxJ pyridoxine 5'-p 38.0 1E+02 0.0022 32.4 7.0 136 428-599 10-157 (237)
272 cd02801 DUS_like_FMN Dihydrour 37.9 1.2E+02 0.0026 30.2 7.5 58 160-219 46-121 (231)
273 cd00958 DhnA Class I fructose- 37.7 4.4E+02 0.0095 26.5 15.7 132 450-609 76-234 (235)
274 PRK00278 trpC indole-3-glycero 37.7 5E+02 0.011 27.2 13.0 110 452-593 71-187 (260)
275 cd07940 DRE_TIM_IPMS 2-isoprop 37.7 4.9E+02 0.011 27.0 15.5 152 447-610 16-183 (268)
276 PRK07028 bifunctional hexulose 37.7 3.7E+02 0.008 30.1 12.0 126 443-593 8-138 (430)
277 PLN02417 dihydrodipicolinate s 37.4 2.6E+02 0.0057 29.4 10.2 82 519-611 35-125 (280)
278 cd04723 HisA_HisF Phosphoribos 37.3 4.7E+02 0.01 26.7 12.9 129 452-602 89-231 (233)
279 PF02599 CsrA: Global regulato 37.3 64 0.0014 26.3 4.4 29 392-421 7-35 (54)
280 PF00701 DHDPS: Dihydrodipicol 37.0 3.7E+02 0.0081 28.1 11.3 98 455-561 27-134 (289)
281 cd00429 RPE Ribulose-5-phospha 36.9 4E+02 0.0087 25.8 13.3 85 456-561 18-112 (211)
282 cd04736 MDH_FMN Mandelate dehy 36.5 2E+02 0.0043 32.0 9.4 49 550-610 285-341 (361)
283 PF05690 ThiG: Thiazole biosyn 36.5 1.2E+02 0.0027 31.9 7.4 78 519-610 144-225 (247)
284 TIGR01163 rpe ribulose-phospha 36.5 4.1E+02 0.009 25.9 13.1 127 456-604 72-208 (210)
285 PF00016 RuBisCO_large: Ribulo 36.4 55 0.0012 35.5 5.1 123 477-612 2-134 (309)
286 PRK14017 galactonate dehydrata 36.3 1.4E+02 0.0031 32.7 8.3 76 159-235 103-186 (382)
287 TIGR00542 hxl6Piso_put hexulos 36.3 5E+02 0.011 26.7 13.7 130 456-592 22-179 (279)
288 TIGR01303 IMP_DH_rel_1 IMP deh 36.2 60 0.0013 37.1 5.6 47 182-232 225-272 (475)
289 PF04055 Radical_SAM: Radical 36.1 1.8E+02 0.0039 26.1 7.8 54 169-222 75-139 (166)
290 TIGR00674 dapA dihydrodipicoli 36.0 4.2E+02 0.009 27.8 11.5 107 455-570 24-151 (285)
291 PRK12344 putative alpha-isopro 35.8 7.6E+02 0.016 28.7 17.2 160 447-611 23-199 (524)
292 PF01959 DHQS: 3-dehydroquinat 35.7 80 0.0017 34.9 6.2 72 452-530 83-157 (354)
293 TIGR00683 nanA N-acetylneurami 35.1 4.7E+02 0.01 27.7 11.7 96 455-559 26-133 (290)
294 COG0826 Collagenase and relate 35.0 1E+02 0.0022 33.9 6.9 72 519-593 26-99 (347)
295 PRK13600 putative ribosomal pr 34.8 58 0.0013 28.8 4.1 37 542-590 43-80 (84)
296 PF00834 Ribul_P_3_epim: Ribul 34.8 1.5E+02 0.0032 30.0 7.6 89 455-557 72-167 (201)
297 cd04743 NPD_PKS 2-Nitropropane 34.7 4.3E+02 0.0093 29.0 11.5 94 454-564 73-175 (320)
298 TIGR01501 MthylAspMutase methy 34.6 86 0.0019 29.9 5.5 39 456-494 45-86 (134)
299 TIGR03600 phage_DnaB phage rep 34.4 2.8E+02 0.006 30.8 10.3 57 537-593 327-386 (421)
300 cd03317 NAAAR N-acylamino acid 34.3 1.5E+02 0.0032 32.0 8.0 67 159-234 116-186 (354)
301 PRK05567 inosine 5'-monophosph 34.3 92 0.002 35.5 6.7 48 171-218 217-265 (486)
302 COG2876 AroA 3-deoxy-D-arabino 34.1 1.4E+02 0.0031 32.0 7.4 64 490-553 213-284 (286)
303 TIGR01859 fruc_bis_ald_ fructo 34.0 4.8E+02 0.01 27.8 11.6 111 492-611 75-198 (282)
304 PF09370 TIM-br_sig_trns: TIM- 33.7 1.1E+02 0.0024 32.6 6.7 62 174-236 151-223 (268)
305 PRK07428 nicotinate-nucleotide 33.1 1.5E+02 0.0033 31.8 7.7 66 451-527 204-272 (288)
306 KOG1816 Ubiquitin fusion-degra 32.9 96 0.0021 33.5 6.0 34 388-421 143-178 (308)
307 cd03318 MLE Muconate Lactonizi 32.9 1.7E+02 0.0036 31.8 8.1 73 160-236 122-198 (365)
308 PRK05265 pyridoxine 5'-phospha 32.7 1.3E+02 0.0028 31.6 6.8 136 428-599 13-160 (239)
309 cd02071 MM_CoA_mut_B12_BD meth 32.6 1.1E+02 0.0023 28.1 5.7 42 456-497 43-87 (122)
310 COG0042 tRNA-dihydrouridine sy 32.5 1.9E+02 0.0041 31.4 8.4 112 466-593 112-228 (323)
311 cd07937 DRE_TIM_PC_TC_5S Pyruv 32.5 6.1E+02 0.013 26.6 13.7 151 447-610 17-189 (275)
312 cd00950 DHDPS Dihydrodipicolin 32.2 3.5E+02 0.0075 28.2 10.1 82 519-611 34-124 (284)
313 PRK07535 methyltetrahydrofolat 32.1 83 0.0018 33.1 5.4 56 186-243 31-86 (261)
314 PRK02261 methylaspartate mutas 32.0 1.2E+02 0.0025 28.9 6.0 67 457-526 48-119 (137)
315 TIGR01361 DAHP_synth_Bsub phos 31.9 4.8E+02 0.01 27.4 11.0 40 548-593 188-229 (260)
316 TIGR01182 eda Entner-Doudoroff 31.8 2.3E+02 0.0049 29.0 8.3 94 462-593 33-128 (204)
317 PRK12595 bifunctional 3-deoxy- 31.7 6.3E+02 0.014 28.0 12.3 65 519-593 252-322 (360)
318 PRK07695 transcriptional regul 31.7 1.7E+02 0.0037 28.9 7.4 33 186-218 20-52 (201)
319 TIGR03234 OH-pyruv-isom hydrox 31.7 5.5E+02 0.012 25.9 12.6 144 455-605 19-195 (254)
320 PRK13398 3-deoxy-7-phosphohept 31.6 2.3E+02 0.0051 29.9 8.7 100 474-604 77-185 (266)
321 cd02808 GltS_FMN Glutamate syn 31.5 3.9E+02 0.0085 29.7 10.9 107 469-593 193-314 (392)
322 PRK10558 alpha-dehydro-beta-de 31.5 2.1E+02 0.0045 30.1 8.2 88 479-593 9-98 (256)
323 TIGR01304 IMP_DH_rel_2 IMP deh 31.3 2.7E+02 0.0059 31.0 9.4 80 494-593 133-216 (369)
324 PRK01712 carbon storage regula 31.1 1.1E+02 0.0024 25.9 4.9 30 391-421 6-35 (64)
325 TIGR00343 pyridoxal 5'-phospha 31.0 4.7E+02 0.01 28.3 10.7 109 469-615 51-166 (287)
326 PRK10528 multifunctional acyl- 30.8 1.6E+02 0.0034 28.8 6.9 31 529-559 83-113 (191)
327 TIGR03249 KdgD 5-dehydro-4-deo 30.7 5.4E+02 0.012 27.2 11.3 98 456-560 32-136 (296)
328 cd02922 FCB2_FMN Flavocytochro 30.6 4.5E+02 0.0097 28.9 10.9 96 472-593 200-300 (344)
329 PF04312 DUF460: Protein of un 30.5 43 0.00093 32.3 2.7 20 544-563 66-85 (138)
330 PRK00043 thiE thiamine-phospha 30.5 2E+02 0.0042 28.2 7.6 39 186-224 27-65 (212)
331 PRK03620 5-dehydro-4-deoxygluc 30.5 5.4E+02 0.012 27.4 11.4 96 456-559 34-137 (303)
332 cd04175 Rap1 Rap1 subgroup. T 30.5 2.3E+02 0.005 26.1 7.6 104 502-609 57-162 (164)
333 TIGR01768 GGGP-family geranylg 30.5 87 0.0019 32.5 5.1 50 519-592 27-77 (223)
334 PRK03620 5-dehydro-4-deoxygluc 30.3 4.3E+02 0.0094 28.1 10.6 80 519-611 41-130 (303)
335 cd00003 PNPsynthase Pyridoxine 30.0 1.8E+02 0.0039 30.5 7.3 136 428-599 10-157 (234)
336 PRK01130 N-acetylmannosamine-6 29.9 5.8E+02 0.012 25.5 11.2 116 449-593 21-146 (221)
337 cd00755 YgdL_like Family of ac 29.9 1.2E+02 0.0027 31.2 6.2 87 477-584 67-153 (231)
338 PRK03170 dihydrodipicolinate s 29.8 5.8E+02 0.013 26.7 11.4 97 455-560 27-133 (292)
339 TIGR00693 thiE thiamine-phosph 29.8 1.8E+02 0.004 28.3 7.2 44 186-229 19-62 (196)
340 TIGR02151 IPP_isom_2 isopenten 29.8 7.5E+02 0.016 26.8 13.1 29 553-593 253-283 (333)
341 PF02699 YajC: Preprotein tran 29.8 21 0.00045 31.2 0.4 36 385-421 31-66 (82)
342 cd03309 CmuC_like CmuC_like. P 29.7 7.5E+02 0.016 26.8 13.1 95 519-614 169-291 (321)
343 PRK00568 carbon storage regula 29.7 1.4E+02 0.003 26.2 5.4 29 392-421 7-35 (76)
344 TIGR03581 EF_0839 conserved hy 29.7 1.5E+02 0.0033 30.9 6.6 86 476-575 136-223 (236)
345 TIGR02318 phosphono_phnM phosp 29.7 7.8E+02 0.017 27.0 13.5 124 463-588 92-265 (376)
346 TIGR03217 4OH_2_O_val_ald 4-hy 29.4 7.8E+02 0.017 26.9 14.3 144 447-610 20-182 (333)
347 cd04735 OYE_like_4_FMN Old yel 29.3 7.8E+02 0.017 26.8 13.0 63 519-593 248-313 (353)
348 PF03437 BtpA: BtpA family; I 29.2 2.4E+02 0.0052 29.8 8.2 86 449-545 156-251 (254)
349 PRK05581 ribulose-phosphate 3- 29.1 5.7E+02 0.012 25.2 11.9 85 456-561 22-116 (220)
350 cd00954 NAL N-Acetylneuraminic 28.9 2.5E+02 0.0055 29.5 8.5 82 519-611 35-125 (288)
351 PLN02535 glycolate oxidase 28.7 2.6E+02 0.0056 31.1 8.7 91 473-593 211-307 (364)
352 COG1047 SlpA FKBP-type peptidy 28.6 1.8E+02 0.0038 29.3 6.7 77 342-422 43-124 (174)
353 PLN02424 ketopantoate hydroxym 28.5 6.8E+02 0.015 27.7 11.7 13 502-514 114-126 (332)
354 TIGR02534 mucon_cyclo muconate 28.5 2.2E+02 0.0049 30.9 8.2 71 160-234 121-195 (368)
355 cd01830 XynE_like SGNH_hydrola 28.3 1.4E+02 0.003 29.2 6.1 42 520-561 75-126 (204)
356 cd04727 pdxS PdxS is a subunit 28.3 7.9E+02 0.017 26.6 13.3 143 448-611 71-247 (283)
357 cd07938 DRE_TIM_HMGL 3-hydroxy 28.3 7.3E+02 0.016 26.2 12.0 153 447-609 16-188 (274)
358 cd03329 MR_like_4 Mandelate ra 28.3 2.4E+02 0.0052 30.7 8.4 48 186-235 151-198 (368)
359 PLN02417 dihydrodipicolinate s 28.2 6E+02 0.013 26.7 11.1 94 455-559 27-130 (280)
360 PRK05748 replicative DNA helic 28.1 4.4E+02 0.0096 29.6 10.7 57 537-593 338-397 (448)
361 COG2185 Sbm Methylmalonyl-CoA 28.0 1.8E+02 0.004 28.3 6.5 65 454-526 54-122 (143)
362 cd01485 E1-1_like Ubiquitin ac 27.9 2.4E+02 0.0052 28.2 7.7 68 477-561 77-145 (198)
363 cd01492 Aos1_SUMO Ubiquitin ac 27.8 3.1E+02 0.0068 27.3 8.5 66 477-561 77-142 (197)
364 PTZ00369 Ras-like protein; Pro 27.7 2.8E+02 0.0061 26.6 8.0 91 520-612 77-169 (189)
365 PLN02979 glycolate oxidase 27.7 4.1E+02 0.0088 29.7 9.9 91 473-593 211-307 (366)
366 PRK09165 replicative DNA helic 27.5 3.6E+02 0.0078 31.0 9.9 57 537-593 366-425 (497)
367 COG1862 YajC Preprotein transl 27.4 1E+02 0.0022 28.1 4.4 44 385-433 38-81 (97)
368 PRK13505 formate--tetrahydrofo 27.3 1.2E+02 0.0027 35.4 6.1 21 573-593 444-465 (557)
369 PRK04452 acetyl-CoA decarbonyl 27.2 8.6E+02 0.019 26.7 13.0 153 450-614 136-314 (319)
370 PRK15447 putative protease; Pr 27.1 1.7E+02 0.0038 31.2 6.9 41 519-561 28-68 (301)
371 cd02072 Glm_B12_BD B12 binding 27.0 1.7E+02 0.0037 27.8 6.1 41 456-496 43-86 (128)
372 PRK02901 O-succinylbenzoate sy 27.0 4.7E+02 0.01 28.5 10.2 91 143-235 49-143 (327)
373 COG2984 ABC-type uncharacteriz 27.0 6.3E+02 0.014 27.8 11.0 119 435-573 133-255 (322)
374 PRK07259 dihydroorotate dehydr 26.9 4E+02 0.0088 28.0 9.6 84 491-592 91-188 (301)
375 cd07941 DRE_TIM_LeuA3 Desulfob 26.8 7.5E+02 0.016 25.9 15.5 153 447-608 16-189 (273)
376 PF03983 SHD1: SLA1 homology d 26.7 2.3E+02 0.0051 24.4 6.2 50 395-459 12-64 (70)
377 TIGR03239 GarL 2-dehydro-3-deo 26.5 2.7E+02 0.0058 29.1 8.0 87 480-593 3-91 (249)
378 cd00405 PRAI Phosphoribosylant 26.4 5.3E+02 0.011 25.5 9.8 72 452-528 8-82 (203)
379 COG0673 MviM Predicted dehydro 26.3 78 0.0017 33.2 4.1 85 502-611 54-142 (342)
380 TIGR02356 adenyl_thiF thiazole 26.2 2.5E+02 0.0054 28.0 7.5 67 477-561 77-143 (202)
381 PF01274 Malate_synthase: Mala 26.2 2.5E+02 0.0054 32.8 8.3 122 463-593 204-364 (526)
382 KOG3111 D-ribulose-5-phosphate 26.0 7.6E+02 0.016 25.6 10.9 132 457-613 82-221 (224)
383 PRK13601 putative L7Ae-like ri 25.9 1.1E+02 0.0025 26.7 4.4 55 520-595 25-80 (82)
384 cd00564 TMP_TenI Thiamine mono 25.9 5.7E+02 0.012 24.2 11.7 118 456-605 65-194 (196)
385 PHA02542 41 41 helicase; Provi 25.6 3.2E+02 0.007 31.3 9.1 58 536-593 326-384 (473)
386 PF04476 DUF556: Protein of un 25.5 4E+02 0.0086 28.1 8.8 98 456-562 74-188 (235)
387 PRK05595 replicative DNA helic 25.2 4.8E+02 0.01 29.3 10.3 58 536-593 333-393 (444)
388 COG2870 RfaE ADP-heptose synth 25.1 3.8E+02 0.0082 30.6 9.1 85 462-559 64-176 (467)
389 PF11965 DUF3479: Domain of un 24.9 2E+02 0.0043 28.6 6.3 53 454-513 49-101 (164)
390 TIGR00237 xseA exodeoxyribonuc 24.8 1.7E+02 0.0038 32.9 6.7 138 400-560 81-225 (432)
391 TIGR00202 csrA carbon storage 24.8 2.2E+02 0.0047 24.5 5.7 30 391-421 6-35 (69)
392 PF01079 Hint: Hint module; I 24.8 1.7E+02 0.0036 30.2 6.0 15 385-399 100-114 (217)
393 cd04727 pdxS PdxS is a subunit 24.7 7.5E+02 0.016 26.8 10.9 106 470-613 50-162 (283)
394 TIGR01496 DHPS dihydropteroate 24.7 1.2E+02 0.0026 31.7 5.1 53 186-240 29-89 (257)
395 cd02933 OYE_like_FMN Old yello 24.4 9.4E+02 0.02 26.2 13.1 131 446-594 140-315 (338)
396 cd03320 OSBS o-Succinylbenzoat 24.4 2.6E+02 0.0056 28.9 7.4 62 170-234 72-135 (263)
397 cd07948 DRE_TIM_HCS Saccharomy 24.3 8.4E+02 0.018 25.6 13.9 157 433-609 9-180 (262)
398 cd04502 SGNH_hydrolase_like_7 24.3 1.8E+02 0.0039 27.3 5.8 42 520-561 51-96 (171)
399 PF07905 PucR: Purine cataboli 24.2 2.5E+02 0.0054 25.8 6.6 33 519-559 72-104 (123)
400 PF13407 Peripla_BP_4: Peripla 24.2 1.5E+02 0.0033 29.3 5.6 68 477-559 17-85 (257)
401 TIGR01769 GGGP geranylgeranylg 24.2 1.3E+02 0.0028 30.7 5.1 63 505-592 11-75 (205)
402 PRK02615 thiamine-phosphate py 24.2 6E+02 0.013 28.1 10.5 41 186-226 163-203 (347)
403 TIGR02355 moeB molybdopterin s 24.1 2.8E+02 0.0061 28.6 7.6 67 477-561 80-146 (240)
404 PRK04169 geranylgeranylglycery 24.0 1.4E+02 0.0031 31.1 5.4 51 519-593 32-83 (232)
405 PRK05636 replicative DNA helic 24.0 4.2E+02 0.0092 30.6 9.7 57 537-593 398-457 (505)
406 PRK15116 sulfur acceptor prote 23.9 1.9E+02 0.004 30.8 6.3 90 476-586 85-174 (268)
407 cd05298 GH4_GlvA_pagL_like Gly 23.9 1.5E+02 0.0032 33.6 6.0 67 455-526 67-141 (437)
408 cd06557 KPHMT-like Ketopantoat 23.8 4.1E+02 0.009 28.0 8.8 14 545-558 118-131 (254)
409 cd04729 NanE N-acetylmannosami 23.8 7.4E+02 0.016 24.7 10.9 113 452-593 28-150 (219)
410 COG4873 Uncharacterized protei 23.6 1.3E+02 0.0029 25.8 4.1 33 388-421 21-53 (81)
411 cd00953 KDG_aldolase KDG (2-ke 23.4 7E+02 0.015 26.2 10.6 38 573-610 75-120 (279)
412 PF01113 DapB_N: Dihydrodipico 23.4 2.9E+02 0.0063 25.3 6.8 40 505-561 59-98 (124)
413 PHA02545 45 sliding clamp; Pro 23.2 2.6E+02 0.0056 29.2 6.9 71 392-469 68-141 (223)
414 COG0329 DapA Dihydrodipicolina 23.2 7E+02 0.015 26.7 10.6 95 502-612 25-129 (299)
415 PRK00043 thiE thiamine-phospha 23.2 3.2E+02 0.0069 26.7 7.5 20 505-529 172-191 (212)
416 COG2225 AceB Malate synthase [ 23.2 1.9E+02 0.0041 33.8 6.5 99 464-564 220-342 (545)
417 PF00150 Cellulase: Cellulase 23.1 1.6E+02 0.0035 29.6 5.6 48 186-236 27-85 (281)
418 PLN02591 tryptophan synthase 23.0 1.2E+02 0.0027 31.8 4.7 46 501-560 92-137 (250)
419 cd06294 PBP1_ycjW_transcriptio 23.0 3E+02 0.0066 27.1 7.4 14 547-560 76-89 (270)
420 cd00564 TMP_TenI Thiamine mono 22.8 3.3E+02 0.0071 25.8 7.4 42 186-227 18-59 (196)
421 PF02310 B12-binding: B12 bind 22.7 2.4E+02 0.0051 24.9 6.0 68 457-532 45-117 (121)
422 TIGR00520 asnASE_II L-asparagi 22.7 71 0.0015 35.1 3.0 44 519-568 262-305 (349)
423 cd00429 RPE Ribulose-5-phospha 22.6 7.1E+02 0.015 24.1 12.5 129 455-605 72-210 (211)
424 PF13727 CoA_binding_3: CoA-bi 22.5 1.8E+02 0.0039 27.0 5.4 46 502-559 128-173 (175)
425 PF00677 Lum_binding: Lumazine 22.4 3.6E+02 0.0079 23.4 6.9 59 378-438 20-82 (85)
426 PRK02615 thiamine-phosphate py 22.4 2.3E+02 0.005 31.2 6.9 72 448-531 245-327 (347)
427 smart00870 Asparaginase Aspara 22.4 79 0.0017 34.2 3.3 44 519-568 235-278 (323)
428 TIGR02717 AcCoA-syn-alpha acet 22.4 6.7E+02 0.015 28.3 10.8 32 173-205 68-99 (447)
429 PRK08318 dihydropyrimidine deh 22.3 6.4E+02 0.014 28.0 10.5 85 492-592 100-199 (420)
430 PRK08999 hypothetical protein; 22.3 1.9E+02 0.0041 30.5 6.1 84 435-528 207-310 (312)
431 TIGR02321 Pphn_pyruv_hyd phosp 22.2 5.5E+02 0.012 27.6 9.5 110 478-614 136-255 (290)
432 cd02808 GltS_FMN Glutamate syn 22.2 2.2E+02 0.0048 31.7 6.8 96 452-562 226-341 (392)
433 PRK08091 ribulose-phosphate 3- 22.1 9.1E+02 0.02 25.2 13.6 68 455-536 83-153 (228)
434 PF13344 Hydrolase_6: Haloacid 22.0 1.3E+02 0.0027 26.8 4.0 46 535-588 12-57 (101)
435 PRK09461 ansA cytoplasmic aspa 21.9 82 0.0018 34.3 3.3 44 519-568 233-278 (335)
436 PRK07004 replicative DNA helic 21.6 6E+02 0.013 28.9 10.2 58 536-593 346-406 (460)
437 PF01136 Peptidase_U32: Peptid 21.6 1.5E+02 0.0032 29.8 4.9 37 186-222 162-198 (233)
438 TIGR02311 HpaI 2,4-dihydroxyhe 21.6 7.4E+02 0.016 25.7 10.2 89 480-595 3-93 (249)
439 cd04111 Rab39 Rab39 subfamily. 21.4 4.5E+02 0.0097 26.1 8.3 52 574-628 128-181 (211)
440 PF00809 Pterin_bind: Pterin b 21.4 99 0.0022 31.2 3.6 53 186-239 25-85 (210)
441 PF02581 TMP-TENI: Thiamine mo 21.4 4.2E+02 0.009 25.8 7.9 44 186-229 18-61 (180)
442 PF00710 Asparaginase: Asparag 21.4 1.1E+02 0.0023 33.0 4.0 45 519-569 224-268 (313)
443 PRK07807 inosine 5-monophospha 21.3 1.5E+02 0.0033 34.0 5.4 34 186-219 232-265 (479)
444 TIGR00640 acid_CoA_mut_C methy 21.3 2.2E+02 0.0048 26.9 5.7 63 455-526 45-112 (132)
445 COG1674 FtsK DNA segregation A 21.2 71 0.0015 39.1 3.0 47 529-577 650-701 (858)
446 COG0434 SgcQ Predicted TIM-bar 21.1 2.5E+02 0.0053 29.9 6.3 74 511-597 43-121 (263)
447 cd02803 OYE_like_FMN_family Ol 21.1 1.8E+02 0.004 30.7 5.7 50 186-235 147-217 (327)
448 PRK13111 trpA tryptophan synth 21.0 7.3E+02 0.016 26.1 10.0 114 456-593 110-228 (258)
449 PRK06512 thiamine-phosphate py 20.9 4E+02 0.0087 27.3 7.9 44 186-229 32-76 (221)
450 PRK15072 bifunctional D-altron 20.8 4.7E+02 0.01 29.0 9.0 50 186-235 135-215 (404)
451 COG4948 L-alanine-DL-glutamate 20.8 2.4E+02 0.0053 30.6 6.7 73 159-235 120-197 (372)
452 PF03659 Glyco_hydro_71: Glyco 20.7 3.6E+02 0.0077 30.2 8.0 49 186-235 23-71 (386)
453 TIGR00190 thiC thiamine biosyn 20.7 4.6E+02 0.0099 29.8 8.6 98 445-559 134-261 (423)
454 PRK10425 DNase TatD; Provision 20.6 8.8E+02 0.019 25.3 10.5 100 451-561 15-128 (258)
455 COG0252 AnsB L-asparaginase/ar 20.5 1.2E+02 0.0027 33.4 4.3 45 519-569 254-298 (351)
456 TIGR00735 hisF imidazoleglycer 20.5 4.3E+02 0.0093 27.3 8.1 86 457-557 162-253 (254)
457 cd08567 GDPD_SpGDE_like Glycer 20.4 3.4E+02 0.0074 27.5 7.3 42 541-593 218-259 (263)
458 PRK02290 3-dehydroquinate synt 20.3 2.3E+02 0.0049 31.4 6.2 83 452-552 75-160 (344)
459 cd03326 MR_like_1 Mandelate ra 20.3 4.5E+02 0.0097 29.2 8.7 47 186-235 168-214 (385)
460 cd00423 Pterin_binding Pterin 20.3 1.6E+02 0.0035 30.5 5.0 52 186-239 30-89 (258)
461 COG3457 Predicted amino acid r 20.2 1.4E+02 0.0031 32.8 4.6 75 432-515 68-150 (353)
462 PRK09248 putative hydrolase; V 20.1 2.1E+02 0.0045 29.3 5.7 93 461-561 92-192 (246)
463 PRK11579 putative oxidoreducta 20.1 1.8E+02 0.0039 31.2 5.5 83 503-611 52-139 (346)
464 PRK04180 pyridoxal biosynthesi 20.1 1E+03 0.022 25.9 10.9 109 467-613 56-171 (293)
No 1
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=8.3e-162 Score=1333.64 Aligned_cols=575 Identities=45% Similarity=0.701 Sum_probs=531.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCCCchhHHHHHHHHHhhccchHHHHHHHhhCcccccCCchhhhHHhH
Q 006783 36 LKSQGSILDKLKAVHLHLLASERWNASRLKLCHRHYSDSARNLIHYLALRCLDLEQLKEDLSCNSLLNLESINSYILASL 115 (631)
Q Consensus 36 ~~~~~~l~~~l~~lr~~~~~~~~~~~~~~~~~~~~~~~sa~Nl~~YlalR~~Dlr~LQ~~L~~~GlssLgr~E~~v~~~l 115 (631)
...+.+|+++|++||+++.+.++|+..++.+++|.|++||+||+||||||+||+|+||++|+++|||||||+|+||+++|
T Consensus 12 ~~~~~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~sa~NL~hYlalR~~Dlr~Lq~~L~~~GlssLg~~E~~vl~~L 91 (608)
T PRK14725 12 QEELQRLLEALDELRARLAAAEAAHADWLAAVDPSHRASARNLLHYLALRQHDLRDLQEALADLGLSSLGRAEAHVLAAL 91 (608)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHhCccccccchhhHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcccccccccccchhhhHhHHhHHHHhHHhhcCCCCCCCCeEEEEecCCCCChHH--HHHHHHhC
Q 006783 116 TAGIQLLDNQKSSSLNTQESILYQEENGNFMIQALGKKLSANKELLLGPLRHNQTNHIMVTVGQEASESE--ISDILKAG 193 (631)
Q Consensus 116 ~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~G~~~~~R~TkImvTlgp~aa~~~--i~~Li~aG 193 (631)
++|+++|++++|++.. +++.+...++.+|+++|++|+++|||+++..|+|||||||||++++++ |++|+++|
T Consensus 92 ~av~~~l~~l~~~~~~------~~~~~~~~~~~~g~~lL~~~~~~l~G~~~~~R~tkImvTlg~~Aa~d~e~i~~Li~aG 165 (608)
T PRK14725 92 DAVLAVLRALLGEGPA------YPPEDTAVTFEEGDELLDEHAEALLGPPPSGRPTRIMVTLPTEAADDPDLVRRLLAAG 165 (608)
T ss_pred HHHHHHHHHHhCCCCC------CCCCCchhhhhhHHHHHHHHHHHhcCCCCCCCCceEEEeCCCcccCCHHHHHHHHHcC
Confidence 9999999999998542 233446666677779999999999999999999999999997666554 99999999
Q ss_pred CCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccCCCCceeccCCCCCCCCccccCcccccccC
Q 006783 194 ASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLKPGPCIIKISPKKNATGNVILPSQVWLSHK 273 (631)
Q Consensus 194 MdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~~gp~v~~~~p~rd~~G~v~~pa~~wl~~~ 273 (631)
|||||||||||+|++|++||+|||++++++|++|+|+|||+|||||||.++++|.++|++|+||++|+|++||++||++.
T Consensus 166 mdvaRINcAHg~~e~w~~mi~~vR~a~~~~gr~~~I~mDL~GPKiRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~ 245 (608)
T PRK14725 166 MDIARINCAHDDPEAWRAMIANVRTAEEELGRRCRIAMDLAGPKLRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLTAS 245 (608)
T ss_pred CCEeeeECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcceEEecCCCccccccccccccccccccchhheeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccc------------------cccchhhhccCccccccccccccC
Q 006783 274 DAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDAR------------------ECSRTAYVQSGTELHRKGKKIRFP 335 (631)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r------------------~~~~~~y~~~gt~~~~~g~~~~~~ 335 (631)
+++|++ .++....+.++++|+.+++.||+|+|+|+| +|.+++|+++||.+.+.+ ..
T Consensus 246 ~~~~~~--~~~~~~~~~v~~~~~~~l~~Gd~i~~~DaRg~~R~l~V~~~~~~~~~~~~~~~~Y~~~G~~l~~~~----~~ 319 (608)
T PRK14725 246 ESPPPS--PPPGPVGLPVDPEWLARLEPGDELRFTDARGKKRKLTVTEVDDEGVLAEGSQTAYLANGTLLRLGR----HD 319 (608)
T ss_pred cCCCCC--CCccccccccChhhhhhcCCCceeeeeeccccceeeeEEeecCceeEEeecceeeeccCceeeecc----cc
Confidence 764333 233344466799999999999999999999 799999999999998854 45
Q ss_pred CcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeEEEEEEEEeCCE
Q 006783 336 AAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKIWGLIQGASISE 415 (631)
Q Consensus 336 ~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI~~~V~~v~~~~ 415 (631)
.++++++|..||.++|++||+|.|+++..+.....+. ...++|+||+|++|+.+++||+||||||+|.++|++++++.
T Consensus 320 ~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~~~~--~~~~~i~~t~p~l~~~v~~G~~VlidDG~I~l~V~~~~~~~ 397 (608)
T PRK14725 320 STRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPAQGD--APPARISCTLPEAFRAARVGERVWFDDGKIGAVVVKVEADE 397 (608)
T ss_pred ccccccccccCcceEecCCCEEEEecCCcCCccccCC--CCccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCE
Confidence 6778999999999999999999999874321100010 11248999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEE
Q 006783 416 IVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVV 495 (631)
Q Consensus 416 i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~Ii 495 (631)
+.|+|++++++||+|+++||||||++.+++|+||+||++||+|+++++|||++|||++++||..++++|.++|.++++||
T Consensus 398 v~~~V~~a~~~gg~L~s~KGiNlP~~~l~lp~LTekD~~dl~f~~~~vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~Ii 477 (608)
T PRK14725 398 VELRITHARPGGSKLKAGKGINLPDSHLPLPALTDKDLEDLAFVAKHADIVALSFVRSPEDVRLLLDALEKLGADDLGVV 477 (608)
T ss_pred EEEEEEEecCCCCEecCCCceecCCCCCCCCCCCHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887789999
Q ss_pred EeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCCh
Q 006783 496 LKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTR 575 (631)
Q Consensus 496 aKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtR 575 (631)
|||||++||+||++|+.++|++. +|||||||||||+|+|+++|+++||+|||+|+++||||||||||||||++||+|||
T Consensus 478 aKIEt~~av~nL~eIl~~am~~~-~DGIMIARGDLgvEi~~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTR 556 (608)
T PRK14725 478 LKIETRRAFENLPRILLEAMRHP-RFGVMIARGDLAVEVGFERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSR 556 (608)
T ss_pred EEECCHHHHHHHHHHHHhhccCC-CcEEEEECCccccccCHHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCc
Confidence 99999999999999999999987 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhccccCcccccCCccHHHHHHHHHHHHHHHhhc--ccccccCCCC
Q 006783 576 AEITDVASARRASCVMLNKGKHVVEAVSTLDKILHINTAQ--MKADLMKPLL 625 (631)
Q Consensus 576 AEvtDva~a~gaD~vmLskG~ypveAV~~L~~Il~r~e~~--~k~~~lr~l~ 625 (631)
||+||||||.||||||||+|+||+|||++|++|+++||.| ||+++||+|+
T Consensus 557 AEvtDVAnAvgaD~VMLS~G~yPveAV~~l~~I~~r~e~~~~Kk~~~lr~l~ 608 (608)
T PRK14725 557 AEITDAAMALRAECVMLNKGPHIVEAVRVLDDILRRMEEHQRKKRSLLRRLR 608 (608)
T ss_pred hhHHHHHhhhcCCEEeecCCCCHHHHHHHHHHHHHHHHHhhhccchhhcccC
Confidence 9999999999999999999999999999999999999988 3566999986
No 2
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=2e-133 Score=1099.01 Aligned_cols=480 Identities=38% Similarity=0.579 Sum_probs=431.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-hHhhhhhhhhc-CCCCchhHHHHHHHHHhhccchHHHHHHHhhCcccccCCchhhhHH
Q 006783 36 LKSQGSILDKLKAVHLHLLAS-ERWNASRLKLC-HRHYSDSARNLIHYLALRCLDLEQLKEDLSCNSLLNLESINSYILA 113 (631)
Q Consensus 36 ~~~~~~l~~~l~~lr~~~~~~-~~~~~~~~~~~-~~~~~~sa~Nl~~YlalR~~Dlr~LQ~~L~~~GlssLgr~E~~v~~ 113 (631)
.-++++|+++|++||+++.+. ++++..+..++ +|.|++||+||+||||||+||+|+||++|+++|||||||+|+||++
T Consensus 5 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sa~nl~~yl~lr~~d~~~lq~~l~~~glssl~~~e~~v~~ 84 (493)
T PRK08187 5 LSEPAALLEALLALRADVVEEAQARLAGWASRIERPEFLPSAANLAHYLALRRHDLRPLQRALMPLGLSSLGRLESRVLP 84 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccchhHHHHHHHHHHHHhhhHHHHHHHHHHhccchhccchhHHHH
Confidence 457889999999999999965 44444444444 6999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcccccccccccchhhhHhHHhHHHHhHHhhcCCCCCCCCeEEEEecC-CCCChHH-HHHHHH
Q 006783 114 SLTAGIQLLDNQKSSSLNTQESILYQEENGNFMIQALGKKLSANKELLLGPLRHNQTNHIMVTVG-QEASESE-ISDILK 191 (631)
Q Consensus 114 ~l~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~G~~~~~R~TkImvTlg-p~aa~~~-i~~Li~ 191 (631)
+|++|+++|++++|++..+ +.+...++.+|.++|++|++.|||+++..|+|||||||| |++.+.+ |++|++
T Consensus 85 ~l~~~~~~l~~~~~~~~~~-------~~~~~~~~~~g~~~l~~~~~~l~g~~~~~r~tkIv~Tlg~pa~~~~e~i~~Li~ 157 (493)
T PRK08187 85 TLDAVIAALAALCGEPGPP-------PRPSPEQFFAGERLLAAHTEELFGPRPAARRTRIMVTLPSEAADDPDFVLRLAE 157 (493)
T ss_pred HHHHHHHHHHHHhCCCCCC-------CCCchhhhhhHHHHHHHHHHHHcCCCcCCCCceEEEECCCCccCCHHHHHHHHH
Confidence 9999999999999987531 222334444556999999999999999999999999996 6666666 999999
Q ss_pred hCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccCCCCceeccCCCCCCCCccccCcccccc
Q 006783 192 AGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLKPGPCIIKISPKKNATGNVILPSQVWLS 271 (631)
Q Consensus 192 aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~~gp~v~~~~p~rd~~G~v~~pa~~wl~ 271 (631)
+||||||||||||++++|++||++||++++++|++|+|+|||+|||||||.+.+++..
T Consensus 158 aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~g~~i~Il~DL~GPKIRtG~l~~~~~~---------------------- 215 (493)
T PRK08187 158 RGMDCARINCAHDDPAAWQAMIGHLRQAERATGRRCKILMDLAGPKIRTGAVAGPLGK---------------------- 215 (493)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCceeecccCCCCcc----------------------
Confidence 9999999999999999999999999999999999999999999999999999754210
Q ss_pred cCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCccccccccccccCCcccccCCCCccceec
Q 006783 272 HKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTELHRKGKKIRFPAAQVVDVPAVEPFIRL 351 (631)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~~~~~g~~~~~~~~~~~~~p~~~~~i~l 351 (631)
..|++||.|+|+...
T Consensus 216 -------------------------~~l~~Gd~i~l~~~~---------------------------------------- 230 (493)
T PRK08187 216 -------------------------TRLYTGDRLALVAQG---------------------------------------- 230 (493)
T ss_pred -------------------------EEecCCCEEEEeccc----------------------------------------
Confidence 257888888886321
Q ss_pred ccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeEEEEEEEEeCCEEEEEEEecCCCCceec
Q 006783 352 RVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKIWGLIQGASISEIVVSITHAGPRGTKLG 431 (631)
Q Consensus 352 ~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI~~~V~~v~~~~i~~~V~~a~~~Gg~L~ 431 (631)
.....+ .+...|+||+|++|+.+++||+||||||+|.++|++++++.+.|+|++++++||+|+
T Consensus 231 ------------~~~~~~-----~~~~~i~~~~~~l~~~v~~Gd~IlidDG~I~l~V~~v~~~~v~~~V~~~~~~gg~L~ 293 (493)
T PRK08187 231 ------------PPRRID-----EEHFQVTCTLPEILARLAVGARVWIDDGKLGARVERVGPGGALLEVTHARPKGLKLK 293 (493)
T ss_pred ------------cccCCC-----CCccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEEecCCCeEec
Confidence 000000 024689999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCCcccCCCCChhcHHhHHHHHhcCCEEEEeccCChhHHHHHHHHHHHhC---CCCceEEEeecChhhhcchH
Q 006783 432 SGKSINIPKSNIHFEGLTTKDLMDLEFVASHADMVGISFVRDSCDIAMLRKELEKRK---VQNLGVVLKIETKSGFERLP 508 (631)
Q Consensus 432 s~KGINlP~~~l~lp~LTekD~~dl~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~---~~~~~IiaKIEt~~av~NL~ 508 (631)
++||||||++.+++|+||++|++||+|+++++|+|++|||++++||..++++|.+.+ ..++.||+||||++|++||+
T Consensus 294 ~~KgiNlP~~~vrin~LtekD~~DL~f~~~~vD~I~lSfV~saeDV~~l~~~L~~~~~~~~~~~~IIaKIET~~gv~Nl~ 373 (493)
T PRK08187 294 PEKGLNFPDTALDLPALTEKDRADLDFVARHADLVGYSFVQSPGDVEALQAALAARRPDDWRKLGLVLKIETPRAVANLP 373 (493)
T ss_pred CCCcccccCceecCCCCCHhHHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHHHHhCCCCCCCCeEEEEECCHHHHHHHH
Confidence 999999999999999999999999999998999999999999999999999998765 35799999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccC
Q 006783 509 HILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRAS 588 (631)
Q Consensus 509 eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD 588 (631)
+|+.+++++ .++|||||||||++|+|+++++.+|++|+++|+++||||||||||||||+++|.|||||||||||++|||
T Consensus 374 eI~~~ad~~-~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PTRAEvtDvAnadgaD 452 (493)
T PRK08187 374 ELIVQAAGR-QPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPSRAEMTDAAMAARAE 452 (493)
T ss_pred HHHHHhCcC-CCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCchHHHHHHHhhcCCC
Confidence 999887433 3679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccHHHHHHHHHHHHHHHhhc--ccccccCCCCCC
Q 006783 589 CVMLNKGKHVVEAVSTLDKILHINTAQ--MKADLMKPLLPS 627 (631)
Q Consensus 589 ~vmLskG~ypveAV~~L~~Il~r~e~~--~k~~~lr~l~~~ 627 (631)
|||||+|+||+|||++|++|+.+||.| ||+++||+|++|
T Consensus 453 avMLs~G~ypveaV~~l~~I~~~~e~~~~k~~~~lr~l~~~ 493 (493)
T PRK08187 453 CVMLNKGPYLVEAVTFLDDLLARMDGHQHKKTPQLRALRSW 493 (493)
T ss_pred EEeecCCCCHHHHHHHHHHHHHHHHHhhhcCchhhhhhccC
Confidence 999999999999999999999999988 466699999999
No 3
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=5.6e-96 Score=777.92 Aligned_cols=332 Identities=39% Similarity=0.598 Sum_probs=290.0
Q ss_pred CCCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccCCC
Q 006783 168 NQTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLKPG 246 (631)
Q Consensus 168 ~R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~~g 246 (631)
+|+|||||||||++.+.+ |++|+++||||||||||||++++|+++|+++|+++++++++|+|++||+|||||||.+.++
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~~~i~IllDl~GPkIRtg~l~~g 80 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELGKPIAILLDLKGPKIRTGRLKDG 80 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTTTS-EEEEEE-TS-EBB-BBTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccCCceEEEeccCCCcceeeeeccc
Confidence 499999999999999999 9999999999999999999999999999999999999999999999999999999999764
Q ss_pred CceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCcccc
Q 006783 247 PCIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTELH 326 (631)
Q Consensus 247 p~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~~~ 326 (631)
+.. ..|++||+|+|+... .|..+
T Consensus 81 ~~~-----------------------------------------------i~L~~G~~v~lt~d~-----~~~~~----- 103 (348)
T PF00224_consen 81 KKE-----------------------------------------------IELKKGDTVTLTTDD-----SYEES----- 103 (348)
T ss_dssp SSS-----------------------------------------------EEE-TTSEEEEESSC-----TGTTC-----
T ss_pred ccc-----------------------------------------------ccccCCCEEEEEecc-----ccccc-----
Confidence 321 258889999887321 11100
Q ss_pred ccccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeEEE
Q 006783 327 RKGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKIWG 406 (631)
Q Consensus 327 ~~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI~~ 406 (631)
++...|+|+++++++.|++||+|++|||+|.+
T Consensus 104 ------------------------------------------------g~~~~I~v~~~~l~~~v~~Gd~IlidDG~i~l 135 (348)
T PF00224_consen 104 ------------------------------------------------GDSNRIPVNYPELFEDVKPGDKILIDDGKIEL 135 (348)
T ss_dssp ------------------------------------------------BBSSEEEBSSTTHHHHS-TTEEEEETTTTEEE
T ss_pred ------------------------------------------------cCcccccCCchhhhhhcCCCCEEEEcCCCcEE
Confidence 12468999999999999999999999999999
Q ss_pred EEEEEeCCE-EEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHH
Q 006783 407 LIQGASISE-IVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKEL 484 (631)
Q Consensus 407 ~V~~v~~~~-i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L 484 (631)
+|+++.++. +.|+|. +||+|+++||||||+.++++|+||+||++||+|+++ ++|||++|||++++||.++|++|
T Consensus 136 ~V~~v~~~~~i~~~v~----~~G~L~~~KgVnlp~~~~~lp~LtekD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~l 211 (348)
T PF00224_consen 136 EVTEVDGDSSIKCEVL----NGGKLKSRKGVNLPGVDLDLPALTEKDKEDIKFAVENGVDFIALSFVRSAEDVKELRKIL 211 (348)
T ss_dssp EEEEEESTEEEEEEES----S-EEEESSEBEEETTS---S-SS-HHHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHHH
T ss_pred EEEEEcCCcceeEEeC----CCCCccCCccceecccccccccCCHHHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHHh
Confidence 999999999 999986 789999999999999999999999999999999998 69999999999999999999999
Q ss_pred HHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechh
Q 006783 485 EKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVL 564 (631)
Q Consensus 485 ~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvL 564 (631)
.+.| .++.|||||||++|++||++|+.++ |||||||||||+|+|+++|+.+||+|+++|+++|||||||||||
T Consensus 212 ~~~~-~~~~iiaKIE~~~~v~nl~eI~~~s------DgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~L 284 (348)
T PF00224_consen 212 GEKG-KDIKIIAKIETKEAVENLDEILEAS------DGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQML 284 (348)
T ss_dssp TCTT-TTSEEEEEE-SHHHHHTHHHHHHHS------SEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSS
T ss_pred hhcC-cccceeeccccHHHHhhHHHHhhhc------CeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhH
Confidence 9887 7899999999999999999999987 99999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 565 ESLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 565 ESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
|||+++|+|||||++|+||| +||||+||| +|+||+|||++|++|++++|.+
T Consensus 285 esm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~p~~~v~~~~~i~~~~E~~ 341 (348)
T PF00224_consen 285 ESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKYPVEAVKTMARIIREAEKY 341 (348)
T ss_dssp GGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999 699999999 9999999999999999999975
No 4
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=4.8e-94 Score=788.45 Aligned_cols=330 Identities=25% Similarity=0.423 Sum_probs=306.8
Q ss_pred CCCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccCCC
Q 006783 168 NQTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLKPG 246 (631)
Q Consensus 168 ~R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~~g 246 (631)
.|+|||+||+||++.+.+ |++|+++||||||||||||++++|+++|++||++++++|++++||+||+|||||||.+.++
T Consensus 24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~~ 103 (509)
T PLN02762 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKGFAVAVMMDTEGSEIHMGDLGGA 103 (509)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCceEEEecCCC
Confidence 589999999999999999 9999999999999999999999999999999999999999999999999999999999641
Q ss_pred -CceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCccc
Q 006783 247 -PCIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTEL 325 (631)
Q Consensus 247 -p~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~~ 325 (631)
+ ..|++||.|.|+...
T Consensus 104 ~~-------------------------------------------------i~l~~G~~v~lt~~~-------------- 120 (509)
T PLN02762 104 SS-------------------------------------------------AKAEDGEEWTFTVRK-------------- 120 (509)
T ss_pred cc-------------------------------------------------EEecCCCEEEEeCCc--------------
Confidence 2 157888888886210
Q ss_pred cccccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeEE
Q 006783 326 HRKGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKIW 405 (631)
Q Consensus 326 ~~~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI~ 405 (631)
..|+ .+...|+|+|+++++.+++||.|++|||+|.
T Consensus 121 --------------------------~~g~-------------------~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~ 155 (509)
T PLN02762 121 --------------------------FDGS-------------------RPEFTIQVNYDGFAEDVKVGDELVVDGGMVR 155 (509)
T ss_pred --------------------------cCCC-------------------CCCcEEeechHHHHHhcCCCCEEEEeCCEEE
Confidence 0010 0135799999999999999999999999999
Q ss_pred EEEEEEeCCEEEEEEEecCCCCceecCCceeec-------CCCcccCCCCChhcHHhHHHHHh-cCCEEEEeccCChhHH
Q 006783 406 GLIQGASISEIVVSITHAGPRGTKLGSGKSINI-------PKSNIHFEGLTTKDLMDLEFVAS-HADMVGISFVRDSCDI 477 (631)
Q Consensus 406 ~~V~~v~~~~i~~~V~~a~~~Gg~L~s~KGINl-------P~~~l~lp~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv 477 (631)
++|.+++++.+.|+|. +||.|+++||||| |++.+++|+|||||++||+|+++ ++|||++||||+++||
T Consensus 156 l~V~~~~~~~v~~~v~----~~G~l~~~KgvNl~~~g~~~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~a~Dv 231 (509)
T PLN02762 156 FEVIEKIGPDVKCKCT----DPGLLLPRANLTFWRDGSLVRERNAMLPTISSKDWLDIDFGISEGVDFIAVSFVKSAEVI 231 (509)
T ss_pred EEEEEEECCEEEEEEE----eCcEEcCCCceeeccccCCCCCCccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHH
Confidence 9999999999999986 6999999999999 99999999999999999999998 6999999999999999
Q ss_pred HHHHHHHHHhCCC-CceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCC
Q 006783 478 AMLRKELEKRKVQ-NLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVP 556 (631)
Q Consensus 478 ~~lr~~L~~~~~~-~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkP 556 (631)
..+|++|.+.|.. ++.|||||||++|++||+||+.++ |||||||||||+|+|+|+||.+||+|+++|+.+|||
T Consensus 232 ~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~s------DgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKP 305 (509)
T PLN02762 232 KHLKSYIAARSRDSDIGVIAKIESLDSLKNLEEIIRAS------DGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKP 305 (509)
T ss_pred HHHHHHHHHcCCCCCceEEEEeCCHHHHHHHHHHHHhc------CEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCC
Confidence 9999999987642 799999999999999999999987 999999999999999999999999999999999999
Q ss_pred EEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 557 VIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 557 vi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
||+||||||||++||+|||||++||||| +|+|||||| .|+||+|||++|++|++++|.+
T Consensus 306 VIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavMLSgETA~G~yPveaV~~m~~I~~~aE~~ 370 (509)
T PLN02762 306 VIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGLYPEKALSVLRSVSLRMELW 370 (509)
T ss_pred EEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEEEcchhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 799999999 9999999999999999999964
No 5
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=6.4e-94 Score=759.42 Aligned_cols=324 Identities=32% Similarity=0.502 Sum_probs=301.7
Q ss_pred CeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccCCCCc
Q 006783 170 TNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLKPGPC 248 (631)
Q Consensus 170 ~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~~gp~ 248 (631)
+++|+|||||++++.+ |++|+++||||||||||||++++|.++|++||++++ +++|++||+|||||||.+++++
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~~----~vaIl~Dl~GPkIR~G~~~~~~- 76 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLDD----SIKILGDVQGPKIRLGEIKGEQ- 76 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhhh----hcceeecCCCCcceecccCCCc-
Confidence 6899999999999999 999999999999999999999999999999999865 4899999999999999996432
Q ss_pred eeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCcccccc
Q 006783 249 IIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTELHRK 328 (631)
Q Consensus 249 v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~~~~~ 328 (631)
..|++||.|+|+...
T Consensus 77 ------------------------------------------------i~l~~G~~v~lt~~~----------------- 91 (352)
T PRK06739 77 ------------------------------------------------ITLQAGDSFILHTQP----------------- 91 (352)
T ss_pred ------------------------------------------------EEecCCCEEEEecCc-----------------
Confidence 157888888886210
Q ss_pred ccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeEEEEE
Q 006783 329 GKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKIWGLI 408 (631)
Q Consensus 329 g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI~~~V 408 (631)
. . ++...++|+++++++.+++||.||+|||+|.++|
T Consensus 92 -------------~----------~---------------------g~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V 127 (352)
T PRK06739 92 -------------V----------T---------------------GSSTEASVDYEGIANDVKVGSRILMNDGEVELIV 127 (352)
T ss_pred -------------c----------C---------------------CCCCEEecchHHHHhhcCCCCEEEEeCCEEEEEE
Confidence 0 0 1134689999999999999999999999999999
Q ss_pred EEEeCCEEEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHh
Q 006783 409 QGASISEIVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKR 487 (631)
Q Consensus 409 ~~v~~~~i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~ 487 (631)
++++++.+.|+|. +||.|+++||||||++.+++|+||+||++||+|+++ ++|||++|||++++||..+|++|.+.
T Consensus 128 ~~v~~~~v~~~v~----~gG~L~s~Kgvn~pg~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~ 203 (352)
T PRK06739 128 EKVSTDKIETKVK----TGGNISSHKGVNLPGAIVRLPAITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQY 203 (352)
T ss_pred EEEeCCEEEEEEe----eCcEEcCCCCeecccccCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 9999999999987 699999999999999999999999999999999998 79999999999999999999999998
Q ss_pred CCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhh
Q 006783 488 KVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESL 567 (631)
Q Consensus 488 ~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM 567 (631)
|..++.|||||||++|++||++|+.++ |||||||||||+|+|+|+||.+||+|++.|+++||||||||||||||
T Consensus 204 g~~~~~IiaKIE~~~av~nl~eI~~~s------DgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM 277 (352)
T PRK06739 204 KETSPNLIAKIETMEAIENFQDICKEA------DGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSM 277 (352)
T ss_pred CCCCCcEEEEECCHHHHHHHHHHHHhc------CEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhh
Confidence 767899999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhccc
Q 006783 568 VKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQMK 617 (631)
Q Consensus 568 ~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~~k 617 (631)
++||+|||||++||||| +|+||+||| +|+||++||++|++|+++.|..+|
T Consensus 278 ~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~ 333 (352)
T PRK06739 278 VDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIESVSTLRLVSEFAEHVKK 333 (352)
T ss_pred ccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999 799999999 999999999999999999997653
No 6
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=1.1e-93 Score=781.50 Aligned_cols=330 Identities=30% Similarity=0.477 Sum_probs=307.2
Q ss_pred CCCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccCCC
Q 006783 168 NQTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLKPG 246 (631)
Q Consensus 168 ~R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~~g 246 (631)
.|+||||||+||++.+.+ |++|+++||||||||||||++++|+++|++||++++++|++|+|++||+|||||||.++++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~~~~i~Il~Dl~GPkiR~g~~~~~ 80 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTGKKAAILLDTKGPEIRTMKLEGG 80 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCCCCceeccccCCC
Confidence 379999999999988889 9999999999999999999999999999999999999999999999999999999999654
Q ss_pred CceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCcccc
Q 006783 247 PCIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTELH 326 (631)
Q Consensus 247 p~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~~~ 326 (631)
+. ..|++||.+.|+..+
T Consensus 81 ~~------------------------------------------------i~l~~G~~~~l~~~~--------------- 97 (470)
T PRK09206 81 ND------------------------------------------------VSLKAGQTFTFTTDK--------------- 97 (470)
T ss_pred Ce------------------------------------------------eeecCCCEEEEEecC---------------
Confidence 21 147788888886310
Q ss_pred ccccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeEEE
Q 006783 327 RKGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKIWG 406 (631)
Q Consensus 327 ~~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI~~ 406 (631)
.. .++...|+|+|+++++.+++||+|++|||+|.+
T Consensus 98 -------------------------------------~~--------~~~~~~i~~~~~~~~~~v~~G~~i~idDG~i~l 132 (470)
T PRK09206 98 -------------------------------------SV--------VGNKERVAVTYEGFTADLSVGNTVLVDDGLIGM 132 (470)
T ss_pred -------------------------------------cc--------CCCCCEEEechHHHHhhcCCCCEEEEeCCEEEE
Confidence 00 012457999999999999999999999999999
Q ss_pred EEEEEeCCEEEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHH
Q 006783 407 LIQGASISEIVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELE 485 (631)
Q Consensus 407 ~V~~v~~~~i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~ 485 (631)
+|.+++++.+.|+|. +||.|+++||||||++.+++|+|||||++||+|+++ ++|||++||||+++||+++++++.
T Consensus 133 ~V~~~~~~~v~~~v~----~~G~l~s~Kgvn~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~ 208 (470)
T PRK09206 133 EVTAITGNEVICKVL----NNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLK 208 (470)
T ss_pred EEEEEeCCEEEEEEE----ECCEecCCCceeccCcccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHH
Confidence 999999999999997 589999999999999999999999999999999998 599999999999999999999999
Q ss_pred HhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhh
Q 006783 486 KRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLE 565 (631)
Q Consensus 486 ~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLE 565 (631)
+.+.+++.|||||||++|++||+||+.++ |||||||||||+|+|+++++.+|++|++.|+++||||||||||||
T Consensus 209 ~~~~~~~~iiaKIEt~eav~nldeIl~~~------DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLe 282 (470)
T PRK09206 209 AHGGENIQIISKIENQEGLNNFDEILEAS------DGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLD 282 (470)
T ss_pred HcCCCCceEEEEECCHHHHHhHHHHHHhC------CEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHH
Confidence 87656899999999999999999999986 999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 566 SLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 566 SM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
||++||+|||||++||||| +|+|||||| +|+||+|||++|++|++++|.+
T Consensus 283 SM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~~E~~ 338 (470)
T PRK09206 283 SMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRV 338 (470)
T ss_pred HHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999 799999996 9999999999999999999974
No 7
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=2.1e-93 Score=783.64 Aligned_cols=331 Identities=30% Similarity=0.464 Sum_probs=305.9
Q ss_pred CCCCCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccC
Q 006783 166 RHNQTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLK 244 (631)
Q Consensus 166 ~~~R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~ 244 (631)
...|+|||||||||++.+.+ +++|+++||||||||||||++++|+++|++||++++++|++|+|++||+|||||||.+.
T Consensus 18 ~~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g~~i~Il~Dl~GPkIR~g~~~ 97 (511)
T PLN02461 18 LRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANTGILCAVMLDTKGPEIRTGFLK 97 (511)
T ss_pred ccCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeEEEeeCCCCceeccccC
Confidence 34689999999999999999 99999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCcc
Q 006783 245 PGPCIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTE 324 (631)
Q Consensus 245 ~gp~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~ 324 (631)
+++. ..|++||.+.|+..
T Consensus 98 ~~~~------------------------------------------------i~l~~G~~v~lt~~-------------- 115 (511)
T PLN02461 98 DGKP------------------------------------------------VQLKQGQEITITTD-------------- 115 (511)
T ss_pred CCCc------------------------------------------------eecCCCCEEEEecC--------------
Confidence 5311 14778888887621
Q ss_pred ccccccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeE
Q 006783 325 LHRKGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKI 404 (631)
Q Consensus 325 ~~~~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI 404 (631)
... .++...|+|+|+++++.+++||+|++|||+|
T Consensus 116 --------------------------------------~~~--------~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~i 149 (511)
T PLN02461 116 --------------------------------------YSI--------KGDENMIAMSYKKLAVDVKPGSVILCADGTI 149 (511)
T ss_pred --------------------------------------Ccc--------CCCCCEEEeccHHHHhhcCCCCEEEEeCCEE
Confidence 000 0123579999999999999999999999999
Q ss_pred EEEEEEEe--CCEEEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhH-HHHHh-cCCEEEEeccCChhHHHHH
Q 006783 405 WGLIQGAS--ISEIVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDL-EFVAS-HADMVGISFVRDSCDIAML 480 (631)
Q Consensus 405 ~~~V~~v~--~~~i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl-~f~~~-~~D~V~~SFV~sa~Dv~~l 480 (631)
.++|.+++ ++.+.|+|. +||.|+++||||||++.+++|+||+||++|| +|+++ ++|||++||||+++||+.+
T Consensus 150 ~l~V~~~~~~~~~i~~~v~----~gG~l~s~Kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~ 225 (511)
T PLN02461 150 TLTVLSCDVEAGTVRCRCE----NSAMLGERKNVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEV 225 (511)
T ss_pred EEEEEEEecCCCEEEEEEe----cCcEecCCceeeecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHH
Confidence 99999987 578999885 7999999999999999999999999999998 79987 7999999999999999999
Q ss_pred HHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEE
Q 006783 481 RKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWA 560 (631)
Q Consensus 481 r~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~A 560 (631)
|++|.+.+ .++.|||||||++|++||+||+.++ |||||||||||+|+|+|+||.+||+|++.|+++|||||||
T Consensus 226 r~~l~~~~-~~~~IiAKIE~~~av~nl~eIi~~s------DgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvA 298 (511)
T PLN02461 226 RKVLGEHA-KSILLISKVENQEGLDNFDDILAES------DAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTA 298 (511)
T ss_pred HHHHHhCC-CCCCEEEEECCHHHHHHHHHHHHhc------CEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEe
Confidence 99998766 5899999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred echhhhhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 561 TQVLESLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 561 TQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
|||||||++||+|||||++||||| +|+|||||| +|+||+|||++|++|++++|..
T Consensus 299 TQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~ 359 (511)
T PLN02461 299 TQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVKTMARICREAEAS 359 (511)
T ss_pred ehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999 699999999 9999999999999999999963
No 8
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=3.7e-93 Score=781.26 Aligned_cols=330 Identities=32% Similarity=0.491 Sum_probs=306.3
Q ss_pred CCCCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhc-CCceEEEecCCCCeeeeeccC
Q 006783 167 HNQTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQML-EMPCQILMDLAGPKLRTGNLK 244 (631)
Q Consensus 167 ~~R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~-g~~~~IlmDL~GPKIRtG~i~ 244 (631)
..|+||||||+||++.+.+ |++|+++||||||||||||++++|+++|+++|++++++ +++|+|++||+|||||||.++
T Consensus 36 ~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~iaIl~Dl~GPkiR~g~~~ 115 (513)
T PTZ00066 36 RQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANLGILLDTKGPEIRTGFLK 115 (513)
T ss_pred cCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCceEEEeeCCCCceeecccC
Confidence 3589999999999999999 99999999999999999999999999999999999996 899999999999999999996
Q ss_pred CCCceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCcc
Q 006783 245 PGPCIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTE 324 (631)
Q Consensus 245 ~gp~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~ 324 (631)
+++. ..|++||.++|+..
T Consensus 116 ~~~~------------------------------------------------i~l~~G~~~~l~~~-------------- 133 (513)
T PTZ00066 116 NHKP------------------------------------------------ITLKEGQTLKITTD-------------- 133 (513)
T ss_pred CCCe------------------------------------------------EEeCCCCEEEEecC--------------
Confidence 5311 24778888888621
Q ss_pred ccccccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeE
Q 006783 325 LHRKGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKI 404 (631)
Q Consensus 325 ~~~~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI 404 (631)
... .++...|+|+|+++++.+++||+||+|||+|
T Consensus 134 --------------------------------------~~~--------~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i 167 (513)
T PTZ00066 134 --------------------------------------YTF--------LGDETCISCSYKKLPQSVKVGNIILIADGSL 167 (513)
T ss_pred --------------------------------------Ccc--------CCCCcEEecchHHHHhhccCCCEEEEeCCEE
Confidence 000 0124579999999999999999999999999
Q ss_pred EEEEEEEeCCEEEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhH-HHHHh-cCCEEEEeccCChhHHHHHHH
Q 006783 405 WGLIQGASISEIVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDL-EFVAS-HADMVGISFVRDSCDIAMLRK 482 (631)
Q Consensus 405 ~~~V~~v~~~~i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl-~f~~~-~~D~V~~SFV~sa~Dv~~lr~ 482 (631)
.++|.+++++.+.|+|. +||.|+++||||||++.+++|+||+||++|| +|+++ ++|||++||||+++||.++|+
T Consensus 168 ~l~V~~~~~~~v~~~v~----~gG~l~~~Kgvnlpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~ 243 (513)
T PTZ00066 168 SCKVLEVHDDYIITKVL----NNATIGERKNMNLPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQ 243 (513)
T ss_pred EEEEEEEECCEEEEEEE----eCcEEcCCcccccCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH
Confidence 99999999999999987 6999999999999999999999999999998 89998 599999999999999999999
Q ss_pred HHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEec
Q 006783 483 ELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQ 562 (631)
Q Consensus 483 ~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQ 562 (631)
+|++.| .++.|||||||++|++||+||+.++ |||||||||||+|+|+|+||.+||+||.+|+++|||||+|||
T Consensus 244 ~l~~~g-~~~~IiAKIE~~~av~NldeIl~~s------DGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQ 316 (513)
T PTZ00066 244 LLGERG-RHIKIIPKIENIEGLINFDEILAES------DGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQ 316 (513)
T ss_pred HHHhCC-CCceEEEEECCHHHHHHHHHHHHhc------CEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEech
Confidence 999877 5799999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 563 VLESLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 563 vLESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
|||||++||+|||||++||||| +|+||+||| .|+||+|||++|++|++++|..
T Consensus 317 mLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~G~yPveaV~~m~~I~~~aE~~ 375 (513)
T PTZ00066 317 MLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGKFPVEAVNIMAKICFEAETC 375 (513)
T ss_pred hHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcCCcCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999 699999997 9999999999999999999963
No 9
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-92 Score=769.83 Aligned_cols=334 Identities=34% Similarity=0.533 Sum_probs=312.3
Q ss_pred CCCCCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccC
Q 006783 166 RHNQTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLK 244 (631)
Q Consensus 166 ~~~R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~ 244 (631)
...|+|||+||+||++.+.+ |++|+++||||+|||||||++++|.+.++++|++++++|+|++||+||+|||||||.++
T Consensus 2 ~~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~~~vaIl~DlkGPkIR~g~~~ 81 (477)
T COG0469 2 RMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLGRPVAILLDLKGPKIRTGKFK 81 (477)
T ss_pred CCCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHhCCceEEEEcCCCCcceeEecC
Confidence 35699999999999999999 99999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCcc
Q 006783 245 PGPCIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTE 324 (631)
Q Consensus 245 ~gp~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~ 324 (631)
++.. .|+.||.++|+... .
T Consensus 82 ~~~~-------------------------------------------------~l~~G~~~~~~~~~-----~------- 100 (477)
T COG0469 82 GGAV-------------------------------------------------ELEKGEKFTLTTDD-----K------- 100 (477)
T ss_pred CCcE-------------------------------------------------EeecCCEEEEeccc-----c-------
Confidence 7432 57889999887320 0
Q ss_pred ccccccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeE
Q 006783 325 LHRKGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKI 404 (631)
Q Consensus 325 ~~~~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI 404 (631)
...| +..+++++|++++++|++|++||+|||+|
T Consensus 101 --------------------------~~~~---------------------~~~~v~v~y~~l~~dV~~G~~iLlDDG~i 133 (477)
T COG0469 101 --------------------------VGEG---------------------DEERVSVDYKDLAKDVKPGDRILLDDGKI 133 (477)
T ss_pred --------------------------ccCC---------------------CCcEEeccHHHHHhhcCCCCEEEEeCCee
Confidence 0000 13589999999999999999999999999
Q ss_pred EEEEEEEeCCEEEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHH
Q 006783 405 WGLIQGASISEIVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKE 483 (631)
Q Consensus 405 ~~~V~~v~~~~i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~ 483 (631)
.++|++++++.+.|+|+ +||.|+++||||+||+.+++|+||+||++||+|+++ ++|||++|||++++||..+|+.
T Consensus 134 ~l~V~~v~~~~v~~~v~----n~G~l~~~KgvN~pg~~l~~palteKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~ 209 (477)
T COG0469 134 ELRVVEVDGDAVITRVL----NGGVLSSNKGVNLPGVDLSLPALTEKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREI 209 (477)
T ss_pred EEEEEEeeCCEEEEEEE----eCCCccCCCceecCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHH
Confidence 99999999999999997 689999999999999999999999999999999998 7999999999999999999999
Q ss_pred HHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEech
Q 006783 484 LEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQV 563 (631)
Q Consensus 484 L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQv 563 (631)
|.+.++.+..||||||+++|++|||||+.++ |||||||||||+|+|+++||.+||+|++.|+.+|||||+||||
T Consensus 210 l~~~~~~~~~iiaKIE~~eav~NldeIi~~S------DGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQM 283 (477)
T COG0469 210 LAETGGRDVKIIAKIENQEAVDNLDEIIEAS------DGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQM 283 (477)
T ss_pred HHHhCCCCceEEEeecCHHHHhHHHHHHHhc------CceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeecc
Confidence 9998877899999999999999999999987 9999999999999999999999999999999999999999999
Q ss_pred hhhhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhccc
Q 006783 564 LESLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQMK 617 (631)
Q Consensus 564 LESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~~k 617 (631)
||||++||+|||||++||||| +|+||+||| .|+||+|||++|.+|+.+.|.+..
T Consensus 284 LeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~G~yPveaV~~M~~I~~~aE~~~~ 343 (477)
T COG0469 284 LESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVATMARIAKEAEKELP 343 (477)
T ss_pred HHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhcCCCHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999 799999999 999999999999999999997743
No 10
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=4.1e-92 Score=768.79 Aligned_cols=325 Identities=33% Similarity=0.526 Sum_probs=304.3
Q ss_pred CCCCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccCC
Q 006783 167 HNQTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLKP 245 (631)
Q Consensus 167 ~~R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~~ 245 (631)
+.|+|||||||||++.+.+ |++|+++||||||||||||++++|+++++++|++++++|++|+|++||+|||||||.+++
T Consensus 3 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~~~i~Il~Dl~GpkiR~g~~~~ 82 (476)
T PRK06247 3 RNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETGRPIGILADLQGPKLRLGRFAD 82 (476)
T ss_pred CCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeeEEEeCCCCceeccccCC
Confidence 3689999999999988888 999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCccc
Q 006783 246 GPCIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTEL 325 (631)
Q Consensus 246 gp~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~~ 325 (631)
++. .|++||.|.|+...
T Consensus 83 ~~i-------------------------------------------------~l~~G~~~~l~~~~-------------- 99 (476)
T PRK06247 83 GKV-------------------------------------------------QLANGQTFRLDVDD-------------- 99 (476)
T ss_pred CcE-------------------------------------------------eccCCCEEEEEecc--------------
Confidence 432 47888888886210
Q ss_pred cccccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeEE
Q 006783 326 HRKGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKIW 405 (631)
Q Consensus 326 ~~~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI~ 405 (631)
.. ++...|+|+++++++.+++||+|++|||+|.
T Consensus 100 --------------------------~~---------------------~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~ 132 (476)
T PRK06247 100 --------------------------AP---------------------GDHDRVSLPHPEIAAALKPGDRLLVDDGKVR 132 (476)
T ss_pred --------------------------cC---------------------CCCCEeecChhHhHhhcCCCCEEEEeCCeEE
Confidence 00 1245799999999999999999999999999
Q ss_pred EEEEEEeCCEEEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHH
Q 006783 406 GLIQGASISEIVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKEL 484 (631)
Q Consensus 406 ~~V~~v~~~~i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L 484 (631)
++|.+++++.+.|+|. +||.|+++||||||++.+++|+||+||++||+|+++ ++|||++|||++++||..+|++|
T Consensus 133 l~V~~~~~~~i~~~v~----~~G~l~~~Kgvn~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l 208 (476)
T PRK06247 133 LVVEACDGDDVVCRVV----EGGPVSDRKGVSLPGTVLSVSALTEKDRADLEFALELGVDWVALSFVQRPEDVEEVRKII 208 (476)
T ss_pred EEEEEEECCEEEEEEE----eCcEEcCCCccccCCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh
Confidence 9999999999999997 689999999999999999999999999999999998 69999999999999999999999
Q ss_pred HHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechh
Q 006783 485 EKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVL 564 (631)
Q Consensus 485 ~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvL 564 (631)
.+ ++.|||||||++|++||++|+.++ |||||||||||+|+|+++++.+|++|++.|+++|||||+|||||
T Consensus 209 ~~----~~~iiaKIEt~eav~nldeI~~~~------DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmL 278 (476)
T PRK06247 209 GG----RVPVMAKIEKPQAIDRLEAIVEAS------DAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQML 278 (476)
T ss_pred hh----cCeEEEEECCHHHHHhHHHHHHHc------CEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchH
Confidence 53 689999999999999999999986 99999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 565 ESLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 565 ESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
|||++||+|||||+||+||| +|+||+||| +|+||+|||++|++|++++|.+
T Consensus 279 eSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~ 335 (476)
T PRK06247 279 ESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYPVEAVRTMARIIRQVERD 335 (476)
T ss_pred HHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999 699999999 9999999999999999999974
No 11
>PLN02765 pyruvate kinase
Probab=100.00 E-value=1.5e-91 Score=769.57 Aligned_cols=327 Identities=25% Similarity=0.402 Sum_probs=303.3
Q ss_pred CCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccCCCC
Q 006783 169 QTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLKPGP 247 (631)
Q Consensus 169 R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~~gp 247 (631)
|+|||+|||||++.+.+ |++|+++||||||||||||++++|+++|++||++++++|++|+|++||+|||||||.+++++
T Consensus 28 ~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~~~ 107 (526)
T PLN02765 28 ALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNTKKLCAVMLDTVGPELQVINKTEKP 107 (526)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCceeeeecCCCc
Confidence 56999999999999999 99999999999999999999999999999999999999999999999999999999986433
Q ss_pred ceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCccccc
Q 006783 248 CIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTELHR 327 (631)
Q Consensus 248 ~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~~~~ 327 (631)
. .|++||+++|+...
T Consensus 108 i-------------------------------------------------~l~~G~~~~l~~~~---------------- 122 (526)
T PLN02765 108 I-------------------------------------------------SLKAGNTVTLTPDQ---------------- 122 (526)
T ss_pred E-------------------------------------------------ecCCCCEEEEeccc----------------
Confidence 2 47888888886310
Q ss_pred cccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCC-----
Q 006783 328 KGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDG----- 402 (631)
Q Consensus 328 ~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDG----- 402 (631)
. ..++...|+|+|+++++.+++||+|++|||
T Consensus 123 ------------------------------------~--------~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~~~g~ 158 (526)
T PLN02765 123 ------------------------------------S--------KEASSEVLPINFPGLAKAVKPGDTIFVGQYLFTGS 158 (526)
T ss_pred ------------------------------------c--------cCCCCCEEeechHHHHhhcCCCCEEEECCcccccc
Confidence 0 001235799999999999999999999988
Q ss_pred ---eEEEEEEEEeCCEEEEEEEecCCCCceecC-CceeecCCCcccCCCCChhcHHhH-HHHHh-cCCEEEEeccCChhH
Q 006783 403 ---KIWGLIQGASISEIVVSITHAGPRGTKLGS-GKSINIPKSNIHFEGLTTKDLMDL-EFVAS-HADMVGISFVRDSCD 476 (631)
Q Consensus 403 ---kI~~~V~~v~~~~i~~~V~~a~~~Gg~L~s-~KGINlP~~~l~lp~LTekD~~dl-~f~~~-~~D~V~~SFV~sa~D 476 (631)
+|.++|.+++++.+.|+|. +||.|++ +||||||++.+++|+||+||++|| .|+++ ++|||++||||+++|
T Consensus 159 ~dg~i~l~V~~~~~~~v~~~v~----~gG~L~s~~kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~D 234 (526)
T PLN02765 159 ETTSVWLEVDEVKGDDVVCTVK----NSATLAGSLFTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRHAED 234 (526)
T ss_pred cCceEEEEEEEEECCEEEEEEE----eCcEECCCccceeCCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCCHHH
Confidence 8999999999999999997 6899999 589999999999999999999999 69987 699999999999999
Q ss_pred HHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCC
Q 006783 477 IAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVP 556 (631)
Q Consensus 477 v~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkP 556 (631)
|..+|++|.+.|..++.|||||||++|++||+||+.++ |||||||||||+|+|+|+||.+||+|+++|+++|||
T Consensus 235 I~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eIi~~s------DgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKP 308 (526)
T PLN02765 235 VREAREFLSSLGLSQTQIFAKIENVEGLTHFDEILQEA------DGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKP 308 (526)
T ss_pred HHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHHHHHhc------CEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCC
Confidence 99999999988755899999999999999999999987 999999999999999999999999999999999999
Q ss_pred EEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 557 VIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 557 vi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
||+ |||||||++||+|||||+|||||| +|+|||||| +|+||+|||++|++|++++|..
T Consensus 309 VI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~yPveaV~~m~~I~~~aE~~ 372 (526)
T PLN02765 309 AVV-TRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGLYPVETISTVGRICAEAEKV 372 (526)
T ss_pred eEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 995 999999999999999999999999 699999999 9999999999999999999963
No 12
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=4.9e-91 Score=764.12 Aligned_cols=329 Identities=33% Similarity=0.502 Sum_probs=305.5
Q ss_pred CCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccCCCC
Q 006783 169 QTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLKPGP 247 (631)
Q Consensus 169 R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~~gp 247 (631)
|+|||||||||++.+.+ |++|+++||||||||||||++++|+++|++||++++++|++|+|++||+|||||||.+++++
T Consensus 2 ~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~~~i~il~Dl~GpkiR~g~~~~~~ 81 (480)
T cd00288 2 RRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTGGPVAIALDTKGPEIRTGLFKGGK 81 (480)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeecccCCCC
Confidence 89999999999988888 99999999999999999999999999999999999999999999999999999999996531
Q ss_pred ceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCccccc
Q 006783 248 CIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTELHR 327 (631)
Q Consensus 248 ~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~~~~ 327 (631)
. ..|++||.|+|+... .+
T Consensus 82 ~------------------------------------------------i~l~~G~~~~lt~~~-----~~--------- 99 (480)
T cd00288 82 D------------------------------------------------ISLKAGDKFLVTTDP-----AA--------- 99 (480)
T ss_pred c------------------------------------------------eecCCCCEEEEEecc-----cc---------
Confidence 1 257888888886310 00
Q ss_pred cccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeEEEE
Q 006783 328 KGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKIWGL 407 (631)
Q Consensus 328 ~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI~~~ 407 (631)
.. ++...|+|+++++++.+++||+|++|||+|.++
T Consensus 100 ------------------------~~---------------------~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~ 134 (480)
T cd00288 100 ------------------------KK---------------------GTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLK 134 (480)
T ss_pred ------------------------cC---------------------CCCcEEeechHHhHhhcCCCCEEEEeCCEEEEE
Confidence 00 124579999999999999999999999999999
Q ss_pred EEEEeCC-EEEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHH
Q 006783 408 IQGASIS-EIVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELE 485 (631)
Q Consensus 408 V~~v~~~-~i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~ 485 (631)
|++++++ .+.|+|. +||.|+++||||||+..+++|+||+||++||+|+++ ++|||++|||++++||+.+|+++.
T Consensus 135 V~~~~~~~~i~~~v~----~~G~l~~~kgin~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~ 210 (480)
T cd00288 135 VLSKDDDKTLVCEVL----NGGVLGSRKGVNLPGTDVDLPALSEKDKADLRFGVEQGVDMIFASFVRKASDVLEIREVLG 210 (480)
T ss_pred EEEEcCCceEEEEEE----eCeEEcCCCceEeeCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHH
Confidence 9999999 8999987 699999999999999999999999999999999998 599999999999999999999999
Q ss_pred HhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhh
Q 006783 486 KRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLE 565 (631)
Q Consensus 486 ~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLE 565 (631)
+.+ .++.||+||||++|++||++|++++ |||||||||||+|+|+++++.+|++|++.|+++||||||||||||
T Consensus 211 ~~~-~~~~iiakIEt~~av~nldeI~~~~------DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLe 283 (480)
T cd00288 211 EKG-KDIKIIAKIENQEGVNNFDEILEAS------DGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLE 283 (480)
T ss_pred hcC-CCceEEEEECCHHHHHhHHHHHHhc------CEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHH
Confidence 875 6899999999999999999999986 999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 566 SLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 566 SM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
||++||+|||||++|+||| +|+||+||| +|+||+|||++|++|++++|..
T Consensus 284 SM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~ 339 (480)
T cd00288 284 SMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEKA 339 (480)
T ss_pred HHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 699999996 9999999999999999999963
No 13
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=8.1e-91 Score=777.44 Aligned_cols=330 Identities=30% Similarity=0.460 Sum_probs=307.6
Q ss_pred CCCCCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccC
Q 006783 166 RHNQTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLK 244 (631)
Q Consensus 166 ~~~R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~ 244 (631)
...|+||||||+||++.+.+ |++|+++|||+||||||||++++|++++++||++++++|++|+|++||+|||||||.++
T Consensus 5 ~~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~ 84 (590)
T PRK06354 5 DLMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLGKTVGILQDLQGPKIRLGRFE 84 (590)
T ss_pred CCCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCceeccccC
Confidence 34689999999999999999 99999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCcc
Q 006783 245 PGPCIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTE 324 (631)
Q Consensus 245 ~gp~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~ 324 (631)
+++. .|++||.|.|+..
T Consensus 85 ~~~i-------------------------------------------------~l~~G~~~~l~~~-------------- 101 (590)
T PRK06354 85 DGPI-------------------------------------------------ELKTGDEFILTSR-------------- 101 (590)
T ss_pred CCcE-------------------------------------------------EecCCCEEEEEec--------------
Confidence 5432 4778888888621
Q ss_pred ccccccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeE
Q 006783 325 LHRKGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKI 404 (631)
Q Consensus 325 ~~~~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI 404 (631)
. ..++...|+|+|+++++.+++||.|++|||+|
T Consensus 102 --------------------------------------~---------~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i 134 (590)
T PRK06354 102 --------------------------------------E---------VLGTQEKFSVTYDGLADEVPVGSRILLDDGLI 134 (590)
T ss_pred --------------------------------------c---------cCCCCCEEeechHHHHhhcCCCCEEEEeCCeE
Confidence 0 00124579999999999999999999999999
Q ss_pred EEEEEEEe--CCEEEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHH
Q 006783 405 WGLIQGAS--ISEIVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLR 481 (631)
Q Consensus 405 ~~~V~~v~--~~~i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr 481 (631)
.++|.+++ ++.+.|+|. +||.|+++||||||++.+++|+||+||++||+|+++ ++|||++|||++++||.+++
T Consensus 135 ~l~V~~~~~~~~~v~~~v~----~~g~l~~~Kgvn~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r 210 (590)
T PRK06354 135 ELEVEEVDKADGELHCKVL----VGGVLSNKKGVNFPGVSLSLPAITEKDREDLIFGLEQGVDWIALSFVRNPSDVLEIR 210 (590)
T ss_pred EEEEEEEEcCCCEEEEEEE----eCeEECCCCcccccCCccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHH
Confidence 99999988 889999997 699999999999999999999999999999999997 69999999999999999999
Q ss_pred HHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEe
Q 006783 482 KELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWAT 561 (631)
Q Consensus 482 ~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~AT 561 (631)
+++.+.+..++.|||||||++|++||+||+.++ |||||||||||+|+|+++++.+|++|++.|+++|||||+||
T Consensus 211 ~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~------DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~AT 284 (590)
T PRK06354 211 ELIEEHNGKHIPIIAKIEKQEAIDNIDAILELC------DGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITAT 284 (590)
T ss_pred HHHHHhcCCCceEEEEECCHHHHHhHHHHHHhc------CEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 999665447899999999999999999999986 99999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 562 QVLESLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 562 QvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
||||||++||+|||||++||||| +|+||+||| +|+||+|||++|++|++++|++
T Consensus 285 qmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~ 344 (590)
T PRK06354 285 QMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGDYPVEAVQTMATIAVRIEKD 344 (590)
T ss_pred hhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999 799999999 9999999999999999999974
No 14
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=3.2e-89 Score=747.35 Aligned_cols=330 Identities=32% Similarity=0.503 Sum_probs=308.9
Q ss_pred CCCCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccCC
Q 006783 167 HNQTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLKP 245 (631)
Q Consensus 167 ~~R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~~ 245 (631)
+.|+||||||+||++.+.+ |++|+++||||||||||||++++|+++|++||++++++|+||+|++||+|||||||.+++
T Consensus 2 ~~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~~~~i~I~~Dl~GpkiR~g~~~~ 81 (465)
T PRK05826 2 MLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLGRPVAILLDLKGPKIRVGKFKE 81 (465)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeeccccC
Confidence 4589999999999999999 999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCccc
Q 006783 246 GPCIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTEL 325 (631)
Q Consensus 246 gp~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~~ 325 (631)
++. .|++||+|+|+..+ ..
T Consensus 82 ~~i-------------------------------------------------~l~~G~~v~l~~~~-------~~----- 100 (465)
T PRK05826 82 GKI-------------------------------------------------TLKTGDKFTLDTDQ-------KE----- 100 (465)
T ss_pred CcE-------------------------------------------------EecCCCEEEEEecc-------cc-----
Confidence 332 47889998887320 00
Q ss_pred cccccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeEE
Q 006783 326 HRKGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKIW 405 (631)
Q Consensus 326 ~~~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI~ 405 (631)
.| +...|+|+++++++++++||.||+|||+|.
T Consensus 101 ---------------------------~~---------------------~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~ 132 (465)
T PRK05826 101 ---------------------------EG---------------------DKERVGVDYKGLPKDVKPGDILLLDDGKLQ 132 (465)
T ss_pred ---------------------------CC---------------------CCCEEEechHHhHhhcCCCCEEEEeCCeEE
Confidence 01 245799999999999999999999999999
Q ss_pred EEEEEEeCCEEEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHH
Q 006783 406 GLIQGASISEIVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKEL 484 (631)
Q Consensus 406 ~~V~~v~~~~i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L 484 (631)
++|.+++++.+.|+|. +||.|+++||||||++.+++|+||++|.++|+|+++ ++|+|++|||++++|++.+++++
T Consensus 133 l~V~~~~~~~v~~~v~----~~g~l~s~kgvnlp~~~~~lp~lte~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l 208 (465)
T PRK05826 133 LKVVEVDGDEVETEVK----NGGPLSNNKGINIPGGGLSLPALTEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLL 208 (465)
T ss_pred EEEEEEeCCEEEEEEE----eCcEecCCceeeccCcccCCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
Confidence 9999999999999987 689999999999999999999999999999999998 69999999999999999999999
Q ss_pred HHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechh
Q 006783 485 EKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVL 564 (631)
Q Consensus 485 ~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvL 564 (631)
.+.+.+++.||+||||++|++||++|++++ |||||||||||+|+|+++++.+|++|+++|+++|||||+|||||
T Consensus 209 ~~~~~~~~~iiakIEt~eav~nldeI~~~~------DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmL 282 (465)
T PRK05826 209 REAGCPHAKIIAKIERAEAVDNIDEIIEAS------DGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQML 282 (465)
T ss_pred HHcCCcCceEEEEEcCHHHHHhHHHHHHHc------CEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 988743899999999999999999999986 99999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 565 ESLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 565 ESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
|||+++|+|||||++||||| +|+||+||| +|+||+|||++|++|++++|.+
T Consensus 283 eSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~ 339 (465)
T PRK05826 283 ESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKE 339 (465)
T ss_pred HHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999 699999999 9999999999999999999975
No 15
>PLN02623 pyruvate kinase
Probab=100.00 E-value=1.8e-88 Score=750.42 Aligned_cols=348 Identities=27% Similarity=0.425 Sum_probs=323.7
Q ss_pred hhHhHHhHHHHhHHhhcCCCCCCCCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhc-
Q 006783 146 MIQALGKKLSANKELLLGPLRHNQTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQML- 223 (631)
Q Consensus 146 ~~~~~~~~L~~~~~~l~G~~~~~R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~- 223 (631)
.+..+.++|..++..+||.+...|+|||||||||++.+.+ |++|+++||||||||||||++++|+++|++||+++++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~RlNfSHg~~e~h~~~i~~vr~~~~~~~ 166 (581)
T PLN02623 87 EVLLEIQQLGETAVGMWSKPSVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSK 166 (581)
T ss_pred cccchhhHHHhhhhhhcCCCCCCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3444558999999999999999999999999999999999 99999999999999999999999999999999999986
Q ss_pred CCceEEEecCCCCeeeeeccCCCCceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCC
Q 006783 224 EMPCQILMDLAGPKLRTGNLKPGPCIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGH 303 (631)
Q Consensus 224 g~~~~IlmDL~GPKIRtG~i~~gp~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd 303 (631)
+++++|++||+|||||||.+.. |. .|++||
T Consensus 167 ~~~iaIl~Dl~GPkIRig~~~~-~i-------------------------------------------------~l~~G~ 196 (581)
T PLN02623 167 DNVIAIMLDTKGPEVRSGDLPQ-PI-------------------------------------------------MLEEGQ 196 (581)
T ss_pred CCceEEEecCCCCceecccCCC-CE-------------------------------------------------EecCCC
Confidence 5999999999999999999853 22 478899
Q ss_pred EEEEeccccccchhhhccCccccccccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeC
Q 006783 304 ILKFSDARECSRTAYVQSGTELHRKGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCS 383 (631)
Q Consensus 304 ~v~l~d~r~~~~~~y~~~gt~~~~~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct 383 (631)
.|.|+..+ ..| +...|+++
T Consensus 197 ~v~lt~~~----------------------------------------~~g---------------------~~~~i~v~ 215 (581)
T PLN02623 197 EFTFTIKR----------------------------------------GVS---------------------TEDCVSVN 215 (581)
T ss_pred EEEEecCc----------------------------------------cCC---------------------CCCEEeec
Confidence 98886310 001 24579999
Q ss_pred chhhhcccCCCCcEEEeCCeEEEEEEEEeCCEEEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHHHh-c
Q 006783 384 SSCLFDSVKPGEPIAFDDGKIWGLIQGASISEIVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVAS-H 462 (631)
Q Consensus 384 ~p~l~~~v~~Gd~I~iDDGkI~~~V~~v~~~~i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~~-~ 462 (631)
|+++++++++||.||+|||+|.++|.+++++.+.|+|. +||.|+++||||||++.+++|+|||||++||+|+++ +
T Consensus 216 y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~V~----~gG~L~s~KgvNlpg~~~~lp~lTekD~~di~f~~~~~ 291 (581)
T PLN02623 216 YDDFVNDVEVGDMLLVDGGMMSLAVKSKTSDSVKCEVV----DGGELKSRRHLNVRGKSATLPSITEKDWEDIKFGVENK 291 (581)
T ss_pred hHHHHhhCCCCCEEEEeCCeEEEEEEEEECCEEEEEEE----eceEecCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999997 699999999999999999999999999999999998 6
Q ss_pred CCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHH
Q 006783 463 ADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADM 542 (631)
Q Consensus 463 ~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~ 542 (631)
+|||++|||++++||++++++++..+ .++.||+||||++|++||+||+.. +|||||||||||+|+|+++++.+
T Consensus 292 vD~ialSFVr~a~DV~~~r~~l~~~~-~~~~iiakIEt~eaVeNldeIl~g------~DgImIgrgDLgvelg~~~v~~~ 364 (581)
T PLN02623 292 VDFYAVSFVKDAQVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIITA------SDGAMVARGDLGAELPIEEVPLL 364 (581)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHcC-CcceEEEEECCHHHHHhHHHHHHh------CCEEEECcchhhhhcCcHHHHHH
Confidence 99999999999999999999999876 679999999999999999999984 49999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 543 QEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 543 Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
|++|++.|+++|||||+||||||||+.++.|||||++|++|+ +|+||+||+ .|+||+|||++|++|++++|+.
T Consensus 365 qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~ 443 (581)
T PLN02623 365 QEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEAT 443 (581)
T ss_pred HHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999 699999999 8999999999999999999964
No 16
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=2.3e-83 Score=697.92 Aligned_cols=304 Identities=30% Similarity=0.468 Sum_probs=280.3
Q ss_pred CCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccCCCCceeccCCCCCCCCccccCcccccccC
Q 006783 194 ASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLKPGPCIIKISPKKNATGNVILPSQVWLSHK 273 (631)
Q Consensus 194 MdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~~gp~v~~~~p~rd~~G~v~~pa~~wl~~~ 273 (631)
|||||||||||++++|+++|++||++++++|++|+|++||+|||||||.+.+++.
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~~~~i~il~Dl~GPkiR~g~~~~~~~------------------------- 55 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGLFVGGEA------------------------- 55 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeccccCCCcE-------------------------
Confidence 8999999999999999999999999999999999999999999999999965432
Q ss_pred CCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCccccccccccccCCcccccCCCCccceeccc
Q 006783 274 DAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTELHRKGKKIRFPAAQVVDVPAVEPFIRLRV 353 (631)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~~~~~g~~~~~~~~~~~~~p~~~~~i~l~~ 353 (631)
.|++||++.|+.. ..|..
T Consensus 56 ------------------------~l~~G~~~~l~~~-----~~~~~--------------------------------- 73 (454)
T PTZ00300 56 ------------------------VMERGATCYVTTD-----PAFAD--------------------------------- 73 (454)
T ss_pred ------------------------EecCCCEEEEEec-----ccccc---------------------------------
Confidence 5788998888631 00000
Q ss_pred CceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeEEEEEEEEeC-CEEEEEEEecCCCCceecC
Q 006783 354 GDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKIWGLIQGASI-SEIVVSITHAGPRGTKLGS 432 (631)
Q Consensus 354 Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI~~~V~~v~~-~~i~~~V~~a~~~Gg~L~s 432 (631)
.++...|+++|+++++.+++||.|++|||+|.++|.++++ +.+.|+|. +||.|++
T Consensus 74 --------------------~~~~~~i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~~~~~~v~~~v~----~gG~l~~ 129 (454)
T PTZ00300 74 --------------------KGTKDKFYIDYQNLSKVVRPGGYIYIDDGILILHVQSHEDEQTLKCTVT----NAHTISD 129 (454)
T ss_pred --------------------CCCCCEEEecCcccccccCCCCEEEEeCCeEEEEEEEEcCCceEEEEEe----cCcEecC
Confidence 0124579999999999999999999999999999999886 58999986 6999999
Q ss_pred CceeecCCCcccCCCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHH
Q 006783 433 GKSINIPKSNIHFEGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHIL 511 (631)
Q Consensus 433 ~KGINlP~~~l~lp~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl 511 (631)
+||||||++.+++|.||++|.++|+|+++ ++|+|++|||++++|++.+++++++.+ .++.|||||||++|++||++|+
T Consensus 130 ~kgvnlp~~~~~l~~ltekD~~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~-~~~~IiaKIEt~eav~nldeI~ 208 (454)
T PTZ00300 130 RRGVNLPGCDVDLPAVSAKDCADLQFGVEQGVDMIFASFIRSAEQVGEVRKALGAKG-GDIMIICKIENHQGVQNIDSII 208 (454)
T ss_pred CCccccCCCccCCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcC-CCceEEEEECCHHHHHhHHHHH
Confidence 99999999999999999999999999998 699999999999999999999998776 6899999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCc
Q 006783 512 LEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASC 589 (631)
Q Consensus 512 ~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~ 589 (631)
..+ |||||||||||+|+|+++++.+|++|++.|+++|||||+||||||||++||+|||||++||||| +|+||
T Consensus 209 ~~~------DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~Da 282 (454)
T PTZ00300 209 EES------DGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADC 282 (454)
T ss_pred HhC------CEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcE
Confidence 655 9999999999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred cccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 590 VMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 590 vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
+||| +|+||+|||++|++|++++|.+
T Consensus 283 vMLS~ETA~G~yP~eaV~~m~~I~~~aE~~ 312 (454)
T PTZ00300 283 VMLSGETAKGKYPNEVVQYMARICLEAQSA 312 (454)
T ss_pred EEEechhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 9997 9999999999999999999964
No 17
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=5.8e-83 Score=701.52 Aligned_cols=329 Identities=33% Similarity=0.528 Sum_probs=305.4
Q ss_pred CCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeeccCCCC
Q 006783 169 QTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNLKPGP 247 (631)
Q Consensus 169 R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~~gp 247 (631)
|+||||||+||++.+.+ |++|+++||||||||||||++++|+++|++||++++++|++|+|++||+|||||||.+.+++
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~~~~~i~~Dl~GpkiR~g~~~~~~ 80 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLGRPVAILLDTKGPEIRTGEIKGGP 80 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeccccCCCc
Confidence 68999999999999999 99999999999999999999999999999999999999999999999999999999996532
Q ss_pred ceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhccCccccc
Q 006783 248 CIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQSGTELHR 327 (631)
Q Consensus 248 ~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~gt~~~~ 327 (631)
. .|++||.|.|+... .|
T Consensus 81 ~-------------------------------------------------~l~~g~~v~l~~~~-----~~--------- 97 (473)
T TIGR01064 81 V-------------------------------------------------KLKKGDKVIITTDD-----IK--------- 97 (473)
T ss_pred e-------------------------------------------------ecCCCCEEEEeccc-----cc---------
Confidence 2 47889988886310 00
Q ss_pred cccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeEEEE
Q 006783 328 KGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKIWGL 407 (631)
Q Consensus 328 ~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI~~~ 407 (631)
..| +...|+|++|++++.+++||.|++|||+|.++
T Consensus 98 ------------------------~~~---------------------~~~~i~~~~~~~~~~~~~g~~i~iddG~i~l~ 132 (473)
T TIGR01064 98 ------------------------GEG---------------------DEEDVSVDYKGLTKDVSEGDKILVDDGKISLV 132 (473)
T ss_pred ------------------------CCC---------------------CCCEEEechHHHHHhcCCCCEEEEeCCeEEEE
Confidence 001 23579999999999999999999999999999
Q ss_pred EEEEeCCEEEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHH
Q 006783 408 IQGASISEIVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEK 486 (631)
Q Consensus 408 V~~v~~~~i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~ 486 (631)
|++++++.+.|+|. +||.|+++||||||++.+++|+||+||.+||.|+++ ++|+|++|||++++||..++++|.+
T Consensus 133 V~~~~~~~~~~~v~----~~g~l~~~kgvn~p~~~~~~~~ltekD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~ 208 (473)
T TIGR01064 133 VVSVEGDKVICEVL----NGGTLKSKKGVNLPGADVDLPALSEKDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREVLGE 208 (473)
T ss_pred EEEEECCEEEEEEE----eCcEEcCCceeecCCCccCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 99999999999987 689999999999999999999999999999999998 5999999999999999999999987
Q ss_pred hCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhh
Q 006783 487 RKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLES 566 (631)
Q Consensus 487 ~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLES 566 (631)
.+..++.||+||||++|++|+++|+.++ ||||||||||++++|.++++.+|++|+.+|+++|||+|+|||||||
T Consensus 209 ~~~~~~~Iia~IEt~~av~nl~eI~~~~------dgi~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeS 282 (473)
T TIGR01064 209 KGAKDVKIIAKIENQEGVDNIDEIAEAS------DGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDS 282 (473)
T ss_pred cCCCCceEEEEECCHHHHHhHHHHHhhC------CcEEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhh
Confidence 6534799999999999999999999765 9999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 567 LVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 567 M~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
|+.||+|||||++|++|+ +|+||+||+ .|+||+|||++|++|++++|.+
T Consensus 283 M~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~ 337 (473)
T TIGR01064 283 MIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKA 337 (473)
T ss_pred hhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999 699999997 8999999999999999999975
No 18
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-77 Score=645.59 Aligned_cols=333 Identities=35% Similarity=0.552 Sum_probs=309.4
Q ss_pred CCCCCCCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCc-eEEEecCCCCeeeee
Q 006783 164 PLRHNQTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMP-CQILMDLAGPKLRTG 241 (631)
Q Consensus 164 ~~~~~R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~-~~IlmDL~GPKIRtG 241 (631)
.+.-.|+|+|+||+||.+++.+ |++|+++|||+||+|||||++++|++.++|+|.+...++.. |+|++|++||+||||
T Consensus 16 ~~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~~~~~~~~ai~LDtkGpEirtg 95 (501)
T KOG2323|consen 16 APKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNTGALPCAIMLDTKGPEIRTG 95 (501)
T ss_pred ccccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHhhcCCcchhhhhccCCCeEeec
Confidence 4556689999999999999999 99999999999999999999999999999999999998766 999999999999999
Q ss_pred ccCCCCceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCceeeccchhhhhhccCCCEEEEeccccccchhhhcc
Q 006783 242 NLKPGPCIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAVLFIDDKKFLSELQVGHILKFSDARECSRTAYVQS 321 (631)
Q Consensus 242 ~i~~gp~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gd~v~l~d~r~~~~~~y~~~ 321 (631)
.+..+.. .+|+.|.+++|+.+. .|..+
T Consensus 96 ~~~~~~~------------------------------------------------i~L~~G~~i~~t~d~-----~~~~~ 122 (501)
T KOG2323|consen 96 DLKNGKP------------------------------------------------IKLKEGQEITITTDY-----SYEAK 122 (501)
T ss_pred ccCCCCc------------------------------------------------eeecCCCEEEEEcCh-----hhccc
Confidence 9976521 368899999998531 11100
Q ss_pred CccccccccccccCCcccccCCCCccceecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeC
Q 006783 322 GTELHRKGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDD 401 (631)
Q Consensus 322 gt~~~~~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDD 401 (631)
....++.+|..+..+|++|+.|++||
T Consensus 123 ------------------------------------------------------~~~~~~vdyk~~~~~V~~G~~i~vdd 148 (501)
T KOG2323|consen 123 ------------------------------------------------------LSETISVDYKKLAKDVKPGDIIYVDD 148 (501)
T ss_pred ------------------------------------------------------cceEEEeehHHhhhccccCCEEEECC
Confidence 12468899999999999999999999
Q ss_pred CeEEEEEEEEeCCEEEEEEEecCCCCceecCCce-eecCCCcccCCCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHH
Q 006783 402 GKIWGLIQGASISEIVVSITHAGPRGTKLGSGKS-INIPKSNIHFEGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAM 479 (631)
Q Consensus 402 GkI~~~V~~v~~~~i~~~V~~a~~~Gg~L~s~KG-INlP~~~l~lp~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~ 479 (631)
|-+.++|.++..+.+.|+|. +||.|+|+|| +|+|++..++|+|||||.+||+|+++ ++|+|++||||.++|+.+
T Consensus 149 gi~s~~V~~~~~~~~~c~v~----n~g~l~s~k~~vnlpg~~vdlp~ltekd~~dl~fGven~vd~i~~SfIR~a~dv~~ 224 (501)
T KOG2323|consen 149 GLISLIVKSVSKDEVTCRVE----NGGMLGSRKGNVNLPGTHVDLPALTEKDEKDLKFGVENKVDMIFASFIRKASDVRE 224 (501)
T ss_pred ceeeeEEEEeecCceEEEEe----cCcccccccCcccCCCccccCCccChhhHHHHhcCCCCCCCEEEeeeeeehHHHHH
Confidence 99999999999889999986 7899999999 99999999999999999999999998 599999999999999999
Q ss_pred HHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEE
Q 006783 480 LRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 480 lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
+|+.|++.| .++.||+|||+.+|+.|||+|+.++ ||+||||||||+|+|.|+++.+||.||.+|+.+|||||+
T Consensus 225 iR~~Lg~~g-~~ikiisKIEn~~g~~nfDeIl~~s------Dg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~ 297 (501)
T KOG2323|consen 225 VRKVLGESG-KNIKLISKIENQEGVSNFDEILIES------DGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVIC 297 (501)
T ss_pred HHHHhCccC-CcceEEEEechhhhhccHHHHHHhc------CceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEE
Confidence 999999776 7899999999999999999999987 999999999999999999999999999999999999999
Q ss_pred EechhhhhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhh
Q 006783 560 ATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTA 614 (631)
Q Consensus 560 ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~ 614 (631)
||||||||+.+|+|||||++||+|| +|+|||||+ +|+||++||++|..||.+.|.
T Consensus 298 atqmleSm~~kprPtRaE~SDVanAVLdg~D~vmLsgEta~G~yP~~av~~m~~i~~~aE~ 358 (501)
T KOG2323|consen 298 ATQMLESMIVKPRPTRAEASDVANAVLDGADCVMLSGETAKGKYPVEAVKTMARICKEAEA 358 (501)
T ss_pred ehhhHHhhccCCCCCccchHHHHHHHhccCceEEeccchhcCcCcHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999 799999999 999999999999999999986
No 19
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.43 E-value=5.9e-13 Score=136.73 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=94.0
Q ss_pred CCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHH--------------------------HHHhCCCCceEEEeec
Q 006783 447 GLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKE--------------------------LEKRKVQNLGVVLKIE 499 (631)
Q Consensus 447 ~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~--------------------------L~~~~~~~~~IiaKIE 499 (631)
.+...|...|+.+++ +++.|.+++|+|++|++.+.+. ++..+ +++.++++||
T Consensus 68 Rvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n-~~~~vi~~IE 146 (249)
T TIGR03239 68 RPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATIN-DNITVLVQIE 146 (249)
T ss_pred ECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhc-cccEEEEEEC
Confidence 344567888999998 8999999999999999998643 33333 5789999999
Q ss_pred ChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccCh------hhHHHHHHHHHHHHHhcCCCEEE
Q 006783 500 TKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGW------ERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 500 t~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~------e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
|++|++|+++|+++. ++|++|||++||+.++|. +.+..+.++++..|+++|||+++
T Consensus 147 t~~av~n~~eI~av~----gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~ 208 (249)
T TIGR03239 147 SQKGVDNVDEIAAVD----GVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGI 208 (249)
T ss_pred CHHHHHhHHHHhCCC----CCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999765 799999999999999996 47888889999999999999985
No 20
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.43 E-value=5.5e-13 Score=137.43 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=94.7
Q ss_pred CCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHH--------------------------HHHHhCCCCceEEEee
Q 006783 446 EGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRK--------------------------ELEKRKVQNLGVVLKI 498 (631)
Q Consensus 446 p~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~--------------------------~L~~~~~~~~~IiaKI 498 (631)
-.+...|...|+.+++ +++.|.+++|+|+++++.+.+ +++..+ +++.++++|
T Consensus 74 VRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an-~~~~vi~~I 152 (256)
T PRK10558 74 VRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSN-KNITVLVQI 152 (256)
T ss_pred EECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhc-cccEEEEEE
Confidence 3455678888999998 799999999999999999854 333333 578999999
Q ss_pred cChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccCh------hhHHHHHHHHHHHHHhcCCCEEE
Q 006783 499 ETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGW------ERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 499 Et~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~------e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
||++|++|+++|+++. ++|++|||++||+.++|. +.+..+..+++..|+++|||+++
T Consensus 153 Et~~av~ni~eI~av~----gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~ 215 (256)
T PRK10558 153 ESQQGVDNVDAIAATE----GVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGI 215 (256)
T ss_pred CCHHHHHHHHHHhCCC----CCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEE
Confidence 9999999999999765 799999999999999986 47888899999999999999985
No 21
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.33 E-value=5.4e-12 Score=130.92 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=93.0
Q ss_pred hhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHH-----HhC---------------------CCCceEEEeecChh
Q 006783 450 TKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELE-----KRK---------------------VQNLGVVLKIETKS 502 (631)
Q Consensus 450 ekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~-----~~~---------------------~~~~~IiaKIEt~~ 502 (631)
..|...++.+++ +++.|.+++|+|+++++.+.+..+ .|| .+++.+|++|||++
T Consensus 77 ~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~ 156 (267)
T PRK10128 77 EGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKT 156 (267)
T ss_pred CCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHH
Confidence 456677889998 899999999999999999887653 111 24789999999999
Q ss_pred hhcchHHHHHHhhcCCCCcEEEEecCCcccccCh------hhHHHHHHHHHHHHHhcCCCEEE
Q 006783 503 GFERLPHILLEAMKSSNPLGVMIARGDLAVECGW------ERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 503 av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~------e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
|++|+++|+++. |+|+|+|+++||+.++|+ +++.++.+++++.|+++|||+++
T Consensus 157 a~~n~~~I~~~~----gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~ 215 (267)
T PRK10128 157 ALDNLDEILDVE----GIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGF 215 (267)
T ss_pred HHHhHHHHhCCC----CCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE
Confidence 999999999875 899999999999999996 68889999999999999999985
No 22
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=6e-12 Score=126.94 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=96.1
Q ss_pred CCCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHH---------------------------HhCCCCceEEE
Q 006783 445 FEGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELE---------------------------KRKVQNLGVVL 496 (631)
Q Consensus 445 lp~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~---------------------------~~~~~~~~Iia 496 (631)
+-..+.-|...|+.+++ ++--+.+++|+|+++.+.+-+..+ .. ++++++++
T Consensus 71 vVR~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~A-n~~~~~lv 149 (255)
T COG3836 71 VVRPPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQA-NDEICLLV 149 (255)
T ss_pred eeeCCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhc-ccceEEEE
Confidence 34455677888899998 899999999999999999875542 22 36899999
Q ss_pred eecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccCh------hhHHHHHHHHHHHHHhcCCCEEE
Q 006783 497 KIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGW------ERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 497 KIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~------e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
+|||++|++|||+|+.+. |+|||||+++||+..+|+ ++|.++.+.++.+.+++||..++
T Consensus 150 qiEtr~gl~nLDaIaave----GVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagi 214 (255)
T COG3836 150 QIETRAGLDNLDAIAAVE----GVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGI 214 (255)
T ss_pred EEccHHHHHHHHHHHccC----CCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCcccc
Confidence 999999999999999998 999999999999999998 57888888899999999999986
No 23
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.27 E-value=1.4e-11 Score=126.43 Aligned_cols=127 Identities=19% Similarity=0.181 Sum_probs=100.9
Q ss_pred hcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHH-----hCC---------------------CCceEEEeecChhh
Q 006783 451 KDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEK-----RKV---------------------QNLGVVLKIETKSG 503 (631)
Q Consensus 451 kD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~-----~~~---------------------~~~~IiaKIEt~~a 503 (631)
.|..+|..+++ ++|.|.+++|+|+++++.+.+.++. ++. +++.+|++|||++|
T Consensus 72 ~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~a 151 (249)
T TIGR02311 72 GDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREA 151 (249)
T ss_pred CCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHH
Confidence 34457889998 7999999999999999999988762 211 15789999999999
Q ss_pred hcchHHHHHHhhcCCCCcEEEEecCCcccccCh------hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhh
Q 006783 504 FERLPHILLEAMKSSNPLGVMIARGDLAVECGW------ERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAE 577 (631)
Q Consensus 504 v~NL~eIl~~a~~~~~~DGImIaRGDL~veig~------e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAE 577 (631)
++|+++|+++. ++|++|+|++||+.++|. +++..+.+++...|+.++|+.++.. +.|..++
T Consensus 152 v~n~~eI~a~~----gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~~---------~~~~~~~ 218 (249)
T TIGR02311 152 LDNLEEIAAVE----GVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILT---------ADPKLAR 218 (249)
T ss_pred HHHHHHHHCCC----CCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeecC---------CCHHHHH
Confidence 99999999765 899999999999999997 4667778889999999999998622 1222222
Q ss_pred HHhhhhccccCccccc
Q 006783 578 ITDVASARRASCVMLN 593 (631)
Q Consensus 578 vtDva~a~gaD~vmLs 593 (631)
.+...|+..++++
T Consensus 219 ---~~~~~G~~~~~~~ 231 (249)
T TIGR02311 219 ---QYLKLGALFVAVG 231 (249)
T ss_pred ---HHHHcCCCEEEEc
Confidence 4445687766665
No 24
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.25 E-value=7.3e-12 Score=125.46 Aligned_cols=102 Identities=23% Similarity=0.221 Sum_probs=84.7
Q ss_pred HHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhC------CCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEE
Q 006783 453 LMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRK------VQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMI 525 (631)
Q Consensus 453 ~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~------~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImI 525 (631)
.+||+ ++. ++|.|.++.|++++|++.+.+.++... ..++.++++|||++||+|+++|++.. ++|++++
T Consensus 75 ~~Dl~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~----~v~~l~~ 149 (221)
T PF03328_consen 75 ERDLE-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVP----GVDGLFF 149 (221)
T ss_dssp HHHHH-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTST----TEEEEEE
T ss_pred hhhhh-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccC----CeeEEEe
Confidence 34566 676 799999999999999999999987542 24689999999999999999999544 8999999
Q ss_pred ecCCcccccCh------hhHHHHHHHHHHHHHhcCCCEEE
Q 006783 526 ARGDLAVECGW------ERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 526 aRGDL~veig~------e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
|++||+.++|. +.+..+..+|+..|+++|||+|-
T Consensus 150 G~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~ 189 (221)
T PF03328_consen 150 GPADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAID 189 (221)
T ss_dssp -HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CcHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEE
Confidence 99999999998 46889999999999999997653
No 25
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=98.90 E-value=5.3e-09 Score=109.61 Aligned_cols=105 Identities=22% Similarity=0.235 Sum_probs=89.2
Q ss_pred hcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhC------CCCceEEEeecChhhhcchHHHHHHhhcCCCCcEE
Q 006783 451 KDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRK------VQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGV 523 (631)
Q Consensus 451 kD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~------~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGI 523 (631)
.-..||..++. ++|.|.++.|++++|+..+.+.+.... ..++.+++.|||++|+.|+++|+.. .++++|+
T Consensus 73 ~~~~di~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a---~~rv~~l 149 (288)
T TIGR01588 73 FGLADIKAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARA---SKRLMGI 149 (288)
T ss_pred hHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhc---CCcceEE
Confidence 34566777776 799999999999999999998886421 1358899999999999999999953 2478999
Q ss_pred EEecCCcccccCh------hhHHHHHHHHHHHHHhcCCCEE
Q 006783 524 MIARGDLAVECGW------ERLADMQEEILSICGAAHVPVI 558 (631)
Q Consensus 524 mIaRGDL~veig~------e~l~~~Qk~Ii~~c~aagkPvi 558 (631)
++|..||+.++|. +.+..+..+|+..|+++|+|+|
T Consensus 150 ~~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~i 190 (288)
T TIGR01588 150 ALGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAF 190 (288)
T ss_pred EeCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcc
Confidence 9999999999986 3588888999999999999986
No 26
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=98.80 E-value=2.5e-08 Score=117.46 Aligned_cols=129 Identities=17% Similarity=0.101 Sum_probs=100.6
Q ss_pred hcHHhHHHHHh--cCCE--EEEeccCChhHHHHHHHHHHHhCC----CCceEEEeecChhhhcchHHHHHHhhcCCCCcE
Q 006783 451 KDLMDLEFVAS--HADM--VGISFVRDSCDIAMLRKELEKRKV----QNLGVVLKIETKSGFERLPHILLEAMKSSNPLG 522 (631)
Q Consensus 451 kD~~dl~f~~~--~~D~--V~~SFV~sa~Dv~~lr~~L~~~~~----~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DG 522 (631)
-.++.|..++. +++- |.++||+++++++.+++.++..+. +++.++++|||++|+.|+|+|+++. |+
T Consensus 621 ~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~v------Df 694 (795)
T PRK06464 621 LECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYF------DG 694 (795)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhC------CE
Confidence 34455556665 4667 999999999999999999986643 3689999999999999999999875 99
Q ss_pred EEEecCCcccc-cCh---------------hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccc
Q 006783 523 VMIARGDLAVE-CGW---------------ERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARR 586 (631)
Q Consensus 523 ImIaRGDL~ve-ig~---------------e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~g 586 (631)
++||+.||+.. +|. +.+-.+.+++++.|+++|||+.++.++. +. ..+........|
T Consensus 695 i~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a------~~--~p~~~~~l~~~G 766 (795)
T PRK06464 695 FSIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAP------SD--HPDFAEWLVEEG 766 (795)
T ss_pred EEECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCC------CC--cHHHHHHHHHCC
Confidence 99999999974 442 6888899999999999999999876543 12 123333555578
Q ss_pred cCccccc
Q 006783 587 ASCVMLN 593 (631)
Q Consensus 587 aD~vmLs 593 (631)
++.+..+
T Consensus 767 ~~~ls~~ 773 (795)
T PRK06464 767 IDSISLN 773 (795)
T ss_pred CCEEEEc
Confidence 8766554
No 27
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=98.71 E-value=6.3e-08 Score=113.97 Aligned_cols=129 Identities=17% Similarity=0.100 Sum_probs=99.6
Q ss_pred hhcHHhHHHHH-h-cCCE--EEEeccCChhHHHHHHHHHHHhCC----CCceEEEeecChhhhcchHHHHHHhhcCCCCc
Q 006783 450 TKDLMDLEFVA-S-HADM--VGISFVRDSCDIAMLRKELEKRKV----QNLGVVLKIETKSGFERLPHILLEAMKSSNPL 521 (631)
Q Consensus 450 ekD~~dl~f~~-~-~~D~--V~~SFV~sa~Dv~~lr~~L~~~~~----~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~D 521 (631)
.-.++.|..++ + ++.- |.++||+++++++.+++.++..+. +++.++++|||++|+.|+|+|+++. |
T Consensus 613 ~~qlraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~v------D 686 (782)
T TIGR01418 613 RLECRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEF------D 686 (782)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhC------C
Confidence 34455556666 3 5667 999999999999999999986542 2389999999999999999999874 9
Q ss_pred EEEEecCCccc-ccCh---------------hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCC-hhhHHhhhhc
Q 006783 522 GVMIARGDLAV-ECGW---------------ERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPT-RAEITDVASA 584 (631)
Q Consensus 522 GImIaRGDL~v-eig~---------------e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~Pt-RAEvtDva~a 584 (631)
+|+||+.||+. .+|. +.|-.+.++++..|+++|||+.++.++- + ..+..-....
T Consensus 687 fisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~---------~~~p~~~~~l~~ 757 (782)
T TIGR01418 687 GFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAP---------SDYPEVVEFLVE 757 (782)
T ss_pred EEEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCC---------CCCHHHHHHHHH
Confidence 99999999997 4432 6888999999999999999999876422 1 1122224445
Q ss_pred cccCccccc
Q 006783 585 RRASCVMLN 593 (631)
Q Consensus 585 ~gaD~vmLs 593 (631)
.|++.+..+
T Consensus 758 ~G~~~ls~~ 766 (782)
T TIGR01418 758 EGIDSISLN 766 (782)
T ss_pred cCCCEEEEC
Confidence 688766654
No 28
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=98.62 E-value=1.7e-07 Score=106.73 Aligned_cols=133 Identities=15% Similarity=0.076 Sum_probs=101.9
Q ss_pred CCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHh-------C---CCCceEEEeecChhhhcchHHHHHHh
Q 006783 446 EGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKR-------K---VQNLGVVLKIETKSGFERLPHILLEA 514 (631)
Q Consensus 446 p~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~-------~---~~~~~IiaKIEt~~av~NL~eIl~~a 514 (631)
|.|=...++.|..+.. +...|.++||+++++++.+++.++.. + ..++.+.++|||+.|+.|+++|+..
T Consensus 366 ~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~- 444 (565)
T TIGR01417 366 EEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKE- 444 (565)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhh-
Confidence 4444555566666776 68999999999999999999888741 1 2468999999999999999999873
Q ss_pred hcCCCCcEEEEecCCcccc----------cCh------hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhH
Q 006783 515 MKSSNPLGVMIARGDLAVE----------CGW------ERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEI 578 (631)
Q Consensus 515 ~~~~~~DGImIaRGDL~ve----------ig~------e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEv 578 (631)
+|+++||..||+.. +|. +.|..+.++++..|+++||||.++.++- +.| +.
T Consensus 445 -----vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a------~~p---~~ 510 (565)
T TIGR01417 445 -----VDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMA------GDE---RA 510 (565)
T ss_pred -----CCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcC------CCH---HH
Confidence 59999999999973 553 6888999999999999999999765432 122 33
Q ss_pred HhhhhccccCccccc
Q 006783 579 TDVASARRASCVMLN 593 (631)
Q Consensus 579 tDva~a~gaD~vmLs 593 (631)
.-.....|++.+..+
T Consensus 511 ~~~l~~~G~~~lsv~ 525 (565)
T TIGR01417 511 IPLLLGLGLRELSMS 525 (565)
T ss_pred HHHHHHCCCCEEEEC
Confidence 334455687665443
No 29
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=98.56 E-value=2e-07 Score=106.33 Aligned_cols=133 Identities=11% Similarity=0.046 Sum_probs=101.4
Q ss_pred CCCChhcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHh-------C---CCCceEEEeecChhhhcchHHHHHHh
Q 006783 446 EGLTTKDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKR-------K---VQNLGVVLKIETKSGFERLPHILLEA 514 (631)
Q Consensus 446 p~LTekD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~-------~---~~~~~IiaKIEt~~av~NL~eIl~~a 514 (631)
|.+=...++.|..+.. +...|.++||.+++++..+++.++.. + .+++.+.++|||+.|+.|+++|+.
T Consensus 367 ~~~f~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~-- 444 (575)
T PRK11177 367 KEILHDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAK-- 444 (575)
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHh--
Confidence 3444445555666665 68899999999999999999887632 1 146899999999999999999996
Q ss_pred hcCCCCcEEEEecCCccccc-----C-----------hhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhH
Q 006783 515 MKSSNPLGVMIARGDLAVEC-----G-----------WERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEI 578 (631)
Q Consensus 515 ~~~~~~DGImIaRGDL~vei-----g-----------~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEv 578 (631)
++|+++||+.||+.-+ + .+.+..+.++++..|+++||||.++.+|= +.|..
T Consensus 445 ----~vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A------~dp~~--- 511 (575)
T PRK11177 445 ----EVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELA------GDERA--- 511 (575)
T ss_pred ----hCCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCC------CCHHH---
Confidence 3599999999999833 1 26888899999999999999999988753 33332
Q ss_pred HhhhhccccCccccc
Q 006783 579 TDVASARRASCVMLN 593 (631)
Q Consensus 579 tDva~a~gaD~vmLs 593 (631)
.=+..+.|.|-+-.+
T Consensus 512 ~~lLlglGi~~lSm~ 526 (575)
T PRK11177 512 TLLLLGMGLDEFSMS 526 (575)
T ss_pred HHHHHHCCCCeEEEC
Confidence 225555677655443
No 30
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=97.62 E-value=8.7e-05 Score=78.09 Aligned_cols=153 Identities=22% Similarity=0.149 Sum_probs=111.0
Q ss_pred hcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCce---EEEeecChhhhcchHHHHHHhhcCCCC-cEEEE
Q 006783 451 KDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLG---VVLKIETKSGFERLPHILLEAMKSSNP-LGVMI 525 (631)
Q Consensus 451 kD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~---IiaKIEt~~av~NL~eIl~~a~~~~~~-DGImI 525 (631)
--..||.-+.. .+|+|-++.|+++.|+..+-..+.+.. ...+ +++.|||++|+.|..+|...+ +. .|+.+
T Consensus 68 ~g~~Dl~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~-~~~~~~~l~a~iETa~gv~~~~eIA~a~----~~l~~l~~ 142 (283)
T COG2301 68 WGADDLAAVVRSAVDGVVLPKVESAADVEELDQLLREAE-AAAGREILIALIETARGVLNAEEIAAAS----GRLVGLAF 142 (283)
T ss_pred hhHHHHHHHHhcCCCEEEccCcCchHHHHHHHHHhhhhh-ccccchhhHHhhhcHHHHhCHHHHhcCc----cceeeeEe
Confidence 44456666665 599999999999999999999887654 2233 999999999999999998766 34 89999
Q ss_pred ecCCcccccChh-------hHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc---
Q 006783 526 ARGDLAVECGWE-------RLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN--- 593 (631)
Q Consensus 526 aRGDL~veig~e-------~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs--- 593 (631)
|-.||..++|.. .+..+...|+..|+++|++.+= | |. +=++++---+.| +.++ .|.++-++-
T Consensus 143 Ga~Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D-~-V~-~d~~d~~g~~~e---~~~a~~~Gf~GK~~IHP~ 216 (283)
T COG2301 143 GANDLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAID-G-VY-TDINDPEGFARE---AAQAAALGFDGKTCIHPS 216 (283)
T ss_pred cHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCccc-c-cc-cccCCHHHHHHH---HHHHHHcCCCcccccChh
Confidence 999999999873 5666889999999999999962 1 00 001111111222 3333 588877763
Q ss_pred -------CCccHHHHHHHHHHHHHHHhh
Q 006783 594 -------KGKHVVEAVSTLDKILHINTA 614 (631)
Q Consensus 594 -------kG~ypveAV~~L~~Il~r~e~ 614 (631)
.--.+-+-|.+-..|+...+.
T Consensus 217 QI~~vn~af~Ps~~ev~~Ar~Il~a~~~ 244 (283)
T COG2301 217 QIEVVNRAFSPSEEEVAWARRVLEAAAA 244 (283)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhh
Confidence 344466778888888887663
No 31
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=97.60 E-value=0.00013 Score=82.55 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=77.7
Q ss_pred CCEEEEeccCChhHHHHHHHHHHHhC----C--CCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccCh
Q 006783 463 ADMVGISFVRDSCDIAMLRKELEKRK----V--QNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGW 536 (631)
Q Consensus 463 ~D~V~~SFV~sa~Dv~~lr~~L~~~~----~--~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~ 536 (631)
-=||.+|-|++++|+..+.+.+.... . ..+.+++.|||..|+-|++||+.+. ++.+.|+..|+.|+..+++.
T Consensus 185 gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~al--r~rv~gLn~G~~Dy~~sli~ 262 (511)
T cd00480 185 GPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYEL--RDHSAGLNCGRWDYIFSEIK 262 (511)
T ss_pred CcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhc--cCcceeeecChHHHHHHhcc
Confidence 44899999999999999998886422 1 2588999999999999999999763 23578999999999999853
Q ss_pred h--------------------hHHHHHHHHHHHHHhcCCCEE
Q 006783 537 E--------------------RLADMQEEILSICGAAHVPVI 558 (631)
Q Consensus 537 e--------------------~l~~~Qk~Ii~~c~aagkPvi 558 (631)
. -+..++..++..|+++|.+.|
T Consensus 263 ~~~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AI 304 (511)
T cd00480 263 TFRNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAM 304 (511)
T ss_pred ccccCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCcc
Confidence 1 255678889999999999874
No 32
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=97.39 E-value=0.00022 Score=80.33 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=76.6
Q ss_pred CCEEEEeccCChhHHHHHHHHHHHh----CC--CCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccCh
Q 006783 463 ADMVGISFVRDSCDIAMLRKELEKR----KV--QNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGW 536 (631)
Q Consensus 463 ~D~V~~SFV~sa~Dv~~lr~~L~~~----~~--~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~ 536 (631)
. ||-+|-+++++|+..+.+.+... |. ..+++.+.|||+.|+-|++||+.+. +..+.|+..||.|+..+++.
T Consensus 186 p-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~al--r~Rl~gLn~G~~Dy~~sli~ 262 (511)
T cd00727 186 P-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYEL--RDHSAGLNCGRWDYIFSFIK 262 (511)
T ss_pred c-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhc--cCceEEEEcChHHHHHHHHH
Confidence 6 99999999999999999888632 21 3588999999999999999999764 23579999999999998832
Q ss_pred --------------------hhHHHHHHHHHHHHHhcCCCEE
Q 006783 537 --------------------ERLADMQEEILSICGAAHVPVI 558 (631)
Q Consensus 537 --------------------e~l~~~Qk~Ii~~c~aagkPvi 558 (631)
+-+...++.++..|+++|+..|
T Consensus 263 ~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~AI 304 (511)
T cd00727 263 KFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHAM 304 (511)
T ss_pred hhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCcc
Confidence 2333347779999999999977
No 33
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=97.36 E-value=0.00025 Score=79.83 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=75.7
Q ss_pred CEEEEeccCChhHHHHHHHHHHHh----CC--CCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccC--
Q 006783 464 DMVGISFVRDSCDIAMLRKELEKR----KV--QNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECG-- 535 (631)
Q Consensus 464 D~V~~SFV~sa~Dv~~lr~~L~~~----~~--~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig-- 535 (631)
-+|-++-|++++|+..+.+.+... |. ..+++.+.|||+.|+-|++||+.+. +..+.|+..||.|+..++.
T Consensus 187 p~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~EIa~al--r~Rl~gLn~G~~Dy~~S~ik~ 264 (511)
T TIGR01344 187 PYFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDEILYEL--REHISGLNCGRWDYIFSFIKT 264 (511)
T ss_pred CEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHHHHHhc--cCceeEEEcChHHhhhhHHHH
Confidence 599999999999999998888632 21 3588999999999999999999764 2357999999999995444
Q ss_pred --h----------------hhHHHHHHHHHHHHHhcCCCEE
Q 006783 536 --W----------------ERLADMQEEILSICGAAHVPVI 558 (631)
Q Consensus 536 --~----------------e~l~~~Qk~Ii~~c~aagkPvi 558 (631)
. +-+...++.++..|+++|+.+|
T Consensus 265 ~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~AI 305 (511)
T TIGR01344 265 LRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHAM 305 (511)
T ss_pred HhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCcc
Confidence 1 3444557888899999999887
No 34
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=97.29 E-value=5e-06 Score=92.50 Aligned_cols=449 Identities=16% Similarity=0.153 Sum_probs=251.6
Q ss_pred hHhhhhhhhhcCCCCchhHHHHHHHHHhhccchHHHHHHHhhCcccccCCchhhhHHhHHHHHHHHHHhhcCCCCccccc
Q 006783 57 ERWNASRLKLCHRHYSDSARNLIHYLALRCLDLEQLKEDLSCNSLLNLESINSYILASLTAGIQLLDNQKSSSLNTQESI 136 (631)
Q Consensus 57 ~~~~~~~~~~~~~~~~~sa~Nl~~YlalR~~Dlr~LQ~~L~~~GlssLgr~E~~v~~~l~~v~~~L~~~~~~~~~~~~~~ 136 (631)
..|.....--+.-....+..++++||+.+.-++-.|- + |=|..|.| .++++.+..+++.....+... ...
T Consensus 17 ~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlN-------f-ShGs~~~h-~~tidn~~~a~~~~~~~~~ai-~LD 86 (501)
T KOG2323|consen 17 PKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLN-------F-SHGSHEYH-QETIDNLRDAISNTGALPCAI-MLD 86 (501)
T ss_pred cccccceeeEeccCCccchHHHHHHHHHcCCcEEEEE-------c-CCCChHHH-HHHHHHHHHHHhhcCCcchhh-hhc
Confidence 3344444333555677899999999999988775432 2 35556665 356777777766654442211 001
Q ss_pred ccccccchhhhHhHHhHHHHhHHhhcCCCCCCCCeEEEEecCCCCChHH--HHHHHHhCCCEEEeecCCCChHHHHHHHH
Q 006783 137 LYQEENGNFMIQALGKKLSANKELLLGPLRHNQTNHIMVTVGQEASESE--ISDILKAGASIIRINCAHGNPSIWSEIIR 214 (631)
Q Consensus 137 ~~~~~~~~~~~~~~~~~L~~~~~~l~G~~~~~R~TkImvTlgp~aa~~~--i~~Li~aGMdvaRINcAHg~~e~w~~mI~ 214 (631)
+..|+-.. + .+..+ .-+....++.++|+.+-+-+...++ .-++-..+-+|-+.||.|.+...|..++.
T Consensus 87 tkGpEirt---g----~~~~~---~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vddgi~s~~V~ 156 (501)
T KOG2323|consen 87 TKGPEIRT---G----DLKNG---KPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVDDGLISLIVK 156 (501)
T ss_pred cCCCeEee---c----ccCCC---CceeecCCCEEEEEcChhhccccceEEEeehHHhhhccccCCEEEECCceeeeEEE
Confidence 11222111 0 11111 2233456677778777766555333 66677777899999999999999999888
Q ss_pred HHHHHHhhcCCceEEEecCCCCeeeeeccCCCCceeccCCCCCCCCccccCcccccccCCCCCCCCCCCCCce--eeccc
Q 006783 215 RVKTSSQMLEMPCQILMDLAGPKLRTGNLKPGPCIIKISPKKNATGNVILPSQVWLSHKDAGPPPSHLSPDAV--LFIDD 292 (631)
Q Consensus 215 ~vR~a~~~~g~~~~IlmDL~GPKIRtG~i~~gp~v~~~~p~rd~~G~v~~pa~~wl~~~~~~~~~~~~~~~~~--~~~~~ 292 (631)
.+ ++. .-+|.+..+..+++-|.+- +++++..+++.+..+ ..|...-+.++.. +.+ -++-.
T Consensus 157 ~~---~~~-~~~c~v~n~g~l~s~k~~v--------nlpg~~vdlp~ltek-d~~dl~fGven~v-----d~i~~SfIR~ 218 (501)
T KOG2323|consen 157 SV---SKD-EVTCRVENGGMLGSRKGNV--------NLPGTHVDLPALTEK-DEKDLKFGVENKV-----DMIFASFIRK 218 (501)
T ss_pred Ee---ecC-ceEEEEecCcccccccCcc--------cCCCccccCCccChh-hHHHHhcCCCCCC-----CEEEeeeeee
Confidence 77 444 7889999999999888762 334455667766666 5555544332111 110 11111
Q ss_pred hhhhhh----cc-CCCEEEEeccc------cccchhhhccCccccccccccccCCcccccCCCCccceecccCceEEecc
Q 006783 293 KKFLSE----LQ-VGHILKFSDAR------ECSRTAYVQSGTELHRKGKKIRFPAAQVVDVPAVEPFIRLRVGDLLTISR 361 (631)
Q Consensus 293 ~~~~~~----L~-~Gd~v~l~d~r------~~~~~~y~~~gt~~~~~g~~~~~~~~~~~~~p~~~~~i~l~~Gd~l~lt~ 361 (631)
++.... |. .|..+.+--.- ...+.-|..+.......|..+ .++|..+.++..|. .|+.
T Consensus 219 a~dv~~iR~~Lg~~g~~ikiisKIEn~~g~~nfDeIl~~sDg~MvarGdlG-------ieip~e~vflaQK~----~I~k 287 (501)
T KOG2323|consen 219 ASDVREVRKVLGESGKNIKLISKIENQEGVSNFDEILIESDGIMVARGDLG-------IEIPAEKVFLAQKM----MIYK 287 (501)
T ss_pred hHHHHHHHHHhCccCCcceEEEEechhhhhccHHHHHHhcCceEEEeCCCC-------cccCHHHHHHHHHH----HHHH
Confidence 221111 11 23333332110 001111111111111111110 12222221111111 1111
Q ss_pred CCCcccCCCCCCCCCccEEeeCchhhhcccCCCCcEEEeCCeEEEEEEEEeCCE-----EEEEEEecCCCCceecCCcee
Q 006783 362 DSSCEQDESSEPISSAHRITCSSSCLFDSVKPGEPIAFDDGKIWGLIQGASISE-----IVVSITHAGPRGTKLGSGKSI 436 (631)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~I~ct~p~l~~~v~~Gd~I~iDDGkI~~~V~~v~~~~-----i~~~V~~a~~~Gg~L~s~KGI 436 (631)
.=+.|-+|..----+.--+..-.+.. +---|..+....-..++.+-.
T Consensus 288 ----------------------------cn~~gKPVI~atqmleSm~~kprPtRaE~SDVanAVLdg~D~vmLsgEta~G 339 (501)
T KOG2323|consen 288 ----------------------------CNSAGKPVICATQMLESMIVKPRPTRAEASDVANAVLDGADCVMLSGETAKG 339 (501)
T ss_pred ----------------------------hcccCCCEEEehhhHHhhccCCCCCccchHHHHHHHhccCceEEeccchhcC
Confidence 00112222211000000000001111 111122222233345666777
Q ss_pred ecCCCcccCCCCChhcHHhHHHHHhcCCEE--EEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHh
Q 006783 437 NIPKSNIHFEGLTTKDLMDLEFVASHADMV--GISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEA 514 (631)
Q Consensus 437 NlP~~~l~lp~LTekD~~dl~f~~~~~D~V--~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a 514 (631)
++|-..+.+=+.+.++.++..+...+.|.+ +++|..+ ++..+....-..........-.++|..|.. .++...
T Consensus 340 ~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~~--~ie~~a~~Av~~a~~~~a~aIvv~T~sg~~---a~lvsk 414 (501)
T KOG2323|consen 340 KYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMS--TIESLAASAVRAATKCLASAIVVLTKSGYT---AILVSK 414 (501)
T ss_pred cCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCCCc--hhHHHHHHHHHHHHhhcceEEEEEecCccc---HHHHhc
Confidence 888888887778888888877655544444 3677766 455544433333223345666789999987 556666
Q ss_pred hcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCcccccC
Q 006783 515 MKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLNK 594 (631)
Q Consensus 515 ~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLsk 594 (631)
+|-+.|. |+|.|++.. .+...+++.|+-.|.+ ..|+.-.++..|+.++.+.++..+..++.+++ -+|++++
T Consensus 415 yrP~~PI-i~vt~~~~~-----aR~~~l~Rgv~Pvl~~-~~~~~~~~~~~e~~i~~g~~~~k~~g~~k~gd--~~vvv~~ 485 (501)
T KOG2323|consen 415 YRPSVPI-ISVTRPVLA-----ARQSHLYRGIIPVLYA-RSPVEDWSEDVESRIKFGLDFGKKKGILKKGD--VVVVVNK 485 (501)
T ss_pred cCCCCCE-EEEeccHHH-----HHHHHhhccceeeeec-ccchhhhhhhHHHHHHHHHHHHHhcchhhcCC--EEEEEec
Confidence 7777666 999999988 8889999999999988 89999999999999999999999988888877 6888886
Q ss_pred Cc
Q 006783 595 GK 596 (631)
Q Consensus 595 G~ 596 (631)
|.
T Consensus 486 ~~ 487 (501)
T KOG2323|consen 486 GK 487 (501)
T ss_pred cc
Confidence 54
No 35
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=97.25 E-value=0.00098 Score=70.66 Aligned_cols=129 Identities=16% Similarity=0.109 Sum_probs=89.7
Q ss_pred hcHHhHHHHHhcCC-EEEEeccCChhHHHHHHHHHHHh-------C---CCCceEEEeecChhhhcchHHHHHHhhcCCC
Q 006783 451 KDLMDLEFVASHAD-MVGISFVRDSCDIAMLRKELEKR-------K---VQNLGVVLKIETKSGFERLPHILLEAMKSSN 519 (631)
Q Consensus 451 kD~~dl~f~~~~~D-~V~~SFV~sa~Dv~~lr~~L~~~-------~---~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~ 519 (631)
..++.|..+..+.+ -|.++||++.+++.++++.+++. | ..++.+=++||||.++--+++++..+
T Consensus 124 ~QlrAilra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~~----- 198 (293)
T PF02896_consen 124 TQLRAILRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKEV----- 198 (293)
T ss_dssp HHHHHHHHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTTS-----
T ss_pred HHHHHHHHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHHC-----
Confidence 44555555554322 38899999999999999988754 1 25689999999999999999999765
Q ss_pred CcEEEEecCCcc------------cc--c--ChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhh
Q 006783 520 PLGVMIARGDLA------------VE--C--GWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVAS 583 (631)
Q Consensus 520 ~DGImIaRGDL~------------ve--i--g~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~ 583 (631)
|.+-||=.||. +. . -.+-+-...++++..|+++||||.++.++- +.| +..-...
T Consensus 199 -DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a------~~p---~~~~~Ll 268 (293)
T PF02896_consen 199 -DFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMA------SDP---EAIPLLL 268 (293)
T ss_dssp -SEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGG------GSH---HHHHHHH
T ss_pred -CEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCC------CCH---HHHHHHH
Confidence 99999766662 22 1 125788888999999999999999999865 233 3333555
Q ss_pred ccccCcccccC
Q 006783 584 ARRASCVMLNK 594 (631)
Q Consensus 584 a~gaD~vmLsk 594 (631)
..|.+.+..+-
T Consensus 269 ~lGi~~lSv~p 279 (293)
T PF02896_consen 269 GLGIRSLSVSP 279 (293)
T ss_dssp HHT-SEEEE-G
T ss_pred HcCCCEEEECH
Confidence 67888776653
No 36
>PRK09255 malate synthase; Validated
Probab=97.13 E-value=0.00069 Score=76.80 Aligned_cols=94 Identities=11% Similarity=0.090 Sum_probs=76.2
Q ss_pred cCCEEEEeccCChhHHHHHHHHHHHh----CC--CCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCccccc-
Q 006783 462 HADMVGISFVRDSCDIAMLRKELEKR----KV--QNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVEC- 534 (631)
Q Consensus 462 ~~D~V~~SFV~sa~Dv~~lr~~L~~~----~~--~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~vei- 534 (631)
+. +|-++-+++++|+..+.+.+... |. ..+++++.|||+.|+-|++||+.+. +..+.|+..||.|+..++
T Consensus 206 gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~--r~Rl~gLn~G~~Dy~~S~i 282 (531)
T PRK09255 206 GP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYEL--REHIAGLNCGRWDYIFSYI 282 (531)
T ss_pred Cc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhc--cCceEEEEcChHHhhhhHH
Confidence 46 99999999999999999888632 21 3588999999999999999999774 235799999999999662
Q ss_pred ---Ch----------------hhHHHHHHHHHHHHHhcCCCEE
Q 006783 535 ---GW----------------ERLADMQEEILSICGAAHVPVI 558 (631)
Q Consensus 535 ---g~----------------e~l~~~Qk~Ii~~c~aagkPvi 558 (631)
+. +-+...++.++..|+++|+..|
T Consensus 283 k~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~AI 325 (531)
T PRK09255 283 KTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHAM 325 (531)
T ss_pred HHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCcc
Confidence 21 3344457788899999999876
No 37
>PLN02626 malate synthase
Probab=96.44 E-value=0.009 Score=67.86 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=73.7
Q ss_pred CEEEEeccCChhHHHHHHHHHHHh----C--CCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCc----ccc
Q 006783 464 DMVGISFVRDSCDIAMLRKELEKR----K--VQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDL----AVE 533 (631)
Q Consensus 464 D~V~~SFV~sa~Dv~~lr~~L~~~----~--~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL----~ve 533 (631)
-||-++-+++++|++.+.+.+... | ...+.+.+.|||..|+-|++||+.+. +..+-|+..||-|+ .-.
T Consensus 213 pYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~el--r~r~agLn~GrwDyifS~ik~ 290 (551)
T PLN02626 213 PFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYEL--RDHSAGLNCGRWDYIFSFVKT 290 (551)
T ss_pred ceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHh--hhheeeeecChHHHHhHHHHH
Confidence 589999999999999998888632 2 13689999999999999999999875 23579999999999 333
Q ss_pred cC----------------hhhHHHHHHHHHHHHHhcCCCEE
Q 006783 534 CG----------------WERLADMQEEILSICGAAHVPVI 558 (631)
Q Consensus 534 ig----------------~e~l~~~Qk~Ii~~c~aagkPvi 558 (631)
++ ..-+..+.+.++..|+++|+..|
T Consensus 291 l~~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~AI 331 (551)
T PLN02626 291 FRAHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHAM 331 (551)
T ss_pred hccCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCccc
Confidence 22 23344455699999999999976
No 38
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=96.43 E-value=0.016 Score=65.51 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=81.1
Q ss_pred CCEEEEeccCChhHHHHHHHHHHHhCC----------------------CCceEEEeecChhhhcchHHHHHHhhcC--C
Q 006783 463 ADMVGISFVRDSCDIAMLRKELEKRKV----------------------QNLGVVLKIETKSGFERLPHILLEAMKS--S 518 (631)
Q Consensus 463 ~D~V~~SFV~sa~Dv~~lr~~L~~~~~----------------------~~~~IiaKIEt~~av~NL~eIl~~a~~~--~ 518 (631)
+-.|.+||.++++||..+..+.++.+. ..+.||.=+||.+++.|.++|+..-+.+ .
T Consensus 123 IfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~~ 202 (506)
T TIGR02751 123 IFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHEP 202 (506)
T ss_pred eEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcCc
Confidence 346899999999999999988887642 2458999999999999999999873210 2
Q ss_pred CCcEEEEecCCcccccCh----hhHHHHHHHHHHHHHhcCCCEEE
Q 006783 519 NPLGVMIARGDLAVECGW----ERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~----e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
+---||+||.|=+.+.|+ -.+-.+|+++.+.|+++|+++..
T Consensus 203 ~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~p 247 (506)
T TIGR02751 203 EYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYP 247 (506)
T ss_pred CceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 235899999999999998 48889999999999999999864
No 39
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=95.80 E-value=0.039 Score=62.39 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=82.3
Q ss_pred CCEEEEeccCChhHHHHHHHHHHHhC-------------CCCceEEEeecChhhhcchHHHHHHhhcCC----CCcEEEE
Q 006783 463 ADMVGISFVRDSCDIAMLRKELEKRK-------------VQNLGVVLKIETKSGFERLPHILLEAMKSS----NPLGVMI 525 (631)
Q Consensus 463 ~D~V~~SFV~sa~Dv~~lr~~L~~~~-------------~~~~~IiaKIEt~~av~NL~eIl~~a~~~~----~~DGImI 525 (631)
+-.+.+|+.++++||.++..++++.+ ...+.||.-+||.+.+.|.++|+..-+..+ +.--|||
T Consensus 122 i~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qeVml 201 (494)
T PRK13655 122 IFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLRVFL 201 (494)
T ss_pred hceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeEEEE
Confidence 56789999999999999998887665 125789999999999999999997643322 2358999
Q ss_pred ecCCcccccCh----hhHHHHHHHHHHHHHhcCCCEEE
Q 006783 526 ARGDLAVECGW----ERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 526 aRGDL~veig~----e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
|+.|=+.+-|+ -.+..+|+++...|+++|+++..
T Consensus 202 GySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~ 239 (494)
T PRK13655 202 ARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYP 239 (494)
T ss_pred ecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99999999998 58899999999999999998864
No 40
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.58 E-value=0.13 Score=56.40 Aligned_cols=121 Identities=21% Similarity=0.196 Sum_probs=71.3
Q ss_pred ChhcHHhH-HHHHh-cCCEEEEec-------cCChhHHHHHHHHHHHhCCCCceEEE-eecChhhhcchHHHHHHhhcCC
Q 006783 449 TTKDLMDL-EFVAS-HADMVGISF-------VRDSCDIAMLRKELEKRKVQNLGVVL-KIETKSGFERLPHILLEAMKSS 518 (631)
Q Consensus 449 TekD~~dl-~f~~~-~~D~V~~SF-------V~sa~Dv~~lr~~L~~~~~~~~~Iia-KIEt~~av~NL~eIl~~a~~~~ 518 (631)
++.+...+ +-+.+ ++|+|.+.+ ..+..+...+.+.+++. ++.||+ .|-|.+....+-+ +
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~---~ipVIaG~V~t~e~A~~l~~----a---- 207 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL---DVPVIVGGCVTYTTALHLMR----T---- 207 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC---CCCEEEeCCCCHHHHHHHHH----c----
Confidence 33444333 44445 799999954 33333556666666654 367887 8888887765543 3
Q ss_pred CCcEEEEecCCcccc-------cChhhHHHHHHHHHHHHHhc-------CCCEEEEechhhhhhhCCCCChhhHHhhhhc
Q 006783 519 NPLGVMIARGDLAVE-------CGWERLADMQEEILSICGAA-------HVPVIWATQVLESLVKFGVPTRAEITDVASA 584 (631)
Q Consensus 519 ~~DGImIaRGDL~ve-------ig~e~l~~~Qk~Ii~~c~aa-------gkPvi~ATQvLESM~~~~~PtRAEvtDva~a 584 (631)
|+|+|||++|-=+.. +|.+.+..+.+ ....++++ ++|||.+. ++-+- .|++.|
T Consensus 208 GAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~-~~~a~~~~l~~~~~~~vpVIAdG---------GI~~~---~diakA 274 (368)
T PRK08649 208 GAAGVLVGIGPGAACTSRGVLGIGVPMATAIAD-VAAARRDYLDETGGRYVHVIADG---------GIGTS---GDIAKA 274 (368)
T ss_pred CCCEEEECCCCCcCCCCcccCCCCcCHHHHHHH-HHHHHHHhhhhhcCCCCeEEEeC---------CCCCH---HHHHHH
Confidence 789999998852111 12332222111 11222222 68999755 45554 456666
Q ss_pred --cccCccccc
Q 006783 585 --RRASCVMLN 593 (631)
Q Consensus 585 --~gaD~vmLs 593 (631)
.|||+||+.
T Consensus 275 lalGAd~Vm~G 285 (368)
T PRK08649 275 IACGADAVMLG 285 (368)
T ss_pred HHcCCCeeccc
Confidence 699999995
No 41
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=95.57 E-value=0.028 Score=66.81 Aligned_cols=113 Identities=14% Similarity=0.129 Sum_probs=85.8
Q ss_pred EEEEeccCChhHHHHHHHHHHH-------h-C--CCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccc-
Q 006783 465 MVGISFVRDSCDIAMLRKELEK-------R-K--VQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVE- 533 (631)
Q Consensus 465 ~V~~SFV~sa~Dv~~lr~~L~~-------~-~--~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve- 533 (631)
-|.++||.+.+++..+++.+++ . | ..++.+=++||||.|+--+|+++..+ |.+=||=.||.--
T Consensus 553 ~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~~~------DF~SIGtNDL~Qy~ 626 (748)
T PRK11061 553 SILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRV------DFISVGTNDLTQYL 626 (748)
T ss_pred EEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHHhC------CEEEECccHHHHHH
Confidence 3889999999999999988874 1 2 12467889999999999999998775 9999998887521
Q ss_pred ----cC-----------hhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCcccc
Q 006783 534 ----CG-----------WERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVML 592 (631)
Q Consensus 534 ----ig-----------~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmL 592 (631)
=+ .+-|-.+.++++..|+++||||.++.+|= +.|.... +..+.|.+.+-.
T Consensus 627 la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~a------~dp~~~~---~L~glGi~~lS~ 691 (748)
T PRK11061 627 LAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMA------GDPMGAL---LLIGLGYRHLSM 691 (748)
T ss_pred HHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCcc------cCHHHHH---HHHHCCCcEEcc
Confidence 11 25777888999999999999999988753 2344333 555567665443
No 42
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=94.87 E-value=0.22 Score=60.88 Aligned_cols=113 Identities=20% Similarity=0.159 Sum_probs=90.1
Q ss_pred CCEEEEeccCChhHHHHHHHHHHHhCC----CCceEEEeecChhhhcchHHHHHHhhc-----------CCCCcEEEEec
Q 006783 463 ADMVGISFVRDSCDIAMLRKELEKRKV----QNLGVVLKIETKSGFERLPHILLEAMK-----------SSNPLGVMIAR 527 (631)
Q Consensus 463 ~D~V~~SFV~sa~Dv~~lr~~L~~~~~----~~~~IiaKIEt~~av~NL~eIl~~a~~-----------~~~~DGImIaR 527 (631)
+-...+|+.++++||..+.-+.++.|. ..+.||.=+||.+.++|.++|+..-+. +.+.--||||+
T Consensus 546 lg~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGY 625 (974)
T PTZ00398 546 LGAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGY 625 (974)
T ss_pred cceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEec
Confidence 456789999999999999988877442 357899999999999999999987432 23457899999
Q ss_pred CCcccccCh----hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCCh
Q 006783 528 GDLAVECGW----ERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTR 575 (631)
Q Consensus 528 GDL~veig~----e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtR 575 (631)
.|=+.+-|+ -.+..+|+++...|+++|+.+..-=-.=.|.-.-|-|+.
T Consensus 626 SDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~~ 677 (974)
T PTZ00398 626 SDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQH 677 (974)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChH
Confidence 999999998 589999999999999999999763333334444555554
No 43
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=94.44 E-value=0.19 Score=60.90 Aligned_cols=115 Identities=18% Similarity=0.157 Sum_probs=89.5
Q ss_pred CCEEEEeccCChhHHHHHHHHHHHhCC-------CCceEEEeecChhhhcchHHHHHHhhc----------CCCCcEEEE
Q 006783 463 ADMVGISFVRDSCDIAMLRKELEKRKV-------QNLGVVLKIETKSGFERLPHILLEAMK----------SSNPLGVMI 525 (631)
Q Consensus 463 ~D~V~~SFV~sa~Dv~~lr~~L~~~~~-------~~~~IiaKIEt~~av~NL~eIl~~a~~----------~~~~DGImI 525 (631)
+..+.+|+.++++||..+.-++++.|. ..+.||.=+||.+.++|.++|+..-.. +.+.--||+
T Consensus 487 i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeVMl 566 (911)
T PRK00009 487 IGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEVML 566 (911)
T ss_pred hceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEEEe
Confidence 577889999999999999988887653 157899999999999999999987432 122247999
Q ss_pred ecCCcccccCh----hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhh
Q 006783 526 ARGDLAVECGW----ERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAE 577 (631)
Q Consensus 526 aRGDL~veig~----e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAE 577 (631)
|..|=+-+-|+ -.+..+|+++...|+++|+++..-=-.=.|.-.-|-|+-..
T Consensus 567 GySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~FhGrGGsv~RGGgp~~~a 622 (911)
T PRK00009 567 GYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLFHGRGGTVGRGGGPAYAA 622 (911)
T ss_pred ecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCChHHHH
Confidence 99999999998 58999999999999999999975322222333344455433
No 44
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=94.09 E-value=0.88 Score=49.07 Aligned_cols=123 Identities=22% Similarity=0.267 Sum_probs=74.7
Q ss_pred ChhcHHhHHHHHh-cCCEEEEeccC-ChhHHHHHHHHHHHhCCCCceEEE-eecChhhhcchHHHHHHhhcCCCCcEEEE
Q 006783 449 TTKDLMDLEFVAS-HADMVGISFVR-DSCDIAMLRKELEKRKVQNLGVVL-KIETKSGFERLPHILLEAMKSSNPLGVMI 525 (631)
Q Consensus 449 TekD~~dl~f~~~-~~D~V~~SFV~-sa~Dv~~lr~~L~~~~~~~~~Iia-KIEt~~av~NL~eIl~~a~~~~~~DGImI 525 (631)
++++.+.++.+++ ++|+|.+++-. +.+.+.++.+.+++.. .++.|++ .+.|.+...++.+ + |+|+|.+
T Consensus 92 ~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~-p~v~Vi~G~v~t~~~A~~l~~----a----GaD~I~v 162 (325)
T cd00381 92 REDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKY-PNVDVIAGNVVTAEAARDLID----A----GADGVKV 162 (325)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHC-CCceEEECCCCCHHHHHHHHh----c----CCCEEEE
Confidence 3566677777776 79999987642 2244444445565554 3577775 7777777655532 3 7899998
Q ss_pred e--cCCccc-----ccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 526 A--RGDLAV-----ECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 526 a--RGDL~v-----eig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
+ +|--.. -.|.+.+ ..-.++.+.|+..++|||-+ -++.+-.+ ++.+ .|||+||+.
T Consensus 163 g~g~G~~~~t~~~~g~g~p~~-~~i~~v~~~~~~~~vpVIA~---------GGI~~~~d---i~kAla~GA~~VmiG 226 (325)
T cd00381 163 GIGPGSICTTRIVTGVGVPQA-TAVADVAAAARDYGVPVIAD---------GGIRTSGD---IVKALAAGADAVMLG 226 (325)
T ss_pred CCCCCcCcccceeCCCCCCHH-HHHHHHHHHHhhcCCcEEec---------CCCCCHHH---HHHHHHcCCCEEEec
Confidence 4 332110 1122222 23345566777789999853 45666544 4444 799999993
No 45
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=93.29 E-value=0.49 Score=52.08 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=62.1
Q ss_pred HHHHh-cCCEEEEe-------ccCChhHHHHHHHHHHHhCCCCceEEE-eecChhhhcchHHHHHHhhcCCCCcEEEEec
Q 006783 457 EFVAS-HADMVGIS-------FVRDSCDIAMLRKELEKRKVQNLGVVL-KIETKSGFERLPHILLEAMKSSNPLGVMIAR 527 (631)
Q Consensus 457 ~f~~~-~~D~V~~S-------FV~sa~Dv~~lr~~L~~~~~~~~~Iia-KIEt~~av~NL~eIl~~a~~~~~~DGImIaR 527 (631)
+.+.+ ++|+|.+. |+....+-..+.+++++. ++.||+ .|-|.+....+-+ .|+|+||++|
T Consensus 149 ~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~---~IPVI~G~V~t~e~A~~~~~--------aGaDgV~~G~ 217 (369)
T TIGR01304 149 PIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL---DVPVIAGGVNDYTTALHLMR--------TGAAGVIVGP 217 (369)
T ss_pred HHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC---CCCEEEeCCCCHHHHHHHHH--------cCCCEEEECC
Confidence 44555 79999985 333333455556655543 366776 6666555433321 2789999988
Q ss_pred CCccc-----ccChhhHHHHHHHHHHHHH----hc---CCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 528 GDLAV-----ECGWERLADMQEEILSICG----AA---HVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 528 GDL~v-----eig~e~l~~~Qk~Ii~~c~----aa---gkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
|=-.. .++.+ .+.+-.++...++ +. .+|||.+. ++-+.. |++.| .|||+||+.
T Consensus 218 gg~~~~~~~lg~~~p-~~~ai~d~~~a~~~~~~e~g~r~vpVIAdG---------GI~tg~---di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 218 GGANTTRLVLGIEVP-MATAIADVAAARRDYLDETGGRYVHVIADG---------GIETSG---DLVKAIACGADAVVLG 284 (369)
T ss_pred CCCcccccccCCCCC-HHHHHHHHHHHHHHHHHhcCCCCceEEEeC---------CCCCHH---HHHHHHHcCCCEeeeH
Confidence 64211 11222 1111111111111 23 38999755 555654 56666 699999995
No 46
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.33 E-value=5 Score=42.08 Aligned_cols=149 Identities=14% Similarity=0.213 Sum_probs=81.8
Q ss_pred hhcHHhHHHHH-h-cCCEEEEe------------ccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhh
Q 006783 450 TKDLMDLEFVA-S-HADMVGIS------------FVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAM 515 (631)
Q Consensus 450 ekD~~dl~f~~-~-~~D~V~~S------------FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~ 515 (631)
.+|..+....+ + ++|+|-+. |.++++.+.++-+.+++. -++.|++||= + .++++.+|+..+.
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~--~~~Pv~vKl~-~-~~~~~~~~a~~~~ 176 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA--TDVPVIVKLT-P-NVTDIVEIARAAE 176 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc--cCCCEEEEeC-C-CchhHHHHHHHHH
Confidence 45555544333 3 58999774 445666666665555543 2578999983 2 2344556554332
Q ss_pred cCCCCcEEEEe-----cC-Ccc-------ccc----ChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhH
Q 006783 516 KSSNPLGVMIA-----RG-DLA-------VEC----GWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEI 578 (631)
Q Consensus 516 ~~~~~DGImIa-----RG-DL~-------vei----g~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEv 578 (631)
..|+|+|.+- +. |+. .+. |...-+...+.+-...++.++|+|... ++-|..++
T Consensus 177 -~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~G---------GI~~~~da 246 (296)
T cd04740 177 -EAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVG---------GIASGEDA 246 (296)
T ss_pred -HcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEEC---------CCCCHHHH
Confidence 2378998662 11 221 011 111122233344444455689999744 45555554
Q ss_pred HhhhhccccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 579 TDVASARRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 579 tDva~a~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
.+.. ..|||+||+. .||+.+. ++.+.+.+.|++|
T Consensus 247 ~~~l-~~GAd~V~igra~l~~p~~~~--~i~~~l~~~~~~~ 284 (296)
T cd04740 247 LEFL-MAGASAVQVGTANFVDPEAFK--EIIEGLEAYLDEE 284 (296)
T ss_pred HHHH-HcCCCEEEEchhhhcChHHHH--HHHHHHHHHHHHc
Confidence 4444 3799999997 5666543 3455555556665
No 47
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=92.16 E-value=1.4 Score=50.30 Aligned_cols=122 Identities=23% Similarity=0.294 Sum_probs=74.5
Q ss_pred ChhcHHhHHHHHh-cCCEEEEecc--CChhHHHHHHHHHHHhCCCCceEEEe-ecChhhhcchHHHHHHhhcCCCCcEEE
Q 006783 449 TTKDLMDLEFVAS-HADMVGISFV--RDSCDIAMLRKELEKRKVQNLGVVLK-IETKSGFERLPHILLEAMKSSNPLGVM 524 (631)
Q Consensus 449 TekD~~dl~f~~~-~~D~V~~SFV--~sa~Dv~~lr~~L~~~~~~~~~IiaK-IEt~~av~NL~eIl~~a~~~~~~DGIm 524 (631)
++.+.+-.+..++ ++|+|++--- .+..-++.+ +.+++.- .+..||++ |-|.+...++.+ + |+|+|.
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i-~~ik~~~-p~~~vi~g~v~t~e~a~~a~~----a----GaD~i~ 315 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMI-KYIKKTY-PELDVIGGNVVTMYQAQNLIQ----A----GVDGLR 315 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHH-HHHHHhC-CCCcEEEecCCCHHHHHHHHH----c----CcCEEE
Confidence 4566676777666 8999998543 223322223 2344332 45778775 999999877654 2 789999
Q ss_pred Ee--cCCcccc-----cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 525 IA--RGDLAVE-----CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 525 Ia--RGDL~ve-----ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
++ +|--... .|.+.+..+ ..+-..+++.++|||... ++-+-. |++.| .|||+||+.
T Consensus 316 vg~g~G~~~~t~~~~~~g~~~~~~i-~~~~~~~~~~~vpVIadG---------GI~~~~---di~kAla~GA~~V~vG 380 (505)
T PLN02274 316 VGMGSGSICTTQEVCAVGRGQATAV-YKVASIAAQHGVPVIADG---------GISNSG---HIVKALTLGASTVMMG 380 (505)
T ss_pred ECCCCCccccCccccccCCCcccHH-HHHHHHHHhcCCeEEEeC---------CCCCHH---HHHHHHHcCCCEEEEc
Confidence 85 4422111 222332222 235566777899999754 555543 46666 799999995
No 48
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=91.99 E-value=0.77 Score=55.66 Aligned_cols=114 Identities=16% Similarity=0.096 Sum_probs=85.5
Q ss_pred EEEEeccCChhHHHHHHHHHHHh--------CC-CCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCccc---
Q 006783 465 MVGISFVRDSCDIAMLRKELEKR--------KV-QNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAV--- 532 (631)
Q Consensus 465 ~V~~SFV~sa~Dv~~lr~~L~~~--------~~-~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~v--- 532 (631)
-|.++||.+.+++..+|+.+++. |. -++.|=++||+|.|.-.+++|+..+ |.+-|+=-||.-
T Consensus 697 ~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~ad~la~~~------DFfSiGTNDLtQ~tl 770 (856)
T TIGR01828 697 EIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALTADKIAEEA------DFFSFGTNDLTQMTF 770 (856)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHHHHHHHHhC------CEEEECccHHHHHHh
Confidence 69999999999999999888732 21 1367889999999999999999876 999997555531
Q ss_pred -----------c----------cCh-----hhHHHHHHHHHHHHHh--cCCCEEEEechhhhhhhCCCCChhhHHhhhhc
Q 006783 533 -----------E----------CGW-----ERLADMQEEILSICGA--AHVPVIWATQVLESLVKFGVPTRAEITDVASA 584 (631)
Q Consensus 533 -----------e----------ig~-----e~l~~~Qk~Ii~~c~a--agkPvi~ATQvLESM~~~~~PtRAEvtDva~a 584 (631)
. -|+ +-|....+.++..|++ +|+||.++.++- +.|.-.+ ....
T Consensus 771 g~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCGE~a------~dp~~i~---~l~~ 841 (856)
T TIGR01828 771 GFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICGEHG------GDPSSIE---FCHK 841 (856)
T ss_pred ccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCCCCc------CCHHHHH---HHHH
Confidence 1 122 4577888899999998 899999987642 4444433 5555
Q ss_pred cccCccccc
Q 006783 585 RRASCVMLN 593 (631)
Q Consensus 585 ~gaD~vmLs 593 (631)
.|.|.+..|
T Consensus 842 ~Gi~~~S~s 850 (856)
T TIGR01828 842 IGLNYVSCS 850 (856)
T ss_pred CCCCEEEEC
Confidence 677766554
No 49
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=91.76 E-value=2 Score=49.06 Aligned_cols=122 Identities=20% Similarity=0.281 Sum_probs=76.4
Q ss_pred ChhcHHhHHHHHh-cCCEEEEecc--CChhHHHHHHHHHHHhCCCCceEEE-eecChhhhcchHHHHHHhhcCCCCcEEE
Q 006783 449 TTKDLMDLEFVAS-HADMVGISFV--RDSCDIAMLRKELEKRKVQNLGVVL-KIETKSGFERLPHILLEAMKSSNPLGVM 524 (631)
Q Consensus 449 TekD~~dl~f~~~-~~D~V~~SFV--~sa~Dv~~lr~~L~~~~~~~~~Iia-KIEt~~av~NL~eIl~~a~~~~~~DGIm 524 (631)
++.+++.++-.++ ++|+|.+-.. .+..-++.++. +++.- .++.|+| -+-|.+..+.+-+ + |+|+|.
T Consensus 239 ~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~-ik~~~-~~~~v~aG~V~t~~~a~~~~~----a----Gad~I~ 308 (495)
T PTZ00314 239 RPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKK-LKSNY-PHVDIIAGNVVTADQAKNLID----A----GADGLR 308 (495)
T ss_pred CHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHH-HHhhC-CCceEEECCcCCHHHHHHHHH----c----CCCEEE
Confidence 3455666666666 7999998764 34443333433 33332 3578888 6778777765532 3 789999
Q ss_pred E--ecCC-----cccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 525 I--ARGD-----LAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 525 I--aRGD-----L~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
+ ++|= .-..+|.+.+. +-.++...|++.++|+|.. -++-|- .|++.| .|||+||+.
T Consensus 309 vg~g~Gs~~~t~~~~~~g~p~~~-ai~~~~~~~~~~~v~vIad---------GGi~~~---~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 309 IGMGSGSICITQEVCAVGRPQAS-AVYHVARYARERGVPCIAD---------GGIKNS---GDICKALALGADCVMLG 373 (495)
T ss_pred ECCcCCcccccchhccCCCChHH-HHHHHHHHHhhcCCeEEec---------CCCCCH---HHHHHHHHcCCCEEEEC
Confidence 6 4662 12224444432 3345667888899999863 355555 456666 799999996
No 50
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=91.43 E-value=6.8 Score=43.47 Aligned_cols=130 Identities=13% Similarity=0.145 Sum_probs=75.7
Q ss_pred ChhcHHhHHHHHh--cCCEEEEecc---------------CChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHH
Q 006783 449 TTKDLMDLEFVAS--HADMVGISFV---------------RDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHIL 511 (631)
Q Consensus 449 TekD~~dl~f~~~--~~D~V~~SFV---------------~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl 511 (631)
+.++..++...++ ++|+|-+.+- ++++.+.++-+.+.+. .++.|++||= + .+.++.+|+
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~--~~~Pv~vKl~-p-~~~~~~~~a 186 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG--SRLPVIVKLT-P-NITDIREPA 186 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc--cCCcEEEEcC-C-CcccHHHHH
Confidence 3455555554443 5888877432 3444555555555443 3588999994 3 456677776
Q ss_pred HHhhcCCCCcEEEE-----ecCC-----------c------ccccChhhHHHHHHHHHHHHHhc---CCCEEEEechhhh
Q 006783 512 LEAMKSSNPLGVMI-----ARGD-----------L------AVECGWERLADMQEEILSICGAA---HVPVIWATQVLES 566 (631)
Q Consensus 512 ~~a~~~~~~DGImI-----aRGD-----------L------~veig~e~l~~~Qk~Ii~~c~aa---gkPvi~ATQvLES 566 (631)
..+. ..|+|||.+ +|-. | +.=-|....+...+.|-...++. ..|+|-..
T Consensus 187 ~~~~-~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~G----- 260 (420)
T PRK08318 187 RAAK-RGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIG----- 260 (420)
T ss_pred HHHH-HCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeec-----
Confidence 6543 348999983 3211 1 11113344555666666655655 57888643
Q ss_pred hhhCCCCChhhHHhhhhccccCccccc
Q 006783 567 LVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 567 M~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
++-|..++-+... .|||+||+.
T Consensus 261 ----GI~s~~da~e~i~-aGA~~Vqi~ 282 (420)
T PRK08318 261 ----GIETWRDAAEFIL-LGAGTVQVC 282 (420)
T ss_pred ----CcCCHHHHHHHHH-hCCChheee
Confidence 4555555444433 799999997
No 51
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=91.20 E-value=2.6 Score=46.21 Aligned_cols=123 Identities=23% Similarity=0.235 Sum_probs=77.7
Q ss_pred ChhcHHhHHHHHh-cCCEEEE--eccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEE
Q 006783 449 TTKDLMDLEFVAS-HADMVGI--SFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMI 525 (631)
Q Consensus 449 TekD~~dl~f~~~-~~D~V~~--SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImI 525 (631)
.+.|.+-++-.++ ++|+|.+ +...+..-+..++. +++...+-..|.--|-|.++.++|-+ + |.|+|-|
T Consensus 106 ~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~-ik~~~~~~~viaGNV~T~e~a~~L~~----a----Gad~vkV 176 (352)
T PF00478_consen 106 RDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKK-IKKKFPDVPVIAGNVVTYEGAKDLID----A----GADAVKV 176 (352)
T ss_dssp STCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHH-HHHHSTTSEEEEEEE-SHHHHHHHHH----T----T-SEEEE
T ss_pred CHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHH-HHHhCCCceEEecccCCHHHHHHHHH----c----CCCEEEE
Confidence 3456776776665 8999988 56667766666664 55544223445557999999988633 3 6799999
Q ss_pred ecCCcccc-------cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 526 ARGDLAVE-------CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 526 aRGDL~ve-------ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
+=|==++- +|.+.+..+ -+....|+.+++|||- .-++=+ -.|++.| .|||+||+.
T Consensus 177 GiGpGsiCtTr~v~GvG~PQ~tAv-~~~a~~a~~~~v~iIA---------DGGi~~---sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 177 GIGPGSICTTREVTGVGVPQLTAV-YECAEAARDYGVPIIA---------DGGIRT---SGDIVKALAAGADAVMLG 240 (352)
T ss_dssp SSSSSTTBHHHHHHSBSCTHHHHH-HHHHHHHHCTTSEEEE---------ESS-SS---HHHHHHHHHTT-SEEEES
T ss_pred eccCCcccccccccccCCcHHHHH-HHHHHHhhhccCceee---------cCCcCc---ccceeeeeeecccceeec
Confidence 75532222 234444444 4556788889999995 344444 4568887 699999995
No 52
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=91.17 E-value=3.4 Score=44.26 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=64.5
Q ss_pred cHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCc
Q 006783 452 DLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDL 530 (631)
Q Consensus 452 D~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL 530 (631)
..+.++.+++ ++++|.++|-...+.+.. +++.| +.+++.+=|.+-.+.+ ..+ |+|+|.+---+-
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~~----lk~~g---~~v~~~v~s~~~a~~a----~~~----GaD~Ivv~g~ea 140 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIPR----LKENG---VKVIPVVASVALAKRM----EKA----GADAVIAEGMES 140 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHH----HHHcC---CEEEEEcCCHHHHHHH----HHc----CCCEEEEECccc
Confidence 3456677777 699999998654433343 44333 6788888665433222 222 789999822233
Q ss_pred ccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 531 AVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 531 ~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
+-..|.......-+++ +++.++|||.+. ++-+...+..+. +.|||+||+.
T Consensus 141 gGh~g~~~~~~ll~~v---~~~~~iPviaaG---------GI~~~~~~~~al-~~GA~gV~iG 190 (307)
T TIGR03151 141 GGHIGELTTMALVPQV---VDAVSIPVIAAG---------GIADGRGMAAAF-ALGAEAVQMG 190 (307)
T ss_pred CCCCCCCcHHHHHHHH---HHHhCCCEEEEC---------CCCCHHHHHHHH-HcCCCEeecc
Confidence 3333321112222233 244579999866 444544433332 2799999985
No 53
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=90.31 E-value=11 Score=39.36 Aligned_cols=139 Identities=15% Similarity=0.234 Sum_probs=78.8
Q ss_pred ChhcHHhHH-HHHh-cCCEEEEecc-----------CChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhh
Q 006783 449 TTKDLMDLE-FVAS-HADMVGISFV-----------RDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAM 515 (631)
Q Consensus 449 TekD~~dl~-f~~~-~~D~V~~SFV-----------~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~ 515 (631)
+.+|..... .+.+ ++|+|-+.+- ++++.+.++-+.+++. -++.|++||-+....+.+.+++...
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~--~~~pv~vKl~~~~~~~~~~~~a~~l- 185 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA--VDIPLLVKLSPYFDLEDIVELAKAA- 185 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc--cCCCEEEEeCCCCCHHHHHHHHHHH-
Confidence 345544433 3444 5999988652 2445555555555543 2577999988754444555665443
Q ss_pred cCCCCcEEEEecCCcc--c------------c---cChhhHHHHHHHHHHHHHhc--CCCEEEEechhhhhhhCCCCChh
Q 006783 516 KSSNPLGVMIARGDLA--V------------E---CGWERLADMQEEILSICGAA--HVPVIWATQVLESLVKFGVPTRA 576 (631)
Q Consensus 516 ~~~~~DGImIaRGDL~--v------------e---ig~e~l~~~Qk~Ii~~c~aa--gkPvi~ATQvLESM~~~~~PtRA 576 (631)
...|+|+|.+.-+-.+ . . -|+.-.+...+.+-..++.. ++|+|... ++-|..
T Consensus 186 ~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~G---------GI~~~~ 256 (289)
T cd02810 186 ERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVG---------GIDSGE 256 (289)
T ss_pred HHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEEC---------CCCCHH
Confidence 2337899998522110 0 0 12222233444555555556 79998754 455555
Q ss_pred hHHhhhhccccCccccc-----CCccHHH
Q 006783 577 EITDVASARRASCVMLN-----KGKHVVE 600 (631)
Q Consensus 577 EvtDva~a~gaD~vmLs-----kG~ypve 600 (631)
.+.+... .|||+||+. .||+.+.
T Consensus 257 da~~~l~-~GAd~V~vg~a~~~~GP~~~~ 284 (289)
T cd02810 257 DVLEMLM-AGASAVQVATALMWDGPDVIR 284 (289)
T ss_pred HHHHHHH-cCccHheEcHHHHhcCccHHH
Confidence 5444443 699999997 5676644
No 54
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=90.23 E-value=4.6 Score=45.48 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=77.6
Q ss_pred CChhcHHhHHHHHh-cCCEEEEecc--CChhHHHHHHHHHHHhCCCCceEEE-eecChhhhcchHHHHHHhhcCCCCcEE
Q 006783 448 LTTKDLMDLEFVAS-HADMVGISFV--RDSCDIAMLRKELEKRKVQNLGVVL-KIETKSGFERLPHILLEAMKSSNPLGV 523 (631)
Q Consensus 448 LTekD~~dl~f~~~-~~D~V~~SFV--~sa~Dv~~lr~~L~~~~~~~~~Iia-KIEt~~av~NL~eIl~~a~~~~~~DGI 523 (631)
+++.+.+...-.++ ++|+|.+-.. .+.. +.+.-+.+++.- .++.|++ -+-|+++..++-+ + |+|+|
T Consensus 221 ~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~-~~~~i~~i~~~~-~~~~vi~G~v~t~~~a~~l~~----a----Gad~i 290 (450)
T TIGR01302 221 TREFDKERAEALVKAGVDVIVIDSSHGHSIY-VIDSIKEIKKTY-PDLDIIAGNVATAEQAKALID----A----GADGL 290 (450)
T ss_pred CchhHHHHHHHHHHhCCCEEEEECCCCcHhH-HHHHHHHHHHhC-CCCCEEEEeCCCHHHHHHHHH----h----CCCEE
Confidence 34566666666666 7999998654 2232 333333344332 3577777 7899888877644 2 67999
Q ss_pred EEe--cCCccc-----ccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 524 MIA--RGDLAV-----ECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 524 mIa--RGDL~v-----eig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
-|+ +|--.. .+|.+.+ .+..++...|++.++|||.. -++-+.. |++.| .|||+||+.
T Consensus 291 ~vg~g~G~~~~t~~~~~~g~p~~-~~i~~~~~~~~~~~vpviad---------GGi~~~~---di~kAla~GA~~V~~G 356 (450)
T TIGR01302 291 RVGIGPGSICTTRIVAGVGVPQI-TAVYDVAEYAAQSGIPVIAD---------GGIRYSG---DIVKALAAGADAVMLG 356 (450)
T ss_pred EECCCCCcCCccceecCCCccHH-HHHHHHHHHHhhcCCeEEEe---------CCCCCHH---HHHHHHHcCCCEEEEC
Confidence 865 552111 2444444 34455667788899998863 3566654 47666 699999995
No 55
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.06 E-value=2.8 Score=48.05 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=64.4
Q ss_pred HhHHHHHh-cCCEEEEeccCChhH----HHHHHHHHHHhCCCCceEEE-eecChhhhcchHHHHHHhhcCCCCcEEEEec
Q 006783 454 MDLEFVAS-HADMVGISFVRDSCD----IAMLRKELEKRKVQNLGVVL-KIETKSGFERLPHILLEAMKSSNPLGVMIAR 527 (631)
Q Consensus 454 ~dl~f~~~-~~D~V~~SFV~sa~D----v~~lr~~L~~~~~~~~~Iia-KIEt~~av~NL~eIl~~a~~~~~~DGImIaR 527 (631)
+-.+-.++ ++|+|.+. .+... ++.++. +++.-..++.|++ -|.|+++.+.+-+ + |+|+|.|+.
T Consensus 245 ~ra~~Lv~aGvd~i~vd--~a~g~~~~~~~~i~~-ir~~~~~~~~V~aGnV~t~e~a~~li~----a----GAd~I~vg~ 313 (502)
T PRK07107 245 ERVPALVEAGADVLCID--SSEGYSEWQKRTLDW-IREKYGDSVKVGAGNVVDREGFRYLAE----A----GADFVKVGI 313 (502)
T ss_pred HHHHHHHHhCCCeEeec--CcccccHHHHHHHHH-HHHhCCCCceEEeccccCHHHHHHHHH----c----CCCEEEECC
Confidence 33444445 79999987 22222 333332 3332212355555 6999998876632 3 689999954
Q ss_pred CCc-------ccccChhhHHHHHHHHHHHH----HhcC--CCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCcccc
Q 006783 528 GDL-------AVECGWERLADMQEEILSIC----GAAH--VPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVML 592 (631)
Q Consensus 528 GDL-------~veig~e~l~~~Qk~Ii~~c----~aag--kPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmL 592 (631)
|== -.-+|.+.+..+.+ +...| ++.| +|||. ..++-+- .|++.| .|||+||+
T Consensus 314 g~Gs~c~tr~~~~~g~~~~~ai~~-~~~a~~~~~~~~g~~~~via---------dgGir~~---gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 314 GGGSICITREQKGIGRGQATALIE-VAKARDEYFEETGVYIPICS---------DGGIVYD---YHMTLALAMGADFIML 380 (502)
T ss_pred CCCcCcccccccCCCccHHHHHHH-HHHHHHHHHhhcCCcceEEE---------cCCCCch---hHHHHHHHcCCCeeee
Confidence 322 11223333332222 22222 3346 89885 4566553 667777 69999999
Q ss_pred c
Q 006783 593 N 593 (631)
Q Consensus 593 s 593 (631)
.
T Consensus 381 G 381 (502)
T PRK07107 381 G 381 (502)
T ss_pred C
Confidence 6
No 56
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=89.87 E-value=4 Score=44.55 Aligned_cols=124 Identities=17% Similarity=0.160 Sum_probs=76.1
Q ss_pred CCChhcHHhHHHHHh-c--CCEEEEe--ccCChhHHHHHHHHHHHhCCCCceEEEe-ecChhhhcchHHHHHHhhcCCCC
Q 006783 447 GLTTKDLMDLEFVAS-H--ADMVGIS--FVRDSCDIAMLRKELEKRKVQNLGVVLK-IETKSGFERLPHILLEAMKSSNP 520 (631)
Q Consensus 447 ~LTekD~~dl~f~~~-~--~D~V~~S--FV~sa~Dv~~lr~~L~~~~~~~~~IiaK-IEt~~av~NL~eIl~~a~~~~~~ 520 (631)
..++.|.+-++-.++ + +|+|.+- .=.|..-++.++ .+++.- .++.||+= |-|+++.++|-+ + |.
T Consensus 103 G~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik-~ir~~~-p~~~viaGNV~T~e~a~~Li~----a----GA 172 (343)
T TIGR01305 103 GSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVK-LVREAF-PEHTIMAGNVVTGEMVEELIL----S----GA 172 (343)
T ss_pred ccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHH-HHHhhC-CCCeEEEecccCHHHHHHHHH----c----CC
Confidence 346778887776665 3 8999874 333444344443 344432 45778888 999999987643 3 67
Q ss_pred cEEEEe--cCCcccc-----cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccc
Q 006783 521 LGVMIA--RGDLAVE-----CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVM 591 (631)
Q Consensus 521 DGImIa--RGDL~ve-----ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vm 591 (631)
|||.|+ +|--... +|.+.+. +-.++...++..++|||. ..++..- .|++.| .|||+||
T Consensus 173 D~ikVgiGpGSicttR~~~Gvg~pqlt-Av~~~a~aa~~~~v~VIa---------DGGIr~~---gDI~KALA~GAd~VM 239 (343)
T TIGR01305 173 DIVKVGIGPGSVCTTRTKTGVGYPQLS-AVIECADAAHGLKGHIIS---------DGGCTCP---GDVAKAFGAGADFVM 239 (343)
T ss_pred CEEEEcccCCCcccCceeCCCCcCHHH-HHHHHHHHhccCCCeEEE---------cCCcCch---hHHHHHHHcCCCEEE
Confidence 999986 4422111 1222222 222344445556788986 4455553 678887 6999999
Q ss_pred cc
Q 006783 592 LN 593 (631)
Q Consensus 592 Ls 593 (631)
+.
T Consensus 240 lG 241 (343)
T TIGR01305 240 LG 241 (343)
T ss_pred EC
Confidence 95
No 57
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=89.82 E-value=16 Score=38.40 Aligned_cols=116 Identities=16% Similarity=0.235 Sum_probs=64.7
Q ss_pred CCEEEEecc------------CChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEe---c
Q 006783 463 ADMVGISFV------------RDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIA---R 527 (631)
Q Consensus 463 ~D~V~~SFV------------~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIa---R 527 (631)
+|+|-+.+- ++++.+.++-+.+++. -++.|.+||-. .+++..+++... ...|+|+|.|. +
T Consensus 119 ~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~--~~~pv~vKi~~--~~~~~~~~a~~l-~~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 119 VDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDK--TDVPVFAKLSP--NVTDITEIAKAA-EEAGADGLTLINTLR 193 (300)
T ss_pred cCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh--cCCCEEEECCC--ChhhHHHHHHHH-HHcCCCEEEEEccCC
Confidence 788877533 4555555555555543 25789999951 233444444322 23489999884 1
Q ss_pred C---Ccc-------ccc----ChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 528 G---DLA-------VEC----GWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 528 G---DL~-------vei----g~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
| |+. .+. |....+...+.+-...++.++|||... ++=|..++.+... .|||+||+.
T Consensus 194 ~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~G---------GI~s~~da~~~l~-~GAd~V~ig 263 (300)
T TIGR01037 194 GMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVG---------GITSFEDALEFLM-AGASAVQVG 263 (300)
T ss_pred ccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEC---------CCCCHHHHHHHHH-cCCCceeec
Confidence 1 211 111 111222334444455566789999644 4545555444443 699999998
No 58
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=89.78 E-value=1.3 Score=51.16 Aligned_cols=94 Identities=14% Similarity=0.074 Sum_probs=76.1
Q ss_pred CEEEEeccCChhHHHHHHHHHH-------HhC---CCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcc--
Q 006783 464 DMVGISFVRDSCDIAMLRKELE-------KRK---VQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLA-- 531 (631)
Q Consensus 464 D~V~~SFV~sa~Dv~~lr~~L~-------~~~---~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~-- 531 (631)
=-|.+++|.+.+++..+|+.+. ..| .+++.+=.+||+|.|.=..+.++.+. |=+=||=.||.
T Consensus 387 l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakev------DFfSIGTNDLtQY 460 (574)
T COG1080 387 LRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEV------DFFSIGTNDLTQY 460 (574)
T ss_pred eEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHhC------CEeeecccHHHHH
Confidence 3589999999999999998875 222 13677888999999999999999876 99999888874
Q ss_pred ---cccCh-----------hhHHHHHHHHHHHHHhcCCCEEEEech
Q 006783 532 ---VECGW-----------ERLADMQEEILSICGAAHVPVIWATQV 563 (631)
Q Consensus 532 ---veig~-----------e~l~~~Qk~Ii~~c~aagkPvi~ATQv 563 (631)
++=+- +-|-.+.+.++..++++||||.++..|
T Consensus 461 tLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGEl 506 (574)
T COG1080 461 TLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGEL 506 (574)
T ss_pred HHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechhh
Confidence 22222 567778899999999999999988754
No 59
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=89.69 E-value=23 Score=38.44 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=71.3
Q ss_pred cCCEEEEecc----------CChhHHHHHHHHHHHhCCC---CceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecC
Q 006783 462 HADMVGISFV----------RDSCDIAMLRKELEKRKVQ---NLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARG 528 (631)
Q Consensus 462 ~~D~V~~SFV----------~sa~Dv~~lr~~L~~~~~~---~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRG 528 (631)
++|+|-+.|- +.++.+.++-+.+++.-.+ ++.|++||----..+++.+++... ...|+|||.+.=+
T Consensus 169 ~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l-~~~Gadgi~~~nt 247 (344)
T PRK05286 169 YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLA-LEHGIDGVIATNT 247 (344)
T ss_pred hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHH-HHhCCcEEEEeCC
Confidence 5999998763 2334455544444432111 378999997322222355554433 2237899998432
Q ss_pred C-----cc-----ccc----ChhhHHHHHHHHHHHHHhc--CCCEEEEechhhhhhhCCCCChhhHHhhhhccccCcccc
Q 006783 529 D-----LA-----VEC----GWERLADMQEEILSICGAA--HVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVML 592 (631)
Q Consensus 529 D-----L~-----vei----g~e~l~~~Qk~Ii~~c~aa--gkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmL 592 (631)
- +. ... |..--+...+.+-...++. ++|+|-.. ++-|...+-+... .|||+||+
T Consensus 248 ~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~G---------GI~s~eda~e~l~-aGAd~V~v 317 (344)
T PRK05286 248 TLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVG---------GIDSAEDAYEKIR-AGASLVQI 317 (344)
T ss_pred ccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEEC---------CCCCHHHHHHHHH-cCCCHHHH
Confidence 1 10 011 1222233444554555555 58988755 5666666555555 79999999
Q ss_pred c-----CCccHH
Q 006783 593 N-----KGKHVV 599 (631)
Q Consensus 593 s-----kG~ypv 599 (631)
. .||+.+
T Consensus 318 ~~~~~~~gP~~~ 329 (344)
T PRK05286 318 YSGLIYEGPGLV 329 (344)
T ss_pred HHHHHHhCchHH
Confidence 7 467654
No 60
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=89.29 E-value=2.9 Score=45.32 Aligned_cols=124 Identities=19% Similarity=0.272 Sum_probs=74.7
Q ss_pred CCChhcHHhHHHHHh-c--CCEEEEec--cCChhHHHHHHHHHHHhCCCCceEEEe-ecChhhhcchHHHHHHhhcCCCC
Q 006783 447 GLTTKDLMDLEFVAS-H--ADMVGISF--VRDSCDIAMLRKELEKRKVQNLGVVLK-IETKSGFERLPHILLEAMKSSNP 520 (631)
Q Consensus 447 ~LTekD~~dl~f~~~-~--~D~V~~SF--V~sa~Dv~~lr~~L~~~~~~~~~IiaK-IEt~~av~NL~eIl~~a~~~~~~ 520 (631)
..|++|++-+.-.++ + +|+|.+=. =.|..-++.++. +++.- +.+.||++ |-|.+..+.|-+ + |+
T Consensus 90 G~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~-i~~~~-p~~~vi~GnV~t~e~a~~l~~----a----Ga 159 (321)
T TIGR01306 90 GVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKH-IKTHL-PDSFVIAGNVGTPEAVRELEN----A----GA 159 (321)
T ss_pred CCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHH-HHHhC-CCCEEEEecCCCHHHHHHHHH----c----Cc
Confidence 467888888877665 5 69988744 333444444444 44332 45778999 999998877643 3 78
Q ss_pred cEEEEe--cCCc---ccccChhhHHHHH-HHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCcccc
Q 006783 521 LGVMIA--RGDL---AVECGWERLADMQ-EEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVML 592 (631)
Q Consensus 521 DGImIa--RGDL---~veig~e~l~~~Q-k~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmL 592 (631)
|||.|+ +|=- .++.|... +..| .-|...+.+.++|||. .-++-+- .|++.| .|||+||+
T Consensus 160 d~I~V~~G~G~~~~tr~~~g~g~-~~~~l~ai~ev~~a~~~pVIa---------dGGIr~~---~Di~KALa~GAd~Vmi 226 (321)
T TIGR01306 160 DATKVGIGPGKVCITKIKTGFGT-GGWQLAALRWCAKAARKPIIA---------DGGIRTH---GDIAKSIRFGASMVMI 226 (321)
T ss_pred CEEEECCCCCccccceeeeccCC-CchHHHHHHHHHHhcCCeEEE---------ECCcCcH---HHHHHHHHcCCCEEee
Confidence 999987 3321 11111111 1111 2233334455788875 4466664 556666 69999999
Q ss_pred c
Q 006783 593 N 593 (631)
Q Consensus 593 s 593 (631)
.
T Consensus 227 g 227 (321)
T TIGR01306 227 G 227 (321)
T ss_pred c
Confidence 6
No 61
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=88.94 E-value=14 Score=39.17 Aligned_cols=135 Identities=18% Similarity=0.191 Sum_probs=77.1
Q ss_pred hhcHHhHHH-HHh-cCCEEEEecc---------------CChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHH
Q 006783 450 TKDLMDLEF-VAS-HADMVGISFV---------------RDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILL 512 (631)
Q Consensus 450 ekD~~dl~f-~~~-~~D~V~~SFV---------------~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~ 512 (631)
.+|.....- +.+ ++|+|-+.+- ++++.+.++-+.+++. .++.|++||- ..+.++.+++.
T Consensus 112 ~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~--~~~Pv~vKl~--~~~~~~~~~a~ 187 (299)
T cd02940 112 KEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA--VKIPVIAKLT--PNITDIREIAR 187 (299)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh--cCCCeEEECC--CCchhHHHHHH
Confidence 345444433 333 5888877332 3455555555555443 3578999994 24556777766
Q ss_pred HhhcCCCCcEEEE-----ecCCcc-----------------cccChhhHHHHHHHHHHHHHhc--CCCEEEEechhhhhh
Q 006783 513 EAMKSSNPLGVMI-----ARGDLA-----------------VECGWERLADMQEEILSICGAA--HVPVIWATQVLESLV 568 (631)
Q Consensus 513 ~a~~~~~~DGImI-----aRGDL~-----------------veig~e~l~~~Qk~Ii~~c~aa--gkPvi~ATQvLESM~ 568 (631)
.+ ...|+|||.+ +|-++- .=-|....+...+.|-...++. .+|+|-..
T Consensus 188 ~~-~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~G------- 259 (299)
T cd02940 188 AA-KEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIG------- 259 (299)
T ss_pred HH-HHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEEC-------
Confidence 44 2348999974 121111 1112223455566666666666 78888644
Q ss_pred hCCCCChhhHHhhhhccccCccccc-----CCccHH
Q 006783 569 KFGVPTRAEITDVASARRASCVMLN-----KGKHVV 599 (631)
Q Consensus 569 ~~~~PtRAEvtDva~a~gaD~vmLs-----kG~ypv 599 (631)
++-|..++-+... .|||+||+. +|+..+
T Consensus 260 --GI~~~~da~~~l~-aGA~~V~i~ta~~~~g~~~~ 292 (299)
T cd02940 260 --GIESWEDAAEFLL-LGASVVQVCTAVMNQGFTIV 292 (299)
T ss_pred --CCCCHHHHHHHHH-cCCChheEceeecccCCcHH
Confidence 5555555444332 799999997 466543
No 62
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=88.60 E-value=13 Score=39.21 Aligned_cols=149 Identities=13% Similarity=0.177 Sum_probs=78.7
Q ss_pred hhcHHhHHH-HHh-c-CCEEEE------------eccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHh
Q 006783 450 TKDLMDLEF-VAS-H-ADMVGI------------SFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEA 514 (631)
Q Consensus 450 ekD~~dl~f-~~~-~-~D~V~~------------SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a 514 (631)
.+|...... +.+ + +|+|-+ .+-++++-+.++-+.+++.- ++.|++||=- .++++.+++...
T Consensus 103 ~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~--~~~~~~~~a~~l 178 (301)
T PRK07259 103 EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKLTP--NVTDIVEIAKAA 178 (301)
T ss_pred HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEcCC--CchhHHHHHHHH
Confidence 445544433 333 4 899855 33445555555555555432 5789999952 233444554432
Q ss_pred hcCCCCcEEEEe---cC---Ccc-------cccC----hhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhh
Q 006783 515 MKSSNPLGVMIA---RG---DLA-------VECG----WERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAE 577 (631)
Q Consensus 515 ~~~~~~DGImIa---RG---DL~-------veig----~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAE 577 (631)
...|+|||.+- .| |+- ...| ..-.+...+.+-...++.++|||... ++-|..+
T Consensus 179 -~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~G---------GI~~~~d 248 (301)
T PRK07259 179 -EEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMG---------GISSAED 248 (301)
T ss_pred -HHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEEC---------CCCCHHH
Confidence 22378998751 11 221 1111 11122233333344455589999744 5556655
Q ss_pred HHhhhhccccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 578 ITDVASARRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 578 vtDva~a~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
+.+... .|||+||+. .||+.+.- +.+.+-+.|++|
T Consensus 249 a~~~l~-aGAd~V~igr~ll~~P~~~~~--i~~~l~~~~~~~ 287 (301)
T PRK07259 249 AIEFIM-AGASAVQVGTANFYDPYAFPK--IIEGLEAYLDKY 287 (301)
T ss_pred HHHHHH-cCCCceeEcHHHhcCcHHHHH--HHHHHHHHHHHc
Confidence 555543 699999997 56655432 334454556554
No 63
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=88.50 E-value=6.5 Score=43.00 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=78.9
Q ss_pred CCChhcHHhHHHHHh---cCCEEEEe--ccCChhHHHHHHHHHHHhCCCCce-EEEeecChhhhcchHHHHHHhhcCCCC
Q 006783 447 GLTTKDLMDLEFVAS---HADMVGIS--FVRDSCDIAMLRKELEKRKVQNLG-VVLKIETKSGFERLPHILLEAMKSSNP 520 (631)
Q Consensus 447 ~LTekD~~dl~f~~~---~~D~V~~S--FV~sa~Dv~~lr~~L~~~~~~~~~-IiaKIEt~~av~NL~eIl~~a~~~~~~ 520 (631)
..++.|.+-++-.++ ++|+|.+- .=.|..-++.++. +++.- .++. |.--+-|+++.++|-+ + |.
T Consensus 104 G~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~-ik~~~-P~~~vIaGNV~T~e~a~~Li~----a----GA 173 (346)
T PRK05096 104 GTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAK-AREAW-PDKTICAGNVVTGEMVEELIL----S----GA 173 (346)
T ss_pred cCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHHhC-CCCcEEEecccCHHHHHHHHH----c----CC
Confidence 346778877776555 68999873 3344444444443 55443 3444 4456999999988633 3 67
Q ss_pred cEEEEe--cCCcc-----cccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccc
Q 006783 521 LGVMIA--RGDLA-----VECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVM 591 (631)
Q Consensus 521 DGImIa--RGDL~-----veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vm 591 (631)
|+|-|+ +|-.. .-+|.+.+..+. +....++..|+|||- .-++-+- -|++.| .|||+||
T Consensus 174 D~vKVGIGpGSiCtTr~vtGvG~PQltAV~-~~a~~a~~~gvpiIA---------DGGi~~s---GDI~KAlaaGAd~VM 240 (346)
T PRK05096 174 DIVKVGIGPGSVCTTRVKTGVGYPQLSAVI-ECADAAHGLGGQIVS---------DGGCTVP---GDVAKAFGGGADFVM 240 (346)
T ss_pred CEEEEcccCCccccCccccccChhHHHHHH-HHHHHHHHcCCCEEe---------cCCcccc---cHHHHHHHcCCCEEE
Confidence 999864 44322 223445555444 455667888999994 4455553 568877 6999999
Q ss_pred cc
Q 006783 592 LN 593 (631)
Q Consensus 592 Ls 593 (631)
|.
T Consensus 241 lG 242 (346)
T PRK05096 241 LG 242 (346)
T ss_pred eC
Confidence 95
No 64
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.23 E-value=5.9 Score=44.27 Aligned_cols=122 Identities=20% Similarity=0.284 Sum_probs=73.7
Q ss_pred ChhcHHhHHHHHh-cCCEEEE--eccCChhHHHHHHHHHHHhCCCCceEEE-eecChhhhcchHHHHHHhhcCCCCcEEE
Q 006783 449 TTKDLMDLEFVAS-HADMVGI--SFVRDSCDIAMLRKELEKRKVQNLGVVL-KIETKSGFERLPHILLEAMKSSNPLGVM 524 (631)
Q Consensus 449 TekD~~dl~f~~~-~~D~V~~--SFV~sa~Dv~~lr~~L~~~~~~~~~Iia-KIEt~~av~NL~eIl~~a~~~~~~DGIm 524 (631)
++.+.+.++-+++ ++|+|++ +.=. ...+.++-+.+++.- .++.||+ -|-|.++..++.+. |+|+|.
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~-p~~~vi~g~V~T~e~a~~l~~a--------GaD~I~ 220 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGH-STRIIELVKKIKTKY-PNLDLIAGNIVTKEAALDLISV--------GADCLK 220 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhC-CCCcEEEEecCCHHHHHHHHHc--------CCCEEE
Confidence 4556677777666 8999995 3322 344444444455443 3455544 79999988877553 679999
Q ss_pred EecCCccc-------ccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 525 IARGDLAV-------ECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 525 IaRGDL~v-------eig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
++=|-=++ ..|.+.+.. -.++-..|+..++|||. .-++-+..+ ++.| .|||+||+.
T Consensus 221 vG~g~Gs~c~tr~~~g~g~p~lta-i~~v~~~~~~~~vpVIA---------dGGI~~~~D---i~KALalGA~aVmvG 285 (404)
T PRK06843 221 VGIGPGSICTTRIVAGVGVPQITA-ICDVYEVCKNTNICIIA---------DGGIRFSGD---VVKAIAAGADSVMIG 285 (404)
T ss_pred ECCCCCcCCcceeecCCCCChHHH-HHHHHHHHhhcCCeEEE---------eCCCCCHHH---HHHHHHcCCCEEEEc
Confidence 86332111 123333222 22334566677999986 345666544 6666 799999995
No 65
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.88 E-value=6 Score=45.09 Aligned_cols=125 Identities=17% Similarity=0.141 Sum_probs=77.7
Q ss_pred CCChhcHHhHHHHHh-cCCEEEEeccC-ChhHHHHHHHHHHHhCCCCceEEE-eecChhhhcchHHHHHHhhcCCCCcEE
Q 006783 447 GLTTKDLMDLEFVAS-HADMVGISFVR-DSCDIAMLRKELEKRKVQNLGVVL-KIETKSGFERLPHILLEAMKSSNPLGV 523 (631)
Q Consensus 447 ~LTekD~~dl~f~~~-~~D~V~~SFV~-sa~Dv~~lr~~L~~~~~~~~~Iia-KIEt~~av~NL~eIl~~a~~~~~~DGI 523 (631)
..++++.+-+...++ ++|.|++---+ ....+.+.-+.+++.. .++.||| -|-|.++..++.+ + |.|+|
T Consensus 223 ~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~-p~~~v~agnv~t~~~a~~l~~----a----Gad~v 293 (479)
T PRK07807 223 GINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALD-PGVPIVAGNVVTAEGTRDLVE----A----GADIV 293 (479)
T ss_pred ccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHC-CCCeEEeeccCCHHHHHHHHH----c----CCCEE
Confidence 345666666665554 79999884221 1233444444455543 5688999 9999999998865 3 67998
Q ss_pred EEe--cCCccccc-----ChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 524 MIA--RGDLAVEC-----GWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 524 mIa--RGDL~vei-----g~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
=|+ +|-...-- |.+.+. +-.++...|+..++|||- .-++.+... ++.+ .|||+||+.
T Consensus 294 ~vgig~gsictt~~~~~~~~p~~~-av~~~~~~~~~~~~~via---------~ggi~~~~~---~~~al~~ga~~v~~g 359 (479)
T PRK07807 294 KVGVGPGAMCTTRMMTGVGRPQFS-AVLECAAAARELGAHVWA---------DGGVRHPRD---VALALAAGASNVMIG 359 (479)
T ss_pred EECccCCcccccccccCCchhHHH-HHHHHHHHHHhcCCcEEe---------cCCCCCHHH---HHHHHHcCCCeeecc
Confidence 853 43332222 223332 223445556677999996 446666644 5555 699999995
No 66
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.77 E-value=16 Score=39.47 Aligned_cols=131 Identities=14% Similarity=0.147 Sum_probs=70.4
Q ss_pred hhcHHhHHHHH-h-cCCEEEEeccC--C-----hhHH-HHHHHHHHHhC-CCCceEEEeecChhhhcchHHHHHHhhcCC
Q 006783 450 TKDLMDLEFVA-S-HADMVGISFVR--D-----SCDI-AMLRKELEKRK-VQNLGVVLKIETKSGFERLPHILLEAMKSS 518 (631)
Q Consensus 450 ekD~~dl~f~~-~-~~D~V~~SFV~--s-----a~Dv-~~lr~~L~~~~-~~~~~IiaKIEt~~av~NL~eIl~~a~~~~ 518 (631)
..+..++...+ + ++|+|-+.+-. . ..+. ..+.+.++... .-++.|++|+ ++ .+.++.+++... ...
T Consensus 113 ~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl-~p-~~~~~~~~a~~l-~~~ 189 (334)
T PRK07565 113 AGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL-SP-YFSNLANMAKRL-DAA 189 (334)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEe-CC-CchhHHHHHHHH-HHc
Confidence 34444444333 3 68999885422 1 1111 12333333221 1358899997 33 344555665443 334
Q ss_pred CCcEEEEecCCcccccCh--------------hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc
Q 006783 519 NPLGVMIARGDLAVECGW--------------ERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA 584 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~--------------e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a 584 (631)
|+|||.+.=.=.+..+.+ .-.+...+.+-...++.+.|+|-. -++-|..++.....
T Consensus 190 G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~---------GGI~s~~Da~e~l~- 259 (334)
T PRK07565 190 GADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAAT---------TGVHDAEDVIKMLL- 259 (334)
T ss_pred CCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEE---------CCCCCHHHHHHHHH-
Confidence 899998732212222211 223445555555555568998853 36667666555543
Q ss_pred cccCccccc
Q 006783 585 RRASCVMLN 593 (631)
Q Consensus 585 ~gaD~vmLs 593 (631)
.|||+||+.
T Consensus 260 aGA~~V~v~ 268 (334)
T PRK07565 260 AGADVVMIA 268 (334)
T ss_pred cCCCceeee
Confidence 799999998
No 67
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=86.44 E-value=34 Score=36.88 Aligned_cols=128 Identities=19% Similarity=0.207 Sum_probs=70.8
Q ss_pred cCCEEEEecc----------CChhHHHHHHHHHHHhC---CCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEE-ec
Q 006783 462 HADMVGISFV----------RDSCDIAMLRKELEKRK---VQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMI-AR 527 (631)
Q Consensus 462 ~~D~V~~SFV----------~sa~Dv~~lr~~L~~~~---~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImI-aR 527 (631)
.+|+|-+.|- +.++.+.++-+.+++.- ..++.|++||---...+++.+++... ...|+|||-+ .|
T Consensus 160 ~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l-~~aGad~I~~~n~ 238 (327)
T cd04738 160 YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVA-LEHGVDGIIATNT 238 (327)
T ss_pred hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHH-HHcCCcEEEEECC
Confidence 5899888761 22345555444444321 12478999994222223455554432 2238899986 32
Q ss_pred C---------Cccccc----ChhhHHHHHHHHHHHHHhc--CCCEEEEechhhhhhhCCCCChhhHHhhhhccccCcccc
Q 006783 528 G---------DLAVEC----GWERLADMQEEILSICGAA--HVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVML 592 (631)
Q Consensus 528 G---------DL~vei----g~e~l~~~Qk~Ii~~c~aa--gkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmL 592 (631)
- .+.... |...-+...+.+-...++. ++|+|.+. ++=|..++.+... .|||+||+
T Consensus 239 ~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~G---------GI~t~~da~e~l~-aGAd~V~v 308 (327)
T cd04738 239 TISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVG---------GISSGEDAYEKIR-AGASLVQL 308 (327)
T ss_pred cccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEEC---------CCCCHHHHHHHHH-cCCCHHhc
Confidence 0 011111 2223344455555555555 68988754 5666666655554 79999999
Q ss_pred c-----CCccHHH
Q 006783 593 N-----KGKHVVE 600 (631)
Q Consensus 593 s-----kG~ypve 600 (631)
. .||+.+.
T Consensus 309 g~~~~~~gP~~~~ 321 (327)
T cd04738 309 YTGLVYEGPGLVK 321 (327)
T ss_pred cHHHHhhCcHHHH
Confidence 7 5776643
No 68
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=85.90 E-value=13 Score=40.54 Aligned_cols=123 Identities=17% Similarity=0.233 Sum_probs=69.3
Q ss_pred ChhcHHhHHHHHh-cC--CEEEEeccC-ChhHHHHHHHHHHHhCCCCceEEEe-ecChhhhcchHHHHHHhhcCCCCcEE
Q 006783 449 TTKDLMDLEFVAS-HA--DMVGISFVR-DSCDIAMLRKELEKRKVQNLGVVLK-IETKSGFERLPHILLEAMKSSNPLGV 523 (631)
Q Consensus 449 TekD~~dl~f~~~-~~--D~V~~SFV~-sa~Dv~~lr~~L~~~~~~~~~IiaK-IEt~~av~NL~eIl~~a~~~~~~DGI 523 (631)
+++|.+-+.-.++ ++ |+|++---. ..+.+.++-+.+++.- ++..||++ |-|.+...++.+ + |+|+|
T Consensus 95 ~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~-p~~~vi~g~V~t~e~a~~l~~----a----Gad~i 165 (326)
T PRK05458 95 KDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHL-PETFVIAGNVGTPEAVRELEN----A----GADAT 165 (326)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhC-CCCeEEEEecCCHHHHHHHHH----c----CcCEE
Confidence 4566665555554 44 999983221 2233444344454432 45789997 999998877754 2 78999
Q ss_pred EEe--cCCcccc---cChhhHHHHHHH-HHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 524 MIA--RGDLAVE---CGWERLADMQEE-ILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 524 mIa--RGDL~ve---ig~e~l~~~Qk~-Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
.++ .|=-..+ .|. ..+..|-. +...+++.++|||- .-++-+..+ ++.+ .|||+||+.
T Consensus 166 ~vg~~~G~~~~t~~~~g~-~~~~w~l~ai~~~~~~~~ipVIA---------dGGI~~~~D---i~KaLa~GA~aV~vG 230 (326)
T PRK05458 166 KVGIGPGKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIA---------DGGIRTHGD---IAKSIRFGATMVMIG 230 (326)
T ss_pred EECCCCCcccccccccCC-CCCccHHHHHHHHHHHcCCCEEE---------eCCCCCHHH---HHHHHHhCCCEEEec
Confidence 976 2211011 111 01111221 22223445799885 446777655 5555 599999996
No 69
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=85.71 E-value=3.7 Score=50.02 Aligned_cols=133 Identities=15% Similarity=0.078 Sum_probs=94.1
Q ss_pred CCCChhcHHhHHHHHh-----cCC---EEEEeccCChhHHHHHHHHHH--------HhCC-CCceEEEeecChhhhcchH
Q 006783 446 EGLTTKDLMDLEFVAS-----HAD---MVGISFVRDSCDIAMLRKELE--------KRKV-QNLGVVLKIETKSGFERLP 508 (631)
Q Consensus 446 p~LTekD~~dl~f~~~-----~~D---~V~~SFV~sa~Dv~~lr~~L~--------~~~~-~~~~IiaKIEt~~av~NL~ 508 (631)
|.+.+-..+.|-.|.. +.+ -|.++||.+.++++.+++.+. +.|. -++.|=.+||+|.|.--.|
T Consensus 676 pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal~ad 755 (879)
T PRK09279 676 PEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAALTAD 755 (879)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHHhHH
Confidence 4455555555544332 222 399999999999999998764 2232 1467899999999999999
Q ss_pred HHHHHhhcCCCCcEEEEecCCcccc------------------------cCh-----hhHHHHHHHHHHHHHh--cCCCE
Q 006783 509 HILLEAMKSSNPLGVMIARGDLAVE------------------------CGW-----ERLADMQEEILSICGA--AHVPV 557 (631)
Q Consensus 509 eIl~~a~~~~~~DGImIaRGDL~ve------------------------ig~-----e~l~~~Qk~Ii~~c~a--agkPv 557 (631)
+|+..+ |.+-|+=-||.-- -|| +-|-...+.++..|++ .|+||
T Consensus 756 ~iA~~a------dFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~v 829 (879)
T PRK09279 756 EIAEEA------EFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKL 829 (879)
T ss_pred HHHHhC------CEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEE
Confidence 999876 9999976665421 122 3577778888999998 79999
Q ss_pred EEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 558 IWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 558 i~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
.++.++ .+.|.-.+ .....|.|.|-.|
T Consensus 830 gICGE~------ggdp~~i~---~l~~lGld~vS~s 856 (879)
T PRK09279 830 GICGEH------GGDPASIE---FCHKVGLDYVSCS 856 (879)
T ss_pred EECCCC------ccCHHHHH---HHHHCCCCEEEEC
Confidence 998764 24555444 5666788876655
No 70
>PLN02826 dihydroorotate dehydrogenase
Probab=84.98 E-value=35 Score=38.34 Aligned_cols=139 Identities=18% Similarity=0.176 Sum_probs=70.3
Q ss_pred cCCEEEEec----------cCChhHHHHHHHHHHHhC-------CCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEE
Q 006783 462 HADMVGISF----------VRDSCDIAMLRKELEKRK-------VQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVM 524 (631)
Q Consensus 462 ~~D~V~~SF----------V~sa~Dv~~lr~~L~~~~-------~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGIm 524 (631)
.+|+|-+.+ .+..+.+.++-+.+.+.. ..++.|++||=--..-+.+++|+..+. ..|+|||+
T Consensus 216 ~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~-~~G~dGIi 294 (409)
T PLN02826 216 YADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAL-ALGIDGLI 294 (409)
T ss_pred hCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHH-HcCCCEEE
Confidence 599988752 233444444444333210 124789999932222234455554332 23899998
Q ss_pred Ee-----c-CCcc-----cccC-h---hhHHHHHHHHHHHHHhc--CCCEEEEechhhhhhhCCCCChhhHHhhhhc--c
Q 006783 525 IA-----R-GDLA-----VECG-W---ERLADMQEEILSICGAA--HVPVIWATQVLESLVKFGVPTRAEITDVASA--R 585 (631)
Q Consensus 525 Ia-----R-GDL~-----veig-~---e~l~~~Qk~Ii~~c~aa--gkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~ 585 (631)
+. | +|+- .+.| + .-.+...+.+-...++. ..|+|-.+- +=| -.|++.. .
T Consensus 295 ~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGG---------I~s---g~Da~e~i~A 362 (409)
T PLN02826 295 ISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGG---------VSS---GEDAYKKIRA 362 (409)
T ss_pred EEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECC---------CCC---HHHHHHHHHh
Confidence 84 4 3331 1222 1 22233344444444444 478887553 333 3355555 6
Q ss_pred ccCccccc-----CCccHHHHHHHHHHHHHHHhhc
Q 006783 586 RASCVMLN-----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 586 gaD~vmLs-----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
||++|.+- .||+.+. +..+.+.+.|+++
T Consensus 363 GAs~VQv~Ta~~~~Gp~~i~--~I~~eL~~~l~~~ 395 (409)
T PLN02826 363 GASLVQLYTAFAYEGPALIP--RIKAELAACLERD 395 (409)
T ss_pred CCCeeeecHHHHhcCHHHHH--HHHHHHHHHHHHc
Confidence 99999986 5775322 2233343445544
No 71
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=84.51 E-value=19 Score=36.16 Aligned_cols=130 Identities=17% Similarity=0.199 Sum_probs=69.0
Q ss_pred cHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChh-----------hhcchHHHHHHhhcCCC
Q 006783 452 DLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKS-----------GFERLPHILLEAMKSSN 519 (631)
Q Consensus 452 D~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~-----------av~NL~eIl~~a~~~~~ 519 (631)
+.++++..++ ++|.|.++..- .+|...+++..++.+.+.+ +.-|..+. .-.+..+++... ...|
T Consensus 84 ~~e~~~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g~~~i--~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g 159 (234)
T cd04732 84 SLEDIERLLDLGVSRVIIGTAA-VKNPELVKELLKEYGGERI--VVGLDAKDGKVATKGWLETSEVSLEELAKRF-EELG 159 (234)
T ss_pred CHHHHHHHHHcCCCEEEECchH-HhChHHHHHHHHHcCCceE--EEEEEeeCCEEEECCCeeecCCCHHHHHHHH-HHcC
Confidence 3455565555 79998876442 2344445555555442222 22221110 112333433322 1236
Q ss_pred CcEEEEe-cCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----C
Q 006783 520 PLGVMIA-RGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----K 594 (631)
Q Consensus 520 ~DGImIa-RGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----k 594 (631)
++++.+- +.-=+..-| .. .+.+-..++...+|++.+. ++-+..++..+.. .|+|++|+. +
T Consensus 160 a~~iii~~~~~~g~~~g-~~----~~~i~~i~~~~~ipvi~~G---------Gi~~~~di~~~~~-~Ga~gv~vg~~~~~ 224 (234)
T cd04732 160 VKAIIYTDISRDGTLSG-PN----FELYKELAAATGIPVIASG---------GVSSLDDIKALKE-LGVAGVIVGKALYE 224 (234)
T ss_pred CCEEEEEeecCCCccCC-CC----HHHHHHHHHhcCCCEEEec---------CCCCHHHHHHHHH-CCCCEEEEeHHHHc
Confidence 7898884 222222223 12 2233344566689999855 6777777776655 499999997 7
Q ss_pred CccHHH
Q 006783 595 GKHVVE 600 (631)
Q Consensus 595 G~ypve 600 (631)
|+++.+
T Consensus 225 ~~~~~~ 230 (234)
T cd04732 225 GKITLE 230 (234)
T ss_pred CCCCHH
Confidence 777644
No 72
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=84.14 E-value=5.7 Score=41.34 Aligned_cols=97 Identities=19% Similarity=0.155 Sum_probs=60.8
Q ss_pred CChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHH
Q 006783 472 RDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICG 551 (631)
Q Consensus 472 ~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~ 551 (631)
=+.++..+|.++.+++| +..++-.=..++++-|+++ +++.+=||-+||. --.++..|.
T Consensus 53 l~~e~~~~L~~~~~~~g---i~f~stpfd~~s~d~l~~~--------~~~~~KIaS~dl~-----------n~~lL~~~A 110 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELG---IDFFSTPFDEESVDFLEEL--------GVPAYKIASGDLT-----------NLPLLEYIA 110 (241)
T ss_dssp S-HHHHHHHHHHHHHTT----EEEEEE-SHHHHHHHHHH--------T-SEEEE-GGGTT------------HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC---CEEEECCCCHHHHHHHHHc--------CCCEEEecccccc-----------CHHHHHHHH
Confidence 36678888888888776 6677766667777666444 4689999988887 224677888
Q ss_pred hcCCCEEEEechhhhhhhCCCCChhhHHhhhhcc---c-cCccccc-CCccHH
Q 006783 552 AAHVPVIWATQVLESLVKFGVPTRAEITDVASAR---R-ASCVMLN-KGKHVV 599 (631)
Q Consensus 552 aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~---g-aD~vmLs-kG~ypv 599 (631)
+-|||||++| |.-|-+||.++.... | .+.++|- .-.||.
T Consensus 111 ~tgkPvIlST---------G~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~ 154 (241)
T PF03102_consen 111 KTGKPVILST---------GMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPT 154 (241)
T ss_dssp TT-S-EEEE----------TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS-
T ss_pred HhCCcEEEEC---------CCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCC
Confidence 8999999988 788999998877774 4 4444443 666774
No 73
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=83.52 E-value=15 Score=41.84 Aligned_cols=120 Identities=17% Similarity=0.143 Sum_probs=70.9
Q ss_pred cHHhHHHHHh-cCCEEEEe--ccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecC
Q 006783 452 DLMDLEFVAS-HADMVGIS--FVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARG 528 (631)
Q Consensus 452 D~~dl~f~~~-~~D~V~~S--FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRG 528 (631)
+.+.++..++ ++|+|.+- .-++ ..+....+.+++...+-..|+.-|-|.+...++-+. |+|+|-++=|
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~-~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a--------Gad~i~vg~g 299 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHS-EGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA--------GADAVKVGIG 299 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcc-hhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc--------CCCEEEECCC
Confidence 3555666555 79988653 2222 344444455554431224466779999888777542 6799987533
Q ss_pred Cccc-------ccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 529 DLAV-------ECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 529 DL~v-------eig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
-=+. ..|.+.+ .+-.++...|++.++|+|. .-++-+- .|++.| .|||+||+.
T Consensus 300 ~gs~~~~r~~~~~g~p~~-~~~~~~~~~~~~~~~~via---------dGGi~~~---~di~kAla~GA~~v~~G 360 (486)
T PRK05567 300 PGSICTTRIVAGVGVPQI-TAIADAAEAAKKYGIPVIA---------DGGIRYS---GDIAKALAAGASAVMLG 360 (486)
T ss_pred CCccccceeecCCCcCHH-HHHHHHHHHhccCCCeEEE---------cCCCCCH---HHHHHHHHhCCCEEEEC
Confidence 2121 1222222 2333445666677899885 4566665 457776 699999995
No 74
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=83.44 E-value=21 Score=36.62 Aligned_cols=136 Identities=17% Similarity=0.132 Sum_probs=78.7
Q ss_pred hHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccc
Q 006783 455 DLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVE 533 (631)
Q Consensus 455 dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve 533 (631)
.++...+ ++|+|.+=+--+...+.+..+.+++.| ..++|...-+| .++.+.+++... .+|.|++ ++++
T Consensus 80 ~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G-~~~gval~p~t--~~e~l~~~l~~~----~vD~Vl~----m~v~ 148 (228)
T PTZ00170 80 WVDDFAKAGASQFTFHIEATEDDPKAVARKIREAG-MKVGVAIKPKT--PVEVLFPLIDTD----LVDMVLV----MTVE 148 (228)
T ss_pred HHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC-CeEEEEECCCC--CHHHHHHHHccc----hhhhHHh----hhcc
Confidence 3444444 899998865544433777777777777 34666555555 688888887322 3588886 7888
Q ss_pred cChhhHH---HHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHHHHH
Q 006783 534 CGWERLA---DMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVSTLD 606 (631)
Q Consensus 534 ig~e~l~---~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~~L~ 606 (631)
.|+..-. ..-++|-...+..+.--|+.+ |-=+...+..+ ...|+|.+.+. +-+.|.++++.+.
T Consensus 149 pG~~gq~~~~~~~~ki~~~~~~~~~~~I~Vd---------GGI~~~ti~~~-~~aGad~iVvGsaI~~a~d~~~~~~~i~ 218 (228)
T PTZ00170 149 PGFGGQSFMHDMMPKVRELRKRYPHLNIQVD---------GGINLETIDIA-ADAGANVIVAGSSIFKAKDRKQAIELLR 218 (228)
T ss_pred cCCCCcEecHHHHHHHHHHHHhcccCeEEEC---------CCCCHHHHHHH-HHcCCCEEEEchHHhCCCCHHHHHHHHH
Confidence 7763221 112233222222222122211 22333333322 22589988876 4567999998888
Q ss_pred HHHHH
Q 006783 607 KILHI 611 (631)
Q Consensus 607 ~Il~r 611 (631)
+.+++
T Consensus 219 ~~~~~ 223 (228)
T PTZ00170 219 ESVQK 223 (228)
T ss_pred HHHHH
Confidence 87765
No 75
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=83.44 E-value=4.9 Score=46.78 Aligned_cols=114 Identities=16% Similarity=0.138 Sum_probs=87.1
Q ss_pred EEEEeccCChhHHHHHHHHHHHh-------C---CCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCc----
Q 006783 465 MVGISFVRDSCDIAMLRKELEKR-------K---VQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDL---- 530 (631)
Q Consensus 465 ~V~~SFV~sa~Dv~~lr~~L~~~-------~---~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL---- 530 (631)
-|.+++|.+.+++++.++++.+. + ...+.|=++||-|..+-.||++... +|=|=||-.||
T Consensus 561 ~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~------vDFvSVGtNDL~Qyl 634 (756)
T COG3605 561 RILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKR------VDFVSVGTNDLTQYL 634 (756)
T ss_pred eeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhh------CCEEEecchHHHHHH
Confidence 37889999999999999988743 2 1346678899999999999999875 49999998887
Q ss_pred -ccccChh-----------hHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 531 -AVECGWE-----------RLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 531 -~veig~e-----------~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
+|+=|-. .+-.+-|+|...|..+|+||-++.+|- +.|--|- +-.+.|.+.+-.|
T Consensus 635 lAvDR~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEMA------g~Pl~A~---~LigLGfrslSMn 700 (756)
T COG3605 635 LAVDRNNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEMA------GDPLSAM---ALIGLGFRSLSMN 700 (756)
T ss_pred HHHhcCCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhhc------CChHHHH---HHHhcCcCccccC
Confidence 4444443 444567899999999999999887654 4554332 3344688888776
No 76
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=83.16 E-value=16 Score=34.26 Aligned_cols=119 Identities=18% Similarity=0.093 Sum_probs=64.7
Q ss_pred HHHHh-cCCEEEEeccCCh--hHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccc
Q 006783 457 EFVAS-HADMVGISFVRDS--CDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVE 533 (631)
Q Consensus 457 ~f~~~-~~D~V~~SFV~sa--~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve 533 (631)
+++.+ ++|+|-+...... +...++.+.+.+.- .+..++.++.+....... .+... +.|.|.+..+.-+-.
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~~~--~~~~~----g~d~i~~~~~~~~~~ 150 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYLAREDLELIRELREAV-PDVKVVVKLSPTGELAAA--AAEEA----GVDEVGLGNGGGGGG 150 (200)
T ss_pred HHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEECCCCccchh--hHHHc----CCCEEEEcCCcCCCC
Confidence 45555 7999999877631 12222222233221 257899999765443321 13333 679999987755432
Q ss_pred cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 534 CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 534 ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
..... +.....+....+..++|++.+. ++-+...+..+.. .|||+++++
T Consensus 151 ~~~~~-~~~~~~~~~~~~~~~~pi~~~G---------Gi~~~~~~~~~~~-~Gad~v~vg 199 (200)
T cd04722 151 GRDAV-PIADLLLILAKRGSKVPVIAGG---------GINDPEDAAEALA-LGADGVIVG 199 (200)
T ss_pred CccCc-hhHHHHHHHHHhcCCCCEEEEC---------CCCCHHHHHHHHH-hCCCEEEec
Confidence 22111 1111222233456789999865 4544444444444 499999875
No 77
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=82.92 E-value=21 Score=36.65 Aligned_cols=131 Identities=14% Similarity=0.084 Sum_probs=84.5
Q ss_pred hHHHHHh-cCCEEEEeccC----------ChhHHHHHHHHHHHhCCCCceEEE-------ee---c---ChhhhcchHHH
Q 006783 455 DLEFVAS-HADMVGISFVR----------DSCDIAMLRKELEKRKVQNLGVVL-------KI---E---TKSGFERLPHI 510 (631)
Q Consensus 455 dl~f~~~-~~D~V~~SFV~----------sa~Dv~~lr~~L~~~~~~~~~Iia-------KI---E---t~~av~NL~eI 510 (631)
.++++.+ +.|.|-+++.. +.+++..+++.+++.|.. +.-++ -+ + ..++++++..+
T Consensus 21 ~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~-i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~ 99 (284)
T PRK13210 21 RLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVR-IPSMCLSGHRRFPFGSRDPATRERALEIMKKA 99 (284)
T ss_pred HHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCC-ceEEecccccCcCCCCCCHHHHHHHHHHHHHH
Confidence 4677777 79999888643 456799999999988732 21111 01 1 13467788888
Q ss_pred HHHhhcCCCCcEEEEecCCcc----cccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccc
Q 006783 511 LLEAMKSSNPLGVMIARGDLA----VECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARR 586 (631)
Q Consensus 511 l~~a~~~~~~DGImIaRGDL~----veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~g 586 (631)
+..+ +.-|+..|.+.-++.. -+-.++++...-+++...++++|+.+. +|.+-..-.++.++..++..+.+
T Consensus 100 i~~a-~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~-----lE~~~~~~~~~~~~~~~l~~~v~ 173 (284)
T PRK13210 100 IRLA-QDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA-----VEIMDTPFMNSISKWKKWDKEID 173 (284)
T ss_pred HHHH-HHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE-----EEecCccccCCHHHHHHHHHHcC
Confidence 7666 2336677877533321 122345666777788888999998766 46665556778888887777655
Q ss_pred cCcccc
Q 006783 587 ASCVML 592 (631)
Q Consensus 587 aD~vmL 592 (631)
.+.+-+
T Consensus 174 ~~~~~~ 179 (284)
T PRK13210 174 SPWLTV 179 (284)
T ss_pred CCceeE
Confidence 444433
No 78
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=82.22 E-value=5.8 Score=40.16 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=46.9
Q ss_pred CChhcHHh-HHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEE----eecChh-hhcchHHHHHHhhcCCCC
Q 006783 448 LTTKDLMD-LEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVL----KIETKS-GFERLPHILLEAMKSSNP 520 (631)
Q Consensus 448 LTekD~~d-l~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~Iia----KIEt~~-av~NL~eIl~~a~~~~~~ 520 (631)
++.+.++. ...+.+ ++|||.++|.. +++.+++..+.. .+.+++ ++.|.+ .++|+.+.+.. |.
T Consensus 140 ~~~~~i~~~~~~a~~~GaD~Ik~~~~~---~~~~~~~i~~~~---~~pvv~~GG~~~~~~~~~l~~~~~~~~~-----Ga 208 (235)
T cd00958 140 KDPDLIAYAARIGAELGADIVKTKYTG---DAESFKEVVEGC---PVPVVIAGGPKKDSEEEFLKMVYDAMEA-----GA 208 (235)
T ss_pred cCHHHHHHHHHHHHHHCCCEEEecCCC---CHHHHHHHHhcC---CCCEEEeCCCCCCCHHHHHHHHHHHHHc-----CC
Confidence 55555554 344555 79999999865 455555544432 233433 334433 56788887753 68
Q ss_pred cEEEEecCCcccc
Q 006783 521 LGVMIARGDLAVE 533 (631)
Q Consensus 521 DGImIaRGDL~ve 533 (631)
+||.++|.=+.-+
T Consensus 209 ~gv~vg~~i~~~~ 221 (235)
T cd00958 209 AGVAVGRNIFQRP 221 (235)
T ss_pred cEEEechhhhcCC
Confidence 9999998866555
No 79
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=81.96 E-value=19 Score=37.32 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=73.5
Q ss_pred CCChhcHHhHH-HHHhcCCEEEEec----------------cCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHH
Q 006783 447 GLTTKDLMDLE-FVASHADMVGISF----------------VRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPH 509 (631)
Q Consensus 447 ~LTekD~~dl~-f~~~~~D~V~~SF----------------V~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~e 509 (631)
.-|.++...+. .+.+++|+|-+.+ .++++-+.++-+.+.+ .+..|.+||=-----.+..+
T Consensus 76 ~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~---~~~PVsvKiR~~~~~~~~~~ 152 (231)
T TIGR00736 76 FVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE---LNKPIFVKIRGNCIPLDELI 152 (231)
T ss_pred cCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc---CCCcEEEEeCCCCCcchHHH
Confidence 34556665553 3445789888863 3455555555555552 25789999964211112234
Q ss_pred HHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHH-hcC-CCEEEEechhhhhhhCCCCChhhHHhhhhcccc
Q 006783 510 ILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICG-AAH-VPVIWATQVLESLVKFGVPTRAEITDVASARRA 587 (631)
Q Consensus 510 Il~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~-aag-kPvi~ATQvLESM~~~~~PtRAEvtDva~a~ga 587 (631)
+.... ...|.|+|.|--+.- | -+.+.-+.++..+ +.+ +|||- +.++-|...+-...+ .||
T Consensus 153 ~a~~l-~~aGad~i~Vd~~~~----g---~~~a~~~~I~~i~~~~~~ipIIg---------NGgI~s~eda~e~l~-~GA 214 (231)
T TIGR00736 153 DALNL-VDDGFDGIHVDAMYP----G---KPYADMDLLKILSEEFNDKIIIG---------NNSIDDIESAKEMLK-AGA 214 (231)
T ss_pred HHHHH-HHcCCCEEEEeeCCC----C---CchhhHHHHHHHHHhcCCCcEEE---------ECCcCCHHHHHHHHH-hCC
Confidence 43322 233899999942221 1 1112333344444 444 89885 567778777777666 699
Q ss_pred CcccccCC
Q 006783 588 SCVMLNKG 595 (631)
Q Consensus 588 D~vmLskG 595 (631)
|+||+..|
T Consensus 215 d~VmvgR~ 222 (231)
T TIGR00736 215 DFVSVARA 222 (231)
T ss_pred CeEEEcHh
Confidence 99999743
No 80
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=81.38 E-value=4.3 Score=49.06 Aligned_cols=95 Identities=22% Similarity=0.259 Sum_probs=71.4
Q ss_pred EEEEeccCChhHHHHHHHHHHHhCC-------CCceEEEeecChhhhcchHHHHHHhhc---------C-CCCcEEEEec
Q 006783 465 MVGISFVRDSCDIAMLRKELEKRKV-------QNLGVVLKIETKSGFERLPHILLEAMK---------S-SNPLGVMIAR 527 (631)
Q Consensus 465 ~V~~SFV~sa~Dv~~lr~~L~~~~~-------~~~~IiaKIEt~~av~NL~eIl~~a~~---------~-~~~DGImIaR 527 (631)
-..+|+.+++.||.++--+.+..|. ..+.|+.=.||.+.++|-++|+..-.. . .+.--||||-
T Consensus 366 ~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMlGY 445 (794)
T PF00311_consen 366 RYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVMLGY 445 (794)
T ss_dssp EEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEEEC
T ss_pred HheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEecc
Confidence 4578999999999999887776654 247899999999999999999976421 1 1235899999
Q ss_pred CCcccccCh----hhHHHHHHHHHHHHHhcCCCEEE
Q 006783 528 GDLAVECGW----ERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 528 GDL~veig~----e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
.|=+=+-|+ -.+..+|+++...|+++|+.+.+
T Consensus 446 SDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~ 481 (794)
T PF00311_consen 446 SDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRF 481 (794)
T ss_dssp CCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEE
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 998888887 58999999999999999999876
No 81
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=80.04 E-value=26 Score=36.13 Aligned_cols=56 Identities=27% Similarity=0.260 Sum_probs=38.5
Q ss_pred CceEEEeec-Ch---hhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEE
Q 006783 491 NLGVVLKIE-TK---SGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWA 560 (631)
Q Consensus 491 ~~~IiaKIE-t~---~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~A 560 (631)
++.++.+.. ++ .|++++=+-+..+ |+|||+|- ||. +| -.++++..|+++|...|++
T Consensus 76 ~~pv~lm~y~n~~~~~G~~~fi~~~~~a----G~~giiip--Dl~----~e----e~~~~~~~~~~~g~~~i~~ 135 (242)
T cd04724 76 TIPIVLMGYYNPILQYGLERFLRDAKEA----GVDGLIIP--DLP----PE----EAEEFREAAKEYGLDLIFL 135 (242)
T ss_pred CCCEEEEEecCHHHHhCHHHHHHHHHHC----CCcEEEEC--CCC----HH----HHHHHHHHHHHcCCcEEEE
Confidence 456677666 43 3456665555555 88999995 664 33 4578999999999977764
No 82
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=79.96 E-value=23 Score=40.44 Aligned_cols=121 Identities=18% Similarity=0.095 Sum_probs=74.3
Q ss_pred CChhcHHhHHHHHh-cCCEEEE--eccCChhHHHHHHHHHHHhCCCCceEEEe-ecChhhhcchHHHHHHhhcCCCCcEE
Q 006783 448 LTTKDLMDLEFVAS-HADMVGI--SFVRDSCDIAMLRKELEKRKVQNLGVVLK-IETKSGFERLPHILLEAMKSSNPLGV 523 (631)
Q Consensus 448 LTekD~~dl~f~~~-~~D~V~~--SFV~sa~Dv~~lr~~L~~~~~~~~~IiaK-IEt~~av~NL~eIl~~a~~~~~~DGI 523 (631)
+++++.+-+...++ ++|.|++ +.-++ +-+..+-+.+++.. .++.||+= +-|.++..+|-+ + |+|+|
T Consensus 222 ~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~~-~~~~vi~g~~~t~~~~~~l~~----~----G~d~i 291 (475)
T TIGR01303 222 INGDVGGKAKALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRALD-LGVPIVAGNVVSAEGVRDLLE----A----GANII 291 (475)
T ss_pred eCccHHHHHHHHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHHC-CCCeEEEeccCCHHHHHHHHH----h----CCCEE
Confidence 44555555555444 7999987 44333 44444445565543 45778887 888888887754 2 67998
Q ss_pred EEe---------cCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCcccc
Q 006783 524 MIA---------RGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVML 592 (631)
Q Consensus 524 mIa---------RGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmL 592 (631)
=|+ |+-.++ |.+.+. .--+....|+.+++|||- .-++.+. .|++.| .|||+||+
T Consensus 292 ~vg~g~Gs~~ttr~~~~~--g~~~~~-a~~~~~~~~~~~~~~via---------dGgi~~~---~di~kala~GA~~vm~ 356 (475)
T TIGR01303 292 KVGVGPGAMCTTRMMTGV--GRPQFS-AVLECAAEARKLGGHVWA---------DGGVRHP---RDVALALAAGASNVMV 356 (475)
T ss_pred EECCcCCccccCccccCC--CCchHH-HHHHHHHHHHHcCCcEEE---------eCCCCCH---HHHHHHHHcCCCEEee
Confidence 653 322222 223322 223444555777999885 4566665 457766 69999999
Q ss_pred c
Q 006783 593 N 593 (631)
Q Consensus 593 s 593 (631)
.
T Consensus 357 g 357 (475)
T TIGR01303 357 G 357 (475)
T ss_pred c
Confidence 6
No 83
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=79.81 E-value=5.5 Score=47.71 Aligned_cols=113 Identities=19% Similarity=0.055 Sum_probs=88.2
Q ss_pred EEEEeccCChhHHHHHHHHHH--HhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccc---------
Q 006783 465 MVGISFVRDSCDIAMLRKELE--KRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVE--------- 533 (631)
Q Consensus 465 ~V~~SFV~sa~Dv~~lr~~L~--~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve--------- 533 (631)
.+.++|+++........ .+. ..+..+..+..+||.+.++-..+||+... |++=|+-+||.--
T Consensus 597 ~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~------d~~S~gtndltq~tlg~~rd~~ 669 (740)
T COG0574 597 EIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAEYF------DGFSIGSNDLTQLTLGLDRDSE 669 (740)
T ss_pred EEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHhhc------ccceecccccccceeeeecccc
Confidence 35667999999888877 443 11112388999999999999999999874 9999999998632
Q ss_pred ---cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 534 ---CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 534 ---ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
.-.+.+-.+-+..+..|+..++.+.++.|. |+..+.-..+.-.|.|+|+.|
T Consensus 670 ~~~~~~~~v~~li~~a~~~~~~~~~~~~icG~~---------~~~p~~a~~~~e~Gi~~Vs~n 723 (740)
T COG0574 670 LFDERDPAVLKLIIIAIKAADSGGLLVGICGQA---------PSDPHGAIFLVELGIDSVSLN 723 (740)
T ss_pred ccccccccHHHHHHHHHhcccccCcEEEEeccC---------CCCcHHHHHHHHcCCCeEecC
Confidence 223578888889999999999999999984 444555557777899999966
No 84
>PRK15452 putative protease; Provisional
Probab=79.67 E-value=15 Score=41.58 Aligned_cols=124 Identities=12% Similarity=0.158 Sum_probs=77.3
Q ss_pred hhcHHhHHHHHh-cCCEEEEecc----------CChhHHHHHHHHHHHhCCCCceEEEe---ecChhhhcchHHHHHHhh
Q 006783 450 TKDLMDLEFVAS-HADMVGISFV----------RDSCDIAMLRKELEKRKVQNLGVVLK---IETKSGFERLPHILLEAM 515 (631)
Q Consensus 450 ekD~~dl~f~~~-~~D~V~~SFV----------~sa~Dv~~lr~~L~~~~~~~~~IiaK---IEt~~av~NL~eIl~~a~ 515 (631)
..+.+.++.|++ +||.|-+++- =+.+|+.++.++..++| ..|... |=..+-++.+.+.+...
T Consensus 10 ag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g---~kvyvt~n~i~~e~el~~~~~~l~~l- 85 (443)
T PRK15452 10 AGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALG---KKFYVVVNIAPHNAKLKTFIRDLEPV- 85 (443)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcC---CEEEEEecCcCCHHHHHHHHHHHHHH-
Confidence 367888899887 7999999432 13478888877777766 334443 33344555566555432
Q ss_pred cCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhc--CCCEEEEech----------hhhh-----hhCCCCChhhH
Q 006783 516 KSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAA--HVPVIWATQV----------LESL-----VKFGVPTRAEI 578 (631)
Q Consensus 516 ~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aa--gkPvi~ATQv----------LESM-----~~~~~PtRAEv 578 (631)
...++|||+|+ |+|+ +..+++. +.|+.+.||+ +..+ +-+.-=|..||
T Consensus 86 ~~~gvDgvIV~--d~G~--------------l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELsl~EI 149 (443)
T PRK15452 86 IAMKPDALIMS--DPGL--------------IMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEI 149 (443)
T ss_pred HhCCCCEEEEc--CHHH--------------HHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCCHHHH
Confidence 23378999995 3332 2334443 7899999987 3333 33334566777
Q ss_pred Hhhh-h---c------cccCccccc
Q 006783 579 TDVA-S---A------RRASCVMLN 593 (631)
Q Consensus 579 tDva-~---a------~gaD~vmLs 593 (631)
.++. + . .|+=|+|.|
T Consensus 150 ~~i~~~~~~~elEvfVHGalc~m~S 174 (443)
T PRK15452 150 EEIRQQCPDMELEVFVHGALCMAYS 174 (443)
T ss_pred HHHHhhCCCCCEEEEEEccchheee
Confidence 7765 2 1 378888876
No 85
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=79.66 E-value=42 Score=34.35 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=87.8
Q ss_pred hHHHHHh-cCCEEEEec------c--CChhHHHHHHHHHHHhCCCCceEEEe----------e------cChhhhcchHH
Q 006783 455 DLEFVAS-HADMVGISF------V--RDSCDIAMLRKELEKRKVQNLGVVLK----------I------ETKSGFERLPH 509 (631)
Q Consensus 455 dl~f~~~-~~D~V~~SF------V--~sa~Dv~~lr~~L~~~~~~~~~IiaK----------I------Et~~av~NL~e 509 (631)
.++.+.+ ++|+|-+.+ . -+..+++++++.+++.|. .|.+- + +..++++.+..
T Consensus 18 ~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl---~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 94 (275)
T PRK09856 18 AFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQM---PIIGYTPETNGYPYNMMLGDEHMRRESLDMIKL 94 (275)
T ss_pred HHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCC---eEEEecCcccCcCccccCCCHHHHHHHHHHHHH
Confidence 3556666 788888742 1 234578999999988773 33321 1 12345666666
Q ss_pred HHHHhhcCCCCcEEEEecCCccccc----ChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhh---hCCCCChhhHHhhh
Q 006783 510 ILLEAMKSSNPLGVMIARGDLAVEC----GWERLADMQEEILSICGAAHVPVIWATQVLESLV---KFGVPTRAEITDVA 582 (631)
Q Consensus 510 Il~~a~~~~~~DGImIaRGDL~vei----g~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~---~~~~PtRAEvtDva 582 (631)
.+..+ +.-|+..|.+..|..+..- -++++.+.-+++...|++.|+.+.+ |.|- .+-.+|.+++-++.
T Consensus 95 ~i~~a-~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i-----E~~~~~~~~~~~t~~~~~~l~ 168 (275)
T PRK09856 95 AMDMA-KEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLIL-----EPLTPYESNVVCNANDVLHAL 168 (275)
T ss_pred HHHHH-HHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE-----ecCCCCcccccCCHHHHHHHH
Confidence 66655 2336788888777544321 2357777788889999999986664 4432 24467888888888
Q ss_pred hccccCccccc--------CCccHHHHHHHH
Q 006783 583 SARRASCVMLN--------KGKHVVEAVSTL 605 (631)
Q Consensus 583 ~a~gaD~vmLs--------kG~ypveAV~~L 605 (631)
...+.+.+.+. .|.-|.+.++.+
T Consensus 169 ~~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~ 199 (275)
T PRK09856 169 ALVPSPRLFSMVDICAPYVQAEPVMSYFDKL 199 (275)
T ss_pred HHcCCCcceeEEeecchhcCCCCHHHHHHHh
Confidence 77654444332 454455555543
No 86
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=79.49 E-value=75 Score=32.24 Aligned_cols=152 Identities=14% Similarity=0.061 Sum_probs=85.8
Q ss_pred CCCChhcHHhH-HHHHh-cCCEEEEeccCCh------hHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcC
Q 006783 446 EGLTTKDLMDL-EFVAS-HADMVGISFVRDS------CDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKS 517 (631)
Q Consensus 446 p~LTekD~~dl-~f~~~-~~D~V~~SFV~sa------~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~ 517 (631)
..+|.+++..+ +...+ ++|+|-++|-.+. +|..++-+.+.+.+ .+..+.+-.=+ +.+.++....
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~-~~~~~~~l~~~--~~~~i~~a~~----- 85 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLV-PNVKLQALVRN--REKGIERALE----- 85 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhcc-CCcEEEEEccC--chhhHHHHHh-----
Confidence 34566666554 44444 7999999999887 67666666676654 24455454433 1222333322
Q ss_pred CCCcEEEEecCCcc---c----ccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhh---hcccc
Q 006783 518 SNPLGVMIARGDLA---V----ECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVA---SARRA 587 (631)
Q Consensus 518 ~~~DGImIaRGDL~---v----eig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva---~a~ga 587 (631)
.+.|.|.|.= +.+ . -.+.+....--.+.+..++++|+++.+.+... ..+.-+..++.+++ ...|+
T Consensus 86 ~g~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~----~~~~~~~~~l~~~~~~~~~~g~ 160 (265)
T cd03174 86 AGVDEVRIFD-SASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA----FGCKTDPEYVLEVAKALEEAGA 160 (265)
T ss_pred CCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee----cCCCCCHHHHHHHHHHHHHcCC
Confidence 2467777641 111 0 02334455566677889999999998866322 11113444444444 44799
Q ss_pred Cccccc--CC-ccHHHHHHHHHHHHH
Q 006783 588 SCVMLN--KG-KHVVEAVSTLDKILH 610 (631)
Q Consensus 588 D~vmLs--kG-~ypveAV~~L~~Il~ 610 (631)
|.+.|. .| -+|-+.-+.+..+.+
T Consensus 161 ~~i~l~Dt~G~~~P~~v~~li~~l~~ 186 (265)
T cd03174 161 DEISLKDTVGLATPEEVAELVKALRE 186 (265)
T ss_pred CEEEechhcCCcCHHHHHHHHHHHHH
Confidence 999996 44 455554444444443
No 87
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=77.40 E-value=9.5 Score=45.99 Aligned_cols=115 Identities=20% Similarity=0.250 Sum_probs=87.2
Q ss_pred cCCCCChhcHHhHHHHHh-----cCC---EEEEeccCChhHHHHHHHHHHHhCCC-----CceEEEeecChhhhcchHHH
Q 006783 444 HFEGLTTKDLMDLEFVAS-----HAD---MVGISFVRDSCDIAMLRKELEKRKVQ-----NLGVVLKIETKSGFERLPHI 510 (631)
Q Consensus 444 ~lp~LTekD~~dl~f~~~-----~~D---~V~~SFV~sa~Dv~~lr~~L~~~~~~-----~~~IiaKIEt~~av~NL~eI 510 (631)
.....|.+.++.++-+.+ +.| ...+|+.++++||-++.=+|++.|.- .+.|+.-.||.+.++|-+.|
T Consensus 459 ~~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~v 538 (910)
T COG2352 459 QPSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDV 538 (910)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHH
Confidence 345567777666655432 223 24679999999999999889888742 47899999999999999999
Q ss_pred HHHhhc----------CCCCcEEEEecCCcccccCh----hhHHHHHHHHHHHHHhcCCCEE
Q 006783 511 LLEAMK----------SSNPLGVMIARGDLAVECGW----ERLADMQEEILSICGAAHVPVI 558 (631)
Q Consensus 511 l~~a~~----------~~~~DGImIaRGDL~veig~----e~l~~~Qk~Ii~~c~aagkPvi 558 (631)
+..=+. +.+.--||||=.|=.=+-|+ -.+..+|+.++..|+++|+-.=
T Consensus 539 m~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lr 600 (910)
T COG2352 539 MTQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELR 600 (910)
T ss_pred HHHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEE
Confidence 865332 11245789988887777776 5899999999999999998763
No 88
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=76.67 E-value=75 Score=33.32 Aligned_cols=143 Identities=9% Similarity=0.066 Sum_probs=86.7
Q ss_pred CCChhcHHhHHHHHh--cCCEEEEeccCChhH----------HHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHh
Q 006783 447 GLTTKDLMDLEFVAS--HADMVGISFVRDSCD----------IAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEA 514 (631)
Q Consensus 447 ~LTekD~~dl~f~~~--~~D~V~~SFV~sa~D----------v~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a 514 (631)
.+|..++..|...+. ++|+|-++|..+.++ .+.++.+..... .+..+.+..-.... +++.|....
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~--~~~~l~~a~ 92 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGND--DIDLLEPAS 92 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCC--CHHHHHHHh
Confidence 357788888877664 799999999866432 455655554331 25667777665442 344444332
Q ss_pred hcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccc
Q 006783 515 MKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVM 591 (631)
Q Consensus 515 ~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vm 591 (631)
..++|.|.|+ ++...+. ..++++..++++|..|.+.- .....-+..++.+.+.. .|+|.+.
T Consensus 93 --~~gv~~iri~-------~~~~~~~-~~~~~i~~ak~~G~~v~~~~------~~a~~~~~~~~~~~~~~~~~~g~~~i~ 156 (266)
T cd07944 93 --GSVVDMIRVA-------FHKHEFD-EALPLIKAIKEKGYEVFFNL------MAISGYSDEELLELLELVNEIKPDVFY 156 (266)
T ss_pred --cCCcCEEEEe-------cccccHH-HHHHHHHHHHHCCCeEEEEE------EeecCCCHHHHHHHHHHHHhCCCCEEE
Confidence 3367888775 2333333 34667888899998877632 12233456666665543 6999999
Q ss_pred cc--CCc-cHHHHHHHHHHH
Q 006783 592 LN--KGK-HVVEAVSTLDKI 608 (631)
Q Consensus 592 Ls--kG~-ypveAV~~L~~I 608 (631)
|. .|- +|.+.-+....+
T Consensus 157 l~DT~G~~~P~~v~~lv~~l 176 (266)
T cd07944 157 IVDSFGSMYPEDIKRIISLL 176 (266)
T ss_pred EecCCCCCCHHHHHHHHHHH
Confidence 97 554 455544444444
No 89
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=76.64 E-value=41 Score=33.79 Aligned_cols=119 Identities=16% Similarity=0.094 Sum_probs=64.9
Q ss_pred cHHhHHHHHh-cCCEEEEec--cCCh--hHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEe
Q 006783 452 DLMDLEFVAS-HADMVGISF--VRDS--CDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIA 526 (631)
Q Consensus 452 D~~dl~f~~~-~~D~V~~SF--V~sa--~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIa 526 (631)
+.+.++.+.+ ++|+|.+.. +.++ +.+.++.+.+++. ..+.+++..- +.+++.... ..|+|.|.+.
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~--~~i~vi~~v~------t~ee~~~a~--~~G~d~i~~~ 146 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY--PGQLLMADCS------TLEEGLAAQ--KLGFDFIGTT 146 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC--CCCeEEEeCC------CHHHHHHHH--HcCCCEEEcC
Confidence 3445666666 799887643 2233 6666776666652 2466766543 444443322 3378988875
Q ss_pred cCCccccc--ChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 527 RGDLAVEC--GWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 527 RGDL~vei--g~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
.+++...- ........-+++ ....++||+.+. ++-|..++..+. ..|+|+|++.
T Consensus 147 ~~g~t~~~~~~~~~~~~~i~~i---~~~~~iPvia~G---------GI~t~~~~~~~l-~~GadgV~iG 202 (221)
T PRK01130 147 LSGYTEETKKPEEPDFALLKEL---LKAVGCPVIAEG---------RINTPEQAKKAL-ELGAHAVVVG 202 (221)
T ss_pred CceeecCCCCCCCcCHHHHHHH---HHhCCCCEEEEC---------CCCCHHHHHHHH-HCCCCEEEEc
Confidence 44332211 011111222222 233489999743 566666655433 3789999987
No 90
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=76.25 E-value=93 Score=32.98 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=72.0
Q ss_pred CCCChhcHHhHH--H------HHh-cCCEEEEecc-------------CChhH------------HHHHHHHHHHhCCCC
Q 006783 446 EGLTTKDLMDLE--F------VAS-HADMVGISFV-------------RDSCD------------IAMLRKELEKRKVQN 491 (631)
Q Consensus 446 p~LTekD~~dl~--f------~~~-~~D~V~~SFV-------------~sa~D------------v~~lr~~L~~~~~~~ 491 (631)
..||..|++.+. | +.+ ++|.|-+-.. +...| +.++-+.+++.-+.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 569999998773 2 223 6898877443 22122 122222222221256
Q ss_pred ceEEEeecChhhh------cchHHHHHHhhcCCCCcEEEEecCCcccccCh-----hhHHHHHHHHHHHHHhcCCCEEEE
Q 006783 492 LGVVLKIETKSGF------ERLPHILLEAMKSSNPLGVMIARGDLAVECGW-----ERLADMQEEILSICGAAHVPVIWA 560 (631)
Q Consensus 492 ~~IiaKIEt~~av------~NL~eIl~~a~~~~~~DGImIaRGDL~veig~-----e~l~~~Qk~Ii~~c~aagkPvi~A 560 (631)
..|..||.-.+.. +...+++... ...|+|.|-|..|+..-.... ..-..-.+.+-...+..++||+..
T Consensus 209 ~~i~vris~~~~~~~g~~~~e~~~la~~l-~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~ 287 (327)
T cd02803 209 FPVGVRLSADDFVPGGLTLEEAIEIAKAL-EEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAV 287 (327)
T ss_pred ceEEEEechhccCCCCCCHHHHHHHHHHH-HHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEe
Confidence 7899998743211 1112222211 223689998887764321110 000111122222334458999875
Q ss_pred echhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 561 TQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 561 TQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
. ++=|..++.++....++|.|++.
T Consensus 288 G---------gi~t~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 288 G---------GIRDPEVAEEILAEGKADLVALG 311 (327)
T ss_pred C---------CCCCHHHHHHHHHCCCCCeeeec
Confidence 4 34466666666666689999997
No 91
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=76.21 E-value=6.5 Score=44.90 Aligned_cols=96 Identities=16% Similarity=0.156 Sum_probs=67.8
Q ss_pred CCEEEEeccCChhHHHHHHHHHHHh--------------------CCCCceEEEeecChhhhcchHHHHHHhhcCCC---
Q 006783 463 ADMVGISFVRDSCDIAMLRKELEKR--------------------KVQNLGVVLKIETKSGFERLPHILLEAMKSSN--- 519 (631)
Q Consensus 463 ~D~V~~SFV~sa~Dv~~lr~~L~~~--------------------~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~--- 519 (631)
+-.|.++|.+|++++..+.+++.+. ..+.+.||.-||+..++=|.++|+..=+++.|
T Consensus 121 IfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~~~ 200 (491)
T PF14010_consen 121 IFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGRDP 200 (491)
T ss_dssp -SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT---
T ss_pred hheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcCCc
Confidence 6789999999999999988776521 12578999999999999999999987655441
Q ss_pred -CcEEEEecCCcccccChhhHHH----HHHHHHHHHHhcCCCEE
Q 006783 520 -PLGVMIARGDLAVECGWERLAD----MQEEILSICGAAHVPVI 558 (631)
Q Consensus 520 -~DGImIaRGDL~veig~e~l~~----~Qk~Ii~~c~aagkPvi 558 (631)
---||+||.|=|+..|+=.-.. +-.++-..-+..|+|+.
T Consensus 201 ~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~Iy 244 (491)
T PF14010_consen 201 EYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIY 244 (491)
T ss_dssp SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEE
T ss_pred hheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 1358999999999999843322 33444455578899984
No 92
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=75.89 E-value=85 Score=30.93 Aligned_cols=133 Identities=17% Similarity=0.114 Sum_probs=71.3
Q ss_pred hHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccc
Q 006783 455 DLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVE 533 (631)
Q Consensus 455 dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve 533 (631)
.++-+.+ ++|+|.+.+......+.++.++.+++| +.+++-+-++.- ..+++.... ..++|.|.+.+|-=+-.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g---~~~~~~~~~~~t--~~~~~~~~~--~~g~d~v~~~pg~~~~~ 140 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHG---KEVQVDLINVKD--KVKRAKELK--ELGADYIGVHTGLDEQA 140 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC---CEEEEEecCCCC--hHHHHHHHH--HcCCCEEEEcCCcCccc
Confidence 3455555 899999988876667788888887765 455544322211 122222111 11579888876522212
Q ss_pred cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHHHHHHH
Q 006783 534 CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVSTLDKI 608 (631)
Q Consensus 534 ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~~L~~I 608 (631)
.+...+ +.+-+..+....+.|+++ |--+...+.++. ..|+|++.+. .-+-|.++++.|.++
T Consensus 141 ~~~~~~----~~i~~l~~~~~~~~i~v~---------GGI~~~n~~~~~-~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 141 KGQNPF----EDLQTILKLVKEARVAVA---------GGINLDTIPDVI-KLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred CCCCCH----HHHHHHHHhcCCCcEEEE---------CCcCHHHHHHHH-HcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 221111 122222232333445433 233555555554 4699988885 335588888877665
No 93
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=75.85 E-value=14 Score=35.33 Aligned_cols=144 Identities=23% Similarity=0.204 Sum_probs=89.2
Q ss_pred HHHHh-cCCEEEEeccCCh------hHHHHHHHHHHHhCCCCceEEEeec--------------ChhhhcchHHHHHHhh
Q 006783 457 EFVAS-HADMVGISFVRDS------CDIAMLRKELEKRKVQNLGVVLKIE--------------TKSGFERLPHILLEAM 515 (631)
Q Consensus 457 ~f~~~-~~D~V~~SFV~sa------~Dv~~lr~~L~~~~~~~~~IiaKIE--------------t~~av~NL~eIl~~a~ 515 (631)
+++.+ ++|.|-+++.... .++.++++.+++.|..=..+..... ...+++.+.+.+..+
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a- 80 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLA- 80 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHH-
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHH-
Confidence 44555 6788888776442 3578899999887732111111111 133467777777665
Q ss_pred cCCCCcEEEEecC------CcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCCh---hhHHhhhhccc
Q 006783 516 KSSNPLGVMIARG------DLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTR---AEITDVASARR 586 (631)
Q Consensus 516 ~~~~~DGImIaRG------DL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtR---AEvtDva~a~g 586 (631)
+.-|+..+.+..| ....+-.++++.+.-+++...|++.|+-+. ||.+......+. .++.++....+
T Consensus 81 ~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~-----lE~~~~~~~~~~~~~~~~~~~l~~~~ 155 (213)
T PF01261_consen 81 KRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIA-----LENHPGPFSETPFSVEEIYRLLEEVD 155 (213)
T ss_dssp HHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEE-----EE-SSSSSSSEESSHHHHHHHHHHHT
T ss_pred HHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEE-----EecccCccccchhhHHHHHHHHhhcC
Confidence 2336788999877 233333456888888899999999996655 466666666566 77777777777
Q ss_pred cCccccc--------CCccHHHHHHHHH
Q 006783 587 ASCVMLN--------KGKHVVEAVSTLD 606 (631)
Q Consensus 587 aD~vmLs--------kG~ypveAV~~L~ 606 (631)
-+.+-+. .|..+.+.++.+.
T Consensus 156 ~~~~~i~~D~~h~~~~~~~~~~~i~~~~ 183 (213)
T PF01261_consen 156 SPNVGICFDTGHLIMAGEDPDEAIKRLA 183 (213)
T ss_dssp TTTEEEEEEHHHHHHTTHHHHHHHHHHH
T ss_pred CCcceEEEehHHHHHcCCCHHHHHHHhh
Confidence 6655444 3455555555443
No 94
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=74.65 E-value=47 Score=33.41 Aligned_cols=130 Identities=19% Similarity=0.187 Sum_probs=68.4
Q ss_pred hcHHhHHHHHh-cCCEEEEec--cCChhHHHHHHHHHHHhCCCCceEEEe-----ecCh--h--hhcchHHHHHHhhcCC
Q 006783 451 KDLMDLEFVAS-HADMVGISF--VRDSCDIAMLRKELEKRKVQNLGVVLK-----IETK--S--GFERLPHILLEAMKSS 518 (631)
Q Consensus 451 kD~~dl~f~~~-~~D~V~~SF--V~sa~Dv~~lr~~L~~~~~~~~~IiaK-----IEt~--~--av~NL~eIl~~a~~~~ 518 (631)
++.++++.+.+ ++|.|.++- .++++. +.++.++.+.+.+.+-.. +++. . .-.+..+++... ...
T Consensus 82 ~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~---~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~-~~~ 157 (230)
T TIGR00007 82 RSLEDVEKLLDLGVDRVIIGTAAVENPDL---VKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRL-EEL 157 (230)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhCHHH---HHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHH-HhC
Confidence 56677787776 799887752 344444 444455444233322111 2111 0 012333333322 123
Q ss_pred CCcEEEEe-cCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----
Q 006783 519 NPLGVMIA-RGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN---- 593 (631)
Q Consensus 519 ~~DGImIa-RGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs---- 593 (631)
|++++++. +.-=+..-|. . .+.+-..++....|++.+. ++-+.+++..+.. .|+|+||++
T Consensus 158 g~~~ii~~~~~~~g~~~g~-~----~~~i~~i~~~~~ipvia~G---------Gi~~~~di~~~~~-~Gadgv~ig~a~~ 222 (230)
T TIGR00007 158 GLEGIIYTDISRDGTLSGP-N----FELTKELVKAVNVPVIASG---------GVSSIDDLIALKK-LGVYGVIVGKALY 222 (230)
T ss_pred CCCEEEEEeecCCCCcCCC-C----HHHHHHHHHhCCCCEEEeC---------CCCCHHHHHHHHH-CCCCEEEEeHHHH
Confidence 67988863 2111222232 1 1222333455789999854 6778777776553 799999997
Q ss_pred CCccHH
Q 006783 594 KGKHVV 599 (631)
Q Consensus 594 kG~ypv 599 (631)
.|.++.
T Consensus 223 ~~~~~~ 228 (230)
T TIGR00007 223 EGKITL 228 (230)
T ss_pred cCCCCC
Confidence 566553
No 95
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=74.07 E-value=92 Score=32.10 Aligned_cols=113 Identities=11% Similarity=0.017 Sum_probs=69.1
Q ss_pred HHHHHh-cCCEEEEec--cCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEE---ecCC
Q 006783 456 LEFVAS-HADMVGISF--VRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMI---ARGD 529 (631)
Q Consensus 456 l~f~~~-~~D~V~~SF--V~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImI---aRGD 529 (631)
++.+.+ ++|.|.+.. ++..++...+.+.+++.|. +..+...=+|+ ++.+..++..+ |++++ -+|.
T Consensus 94 i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl-~~~~~v~p~T~--~e~l~~~~~~~------~~~l~msv~~~~ 164 (244)
T PRK13125 94 LNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGL-KPVFFTSPKFP--DLLIHRLSKLS------PLFIYYGLRPAT 164 (244)
T ss_pred HHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCC-CEEEEECCCCC--HHHHHHHHHhC------CCEEEEEeCCCC
Confidence 454555 799999974 4666888888888988874 45566666663 56778888765 78874 3334
Q ss_pred cccccChhhHHHHHHHHHHHHHhc--CCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 530 LAVECGWERLADMQEEILSICGAA--HVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 530 L~veig~e~l~~~Qk~Ii~~c~aa--gkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
.+ ++..-..+.++..++. .+|+++ ..|+=|...+..+. ..|||++...
T Consensus 165 g~------~~~~~~~~~i~~lr~~~~~~~i~v---------~gGI~~~e~i~~~~-~~gaD~vvvG 214 (244)
T PRK13125 165 GV------PLPVSVERNIKRVRNLVGNKYLVV---------GFGLDSPEDARDAL-SAGADGVVVG 214 (244)
T ss_pred CC------CchHHHHHHHHHHHHhcCCCCEEE---------eCCcCCHHHHHHHH-HcCCCEEEEC
Confidence 22 2333333344444443 467665 44665655533322 3688888764
No 96
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=73.96 E-value=59 Score=33.50 Aligned_cols=130 Identities=15% Similarity=0.076 Sum_probs=82.3
Q ss_pred hHHHHHh-cCCEEEEeccC----------ChhHHHHHHHHHHHhCCCCceEEEe-------e--------cChhhhcchH
Q 006783 455 DLEFVAS-HADMVGISFVR----------DSCDIAMLRKELEKRKVQNLGVVLK-------I--------ETKSGFERLP 508 (631)
Q Consensus 455 dl~f~~~-~~D~V~~SFV~----------sa~Dv~~lr~~L~~~~~~~~~IiaK-------I--------Et~~av~NL~ 508 (631)
.++.+.+ ++|.|-+++-. +++++..+++.+++.|. .|.+- + ...++++.+.
T Consensus 26 ~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl---~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 102 (283)
T PRK13209 26 KLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGF---RVNSMCLSAHRRFPLGSEDDAVRAQALEIMR 102 (283)
T ss_pred HHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCC---ceeEEecccccccCCCCCCHHHHHHHHHHHH
Confidence 4566666 79999997532 67889999999998773 33221 1 0134566676
Q ss_pred HHHHHhhcCCCCcEEEEecCCcccccC----hhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc
Q 006783 509 HILLEAMKSSNPLGVMIARGDLAVECG----WERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA 584 (631)
Q Consensus 509 eIl~~a~~~~~~DGImIaRGDL~veig----~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a 584 (631)
..+..+ +.-|+.-|.++-++...+.. ++++.+.-+++...++++|+.+.+ |.+-....+|-.+.-++...
T Consensus 103 ~~i~~a-~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~i-----E~~~~~~~~~~~~~~~ll~~ 176 (283)
T PRK13209 103 KAIQLA-QDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAF-----EIMDTPFMNSISKALGYAHY 176 (283)
T ss_pred HHHHHH-HHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE-----eecCCcccCCHHHHHHHHHH
Confidence 666655 23366777776443322222 345566678888999999987775 55555666777777777766
Q ss_pred cccCccccc
Q 006783 585 RRASCVMLN 593 (631)
Q Consensus 585 ~gaD~vmLs 593 (631)
.+.+.+-++
T Consensus 177 v~~~~lgl~ 185 (283)
T PRK13209 177 LNSPWFQLY 185 (283)
T ss_pred hCCCccceE
Confidence 665655544
No 97
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=73.51 E-value=80 Score=34.11 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=19.7
Q ss_pred CCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 554 HVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 554 gkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
.+|+|.+. |+=+. .|++.+ .|||+|++.
T Consensus 255 ~ipIiasG---------GIr~~---~dv~kal~lGAd~V~i~ 284 (326)
T cd02811 255 DLPLIASG---------GIRNG---LDIAKALALGADLVGMA 284 (326)
T ss_pred CCcEEEEC---------CCCCH---HHHHHHHHhCCCEEEEc
Confidence 68988755 44444 456555 599999997
No 98
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=73.00 E-value=56 Score=32.83 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=63.6
Q ss_pred cHHhHHHHHh-cCCEEEEe--ccCChh--HHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEe
Q 006783 452 DLMDLEFVAS-HADMVGIS--FVRDSC--DIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIA 526 (631)
Q Consensus 452 D~~dl~f~~~-~~D~V~~S--FV~sa~--Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIa 526 (631)
+.+.++.+.+ ++|+|.+- ....++ .+.++.+.+++.+ ++.+++.+.|.+-. .... ..|+|.|.+.
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g--~~~iiv~v~t~~ea------~~a~--~~G~d~i~~~ 150 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY--NCLLMADISTLEEA------LNAA--KLGFDIIGTT 150 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh--CCeEEEECCCHHHH------HHHH--HcCCCEEEcc
Confidence 4456777776 79988763 333343 6666666676665 57778877665432 2221 2367988764
Q ss_pred cCCccc---ccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 527 RGDLAV---ECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 527 RGDL~v---eig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
..+..- ......+ + .+-...+..++|++.+- ++=+..++..+.. .|+|+|++.
T Consensus 151 ~~g~t~~~~~~~~~~~-~---~l~~i~~~~~ipvia~G---------GI~~~~~~~~~l~-~GadgV~vG 206 (219)
T cd04729 151 LSGYTEETAKTEDPDF-E---LLKELRKALGIPVIAEG---------RINSPEQAAKALE-LGADAVVVG 206 (219)
T ss_pred CccccccccCCCCCCH-H---HHHHHHHhcCCCEEEeC---------CCCCHHHHHHHHH-CCCCEEEEc
Confidence 222211 1111111 1 22222233479999743 4545444433333 689999986
No 99
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=72.95 E-value=14 Score=39.01 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=71.1
Q ss_pred cccCCCCCh-hcHHhHHHHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEee---cChhhhcchHH-HHHHhhc
Q 006783 442 NIHFEGLTT-KDLMDLEFVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKI---ETKSGFERLPH-ILLEAMK 516 (631)
Q Consensus 442 ~l~lp~LTe-kD~~dl~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKI---Et~~av~NL~e-Il~~a~~ 516 (631)
.+.+|.+|| .|..+++.+.+.+|++-++- ++......++. +.+ .+-.|..|= -|++-.-+.-| |.+..
T Consensus 71 ~~glpvvTeV~~~~~~~~vae~vDilQIgA-rn~rn~~LL~a-~g~---t~kpV~lKrG~~~t~~e~l~aaeyi~~~G-- 143 (258)
T TIGR01362 71 EFGVPILTDVHESSQCEPVAEVVDIIQIPA-FLCRQTDLLVA-AAK---TGRIVNVKKGQFLSPWDMKNVVEKVLSTG-- 143 (258)
T ss_pred HhCCceEEEeCCHHHHHHHHhhCcEEEeCc-hhcchHHHHHH-Hhc---cCCeEEecCCCcCCHHHHHHHHHHHHHcC--
Confidence 345666666 46777888888899999984 33333333332 332 223444441 23333333333 33332
Q ss_pred CCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChh-------------------h
Q 006783 517 SSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRA-------------------E 577 (631)
Q Consensus 517 ~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRA-------------------E 577 (631)
+..-|+.=||= ..|+-++..=..-+. ..++.|.|||+ .||-+ .
T Consensus 144 --n~~viLcERG~---tf~y~r~~~D~~~ip-~~k~~~~PVi~------------DpSHsvq~pg~~g~~s~G~r~~v~~ 205 (258)
T TIGR01362 144 --NKNILLCERGT---SFGYNNLVVDMRSLP-IMRELGCPVIF------------DATHSVQQPGGLGGASGGLREFVPT 205 (258)
T ss_pred --CCcEEEEeCCC---CcCCCCcccchhhhH-HHHhcCCCEEE------------eCCccccCCCCCCCCCCCcHHHHHH
Confidence 34566667884 335543211111111 11334899997 44443 2
Q ss_pred HHhhhhccccCcccccCCccHHHH
Q 006783 578 ITDVASARRASCVMLNKGKHVVEA 601 (631)
Q Consensus 578 vtDva~a~gaD~vmLskG~ypveA 601 (631)
+.-+|.|.|+|++|+=.=|.|-+|
T Consensus 206 la~AAvA~GaDGl~iEvHpdP~~A 229 (258)
T TIGR01362 206 LARAAVAVGIDGLFMETHPDPKNA 229 (258)
T ss_pred HHHHHHHhCCCEEEEEeCCCcccc
Confidence 333556689999999644444443
No 100
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=72.90 E-value=98 Score=30.28 Aligned_cols=129 Identities=14% Similarity=0.138 Sum_probs=68.3
Q ss_pred hHHHHHh-cCCEEEEe-----ccCChh-HHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEec
Q 006783 455 DLEFVAS-HADMVGIS-----FVRDSC-DIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIAR 527 (631)
Q Consensus 455 dl~f~~~-~~D~V~~S-----FV~sa~-Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaR 527 (631)
+++.+.+ ++|+|.+- |+++.. ....++++- +.....+.+..|..... +-++.+. .+ |.|||.+-
T Consensus 16 ~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~-~~~~~~v~v~lm~~~~~--~~~~~~~-~~----gadgv~vh- 86 (210)
T TIGR01163 16 EVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALR-KYTDLPIDVHLMVENPD--RYIEDFA-EA----GADIITVH- 86 (210)
T ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHH-hcCCCcEEEEeeeCCHH--HHHHHHH-Hc----CCCEEEEc-
Confidence 4455556 69999995 875533 333444332 22212232446776543 2233333 33 78998883
Q ss_pred CCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc-------CCccHHH
Q 006783 528 GDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN-------KGKHVVE 600 (631)
Q Consensus 528 GDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs-------kG~ypve 600 (631)
+ +.. ....+.+..+++.|+.+++... + -|..|.-. ..+.++|.+++. +.+++..
T Consensus 87 ~------~~~---~~~~~~~~~~~~~g~~~~~~~~--------~-~t~~e~~~-~~~~~~d~i~~~~~~~g~tg~~~~~~ 147 (210)
T TIGR01163 87 P------EAS---EHIHRLLQLIKDLGAKAGIVLN--------P-ATPLEFLE-YVLPDVDLVLLMSVNPGFGGQKFIPD 147 (210)
T ss_pred c------CCc---hhHHHHHHHHHHcCCcEEEEEC--------C-CCCHHHHH-HHHhhCCEEEEEEEcCCCCcccccHH
Confidence 1 111 1225666888999988887531 1 12233111 122467877662 3456667
Q ss_pred HHHHHHHHHHH
Q 006783 601 AVSTLDKILHI 611 (631)
Q Consensus 601 AV~~L~~Il~r 611 (631)
.++.+..+.+.
T Consensus 148 ~~~~i~~i~~~ 158 (210)
T TIGR01163 148 TLEKIREVRKM 158 (210)
T ss_pred HHHHHHHHHHH
Confidence 77766665443
No 101
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=72.84 E-value=69 Score=32.93 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=72.1
Q ss_pred hcHHhHHHHHh-cCCEEEEec--cCChhHHHHHHHHHHHhCCCCceE-------EEeecCh-hhhcchHHHHHHhhcCCC
Q 006783 451 KDLMDLEFVAS-HADMVGISF--VRDSCDIAMLRKELEKRKVQNLGV-------VLKIETK-SGFERLPHILLEAMKSSN 519 (631)
Q Consensus 451 kD~~dl~f~~~-~~D~V~~SF--V~sa~Dv~~lr~~L~~~~~~~~~I-------iaKIEt~-~av~NL~eIl~~a~~~~~ 519 (631)
++.++++..+. ++|.+.++- +++++-+.++-+.. + +++.+ ..|+.-. +.-.++.+++... ...|
T Consensus 85 rs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~---~-~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l-~~~G 159 (241)
T PRK14024 85 RDDESLEAALATGCARVNIGTAALENPEWCARVIAEH---G-DRVAVGLDVRGHTLAARGWTRDGGDLWEVLERL-DSAG 159 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHh---h-hhEEEEEEEeccEeccCCeeecCccHHHHHHHH-HhcC
Confidence 45677777776 788877654 46666666554443 2 22211 1111000 0112233333321 2236
Q ss_pred CcEEEEe-cCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc---
Q 006783 520 PLGVMIA-RGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN--- 593 (631)
Q Consensus 520 ~DGImIa-RGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs--- 593 (631)
++.+++- |.==+..-|+ .+ +.+-..++...+|||.+. +.-|..++..+... .|+|+||+.
T Consensus 160 ~~~iiv~~~~~~g~~~G~-d~----~~i~~i~~~~~ipviasG---------Gi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 160 CSRYVVTDVTKDGTLTGP-NL----ELLREVCARTDAPVVASG---------GVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred CCEEEEEeecCCCCccCC-CH----HHHHHHHhhCCCCEEEeC---------CCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 7888873 2222222343 32 222334456789999865 56676666666543 599999998
Q ss_pred -CCccHHHHH
Q 006783 594 -KGKHVVEAV 602 (631)
Q Consensus 594 -kG~ypveAV 602 (631)
.|+++++..
T Consensus 226 ~~g~~~~~~~ 235 (241)
T PRK14024 226 YAGAFTLPEA 235 (241)
T ss_pred HcCCCCHHHH
Confidence 788887754
No 102
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=72.75 E-value=86 Score=31.28 Aligned_cols=130 Identities=13% Similarity=0.090 Sum_probs=71.2
Q ss_pred HHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcc----hHHHHHHhhcCCCCcEEEEecCCcc
Q 006783 457 EFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFER----LPHILLEAMKSSNPLGVMIARGDLA 531 (631)
Q Consensus 457 ~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~N----L~eIl~~a~~~~~~DGImIaRGDL~ 531 (631)
+.+.+ ++|+|.+.+.-..+.+..+.+.+++.| ..++++++-+++.+++. ++.++..+ ..+|.+|..+.+.
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~~v~~m~-~e~G~~g~~~~~~--- 148 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESG-GKVFVVVEMSHPGALEFIQPHADKLAKLA-QEAGAFGVVAPAT--- 148 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcC-CeEEEEEeCCCCCCCCCHHHHHHHHHHHH-HHhCCCeEEECCC---
Confidence 43444 799999999866666888878787766 45666777777666664 44443322 1235566654321
Q ss_pred cccChhhHHHHHHHHHHHHHhcCCC-EEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHHHHH
Q 006783 532 VECGWERLADMQEEILSICGAAHVP-VIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVSTLD 606 (631)
Q Consensus 532 veig~e~l~~~Qk~Ii~~c~aagkP-vi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~~L~ 606 (631)
.++++.++.+ ..+.+ .|+.- -+ .+...-+.++. ..|+|.+.+. ..+-|.++++.|.
T Consensus 149 ---~~~~i~~l~~-------~~~~~~~ivdg-GI-------~~~g~~~~~~~-~aGad~iV~Gr~I~~~~d~~~~~~~l~ 209 (215)
T PRK13813 149 ---RPERVRYIRS-------RLGDELKIISP-GI-------GAQGGKAADAI-KAGADYVIVGRSIYNAADPREAAKAIN 209 (215)
T ss_pred ---cchhHHHHHH-------hcCCCcEEEeC-Cc-------CCCCCCHHHHH-HcCCCEEEECcccCCCCCHHHHHHHHH
Confidence 1233322222 22223 22211 11 11110133333 3689988876 3456899988887
Q ss_pred HHHH
Q 006783 607 KILH 610 (631)
Q Consensus 607 ~Il~ 610 (631)
+.++
T Consensus 210 ~~~~ 213 (215)
T PRK13813 210 EEIR 213 (215)
T ss_pred HHHh
Confidence 7654
No 103
>PRK07695 transcriptional regulator TenI; Provisional
Probab=72.63 E-value=58 Score=32.23 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=68.2
Q ss_pred HHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccc--
Q 006783 457 EFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVE-- 533 (631)
Q Consensus 457 ~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve-- 533 (631)
+.+.. ++|.|-++.- ...+..+++.+ .+..|-+.+.| ++++.... ..|.|.|++++-.-+..
T Consensus 67 ~la~~~~~~gvHl~~~--~~~~~~~r~~~-----~~~~ig~s~~s------~e~a~~a~--~~Gadyi~~g~v~~t~~k~ 131 (201)
T PRK07695 67 DIALLLNIHRVQLGYR--SFSVRSVREKF-----PYLHVGYSVHS------LEEAIQAE--KNGADYVVYGHVFPTDCKK 131 (201)
T ss_pred HHHHHcCCCEEEeCcc--cCCHHHHHHhC-----CCCEEEEeCCC------HHHHHHHH--HcCCCEEEECCCCCCCCCC
Confidence 34444 5777777752 12234444432 23344444444 33332221 22679998876433211
Q ss_pred ----cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHHHH
Q 006783 534 ----CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVSTL 605 (631)
Q Consensus 534 ----ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~~L 605 (631)
.|++. +-+.+...++||+.+. |+ +...+.++.. .|+|+|++. ....|.++++.+
T Consensus 132 ~~~~~g~~~-------l~~~~~~~~ipvia~G---------GI-~~~~~~~~~~-~Ga~gvav~s~i~~~~~p~~~~~~~ 193 (201)
T PRK07695 132 GVPARGLEE-------LSDIARALSIPVIAIG---------GI-TPENTRDVLA-AGVSGIAVMSGIFSSANPYSKAKRY 193 (201)
T ss_pred CCCCCCHHH-------HHHHHHhCCCCEEEEc---------CC-CHHHHHHHHH-cCCCEEEEEHHHhcCCCHHHHHHHH
Confidence 12222 2233445589999754 45 5555665553 799999876 557799999988
Q ss_pred HHHHHH
Q 006783 606 DKILHI 611 (631)
Q Consensus 606 ~~Il~r 611 (631)
.+++++
T Consensus 194 ~~~~~~ 199 (201)
T PRK07695 194 AESIKK 199 (201)
T ss_pred HHHHhh
Confidence 887653
No 104
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=72.61 E-value=1.3e+02 Score=32.36 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=79.4
Q ss_pred hhcHHhHHHHHh--cCCEEEEecc--CChhHH------HHHHHHHHHhC-CCCceEEEeecChhhhcchHHHHHHhhcCC
Q 006783 450 TKDLMDLEFVAS--HADMVGISFV--RDSCDI------AMLRKELEKRK-VQNLGVVLKIETKSGFERLPHILLEAMKSS 518 (631)
Q Consensus 450 ekD~~dl~f~~~--~~D~V~~SFV--~sa~Dv------~~lr~~L~~~~-~~~~~IiaKIEt~~av~NL~eIl~~a~~~~ 518 (631)
.++..++...++ ++|+|-+.+- ....+. +.+.+.++... .-++.|++||- + .+.++.+++..+ ...
T Consensus 111 ~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~-p-~~~~~~~~a~~l-~~~ 187 (325)
T cd04739 111 AGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLS-P-FFSALAHMAKQL-DAA 187 (325)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcC-C-CccCHHHHHHHH-HHc
Confidence 445555544333 5899887652 221111 12333333221 13588999984 3 255677776654 334
Q ss_pred CCcEEEE-ecC-Cccccc------------ChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc
Q 006783 519 NPLGVMI-ARG-DLAVEC------------GWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA 584 (631)
Q Consensus 519 ~~DGImI-aRG-DL~vei------------g~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a 584 (631)
|+|||.+ .|. ...+.+ |....+...+.+-..+.+..+|+|-.. ++-|..++-....
T Consensus 188 Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~G---------GI~s~~Da~e~l~- 257 (325)
T cd04739 188 GADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASG---------GVHDAEDVVKYLL- 257 (325)
T ss_pred CCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEEC---------CCCCHHHHHHHHH-
Confidence 8999987 332 011110 112233444445455556689988644 5556555444433
Q ss_pred cccCccccc-----CCccHHHHHHHHHHHHHHHhhc
Q 006783 585 RRASCVMLN-----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 585 ~gaD~vmLs-----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
.|||+||+. .|+..+ -++.+.+...|++|
T Consensus 258 aGA~~Vqv~ta~~~~gp~~~--~~i~~~L~~~l~~~ 291 (325)
T cd04739 258 AGADVVMTTSALLRHGPDYI--GTLLAGLEAWMEEH 291 (325)
T ss_pred cCCCeeEEehhhhhcCchHH--HHHHHHHHHHHHHc
Confidence 799999998 465432 23344444456655
No 105
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=71.32 E-value=59 Score=33.48 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=43.9
Q ss_pred CCcEEEEecCC-cccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----
Q 006783 519 NPLGVMIARGD-LAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN---- 593 (631)
Q Consensus 519 ~~DGImIaRGD-L~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs---- 593 (631)
|+++|++--=+ =+..-|+. .+.+-..++..++|||.+. +.-|..++..+....|+|++|..
T Consensus 166 g~~~ii~~~i~~~g~~~g~d-----~~~i~~~~~~~~ipvia~G---------Gv~s~~d~~~~~~~~G~~gvivg~al~ 231 (253)
T PRK02083 166 GAGEILLTSMDRDGTKNGYD-----LELTRAVSDAVNVPVIASG---------GAGNLEHFVEAFTEGGADAALAASIFH 231 (253)
T ss_pred CCCEEEEcCCcCCCCCCCcC-----HHHHHHHHhhCCCCEEEEC---------CCCCHHHHHHHHHhCCccEEeEhHHHH
Confidence 67888763111 12223331 2233344566789999866 56676676666666799999997
Q ss_pred CCccHHHHH
Q 006783 594 KGKHVVEAV 602 (631)
Q Consensus 594 kG~ypveAV 602 (631)
.|.++.+.+
T Consensus 232 ~~~~~~~~~ 240 (253)
T PRK02083 232 FGEITIGEL 240 (253)
T ss_pred cCCCCHHHH
Confidence 688877653
No 106
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=71.13 E-value=18 Score=38.66 Aligned_cols=148 Identities=17% Similarity=0.159 Sum_probs=74.8
Q ss_pred cccCCCCCh-hcHHhHHHHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEee---cChhhhcchHHHHHHhhcC
Q 006783 442 NIHFEGLTT-KDLMDLEFVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKI---ETKSGFERLPHILLEAMKS 517 (631)
Q Consensus 442 ~l~lp~LTe-kD~~dl~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKI---Et~~av~NL~eIl~~a~~~ 517 (631)
.+.+|.+|| .|.++++.+.+.+|++-++- ++......|+. +.+ .+-.|..|= -+++-.-|.-|=+... +
T Consensus 85 ~~GlpvvTeV~~~~~~~~~ae~vDilQIgA-r~~rntdLL~a-~~~---t~kpV~lKrGqf~s~~e~~~aae~i~~~-G- 157 (281)
T PRK12457 85 RFGVPVITDVHEVEQAAPVAEVADVLQVPA-FLARQTDLVVA-IAK---TGKPVNIKKPQFMSPTQMKHVVSKCREA-G- 157 (281)
T ss_pred HHCCceEEEeCCHHHHHHHhhhCeEEeeCc-hhhchHHHHHH-Hhc---cCCeEEecCCCcCCHHHHHHHHHHHHHc-C-
Confidence 456677776 46677888888999999984 23333333322 222 223444441 2333333333333222 1
Q ss_pred CCCcEEEEecCCcccccChhhHHHHHHHHHHHHHh-cCCCEEE-Eechhhh---hhhCCCCChhhHHh---hhhccccCc
Q 006783 518 SNPLGVMIARGDLAVECGWERLADMQEEILSICGA-AHVPVIW-ATQVLES---LVKFGVPTRAEITD---VASARRASC 589 (631)
Q Consensus 518 ~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~a-agkPvi~-ATQvLES---M~~~~~PtRAEvtD---va~a~gaD~ 589 (631)
+..-++.=||=- .|+.++..=..-|...-+. -|.|||+ +|+-+.. .-....--|.=|.. +|.|.|+|+
T Consensus 158 -n~~vilcERG~~---fgy~~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDG 233 (281)
T PRK12457 158 -NDRVILCERGSS---FGYDNLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAG 233 (281)
T ss_pred -CCeEEEEeCCCC---CCCCCcccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCE
Confidence 335556678842 4777665444444443332 3999997 2221100 00000111222333 555589999
Q ss_pred ccccCCccHHH
Q 006783 590 VMLNKGKHVVE 600 (631)
Q Consensus 590 vmLskG~ypve 600 (631)
+|+=.=+.|-+
T Consensus 234 l~iEvHpdP~~ 244 (281)
T PRK12457 234 LFLEAHPDPDR 244 (281)
T ss_pred EEEEecCCccc
Confidence 99954444433
No 107
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=70.44 E-value=9.2 Score=41.33 Aligned_cols=47 Identities=28% Similarity=0.498 Sum_probs=37.7
Q ss_pred EEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHH
Q 006783 173 IMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTS 219 (631)
Q Consensus 173 ImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a 219 (631)
+-+-+|......+ +..++++|.++.=||++||+++.|.++|+.+|+.
T Consensus 85 v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~ 132 (325)
T cd00381 85 VGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK 132 (325)
T ss_pred EEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4444554223334 9999999999999999999999999999999974
No 108
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=69.54 E-value=35 Score=37.69 Aligned_cols=140 Identities=14% Similarity=0.207 Sum_probs=81.3
Q ss_pred cCCEEEEeccCChhHHH---HHHHHHHHhCCCCceEEEee--cChhhhcchHHHHHHhhcCCCCcEEEEecCCccccc--
Q 006783 462 HADMVGISFVRDSCDIA---MLRKELEKRKVQNLGVVLKI--ETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVEC-- 534 (631)
Q Consensus 462 ~~D~V~~SFV~sa~Dv~---~lr~~L~~~~~~~~~IiaKI--Et~~av~NL~eIl~~a~~~~~~DGImIaRGDL~vei-- 534 (631)
++|+|=++ |.+.++.. ++++.|.+.| .++.+||-| .-..|++.++. +|.|=|-||.++-++
T Consensus 44 GceivRva-vp~~~~a~al~~I~~~l~~~g-~~iPlVADIHFd~~lAl~a~~~----------v~kiRINPGNi~~~~~~ 111 (359)
T PF04551_consen 44 GCEIVRVA-VPDMEAAEALKEIKKRLRALG-SPIPLVADIHFDYRLALEAIEA----------VDKIRINPGNIVDEFQE 111 (359)
T ss_dssp T-SEEEEE-E-SHHHHHHHHHHHHHHHCTT--SS-EEEEESTTCHHHHHHHHC-----------SEEEE-TTTSS----S
T ss_pred CCCEEEEc-CCCHHHHHHHHHHHHhhccCC-CCCCeeeecCCCHHHHHHHHHH----------hCeEEECCCcccccccc
Confidence 79998777 34555554 4555555566 569999998 44455443222 499999999996322
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEec--hh-hhhhhCCCCChhhHHhhhhc-------cccCccccc-CCccHHHHHH
Q 006783 535 GWERLADMQEEILSICGAAHVPVIWATQ--VL-ESLVKFGVPTRAEITDVASA-------RRASCVMLN-KGKHVVEAVS 603 (631)
Q Consensus 535 g~e~l~~~Qk~Ii~~c~aagkPvi~ATQ--vL-ESM~~~~~PtRAEvtDva~a-------~gaD~vmLs-kG~ypveAV~ 603 (631)
+...+.+--++++..|+++|+|+=+-.+ =| +.|.+.--||..-+...|.- .|.+-+.+| |-..+..+|+
T Consensus 112 ~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSlKsSdv~~~i~ 191 (359)
T PF04551_consen 112 ELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISLKSSDVPETIE 191 (359)
T ss_dssp S-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEBSSHHHHHH
T ss_pred cccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChHHHHH
Confidence 2245667778899999999999955432 11 11111113444333333322 488889998 8888988888
Q ss_pred HHHHHHHHHh
Q 006783 604 TLDKILHINT 613 (631)
Q Consensus 604 ~L~~Il~r~e 613 (631)
.-..+.+++.
T Consensus 192 ayr~la~~~d 201 (359)
T PF04551_consen 192 AYRLLAERMD 201 (359)
T ss_dssp HHHHHHHH--
T ss_pred HHHHHHHhcC
Confidence 8777777665
No 109
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=68.91 E-value=16 Score=39.05 Aligned_cols=106 Identities=20% Similarity=0.211 Sum_probs=61.6
Q ss_pred eccCChhHHHHHHHHHHHhCCCCceEEEeecC-----hhhhcchHHHHHHhhcCCCCcEEEE-ecCCcccccChhhHHHH
Q 006783 469 SFVRDSCDIAMLRKELEKRKVQNLGVVLKIET-----KSGFERLPHILLEAMKSSNPLGVMI-ARGDLAVECGWERLADM 542 (631)
Q Consensus 469 SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt-----~~av~NL~eIl~~a~~~~~~DGImI-aRGDL~veig~e~l~~~ 542 (631)
...++++-+.++-+.+.+.- ++.|-+||=. .+-..++-.++..+ |+++|.| +| ...-.+.. +.-
T Consensus 102 ~Ll~~p~~~~~iv~~~~~~~--~~pvsvKiR~g~~~~~~~~~~~~~~l~~~----G~~~i~vH~R---t~~q~~~~-~a~ 171 (309)
T PF01207_consen 102 ALLKDPDLLAEIVKAVRKAV--PIPVSVKIRLGWDDSPEETIEFARILEDA----GVSAITVHGR---TRKQRYKG-PAD 171 (309)
T ss_dssp GGGC-HHHHHHHHHHHHHH---SSEEEEEEESECT--CHHHHHHHHHHHHT----T--EEEEECS----TTCCCTS----
T ss_pred hhhcChHHhhHHHHhhhccc--ccceEEecccccccchhHHHHHHHHhhhc----ccceEEEecC---chhhcCCc-ccc
Confidence 45678888888777777643 4778888843 23233344445544 7899988 66 22223333 444
Q ss_pred HHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 543 QEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 543 Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
.+.|-+.+++..+|||. +-.+=|++++......-|+|+||+.
T Consensus 172 w~~i~~i~~~~~ipvi~---------NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 172 WEAIAEIKEALPIPVIA---------NGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHHHHCHHC-TSEEEE---------ESS--SHHHHHHHCCCH-SSEEEES
T ss_pred hHHHHHHhhcccceeEE---------cCccCCHHHHHHHHHhcCCcEEEEc
Confidence 45566677778899996 5567777776665555699999996
No 110
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=68.62 E-value=54 Score=35.39 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=60.9
Q ss_pred HHhHHHHHh-cCCEEEEeccCC-hhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCc
Q 006783 453 LMDLEFVAS-HADMVGISFVRD-SCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDL 530 (631)
Q Consensus 453 ~~dl~f~~~-~~D~V~~SFV~s-a~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL 530 (631)
.+.+..+++ .+++|.++|=.- .+-++. +++.| +.++.++-|.+....+ ..+ |+|+|++-=.+=
T Consensus 103 ~~~~~~~~~~~~~~v~~~~G~p~~~~i~~----l~~~g---i~v~~~v~s~~~A~~a----~~~----G~D~iv~qG~eA 167 (330)
T PF03060_consen 103 EEQLDVALEAKPDVVSFGFGLPPPEVIER----LHAAG---IKVIPQVTSVREARKA----AKA----GADAIVAQGPEA 167 (330)
T ss_dssp HHHHHHHHHS--SEEEEESSSC-HHHHHH----HHHTT----EEEEEESSHHHHHHH----HHT----T-SEEEEE-TTS
T ss_pred ccccccccccceEEEEeecccchHHHHHH----HHHcC---CccccccCCHHHHHHh----hhc----CCCEEEEecccc
Confidence 344666666 699999999876 333333 44444 8899999887765432 222 689988853344
Q ss_pred ccccCh--hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 531 AVECGW--ERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 531 ~veig~--e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
|-..|. +.+.....++. ....+|||.|- |+-+...+- .+.+.|||+|.+.
T Consensus 168 GGH~g~~~~~~~~L~~~v~---~~~~iPViaAG---------GI~dg~~ia-aal~lGA~gV~~G 219 (330)
T PF03060_consen 168 GGHRGFEVGSTFSLLPQVR---DAVDIPVIAAG---------GIADGRGIA-AALALGADGVQMG 219 (330)
T ss_dssp SEE---SSG-HHHHHHHHH---HH-SS-EEEES---------S--SHHHHH-HHHHCT-SEEEES
T ss_pred CCCCCccccceeeHHHHHh---hhcCCcEEEec---------CcCCHHHHH-HHHHcCCCEeecC
Confidence 444441 12344444443 44459999987 455554432 4444799999985
No 111
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=68.50 E-value=78 Score=31.70 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=61.6
Q ss_pred cHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCc
Q 006783 452 DLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDL 530 (631)
Q Consensus 452 D~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL 530 (631)
..+.++.+.+ ++|+|.++.-.+.+.++. +.+. .+.++.++.+. +.+..+.. . +.|+|.+....-
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~~~~~~~~~----~~~~---~i~~i~~v~~~---~~~~~~~~-~----gad~i~~~~~~~ 133 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFGPPAEVVER----LKAA---GIKVIPTVTSV---EEARKAEA-A----GADALVAQGAEA 133 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCHHHHHH----HHHc---CCEEEEeCCCH---HHHHHHHH-c----CCCEEEEeCcCC
Confidence 3345566666 799999987755443333 3332 46788888764 23333332 2 579887733211
Q ss_pred ccccChhhHHHHHHHHHHHHH-hcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 531 AVECGWERLADMQEEILSICG-AAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 531 ~veig~e~l~~~Qk~Ii~~c~-aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
+-..+... ....+.+..++ ..++|++.+- ++-+...+..+. ..|+|+|++.
T Consensus 134 ~G~~~~~~--~~~~~~i~~i~~~~~~Pvi~~G---------GI~~~~~v~~~l-~~GadgV~vg 185 (236)
T cd04730 134 GGHRGTFD--IGTFALVPEVRDAVDIPVIAAG---------GIADGRGIAAAL-ALGADGVQMG 185 (236)
T ss_pred CCCCCccc--cCHHHHHHHHHHHhCCCEEEEC---------CCCCHHHHHHHH-HcCCcEEEEc
Confidence 11111110 01123333333 3479999754 555544444433 3699999997
No 112
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=67.98 E-value=79 Score=35.41 Aligned_cols=126 Identities=21% Similarity=0.246 Sum_probs=75.5
Q ss_pred HHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEE-eecChhhhcchHHHHHHhhcCCCCcEEEEecC-Cc-ccc
Q 006783 458 FVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVL-KIETKSGFERLPHILLEAMKSSNPLGVMIARG-DL-AVE 533 (631)
Q Consensus 458 f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~Iia-KIEt~~av~NL~eIl~~a~~~~~~DGImIaRG-DL-~ve 533 (631)
.+.+ ++|++.+.+.-+.+.+....+.+++.| +.++. .|.....++.+.++.. ++|.|++.+| |= +..
T Consensus 245 ~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~G---ikvgVD~lnp~tp~e~i~~l~~------~vD~Vllht~vdp~~~~ 315 (391)
T PRK13307 245 MAADATADAVVISGLAPISTIEKAIHEAQKTG---IYSILDMLNVEDPVKLLESLKV------KPDVVELHRGIDEEGTE 315 (391)
T ss_pred HHHhcCCCEEEEeccCCHHHHHHHHHHHHHcC---CEEEEEEcCCCCHHHHHHHhhC------CCCEEEEccccCCCccc
Confidence 3444 799999999877778888888888876 23333 4433334556666632 4688888762 21 223
Q ss_pred cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHHHHHHHH
Q 006783 534 CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVSTLDKIL 609 (631)
Q Consensus 534 ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~~L~~Il 609 (631)
-+++++.++.+. ..+.++.++- -=+...+.++ ...|+|.+.+. +-+-|.++++.+.+.+
T Consensus 316 ~~~~kI~~ikk~------~~~~~I~VdG----------GI~~eti~~l-~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 316 HAWGNIKEIKKA------GGKILVAVAG----------GVRVENVEEA-LKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred chHHHHHHHHHh------CCCCcEEEEC----------CcCHHHHHHH-HHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 333433333222 2356777653 2222223333 34799988876 4467999988877766
No 113
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=67.68 E-value=93 Score=36.58 Aligned_cols=150 Identities=14% Similarity=0.163 Sum_probs=97.2
Q ss_pred hcHHhHHHHHh-cCCEEEEeccCChhH---HHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEe
Q 006783 451 KDLMDLEFVAS-HADMVGISFVRDSCD---IAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIA 526 (631)
Q Consensus 451 kD~~dl~f~~~-~~D~V~~SFV~sa~D---v~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIa 526 (631)
.-.+.+....+ ++|+|=+. |++.++ +..+++.|.+.| -++.+||-|== -+.+...|+.. +|.|=|-
T Consensus 46 atv~Qi~~L~~aGceiVRvt-vp~~~~A~al~~I~~~L~~~g-~~iPLVADIHF------~~~~A~~a~~~--vdkiRIN 115 (606)
T PRK00694 46 GTVRQICALQEWGCDIVRVT-VQGLKEAQACEHIKERLIQQG-ISIPLVADIHF------FPQAAMHVADF--VDKVRIN 115 (606)
T ss_pred HHHHHHHHHHHcCCCEEEEc-CCCHHHHHhHHHHHHHHhccC-CCCCEEeecCC------ChHHHHHHHHh--cCceEEC
Confidence 33444444444 79998776 445444 555555566566 56999999842 11222222222 5999999
Q ss_pred cCCccc---------------ccChhhHHHHHHHHHHHHHhcCCCEEEEec-------hhhhhhhCCCCChhhHHhhhhc
Q 006783 527 RGDLAV---------------ECGWERLADMQEEILSICGAAHVPVIWATQ-------VLESLVKFGVPTRAEITDVASA 584 (631)
Q Consensus 527 RGDL~v---------------eig~e~l~~~Qk~Ii~~c~aagkPvi~ATQ-------vLESM~~~~~PtRAEvtDva~a 584 (631)
||.++- .-.++++.+--+.++.+|+++|+|+=+-|+ +++. .+ +|..-+...|.-
T Consensus 116 PGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~---yG-~tpegmVeSAle 191 (606)
T PRK00694 116 PGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQR---YG-DTIEGMVYSALE 191 (606)
T ss_pred CcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHH---hC-CCHHHHHHHHHH
Confidence 999986 123456777778899999999999976653 3321 22 344333332222
Q ss_pred -------cccCccccc-CCccHHHHHHHHHHHHHHHhh
Q 006783 585 -------RRASCVMLN-KGKHVVEAVSTLDKILHINTA 614 (631)
Q Consensus 585 -------~gaD~vmLs-kG~ypveAV~~L~~Il~r~e~ 614 (631)
.|.+-+.+| |-..|...|+.-+.+.++|++
T Consensus 192 ~~~i~e~~~f~diviS~KsSnv~~mi~AyrlLa~~~d~ 229 (606)
T PRK00694 192 YIEVCEKLDYRDVVFSMKSSNPKVMVAAYRQLAKDLDA 229 (606)
T ss_pred HHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHHhhc
Confidence 478888888 999999999998888888863
No 114
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=67.65 E-value=1.4e+02 Score=36.07 Aligned_cols=144 Identities=14% Similarity=0.187 Sum_probs=92.9
Q ss_pred HHHHHh-cCCEEEEeccCChhHH---HHHHHHHHHhCCCCceEEEeecC--hhhhcchHHHHHHhhcCCCCcEEEEecCC
Q 006783 456 LEFVAS-HADMVGISFVRDSCDI---AMLRKELEKRKVQNLGVVLKIET--KSGFERLPHILLEAMKSSNPLGVMIARGD 529 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV~sa~Dv---~~lr~~L~~~~~~~~~IiaKIEt--~~av~NL~eIl~~a~~~~~~DGImIaRGD 529 (631)
+....+ ++|+|=+. |++.++. ..+++.|.+.| -++.+||-|-= .-|++ ++.. +|.|=|-||.
T Consensus 116 i~~l~~aGceiVRvt-v~~~~~A~al~~I~~~L~~~g-~~iPLVADIHF~~~~Al~--------a~~~--vdkiRINPGN 183 (733)
T PLN02925 116 VMRIADKGADIVRIT-VQGKKEADACFEIKNTLVQKG-YNIPLVADIHFAPSVALR--------VAEC--FDKIRVNPGN 183 (733)
T ss_pred HHHHHHcCCCEEEEc-CCCHHHHHhHHHHHHHHhhcC-CCCCEEEecCCCHHHHHH--------HHHh--cCCeEECCcc
Confidence 333333 79998776 4455554 45555555556 46999999832 33332 2222 4999999999
Q ss_pred ccccc---------------ChhhHHHHHHHHHHHHHhcCCCEEEEec-------hhhhhhhCCCCChhhHHhhh-----
Q 006783 530 LAVEC---------------GWERLADMQEEILSICGAAHVPVIWATQ-------VLESLVKFGVPTRAEITDVA----- 582 (631)
Q Consensus 530 L~vei---------------g~e~l~~~Qk~Ii~~c~aagkPvi~ATQ-------vLESM~~~~~PtRAEvtDva----- 582 (631)
++-.- .++++.+--..++.+|+++|+|+=+-|+ +++ +.+ +|..-+...|
T Consensus 184 ~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~---~yG-dtp~gmVeSAle~~~ 259 (733)
T PLN02925 184 FADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMS---YYG-DSPRGMVESAFEFAR 259 (733)
T ss_pred cCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHH---HhC-CChHHHHHHHHHHHH
Confidence 98763 1235555555799999999999976653 222 112 2322222222
Q ss_pred --hccccCccccc-CCccHHHHHHHHHHHHHHHhhc
Q 006783 583 --SARRASCVMLN-KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 583 --~a~gaD~vmLs-kG~ypveAV~~L~~Il~r~e~~ 615 (631)
...|.+-+.+| |-..|...|...+.+..++...
T Consensus 260 i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~ 295 (733)
T PLN02925 260 ICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVL 295 (733)
T ss_pred HHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhc
Confidence 22588888888 9999999999999998887654
No 115
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=67.26 E-value=1.3e+02 Score=31.39 Aligned_cols=125 Identities=17% Similarity=0.171 Sum_probs=73.3
Q ss_pred HHHHHh-cCCEEEEecc-CChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccc
Q 006783 456 LEFVAS-HADMVGISFV-RDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVE 533 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV-~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve 533 (631)
+.-+.. +||+|.+--- .+.+++.++.+...+.| +.+++-+-|.+-++. +... |+|-|.+..-||...
T Consensus 126 i~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG---l~~lvevh~~~E~~~----A~~~----gadiIgin~rdl~~~ 194 (260)
T PRK00278 126 IYEARAAGADAILLIVAALDDEQLKELLDYAHSLG---LDVLVEVHDEEELER----ALKL----GAPLIGINNRNLKTF 194 (260)
T ss_pred HHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC---CeEEEEeCCHHHHHH----HHHc----CCCEEEECCCCcccc
Confidence 455555 7999988533 35667777777776654 345555545543322 1122 679888876676433
Q ss_pred -cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHHHHH
Q 006783 534 -CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVSTLD 606 (631)
Q Consensus 534 -ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~~L~ 606 (631)
..++.+ ++++.... ...|+|. ..|+=|..++..+.. .|+|+|.+. +-+.|.++++-+.
T Consensus 195 ~~d~~~~----~~l~~~~p-~~~~vIa---------egGI~t~ed~~~~~~-~Gad~vlVGsaI~~~~dp~~~~~~l~ 257 (260)
T PRK00278 195 EVDLETT----ERLAPLIP-SDRLVVS---------ESGIFTPEDLKRLAK-AGADAVLVGESLMRADDPGAALRELL 257 (260)
T ss_pred cCCHHHH----HHHHHhCC-CCCEEEE---------EeCCCCHHHHHHHHH-cCCCEEEECHHHcCCCCHHHHHHHHh
Confidence 233333 23322221 1346664 456667666555544 499999886 6688998887553
No 116
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=67.09 E-value=31 Score=37.92 Aligned_cols=97 Identities=20% Similarity=0.133 Sum_probs=62.4
Q ss_pred hhcHHhHHHHHh-cCCEEEEecc----------CChhHHHHHHHHHHHhCCCCceEEEee-cChhhhcchHHHHHHhhcC
Q 006783 450 TKDLMDLEFVAS-HADMVGISFV----------RDSCDIAMLRKELEKRKVQNLGVVLKI-ETKSGFERLPHILLEAMKS 517 (631)
Q Consensus 450 ekD~~dl~f~~~-~~D~V~~SFV----------~sa~Dv~~lr~~L~~~~~~~~~IiaKI-Et~~av~NL~eIl~~a~~~ 517 (631)
..++++++.+++ +||.|-+++= -+.+|+.+..+++.++|. ...+..-+ =....++.+.+.+... ..
T Consensus 13 ag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gk-k~~V~~N~~~~~~~~~~~~~~l~~l-~e 90 (347)
T COG0826 13 AGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGK-KVYVAVNTLLHNDELETLERYLDRL-VE 90 (347)
T ss_pred CCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCC-eEEEEeccccccchhhHHHHHHHHH-HH
Confidence 467888899887 6999999844 467789999999988873 22222211 1111122122222211 12
Q ss_pred CCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcC--CCEEEEechh
Q 006783 518 SNPLGVMIARGDLAVECGWERLADMQEEILSICGAAH--VPVIWATQVL 564 (631)
Q Consensus 518 ~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aag--kPvi~ATQvL 564 (631)
.|+|+|+++ |++ ++..|+..+ .|+.+.||+-
T Consensus 91 ~GvDaviv~--Dpg--------------~i~l~~e~~p~l~ih~S~q~~ 123 (347)
T COG0826 91 LGVDAVIVA--DPG--------------LIMLARERGPDLPIHVSTQAN 123 (347)
T ss_pred cCCCEEEEc--CHH--------------HHHHHHHhCCCCcEEEeeeEe
Confidence 278999995 554 467888888 9999999975
No 117
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=67.03 E-value=1.4e+02 Score=32.86 Aligned_cols=132 Identities=18% Similarity=0.197 Sum_probs=92.7
Q ss_pred cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeec--ChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhH
Q 006783 462 HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIE--TKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERL 539 (631)
Q Consensus 462 ~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIE--t~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l 539 (631)
++|+|=++ |.+.++.+.++.+-+. .++.+||-|- -+.|+.. + . .++|.|=|-||.++-
T Consensus 47 GceiVRva-vp~~~~A~al~~I~~~---~~iPlVADIHFd~~lAl~a---~--~----~g~dkiRINPGNig~------- 106 (346)
T TIGR00612 47 GCDIVRVT-VPDRESAAAFEAIKEG---TNVPLVADIHFDYRLAALA---M--A----KGVAKVRINPGNIGF------- 106 (346)
T ss_pred CCCEEEEc-CCCHHHHHhHHHHHhC---CCCCEEEeeCCCcHHHHHH---H--H----hccCeEEECCCCCCC-------
Confidence 79999988 7788888888876542 4689999994 2333321 1 1 267999999999877
Q ss_pred HHHHHHHHHHHHhcCCCEEEEec--hh--hhhhhCCCCChhhHHhhhhc-------cccCccccc-CCccHHHHHHHHHH
Q 006783 540 ADMQEEILSICGAAHVPVIWATQ--VL--ESLVKFGVPTRAEITDVASA-------RRASCVMLN-KGKHVVEAVSTLDK 607 (631)
Q Consensus 540 ~~~Qk~Ii~~c~aagkPvi~ATQ--vL--ESM~~~~~PtRAEvtDva~a-------~gaD~vmLs-kG~ypveAV~~L~~ 607 (631)
.+--++++..|+++|+|+=+-.+ =| +=|.+.+.||..-+..-|.- .|.+=+.+| |-..+..+|+.-..
T Consensus 107 ~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~KsSdv~~~i~ayr~ 186 (346)
T TIGR00612 107 RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKASDVAETVAAYRL 186 (346)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHH
Confidence 35567889999999999954332 11 11335667877665554433 478888888 88888888887766
Q ss_pred HHHHHh
Q 006783 608 ILHINT 613 (631)
Q Consensus 608 Il~r~e 613 (631)
+.++++
T Consensus 187 la~~~d 192 (346)
T TIGR00612 187 LAERSD 192 (346)
T ss_pred HHhhCC
Confidence 666553
No 118
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=66.85 E-value=1.5e+02 Score=32.56 Aligned_cols=149 Identities=9% Similarity=0.074 Sum_probs=91.5
Q ss_pred CCChhcHHhHHHHHh--cCCEEEEec-cCChhHHHHHHHHHHHhCCCCceEEEeecC-hhhhcchHHHHHHhhcCCCCcE
Q 006783 447 GLTTKDLMDLEFVAS--HADMVGISF-VRDSCDIAMLRKELEKRKVQNLGVVLKIET-KSGFERLPHILLEAMKSSNPLG 522 (631)
Q Consensus 447 ~LTekD~~dl~f~~~--~~D~V~~SF-V~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt-~~av~NL~eIl~~a~~~~~~DG 522 (631)
.+|.+|+..|...+. ++|.|-++| +.+.+|.+.++...+ .+ .+..|.+-+-. .+. ++..+. + |+|.
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~-~~~~v~~~~r~~~~d---i~~a~~-~----g~~~ 87 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ-EG-LNAEICSLARALKKD---IDKAID-C----GVDS 87 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh-cC-CCcEEEEEcccCHHH---HHHHHH-c----CcCE
Confidence 467788877766554 799999876 466777777766554 33 34556655532 222 232222 2 5676
Q ss_pred EEE--ecCCcccc----cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccccc
Q 006783 523 VMI--ARGDLAVE----CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN 593 (631)
Q Consensus 523 ImI--aRGDL~ve----ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs 593 (631)
|.| .=.|+-.+ .+.++..+...+.+..|+++|..|.+... ..+.-+...+.+++.. .|+|.+.|.
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e------da~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE------DATRTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe------ecCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 655 43343221 34456667778889999999998876432 2344455555555544 599999997
Q ss_pred ---CCccHHHHHHHHHHHHHH
Q 006783 594 ---KGKHVVEAVSTLDKILHI 611 (631)
Q Consensus 594 ---kG~ypveAV~~L~~Il~r 611 (631)
-.-+|-+.-+.+..+..+
T Consensus 162 DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 162 DTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred CCCCccCHHHHHHHHHHHhcc
Confidence 355677766666665543
No 119
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=66.31 E-value=1.4e+02 Score=30.00 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=84.5
Q ss_pred CChhcHHhHHHHH-h-cCCEEEEe-ccCChhHHHHHHHHHHHhCCCCceEEEeec-Chhhhcc-hHHHHHHhhcCCCCcE
Q 006783 448 LTTKDLMDLEFVA-S-HADMVGIS-FVRDSCDIAMLRKELEKRKVQNLGVVLKIE-TKSGFER-LPHILLEAMKSSNPLG 522 (631)
Q Consensus 448 LTekD~~dl~f~~-~-~~D~V~~S-FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIE-t~~av~N-L~eIl~~a~~~~~~DG 522 (631)
++..++..+--.+ + ++|+|-++ ..-+.++...++...+.... ..+.+..- ....++. ++.+. .+ +.|.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~-~~----g~~~ 83 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAK-EA----GIDI 83 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHH-HT----TSSE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhH-hc----cCCE
Confidence 6667777665544 4 79999999 45678888888877665442 33333322 2223333 22222 22 5666
Q ss_pred EEE--ecCCcccc----cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccccc
Q 006783 523 VMI--ARGDLAVE----CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN 593 (631)
Q Consensus 523 ImI--aRGDL~ve----ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs 593 (631)
|.+ .-.|+-.. ...+...+..++++..+++.|..|.+... ..+..+..++.+++.. .|+|.+.|.
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE------DASRTDPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET------TTGGSSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc------ccccccHHHHHHHHHHHHHcCCeEEEee
Confidence 665 33442221 22355666777889999999999977542 3345566777776666 599999997
Q ss_pred --CCccHHHHHHHH
Q 006783 594 --KGKHVVEAVSTL 605 (631)
Q Consensus 594 --kG~ypveAV~~L 605 (631)
.|-..-+-|.-+
T Consensus 158 Dt~G~~~P~~v~~l 171 (237)
T PF00682_consen 158 DTVGIMTPEDVAEL 171 (237)
T ss_dssp ETTS-S-HHHHHHH
T ss_pred CccCCcCHHHHHHH
Confidence 666555544433
No 120
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=65.95 E-value=42 Score=36.16 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=58.6
Q ss_pred ccCChhHHHHHHHHHHHhCCCCceEEEeecCh--hhhcchHHHHHHhhcCCCCcEEEEecCCcc-cccChhhHHHHHHHH
Q 006783 470 FVRDSCDIAMLRKELEKRKVQNLGVVLKIETK--SGFERLPHILLEAMKSSNPLGVMIARGDLA-VECGWERLADMQEEI 546 (631)
Q Consensus 470 FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~--~av~NL~eIl~~a~~~~~~DGImIaRGDL~-veig~e~l~~~Qk~I 546 (631)
+.++++-+.++-+.+.+. -+..|.+||=.- ....+..+++... ...|+|+|.|--..-. .--|.... +.|
T Consensus 114 ll~~p~~~~eiv~av~~a--~d~pv~vKiR~G~~~~~~~~~~~a~~l-e~~G~d~i~vh~rt~~~~~~G~a~~----~~i 186 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNA--VDVPVTLKIRTGWAPEHRNCVEIAQLA-EDCGIQALTIHGRTRACLFNGEAEY----DSI 186 (321)
T ss_pred HhcCHHHHHHHHHHHHHh--cCCceEEEEEccccCCcchHHHHHHHH-HHhCCCEEEEecCccccccCCCcCh----HHH
Confidence 455566666666555432 256788998210 0111233333221 1227899977422211 11121221 233
Q ss_pred HHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 547 LSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 547 i~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
-...++.++|||.. -++-|.+++.++....|+|+||+.
T Consensus 187 ~~ik~~~~iPVI~n---------GgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 187 RAVKQKVSIPVIAN---------GDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred HHHHHhcCCcEEEe---------CCCCCHHHHHHHHhccCCCEEEEC
Confidence 33445568999973 456677777777666799999997
No 121
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=65.65 E-value=48 Score=34.41 Aligned_cols=94 Identities=21% Similarity=0.278 Sum_probs=54.4
Q ss_pred hhhcchHHHHHHhhcCCCCcEEEEecCCcccc---cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhH
Q 006783 502 SGFERLPHILLEAMKSSNPLGVMIARGDLAVE---CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEI 578 (631)
Q Consensus 502 ~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve---ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEv 578 (631)
++++++-+-+... |++||++. | -+-| +..++-.++.+.+.+.+. -.+|||+-+ +.++-.|.
T Consensus 18 ~~~~~~i~~l~~~----Gv~gi~~~-G-stGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv---------~~~~~~~~ 81 (281)
T cd00408 18 DALRRLVEFLIEA----GVDGLVVL-G-TTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGV---------GANSTREA 81 (281)
T ss_pred HHHHHHHHHHHHc----CCCEEEEC-C-CCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEec---------CCccHHHH
Confidence 3444444444333 78999985 3 2223 223444444444444432 257888644 45566666
Q ss_pred Hhhhhc---cccCcccccC----CccHHHHHHHHHHHHHH
Q 006783 579 TDVASA---RRASCVMLNK----GKHVVEAVSTLDKILHI 611 (631)
Q Consensus 579 tDva~a---~gaD~vmLsk----G~ypveAV~~L~~Il~r 611 (631)
.+.+.. .|+|++|+.- .+-.-+.++....|+..
T Consensus 82 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~ 121 (281)
T cd00408 82 IELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA 121 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc
Confidence 665544 6999999972 23456778888888775
No 122
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=65.31 E-value=14 Score=40.63 Aligned_cols=49 Identities=22% Similarity=0.462 Sum_probs=42.2
Q ss_pred eEEEEecCCCCChHH-HHHHHHh--CCCEEEeecCCCChHHHHHHHHHHHHH
Q 006783 171 NHIMVTVGQEASESE-ISDILKA--GASIIRINCAHGNPSIWSEIIRRVKTS 219 (631)
Q Consensus 171 TkImvTlgp~aa~~~-i~~Li~a--GMdvaRINcAHg~~e~w~~mI~~vR~a 219 (631)
-+++|.+|..-.+.+ +..|+++ |.|+.=|..|||..+.-.+||+.||+.
T Consensus 97 ~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~ 148 (346)
T PRK05096 97 KHVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREA 148 (346)
T ss_pred ceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHh
Confidence 467888887555556 9999994 999999999999999999999999984
No 123
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=65.12 E-value=1.6e+02 Score=30.24 Aligned_cols=132 Identities=13% Similarity=0.158 Sum_probs=81.6
Q ss_pred hHH-HHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccc
Q 006783 455 DLE-FVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVE 533 (631)
Q Consensus 455 dl~-f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve 533 (631)
.++ |+..++|+|.+=+ ++..++.++-+.+++.| -..++..+=.| -++.+..++... |.|+| ++++
T Consensus 73 ~i~~~~~~gad~i~~H~-Ea~~~~~~~l~~ik~~g-~k~GlalnP~T--p~~~i~~~l~~~------D~vlv----MtV~ 138 (220)
T PRK08883 73 IIPDFAKAGASMITFHV-EASEHVDRTLQLIKEHG-CQAGVVLNPAT--PLHHLEYIMDKV------DLILL----MSVN 138 (220)
T ss_pred HHHHHHHhCCCEEEEcc-cCcccHHHHHHHHHHcC-CcEEEEeCCCC--CHHHHHHHHHhC------CeEEE----EEec
Confidence 444 4445899998864 55567877778888887 56899999999 577888888754 99998 4555
Q ss_pred cChh---hHHHHHHHHHHH---HHhc--CCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHH
Q 006783 534 CGWE---RLADMQEEILSI---CGAA--HVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEA 601 (631)
Q Consensus 534 ig~e---~l~~~Qk~Ii~~---c~aa--gkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveA 601 (631)
-|+. -++..-++|-+. ..+. ++|+.+. |-=+...+. .....|||++... +-+-|.++
T Consensus 139 PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vd----------GGI~~eni~-~l~~aGAd~vVvGSaIf~~~d~~~~ 207 (220)
T PRK08883 139 PGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEID----------GGVKVDNIR-EIAEAGADMFVAGSAIFGQPDYKAV 207 (220)
T ss_pred CCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEE----------CCCCHHHHH-HHHHcCCCEEEEeHHHhCCCCHHHH
Confidence 5541 222222233222 2333 3666442 223333322 2233688888775 34568888
Q ss_pred HHHHHHHHHH
Q 006783 602 VSTLDKILHI 611 (631)
Q Consensus 602 V~~L~~Il~r 611 (631)
++.+.+.+.+
T Consensus 208 i~~l~~~~~~ 217 (220)
T PRK08883 208 IDEMRAELAK 217 (220)
T ss_pred HHHHHHHHHh
Confidence 8888776543
No 124
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=65.12 E-value=35 Score=35.02 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=48.4
Q ss_pred CCCcEEEEecCCc-cc----ccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc----cccC
Q 006783 518 SNPLGVMIARGDL-AV----ECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA----RRAS 588 (631)
Q Consensus 518 ~~~DGImIaRGDL-~v----eig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a----~gaD 588 (631)
.+++.|+|.-=.| .. +--.+++..+-+++=..|+..++||++++|+=-.--+.. +.+.-++|+..+ ..||
T Consensus 129 ~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~-~~~p~l~dl~~sg~Ie~~AD 207 (259)
T PF03796_consen 129 KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIALSQLNREAEDRE-DKRPSLSDLRESGAIEQDAD 207 (259)
T ss_dssp TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSS-SCS--HHHHCSTSSHHHH-S
T ss_pred cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEccccChhhhccc-ccccchhhhhhhHHHHHHHh
Confidence 3567777754333 11 123467888888999999999999999999876654432 223334555544 5799
Q ss_pred ccccc
Q 006783 589 CVMLN 593 (631)
Q Consensus 589 ~vmLs 593 (631)
.||+-
T Consensus 208 ~vl~l 212 (259)
T PF03796_consen 208 VVLFL 212 (259)
T ss_dssp EEEEE
T ss_pred hhhhh
Confidence 99874
No 125
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=64.14 E-value=1.1e+02 Score=30.76 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=67.3
Q ss_pred cHHhHHHHHh-cCCEEEEec--cCChhHHHHHHHHHHHhCCCCceEEEeecCh------hh-----hcchHHHHHHhhcC
Q 006783 452 DLMDLEFVAS-HADMVGISF--VRDSCDIAMLRKELEKRKVQNLGVVLKIETK------SG-----FERLPHILLEAMKS 517 (631)
Q Consensus 452 D~~dl~f~~~-~~D~V~~SF--V~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~------~a-----v~NL~eIl~~a~~~ 517 (631)
+.+|++.+.+ ++|.|.++. ..+++.+.++.+.. + +++ +.-|..+ .+ -.++.+++... ..
T Consensus 85 ~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~---~-~~i--~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~-~~ 157 (233)
T PRK00748 85 SLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKF---P-GKI--VVGLDARDGKVATDGWLETSGVTAEDLAKRF-ED 157 (233)
T ss_pred CHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHh---C-CCc--eeeeeccCCEEEEccCeecCCCCHHHHHHHH-Hh
Confidence 5566666665 688887754 34555554444333 2 222 1122211 01 12334444332 22
Q ss_pred CCCcEEEEe-cCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc---
Q 006783 518 SNPLGVMIA-RGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN--- 593 (631)
Q Consensus 518 ~~~DGImIa-RGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs--- 593 (631)
.|++.|++- +.-=+..-|+ ++ +.+-..|+....|+|.+. ++-|..++..+...-|+|+||+.
T Consensus 158 ~g~~~ii~~~~~~~g~~~G~-d~----~~i~~l~~~~~ipvia~G---------Gi~~~~di~~~~~~g~~~gv~vg~a~ 223 (233)
T PRK00748 158 AGVKAIIYTDISRDGTLSGP-NV----EATRELAAAVPIPVIASG---------GVSSLDDIKALKGLGAVEGVIVGRAL 223 (233)
T ss_pred cCCCEEEEeeecCcCCcCCC-CH----HHHHHHHHhCCCCEEEeC---------CCCCHHHHHHHHHcCCccEEEEEHHH
Confidence 356877764 3322222332 22 222233455679999754 67788887777776569999997
Q ss_pred -CCccHH
Q 006783 594 -KGKHVV 599 (631)
Q Consensus 594 -kG~ypv 599 (631)
.|.++.
T Consensus 224 ~~~~~~~ 230 (233)
T PRK00748 224 YEGKFDL 230 (233)
T ss_pred HcCCcCc
Confidence 565543
No 126
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=63.91 E-value=2e+02 Score=30.50 Aligned_cols=119 Identities=10% Similarity=-0.017 Sum_probs=67.4
Q ss_pred cCCEEEEecc-----------CChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCC--CCcEEEEe--
Q 006783 462 HADMVGISFV-----------RDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSS--NPLGVMIA-- 526 (631)
Q Consensus 462 ~~D~V~~SFV-----------~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~--~~DGImIa-- 526 (631)
++|+|-+.+- ++++.+.++-+.+++. -++.|++||=--...+++.+++... ... |+|||.+.
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~--~~iPv~vKl~p~~~~~~~~~~a~~l-~~~~~G~~gi~~~Nt 195 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAA--YSIPVGVKTPPYTDPAQFDTLAEAL-NAFACPISFITATNT 195 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCHHHHHHHHHHH-hccccCCcEEEEEcc
Confidence 3788877543 2344455544444443 3588999994322223455655543 233 67888841
Q ss_pred ----------cCC--cc--ccc----ChhhHHHHHHHHHHHHHhc--CCCEEEEechhhhhhhCCCCChhhHHhhhhccc
Q 006783 527 ----------RGD--LA--VEC----GWERLADMQEEILSICGAA--HVPVIWATQVLESLVKFGVPTRAEITDVASARR 586 (631)
Q Consensus 527 ----------RGD--L~--vei----g~e~l~~~Qk~Ii~~c~aa--gkPvi~ATQvLESM~~~~~PtRAEvtDva~a~g 586 (631)
|.- +. ... |..--+...+.|-...++. ++|+|-.. ++-|...+-+..+ .|
T Consensus 196 ~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~G---------GI~s~~da~e~l~-aG 265 (294)
T cd04741 196 LGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVG---------GVLDGRGAFRMRL-AG 265 (294)
T ss_pred CCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeC---------CCCCHHHHHHHHH-cC
Confidence 222 11 111 1123455555555555656 38998644 5667666666555 69
Q ss_pred cCccccc
Q 006783 587 ASCVMLN 593 (631)
Q Consensus 587 aD~vmLs 593 (631)
||+||+.
T Consensus 266 A~~Vqv~ 272 (294)
T cd04741 266 ASAVQVG 272 (294)
T ss_pred CCceeEc
Confidence 9999997
No 127
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=63.77 E-value=58 Score=34.44 Aligned_cols=151 Identities=16% Similarity=0.105 Sum_probs=89.8
Q ss_pred CCCChhcHHhHH-HHHhc-CCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhc--CCCCc
Q 006783 446 EGLTTKDLMDLE-FVASH-ADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMK--SSNPL 521 (631)
Q Consensus 446 p~LTekD~~dl~-f~~~~-~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~--~~~~D 521 (631)
|..|++|++.+- .+.++ -.|-+ -+=++..|..+++.|...+..++.|.+=|==|.|-...+..+.++-. ..|.|
T Consensus 21 p~~T~~~I~~lc~eA~~~~~~faa--VcV~P~~v~~a~~~L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~~GAd 98 (257)
T PRK05283 21 DDDTDEKVIALCHQAKTPVGNTAA--ICIYPRFIPIARKTLREQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAYGAD 98 (257)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeE--EEECHHHHHHHHHHhcccCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 778888887654 45552 23333 23367899999999964331147777778666666666655554410 01223
Q ss_pred EEEEecCCcccccCh---hhHHHHHHHHHHHHHhcC--CC--EEEEechhhhhhhCCCCChhh----HHhhhhccccCcc
Q 006783 522 GVMIARGDLAVECGW---ERLADMQEEILSICGAAH--VP--VIWATQVLESLVKFGVPTRAE----ITDVASARRASCV 590 (631)
Q Consensus 522 GImIaRGDL~veig~---e~l~~~Qk~Ii~~c~aag--kP--vi~ATQvLESM~~~~~PtRAE----vtDva~a~gaD~v 590 (631)
-| |+-+.+|. .+...+.++|.+.+++++ +| ||+=|-.| |..| ++.++...|||.|
T Consensus 99 Ei-----D~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L---------~~ee~i~~a~~~a~~aGADFV 164 (257)
T PRK05283 99 EV-----DVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGEL---------KDEALIRKASEIAIKAGADFI 164 (257)
T ss_pred EE-----eeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEecccc---------CCHHHHHHHHHHHHHhCCCEE
Confidence 32 33344443 244455555555555433 43 46544433 4443 4445555799999
Q ss_pred cccCCccH----HHHHHHHHHHHHHH
Q 006783 591 MLNKGKHV----VEAVSTLDKILHIN 612 (631)
Q Consensus 591 mLskG~yp----veAV~~L~~Il~r~ 612 (631)
=-|.|..| ++.|+.|.+.++++
T Consensus 165 KTSTGf~~~gAt~edv~lm~~~i~~~ 190 (257)
T PRK05283 165 KTSTGKVPVNATLEAARIMLEVIRDM 190 (257)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 99977654 78999998888764
No 128
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=63.59 E-value=1.1e+02 Score=32.35 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=55.0
Q ss_pred HHHHHh-cCCEEEEeccCC-------hhHHHHHHHHHHHhCCCCceEEEee-cChhhhcchHHHHHHhhcCCCCcEEEEe
Q 006783 456 LEFVAS-HADMVGISFVRD-------SCDIAMLRKELEKRKVQNLGVVLKI-ETKSGFERLPHILLEAMKSSNPLGVMIA 526 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV~s-------a~Dv~~lr~~L~~~~~~~~~IiaKI-Et~~av~NL~eIl~~a~~~~~~DGImIa 526 (631)
++.+.+ ++|.|.+.+=.. .+.++.+++.+ ++.|+.|. -|.+- . ..+.. .|+|+|.+.
T Consensus 135 i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~------~~pvivK~v~s~~~---a-~~a~~----~G~d~I~v~ 200 (299)
T cd02809 135 LRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQW------KGPLILKGILTPED---A-LRAVD----AGADGIVVS 200 (299)
T ss_pred HHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhc------CCCEEEeecCCHHH---H-HHHHH----CCCCEEEEc
Confidence 444444 688887754211 14454454432 35788884 22211 1 11222 278999883
Q ss_pred -cCCccccc--ChhhHHHHHHHHHHHHHhc--CCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 527 -RGDLAVEC--GWERLADMQEEILSICGAA--HVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 527 -RGDL~vei--g~e~l~~~Qk~Ii~~c~aa--gkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
+| +... |...+ ..+.+.+++. .+|||.+. ++-+-.++-... +.|||+||+.
T Consensus 201 ~~g--G~~~~~g~~~~----~~l~~i~~~~~~~ipvia~G---------GI~~~~d~~kal-~lGAd~V~ig 256 (299)
T cd02809 201 NHG--GRQLDGAPATI----DALPEIVAAVGGRIEVLLDG---------GIRRGTDVLKAL-ALGADAVLIG 256 (299)
T ss_pred CCC--CCCCCCCcCHH----HHHHHHHHHhcCCCeEEEeC---------CCCCHHHHHHHH-HcCCCEEEEc
Confidence 22 2221 22111 1122222333 48988744 566655544333 3799999997
No 129
>PRK00915 2-isopropylmalate synthase; Validated
Probab=63.19 E-value=2.9e+02 Score=31.96 Aligned_cols=153 Identities=12% Similarity=0.117 Sum_probs=92.9
Q ss_pred CCChhcHHhHHHHHh--cCCEEEEec-cCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCC--c
Q 006783 447 GLTTKDLMDLEFVAS--HADMVGISF-VRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNP--L 521 (631)
Q Consensus 447 ~LTekD~~dl~f~~~--~~D~V~~SF-V~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~--D 521 (631)
.+|.+|+..|...+. ++|.|-++| ..++.|.+.++.+.... .+..|.+-.-+. .+.++..+.. +...+. -
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~--~~~~i~a~~r~~--~~did~a~~a-~~~~~~~~v 96 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTV--KNSTVCGLARAV--KKDIDAAAEA-LKPAEAPRI 96 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhC--CCCEEEEEccCC--HHHHHHHHHH-hhcCCCCEE
Confidence 467788877766554 799999988 67888988887765432 345555544221 2233333321 111123 3
Q ss_pred EEEEecCCcccc----cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccccc-
Q 006783 522 GVMIARGDLAVE----CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN- 593 (631)
Q Consensus 522 GImIaRGDL~ve----ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs- 593 (631)
.+++.=.|+-++ ...+++.+...+.+..|+++|.-|.+... ..+.-+...+.+++.+ .|+|.+.|.
T Consensus 97 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e------d~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 170 (513)
T PRK00915 97 HTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE------DATRTDLDFLCRVVEAAIDAGATTINIPD 170 (513)
T ss_pred EEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC------CCCCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 456666666433 34567777788899999999999876432 2222233334444443 599999987
Q ss_pred --CCccHHHHHHHHHHHHH
Q 006783 594 --KGKHVVEAVSTLDKILH 610 (631)
Q Consensus 594 --kG~ypveAV~~L~~Il~ 610 (631)
-+-.|-+.-+.+..+.+
T Consensus 171 TvG~~~P~~~~~~i~~l~~ 189 (513)
T PRK00915 171 TVGYTTPEEFGELIKTLRE 189 (513)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 45667776665555543
No 130
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=62.94 E-value=1.3e+02 Score=29.24 Aligned_cols=125 Identities=19% Similarity=0.142 Sum_probs=66.9
Q ss_pred HHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceE-EEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccc
Q 006783 456 LEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGV-VLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVE 533 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~I-iaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve 533 (631)
++.+.+ ++|+|.+......+.+.++.+.+++.|. .+.+ +..-.|+.-+. +++. .+.|.|.+.++--+..
T Consensus 70 ~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~-~~~v~~~~~~t~~e~~---~~~~-----~~~d~v~~~~~~~~~~ 140 (202)
T cd04726 70 AEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGK-EVQVDLIGVEDPEKRA---KLLK-----LGVDIVILHRGIDAQA 140 (202)
T ss_pred HHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCC-eEEEEEeCCCCHHHHH---HHHH-----CCCCEEEEcCcccccc
Confidence 455555 8999999887766677777777777652 2222 24556655443 2222 1579988865422222
Q ss_pred cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHH
Q 006783 534 CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVS 603 (631)
Q Consensus 534 ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~ 603 (631)
.|.+. ..+.+-..++..+.|+++.- |+ +..-+.++ ...|||++.+. +-+-|.++++
T Consensus 141 ~~~~~---~~~~i~~~~~~~~~~i~~~G---------GI-~~~~i~~~-~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 141 AGGWW---PEDDLKKVKKLLGVKVAVAG---------GI-TPDTLPEF-KKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred cCCCC---CHHHHHHHHhhcCCCEEEEC---------Cc-CHHHHHHH-HhcCCCEEEEeehhcCCCCHHHHHh
Confidence 21111 11222222222678887632 22 33222222 22599988876 3445666654
No 131
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=62.79 E-value=1.7e+02 Score=29.20 Aligned_cols=123 Identities=16% Similarity=0.173 Sum_probs=67.6
Q ss_pred hHHHHHh-cCCEEEEeccC-ChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCccc
Q 006783 455 DLEFVAS-HADMVGISFVR-DSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAV 532 (631)
Q Consensus 455 dl~f~~~-~~D~V~~SFV~-sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~v 532 (631)
.++.+.+ ++|+|.+.-.- ..++++.+.+.....| +.+++-+-|.+- +.++.. .++|.+.+..-|...
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g---~~~~v~v~~~~e---~~~~~~-----~g~~~i~~t~~~~~~ 154 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDDEQLKELYELARELG---MEVLVEVHDEEE---LERALA-----LGAKIIGINNRDLKT 154 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcC---CeEEEEECCHHH---HHHHHH-----cCCCEEEEeCCCccc
Confidence 4666666 79999864321 2244555444444333 334444443332 233322 257889887555432
Q ss_pred ccChhhHHHHHHHHHHHHHh--cCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHHH
Q 006783 533 ECGWERLADMQEEILSICGA--AHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVST 604 (631)
Q Consensus 533 eig~e~l~~~Qk~Ii~~c~a--agkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~~ 604 (631)
. + ..+ +.+...++. .++|++... |+=|..++.++..+ |+|+|++. +-..|.++++.
T Consensus 155 ~-~-~~~----~~~~~l~~~~~~~~pvia~g---------GI~s~edi~~~~~~-Ga~gvivGsai~~~~~p~~~~~~ 216 (217)
T cd00331 155 F-E-VDL----NTTERLAPLIPKDVILVSES---------GISTPEDVKRLAEA-GADAVLIGESLMRAPDPGAALRE 216 (217)
T ss_pred c-C-cCH----HHHHHHHHhCCCCCEEEEEc---------CCCCHHHHHHHHHc-CCCEEEECHHHcCCCCHHHHHHh
Confidence 2 1 112 222333344 468888643 66676666655544 99999987 56778777653
No 132
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=62.77 E-value=49 Score=36.15 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=43.4
Q ss_pred ChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHh
Q 006783 473 DSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGA 552 (631)
Q Consensus 473 sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~a 552 (631)
+.++...+.++.++.| +.+++-.=..++++-+.+. ++|.+=||-+|+.- -.++..+.+
T Consensus 74 ~~e~~~~L~~~~~~~G---i~~~stpfd~~svd~l~~~--------~v~~~KIaS~~~~n-----------~pLL~~~A~ 131 (329)
T TIGR03569 74 SEEDHRELKEYCESKG---IEFLSTPFDLESADFLEDL--------GVPRFKIPSGEITN-----------APLLKKIAR 131 (329)
T ss_pred CHHHHHHHHHHHHHhC---CcEEEEeCCHHHHHHHHhc--------CCCEEEECcccccC-----------HHHHHHHHh
Confidence 3445555555555544 3444444444444332221 34666666665532 234555666
Q ss_pred cCCCEEEEechhhhhhhCCCCChhhHHhhhhc
Q 006783 553 AHVPVIWATQVLESLVKFGVPTRAEITDVASA 584 (631)
Q Consensus 553 agkPvi~ATQvLESM~~~~~PtRAEvtDva~a 584 (631)
.|||||+.| |..|-+|+..++..
T Consensus 132 ~gkPvilSt---------Gmatl~Ei~~Av~~ 154 (329)
T TIGR03569 132 FGKPVILST---------GMATLEEIEAAVGV 154 (329)
T ss_pred cCCcEEEEC---------CCCCHHHHHHHHHH
Confidence 777777755 55566676665555
No 133
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=62.55 E-value=16 Score=41.12 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=36.4
Q ss_pred EecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHH
Q 006783 175 VTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKT 218 (631)
Q Consensus 175 vTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~ 218 (631)
+.++....+.+ +..|+++|.++.=|+++||+...|.++|+.||+
T Consensus 217 aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 217 AAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred EEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 34554333345 999999999999999999999999999999987
No 134
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=62.42 E-value=1e+02 Score=31.33 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=31.6
Q ss_pred HHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHH
Q 006783 550 CGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEA 601 (631)
Q Consensus 550 c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveA 601 (631)
++..+.|||.+. ++-+..++.++....|+|+||+. .|.+..+.
T Consensus 189 ~~~~~~pvia~G---------Gi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~ 235 (243)
T cd04731 189 SSAVNIPVIASG---------GAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAE 235 (243)
T ss_pred HhhCCCCEEEeC---------CCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHH
Confidence 445699999754 56677777777666799999997 67776554
No 135
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=62.11 E-value=38 Score=36.51 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=59.9
Q ss_pred ccCChhHHHHHHHHHHHhCCCCceEEEeecC----hhhhcchHHHHHHhhcCCCCcEEEE-ecCCcccccChhhHHHHHH
Q 006783 470 FVRDSCDIAMLRKELEKRKVQNLGVVLKIET----KSGFERLPHILLEAMKSSNPLGVMI-ARGDLAVECGWERLADMQE 544 (631)
Q Consensus 470 FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt----~~av~NL~eIl~~a~~~~~~DGImI-aRGDL~veig~e~l~~~Qk 544 (631)
+.++++-+.++-+.+.+.-..++.|.+||=. .+-...+-.++..+ |+|.|.| +|-- +-++..-+.-.+
T Consensus 112 Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~----Gvd~i~Vh~Rt~---~~~y~g~~~~~~ 184 (312)
T PRK10550 112 LLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQA----GATELVVHGRTK---EDGYRAEHINWQ 184 (312)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhc----CCCEEEECCCCC---ccCCCCCcccHH
Confidence 4555666666555555432135789999743 11122344445444 8899999 4421 112211000012
Q ss_pred HHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 545 EILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 545 ~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
.|-...++.++|||. +..+-|.+++.+.....|+|+||+.
T Consensus 185 ~i~~ik~~~~iPVi~---------nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 185 AIGEIRQRLTIPVIA---------NGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred HHHHHHhhcCCcEEE---------eCCcCCHHHHHHHHhccCCCEEEEc
Confidence 333344556899996 4456677666666655799999997
No 136
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=61.65 E-value=16 Score=30.17 Aligned_cols=32 Identities=31% Similarity=0.550 Sum_probs=29.0
Q ss_pred ccCCCCcEEEeCCeEEEEEEEEeCCEEEEEEEe
Q 006783 390 SVKPGEPIAFDDGKIWGLIQGASISEIVVSITH 422 (631)
Q Consensus 390 ~v~~Gd~I~iDDGkI~~~V~~v~~~~i~~~V~~ 422 (631)
..++||.|-|-+| +.+.|+++-++.+.+.+|.
T Consensus 3 ~a~vGdiIefk~g-~~G~V~kv~eNSVIVdIT~ 34 (57)
T PF09953_consen 3 KAKVGDIIEFKDG-FTGIVEKVYENSVIVDITI 34 (57)
T ss_pred ccccCcEEEEcCC-cEEEEEEEecCcEEEEEEe
Confidence 3579999999999 8999999999999999985
No 137
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=61.08 E-value=2.3e+02 Score=30.55 Aligned_cols=65 Identities=15% Similarity=0.004 Sum_probs=36.6
Q ss_pred CCcEEEEecCCccccc--ChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 519 NPLGVMIARGDLAVEC--GWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 519 ~~DGImIaRGDL~vei--g~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
++|-|=|..|...... +.... ......-...+...+||+..- ++-|.+++.++...-.+|.||+.
T Consensus 254 gvd~iev~~g~~~~~~~~~~~~~-~~~~~~~~ir~~~~iPVi~~G---------~i~t~~~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 254 GVDLIDVSSGGNSPAQKIPVGPG-YQVPFAERIRQEAGIPVIAVG---------LITDPEQAEAILESGRADLVALG 320 (336)
T ss_pred CCCEEEECCCCCCcccccCCCcc-ccHHHHHHHHhhCCCCEEEeC---------CCCCHHHHHHHHHcCCCCeehhh
Confidence 6788887666443221 11000 011222234455689998643 45566666666665569999997
No 138
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=60.98 E-value=1.2e+02 Score=30.58 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=37.8
Q ss_pred CCcEEEEecCCcccc---cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCcccccC
Q 006783 519 NPLGVMIARGDLAVE---CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLNK 594 (631)
Q Consensus 519 ~~DGImIaRGDL~ve---ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLsk 594 (631)
|+|.|.+. +...+ -|+ . .+.+-..++..++|||.+. ++-+..++..+....|+|+||+++
T Consensus 166 G~d~i~i~--~i~~~g~~~g~-~----~~~~~~i~~~~~ipvia~G---------Gi~s~~di~~~l~~~gadgV~vg~ 228 (232)
T TIGR03572 166 GAGEILLN--SIDRDGTMKGY-D----LELIKTVSDAVSIPVIALG---------GAGSLDDLVEVALEAGASAVAAAS 228 (232)
T ss_pred CCCEEEEe--CCCccCCcCCC-C----HHHHHHHHhhCCCCEEEEC---------CCCCHHHHHHHHHHcCCCEEEEeh
Confidence 68999885 22221 121 1 2333444556689999865 556777777655557999999863
No 139
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=60.43 E-value=22 Score=39.20 Aligned_cols=51 Identities=24% Similarity=0.447 Sum_probs=40.4
Q ss_pred CCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHH
Q 006783 169 QTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTS 219 (631)
Q Consensus 169 R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a 219 (631)
.+-.+-+-+|+.-.+.+ ++.|+++|+|+.=|..|||..+.-.+++++||+.
T Consensus 95 ~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~ 146 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKK 146 (352)
T ss_dssp SCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHh
Confidence 35566777787655667 9999999999999999999999988888888764
No 140
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=60.31 E-value=1.2e+02 Score=34.25 Aligned_cols=124 Identities=12% Similarity=0.053 Sum_probs=68.3
Q ss_pred HHhHHHHHh-cCCEEEEec-cCChhHHHHHHHHHHHhCCC---------CceEEEeecChhhhc----------------
Q 006783 453 LMDLEFVAS-HADMVGISF-VRDSCDIAMLRKELEKRKVQ---------NLGVVLKIETKSGFE---------------- 505 (631)
Q Consensus 453 ~~dl~f~~~-~~D~V~~SF-V~sa~Dv~~lr~~L~~~~~~---------~~~IiaKIEt~~av~---------------- 505 (631)
.+.++..++ ++.+|..|. ......+... +..|.. ...|++|+-+++-..
T Consensus 85 ~~~v~l~le~gV~~ve~sa~~~~~p~~~~~----r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~ 160 (418)
T cd04742 85 EGLVDLFLRHGVRVVEASAFMQLTPALVRY----RAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLA 160 (418)
T ss_pred HHHHHHHHHcCCCEEEeccccCCCcchhhH----HhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHH
Confidence 345677676 699888885 3333333222 222210 135999997765442
Q ss_pred ----chHHHHHHhhcCCC-CcEEEEecCCcccccChhhHHHHHHHHHHHHHhc--------CCCEEEEechhhhhhhCCC
Q 006783 506 ----RLPHILLEAMKSSN-PLGVMIARGDLAVECGWERLADMQEEILSICGAA--------HVPVIWATQVLESLVKFGV 572 (631)
Q Consensus 506 ----NL~eIl~~a~~~~~-~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aa--------gkPvi~ATQvLESM~~~~~ 572 (631)
+.+|-.... ..+ .|.|.+. .|=|-+.|-......--.|+..+.+. .+|||.|- |+
T Consensus 161 ~G~it~~eA~~A~--~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAG---------GI 228 (418)
T cd04742 161 EGKITEEQAELAR--RVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAG---------GI 228 (418)
T ss_pred cCCCCHHHHHHHH--hCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEEC---------CC
Confidence 223322111 223 4888887 77777666433333444455544433 58999886 55
Q ss_pred CChhhHHhhhhccccCccccc
Q 006783 573 PTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 573 PtRAEvtDva~a~gaD~vmLs 593 (631)
-|...+- .+.+.|||+|++.
T Consensus 229 ~tg~~va-AA~alGAd~V~~G 248 (418)
T cd04742 229 GTPEAAA-AAFALGADFIVTG 248 (418)
T ss_pred CCHHHHH-HHHHcCCcEEeec
Confidence 5654422 3344799998874
No 141
>TIGR03586 PseI pseudaminic acid synthase.
Probab=60.17 E-value=54 Score=35.76 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHh
Q 006783 473 DSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGA 552 (631)
Q Consensus 473 sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~a 552 (631)
+.++..++.++.++.| +.+++-.=..++++-++++ +++.+=||-||+.- -.++..+-+
T Consensus 75 ~~e~~~~L~~~~~~~G---i~~~stpfd~~svd~l~~~--------~v~~~KI~S~~~~n-----------~~LL~~va~ 132 (327)
T TIGR03586 75 PWEWHKELFERAKELG---LTIFSSPFDETAVDFLESL--------DVPAYKIASFEITD-----------LPLIRYVAK 132 (327)
T ss_pred CHHHHHHHHHHHHHhC---CcEEEccCCHHHHHHHHHc--------CCCEEEECCccccC-----------HHHHHHHHh
Confidence 3445555666665554 4454444333333222221 35677777666532 234555566
Q ss_pred cCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCcccc
Q 006783 553 AHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVML 592 (631)
Q Consensus 553 agkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmL 592 (631)
.|||||+.| |..|-+|+..++.. .|.+-++|
T Consensus 133 ~gkPvilst---------G~~t~~Ei~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 133 TGKPIIMST---------GIATLEEIQEAVEACREAGCKDLVL 166 (327)
T ss_pred cCCcEEEEC---------CCCCHHHHHHHHHHHHHCCCCcEEE
Confidence 788888755 55677776665554 35543444
No 142
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=60.14 E-value=19 Score=39.53 Aligned_cols=50 Identities=22% Similarity=0.423 Sum_probs=42.8
Q ss_pred CeEEEEecCCCCChHH-HHHHHHhC--CCEEEeecCCCChHHHHHHHHHHHHH
Q 006783 170 TNHIMVTVGQEASESE-ISDILKAG--ASIIRINCAHGNPSIWSEIIRRVKTS 219 (631)
Q Consensus 170 ~TkImvTlgp~aa~~~-i~~Li~aG--MdvaRINcAHg~~e~w~~mI~~vR~a 219 (631)
.-++++.+|..-.+.+ ++.|+++| .|+.=|..|||..+.-.++|+.||+.
T Consensus 95 ~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~ 147 (343)
T TIGR01305 95 LQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA 147 (343)
T ss_pred cceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh
Confidence 3457778887656666 99999996 99999999999999999999999973
No 143
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=60.03 E-value=1.6e+02 Score=31.20 Aligned_cols=150 Identities=7% Similarity=0.028 Sum_probs=89.7
Q ss_pred CChhcHHhHHHH--Hh-cCCEEEEec-cCChhHHHHHHHHHHHhC----CCCceEEEeecChhhhcchHHHHHHhhcCCC
Q 006783 448 LTTKDLMDLEFV--AS-HADMVGISF-VRDSCDIAMLRKELEKRK----VQNLGVVLKIETKSGFERLPHILLEAMKSSN 519 (631)
Q Consensus 448 LTekD~~dl~f~--~~-~~D~V~~SF-V~sa~Dv~~lr~~L~~~~----~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~ 519 (631)
+|.+++..|... .+ ++|.|-++| .-+++|.+.+++..+... .....+++-+....+++ ..+. + |
T Consensus 16 ~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~A~~-~----g 87 (280)
T cd07945 16 FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVD---WIKS-A----G 87 (280)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHHH---HHHH-C----C
Confidence 556777666654 35 899999964 489988888887665221 01355665555444433 2222 2 4
Q ss_pred CcEEEEe--cCCcccc----cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCC---ChhhHHhhhhc---ccc
Q 006783 520 PLGVMIA--RGDLAVE----CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVP---TRAEITDVASA---RRA 587 (631)
Q Consensus 520 ~DGImIa--RGDL~ve----ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~P---tRAEvtDva~a---~ga 587 (631)
++.|.|. =.|.-.+ ...++..+..++++..|+.+|..|.+.-.. .+.| +...+.+++.. .|+
T Consensus 88 ~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d------~~~~~r~~~~~~~~~~~~~~~~G~ 161 (280)
T cd07945 88 AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED------WSNGMRDSPDYVFQLVDFLSDLPI 161 (280)
T ss_pred CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe------CCCCCcCCHHHHHHHHHHHHHcCC
Confidence 5666553 2232222 234677777788899999999988764421 2333 23344444433 599
Q ss_pred Cccccc--C-CccHHHHHHHHHHHHHH
Q 006783 588 SCVMLN--K-GKHVVEAVSTLDKILHI 611 (631)
Q Consensus 588 D~vmLs--k-G~ypveAV~~L~~Il~r 611 (631)
|.+.|. . .-.|.+.-+.+..+.++
T Consensus 162 ~~i~l~DT~G~~~P~~v~~l~~~l~~~ 188 (280)
T cd07945 162 KRIMLPDTLGILSPFETYTYISDMVKR 188 (280)
T ss_pred CEEEecCCCCCCCHHHHHHHHHHHHhh
Confidence 999997 4 45687776666666543
No 144
>PLN02321 2-isopropylmalate synthase
Probab=59.34 E-value=1.8e+02 Score=34.78 Aligned_cols=155 Identities=14% Similarity=0.161 Sum_probs=92.5
Q ss_pred CCChhcHHhHHHHHh--cCCEEEEec-cCChhHHHHHHHHHHHhC--CCCceEEEeec-----ChhhhcchHHHHHHhhc
Q 006783 447 GLTTKDLMDLEFVAS--HADMVGISF-VRDSCDIAMLRKELEKRK--VQNLGVVLKIE-----TKSGFERLPHILLEAMK 516 (631)
Q Consensus 447 ~LTekD~~dl~f~~~--~~D~V~~SF-V~sa~Dv~~lr~~L~~~~--~~~~~IiaKIE-----t~~av~NL~eIl~~a~~ 516 (631)
.+|.+++-.|...+. ++|.|-++| .-|+.|.+.++.+.+... ...-..+++|- +.+.++ ..+.. +.
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId---~A~~a-l~ 179 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDID---AAWEA-VK 179 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHH---HHHHH-hc
Confidence 367788777765553 799999988 788889988887654321 11112334442 344443 22221 11
Q ss_pred CC--CCcEEEEecCCcccc----cChhhHHHHHHHHHHHHHhcCCC-EEEEechhhhhhhCCCCChhhHHhhh---hccc
Q 006783 517 SS--NPLGVMIARGDLAVE----CGWERLADMQEEILSICGAAHVP-VIWATQVLESLVKFGVPTRAEITDVA---SARR 586 (631)
Q Consensus 517 ~~--~~DGImIaRGDL~ve----ig~e~l~~~Qk~Ii~~c~aagkP-vi~ATQvLESM~~~~~PtRAEvtDva---~a~g 586 (631)
.. ..-.++++=.|+-++ +..+++.+.-++++..|+.+|.. |.+... ..+.-++..+..++ ...|
T Consensus 180 ~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~E------Da~rtd~d~l~~~~~~a~~aG 253 (632)
T PLN02321 180 HAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPE------DAGRSDPEFLYRILGEVIKAG 253 (632)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecc------cCCCCCHHHHHHHHHHHHHcC
Confidence 00 025677777777544 34578888889999999999985 555321 22222233333333 3369
Q ss_pred cCccccc---CCccHHHHHHHHHHHHHH
Q 006783 587 ASCVMLN---KGKHVVEAVSTLDKILHI 611 (631)
Q Consensus 587 aD~vmLs---kG~ypveAV~~L~~Il~r 611 (631)
+|.+.|. -+-.|-+.-+.+..+.++
T Consensus 254 a~~I~L~DTvG~~~P~~v~~li~~l~~~ 281 (632)
T PLN02321 254 ATTLNIPDTVGYTLPSEFGQLIADIKAN 281 (632)
T ss_pred CCEEEecccccCCCHHHHHHHHHHHHHh
Confidence 9999997 456677766666666543
No 145
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=59.01 E-value=1.1e+02 Score=32.57 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=56.8
Q ss_pred CChhHHHHHHHHHHHhCCCCceEEEeec-----ChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHH
Q 006783 472 RDSCDIAMLRKELEKRKVQNLGVVLKIE-----TKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEI 546 (631)
Q Consensus 472 ~sa~Dv~~lr~~L~~~~~~~~~IiaKIE-----t~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~I 546 (631)
++++-+.++-+.+.+. -++.|.+||- +..-...+-..+..+ |+|+|-|.-..- .-++.. +...+.+
T Consensus 114 ~~~~~~~ei~~~vr~~--~~~pv~vKir~g~~~~~~~~~~~a~~l~~~----G~d~i~vh~r~~--~~~~~~-~~~~~~i 184 (319)
T TIGR00737 114 RDPDLIGKIVKAVVDA--VDIPVTVKIRIGWDDAHINAVEAARIAEDA----GAQAVTLHGRTR--AQGYSG-EANWDII 184 (319)
T ss_pred CCHHHHHHHHHHHHhh--cCCCEEEEEEcccCCCcchHHHHHHHHHHh----CCCEEEEEcccc--cccCCC-chhHHHH
Confidence 3444444444444332 2477999983 221122233333333 789998742111 112211 1123344
Q ss_pred HHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 547 LSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 547 i~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
-...++.++|||. ..++-|..++.++....|+|+||+.
T Consensus 185 ~~i~~~~~ipvi~---------nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 185 ARVKQAVRIPVIG---------NGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred HHHHHcCCCcEEE---------eCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 4445567899997 4467777777777666799999997
No 146
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=58.90 E-value=1.1e+02 Score=32.46 Aligned_cols=135 Identities=22% Similarity=0.273 Sum_probs=65.8
Q ss_pred hcHHhHHHHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeec---ChhhhcchHHHHHHhhcCCCCcEEEEec
Q 006783 451 KDLMDLEFVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIE---TKSGFERLPHILLEAMKSSNPLGVMIAR 527 (631)
Q Consensus 451 kD~~dl~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIE---t~~av~NL~eIl~~a~~~~~~DGImIaR 527 (631)
.|..+++++.+.+|++.++- ++..+...++. +.+ ....|+.|== |.+-+.+.-+.+... -+.+.+++=|
T Consensus 99 ~d~~~~~~l~~~vd~~kIga-~~~~n~~LL~~-~a~---~gkPV~lk~G~~~s~~e~~~A~e~i~~~---Gn~~i~L~~r 170 (266)
T PRK13398 99 MDTRDVEEVADYADMLQIGS-RNMQNFELLKE-VGK---TKKPILLKRGMSATLEEWLYAAEYIMSE---GNENVVLCER 170 (266)
T ss_pred CChhhHHHHHHhCCEEEECc-ccccCHHHHHH-Hhc---CCCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCeEEEEEC
Confidence 45555666655567766652 23333322222 232 2345665532 223333333333322 1347788888
Q ss_pred CCcccccChhhHHHHHHHHHHHH-HhcCCCEEE-EechhhhhhhCCCCCh-hhHHhhhhccccCcccccCCccHHHH
Q 006783 528 GDLAVECGWERLADMQEEILSIC-GAAHVPVIW-ATQVLESLVKFGVPTR-AEITDVASARRASCVMLNKGKHVVEA 601 (631)
Q Consensus 528 GDL~veig~e~l~~~Qk~Ii~~c-~aagkPvi~-ATQvLESM~~~~~PtR-AEvtDva~a~gaD~vmLskG~ypveA 601 (631)
|--+.+ ++.+. .+.-..+... +..|.||++ +++-. +.... ..+.=+|.+.|||++|+-+=..|-+|
T Consensus 171 G~~t~~-~Y~~~-~vdl~~i~~lk~~~~~pV~~D~sHs~------G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd~a 239 (266)
T PRK13398 171 GIRTFE-TYTRN-TLDLAAVAVIKELSHLPIIVDPSHAT------GRRELVIPMAKAAIAAGADGLMIEVHPEPEKA 239 (266)
T ss_pred CCCCCC-CCCHH-HHHHHHHHHHHhccCCCEEEeCCCcc------cchhhHHHHHHHHHHcCCCEEEEeccCCcccc
Confidence 864443 23322 2222333333 445999999 67533 11000 12222555589999999654444443
No 147
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=58.84 E-value=18 Score=37.83 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=46.9
Q ss_pred eEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHH-hcCCCEEEEechhhhhhhCC
Q 006783 493 GVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICG-AAHVPVIWATQVLESLVKFG 571 (631)
Q Consensus 493 ~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~-aagkPvi~ATQvLESM~~~~ 571 (631)
.=+.||.-..- ++.++|+..+ ...|.|+|||+ |-.+++. +.-.+.+.+++ ..+.|||.
T Consensus 17 ~H~tliDP~k~-~~~~ei~~~~-~~~GTDaImIG-GS~gvt~------~~~~~~v~~ik~~~~lPvil------------ 75 (240)
T COG1646 17 RHLTLIDPDKT-EEADEIAEAA-AEAGTDAIMIG-GSDGVTE------ENVDNVVEAIKERTDLPVIL------------ 75 (240)
T ss_pred eEEEEeCcccc-cccHHHHHHH-HHcCCCEEEEC-CcccccH------HHHHHHHHHHHhhcCCCEEE------------
Confidence 34556654433 7777877665 34578999998 5554442 23445566667 89999997
Q ss_pred CCChhhHHhhhhc-cccCcccc
Q 006783 572 VPTRAEITDVASA-RRASCVML 592 (631)
Q Consensus 572 ~PtRAEvtDva~a-~gaD~vmL 592 (631)
.|+ +..+. -+||+++.
T Consensus 76 fP~-----~~~~is~~aDavff 92 (240)
T COG1646 76 FPG-----SPSGISPYADAVFF 92 (240)
T ss_pred ecC-----ChhccCccCCeEEE
Confidence 343 33344 37888765
No 148
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=58.79 E-value=29 Score=32.98 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=40.5
Q ss_pred hhhcchHHHHHHhhcCCCCcEEEE--ecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEe
Q 006783 502 SGFERLPHILLEAMKSSNPLGVMI--ARGDLAVECGWERLADMQEEILSICGAAHVPVIWAT 561 (631)
Q Consensus 502 ~av~NL~eIl~~a~~~~~~DGImI--aRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~AT 561 (631)
+.++++++.+... .+|-|+| |--|.....+.+++.+-.++++..|++.+.++|+.|
T Consensus 46 ~~l~~l~~~~~~~----~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 46 QMLVRFYEDVIAL----KPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred HHHHHHHHHHHhc----CCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 3444555544322 2465544 566888777889999999999999999999988865
No 149
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=58.44 E-value=93 Score=31.12 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=44.3
Q ss_pred CCcEEEEecCCccccc-----ChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhh--CCCCChhhHHhhhh-ccccCcc
Q 006783 519 NPLGVMIARGDLAVEC-----GWERLADMQEEILSICGAAHVPVIWATQVLESLVK--FGVPTRAEITDVAS-ARRASCV 590 (631)
Q Consensus 519 ~~DGImIaRGDL~vei-----g~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~--~~~PtRAEvtDva~-a~gaD~v 590 (631)
+++-|+|..=.+-..- ..+.+..+-+.+-..|++.++|+++.+|+=..-.. ...|+...+..-.. ...+|+|
T Consensus 123 ~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~v 202 (242)
T cd00984 123 GLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVV 202 (242)
T ss_pred CCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEE
Confidence 4566666543321111 12456667777888899999999999988643222 23555444333232 2579999
Q ss_pred cc
Q 006783 591 ML 592 (631)
Q Consensus 591 mL 592 (631)
|.
T Consensus 203 i~ 204 (242)
T cd00984 203 MF 204 (242)
T ss_pred EE
Confidence 84
No 150
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=58.27 E-value=51 Score=35.40 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=45.5
Q ss_pred hcCCCCCCCCeEEEEecCCCC-ChHH----HHHHHHhCCCEEEeecCCCC-----hHHHHHHHHHHHHHHhhcCCceEEE
Q 006783 161 LLGPLRHNQTNHIMVTVGQEA-SESE----ISDILKAGASIIRINCAHGN-----PSIWSEIIRRVKTSSQMLEMPCQIL 230 (631)
Q Consensus 161 l~G~~~~~R~TkImvTlgp~a-a~~~----i~~Li~aGMdvaRINcAHg~-----~e~w~~mI~~vR~a~~~~g~~~~Il 230 (631)
|||... ..+...-.|++... ..++ .+++.++|.+.+.|.++|+. ++.-.++++.|| +.+|..+.|+
T Consensus 118 llGg~~-~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir---~~~g~~~~l~ 193 (357)
T cd03316 118 LLGGKV-RDRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVR---EAVGPDVDLM 193 (357)
T ss_pred ccCCcc-CCceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHH---HhhCCCCEEE
Confidence 556531 23455556665533 2222 78888999999999999986 444444454444 5577778888
Q ss_pred ecCC
Q 006783 231 MDLA 234 (631)
Q Consensus 231 mDL~ 234 (631)
+|.-
T Consensus 194 vDaN 197 (357)
T cd03316 194 VDAN 197 (357)
T ss_pred EECC
Confidence 9873
No 151
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=58.22 E-value=35 Score=36.24 Aligned_cols=147 Identities=17% Similarity=0.109 Sum_probs=72.2
Q ss_pred cccCCCCCh-hcHHhHHHHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEee---cChhhhcchHH-HHHHhhc
Q 006783 442 NIHFEGLTT-KDLMDLEFVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKI---ETKSGFERLPH-ILLEAMK 516 (631)
Q Consensus 442 ~l~lp~LTe-kD~~dl~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKI---Et~~av~NL~e-Il~~a~~ 516 (631)
.+.+|-+|| .|.++++.+.+.+|++-++- ++......++. +.+ .+..|..|= -|++-..+.-| |.+..
T Consensus 79 ~~GlpvvTeV~~~~~~~~v~~~~DilQIgA-rn~rn~~LL~a-~g~---t~kpV~lKrG~~~t~~e~~~aaeyi~~~G-- 151 (264)
T PRK05198 79 TFGVPVLTDVHEPEQAAPVAEVVDVLQIPA-FLCRQTDLLVA-AAK---TGKVVNIKKGQFLAPWDMKNVVDKVREAG-- 151 (264)
T ss_pred HHCCceEEEeCCHHHHHHHHhhCcEEEECc-hhcchHHHHHH-Hhc---cCCeEEecCCCcCCHHHHHHHHHHHHHcC--
Confidence 455667776 46777888888899999984 33333333332 222 223444442 23333333333 44332
Q ss_pred CCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEE-Eechh---hhhhhCCCCChhhHHh---hhhccccCc
Q 006783 517 SSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIW-ATQVL---ESLVKFGVPTRAEITD---VASARRASC 589 (631)
Q Consensus 517 ~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~-ATQvL---ESM~~~~~PtRAEvtD---va~a~gaD~ 589 (631)
+.+-++.=||= ..|+.++..=..-+ -..+..+.|||+ +|+-+ -.+-....-.|.=|.. +|.|.|+|+
T Consensus 152 --n~~vilcERG~---tf~y~r~~~D~~~v-p~~k~~~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadG 225 (264)
T PRK05198 152 --NDKIILCERGT---SFGYNNLVVDMRGL-PIMRETGAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAG 225 (264)
T ss_pred --CCeEEEEeCCC---CcCCCCeeechhhh-HHHhhCCCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 34666678885 33654321111111 122246799997 12110 0000000111222333 555689999
Q ss_pred ccccCCccHHHH
Q 006783 590 VMLNKGKHVVEA 601 (631)
Q Consensus 590 vmLskG~ypveA 601 (631)
+|+=.=|.|-+|
T Consensus 226 l~iEvHpdP~~A 237 (264)
T PRK05198 226 LFIETHPDPDNA 237 (264)
T ss_pred EEEEeCCCcccc
Confidence 999655555444
No 152
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=57.98 E-value=1.3e+02 Score=31.27 Aligned_cols=140 Identities=16% Similarity=0.114 Sum_probs=75.4
Q ss_pred HhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhh----------------hcchHHHHHHhhc
Q 006783 454 MDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSG----------------FERLPHILLEAMK 516 (631)
Q Consensus 454 ~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~a----------------v~NL~eIl~~a~~ 516 (631)
++++.... +++.|.++.. .-++...+++..+..+.+. |+.-|..+.+ =.+..+++... .
T Consensus 87 ~d~~~l~~~G~~~vvigs~-~~~~~~~~~~~~~~~~~~~--i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~-~ 162 (258)
T PRK01033 87 EQAKKIFSLGVEKVSINTA-ALEDPDLITEAAERFGSQS--VVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEY-E 162 (258)
T ss_pred HHHHHHHHCCCCEEEEChH-HhcCHHHHHHHHHHhCCCc--EEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHH-H
Confidence 44555444 6888887642 1233344455454443222 3444443332 01123333322 1
Q ss_pred CCCCcEEEEe-cCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc--
Q 006783 517 SSNPLGVMIA-RGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN-- 593 (631)
Q Consensus 517 ~~~~DGImIa-RGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs-- 593 (631)
..|++.|++- +.-=+..-|+ .+. .+-..+++..+|||.+. +.-+.+++..+....|+|+|++.
T Consensus 163 ~~g~~~ii~~~i~~~G~~~G~-d~~----~i~~~~~~~~ipvIasG---------Gv~s~eD~~~l~~~~GvdgVivg~a 228 (258)
T PRK01033 163 ALGAGEILLNSIDRDGTMKGY-DLE----LLKSFRNALKIPLIALG---------GAGSLDDIVEAILNLGADAAAAGSL 228 (258)
T ss_pred HcCCCEEEEEccCCCCCcCCC-CHH----HHHHHHhhCCCCEEEeC---------CCCCHHHHHHHHHHCCCCEEEEcce
Confidence 2356877773 2211222332 222 22334566789999865 67777777766656799999987
Q ss_pred ---CCccHHHHHHHHHHHHHH
Q 006783 594 ---KGKHVVEAVSTLDKILHI 611 (631)
Q Consensus 594 ---kG~ypveAV~~L~~Il~r 611 (631)
+|.|+..+.+....+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~ 249 (258)
T PRK01033 229 FVFKGVYKAVLINYPNGDEKE 249 (258)
T ss_pred eeeCcccccccccccHHHHHH
Confidence 788877776666555543
No 153
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=57.76 E-value=17 Score=41.66 Aligned_cols=44 Identities=16% Similarity=0.480 Sum_probs=35.6
Q ss_pred ecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHH
Q 006783 176 TVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTS 219 (631)
Q Consensus 176 Tlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a 219 (631)
-+|....+.+ ++.|+++|+++.=||++||+.....++|+.||+.
T Consensus 235 avg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~ 279 (495)
T PTZ00314 235 AISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSN 279 (495)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhh
Confidence 5555333345 9999999999999999999888877888888874
No 154
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=57.38 E-value=1.5e+02 Score=30.65 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=30.8
Q ss_pred HHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHH
Q 006783 550 CGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVE 600 (631)
Q Consensus 550 c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypve 600 (631)
++..++|||.+. +.-+..++..+.+.-++|+||++ .|.+..+
T Consensus 195 ~~~~~ipvia~G---------Gi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~ 240 (254)
T TIGR00735 195 SEAVKIPVIASG---------GAGKPEHFYEAFTKGKADAALAASVFHYREITIG 240 (254)
T ss_pred HHhCCCCEEEeC---------CCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHH
Confidence 445689999865 56677777777666669999986 5777654
No 155
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=57.33 E-value=2.5e+02 Score=29.68 Aligned_cols=117 Identities=14% Similarity=0.196 Sum_probs=69.8
Q ss_pred HHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCccccc
Q 006783 456 LEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVEC 534 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~vei 534 (631)
++.+.+ ++|.|.++..- .++..++.+.+++.|.+ ...+..=.| -.+.+..|+..+ +|.+-.=+-.|+.
T Consensus 112 ~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~-~I~lv~PtT--~~eri~~i~~~a------~gFIY~vS~~GvT- 180 (263)
T CHL00200 112 IKKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIE-LILLIAPTS--SKSRIQKIARAA------PGCIYLVSTTGVT- 180 (263)
T ss_pred HHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCC-EEEEECCCC--CHHHHHHHHHhC------CCcEEEEcCCCCC-
Confidence 444555 79999998774 57788888888887743 223333344 456788888776 5444321122222
Q ss_pred Ch-hhHHHHHHHHHHHHHhc-CCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 535 GW-ERLADMQEEILSICGAA-HVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 535 g~-e~l~~~Qk~Ii~~c~aa-gkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
|. ..++.-.++++...+++ ++|+.+ --|+=+...+.. ....|||+|...
T Consensus 181 G~~~~~~~~~~~~i~~ir~~t~~Pi~v---------GFGI~~~e~~~~-~~~~GADGvVVG 231 (263)
T CHL00200 181 GLKTELDKKLKKLIETIKKMTNKPIIL---------GFGISTSEQIKQ-IKGWNINGIVIG 231 (263)
T ss_pred CCCccccHHHHHHHHHHHHhcCCCEEE---------ECCcCCHHHHHH-HHhcCCCEEEEC
Confidence 22 34445555666666654 889987 346666655444 222578888764
No 156
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=56.06 E-value=27 Score=30.70 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=29.3
Q ss_pred hhhhcccCCCCcEEEeCCeEEEEEEEEeCCEEEEEEE
Q 006783 385 SCLFDSVKPGEPIAFDDGKIWGLIQGASISEIVVSIT 421 (631)
Q Consensus 385 p~l~~~v~~Gd~I~iDDGkI~~~V~~v~~~~i~~~V~ 421 (631)
.++.+++++||.|..-.|-+ ++|.+++++.+.+++.
T Consensus 32 ~~m~~~L~~Gd~VvT~gGi~-G~V~~i~d~~v~vei~ 67 (84)
T TIGR00739 32 KKLIESLKKGDKVLTIGGII-GTVTKIAENTIVIELN 67 (84)
T ss_pred HHHHHhCCCCCEEEECCCeE-EEEEEEeCCEEEEEEC
Confidence 47889999999999877655 6777899998877763
No 157
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=55.61 E-value=2.2e+02 Score=33.80 Aligned_cols=147 Identities=14% Similarity=0.188 Sum_probs=92.0
Q ss_pred cHHhHHHHHh-cCCEEEEeccCChhHHHH---HHHHHHHhCCCCceEEEeecC--hhhhcchHHHHHHhhcCCCCcEEEE
Q 006783 452 DLMDLEFVAS-HADMVGISFVRDSCDIAM---LRKELEKRKVQNLGVVLKIET--KSGFERLPHILLEAMKSSNPLGVMI 525 (631)
Q Consensus 452 D~~dl~f~~~-~~D~V~~SFV~sa~Dv~~---lr~~L~~~~~~~~~IiaKIEt--~~av~NL~eIl~~a~~~~~~DGImI 525 (631)
-.+.+....+ ++|+|=+. |++.++.+. +++.+.+.| -++.+||-|== .-|+..++ .+|.|=|
T Consensus 43 tv~Qi~~l~~aGceiVRvt-v~~~~~a~~l~~I~~~l~~~G-~~iPLVADIHF~~~~A~~a~~----------~v~kiRI 110 (611)
T PRK02048 43 CVAQAKRIIDAGGEYVRLT-TQGVREAENLMNINIGLRSQG-YMVPLVADVHFNPKVADVAAQ----------YAEKVRI 110 (611)
T ss_pred HHHHHHHHHHcCCCEEEEc-CCCHHHHHhHHHHHHHHhhcC-CCCCEEEecCCCcHHHHHHHH----------hhCCEEE
Confidence 3334444444 79998776 455555554 555555556 46999999842 33322221 1499999
Q ss_pred ecCCcccc---------------cChhhHHHHHHHHHHHHHhcCCCEEEEec-------hhhhhhhCCCCChhhHHhhhh
Q 006783 526 ARGDLAVE---------------CGWERLADMQEEILSICGAAHVPVIWATQ-------VLESLVKFGVPTRAEITDVAS 583 (631)
Q Consensus 526 aRGDL~ve---------------ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQ-------vLESM~~~~~PtRAEvtDva~ 583 (631)
-||.++-. -.++++.+--+.++.+|+++|+|+=+-|+ +++. .+ +|..-+...|.
T Consensus 111 NPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~---yg-~tpe~mVeSAl 186 (611)
T PRK02048 111 NPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSR---YG-DTPEGMVESCM 186 (611)
T ss_pred CCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHH---hC-CChHHHHHHHH
Confidence 99999873 12356667777899999999999976653 3322 22 34433333222
Q ss_pred c-------cccCccccc-CCccHHHHHHHHHHHHHHHhh
Q 006783 584 A-------RRASCVMLN-KGKHVVEAVSTLDKILHINTA 614 (631)
Q Consensus 584 a-------~gaD~vmLs-kG~ypveAV~~L~~Il~r~e~ 614 (631)
- .|.+-+.+| |-..+...|...+.+..++.+
T Consensus 187 e~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~ 225 (611)
T PRK02048 187 EFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEA 225 (611)
T ss_pred HHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHh
Confidence 2 478888888 766677777777777776653
No 158
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=55.41 E-value=79 Score=32.58 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=59.2
Q ss_pred ccCChhHHHHHHHHHHHhCCCCceEEEeecCh--hhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHH
Q 006783 470 FVRDSCDIAMLRKELEKRKVQNLGVVLKIETK--SGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEIL 547 (631)
Q Consensus 470 FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~--~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii 547 (631)
..++++.+.++-+.+++. ++.|.+||=.- +-...+-..+..+ |+|+|-+--+.-+....+ +.+
T Consensus 121 Ll~~p~~l~eiv~avr~~---~~pVsvKir~g~~~~~~~la~~l~~a----G~d~ihv~~~~~g~~ad~--------~~I 185 (233)
T cd02911 121 LLKDPERLSEFIKALKET---GVPVSVKIRAGVDVDDEELARLIEKA----GADIIHVDAMDPGNHADL--------KKI 185 (233)
T ss_pred HcCCHHHHHHHHHHHHhc---CCCEEEEEcCCcCcCHHHHHHHHHHh----CCCEEEECcCCCCCCCcH--------HHH
Confidence 345566666666666542 57899999431 1112233444444 789876632222212222 223
Q ss_pred HHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCcccccCCccH
Q 006783 548 SICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLNKGKHV 598 (631)
Q Consensus 548 ~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLskG~yp 598 (631)
+.++ .++|||- ..++-|...+..... .|+|+||+..|..|
T Consensus 186 ~~i~-~~ipVIg---------nGgI~s~eda~~~l~-~GaD~VmiGR~~~p 225 (233)
T cd02911 186 RDIS-TELFIIG---------NNSVTTIESAKEMFS-YGADMVSVARASLP 225 (233)
T ss_pred HHhc-CCCEEEE---------ECCcCCHHHHHHHHH-cCCCEEEEcCCCCc
Confidence 3333 5799985 456667666555554 69999999987555
No 159
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=55.31 E-value=3.4e+02 Score=30.29 Aligned_cols=130 Identities=15% Similarity=0.237 Sum_probs=91.1
Q ss_pred cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeec--ChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhH
Q 006783 462 HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIE--TKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERL 539 (631)
Q Consensus 462 ~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIE--t~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l 539 (631)
++|+|=++ |.+.++.+.++.+-++. ++.+||-|- -..|++.+ . .|+|+|=|.||.++ ..
T Consensus 55 GceiVRva-v~~~~~a~al~~I~~~~---~iPlvADIHFd~~lAl~a~--------~-~G~~~iRINPGNig------~~ 115 (360)
T PRK00366 55 GCEIVRVA-VPDMEAAAALPEIKKQL---PVPLVADIHFDYRLALAAA--------E-AGADALRINPGNIG------KR 115 (360)
T ss_pred CCCEEEEc-cCCHHHHHhHHHHHHcC---CCCEEEecCCCHHHHHHHH--------H-hCCCEEEECCCCCC------ch
Confidence 79999888 67888888888765543 588999883 33343322 1 26899999999983 34
Q ss_pred HHHHHHHHHHHHhcCCCEEEEe-------chhhhhhhCCCCChhhHHhhhhc-------cccCccccc-CCccHHHHHHH
Q 006783 540 ADMQEEILSICGAAHVPVIWAT-------QVLESLVKFGVPTRAEITDVASA-------RRASCVMLN-KGKHVVEAVST 604 (631)
Q Consensus 540 ~~~Qk~Ii~~c~aagkPvi~AT-------QvLESM~~~~~PtRAEvtDva~a-------~gaD~vmLs-kG~ypveAV~~ 604 (631)
.+--++++..|+++|+|+=+-. ++|+ +.+.||..-+..-|.- .|.+=+.+| |-..+.++|+.
T Consensus 116 ~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~---~yg~~t~eamveSAl~~~~~le~~~f~~iviS~KsS~v~~~i~a 192 (360)
T PRK00366 116 DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLE---KYGEPTPEALVESALRHAKILEELGFDDIKISVKASDVQDLIAA 192 (360)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCccChHHHHH---HcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHH
Confidence 4566789999999999995543 3443 3355665444443332 488888888 88888888888
Q ss_pred HHHHHHHHh
Q 006783 605 LDKILHINT 613 (631)
Q Consensus 605 L~~Il~r~e 613 (631)
-..+.+++.
T Consensus 193 yrlla~~~d 201 (360)
T PRK00366 193 YRLLAKRCD 201 (360)
T ss_pred HHHHHhcCC
Confidence 776665543
No 160
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=55.17 E-value=2.8e+02 Score=29.34 Aligned_cols=131 Identities=20% Similarity=0.255 Sum_probs=75.9
Q ss_pred cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccCh-hhHH
Q 006783 462 HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGW-ERLA 540 (631)
Q Consensus 462 ~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~-e~l~ 540 (631)
++|.+.++=+- .++-..+++.+.+.| +.+|.-|=-...-+.+..|...+ .|.+=.-+=.|+. |. ..++
T Consensus 115 GvdGlIipDLP-~ee~~~~~~~~~~~g---l~~I~lv~p~t~~~Ri~~i~~~a------~gFiY~vs~~GvT-G~~~~~~ 183 (259)
T PF00290_consen 115 GVDGLIIPDLP-PEESEELREAAKKHG---LDLIPLVAPTTPEERIKKIAKQA------SGFIYLVSRMGVT-GSRTELP 183 (259)
T ss_dssp TEEEEEETTSB-GGGHHHHHHHHHHTT----EEEEEEETTS-HHHHHHHHHH-------SSEEEEESSSSSS-STTSSCH
T ss_pred CCCEEEEcCCC-hHHHHHHHHHHHHcC---CeEEEEECCCCCHHHHHHHHHhC------CcEEEeeccCCCC-CCcccch
Confidence 67777776443 345567777777766 44555554445566788888766 3444333334442 32 3445
Q ss_pred HHHHHHHHHHHhc-CCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc---------CCccHHHHHHHHHHHHH
Q 006783 541 DMQEEILSICGAA-HVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN---------KGKHVVEAVSTLDKILH 610 (631)
Q Consensus 541 ~~Qk~Ii~~c~aa-gkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs---------kG~ypveAV~~L~~Il~ 610 (631)
.-.++.+...+++ .+|+.+ --|+=|++.+..+. .+||+|... .+.-..+.++-+...++
T Consensus 184 ~~l~~~i~~ik~~~~~Pv~v---------GFGI~~~e~~~~~~--~~aDGvIVGSa~v~~i~~~~~~~~~~~~~~~~~~~ 252 (259)
T PF00290_consen 184 DELKEFIKRIKKHTDLPVAV---------GFGISTPEQAKKLA--AGADGVIVGSAFVKIIEENGDDAEKFLKELKEFVR 252 (259)
T ss_dssp HHHHHHHHHHHHTTSS-EEE---------ESSS-SHHHHHHHH--TTSSEEEESHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcceEE---------ecCCCCHHHHHHHH--ccCCEEEECHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 5555666666665 699987 34777887766655 789999874 35555555555555555
Q ss_pred HHhh
Q 006783 611 INTA 614 (631)
Q Consensus 611 r~e~ 614 (631)
++.+
T Consensus 253 ~lk~ 256 (259)
T PF00290_consen 253 ELKE 256 (259)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 161
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=55.15 E-value=2.1e+02 Score=29.53 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=78.7
Q ss_pred hHHHHHh-cCCEEEEeccC---------ChhHHHHHHHHHHHhCCCCceEEEe----e------cChhhhcchHHHHHHh
Q 006783 455 DLEFVAS-HADMVGISFVR---------DSCDIAMLRKELEKRKVQNLGVVLK----I------ETKSGFERLPHILLEA 514 (631)
Q Consensus 455 dl~f~~~-~~D~V~~SFV~---------sa~Dv~~lr~~L~~~~~~~~~IiaK----I------Et~~av~NL~eIl~~a 514 (631)
.++++.+ +.|+|-+.+-. +.+++.++++.+.+.+.-.+.+.+- . +...+++.+...+..+
T Consensus 15 ~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A 94 (279)
T cd00019 15 ALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIERC 94 (279)
T ss_pred HHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHH
Confidence 4667776 78998775321 4589999999998873223333221 1 2345677777777766
Q ss_pred hcCCCCcEEEEecCCcc---cccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCC---CCChhhHHhhhhccc-c
Q 006783 515 MKSSNPLGVMIARGDLA---VECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFG---VPTRAEITDVASARR-A 587 (631)
Q Consensus 515 ~~~~~~DGImIaRGDL~---veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~---~PtRAEvtDva~a~g-a 587 (631)
+.-|+..|.+-.|--. .+-.++.+...-+++...+++.|+.+.+ |.+-... ..|-.++-++....+ -
T Consensus 95 -~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~l-----En~~~~~~~~~~t~~~~~~li~~v~~~ 168 (279)
T cd00019 95 -EELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIAL-----ETMAGQGNEIGSSFEELKEIIDLIKEK 168 (279)
T ss_pred -HHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEE-----eCCCCCCCCCCCCHHHHHHHHHhcCCC
Confidence 3336778877666432 2223356667777777777788887664 4443332 345566666666655 4
Q ss_pred Ccc
Q 006783 588 SCV 590 (631)
Q Consensus 588 D~v 590 (631)
+.+
T Consensus 169 ~~~ 171 (279)
T cd00019 169 PRV 171 (279)
T ss_pred CCe
Confidence 433
No 162
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=54.94 E-value=76 Score=35.41 Aligned_cols=87 Identities=22% Similarity=0.195 Sum_probs=50.9
Q ss_pred CceEEEee---cChhhhcchHHHHHHhhcCCCCcEEEEecC--------CcccccChhhHHHHHHHHHHHHHhc-CCCEE
Q 006783 491 NLGVVLKI---ETKSGFERLPHILLEAMKSSNPLGVMIARG--------DLAVECGWERLADMQEEILSICGAA-HVPVI 558 (631)
Q Consensus 491 ~~~IiaKI---Et~~av~NL~eIl~~a~~~~~~DGImIaRG--------DL~veig~e~l~~~Qk~Ii~~c~aa-gkPvi 558 (631)
++.+|+-| .+.+....+-+.+..+ |+|+|=+-=+ +++..++. -++.-++|+..++++ .+||+
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~----GaD~iELNiSCPn~~~~r~~g~~~gq--~~e~~~~i~~~Vk~~~~iPv~ 186 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEET----GVDALEINFSCPHGMPERKMGAAVGQ--DCDLLEEVCGWINAKATVPVW 186 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhc----CCCEEEEECCCCCCCCcCccchhhcc--CHHHHHHHHHHHHHhhcCceE
Confidence 34566666 3555555555555443 4566655211 23444443 366777777777664 79999
Q ss_pred EEechhhhhhhCCCCChhhHHhhhhc---cccCccccc
Q 006783 559 WATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN 593 (631)
Q Consensus 559 ~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs 593 (631)
+ | -.|.-.++.+++.+ .|+|+|.+.
T Consensus 187 v---------K-LsPn~t~i~~ia~aa~~~Gadgi~li 214 (385)
T PLN02495 187 A---------K-MTPNITDITQPARVALKSGCEGVAAI 214 (385)
T ss_pred E---------E-eCCChhhHHHHHHHHHHhCCCEEEEe
Confidence 7 2 24655556666654 589988874
No 163
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=54.83 E-value=1.1e+02 Score=30.66 Aligned_cols=145 Identities=20% Similarity=0.238 Sum_probs=83.4
Q ss_pred CCCChhcHHhHH-HHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHH---HhhcCCCC
Q 006783 446 EGLTTKDLMDLE-FVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILL---EAMKSSNP 520 (631)
Q Consensus 446 p~LTekD~~dl~-f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~---~a~~~~~~ 520 (631)
|..|..|.+.+- .+.+ ++|.|.++ +..+..+++.+.. ..+.+-+=+=.+.|-...+..+. .+. +.|.
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~---~~~~v~~~~~fp~g~~~~~~k~~eve~A~-~~GA 83 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKG---SGVKVCTVIGFPLGATTTEVKVAEAREAI-ADGA 83 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCC---CCcEEEEEEecCCCCCcHHHHHHHHHHHH-HcCC
Confidence 777889988764 4666 68988876 6778877777753 23555555655555443333332 121 2267
Q ss_pred cEEEEecCCcccccCh---hhHHHHHHHHHHHHHhc-CCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccccc
Q 006783 521 LGVMIARGDLAVECGW---ERLADMQEEILSICGAA-HVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN 593 (631)
Q Consensus 521 DGImIaRGDL~veig~---e~l~~~Qk~Ii~~c~aa-gkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs 593 (631)
|+|-+- +-+|. ....++.++|.+.++++ |+|+.+ ++|. +.=+..++..++.. .|||.|=.+
T Consensus 84 devdvv-----~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkv---I~e~----~~l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 84 DEIDMV-----INIGALKSGDYEAVYEEIAAVVEACGGAPLKV---ILET----GLLTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred CEEEEe-----ecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 877663 12221 12233444444444443 688754 2322 11134566555544 699999999
Q ss_pred CCccH----HHHHHHHHHHHH
Q 006783 594 KGKHV----VEAVSTLDKILH 610 (631)
Q Consensus 594 kG~yp----veAV~~L~~Il~ 610 (631)
.|..+ ++.|+.|.++++
T Consensus 152 TG~~~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 152 TGFGPGGATVEDVKLMKEAVG 172 (203)
T ss_pred CCCCCCCCCHHHHHHHHHHhC
Confidence 77752 467777777776
No 164
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=54.76 E-value=1.3e+02 Score=31.56 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=39.2
Q ss_pred CceEEEee--cC--hhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEE
Q 006783 491 NLGVVLKI--ET--KSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 491 ~~~IiaKI--Et--~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
++.++.+- .. .-|++++-+-++.+ |+||++|- ||. + +-.++....|+++|...|+
T Consensus 89 ~~p~vlm~Y~N~i~~~G~e~f~~~~~~a----GvdGviip--DLp----~----ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 89 TIPIVLMTYYNPIFQYGVERFAADAAEA----GVDGLIIP--DLP----P----EEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred CCCEEEEecccHHhhcCHHHHHHHHHHc----CCcEEEEC--CCC----H----HHHHHHHHHHHHcCCcEEE
Confidence 45555554 32 34888888888877 89999994 554 3 3456778899999977775
No 165
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=54.59 E-value=58 Score=35.03 Aligned_cols=145 Identities=18% Similarity=0.104 Sum_probs=72.7
Q ss_pred cccCCCCCh-hcHHhHHHHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEe---ecChhhhcchHHHHHHhhcC
Q 006783 442 NIHFEGLTT-KDLMDLEFVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLK---IETKSGFERLPHILLEAMKS 517 (631)
Q Consensus 442 ~l~lp~LTe-kD~~dl~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaK---IEt~~av~NL~eIl~~a~~~ 517 (631)
.+.+|.+|| .|.++++.+.+.+|++-++- ++......|+. +.+ .+-.|..| --|++-..+.-|=+... +
T Consensus 85 ~~glpvvTeV~~~~q~~~vae~~DilQIgA-r~~rqtdLL~a-~~~---tgkpV~lKkGq~~t~~e~~~aaeki~~~-G- 157 (290)
T PLN03033 85 AYDLPIVTDVHESSQCEAVGKVADIIQIPA-FLCRQTDLLVA-AAK---TGKIINIKKGQFCAPSVMRNSAEKVRLA-G- 157 (290)
T ss_pred HHCCceEEeeCCHHHHHHHHhhCcEEeeCc-HHHHHHHHHHH-HHc---cCCeEEeCCCCCCCHHHHHHHHHHHHHc-C-
Confidence 456777777 57788888889999999973 34444433333 222 22334444 23333344444433333 1
Q ss_pred CCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEE-Eechh--------hhhhhCCCCChhhHHh---hhhcc
Q 006783 518 SNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIW-ATQVL--------ESLVKFGVPTRAEITD---VASAR 585 (631)
Q Consensus 518 ~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~-ATQvL--------ESM~~~~~PtRAEvtD---va~a~ 585 (631)
+.+-++.=||= ..|+-++..=..-+... +..|.|||+ +|+-+ ...-....-.|.=|.. +|.|.
T Consensus 158 -N~~viLcERG~---tFgy~~lv~D~r~ip~m-k~~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~ 232 (290)
T PLN03033 158 -NPNVMVCERGT---MFGYNDLIVDPRNLEWM-REANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAV 232 (290)
T ss_pred -CCcEEEEeCCC---CcCCCCcccchhhhHHH-HhcCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 33455557884 34664332212212111 347999997 23210 0011111222333444 44558
Q ss_pred ccCcccccCCccH
Q 006783 586 RASCVMLNKGKHV 598 (631)
Q Consensus 586 gaD~vmLskG~yp 598 (631)
|+|++|+=.=+.|
T Consensus 233 GaDGlfiEvHpdP 245 (290)
T PLN03033 233 GVDGIFMEVHDDP 245 (290)
T ss_pred CCCEEEEEecCCc
Confidence 9999998533333
No 166
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=53.94 E-value=2.2e+02 Score=32.79 Aligned_cols=149 Identities=12% Similarity=0.156 Sum_probs=89.9
Q ss_pred CCChhcHHhHHHHHh--cCCEEEEec-cCChhHHHHHHHHHHHhCCCCceEEEeec-ChhhhcchHHHHHHhhcCCCCcE
Q 006783 447 GLTTKDLMDLEFVAS--HADMVGISF-VRDSCDIAMLRKELEKRKVQNLGVVLKIE-TKSGFERLPHILLEAMKSSNPLG 522 (631)
Q Consensus 447 ~LTekD~~dl~f~~~--~~D~V~~SF-V~sa~Dv~~lr~~L~~~~~~~~~IiaKIE-t~~av~NL~eIl~~a~~~~~~DG 522 (631)
.+|.+|+..|...+. ++|+|-++| +.++.|.+.++.+.... .+..|.+-.- +...+ +.-+.. +...+.+.
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~--~~~~i~al~r~~~~di---d~a~~a-l~~~~~~~ 92 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIARTV--KNPRVCGLARCVEKDI---DAAAEA-LKPAEKFR 92 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhC--CCCEEEEEcCCCHHhH---HHHHHh-ccccCCCE
Confidence 467788887776664 799999987 46788888887765433 2344444433 23333 322221 11112333
Q ss_pred --EEEecCCcccc----cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhh---HHhhhhc---cccCcc
Q 006783 523 --VMIARGDLAVE----CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAE---ITDVASA---RRASCV 590 (631)
Q Consensus 523 --ImIaRGDL~ve----ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAE---vtDva~a---~gaD~v 590 (631)
+++.=.|+-++ ...+++.+...+.+..|+.+|.-|.+... ..+|++ +.+++.+ .|+|.+
T Consensus 93 v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~E---------d~~r~d~~~l~~~~~~~~~~Ga~~i 163 (494)
T TIGR00973 93 IHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCE---------DAGRTEIPFLARIVEAAINAGATTI 163 (494)
T ss_pred EEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcC---------CCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 44454555544 23467777788999999999998887532 344443 3333333 699999
Q ss_pred ccc---CCccHHHHHHHHHHHHH
Q 006783 591 MLN---KGKHVVEAVSTLDKILH 610 (631)
Q Consensus 591 mLs---kG~ypveAV~~L~~Il~ 610 (631)
.|. -+-.|-+.-+....+.+
T Consensus 164 ~l~DTvG~~~P~~~~~~i~~l~~ 186 (494)
T TIGR00973 164 NIPDTVGYALPAEYGNLIKGLRE 186 (494)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHH
Confidence 997 45667666555555544
No 167
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=53.82 E-value=3.3e+02 Score=29.72 Aligned_cols=143 Identities=13% Similarity=0.158 Sum_probs=81.4
Q ss_pred CChhcHHhHHHHHh--cCCEEEE---------ecc-C--ChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHH
Q 006783 448 LTTKDLMDLEFVAS--HADMVGI---------SFV-R--DSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLE 513 (631)
Q Consensus 448 LTekD~~dl~f~~~--~~D~V~~---------SFV-~--sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~ 513 (631)
+|.+++..+-..+. ++|+|-+ ||. . ...+.+.++...... .+..+.+.+- -+.-+++++-..
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~--~~~~~~~ll~--pg~~~~~dl~~a 97 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV--KQAKIAALLL--PGIGTVDDLKMA 97 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC--CCCEEEEEec--cCcccHHHHHHH
Confidence 56677777766554 7999988 343 1 122455555544433 2344544332 223344444322
Q ss_pred hhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCcc
Q 006783 514 AMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCV 590 (631)
Q Consensus 514 a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~v 590 (631)
. ..|+|.|-|+ . ...+. ..-++.+..+++.|.-|.+. +. ..+..+.+++.+.+.. .|+|++
T Consensus 98 ~--~~gvd~iri~-----~--~~~e~-~~~~~~i~~ak~~G~~v~~~--l~----~a~~~~~e~l~~~a~~~~~~Ga~~i 161 (337)
T PRK08195 98 Y--DAGVRVVRVA-----T--HCTEA-DVSEQHIGLARELGMDTVGF--LM----MSHMAPPEKLAEQAKLMESYGAQCV 161 (337)
T ss_pred H--HcCCCEEEEE-----E--ecchH-HHHHHHHHHHHHCCCeEEEE--EE----eccCCCHHHHHHHHHHHHhCCCCEE
Confidence 2 2367888875 1 22222 24578889999999887653 11 2356677777766544 699999
Q ss_pred ccc--CCccHHHHHHHHHHHHH
Q 006783 591 MLN--KGKHVVEAVSTLDKILH 610 (631)
Q Consensus 591 mLs--kG~ypveAV~~L~~Il~ 610 (631)
.+. .|-.--+.|..+-+.++
T Consensus 162 ~i~DT~G~~~P~~v~~~v~~l~ 183 (337)
T PRK08195 162 YVVDSAGALLPEDVRDRVRALR 183 (337)
T ss_pred EeCCCCCCCCHHHHHHHHHHHH
Confidence 996 66554444444433333
No 168
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=53.66 E-value=2.7e+02 Score=29.09 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=46.2
Q ss_pred EEEeecCh---hhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhC
Q 006783 494 VVLKIETK---SGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKF 570 (631)
Q Consensus 494 IiaKIEt~---~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~ 570 (631)
+.-...++ -|++++-+-+..+ |+|||+|- ||. ++ -.++++..|+++|...|++- +
T Consensus 91 v~m~Y~Npi~~~G~e~f~~~~~~a----Gvdgviip--Dlp----~e----e~~~~~~~~~~~gl~~i~lv--------~ 148 (256)
T TIGR00262 91 GLLTYYNLIFRKGVEEFYAKCKEV----GVDGVLVA--DLP----LE----ESGDLVEAAKKHGVKPIFLV--------A 148 (256)
T ss_pred EEEEeccHHhhhhHHHHHHHHHHc----CCCEEEEC--CCC----hH----HHHHHHHHHHHCCCcEEEEE--------C
Confidence 34444554 4777766666666 89999996 553 33 34678899999998876432 3
Q ss_pred CCCChhhHHhhhhc-cccCcccc
Q 006783 571 GVPTRAEITDVASA-RRASCVML 592 (631)
Q Consensus 571 ~~PtRAEvtDva~a-~gaD~vmL 592 (631)
|..+...+.-++.. .|...+|-
T Consensus 149 P~T~~eri~~i~~~~~gfiy~vs 171 (256)
T TIGR00262 149 PNADDERLKQIAEKSQGFVYLVS 171 (256)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEE
Confidence 55554444333333 45554443
No 169
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=53.34 E-value=3.1e+02 Score=30.59 Aligned_cols=138 Identities=18% Similarity=0.168 Sum_probs=74.7
Q ss_pred hHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEE-eecChhhhcchHHHHHHhhcCCCCcEEEEecCCccc
Q 006783 455 DLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVL-KIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAV 532 (631)
Q Consensus 455 dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~Iia-KIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~v 532 (631)
+++.+.+ ++|+|.+..-.+...+..+.+..++.| +.++. -+-+...++.+.++.. .|+|.|-+.+|--+-
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G---~~~~~g~~s~~t~~e~~~~a~~-----~GaD~I~~~pg~~~~ 144 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYG---VRLMADLINVPDPVKRAVELEE-----LGVDYINVHVGIDQQ 144 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcC---CEEEEEecCCCCHHHHHHHHHh-----cCCCEEEEEeccchh
Confidence 5666676 799998753333334666666666665 23332 1221122333333332 257999888764221
Q ss_pred ccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHHHHHHH
Q 006783 533 ECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVSTLDKI 608 (631)
Q Consensus 533 eig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~~L~~I 608 (631)
..+... .+.+-+..+..+.|+++.. |+ +.+.+.. +...|+|++.+. +-+-|.++++.+.++
T Consensus 145 ~~~~~~----~~~l~~l~~~~~iPI~a~G---------GI-~~~n~~~-~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~ 209 (430)
T PRK07028 145 MLGKDP----LELLKEVSEEVSIPIAVAG---------GL-DAETAAK-AVAAGADIVIVGGNIIKSADVTEAARKIREA 209 (430)
T ss_pred hcCCCh----HHHHHHHHhhCCCcEEEEC---------CC-CHHHHHH-HHHcCCCEEEEChHHcCCCCHHHHHHHHHHH
Confidence 222111 1222222234568987744 33 3333332 233689988876 456788999988888
Q ss_pred HHHHhhc
Q 006783 609 LHINTAQ 615 (631)
Q Consensus 609 l~r~e~~ 615 (631)
+++.--|
T Consensus 210 i~~~~~~ 216 (430)
T PRK07028 210 IDSGKPV 216 (430)
T ss_pred HhccCCc
Confidence 7764333
No 170
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=53.30 E-value=3.3e+02 Score=29.63 Aligned_cols=128 Identities=17% Similarity=0.190 Sum_probs=65.1
Q ss_pred cCCEEEEec----------cCChhHHHHHHHHHHHhC-----CCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEe
Q 006783 462 HADMVGISF----------VRDSCDIAMLRKELEKRK-----VQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIA 526 (631)
Q Consensus 462 ~~D~V~~SF----------V~sa~Dv~~lr~~L~~~~-----~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIa 526 (631)
.+|+|-+.+ .+.++.+.++-+.+.+.- ...+.|++|+=---.-+++.+|+..+. ..|.|||.+.
T Consensus 166 ~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~-~~GadGi~l~ 244 (335)
T TIGR01036 166 LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLV-ELGIDGVIAT 244 (335)
T ss_pred hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHH-HhCCcEEEEE
Confidence 589988854 233444444433333211 013789999953322234555555442 2378999862
Q ss_pred -----cC-----CcccccC----hhhHHHHHHHHHHHHHhc--CCCEEEEechhhhhhhCCCCChhhHHhhhhccccCcc
Q 006783 527 -----RG-----DLAVECG----WERLADMQEEILSICGAA--HVPVIWATQVLESLVKFGVPTRAEITDVASARRASCV 590 (631)
Q Consensus 527 -----RG-----DL~veig----~e~l~~~Qk~Ii~~c~aa--gkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~v 590 (631)
+- .++.+.| ..--+.+.+.+-...++. ..|+|-+.- +=|-.++-+..+ .|||+|
T Consensus 245 NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GG---------I~~~~da~e~l~-aGA~~V 314 (335)
T TIGR01036 245 NTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGG---------ISSAQDALEKIR-AGASLL 314 (335)
T ss_pred CCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECC---------CCCHHHHHHHHH-cCCcHH
Confidence 10 0011122 233344444444444444 478886653 334333322222 599999
Q ss_pred ccc-----CCccHHH
Q 006783 591 MLN-----KGKHVVE 600 (631)
Q Consensus 591 mLs-----kG~ypve 600 (631)
++. .||+.++
T Consensus 315 qv~ta~~~~Gp~~~~ 329 (335)
T TIGR01036 315 QIYSGFIYWGPPLVK 329 (335)
T ss_pred HhhHHHHHhCchHHH
Confidence 997 4776543
No 171
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=52.96 E-value=1.7e+02 Score=30.28 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=59.0
Q ss_pred hHHHHHh-cCCEEEEe------ccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEec
Q 006783 455 DLEFVAS-HADMVGIS------FVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIAR 527 (631)
Q Consensus 455 dl~f~~~-~~D~V~~S------FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaR 527 (631)
.++|.++ ++|.|.+. +.-|.++-.++-+...+....++.||+-+=+..--+.++. +..+ ...|.||||+.+
T Consensus 23 ~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~-a~~a-~~~Gad~v~v~p 100 (281)
T cd00408 23 LVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIEL-ARHA-EEAGADGVLVVP 100 (281)
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHH-HHHH-HHcCCCEEEECC
Confidence 4566665 68887752 3344555555444444333346788888744222222222 1121 233789999977
Q ss_pred CCcccccChhhHHHHHHHHHHHHHhcCCCEEE-----------Eechhhhhhh
Q 006783 528 GDLAVECGWERLADMQEEILSICGAAHVPVIW-----------ATQVLESLVK 569 (631)
Q Consensus 528 GDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~-----------ATQvLESM~~ 569 (631)
-...- .+-+.+...-+.| |++.+.|+++ ..+++..|++
T Consensus 101 P~y~~-~~~~~~~~~~~~i---a~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 101 PYYNK-PSQEGIVAHFKAV---ADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred CcCCC-CCHHHHHHHHHHH---HhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 65443 3344554444444 4456888875 2456666665
No 172
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=52.82 E-value=1e+02 Score=32.59 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=46.8
Q ss_pred CCcEEEEecCCc--ccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhh---hccccCccccc
Q 006783 519 NPLGVMIARGDL--AVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVA---SARRASCVMLN 593 (631)
Q Consensus 519 ~~DGImIaRGDL--~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva---~a~gaD~vmLs 593 (631)
|++||+++ |-- ...+..++--.+.+..+..|. -.+|||..+ +.++-.|.-..+ ...|+|++|+.
T Consensus 38 Gv~gi~v~-GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagv---------g~~~t~~ai~~a~~a~~~Gad~v~v~ 106 (293)
T PRK04147 38 GIDGLYVG-GSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQV---------GSVNTAEAQELAKYATELGYDAISAV 106 (293)
T ss_pred CCCEEEEC-CCccccccCCHHHHHHHHHHHHHHhC-CCCCEEecC---------CCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 78999985 211 122333444444455555443 347888643 344545544433 33699999998
Q ss_pred C----CccHHHHHHHHHHHHHH
Q 006783 594 K----GKHVVEAVSTLDKILHI 611 (631)
Q Consensus 594 k----G~ypveAV~~L~~Il~r 611 (631)
- .+-.-+-++....|+..
T Consensus 107 ~P~y~~~~~~~l~~~f~~va~a 128 (293)
T PRK04147 107 TPFYYPFSFEEICDYYREIIDS 128 (293)
T ss_pred CCcCCCCCHHHHHHHHHHHHHh
Confidence 3 23345667777777765
No 173
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=52.31 E-value=2.9e+02 Score=28.55 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=79.3
Q ss_pred HHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChh
Q 006783 458 FVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWE 537 (631)
Q Consensus 458 f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e 537 (631)
|+..++|+|.+=+= +..++.+.-+.+++.| -..+|..+=+| -++.+..++... |.|+| ++|+-|+.
T Consensus 81 ~~~~gad~I~~H~E-a~~~~~~~l~~Ir~~g-~k~GlalnP~T--~~~~i~~~l~~v------D~Vlv----MtV~PGf~ 146 (223)
T PRK08745 81 FADAGATTISFHPE-ASRHVHRTIQLIKSHG-CQAGLVLNPAT--PVDILDWVLPEL------DLVLV----MSVNPGFG 146 (223)
T ss_pred HHHhCCCEEEEccc-CcccHHHHHHHHHHCC-CceeEEeCCCC--CHHHHHHHHhhc------CEEEE----EEECCCCC
Confidence 45558999988654 3456777777888887 56899999999 577788888754 99999 56666661
Q ss_pred ---hHHHHHH---HHHHHHHhcCCCE-EEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHHHHH
Q 006783 538 ---RLADMQE---EILSICGAAHVPV-IWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVSTLD 606 (631)
Q Consensus 538 ---~l~~~Qk---~Ii~~c~aagkPv-i~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~~L~ 606 (631)
-++..-+ ++-....+.+..+ |..- |--+..-+. .....|||.+... +.+-|.++++.|.
T Consensus 147 GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVD---------GGI~~eti~-~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr 216 (223)
T PRK08745 147 GQAFIPSALDKLRAIRKKIDALGKPIRLEID---------GGVKADNIG-AIAAAGADTFVAGSAIFNAPDYAQVIAQMR 216 (223)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCCeeEEEE---------CCCCHHHHH-HHHHcCCCEEEEChhhhCCCCHHHHHHHHH
Confidence 1122222 2222333445443 2211 222322222 3333688888775 3445888888887
Q ss_pred HHHH
Q 006783 607 KILH 610 (631)
Q Consensus 607 ~Il~ 610 (631)
+.+.
T Consensus 217 ~~~~ 220 (223)
T PRK08745 217 AAVA 220 (223)
T ss_pred HHHH
Confidence 7653
No 174
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=52.01 E-value=50 Score=34.25 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=44.9
Q ss_pred hcHHhH-HHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeec--C-hhhhcchHHHHHHhhcCCCCcEEEE
Q 006783 451 KDLMDL-EFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIE--T-KSGFERLPHILLEAMKSSNPLGVMI 525 (631)
Q Consensus 451 kD~~dl-~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIE--t-~~av~NL~eIl~~a~~~~~~DGImI 525 (631)
+.+... .-+.+ ++|||.+||.. +++.+++..+... -.+..+.-|= | .++++|+++++.. |.+|+.+
T Consensus 156 ~~~~~~~~~a~~~GADyikt~~~~---~~~~l~~~~~~~~-iPVva~GGi~~~~~~~~~~~i~~~~~a-----Ga~Gia~ 226 (258)
T TIGR01949 156 ELVAHAARLGAELGADIVKTPYTG---DIDSFRDVVKGCP-APVVVAGGPKTNSDREFLQMIKDAMEA-----GAAGVAV 226 (258)
T ss_pred HHHHHHHHHHHHHCCCEEeccCCC---CHHHHHHHHHhCC-CcEEEecCCCCCCHHHHHHHHHHHHHc-----CCcEEeh
Confidence 334442 34444 79999999864 5666666554322 1233333443 3 4567889888764 6799999
Q ss_pred ecCCcccc
Q 006783 526 ARGDLAVE 533 (631)
Q Consensus 526 aRGDL~ve 533 (631)
+|.=+.-+
T Consensus 227 g~~i~~~~ 234 (258)
T TIGR01949 227 GRNIFQHD 234 (258)
T ss_pred hhHhhcCC
Confidence 87755443
No 175
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.79 E-value=1.1e+02 Score=28.59 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=40.5
Q ss_pred hhcchHHHHHHhhcCCCCcEEEEecC--CcccccChhhHHHHHHHHHHHHHh--cCCCEEEEe
Q 006783 503 GFERLPHILLEAMKSSNPLGVMIARG--DLAVECGWERLADMQEEILSICGA--AHVPVIWAT 561 (631)
Q Consensus 503 av~NL~eIl~~a~~~~~~DGImIaRG--DL~veig~e~l~~~Qk~Ii~~c~a--agkPvi~AT 561 (631)
..+++++++ .. .+|-|+|.=| |+.-..+.++...-.++++..+++ .+.+|+|.|
T Consensus 37 ~~~~l~~~~-~~----~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~ 94 (169)
T cd01828 37 LLARLDEDV-AL----QPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQS 94 (169)
T ss_pred HHHHHHHHh-cc----CCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 345666665 22 3588877666 887667778888888999999988 789999976
No 176
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=51.78 E-value=49 Score=36.32 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHhcCCCEE----EEechhhhhhhCCCCChhh--HHhhhhc-----cccCccccc
Q 006783 538 RLADMQEEILSICGAAHVPVI----WATQVLESLVKFGVPTRAE--ITDVASA-----RRASCVMLN 593 (631)
Q Consensus 538 ~l~~~Qk~Ii~~c~aagkPvi----~ATQvLESM~~~~~PtRAE--vtDva~a-----~gaD~vmLs 593 (631)
.|+.---++|..|++.|+-|| +.+.-|||.+.... -++. -||++.- .-+||+|-|
T Consensus 233 ~v~~eta~~i~~~k~~GgRIiaVGTTs~R~LEsa~~~~~-~~~~sg~T~IFI~PGy~~~~vD~LiTN 298 (348)
T COG0809 233 EVPQETADAINAAKARGGRIIAVGTTSVRTLESAAREAG-LKAFSGWTDIFIYPGYRFKVVDALITN 298 (348)
T ss_pred ecCHHHHHHHHHHHHcCCeEEEEcchhHHHHHHHhcccC-cCcCcCcccEEEcCCCcceeeeeeeec
Confidence 555666688999999988887 34566888887654 2221 2555544 348888877
No 177
>PLN02591 tryptophan synthase
Probab=51.63 E-value=3.1e+02 Score=28.79 Aligned_cols=136 Identities=15% Similarity=0.167 Sum_probs=75.1
Q ss_pred HHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccC
Q 006783 457 EFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECG 535 (631)
Q Consensus 457 ~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig 535 (631)
+.+.+ ++|.+.++=. ..++...+++.+++.| +..|.-+=---.-+.+..|...+ +| .--+|++ .|+.=.
T Consensus 100 ~~~~~aGv~GviipDL-P~ee~~~~~~~~~~~g---l~~I~lv~Ptt~~~ri~~ia~~~---~g-FIY~Vs~--~GvTG~ 169 (250)
T PLN02591 100 ATIKEAGVHGLVVPDL-PLEETEALRAEAAKNG---IELVLLTTPTTPTERMKAIAEAS---EG-FVYLVSS--TGVTGA 169 (250)
T ss_pred HHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHcC---CeEEEEeCCCCCHHHHHHHHHhC---CC-cEEEeeC--CCCcCC
Confidence 34444 6888887644 2466777777777765 44554441111234677777665 11 2223454 333311
Q ss_pred hhhHHHHHHHHHHHHHh-cCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc--------CCccHHHHHHHHH
Q 006783 536 WERLADMQEEILSICGA-AHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN--------KGKHVVEAVSTLD 606 (631)
Q Consensus 536 ~e~l~~~Qk~Ii~~c~a-agkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs--------kG~ypveAV~~L~ 606 (631)
-..++.-.++++..+++ .++|+++-. |+=|+..+.. ....|||++... .+..+-++++.+.
T Consensus 170 ~~~~~~~~~~~i~~vk~~~~~Pv~vGF---------GI~~~e~v~~-~~~~GADGvIVGSalVk~i~~~~~~~~~~~~~~ 239 (250)
T PLN02591 170 RASVSGRVESLLQELKEVTDKPVAVGF---------GISKPEHAKQ-IAGWGADGVIVGSAMVKALGEAKSPEEGLKRLE 239 (250)
T ss_pred CcCCchhHHHHHHHHHhcCCCceEEeC---------CCCCHHHHHH-HHhcCCCEEEECHHHHHhhhhccChhHHHHHHH
Confidence 22445555666666666 599999844 6666666443 233689998875 1223445555555
Q ss_pred HHHHHH
Q 006783 607 KILHIN 612 (631)
Q Consensus 607 ~Il~r~ 612 (631)
..++.+
T Consensus 240 ~~~~~l 245 (250)
T PLN02591 240 KLAKSL 245 (250)
T ss_pred HHHHHH
Confidence 555544
No 178
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=51.50 E-value=3.9e+02 Score=29.92 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=46.4
Q ss_pred CChhcHHhHHHHHh--cCCEEEEecc---------------CChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHH
Q 006783 448 LTTKDLMDLEFVAS--HADMVGISFV---------------RDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHI 510 (631)
Q Consensus 448 LTekD~~dl~f~~~--~~D~V~~SFV---------------~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eI 510 (631)
-+++|..++.--++ ++|+|-+.|- ++++-+.++-+.+++. .++.|++||=- -+.++.++
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~--~~iPv~vKLsP--n~t~i~~i 199 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK--ATVPVWAKMTP--NITDITQP 199 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh--hcCceEEEeCC--ChhhHHHH
Confidence 56777776654443 5899998763 4455565555555443 35889999962 34456666
Q ss_pred HHHhhcCCCCcEEEE
Q 006783 511 LLEAMKSSNPLGVMI 525 (631)
Q Consensus 511 l~~a~~~~~~DGImI 525 (631)
+..+. ..|.|||..
T Consensus 200 a~aa~-~~Gadgi~l 213 (385)
T PLN02495 200 ARVAL-KSGCEGVAA 213 (385)
T ss_pred HHHHH-HhCCCEEEE
Confidence 65543 337899977
No 179
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=51.45 E-value=2.5e+02 Score=27.63 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=61.1
Q ss_pred HHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEE-eecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccCh
Q 006783 459 VAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVL-KIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGW 536 (631)
Q Consensus 459 ~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~Iia-KIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~ 536 (631)
+++ ++++|-+.+ ++......++.+-+..+ +..|-+ -|=|.+ ++++.+.. |.|+|+..-.|
T Consensus 25 l~~~G~~~vev~~-~~~~~~~~i~~l~~~~~--~~~iGag~v~~~~---~~~~a~~~-----Ga~~i~~p~~~------- 86 (190)
T cd00452 25 LIEGGIRAIEITL-RTPGALEAIRALRKEFP--EALIGAGTVLTPE---QADAAIAA-----GAQFIVSPGLD------- 86 (190)
T ss_pred HHHCCCCEEEEeC-CChhHHHHHHHHHHHCC--CCEEEEEeCCCHH---HHHHHHHc-----CCCEEEcCCCC-------
Confidence 445 699999995 67777777766544432 333222 333344 34444432 56899754222
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 537 ERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 537 e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
..++..|+..+.|++. +.-|..|+..+ ...|+|.+.+.
T Consensus 87 -------~~~~~~~~~~~~~~i~-----------gv~t~~e~~~A-~~~Gad~i~~~ 124 (190)
T cd00452 87 -------PEVVKAANRAGIPLLP-----------GVATPTEIMQA-LELGADIVKLF 124 (190)
T ss_pred -------HHHHHHHHHcCCcEEC-----------CcCCHHHHHHH-HHCCCCEEEEc
Confidence 4688999999999875 34466665433 33699999985
No 180
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=51.27 E-value=1.1e+02 Score=32.25 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=47.8
Q ss_pred CCcEEEEecCCcc--cccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccccc
Q 006783 519 NPLGVMIARGDLA--VECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN 593 (631)
Q Consensus 519 ~~DGImIaRGDL~--veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs 593 (631)
|++||++. |--| ..+..++=.++.+..++.+. -.+|||.-+ +..+-.|.-+.+.. .|+|++|+.
T Consensus 32 Gv~Gi~~~-GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv---------~~~s~~~~i~~a~~a~~~Gad~v~v~ 100 (285)
T TIGR00674 32 GTDAIVVV-GTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGT---------GSNATEEAISLTKFAEDVGADGFLVV 100 (285)
T ss_pred CCCEEEEC-ccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeC---------CCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 78999984 3222 22333444444444444432 247888643 34444555554443 699999997
Q ss_pred ----CCccHHHHHHHHHHHHHHH
Q 006783 594 ----KGKHVVEAVSTLDKILHIN 612 (631)
Q Consensus 594 ----kG~ypveAV~~L~~Il~r~ 612 (631)
..+-.-+.++....|+...
T Consensus 101 pP~y~~~~~~~i~~~~~~i~~~~ 123 (285)
T TIGR00674 101 TPYYNKPTQEGLYQHFKAIAEEV 123 (285)
T ss_pred CCcCCCCCHHHHHHHHHHHHhcC
Confidence 3334566678888887753
No 181
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=51.21 E-value=1.2e+02 Score=28.87 Aligned_cols=121 Identities=12% Similarity=0.128 Sum_probs=64.2
Q ss_pred HHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCC-CceEEEeecChh-------hhcchHHHHHHhhcCCCCcEEEEe
Q 006783 456 LEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQ-NLGVVLKIETKS-------GFERLPHILLEAMKSSNPLGVMIA 526 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~-~~~IiaKIEt~~-------av~NL~eIl~~a~~~~~~DGImIa 526 (631)
+++.++ ++|.|.+.. +-++.+++.. + . ++.+++++=... .++..++... .|.|+|++.
T Consensus 19 ~~~~~~~gv~gi~~~g----~~i~~~~~~~---~-~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~-----~Gad~i~v~ 85 (201)
T cd00945 19 CDEAIEYGFAAVCVNP----GYVRLAADAL---A-GSDVPVIVVVGFPTGLTTTEVKVAEVEEAID-----LGADEIDVV 85 (201)
T ss_pred HHHHHHhCCcEEEECH----HHHHHHHHHh---C-CCCCeEEEEecCCCCCCcHHHHHHHHHHHHH-----cCCCEEEEe
Confidence 345555 699888875 4444444433 2 3 588999986544 4444444332 278999985
Q ss_pred cC-CcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhh---hccccCcccccCCc
Q 006783 527 RG-DLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVA---SARRASCVMLNKGK 596 (631)
Q Consensus 527 RG-DL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva---~a~gaD~vmLskG~ 596 (631)
.- ....+-..+.+.+.-+++...| ..+.|+++-.- -..+ .+-.++...+ ...|+|++=.+.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~-p~~~-----~~~~~~~~~~~~~~~~g~~~iK~~~~~ 152 (201)
T cd00945 86 INIGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILE-TRGL-----KTADEIAKAARIAAEAGADFIKTSTGF 152 (201)
T ss_pred ccHHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEE-CCCC-----CCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 21 1111101344445555555555 46999986321 0000 1223333332 22588888777664
No 182
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=51.19 E-value=1.6e+02 Score=29.33 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=58.8
Q ss_pred EEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhh-cchHHHHHHhhcCCCCcEEEEecCCccc-ccChhhHHHHH
Q 006783 466 VGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGF-ERLPHILLEAMKSSNPLGVMIARGDLAV-ECGWERLADMQ 543 (631)
Q Consensus 466 V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av-~NL~eIl~~a~~~~~~DGImIaRGDL~v-eig~e~l~~~Q 543 (631)
.+-++.++++-+.++-+.+.+.- .+.+..|+-.-... +...+++... ...|+|.|-|.-+.-.. -.+...+
T Consensus 100 ~G~~l~~~~~~~~eii~~v~~~~--~~~v~vk~r~~~~~~~~~~~~~~~l-~~~Gvd~i~v~~~~~~~~~~~~~~~---- 172 (231)
T cd02801 100 AGAALLKDPELVAEIVRAVREAV--PIPVTVKIRLGWDDEEETLELAKAL-EDAGASALTVHGRTREQRYSGPADW---- 172 (231)
T ss_pred eeehhcCCHHHHHHHHHHHHHhc--CCCEEEEEeeccCCchHHHHHHHHH-HHhCCCEEEECCCCHHHcCCCCCCH----
Confidence 44455566666666666665432 25678887321100 1222222211 12267888774331100 1111122
Q ss_pred HHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 544 EEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 544 k~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
+.+-..++..++||+.. .++-|..++.++....|+|.||+.
T Consensus 173 ~~~~~i~~~~~ipvi~~---------Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 173 DYIAEIKEAVSIPVIAN---------GDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHHHHhCCCCeEEEe---------CCCCCHHHHHHHHHhcCCCEEEEc
Confidence 22223344568899873 356677777777666799999998
No 183
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=50.73 E-value=1.3e+02 Score=31.41 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=59.8
Q ss_pred CCCChhcHHhH-HHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhc----------chHHHHHH
Q 006783 446 EGLTTKDLMDL-EFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFE----------RLPHILLE 513 (631)
Q Consensus 446 p~LTekD~~dl-~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~----------NL~eIl~~ 513 (631)
|.-|..|.+.+ +.+.+ ++|.|.++ +.-+...++.+ + .++.++.+|++.-.+. ..++.+.
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~----~~~~~~~~~~~---~-~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~- 104 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMH----KGLARHGHRGY---G-RDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIK- 104 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeC----HhHHhhhcccc---C-CCCcEEEEEcCCCCCCCCCCcceeeecHHHHHH-
Confidence 44466777654 45677 69988886 33444444333 1 3477999999544441 1333332
Q ss_pred hhcCCCCcEEEEe--cCCcccccChhhHHHHHHHHHHHHHhcCCCEEE
Q 006783 514 AMKSSNPLGVMIA--RGDLAVECGWERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 514 a~~~~~~DGImIa--RGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
.|.|+|.+- -|++. .+.+.+.-+++.+.|+++|+|+++
T Consensus 105 ----~Gad~v~~~~~~g~~~----~~~~~~~~~~v~~~~~~~g~pl~v 144 (267)
T PRK07226 105 ----LGADAVSVHVNVGSET----EAEMLEDLGEVAEECEEWGMPLLA 144 (267)
T ss_pred ----cCCCEEEEEEecCChh----HHHHHHHHHHHHHHHHHcCCcEEE
Confidence 267776553 22221 456677777889999999999987
No 184
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=50.39 E-value=57 Score=36.24 Aligned_cols=151 Identities=21% Similarity=0.243 Sum_probs=70.0
Q ss_pred CEEEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHHHhcCCEEEEe---ccCChhHHHHHHHHHHHhCCC
Q 006783 414 SEIVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVASHADMVGIS---FVRDSCDIAMLRKELEKRKVQ 490 (631)
Q Consensus 414 ~~i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~~~~D~V~~S---FV~sa~Dv~~lr~~L~~~~~~ 490 (631)
+.|+.++-. |. |+..|=.||+..+. .+++.+.-+-.+.|.+.-+ -+.|.+|+.++.+.|++.+ .
T Consensus 136 ~~iEIKigQ----GA--KpG~GG~Lp~~KV~------~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~-~ 202 (368)
T PF01645_consen 136 DMIEIKIGQ----GA--KPGEGGHLPGEKVT------EEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELN-P 202 (368)
T ss_dssp SEEEEE-------TT--STTT--EE-GGG--------HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH--T
T ss_pred CeEEEEEec----Cc--cccCcceechhhch------HHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhC-C
Confidence 445555543 33 34445556665532 2333333333467766653 3678888888888888876 4
Q ss_pred CceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCC---------cccccChh---hHHHHHHHHHHHHHhcCCCEE
Q 006783 491 NLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGD---------LAVECGWE---RLADMQEEILSICGAAHVPVI 558 (631)
Q Consensus 491 ~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGD---------L~veig~e---~l~~~Qk~Ii~~c~aagkPvi 558 (631)
...|-.|+=.-..++-+...+..+ ++|.|.|.=++ +.=+.|.+ -+.++.+.+... ...++..+
T Consensus 203 ~~pVgvKl~~~~~~~~~~~~~~~a----g~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~-glr~~V~L 277 (368)
T PF01645_consen 203 GKPVGVKLVAGRGVEDIAAGAAKA----GADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKN-GLRDRVSL 277 (368)
T ss_dssp TSEEEEEEE-STTHHHHHHHHHHT----T-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCT-T-CCCSEE
T ss_pred CCcEEEEECCCCcHHHHHHhhhhc----cCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHc-CCCCceEE
Confidence 678888986655555444444444 78999996443 22344443 233333322221 11233444
Q ss_pred EEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 559 WATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 559 ~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
+++- ++-| =.|++.+ .|||+|.+.
T Consensus 278 i~sG--------gl~t---~~dv~kalaLGAD~v~ig 303 (368)
T PF01645_consen 278 IASG--------GLRT---GDDVAKALALGADAVYIG 303 (368)
T ss_dssp EEES--------S--S---HHHHHHHHHCT-SEEE-S
T ss_pred EEeC--------CccC---HHHHHHHHhcCCCeeEec
Confidence 4432 2333 3467766 699988653
No 185
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.32 E-value=47 Score=33.97 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCcccccCCccHHHH
Q 006783 542 MQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLNKGKHVVEA 601 (631)
Q Consensus 542 ~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLskG~ypveA 601 (631)
.-.+++..|+++++|.+= +.-|..|+.. +...|+|.|=| ||.++
T Consensus 96 ~~~~vi~~a~~~~i~~iP-----------G~~TptEi~~-a~~~Ga~~vKl----FPa~~ 139 (212)
T PRK05718 96 LTPPLLKAAQEGPIPLIP-----------GVSTPSELML-GMELGLRTFKF----FPAEA 139 (212)
T ss_pred CCHHHHHHHHHcCCCEeC-----------CCCCHHHHHH-HHHCCCCEEEE----ccchh
Confidence 345889999999999983 3444446332 33368998887 55543
No 186
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=50.30 E-value=1.9e+02 Score=30.18 Aligned_cols=106 Identities=12% Similarity=0.077 Sum_probs=60.8
Q ss_pred hHHHHHh-cCCEEEEe------ccCChhHHHHHHHHHHHhCCCCceEEEeecC---hhhhcchHHHHHHhhcCCCCcEEE
Q 006783 455 DLEFVAS-HADMVGIS------FVRDSCDIAMLRKELEKRKVQNLGVVLKIET---KSGFERLPHILLEAMKSSNPLGVM 524 (631)
Q Consensus 455 dl~f~~~-~~D~V~~S------FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt---~~av~NL~eIl~~a~~~~~~DGIm 524 (631)
.++|.++ ++|.|.+. +--|.++-.++-+...+....++.||+-+-. .++++..... . ..|+||||
T Consensus 26 ~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a-~----~~G~d~v~ 100 (284)
T cd00950 26 LIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRA-E----KAGADAAL 100 (284)
T ss_pred HHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHH-H----HcCCCEEE
Confidence 4567666 78888763 2345555555555444443356788888854 3444333322 2 33889999
Q ss_pred EecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEE-----------echhhhhhh
Q 006783 525 IARGDLAVECGWERLADMQEEILSICGAAHVPVIWA-----------TQVLESLVK 569 (631)
Q Consensus 525 IaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~A-----------TQvLESM~~ 569 (631)
+.+-... -.+-+.+...-++| |++.+.|+++- +++++.+++
T Consensus 101 ~~~P~~~-~~~~~~l~~~~~~i---a~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~ 152 (284)
T cd00950 101 VVTPYYN-KPSQEGLYAHFKAI---AEATDLPVILYNVPGRTGVNIEPETVLRLAE 152 (284)
T ss_pred EcccccC-CCCHHHHHHHHHHH---HhcCCCCEEEEEChhHhCCCCCHHHHHHHhc
Confidence 9866442 12234555444444 44568998853 455666665
No 187
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.03 E-value=60 Score=33.19 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=67.4
Q ss_pred CCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCc--EEEEecC--------Cccc
Q 006783 463 ADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPL--GVMIARG--------DLAV 532 (631)
Q Consensus 463 ~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~D--GImIaRG--------DL~v 532 (631)
.-.|.+=...++++...+-+.|.+-|..-+-|-. -|+.+++.|.+|...- .+ .++||-| +.++
T Consensus 13 ~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~--~~~~a~~~i~~l~~~~-----~~~p~~~vGaGTV~~~~~~~~a~ 85 (213)
T PRK06552 13 NGVVAVVRGESKEEALKISLAVIKGGIKAIEVTY--TNPFASEVIKELVELY-----KDDPEVLIGAGTVLDAVTARLAI 85 (213)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEC--CCccHHHHHHHHHHHc-----CCCCCeEEeeeeCCCHHHHHHHH
Confidence 3446665666777777777777666543333333 3677777777776532 12 3677655 1222
Q ss_pred ccChh--hHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 533 ECGWE--RLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 533 eig~e--~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
+.|.+ --|-.-.+++..|+++++|++= |.=|..|+..+ ...|+|.+-+-
T Consensus 86 ~aGA~FivsP~~~~~v~~~~~~~~i~~iP-----------G~~T~~E~~~A-~~~Gad~vklF 136 (213)
T PRK06552 86 LAGAQFIVSPSFNRETAKICNLYQIPYLP-----------GCMTVTEIVTA-LEAGSEIVKLF 136 (213)
T ss_pred HcCCCEEECCCCCHHHHHHHHHcCCCEEC-----------CcCCHHHHHHH-HHcCCCEEEEC
Confidence 22211 1233457899999999999995 44455565433 34799999983
No 188
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.94 E-value=27 Score=35.57 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 542 MQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 542 ~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
...+++..|+++++|++= |.-|..| +..| .|+|.|=+-
T Consensus 85 ~~~~vi~~a~~~~i~~iP-----------G~~TptE---i~~A~~~Ga~~vK~F 124 (201)
T PRK06015 85 TTQELLAAANDSDVPLLP-----------GAATPSE---VMALREEGYTVLKFF 124 (201)
T ss_pred CCHHHHHHHHHcCCCEeC-----------CCCCHHH---HHHHHHCCCCEEEEC
Confidence 557899999999999983 4445555 5555 588887764
No 189
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=49.81 E-value=2.1e+02 Score=31.51 Aligned_cols=147 Identities=18% Similarity=0.148 Sum_probs=81.6
Q ss_pred CChhcHHhHHHHH-h-cCCEEEE-eccCChh------HHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCC
Q 006783 448 LTTKDLMDLEFVA-S-HADMVGI-SFVRDSC------DIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSS 518 (631)
Q Consensus 448 LTekD~~dl~f~~-~-~~D~V~~-SFV~sa~------Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~ 518 (631)
+|.+++..|...+ + ++|.|-+ ||| ++. |-.++.+.+.+.....+..++ =+.++++.. +. +
T Consensus 65 ~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~~~~~~~~l~--~n~~die~A---~~-~---- 133 (347)
T PLN02746 65 VPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNLEGARFPVLT--PNLKGFEAA---IA-A---- 133 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhccCCceeEEc--CCHHHHHHH---HH-c----
Confidence 5566776666555 3 7999977 466 542 333333344332212233332 244444432 21 2
Q ss_pred CCcEEEEe--cCCccc----ccChhhHHHHHHHHHHHHHhcCCCEE--EEechhhhhhhCCCCChhh---HHhhhhc---
Q 006783 519 NPLGVMIA--RGDLAV----ECGWERLADMQEEILSICGAAHVPVI--WATQVLESLVKFGVPTRAE---ITDVASA--- 584 (631)
Q Consensus 519 ~~DGImIa--RGDL~v----eig~e~l~~~Qk~Ii~~c~aagkPvi--~ATQvLESM~~~~~PtRAE---vtDva~a--- 584 (631)
++|.|-|. =.|+=. ....++..+..++++..|+++|..|. +++. ..++.-+|++ +.+++..
T Consensus 134 g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~-----fg~p~~~r~~~~~l~~~~~~~~~ 208 (347)
T PLN02746 134 GAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCV-----VGCPIEGPVPPSKVAYVAKELYD 208 (347)
T ss_pred CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEee-----ecCCccCCCCHHHHHHHHHHHHH
Confidence 46765553 333322 23457788888899999999999885 2221 1234444543 3333333
Q ss_pred cccCccccc--CC-ccHHHHHHHHHHHHH
Q 006783 585 RRASCVMLN--KG-KHVVEAVSTLDKILH 610 (631)
Q Consensus 585 ~gaD~vmLs--kG-~ypveAV~~L~~Il~ 610 (631)
.|+|.|.|. .| -.|.+.-+.+..+.+
T Consensus 209 ~Gad~I~l~DT~G~a~P~~v~~lv~~l~~ 237 (347)
T PLN02746 209 MGCYEISLGDTIGVGTPGTVVPMLEAVMA 237 (347)
T ss_pred cCCCEEEecCCcCCcCHHHHHHHHHHHHH
Confidence 699999997 33 457777776666654
No 190
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=49.75 E-value=3.2e+02 Score=28.31 Aligned_cols=147 Identities=8% Similarity=0.054 Sum_probs=83.0
Q ss_pred CCChhcHHhHHHHH-h-cCCEEEEeccCCh-hHHHHHHHHHHHhCCCCceEEEee-cChhhhcchHHHHHHhhcCCCCcE
Q 006783 447 GLTTKDLMDLEFVA-S-HADMVGISFVRDS-CDIAMLRKELEKRKVQNLGVVLKI-ETKSGFERLPHILLEAMKSSNPLG 522 (631)
Q Consensus 447 ~LTekD~~dl~f~~-~-~~D~V~~SFV~sa-~Dv~~lr~~L~~~~~~~~~IiaKI-Et~~av~NL~eIl~~a~~~~~~DG 522 (631)
.+|.+++..+--.+ + ++|.|-++|.+.. .+.+.++.+.+ .+ .+..+.+-. -+.+++ +..+. + ++|.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~-~~-~~~~~~~~~r~~~~~v---~~a~~-~----g~~~ 85 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVA-LG-LPARLIVWCRAVKEDI---EAALR-C----GVTA 85 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHh-cC-CCCEEEEeccCCHHHH---HHHHh-C----CcCE
Confidence 46667776665444 3 7999998876544 44455555443 22 234444332 233343 22222 1 4566
Q ss_pred EEEe--cCCc----ccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccccc
Q 006783 523 VMIA--RGDL----AVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN 593 (631)
Q Consensus 523 ImIa--RGDL----~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs 593 (631)
|-+. -.|. -.....+......++++..|++.|..|.+.. ...+.-+..++.+++.. .|+|.+.|.
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEeC
Confidence 5553 2222 1112234555666778999999999877533 24445566777776655 599999997
Q ss_pred --CC-ccHHHHHHHHHHHH
Q 006783 594 --KG-KHVVEAVSTLDKIL 609 (631)
Q Consensus 594 --kG-~ypveAV~~L~~Il 609 (631)
.| -+|-+.-+.+..+.
T Consensus 160 DT~G~~~P~~v~~lv~~l~ 178 (259)
T cd07939 160 DTVGILDPFTTYELIRRLR 178 (259)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 44 45655544444444
No 191
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=49.62 E-value=2.1e+02 Score=31.67 Aligned_cols=132 Identities=21% Similarity=0.220 Sum_probs=61.9
Q ss_pred CCChhcHHhHHHHHhcCCEEEEeccCChhHHHHHHH----------------HHHHhCCCCceEEEee--c-Chhhhcch
Q 006783 447 GLTTKDLMDLEFVASHADMVGISFVRDSCDIAMLRK----------------ELEKRKVQNLGVVLKI--E-TKSGFERL 507 (631)
Q Consensus 447 ~LTekD~~dl~f~~~~~D~V~~SFV~sa~Dv~~lr~----------------~L~~~~~~~~~IiaKI--E-t~~av~NL 507 (631)
.+.++-++.|.-+.+...+-.++=|-+.++++.+.+ +|+..+..+..|+.|= - |.+-+.+.
T Consensus 148 G~g~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A 227 (352)
T PRK13396 148 GHGESALELLAAAREATGLGIITEVMDAADLEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMA 227 (352)
T ss_pred CchHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHH
Confidence 344555555555554444444455555555555533 2333332334555552 1 22233333
Q ss_pred HHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCC-----hhhH---H
Q 006783 508 PHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPT-----RAEI---T 579 (631)
Q Consensus 508 ~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~Pt-----RAEv---t 579 (631)
-|.+... -+.+-++.=||=-+.+-++.+...=-.-|...-+..|.|||+ .|| |.-+ .
T Consensus 228 ~e~i~~~---Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~------------DpsH~~G~sd~~~~~a 292 (352)
T PRK13396 228 AEYILAA---GNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMI------------DPSHGTGKSEYVPSMA 292 (352)
T ss_pred HHHHHHc---CCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEE------------CCcccCCcHHHHHHHH
Confidence 3333222 122455556765554433332211222333333445899976 444 2222 2
Q ss_pred hhhhccccCccccc
Q 006783 580 DVASARRASCVMLN 593 (631)
Q Consensus 580 Dva~a~gaD~vmLs 593 (631)
=+|.|.|||++|+-
T Consensus 293 ~AAva~GAdGliIE 306 (352)
T PRK13396 293 MAAIAAGTDSLMIE 306 (352)
T ss_pred HHHHhhCCCeEEEE
Confidence 24455799999985
No 192
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=49.52 E-value=3.5e+02 Score=30.08 Aligned_cols=134 Identities=20% Similarity=0.237 Sum_probs=94.2
Q ss_pred cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHH
Q 006783 462 HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLAD 541 (631)
Q Consensus 462 ~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~ 541 (631)
++|+|=++ |.+.++...++++-++. ++.+|+-|-=- ..++..++.+ ++|.+=|.||..+.+=
T Consensus 49 G~dIVRvt-v~~~e~A~A~~~Ik~~~---~vPLVaDiHf~------~rla~~~~~~-g~~k~RINPGNig~~~------- 110 (361)
T COG0821 49 GCDIVRVT-VPDMEAAEALKEIKQRL---NVPLVADIHFD------YRLALEAAEC-GVDKVRINPGNIGFKD------- 110 (361)
T ss_pred CCCEEEEe-cCCHHHHHHHHHHHHhC---CCCEEEEeecc------HHHHHHhhhc-CcceEEECCcccCcHH-------
Confidence 69999988 88888888887755443 68899988431 4444444433 5899999999876653
Q ss_pred HHHHHHHHHHhcCCCEEEE--echhhh--hhhCCCCChhhHHhhhhc-------cccCccccc-CCccHHHHHHHHHHHH
Q 006783 542 MQEEILSICGAAHVPVIWA--TQVLES--LVKFGVPTRAEITDVASA-------RRASCVMLN-KGKHVVEAVSTLDKIL 609 (631)
Q Consensus 542 ~Qk~Ii~~c~aagkPvi~A--TQvLES--M~~~~~PtRAEvtDva~a-------~gaD~vmLs-kG~ypveAV~~L~~Il 609 (631)
--++++..|++.|||+=+- .-=||. |.+-+.||+.-+---|+- .|.+=+.+| |..-+.++|+.-..+.
T Consensus 111 ~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~Sdv~~~v~aYr~lA 190 (361)
T COG0821 111 RVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVKASDVQLMVAAYRLLA 190 (361)
T ss_pred HHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHH
Confidence 4467899999999999432 222332 223447887666554433 478888888 9999999999877777
Q ss_pred HHHh
Q 006783 610 HINT 613 (631)
Q Consensus 610 ~r~e 613 (631)
.+..
T Consensus 191 ~~~d 194 (361)
T COG0821 191 KRCD 194 (361)
T ss_pred HhcC
Confidence 6654
No 193
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=49.44 E-value=61 Score=34.03 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhc
Q 006783 474 SCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAA 553 (631)
Q Consensus 474 a~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aa 553 (631)
.+.++.++++.++.| +.+++-+-....++-+.+. +|.+-|+-+++. |-.++..+.+.
T Consensus 75 ~~gl~~l~~~~~~~G---l~~~t~~~d~~~~~~l~~~---------~d~lkI~s~~~~-----------n~~LL~~~a~~ 131 (260)
T TIGR01361 75 EEGLKLLRRAADEHG---LPVVTEVMDPRDVEIVAEY---------ADILQIGARNMQ-----------NFELLKEVGKQ 131 (260)
T ss_pred HHHHHHHHHHHHHhC---CCEEEeeCChhhHHHHHhh---------CCEEEECccccc-----------CHHHHHHHhcC
Confidence 455777777777665 7788888888777766554 288888866553 34478888889
Q ss_pred CCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccccc
Q 006783 554 HVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN 593 (631)
Q Consensus 554 gkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs 593 (631)
||||++.|-| .+|-.|+-.++.. .|.+-++|.
T Consensus 132 gkPVilk~G~--------~~t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 132 GKPVLLKRGM--------GNTIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred CCcEEEeCCC--------CCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 9999985532 2367777666655 366556653
No 194
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=49.37 E-value=3e+02 Score=32.07 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=93.3
Q ss_pred CCChhcHHhHHHHHh--cCCEEEEec-cCChhHHHHHHHHHHHhCCCCceEEEeecC-hhhh--c---chHHHHHHhhcC
Q 006783 447 GLTTKDLMDLEFVAS--HADMVGISF-VRDSCDIAMLRKELEKRKVQNLGVVLKIET-KSGF--E---RLPHILLEAMKS 517 (631)
Q Consensus 447 ~LTekD~~dl~f~~~--~~D~V~~SF-V~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt-~~av--~---NL~eIl~~a~~~ 517 (631)
.+|.+++..|...+. ++|+|-++| .-|+.|...++.+.+ .+.++..|.+-.=+ +..+ + .++..+..
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~-~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~---- 93 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKE-MNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKA---- 93 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHH-hCCCCcEEEEEeeecCCCCCCchHHHHHHHhcC----
Confidence 467788877766553 799998876 458999999987654 33334555555422 2222 1 23333322
Q ss_pred CCCcEEEE--ecCCccccc----ChhhHHHHHHHHHHHHHhcCCCEEE-EechhhhhhhCCCCChhhHHhhhhc---ccc
Q 006783 518 SNPLGVMI--ARGDLAVEC----GWERLADMQEEILSICGAAHVPVIW-ATQVLESLVKFGVPTRAEITDVASA---RRA 587 (631)
Q Consensus 518 ~~~DGImI--aRGDL~vei----g~e~l~~~Qk~Ii~~c~aagkPvi~-ATQvLESM~~~~~PtRAEvtDva~a---~ga 587 (631)
+.+.|.| .=.|+-++. ..+++.+...+.+..++.+|..|.+ ++...+.. .-+..-+.+++.+ .|+
T Consensus 94 -~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~----r~~~~~l~~~~~~a~~aGa 168 (526)
T TIGR00977 94 -ETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGY----KANPEYALATLATAQQAGA 168 (526)
T ss_pred -CCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecc----cCCHHHHHHHHHHHHhCCC
Confidence 3454444 444554442 3477777788889999999998854 44442211 1233334444444 699
Q ss_pred Cccccc---CCccHHHHHHHHHHHHHH
Q 006783 588 SCVMLN---KGKHVVEAVSTLDKILHI 611 (631)
Q Consensus 588 D~vmLs---kG~ypveAV~~L~~Il~r 611 (631)
|.+.|. -+-.|.+.-+.+..+.++
T Consensus 169 d~i~i~DTvG~~~P~~v~~li~~l~~~ 195 (526)
T TIGR00977 169 DWLVLCDTNGGTLPHEISEITTKVKRS 195 (526)
T ss_pred CeEEEecCCCCcCHHHHHHHHHHHHHh
Confidence 999997 456777776666666543
No 195
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=49.13 E-value=3.3e+02 Score=30.11 Aligned_cols=150 Identities=11% Similarity=0.046 Sum_probs=88.2
Q ss_pred CCChhcHHhHHHHHh--cCCEEEEeccCCh-hHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEE
Q 006783 447 GLTTKDLMDLEFVAS--HADMVGISFVRDS-CDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGV 523 (631)
Q Consensus 447 ~LTekD~~dl~f~~~--~~D~V~~SFV~sa-~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGI 523 (631)
.+|.+++..|...+. ++|.|-++|-... +|.+.++.+. +.+ .+..+++-.-+ -.+.++..+. + |++.|
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~-~~~-~~~~i~~~~r~--~~~di~~a~~-~----g~~~i 92 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIA-KLG-LNASILALNRA--VKSDIDASID-C----GVDAV 92 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHH-hcC-CCeEEEEEccc--CHHHHHHHHh-C----CcCEE
Confidence 456777777766553 7999999886544 4445555543 344 23444444222 1223333332 2 45654
Q ss_pred EE--ecCCccc----ccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccccc-
Q 006783 524 MI--ARGDLAV----ECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN- 593 (631)
Q Consensus 524 mI--aRGDL~v----eig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs- 593 (631)
-| .-.|+-. -...++..+..++.+..+++.|..|.+.. ...+.-+...+.+++.+ .|+|.+.|.
T Consensus 93 ~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~D 166 (378)
T PRK11858 93 HIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA------EDASRTDLDFLIEFAKAAEEAGADRVRFCD 166 (378)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe------ccCCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 44 4445422 23346667777888999999999887742 23444555556655544 599999997
Q ss_pred --CCccHHHHHHHHHHHHHH
Q 006783 594 --KGKHVVEAVSTLDKILHI 611 (631)
Q Consensus 594 --kG~ypveAV~~L~~Il~r 611 (631)
-.-+|.+.-+.+..+.++
T Consensus 167 T~G~~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 167 TVGILDPFTMYELVKELVEA 186 (378)
T ss_pred cCCCCCHHHHHHHHHHHHHh
Confidence 455677666666655544
No 196
>PRK08227 autoinducer 2 aldolase; Validated
Probab=49.11 E-value=1.1e+02 Score=32.58 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=72.3
Q ss_pred HHHHHh-cCCEEEEe-ccCChhHHHHHH------HHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEec
Q 006783 456 LEFVAS-HADMVGIS-FVRDSCDIAMLR------KELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIAR 527 (631)
Q Consensus 456 l~f~~~-~~D~V~~S-FV~sa~Dv~~lr------~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaR 527 (631)
++-|++ ++|.|++. |+-+..+-+.++ +...+.| +.+++....-..+.|=+++++.+.|
T Consensus 100 VeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G---~Plla~~prG~~~~~~~~~ia~aaR----------- 165 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYG---MPVMAVTAVGKDMVRDARYFSLATR----------- 165 (264)
T ss_pred HHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhC---CcEEEEecCCCCcCchHHHHHHHHH-----------
Confidence 455777 79988884 333433333333 3333444 5566633333334554445655521
Q ss_pred CCcccccChh--hH---HHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc----CCc
Q 006783 528 GDLAVECGWE--RL---ADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN----KGK 596 (631)
Q Consensus 528 GDL~veig~e--~l---~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ 596 (631)
+++|+|.. ++ .+..++++. +..+||++|-- ...+++.-+..+..+ .|+-++... -=+
T Consensus 166 --iaaELGADiVK~~y~~~~f~~vv~---a~~vPVviaGG-------~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~ 233 (264)
T PRK08227 166 --IAAEMGAQIIKTYYVEEGFERITA---GCPVPIVIAGG-------KKLPERDALEMCYQAIDEGASGVDMGRNIFQSE 233 (264)
T ss_pred --HHHHHcCCEEecCCCHHHHHHHHH---cCCCcEEEeCC-------CCCCHHHHHHHHHHHHHcCCceeeechhhhccC
Confidence 34444431 11 134455555 55789999752 111333333444444 699999886 348
Q ss_pred cHHHHHHHHHHHHHH
Q 006783 597 HVVEAVSTLDKILHI 611 (631)
Q Consensus 597 ypveAV~~L~~Il~r 611 (631)
.|...++.|..|...
T Consensus 234 ~p~~~~~al~~IVh~ 248 (264)
T PRK08227 234 HPVAMIKAVHAVVHE 248 (264)
T ss_pred CHHHHHHHHHHHHhC
Confidence 899999999998864
No 197
>PRK09989 hypothetical protein; Provisional
Probab=48.89 E-value=2.5e+02 Score=28.65 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=84.7
Q ss_pred HhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEE----eec------------ChhhhcchHHHHHHhhc
Q 006783 454 MDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVL----KIE------------TKSGFERLPHILLEAMK 516 (631)
Q Consensus 454 ~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~Iia----KIE------------t~~av~NL~eIl~~a~~ 516 (631)
+.++.+.+ +.|.|-+.+... .+..++++.|++.|.. +..+. .+- ..+..+.+++.+..+ +
T Consensus 19 ~~l~~~~~~Gfd~VEl~~~~~-~~~~~~~~~l~~~Gl~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A-~ 95 (258)
T PRK09989 19 ERFAAARKAGFDAVEFLFPYD-YSTLQIQKQLEQNHLT-LALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYA-L 95 (258)
T ss_pred HHHHHHHHcCCCEEEECCccc-CCHHHHHHHHHHcCCc-EEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHH-H
Confidence 35677776 799999876433 4578888989887732 21111 110 023456677766544 2
Q ss_pred CCCCcEEEEecCCccc----ccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhh-----CCCCChhhHHhhhhcccc
Q 006783 517 SSNPLGVMIARGDLAV----ECGWERLADMQEEILSICGAAHVPVIWATQVLESLVK-----FGVPTRAEITDVASARRA 587 (631)
Q Consensus 517 ~~~~DGImIaRGDL~v----eig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~-----~~~PtRAEvtDva~a~ga 587 (631)
.-|...|.+..|-+.- +-.++.+.+.-+++...+++.|+.+.+ |.|-. ....|.++.-|+....+.
T Consensus 96 ~lg~~~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l-----E~l~~~~~~~~~~~~~~~~~~ll~~v~~ 170 (258)
T PRK09989 96 ALNCEQVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILV-----EALSPGVKPHYLFSSQYQALAIVEEVAR 170 (258)
T ss_pred HhCcCEEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEE-----EeCCCCCCCCCccCCHHHHHHHHHHcCC
Confidence 2256777776665431 112244666667778888888887664 44321 234566666677766666
Q ss_pred Cccccc--------CCccHHHHHHH
Q 006783 588 SCVMLN--------KGKHVVEAVST 604 (631)
Q Consensus 588 D~vmLs--------kG~ypveAV~~ 604 (631)
+.+.+. .|.-|.+.++.
T Consensus 171 ~~v~l~lD~~h~~~~~~~~~~~i~~ 195 (258)
T PRK09989 171 DNVFIQLDTFHAQKVDGNLTHLIRD 195 (258)
T ss_pred CCeEEEeehHhHHHcCCCHHHHHHH
Confidence 666554 45567666665
No 198
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=48.81 E-value=1.8e+02 Score=31.85 Aligned_cols=149 Identities=9% Similarity=0.005 Sum_probs=84.3
Q ss_pred CCChhcHHhHHHHHh--cCCEEEEeccCCh-hHHHHHHHHHHHhCCCCceEEEee-cChhhhcchHHHHHHhhcCCCCcE
Q 006783 447 GLTTKDLMDLEFVAS--HADMVGISFVRDS-CDIAMLRKELEKRKVQNLGVVLKI-ETKSGFERLPHILLEAMKSSNPLG 522 (631)
Q Consensus 447 ~LTekD~~dl~f~~~--~~D~V~~SFV~sa-~Dv~~lr~~L~~~~~~~~~IiaKI-Et~~av~NL~eIl~~a~~~~~~DG 522 (631)
.+|.+|+..|.-.+. ++|.|-++|-... .|.+.++.+ .+.+ .+..+.+-. -+.+.+ +..+. + |+|.
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i-~~~~-~~~~i~~~~r~~~~di---~~a~~-~----g~~~ 88 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAI-VALG-LPARLMAWCRARDADI---EAAAR-C----GVDA 88 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH-HHcC-CCcEEEEEcCCCHHHH---HHHHc-C----CcCE
Confidence 467778777765553 7999999877544 444555554 3333 234444433 223333 22222 2 4566
Q ss_pred EEE--ecCCcccc----cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccccc
Q 006783 523 VMI--ARGDLAVE----CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN 593 (631)
Q Consensus 523 ImI--aRGDL~ve----ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs 593 (631)
|.| .-.|+-.+ ...++..+..++.+..++++|..|.+.. ...+.-+...+.+++.+ .|+|.+.|.
T Consensus 89 i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~ 162 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG------EDASRADPDFLVELAEVAAEAGADRFRFA 162 (365)
T ss_pred EEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee------cCCCCCCHHHHHHHHHHHHHcCcCEEEEc
Confidence 554 33443222 2235555666788899999998877642 23344444555555444 599999987
Q ss_pred --C-CccHHHHHHHHHHHHHH
Q 006783 594 --K-GKHVVEAVSTLDKILHI 611 (631)
Q Consensus 594 --k-G~ypveAV~~L~~Il~r 611 (631)
. .-.|.+.-+.+..+.++
T Consensus 163 DT~G~~~P~~v~~lv~~l~~~ 183 (365)
T TIGR02660 163 DTVGILDPFSTYELVRALRQA 183 (365)
T ss_pred ccCCCCCHHHHHHHHHHHHHh
Confidence 3 45566665555555443
No 199
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=48.75 E-value=2.4e+02 Score=30.19 Aligned_cols=113 Identities=14% Similarity=0.207 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhCCCCceEEEeecCh-------hhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHH
Q 006783 475 CDIAMLRKELEKRKVQNLGVVLKIETK-------SGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEIL 547 (631)
Q Consensus 475 ~Dv~~lr~~L~~~~~~~~~IiaKIEt~-------~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii 547 (631)
+-+..++...+.+...++.|+|..+.. ++++....-.+ .|.|+|||- .+... .++|.
T Consensus 136 e~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~e-----AGAD~ifv~-------~~~~~----~~ei~ 199 (285)
T TIGR02320 136 EFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAE-----AGADGIMIH-------SRKKD----PDEIL 199 (285)
T ss_pred HHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHH-----cCCCEEEec-------CCCCC----HHHHH
Confidence 344555554444333579999997764 34444333332 378999994 11111 23444
Q ss_pred HHHHhcC-----CCEEEEechhhhhhhCCCCChhhHHhhhhccccCcccccCCccH-HHHHHHHHHHHHHHhhc
Q 006783 548 SICGAAH-----VPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLNKGKHV-VEAVSTLDKILHINTAQ 615 (631)
Q Consensus 548 ~~c~aag-----kPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLskG~yp-veAV~~L~~Il~r~e~~ 615 (631)
..|++.. +|+++. +...+.++.+|+.+ .|+..| +.|+++ --|.+.|.++++.+..+
T Consensus 200 ~~~~~~~~~~p~~pl~~~------~~~~~~~~~~eL~~----lG~~~v--~~~~~~~~aa~~a~~~~~~~~~~~ 261 (285)
T TIGR02320 200 EFARRFRNHYPRTPLVIV------PTSYYTTPTDEFRD----AGISVV--IYANHLLRAAYAAMQQVAERILEH 261 (285)
T ss_pred HHHHHhhhhCCCCCEEEe------cCCCCCCCHHHHHH----cCCCEE--EEhHHHHHHHHHHHHHHHHHHHHc
Confidence 5555543 487531 23456666656443 355543 344444 34567777777766544
No 200
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=48.53 E-value=1.1e+02 Score=33.92 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhh--CCCCChhhHHhhhhc-cccCccccc
Q 006783 537 ERLADMQEEILSICGAAHVPVIWATQVLESLVK--FGVPTRAEITDVASA-RRASCVMLN 593 (631)
Q Consensus 537 e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~--~~~PtRAEvtDva~a-~gaD~vmLs 593 (631)
..+..+-+.+-..|+..++|||+.+|+=-..-+ ...|+.+.+.+-... ..||+||+-
T Consensus 328 ~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l 387 (434)
T TIGR00665 328 QEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFL 387 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEe
Confidence 446677788888999999999999997654322 345665555543332 589988853
No 201
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=48.42 E-value=4.5e+02 Score=31.77 Aligned_cols=145 Identities=12% Similarity=0.118 Sum_probs=75.5
Q ss_pred CCChhcHHhHH--H------HHh-cCCEEEEecc---------C----------------ChhHHHHHHHHHHHhCCCCc
Q 006783 447 GLTTKDLMDLE--F------VAS-HADMVGISFV---------R----------------DSCDIAMLRKELEKRKVQNL 492 (631)
Q Consensus 447 ~LTekD~~dl~--f------~~~-~~D~V~~SFV---------~----------------sa~Dv~~lr~~L~~~~~~~~ 492 (631)
.||..|++.+. | +.+ ++|+|-+... . ...-+.++-+.+++.-+.+.
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCC
Confidence 69999998763 3 223 6899987443 1 12223333344444322567
Q ss_pred eEEEeecChhhhc---chH---HHHHHhhcCCCCcEEEEecCCccccc--ChhhHHHHHHHHHHHH-HhcCCCEEEEech
Q 006783 493 GVVLKIETKSGFE---RLP---HILLEAMKSSNPLGVMIARGDLAVEC--GWERLADMQEEILSIC-GAAHVPVIWATQV 563 (631)
Q Consensus 493 ~IiaKIEt~~av~---NL~---eIl~~a~~~~~~DGImIaRGDL~vei--g~e~l~~~Qk~Ii~~c-~aagkPvi~ATQv 563 (631)
.|..||--.+-.+ .++ +++.. +...|+|.|-|.-|--.-+. .+.+ ..|....... ++.++|||...
T Consensus 620 ~v~~ri~~~~~~~~g~~~~~~~~~~~~-l~~~g~d~i~vs~g~~~~~~~~~~~~--~~~~~~~~~ik~~~~~pv~~~G-- 694 (765)
T PRK08255 620 PMSVRISAHDWVEGGNTPDDAVEIARA-FKAAGADLIDVSSGQVSKDEKPVYGR--MYQTPFADRIRNEAGIATIAVG-- 694 (765)
T ss_pred eeEEEEccccccCCCCCHHHHHHHHHH-HHhcCCcEEEeCCCCCCcCCCCCcCc--cccHHHHHHHHHHcCCEEEEeC--
Confidence 7888886422221 122 22222 12237899988655322110 0000 1122222222 23588998744
Q ss_pred hhhhhhCCCCChhhHHhhhhccccCccccc----CCc-cHHHHHH
Q 006783 564 LESLVKFGVPTRAEITDVASARRASCVMLN----KGK-HVVEAVS 603 (631)
Q Consensus 564 LESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~-ypveAV~ 603 (631)
.+-|..++.++...-++|.||+. .=| +|..+..
T Consensus 695 -------~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~~~ 732 (765)
T PRK08255 695 -------AISEADHVNSIIAAGRADLCALARPHLADPAWTLHEAA 732 (765)
T ss_pred -------CCCCHHHHHHHHHcCCcceeeEcHHHHhCccHHHHHHH
Confidence 45566666666666789999998 344 5554433
No 202
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=48.37 E-value=1.3e+02 Score=33.23 Aligned_cols=89 Identities=24% Similarity=0.409 Sum_probs=49.7
Q ss_pred ChhHHHHHHHHHHHhCCCCceEEEe-ecChhhhcchHHHHHHhhcCCCCcEEEEe-cCCcccc--cChhhHHHHHHHHHH
Q 006783 473 DSCDIAMLRKELEKRKVQNLGVVLK-IETKSGFERLPHILLEAMKSSNPLGVMIA-RGDLAVE--CGWERLADMQEEILS 548 (631)
Q Consensus 473 sa~Dv~~lr~~L~~~~~~~~~IiaK-IEt~~av~NL~eIl~~a~~~~~~DGImIa-RGDL~ve--ig~e~l~~~Qk~Ii~ 548 (631)
+.+++..+++.. +..|++| |-+++-. .++.. .|+|||.|. -| |-. -+...+ +.+..
T Consensus 209 ~~~~l~~lr~~~------~~PvivKgv~~~~dA----~~a~~----~G~d~I~vsnhG--Gr~ld~~~~~~----~~l~~ 268 (351)
T cd04737 209 SPADIEFIAKIS------GLPVIVKGIQSPEDA----DVAIN----AGADGIWVSNHG--GRQLDGGPASF----DSLPE 268 (351)
T ss_pred CHHHHHHHHHHh------CCcEEEecCCCHHHH----HHHHH----cCCCEEEEeCCC--CccCCCCchHH----HHHHH
Confidence 678888877754 3679999 3332111 22222 389999993 12 111 111111 12222
Q ss_pred HHHhc--CCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 549 ICGAA--HVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 549 ~c~aa--gkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
.+++. .+|||... ++-+- .|++.+ .|||+||+.
T Consensus 269 i~~a~~~~i~vi~dG---------GIr~g---~Di~kaLalGA~~V~iG 305 (351)
T cd04737 269 IAEAVNHRVPIIFDS---------GVRRG---EHVFKALASGADAVAVG 305 (351)
T ss_pred HHHHhCCCCeEEEEC---------CCCCH---HHHHHHHHcCCCEEEEC
Confidence 33334 48988744 45553 456555 799999997
No 203
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=48.12 E-value=1.4e+02 Score=30.98 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=56.2
Q ss_pred HHHHh-cCCEEEE---------------eccCChhHHHHHHHHHHHhCC-CCceEEEeecChhhh-cchHHHHHHh--hc
Q 006783 457 EFVAS-HADMVGI---------------SFVRDSCDIAMLRKELEKRKV-QNLGVVLKIETKSGF-ERLPHILLEA--MK 516 (631)
Q Consensus 457 ~f~~~-~~D~V~~---------------SFV~sa~Dv~~lr~~L~~~~~-~~~~IiaKIEt~~av-~NL~eIl~~a--~~ 516 (631)
+...+ +++.|.+ ..+...+-+..++.....+.. .++.|+|..++...- ..+++-+.-+ ..
T Consensus 91 ~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~ 170 (243)
T cd00377 91 RELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYA 170 (243)
T ss_pred HHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHH
Confidence 33334 6888888 455555666777776665553 479999997764321 2233332211 12
Q ss_pred CCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEE
Q 006783 517 SSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 517 ~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
..|.|+|||-... -.+++-..+++...|+.+
T Consensus 171 ~AGAD~v~v~~~~------------~~~~~~~~~~~~~~Pl~~ 201 (243)
T cd00377 171 EAGADGIFVEGLK------------DPEEIRAFAEAPDVPLNV 201 (243)
T ss_pred HcCCCEEEeCCCC------------CHHHHHHHHhcCCCCEEE
Confidence 2378999994222 226777788889999986
No 204
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=48.11 E-value=2.1e+02 Score=32.77 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=72.9
Q ss_pred ceeecCCCcccCCCCChhcHHhHHHHHh-cCCEEEEecc-CChhHHHHHHHH-HHHhCC-----CCceEEEeecChhhhc
Q 006783 434 KSINIPKSNIHFEGLTTKDLMDLEFVAS-HADMVGISFV-RDSCDIAMLRKE-LEKRKV-----QNLGVVLKIETKSGFE 505 (631)
Q Consensus 434 KGINlP~~~l~lp~LTekD~~dl~f~~~-~~D~V~~SFV-~sa~Dv~~lr~~-L~~~~~-----~~~~IiaKIEt~~av~ 505 (631)
=||||--. |.-.+.+.+.++..++ ++.+|..|.- .....+...+.. +. ++. ....||+|+-+++-..
T Consensus 75 fGVNL~~~----~~~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~v~~r~~G~~-~~~~g~~~~~~~ViakVsr~~vAs 149 (444)
T TIGR02814 75 YGVNLIHS----PSDPALEWGLVDLLLRHGVRIVEASAFMQLTPALVRYRAKGLH-RDADGRVVIRNRLIAKVSRPEVAE 149 (444)
T ss_pred eEEEeccc----CCCcccHHHHHHHHHHcCCCEEEeccccCCCcchhhhhhcccc-ccccccccccceEEEecCCHHHHH
Confidence 68887321 1111223455676676 6998887732 222222222210 10 010 1147999998877554
Q ss_pred c---------hHHHHHHh---------hcCCC-CcEEEEecCCcccccChhhHHHHHHHHHHHHHhc--------CCCEE
Q 006783 506 R---------LPHILLEA---------MKSSN-PLGVMIARGDLAVECGWERLADMQEEILSICGAA--------HVPVI 558 (631)
Q Consensus 506 N---------L~eIl~~a---------~~~~~-~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aa--------gkPvi 558 (631)
. ++.+...- +...+ .|.|.+. .|=|-..|---....--.|++.+.+. .+|||
T Consensus 150 ~f~~p~p~~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpVi 228 (444)
T TIGR02814 150 AFMSPAPAHILQKLLAEGRITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVG 228 (444)
T ss_pred HhcCCCcHHHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEE
Confidence 4 12222110 00112 4888776 77776665333333344555443333 46799
Q ss_pred EEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 559 WATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 559 ~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
.|- |+-|...+. .+.+.|||+|.+.
T Consensus 229 AAG---------GI~t~~~va-AAlaLGAdgV~~G 253 (444)
T TIGR02814 229 AAG---------GIGTPEAAA-AAFMLGADFIVTG 253 (444)
T ss_pred EeC---------CCCCHHHHH-HHHHcCCcEEEec
Confidence 876 555554422 3344799999875
No 205
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=47.96 E-value=1.1e+02 Score=34.01 Aligned_cols=102 Identities=18% Similarity=0.108 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhc
Q 006783 474 SCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAA 553 (631)
Q Consensus 474 a~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aa 553 (631)
++.+.++-+.+.+. .+.+..++......+..+.++ .+ |+|.|.|.-..-....+...= -.+.+.+.+++.
T Consensus 117 p~l~~~iv~~~~~~---~V~v~vr~~~~~~~e~a~~l~-ea----Gvd~I~vhgrt~~~~h~~~~~--~~~~i~~~ik~~ 186 (368)
T PRK08649 117 PELITERIAEIRDA---GVIVAVSLSPQRAQELAPTVV-EA----GVDLFVIQGTVVSAEHVSKEG--EPLNLKEFIYEL 186 (368)
T ss_pred HHHHHHHHHHHHhC---eEEEEEecCCcCHHHHHHHHH-HC----CCCEEEEeccchhhhccCCcC--CHHHHHHHHHHC
Confidence 44444444444432 244444554334555455444 33 789999942111111111000 123356677778
Q ss_pred CCCEEEEechhhhhhhCCCCChhhHHhhhhccccCcccccCCc
Q 006783 554 HVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLNKGK 596 (631)
Q Consensus 554 gkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLskG~ 596 (631)
++|||. - ...|.....++.. .|+|+||...|+
T Consensus 187 ~ipVIa-G---------~V~t~e~A~~l~~-aGAD~V~VG~G~ 218 (368)
T PRK08649 187 DVPVIV-G---------GCVTYTTALHLMR-TGAAGVLVGIGP 218 (368)
T ss_pred CCCEEE-e---------CCCCHHHHHHHHH-cCCCEEEECCCC
Confidence 999985 2 2566655555553 799999998665
No 206
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=47.58 E-value=1.6e+02 Score=30.14 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=87.6
Q ss_pred CCCChhcHHhHHH-HHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHh--hcCCCCc
Q 006783 446 EGLTTKDLMDLEF-VAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEA--MKSSNPL 521 (631)
Q Consensus 446 p~LTekD~~dl~f-~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a--~~~~~~D 521 (631)
|..|++|++.+-. +.+ ++..|++ ++..|..+++.|.. .++.+.+=|==|.|-...+.-+.++ +-..|.|
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv----~p~~v~~a~~~l~~---~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAd 85 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCV----NPSYVPLAKELLKG---TEVRICTVVGFPLGASTTDVKLYETKEAIKYGAD 85 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEe----CHHHHHHHHHHcCC---CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 7889999887643 555 4665555 67789999998852 3577777776666665544433322 0012455
Q ss_pred EEEEecCCcccccCh---hhHHHHHHHHHHHHHhc-CCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCcccccC
Q 006783 522 GVMIARGDLAVECGW---ERLADMQEEILSICGAA-HVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLNK 594 (631)
Q Consensus 522 GImIaRGDL~veig~---e~l~~~Qk~Ii~~c~aa-gkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLsk 594 (631)
.|-+ -+.+|. .+...+.++|-..++++ |+|+-+ ++|. +.=+..|+..+... .|||.|=.|.
T Consensus 86 EiDv-----v~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKv---IlE~----~~L~~~ei~~a~~ia~eaGADfvKTsT 153 (211)
T TIGR00126 86 EVDM-----VINIGALKDGNEEVVYDDIRAVVEACAGVLLKV---IIET----GLLTDEEIRKACEICIDAGADFVKTST 153 (211)
T ss_pred EEEe-----ecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 5533 233442 24444555555544443 788765 4442 32344565554444 6999999997
Q ss_pred Ccc----HHHHHHHHHHHHH
Q 006783 595 GKH----VVEAVSTLDKILH 610 (631)
Q Consensus 595 G~y----pveAV~~L~~Il~ 610 (631)
|.. -++.|+.|.+++.
T Consensus 154 Gf~~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 154 GFGAGGATVEDVRLMRNTVG 173 (211)
T ss_pred CCCCCCCCHHHHHHHHHHhc
Confidence 754 3577788877765
No 207
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=47.28 E-value=35 Score=37.23 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=30.8
Q ss_pred HHHHHHhCC--CEEEeecCCCChHHHHHHHHHHHH
Q 006783 186 ISDILKAGA--SIIRINCAHGNPSIWSEIIRRVKT 218 (631)
Q Consensus 186 i~~Li~aGM--dvaRINcAHg~~e~w~~mI~~vR~ 218 (631)
+.+|+++|. |+.=|.++||.-+.-+++|+.||+
T Consensus 102 ~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~ 136 (326)
T PRK05458 102 VDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK 136 (326)
T ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh
Confidence 999999966 999999999999999999999987
No 208
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=46.94 E-value=70 Score=35.30 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcC
Q 006783 475 CDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAH 554 (631)
Q Consensus 475 ~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aag 554 (631)
+....++++.++.| +.+++-+-....++-+.+. + |.+-|+-+++.- -.++..+.+.|
T Consensus 169 e~l~~L~~~~~~~G---l~~~t~v~d~~~~~~l~~~---v------d~lkI~s~~~~n-----------~~LL~~~a~~g 225 (360)
T PRK12595 169 EGLKILKQVADEYG---LAVISEIVNPADVEVALDY---V------DVIQIGARNMQN-----------FELLKAAGRVN 225 (360)
T ss_pred HHHHHHHHHHHHcC---CCEEEeeCCHHHHHHHHHh---C------CeEEECcccccC-----------HHHHHHHHccC
Confidence 34555566665554 5677766666666555443 2 677777555432 25666666778
Q ss_pred CCEEEEechhhhhhhCCC-CChhhHHhhhhc---cccCccccc
Q 006783 555 VPVIWATQVLESLVKFGV-PTRAEITDVASA---RRASCVMLN 593 (631)
Q Consensus 555 kPvi~ATQvLESM~~~~~-PtRAEvtDva~a---~gaD~vmLs 593 (631)
|||++.| |. +|-.|+-.++.. .|.+-++|.
T Consensus 226 kPVilk~---------G~~~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 226 KPVLLKR---------GLSATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred CcEEEeC---------CCCCCHHHHHHHHHHHHHCCCCCEEEE
Confidence 8888744 54 666666665544 355545554
No 209
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=46.77 E-value=36 Score=38.26 Aligned_cols=48 Identities=25% Similarity=0.482 Sum_probs=38.2
Q ss_pred EEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHH
Q 006783 172 HIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTS 219 (631)
Q Consensus 172 kImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a 219 (631)
.+-+-+|+.-.+.+ ++.|+++|+|+.=|.++|+..+...++++.+|+.
T Consensus 143 ~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~ 191 (404)
T PRK06843 143 RVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTK 191 (404)
T ss_pred EEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhh
Confidence 45555665322335 9999999999999999999998888999988873
No 210
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=46.49 E-value=99 Score=33.52 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=52.3
Q ss_pred hhcCCCCCCCCeEEEEecCCCCChH--H-HHHHHHhCCCEEEeecCCC-----ChHHHHHHHHHHHHHHhhcCCceEEEe
Q 006783 160 LLLGPLRHNQTNHIMVTVGQEASES--E-ISDILKAGASIIRINCAHG-----NPSIWSEIIRRVKTSSQMLEMPCQILM 231 (631)
Q Consensus 160 ~l~G~~~~~R~TkImvTlgp~aa~~--~-i~~Li~aGMdvaRINcAHg-----~~e~w~~mI~~vR~a~~~~g~~~~Ilm 231 (631)
.|||... ..+..+.+|++....++ + ++++.+.|.+.+.|-...+ ....+.+-++.||.+.+.+|..+.|++
T Consensus 103 ~LLGg~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~v 181 (352)
T cd03325 103 QLLGGQV-RDRVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGV 181 (352)
T ss_pred HHcCCCc-cceeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 4567543 24566667776533222 2 7778889999999987532 234567778888888888888899999
Q ss_pred cCCC
Q 006783 232 DLAG 235 (631)
Q Consensus 232 DL~G 235 (631)
|--+
T Consensus 182 DaN~ 185 (352)
T cd03325 182 DFHG 185 (352)
T ss_pred ECCC
Confidence 9643
No 211
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=46.45 E-value=3.3e+02 Score=27.54 Aligned_cols=131 Identities=18% Similarity=0.224 Sum_probs=67.2
Q ss_pred hcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecCh------hhh-----cchHHHHHHhhcCC
Q 006783 451 KDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETK------SGF-----ERLPHILLEAMKSS 518 (631)
Q Consensus 451 kD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~------~av-----~NL~eIl~~a~~~~ 518 (631)
++.++++.+++ ++|.|.++-.- ..+...+.+..+..+.+. |+.-|... .|. .+..+++... ...
T Consensus 86 ~~~~~~~~~~~~Ga~~v~iGs~~-~~~~~~~~~i~~~~g~~~--i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~-~~~ 161 (241)
T PRK13585 86 RSAEDAASLLDLGVDRVILGTAA-VENPEIVRELSEEFGSER--VMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRF-EEL 161 (241)
T ss_pred CCHHHHHHHHHcCCCEEEEChHH-hhChHHHHHHHHHhCCCc--EEEEEEeeCCEEEECCCcccCCCCHHHHHHHH-HHc
Confidence 35667777666 79988876432 122233444444433222 33333211 010 1333333322 123
Q ss_pred CCcEEEEecCC-cccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----
Q 006783 519 NPLGVMIARGD-LAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN---- 593 (631)
Q Consensus 519 ~~DGImIaRGD-L~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs---- 593 (631)
|++.|.+---+ =+..-| ..+ +.+-+.|+....||+.+. ++-|..++..+ ...|+++||+.
T Consensus 162 G~~~i~~~~~~~~g~~~g-~~~----~~i~~i~~~~~iPvia~G---------GI~~~~di~~~-~~~Ga~gv~vgsa~~ 226 (241)
T PRK13585 162 GAGSILFTNVDVEGLLEG-VNT----EPVKELVDSVDIPVIASG---------GVTTLDDLRAL-KEAGAAGVVVGSALY 226 (241)
T ss_pred CCCEEEEEeecCCCCcCC-CCH----HHHHHHHHhCCCCEEEeC---------CCCCHHHHHHH-HHcCCCEEEEEHHHh
Confidence 67888873211 111111 111 223455566789999865 56666666663 44699999997
Q ss_pred CCccHHH
Q 006783 594 KGKHVVE 600 (631)
Q Consensus 594 kG~ypve 600 (631)
.|++.++
T Consensus 227 ~~~~~~~ 233 (241)
T PRK13585 227 KGKFTLE 233 (241)
T ss_pred cCCcCHH
Confidence 6777644
No 212
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=46.40 E-value=3e+02 Score=27.14 Aligned_cols=136 Identities=14% Similarity=0.102 Sum_probs=68.5
Q ss_pred HHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcc
Q 006783 453 LMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLA 531 (631)
Q Consensus 453 ~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ 531 (631)
.+.++.+.+ ++|+|.+..-.+.... ...+.++..+ +.+..-+......+.+.++... +|.|.+..-+-+
T Consensus 74 ~~~i~~~~~~g~d~v~vh~~~~~~~~-~~~~~~~~~~---~~~g~~~~~~t~~e~~~~~~~~------~d~i~~~~~~~g 143 (220)
T PRK05581 74 DRYVPDFAKAGADIITFHVEASEHIH-RLLQLIKSAG---IKAGLVLNPATPLEPLEDVLDL------LDLVLLMSVNPG 143 (220)
T ss_pred HHHHHHHHHcCCCEEEEeeccchhHH-HHHHHHHHcC---CEEEEEECCCCCHHHHHHHHhh------CCEEEEEEECCC
Confidence 334555555 7999988887664333 3344455444 3344444322235556666543 377776533222
Q ss_pred cccC-h-hhHHHHHHHHHHHHHhcCC-CEE-EEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHH
Q 006783 532 VECG-W-ERLADMQEEILSICGAAHV-PVI-WATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVS 603 (631)
Q Consensus 532 veig-~-e~l~~~Qk~Ii~~c~aagk-Pvi-~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~ 603 (631)
..-. + +...+..+++-..+..++. |+| ++- |+ |...+..+.. .|+|.+.+. +=+.|.++++
T Consensus 144 ~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~G---------GI-~~~nv~~l~~-~GaD~vvvgSai~~~~d~~~~~~ 212 (220)
T PRK05581 144 FGGQKFIPEVLEKIRELRKLIDERGLDILIEVDG---------GI-NADNIKECAE-AGADVFVAGSAVFGAPDYKEAID 212 (220)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC---------CC-CHHHHHHHHH-cCCCEEEEChhhhCCCCHHHHHH
Confidence 2111 1 1222222333334444333 334 322 22 2233333332 689988876 4467888888
Q ss_pred HHHHHH
Q 006783 604 TLDKIL 609 (631)
Q Consensus 604 ~L~~Il 609 (631)
.+.+++
T Consensus 213 ~~~~~~ 218 (220)
T PRK05581 213 SLRAEL 218 (220)
T ss_pred HHHHHh
Confidence 777654
No 213
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=46.33 E-value=2.2e+02 Score=32.10 Aligned_cols=155 Identities=12% Similarity=0.118 Sum_probs=94.5
Q ss_pred CCChhcHHhHHHHHh--cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecC-hhhhc-chHHHHHHhhcCCCCcE
Q 006783 447 GLTTKDLMDLEFVAS--HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIET-KSGFE-RLPHILLEAMKSSNPLG 522 (631)
Q Consensus 447 ~LTekD~~dl~f~~~--~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt-~~av~-NL~eIl~~a~~~~~~DG 522 (631)
.+|-+|+..|...+. ++|+|-++|-.+.....+.-+.+.... . +.+-+++-. ...++ .++.++... .|.
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~-~-~~~~~~~~~~~~~~~~~~ea~~~a~-----~~~ 92 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKA-G-LFICALIAALARAIKRDIEALLEAG-----VDR 92 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhc-C-cccchhhhhhHHhHHhhHHHHHhCC-----CCE
Confidence 467889988888775 799999988755444444444444221 1 122333322 12222 455555443 454
Q ss_pred --EEEecCCcccccCh----hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc---
Q 006783 523 --VMIARGDLAVECGW----ERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN--- 593 (631)
Q Consensus 523 --ImIaRGDL~veig~----e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs--- 593 (631)
++++=.|+-++..+ +...+.-.+.+..++.+|.++... +|........-..++...+.+.|++++-|.
T Consensus 93 i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~---~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTv 169 (409)
T COG0119 93 IHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFS---AEDATRTDPEFLAEVVKAAIEAGADRINLPDTV 169 (409)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---eeccccCCHHHHHHHHHHHHHcCCcEEEECCCc
Confidence 88898999888655 677788888999999999887752 333333333334444444554689999986
Q ss_pred CCccHHHHHHHHHHHHHH
Q 006783 594 KGKHVVEAVSTLDKILHI 611 (631)
Q Consensus 594 kG~ypveAV~~L~~Il~r 611 (631)
-+-.|-+.-..+..+.+.
T Consensus 170 G~~~P~~~~~~i~~l~~~ 187 (409)
T COG0119 170 GVATPNEVADIIEALKAN 187 (409)
T ss_pred CccCHHHHHHHHHHHHHh
Confidence 344565555555444443
No 214
>PRK15447 putative protease; Provisional
Probab=46.26 E-value=1.1e+02 Score=32.63 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=69.8
Q ss_pred hcHHhHHHHH-h-cCCEEEEeccC-------ChhHHHHHHHHHHHhCCCCceE-EEee-cChhhhcchHHHHHHhhcCCC
Q 006783 451 KDLMDLEFVA-S-HADMVGISFVR-------DSCDIAMLRKELEKRKVQNLGV-VLKI-ETKSGFERLPHILLEAMKSSN 519 (631)
Q Consensus 451 kD~~dl~f~~-~-~~D~V~~SFV~-------sa~Dv~~lr~~L~~~~~~~~~I-iaKI-Et~~av~NL~eIl~~a~~~~~ 519 (631)
...+++-.++ + +||.|-++... +.+++.++.+.+.+.| ..+.+ +..| -+.+-++.+.+++.. +
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~g-kkvyva~p~i~~~~~e~~~l~~~l~~-----~ 88 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAG-KEVVLSTLALVEAPSELKELRRLVEN-----G 88 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcC-CEEEEEecccccCHHHHHHHHHHHhc-----C
Confidence 5566666555 4 79999998432 6688888888888876 44444 3344 456666777777654 4
Q ss_pred CcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEech----------hhhh-----hhCCCCChhhHHhhh
Q 006783 520 PLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQV----------LESL-----VKFGVPTRAEITDVA 582 (631)
Q Consensus 520 ~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQv----------LESM-----~~~~~PtRAEvtDva 582 (631)
+|+|+|+ |+|+ + ..+++.++|+++.||+ +..+ +-+.-=+..||.++.
T Consensus 89 ~~~v~v~--d~g~------l--------~~~~e~~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELsl~eI~~i~ 150 (301)
T PRK15447 89 EFLVEAN--DLGA------V--------RLLAERGLPFVAGPALNCYNAATLALLARLGATRWCMPVELSRDWLANLL 150 (301)
T ss_pred CCEEEEe--CHHH------H--------HHHHhcCCCEEEecccccCCHHHHHHHHHcCCcEEEECCcCCHHHHHHHH
Confidence 6888874 3332 2 2223349999999987 3332 334444567777764
No 215
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=46.05 E-value=37 Score=39.10 Aligned_cols=46 Identities=22% Similarity=0.513 Sum_probs=37.6
Q ss_pred EEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHH
Q 006783 173 IMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKT 218 (631)
Q Consensus 173 ImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~ 218 (631)
+=+-+|+...+.+ ++.|+++|.|+.=|.|+||....-.++|+.||+
T Consensus 239 vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~ 285 (505)
T PLN02274 239 VGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK 285 (505)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 3346776545556 999999999999999999998877778888887
No 216
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=45.94 E-value=3.5e+02 Score=29.69 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=18.7
Q ss_pred CCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 554 HVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 554 gkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
++|+|... ++=+- .|++.+ .|||+|++.
T Consensus 261 ~ipvia~G---------GI~~~---~dv~k~l~~GAd~v~ig 290 (352)
T PRK05437 261 DLPIIASG---------GIRNG---LDIAKALALGADAVGMA 290 (352)
T ss_pred CCeEEEEC---------CCCCH---HHHHHHHHcCCCEEEEh
Confidence 68888644 33343 455544 699999997
No 217
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=45.78 E-value=67 Score=35.89 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=60.3
Q ss_pred CceeecCCCcccCCCCChhcHHhHHHHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHH
Q 006783 433 GKSINIPKSNIHFEGLTTKDLMDLEFVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILL 512 (631)
Q Consensus 433 ~KGINlP~~~l~lp~LTekD~~dl~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~ 512 (631)
.+|+-=|....++|.+.. -||+=--.+..-+..+...+.++. ....|+.-==+.+|-..-.+|+.
T Consensus 119 ~eGlfd~~~k~~lP~~p~--------------~I~viTs~~gAa~~D~~~~~~~r~-p~~~~~~~~~~vQG~~A~~~i~~ 183 (438)
T PRK00286 119 AEGLFDPERKKPLPFFPK--------------RIGVITSPTGAAIRDILTVLRRRF-PLVEVIIYPTLVQGEGAAASIVA 183 (438)
T ss_pred HCCCCChhhcCCCCCCCC--------------EEEEEeCCccHHHHHHHHHHHhcC-CCCeEEEecCcCcCccHHHHHHH
Confidence 445544555566666532 256555567777888888787764 22233322223344444444432
Q ss_pred ---HhhcCCCCcEEEEecCCcccccChhhHHHH-HHHHHHHHHhcCCCEEEE
Q 006783 513 ---EAMKSSNPLGVMIARGDLAVECGWERLADM-QEEILSICGAAHVPVIWA 560 (631)
Q Consensus 513 ---~a~~~~~~DGImIaRGDL~veig~e~l~~~-Qk~Ii~~c~aagkPvi~A 560 (631)
.+ ...+.|.|+|+||==+. |+|... .+.+..+.-+..+|||.|
T Consensus 184 al~~~-~~~~~Dviii~RGGGS~----eDL~~Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 184 AIERA-NARGEDVLIVARGGGSL----EDLWAFNDEAVARAIAASRIPVISA 230 (438)
T ss_pred HHHHh-cCCCCCEEEEecCCCCH----HHhhccCcHHHHHHHHcCCCCEEEe
Confidence 22 11225999999994322 333333 245566667789999977
No 218
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=45.70 E-value=2.6e+02 Score=29.37 Aligned_cols=123 Identities=19% Similarity=0.212 Sum_probs=68.3
Q ss_pred hcCCEEEEeccC-----------ChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEE----E
Q 006783 461 SHADMVGISFVR-----------DSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVM----I 525 (631)
Q Consensus 461 ~~~D~V~~SFV~-----------sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGIm----I 525 (631)
.++|+|-+.|-. ..+-+..+.+.+++. .++.|++||=-.---....+++.... ..+.|||. +
T Consensus 123 ~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~--~~~Pv~vKL~p~~~~~~~~~~~~~~~-~~g~~gi~~~Nt~ 199 (295)
T PF01180_consen 123 AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREA--VDIPVFVKLSPNFTDIEPFAIAAELA-ADGADGIVAINTF 199 (295)
T ss_dssp HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHH--HSSEEEEEE-STSSCHHHHHHHHHHH-THTECEEEE---E
T ss_pred CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhc--cCCCEEEEecCCCCchHHHHHHHHhh-ccceeEEEEecCc
Confidence 369999886531 122233333444433 36889999954111111112222211 23789998 5
Q ss_pred ecCC-cccc-------------cChhhHHHHHHHHHHHHHhcC--CCEEEEechhhhhhhCCCCChhhHHhhhhc--ccc
Q 006783 526 ARGD-LAVE-------------CGWERLADMQEEILSICGAAH--VPVIWATQVLESLVKFGVPTRAEITDVASA--RRA 587 (631)
Q Consensus 526 aRGD-L~ve-------------ig~e~l~~~Qk~Ii~~c~aag--kPvi~ATQvLESM~~~~~PtRAEvtDva~a--~ga 587 (631)
..++ +-.+ -|..-.+.+.+.+-..+++.+ .|+|-.+ |+-|-. |+... .||
T Consensus 200 ~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~G---------GI~s~~---da~e~l~aGA 267 (295)
T PF01180_consen 200 GQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVG---------GIHSGE---DAIEFLMAGA 267 (295)
T ss_dssp EEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEES---------S--SHH---HHHHHHHHTE
T ss_pred cCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeC---------CcCCHH---HHHHHHHhCC
Confidence 5555 2222 122455777888877778777 8888655 455544 44444 699
Q ss_pred Cccccc-----CCccH
Q 006783 588 SCVMLN-----KGKHV 598 (631)
Q Consensus 588 D~vmLs-----kG~yp 598 (631)
|+|++. +|+..
T Consensus 268 ~~Vqv~Sal~~~Gp~~ 283 (295)
T PF01180_consen 268 SAVQVCSALIYRGPGV 283 (295)
T ss_dssp SEEEESHHHHHHGTTH
T ss_pred CHheechhhhhcCcHH
Confidence 999997 68765
No 219
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=45.61 E-value=99 Score=29.34 Aligned_cols=95 Identities=16% Similarity=0.033 Sum_probs=52.7
Q ss_pred CEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHH
Q 006783 464 DMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQ 543 (631)
Q Consensus 464 D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Q 543 (631)
-++..|| +.+.+..+++.. .++.+..-++..........+... .+++++.+... ...
T Consensus 93 ~v~i~s~--~~~~l~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~------------~~~ 149 (189)
T cd08556 93 RVVVSSF--DHEALRALKELD-----PEVPTGLLVDKPPLDPLLAELARA----LGADAVNPHYK------------LLT 149 (189)
T ss_pred CEEEEeC--CHHHHHHHHHhC-----CCCcEEEEeecCcccchhhhHHHh----cCCeEEccChh------------hCC
Confidence 4555676 566666665543 234444444443332221122222 24566655322 156
Q ss_pred HHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCcccc
Q 006783 544 EEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVML 592 (631)
Q Consensus 544 k~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmL 592 (631)
.++++.|+++|++|++-| ..+.+++. .+...|+|+|+-
T Consensus 150 ~~~i~~~~~~g~~v~~wt----------vn~~~~~~-~~~~~GVdgI~T 187 (189)
T cd08556 150 PELVRAAHAAGLKVYVWT----------VNDPEDAR-RLLALGVDGIIT 187 (189)
T ss_pred HHHHHHHHHcCCEEEEEc----------CCCHHHHH-HHHHCCCCEEec
Confidence 789999999999998777 23333333 344469999874
No 220
>PRK14057 epimerase; Provisional
Probab=45.17 E-value=1.8e+02 Score=30.82 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=81.4
Q ss_pred hHH-HHHhcCCEEEEeccCChhHHHHHHHHHHHhCCC--------CceEEEeecChhhhcchHHHHHHhhcCCCCcEEEE
Q 006783 455 DLE-FVASHADMVGISFVRDSCDIAMLRKELEKRKVQ--------NLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMI 525 (631)
Q Consensus 455 dl~-f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~--------~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImI 525 (631)
.++ |+..++|+|.+= ++...++.+.-+.+++.|.+ ..+|..+-+| -++.+..++... |.|+|
T Consensus 90 ~i~~~~~aGad~It~H-~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~v------D~VLv 160 (254)
T PRK14057 90 AAQACVKAGAHCITLQ-AEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDV------EVIQL 160 (254)
T ss_pred HHHHHHHhCCCEEEEe-eccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhC------CEEEE
Confidence 344 455589999886 45456677777778877742 4789999999 577888888754 99999
Q ss_pred ecCCcccccCh---hhHHHHHHHHHH---HHHhcCCCE-EEEechhhhhhhCCCCChhhHHhhhhccccCccccc----C
Q 006783 526 ARGDLAVECGW---ERLADMQEEILS---ICGAAHVPV-IWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----K 594 (631)
Q Consensus 526 aRGDL~veig~---e~l~~~Qk~Ii~---~c~aagkPv-i~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----k 594 (631)
++|+-|+ .-++..-++|-+ .-...|..+ |.. . |--+..-+. -.-..|||.+... +
T Consensus 161 ----MtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeV--------D-GGI~~~ti~-~l~~aGad~~V~GSalF~ 226 (254)
T PRK14057 161 ----LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVI--------D-GSLTQDQLP-SLIAQGIDRVVSGSALFR 226 (254)
T ss_pred ----EEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEE--------E-CCCCHHHHH-HHHHCCCCEEEEChHhhC
Confidence 5677666 223333333322 223444333 321 1 222222211 2233688887775 3
Q ss_pred CccHHHHHHHHHHHHHHHh
Q 006783 595 GKHVVEAVSTLDKILHINT 613 (631)
Q Consensus 595 G~ypveAV~~L~~Il~r~e 613 (631)
.+-+.++++.|.++..+..
T Consensus 227 ~~d~~~~i~~l~~~~~~~~ 245 (254)
T PRK14057 227 DDRLVENTRSWRAMFKVAG 245 (254)
T ss_pred CCCHHHHHHHHHHHHhhcC
Confidence 4457888888877765543
No 221
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=44.67 E-value=1.9e+02 Score=31.65 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=70.1
Q ss_pred hhcHHhHHHHHh--cCCEEEEecc-CChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEe
Q 006783 450 TKDLMDLEFVAS--HADMVGISFV-RDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIA 526 (631)
Q Consensus 450 ekD~~dl~f~~~--~~D~V~~SFV-~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIa 526 (631)
....+..+.+++ ++-++..||- ...++|..++. .| +.++.++=|..--.... +-|.|+|+.-
T Consensus 90 ~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~----~g---~~v~~~v~~~~~A~~~~--------~~G~d~vI~~ 154 (336)
T COG2070 90 NAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKA----AG---IKVIHSVITVREALKAE--------RAGADAVIAQ 154 (336)
T ss_pred cchHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHH----cC---CeEEEEeCCHHHHHHHH--------hCCCCEEEec
Confidence 334444566665 5888999999 47777777765 23 56888877755432222 2268999997
Q ss_pred cCCcccccCh----hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCcccc
Q 006783 527 RGDLAVECGW----ERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVML 592 (631)
Q Consensus 527 RGDL~veig~----e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmL 592 (631)
-.+=|-+.|. ..+...-.+|...+.. +|||.|-- +-+...+. .|.+.|||+|-.
T Consensus 155 g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~--iPViAAGG---------I~dg~~i~-AAlalGA~gVq~ 212 (336)
T COG2070 155 GAEAGGHRGGVDLEVSTFALVPEVVDAVDG--IPVIAAGG---------IADGRGIA-AALALGADGVQM 212 (336)
T ss_pred CCcCCCcCCCCCCCccHHHHHHHHHHHhcC--CCEEEecC---------ccChHHHH-HHHHhccHHHHh
Confidence 7777777662 3334444555544444 89998874 33333322 333357776655
No 222
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=44.42 E-value=38 Score=34.93 Aligned_cols=63 Identities=22% Similarity=0.338 Sum_probs=36.3
Q ss_pred cchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc
Q 006783 505 ERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA 584 (631)
Q Consensus 505 ~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a 584 (631)
+.+.+++..+ |.|+|||| |=+++. +.+....+.|-+ +.. .+||+. .|+..+.- .
T Consensus 15 ~~~~~~~~~~----gtdai~vG-GS~~v~---~~~~~~~~~ik~-~~~-~~Pvil------------fp~~~~~i----~ 68 (219)
T cd02812 15 EEIAKLAEES----GTDAIMVG-GSDGVS---STLDNVVRLIKR-IRR-PVPVIL------------FPSNPEAV----S 68 (219)
T ss_pred HHHHHHHHhc----CCCEEEEC-Cccchh---hhHHHHHHHHHH-hcC-CCCEEE------------eCCCcccc----C
Confidence 3466666655 78999999 555554 233333222222 222 699997 56554411 2
Q ss_pred cccCccccc
Q 006783 585 RRASCVMLN 593 (631)
Q Consensus 585 ~gaD~vmLs 593 (631)
.+||++++.
T Consensus 69 ~~aDa~l~~ 77 (219)
T cd02812 69 PGADAYLFP 77 (219)
T ss_pred cCCCEEEEE
Confidence 589998763
No 223
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=44.27 E-value=61 Score=34.28 Aligned_cols=70 Identities=21% Similarity=0.112 Sum_probs=46.0
Q ss_pred CCcEEEE-ecCCccc--ccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc--
Q 006783 519 NPLGVMI-ARGDLAV--ECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN-- 593 (631)
Q Consensus 519 ~~DGImI-aRGDL~v--eig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs-- 593 (631)
|+||||| --||.-. +.+.+.++.+-.-+-...+....|+++ ||| .=.--+--++|.|.|+|.|=.+
T Consensus 41 GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~Gv--nvL-------~nd~~aal~iA~a~ga~FIRv~~~ 111 (257)
T TIGR00259 41 GVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGI--NVL-------RNDAVAALAIAMAVGAKFIRVNVL 111 (257)
T ss_pred CCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeee--eee-------cCCCHHHHHHHHHhCCCEEEEccE
Confidence 8999999 4456544 777777776655555555777899886 666 1111224468888888888775
Q ss_pred CCcc
Q 006783 594 KGKH 597 (631)
Q Consensus 594 kG~y 597 (631)
.|-|
T Consensus 112 ~g~~ 115 (257)
T TIGR00259 112 TGVY 115 (257)
T ss_pred eeeE
Confidence 4444
No 224
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=44.06 E-value=94 Score=32.19 Aligned_cols=62 Identities=10% Similarity=0.183 Sum_probs=42.2
Q ss_pred CCeEEEEec--CCCC----Ch-H--H-HHHHHHhCCC--EEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEE
Q 006783 169 QTNHIMVTV--GQEA----SE-S--E-ISDILKAGAS--IIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQIL 230 (631)
Q Consensus 169 R~TkImvTl--gp~a----a~-~--~-i~~Li~aGMd--vaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~Il 230 (631)
..+++++++ +... .. . . +++.++.|.+ -+|.|....+...+.+.+..|+++..+.|.|+.|.
T Consensus 69 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~ 142 (258)
T TIGR01949 69 KDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAM 142 (258)
T ss_pred CCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 356678887 3211 12 1 2 9999999998 56777665444455567777777778889998774
No 225
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=44.00 E-value=1.1e+02 Score=34.75 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred hhcHHhHHHHHh-cCCEEEE--eccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEe
Q 006783 450 TKDLMDLEFVAS-HADMVGI--SFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIA 526 (631)
Q Consensus 450 ekD~~dl~f~~~-~~D~V~~--SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIa 526 (631)
+.|+..++...+ ++|+|.+ |-=+|.-.+..+ +++++.-.+.-.|---.=|.+=.+|| +.+ |+||+=|+
T Consensus 250 e~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemi-k~iK~~yP~l~ViaGNVVT~~qa~nL---I~a-----GaDgLrVG 320 (503)
T KOG2550|consen 250 DDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMI-KYIKETYPDLQIIAGNVVTKEQAANL---IAA-----GADGLRVG 320 (503)
T ss_pred cchhHHHHHhhhcCCcEEEEecCCCcchhHHHHH-HHHHhhCCCceeeccceeeHHHHHHH---HHc-----cCceeEec
Q ss_pred cCCcccccChhhH------HHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc-----
Q 006783 527 RGDLAVECGWERL------ADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN----- 593 (631)
Q Consensus 527 RGDL~veig~e~l------~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs----- 593 (631)
=|-=++-+--+.+ .-+--++.+.+++.|+|||- .---.-+.+++.| .||+.||+.
T Consensus 321 MGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviA------------DGGiq~~Ghi~KAl~lGAstVMmG~lLAg 388 (503)
T KOG2550|consen 321 MGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIA------------DGGIQNVGHVVKALGLGASTVMMGGLLAG 388 (503)
T ss_pred cccCceeeeceeeeccCCcccchhhHHHHHHhcCCceee------------cCCcCccchhHhhhhcCchhheecceeee
Q ss_pred ----CCcc
Q 006783 594 ----KGKH 597 (631)
Q Consensus 594 ----kG~y 597 (631)
-|.|
T Consensus 389 tTEapGey 396 (503)
T KOG2550|consen 389 TTEAPGEY 396 (503)
T ss_pred eeccCcce
No 226
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=43.99 E-value=40 Score=31.27 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=33.2
Q ss_pred hhhhcccCCCCcEEEeCCeEEEEEEEEeCCEEEEEEEecCCCCceecCCc
Q 006783 385 SCLFDSVKPGEPIAFDDGKIWGLIQGASISEIVVSITHAGPRGTKLGSGK 434 (631)
Q Consensus 385 p~l~~~v~~Gd~I~iDDGkI~~~V~~v~~~~i~~~V~~a~~~Gg~L~s~K 434 (631)
.++.+++++||+|..--|-+ ++|.+++++.+.+++. .|.+++=.|
T Consensus 33 ~~m~~~Lk~GD~VvT~gGi~-G~V~~I~d~~v~leia----~gv~i~~~r 77 (109)
T PRK05886 33 IDLHESLQPGDRVHTTSGLQ-ATIVGITDDTVDLEIA----PGVVTTWMK 77 (109)
T ss_pred HHHHHhcCCCCEEEECCCeE-EEEEEEeCCEEEEEEC----CCeEEEEEh
Confidence 47889999999999877755 5677898888887763 355554333
No 227
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=43.97 E-value=49 Score=35.89 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=49.6
Q ss_pred HhhcCCCCCCCCeEEEEecCCCCChH--H-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCC
Q 006783 159 ELLLGPLRHNQTNHIMVTVGQEASES--E-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAG 235 (631)
Q Consensus 159 ~~l~G~~~~~R~TkImvTlgp~aa~~--~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~G 235 (631)
-.|||.. .++.....|+|....++ + .+++++.|-..+.|-+...+++.-.+.++.||+ .+|..+.|++|--+
T Consensus 121 ~~LlGg~--~~~v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~---~~g~~~~l~vDaN~ 195 (355)
T cd03321 121 AKLLGGN--PRPVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQ---AVGDGVGLMVDYNQ 195 (355)
T ss_pred HHHhCCC--CCCeeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHH---hhCCCCEEEEeCCC
Confidence 3466764 24567777776533222 2 888899999999998876666655566666654 57888999999643
No 228
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=43.91 E-value=92 Score=32.99 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=43.7
Q ss_pred hcCCCCCCCCeEEEEecCCCCChH--H-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCC
Q 006783 161 LLGPLRHNQTNHIMVTVGQEASES--E-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAG 235 (631)
Q Consensus 161 l~G~~~~~R~TkImvTlgp~aa~~--~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~G 235 (631)
|+|..+ .+.++.++++....++ + ++++.+.|-+.+-||+..+. .+.++.|+...+.+| .+.|++|--+
T Consensus 116 l~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~~~----~~d~~~v~~lr~~~g-~~~l~vD~n~ 186 (316)
T cd03319 116 WGGGAP--RPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGGDL----EDDIERIRAIREAAP-DARLRVDANQ 186 (316)
T ss_pred cCCCCC--CCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCh----hhHHHHHHHHHHhCC-CCeEEEeCCC
Confidence 456533 3445666776532222 2 78888999999999996543 334555555555677 7889999753
No 229
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=43.81 E-value=2.7e+02 Score=29.48 Aligned_cols=79 Identities=24% Similarity=0.225 Sum_probs=47.8
Q ss_pred CCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----C
Q 006783 519 NPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----K 594 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----k 594 (631)
|++.||.-=.-.|-..|..+ ++..+.|.+ +.++|||+ ..++=|.+++. .++..|+|+|+++ +
T Consensus 144 G~~~vmPlg~pIGsg~Gi~~-~~~I~~I~e---~~~vpVI~---------egGI~tpeda~-~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 144 GCAAVMPLGSPIGSGQGLLN-PYNLRIIIE---RADVPVIV---------DAGIGTPSDAA-QAMELGADAVLLNTAIAK 209 (248)
T ss_pred CCCEeCCCCcCCCCCCCCCC-HHHHHHHHH---hCCCcEEE---------eCCCCCHHHHH-HHHHcCCCEEEEChHhcC
Confidence 45666552122333345444 444444433 35899997 44666654422 2333799999998 7
Q ss_pred CccHHHHHHHHHHHHHH
Q 006783 595 GKHVVEAVSTLDKILHI 611 (631)
Q Consensus 595 G~ypveAV~~L~~Il~r 611 (631)
++.|+.-.+.+..-+..
T Consensus 210 a~dP~~ma~af~~Av~a 226 (248)
T cd04728 210 AKDPVAMARAFKLAVEA 226 (248)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78898887777776664
No 230
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=43.61 E-value=1.9e+02 Score=30.75 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=47.4
Q ss_pred CCcEEEEecCCccccc---ChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhH---HhhhhccccCcccc
Q 006783 519 NPLGVMIARGDLAVEC---GWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEI---TDVASARRASCVML 592 (631)
Q Consensus 519 ~~DGImIaRGDL~vei---g~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEv---tDva~a~gaD~vmL 592 (631)
|++||++. | .+-|. ..++-.++.+..+..+ +..+||+..+ +..+-.|. ...|...|+|++|+
T Consensus 34 Gv~gi~v~-G-stGE~~~Ls~~Er~~l~~~~~~~~-~g~~pvi~gv---------~~~~t~~ai~~a~~A~~~Gad~v~v 101 (294)
T TIGR02313 34 GSHAISVG-G-TSGEPGSLTLEERKQAIENAIDQI-AGRIPFAPGT---------GALNHDETLELTKFAEEAGADAAMV 101 (294)
T ss_pred CCCEEEEC-c-cCcccccCCHHHHHHHHHHHHHHh-CCCCcEEEEC---------CcchHHHHHHHHHHHHHcCCCEEEE
Confidence 78999984 2 22232 2344444444444433 2457888644 23333333 33444479999999
Q ss_pred c----CCccHHHHHHHHHHHHHHH
Q 006783 593 N----KGKHVVEAVSTLDKILHIN 612 (631)
Q Consensus 593 s----kG~ypveAV~~L~~Il~r~ 612 (631)
. ..+-.-+.++....|+...
T Consensus 102 ~pP~y~~~~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 102 IVPYYNKPNQEALYDHFAEVADAV 125 (294)
T ss_pred cCccCCCCCHHHHHHHHHHHHHhc
Confidence 7 3344567778888888764
No 231
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=43.53 E-value=39 Score=31.00 Aligned_cols=36 Identities=17% Similarity=0.387 Sum_probs=29.1
Q ss_pred hhhhcccCCCCcEEEeCCeEEEEEEEEeCCEEEEEEE
Q 006783 385 SCLFDSVKPGEPIAFDDGKIWGLIQGASISEIVVSIT 421 (631)
Q Consensus 385 p~l~~~v~~Gd~I~iDDGkI~~~V~~v~~~~i~~~V~ 421 (631)
.++.+.+++||+|..-.|-+ ++|.+++++.+.+++.
T Consensus 47 ~~~~~~Lk~Gd~VvT~gGi~-G~Vv~i~~~~v~lei~ 82 (106)
T PRK05585 47 KKMLSSLAKGDEVVTNGGII-GKVTKVSEDFVIIELN 82 (106)
T ss_pred HHHHHhcCCCCEEEECCCeE-EEEEEEeCCEEEEEEC
Confidence 47899999999999877755 5677788888887763
No 232
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=43.46 E-value=55 Score=33.26 Aligned_cols=100 Identities=14% Similarity=0.195 Sum_probs=55.9
Q ss_pred CCCCccce-ecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhh--cccCCCCcEEE--eCCeEEEEEEEEeCCEE
Q 006783 342 VPAVEPFI-RLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLF--DSVKPGEPIAF--DDGKIWGLIQGASISEI 416 (631)
Q Consensus 342 ~p~~~~~i-~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~--~~v~~Gd~I~i--DDGkI~~~V~~v~~~~i 416 (631)
+|..|..+ -+++||...++-...... + .........++...|- ..+++|+++++ +||.+.++|++++++.|
T Consensus 42 ipglE~aL~G~~~Gd~~~v~l~peeAy---G-e~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V 117 (196)
T PRK10737 42 ISGLETALEGHEVGDKFDVAVGANDAY---G-QYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHV 117 (196)
T ss_pred hHHHHHHHcCCCCCCEEEEEEChHHhc---C-CCChHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEE
Confidence 34334433 578999988875321110 0 0001123333433432 35899999987 48888999999999988
Q ss_pred EEEEEecCCCCceecCCceeecCCCcccCCCCChhc
Q 006783 417 VVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKD 452 (631)
Q Consensus 417 ~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD 452 (631)
++---| - -+.|-++|--.-+.+-.-|+++
T Consensus 118 ~vD~NH------P-LAG~~L~F~veV~~vr~at~eE 146 (196)
T PRK10737 118 VVDGNH------M-LAGQNLKFNVEVVAIREATEEE 146 (196)
T ss_pred EEECCC------c-CCCCEEEEEEEEEEeccCCHHH
Confidence 765433 1 2445555543334444445444
No 233
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=43.45 E-value=3.7e+02 Score=27.36 Aligned_cols=145 Identities=10% Similarity=0.069 Sum_probs=84.2
Q ss_pred hHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEE-ee--c---------------ChhhhcchHHHHHHhh
Q 006783 455 DLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVL-KI--E---------------TKSGFERLPHILLEAM 515 (631)
Q Consensus 455 dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~Iia-KI--E---------------t~~av~NL~eIl~~a~ 515 (631)
.++.+.+ +.|.|-+.+ ....++.++++.|++.|. .+.+ -+ . .....+.+.+.+..+
T Consensus 20 ~l~~~a~~Gf~~VEl~~-~~~~~~~~~~~~l~~~gl---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a- 94 (258)
T PRK09997 20 RFEKAAQCGFRGVEFMF-PYDYDIEELKQVLASNKL---EHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYA- 94 (258)
T ss_pred HHHHHHHhCCCEEEEcC-CCCCCHHHHHHHHHHcCC---cEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHH-
Confidence 3666666 799999866 334688999999998873 2321 11 0 012345567666554
Q ss_pred cCCCCcEEEEecCCccccc----ChhhHHHHHHHHHHHHHhcCCCEEEEec-hhhhhhhCCCCChhhHHhhhhccccCcc
Q 006783 516 KSSNPLGVMIARGDLAVEC----GWERLADMQEEILSICGAAHVPVIWATQ-VLESLVKFGVPTRAEITDVASARRASCV 590 (631)
Q Consensus 516 ~~~~~DGImIaRGDL~vei----g~e~l~~~Qk~Ii~~c~aagkPvi~ATQ-vLESM~~~~~PtRAEvtDva~a~gaD~v 590 (631)
+.-|...|.+..|...-.. .++.+.+.-+++...+++.|+.+.+=+. ..| ...+..-|.++.-++....+.+.+
T Consensus 95 ~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~-~~~~~~~~~~~~~~ll~~v~~~~v 173 (258)
T PRK09997 95 RALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFD-IPGFHLTGTRQALKLIDDVGCCNL 173 (258)
T ss_pred HHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcC-CCCCccCCHHHHHHHHHHhCCCCE
Confidence 2335667776656542222 2355666667888888889988776220 110 011234556665556655666666
Q ss_pred ccc--------CCccHHHHHHHH
Q 006783 591 MLN--------KGKHVVEAVSTL 605 (631)
Q Consensus 591 mLs--------kG~ypveAV~~L 605 (631)
.|. .|..|.++++.+
T Consensus 174 ~l~~D~~h~~~~g~~~~~~~~~~ 196 (258)
T PRK09997 174 KIQYDIYHMQRMEGELTNTMTQW 196 (258)
T ss_pred EEEeEHHHhhhcCCcHHHHHHHh
Confidence 664 366676666553
No 234
>PRK04302 triosephosphate isomerase; Provisional
Probab=43.30 E-value=3.7e+02 Score=27.21 Aligned_cols=131 Identities=19% Similarity=0.141 Sum_probs=70.3
Q ss_pred HHHHHh-cCCEEEEeccC---ChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEec-CCc
Q 006783 456 LEFVAS-HADMVGISFVR---DSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIAR-GDL 530 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV~---sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaR-GDL 530 (631)
++.+.+ ++|+|.++.-+ ..+++..+.+...+.| +.+|.-+-+ .+.+..+. ..++|-|-+-+ +-.
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~G---l~~I~~v~~---~~~~~~~~-----~~~~~~I~~~p~~~i 146 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLG---LESVVCVNN---PETSAAAA-----ALGPDYVAVEPPELI 146 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCC---CeEEEEcCC---HHHHHHHh-----cCCCCEEEEeCcccc
Confidence 455555 79999999853 3344444444444443 555544444 22333322 12456665544 334
Q ss_pred ccccChh-hHHHHHHHHHHHHHhc--CCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHH
Q 006783 531 AVECGWE-RLADMQEEILSICGAA--HVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVS 603 (631)
Q Consensus 531 ~veig~e-~l~~~Qk~Ii~~c~aa--gkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~ 603 (631)
|...+.. ..++.-+++++..++. ++|++..- ++=+..++. .+...|+|+|... +-+.|.+.++
T Consensus 147 gt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~Gg---------gI~~~e~~~-~~~~~gadGvlVGsa~l~~~~~~~~~~ 216 (223)
T PRK04302 147 GTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGA---------GISTGEDVK-AALELGADGVLLASGVVKAKDPEAALR 216 (223)
T ss_pred ccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEEC---------CCCCHHHHH-HHHcCCCCEEEEehHHhCCcCHHHHHH
Confidence 4433311 2344445566666653 68888632 343443333 3445799999986 6677777766
Q ss_pred HHHH
Q 006783 604 TLDK 607 (631)
Q Consensus 604 ~L~~ 607 (631)
-+..
T Consensus 217 ~~~~ 220 (223)
T PRK04302 217 DLVS 220 (223)
T ss_pred HHHh
Confidence 5543
No 235
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=43.28 E-value=2e+02 Score=30.77 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=45.2
Q ss_pred CCcEEEEecCCc--ccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhh---hhccccCccccc
Q 006783 519 NPLGVMIARGDL--AVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDV---ASARRASCVMLN 593 (631)
Q Consensus 519 ~~DGImIaRGDL--~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDv---a~a~gaD~vmLs 593 (631)
|++||+|. |=- ...+..++-.++.+...+.+ +-.+|||+-+ +..+-.|..+. |...|+|++|+.
T Consensus 42 Gv~Gi~v~-GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv---------~~~~t~~ai~~a~~A~~~Gad~vlv~ 110 (309)
T cd00952 42 GVDGILTM-GTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGA---------TTLNTRDTIARTRALLDLGADGTMLG 110 (309)
T ss_pred CCCEEEEC-cccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEe---------ccCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 78999984 111 11122344444444444444 3458888644 22333344443 333699999987
Q ss_pred C----CccHHHHHHHHHHHHHHH
Q 006783 594 K----GKHVVEAVSTLDKILHIN 612 (631)
Q Consensus 594 k----G~ypveAV~~L~~Il~r~ 612 (631)
- .+-.-+.++....|+...
T Consensus 111 ~P~y~~~~~~~l~~yf~~va~a~ 133 (309)
T cd00952 111 RPMWLPLDVDTAVQFYRDVAEAV 133 (309)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhC
Confidence 2 222456677777777654
No 236
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.12 E-value=87 Score=33.04 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCC
Q 006783 477 IAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVP 556 (631)
Q Consensus 477 v~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkP 556 (631)
++.++++.++.| +.+++-+-+.+.++-+.+ . +|.+-|+-+++. |-.++..+.+.|||
T Consensus 68 l~~L~~~~~~~G---l~~~Tev~d~~~v~~~~e---~------vdilqIgs~~~~-----------n~~LL~~va~tgkP 124 (250)
T PRK13397 68 IRYLHEVCQEFG---LLSVSEIMSERQLEEAYD---Y------LDVIQVGARNMQ-----------NFEFLKTLSHIDKP 124 (250)
T ss_pred HHHHHHHHHHcC---CCEEEeeCCHHHHHHHHh---c------CCEEEECccccc-----------CHHHHHHHHccCCe
Confidence 444455444443 566666666665554433 1 377777755543 35567777778888
Q ss_pred EEEEechhhhhhhCC-CCChhhHHhhhhc---cccCccccc
Q 006783 557 VIWATQVLESLVKFG-VPTRAEITDVASA---RRASCVMLN 593 (631)
Q Consensus 557 vi~ATQvLESM~~~~-~PtRAEvtDva~a---~gaD~vmLs 593 (631)
|++ |+| .+|-.|+-.++.- .|..-++|-
T Consensus 125 Vil---------k~G~~~t~~e~~~A~e~i~~~Gn~~i~L~ 156 (250)
T PRK13397 125 ILF---------KRGLMATIEEYLGALSYLQDTGKSNIILC 156 (250)
T ss_pred EEE---------eCCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 887 446 6777776666554 366556665
No 237
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=43.09 E-value=1.1e+02 Score=32.09 Aligned_cols=52 Identities=21% Similarity=0.322 Sum_probs=34.9
Q ss_pred HHHHHHhCCCE--EEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCe
Q 006783 186 ISDILKAGASI--IRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPK 237 (631)
Q Consensus 186 i~~Li~aGMdv--aRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPK 237 (631)
+++.++.|.+. +|+|+.-.....-.+.+..|+++..+.|.|+.++..-.|+.
T Consensus 99 ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~ 152 (267)
T PRK07226 99 VEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPG 152 (267)
T ss_pred HHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCc
Confidence 99999999984 56666644444445555555666677899988865444443
No 238
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=43.04 E-value=2.1e+02 Score=29.52 Aligned_cols=145 Identities=16% Similarity=0.144 Sum_probs=84.7
Q ss_pred CCCChhcHHhHHH-HHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhc--CCCCc
Q 006783 446 EGLTTKDLMDLEF-VAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMK--SSNPL 521 (631)
Q Consensus 446 p~LTekD~~dl~f-~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~--~~~~D 521 (631)
|..|++|++.+-. +.+ ++..|+++ +..|..+++.|.. ..+.|.+=|==|.|....+.-+.++-. ..|.|
T Consensus 17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~~---~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~ 89 (221)
T PRK00507 17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLKG---SDVKVCTVIGFPLGANTTAVKAFEAKDAIANGAD 89 (221)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhCC---CCCeEEEEecccCCCChHHHHHHHHHHHHHcCCc
Confidence 7789999887643 555 46666654 7789999998842 457777777666666555444333200 11233
Q ss_pred EEEEecCCcccccCh---hhHHHHHHHHHHHHHhc-CCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCcccccC
Q 006783 522 GVMIARGDLAVECGW---ERLADMQEEILSICGAA-HVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLNK 594 (631)
Q Consensus 522 GImIaRGDL~veig~---e~l~~~Qk~Ii~~c~aa-gkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLsk 594 (631)
.| |+-+.++. .+...+.++|...++++ ++++=+ +| .++.=+..|+.+++.. .|+|.|--|.
T Consensus 90 Ei-----D~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKv---Il----Et~~L~~e~i~~a~~~~~~agadfIKTsT 157 (221)
T PRK00507 90 EI-----DMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKV---II----ETCLLTDEEKVKACEIAKEAGADFVKTST 157 (221)
T ss_pred eE-----eeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEE---Ee----ecCcCCHHHHHHHHHHHHHhCCCEEEcCC
Confidence 33 23333332 24666666666655543 332211 22 3444456666555544 6999888887
Q ss_pred CccH----HHHHHHHHHHH
Q 006783 595 GKHV----VEAVSTLDKIL 609 (631)
Q Consensus 595 G~yp----veAV~~L~~Il 609 (631)
|..+ .+.|+.|.+.+
T Consensus 158 G~~~~gat~~~v~~m~~~~ 176 (221)
T PRK00507 158 GFSTGGATVEDVKLMRETV 176 (221)
T ss_pred CCCCCCCCHHHHHHHHHHh
Confidence 7543 77777776655
No 239
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=43.01 E-value=1.7e+02 Score=31.69 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=59.7
Q ss_pred EEEeccCChhHHHHHHHHHHHhCCCCceEEEeecC----hhhhcch---HHHHHHhhcCCCCcEEEEecCCcccccChh-
Q 006783 466 VGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIET----KSGFERL---PHILLEAMKSSNPLGVMIARGDLAVECGWE- 537 (631)
Q Consensus 466 V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt----~~av~NL---~eIl~~a~~~~~~DGImIaRGDL~veig~e- 537 (631)
.+.+..++++-+.++-+.+.+. -++.|.+||=. .+..+++ -+++..+ |+|.|.|-..=- ..-|+.
T Consensus 100 ~Gs~Ll~~p~~~~~iv~av~~~--~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~----G~~~itvHgRt~-~~qg~sg 172 (318)
T TIGR00742 100 FGACLMGNADLVADCVKAMQEA--VNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGK----GCQNFIVHARKA-WLSGLSP 172 (318)
T ss_pred eehHhhcCHHHHHHHHHHHHHH--hCCCeEEEEecCCCCcchHHHHHHHHHHHHHc----CCCEEEEeCCch-hhcCCCc
Confidence 4556667777777776666653 24679999822 2222333 3344333 789988732210 000110
Q ss_pred ----hHH-HHHHHHHHHHHhc-CCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 538 ----RLA-DMQEEILSICGAA-HVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 538 ----~l~-~~Qk~Ii~~c~aa-gkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
.++ .-.+.|-...++. ++|||. +-++-|..++.+.. .|+|+||+.
T Consensus 173 ~~~~~~~~~~~~~i~~vk~~~~~ipVi~---------NGdI~s~~da~~~l--~g~dgVMig 223 (318)
T TIGR00742 173 KENREIPPLRYERVYQLKKDFPHLTIEI---------NGGIKNSEQIKQHL--SHVDGVMVG 223 (318)
T ss_pred cccccCCchhHHHHHHHHHhCCCCcEEE---------ECCcCCHHHHHHHH--hCCCEEEEC
Confidence 001 1122333444555 799986 44566666655544 389999996
No 240
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=42.94 E-value=1.5e+02 Score=33.15 Aligned_cols=90 Identities=24% Similarity=0.348 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEe----cCCccccc-ChhhHHHHHHHHH
Q 006783 473 DSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIA----RGDLAVEC-GWERLADMQEEIL 547 (631)
Q Consensus 473 sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIa----RGDL~vei-g~e~l~~~Qk~Ii 547 (631)
+-+++..+++.. +..||.| ++-+.++..... ..|+|||+|. |. +-.-. .++-++++++.+
T Consensus 241 tW~~i~~lr~~~------~~pvivK-----gV~~~~dA~~a~--~~G~d~I~vsnhGGr~-~d~~~~t~~~L~ei~~~~- 305 (383)
T cd03332 241 TWEDLAFLREWT------DLPIVLK-----GILHPDDARRAV--EAGVDGVVVSNHGGRQ-VDGSIAALDALPEIVEAV- 305 (383)
T ss_pred CHHHHHHHHHhc------CCCEEEe-----cCCCHHHHHHHH--HCCCCEEEEcCCCCcC-CCCCcCHHHHHHHHHHHh-
Confidence 557777777643 3568888 223333322221 2378999994 32 11111 123444444322
Q ss_pred HHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 548 SICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 548 ~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
. -.+|||.+.-| =+ =+|++.| .|||+|++.
T Consensus 306 ---~-~~~~vi~dGGI---------r~---G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 306 ---G-DRLTVLFDSGV---------RT---GADIMKALALGAKAVLIG 337 (383)
T ss_pred ---c-CCCeEEEeCCc---------Cc---HHHHHHHHHcCCCEEEEc
Confidence 1 24899986543 33 3578777 699999996
No 241
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=42.86 E-value=1.3e+02 Score=28.63 Aligned_cols=28 Identities=7% Similarity=-0.014 Sum_probs=16.9
Q ss_pred cccCcccccCCcc------HHHHHHHHHHHHHHH
Q 006783 585 RRASCVMLNKGKH------VVEAVSTLDKILHIN 612 (631)
Q Consensus 585 ~gaD~vmLskG~y------pveAV~~L~~Il~r~ 612 (631)
.|+|++++.--.| .-+.++....|+...
T Consensus 77 ~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~ 110 (201)
T cd00945 77 LGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAA 110 (201)
T ss_pred cCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHh
Confidence 6999998852222 344556666666653
No 242
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=42.84 E-value=2.4e+02 Score=27.48 Aligned_cols=115 Identities=11% Similarity=0.083 Sum_probs=61.8
Q ss_pred ChhcHHhHHHHH-hcCCEEEE--eccCC--hhHHHHHHHHHHHhCCCCceEEE--eecChhhhcc-hHHHHHHhhcCCCC
Q 006783 449 TTKDLMDLEFVA-SHADMVGI--SFVRD--SCDIAMLRKELEKRKVQNLGVVL--KIETKSGFER-LPHILLEAMKSSNP 520 (631)
Q Consensus 449 TekD~~dl~f~~-~~~D~V~~--SFV~s--a~Dv~~lr~~L~~~~~~~~~Iia--KIEt~~av~N-L~eIl~~a~~~~~~ 520 (631)
+.++...+--++ +.+|+|=+ +|+.. .+.++.+++ .. .++.+++ |+.+.. +. +++. ..+ |+
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~~~~~~~g~~~i~~i~~----~~-~~~~i~~~~~v~~~~--~~~~~~~-~~a----Ga 78 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGTPLIKSEGMEAVRALRE----AF-PDKIIVADLKTADAG--ALEAEMA-FKA----GA 78 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCCHHHHHhCHHHHHHHHH----HC-CCCEEEEEEEecccc--HHHHHHH-Hhc----CC
Confidence 334444443333 35888877 56532 233333333 21 2445555 777653 22 2332 233 78
Q ss_pred cEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 521 LGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 521 DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
|+|.+-- +- .+..-++++..|+++|++++++. + +.-|..|+.- +...|+|.+.+.
T Consensus 79 d~i~~h~-----~~----~~~~~~~~i~~~~~~g~~~~v~~--~------~~~t~~e~~~-~~~~~~d~v~~~ 133 (202)
T cd04726 79 DIVTVLG-----AA----PLSTIKKAVKAAKKYGKEVQVDL--I------GVEDPEKRAK-LLKLGVDIVILH 133 (202)
T ss_pred CEEEEEe-----eC----CHHHHHHHHHHHHHcCCeEEEEE--e------CCCCHHHHHH-HHHCCCCEEEEc
Confidence 9888731 11 12345778899999999999631 0 1234444433 334699998874
No 243
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=42.84 E-value=2.5e+02 Score=29.84 Aligned_cols=129 Identities=18% Similarity=0.170 Sum_probs=70.3
Q ss_pred CChhcHHhHHHHHh-cCCEEEEeccC-------------ChhHHHHHHHHHHHhCCCCceEEEeec------Ch-hhhcc
Q 006783 448 LTTKDLMDLEFVAS-HADMVGISFVR-------------DSCDIAMLRKELEKRKVQNLGVVLKIE------TK-SGFER 506 (631)
Q Consensus 448 LTekD~~dl~f~~~-~~D~V~~SFV~-------------sa~Dv~~lr~~L~~~~~~~~~IiaKIE------t~-~av~N 506 (631)
+|..|.---+.+-+ ++|.|.++.-- +.+++...-+.+. ++.+...|++=++ ++ ++++|
T Consensus 20 ~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~-r~~~~p~vvaD~pfg~y~~~~~~av~~ 98 (264)
T PRK00311 20 LTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVA-RGAPRALVVADMPFGSYQASPEQALRN 98 (264)
T ss_pred EeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHH-hcCCCCcEEEeCCCCCccCCHHHHHHH
Confidence 45566555455444 68888765211 1122222112222 2334456888775 22 46788
Q ss_pred hHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEE----EEech---hhhhhhCCCCC--hhh
Q 006783 507 LPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVI----WATQV---LESLVKFGVPT--RAE 577 (631)
Q Consensus 507 L~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi----~ATQv---LESM~~~~~Pt--RAE 577 (631)
.-.++..+ |.+||.|-=| ..+.+.|+.+.++|+||+ +--|- +..+...+... ..|
T Consensus 99 a~r~~~~a----Ga~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~ 162 (264)
T PRK00311 99 AGRLMKEA----GAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEK 162 (264)
T ss_pred HHHHHHHh----CCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHH
Confidence 88888766 7899999433 245566777789999996 21111 11111222221 234
Q ss_pred HHhhhhc---cccCccccc
Q 006783 578 ITDVASA---RRASCVMLN 593 (631)
Q Consensus 578 vtDva~a---~gaD~vmLs 593 (631)
+-+-+++ .|||++.|-
T Consensus 163 ~i~ra~a~~eAGA~~i~lE 181 (264)
T PRK00311 163 LLEDAKALEEAGAFALVLE 181 (264)
T ss_pred HHHHHHHHHHCCCCEEEEc
Confidence 4455555 599998884
No 244
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.72 E-value=84 Score=32.47 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=66.9
Q ss_pred cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecC--------Ccccc
Q 006783 462 HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARG--------DLAVE 533 (631)
Q Consensus 462 ~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRG--------DL~ve 533 (631)
..-.|++=...++++...+-+.|-+-|...+-| -.-|+.+++.+.++...--+. . ..++||-| +.+++
T Consensus 14 ~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEi--T~~tp~a~~~i~~l~~~~~~~-~-p~~~vGaGTVl~~e~a~~a~~ 89 (222)
T PRK07114 14 ATGMVPVFYHADVEVAKKVIKACYDGGARVFEF--TNRGDFAHEVFAELVKYAAKE-L-PGMILGVGSIVDAATAALYIQ 89 (222)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEE--eCCCCcHHHHHHHHHHHHHhh-C-CCeEEeeEeCcCHHHHHHHHH
Confidence 345566666677777777777777666432222 335667777777765332011 1 24677655 22222
Q ss_pred cChh--hHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 534 CGWE--RLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 534 ig~e--~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
.|.+ --|-.-.+++..|+++++|++= |.=|..| +..| .|+|.|=|-
T Consensus 90 aGA~FiVsP~~~~~v~~~~~~~~i~~iP-----------G~~TpsE---i~~A~~~Ga~~vKlF 139 (222)
T PRK07114 90 LGANFIVTPLFNPDIAKVCNRRKVPYSP-----------GCGSLSE---IGYAEELGCEIVKLF 139 (222)
T ss_pred cCCCEEECCCCCHHHHHHHHHcCCCEeC-----------CCCCHHH---HHHHHHCCCCEEEEC
Confidence 2221 1223447899999999999984 4555556 4444 588877664
No 245
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=42.46 E-value=4.9e+02 Score=28.41 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=93.4
Q ss_pred CChhcHHhHHHHHh--c-CCEEEEec--cC---------ChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHH
Q 006783 448 LTTKDLMDLEFVAS--H-ADMVGISF--VR---------DSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLE 513 (631)
Q Consensus 448 LTekD~~dl~f~~~--~-~D~V~~SF--V~---------sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~ 513 (631)
-++++.+|+...++ . +|+|-+.+ .+ +++.+..+.+.+++. .+..|++||== -++++.+|...
T Consensus 106 ~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~--~~~Pv~vKl~P--~~~di~~iA~~ 181 (310)
T COG0167 106 PSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA--TKVPVFVKLAP--NITDIDEIAKA 181 (310)
T ss_pred CcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhc--ccCceEEEeCC--CHHHHHHHHHH
Confidence 35788888877664 3 78887643 22 444555555555543 35889999964 66677777766
Q ss_pred hhcCCCCcEEEEe-------cCCccc-------ccC-h---hhHHHHHHHHHHHHHhcC--CCEEEEechhhhhhhCCCC
Q 006783 514 AMKSSNPLGVMIA-------RGDLAV-------ECG-W---ERLADMQEEILSICGAAH--VPVIWATQVLESLVKFGVP 573 (631)
Q Consensus 514 a~~~~~~DGImIa-------RGDL~v-------eig-~---e~l~~~Qk~Ii~~c~aag--kPvi~ATQvLESM~~~~~P 573 (631)
+.+ .|.|||..- +.|+.. +.| + .-.+..-+.|-..++..+ +|+|=.- |+=
T Consensus 182 ~~~-~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvG---------GI~ 251 (310)
T COG0167 182 AEE-AGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVG---------GIE 251 (310)
T ss_pred HHH-cCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEec---------CcC
Confidence 643 478999862 134443 222 1 344555566666777777 8888533 333
Q ss_pred ChhhHHhhhhc--cccCccccc-----CCccHHHHHHHHHHHHHHHhhc
Q 006783 574 TRAEITDVASA--RRASCVMLN-----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 574 tRAEvtDva~a--~gaD~vmLs-----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
| ..|++-- .||+.|.+- .||+.++-+ .+.|.+.|++|
T Consensus 252 s---~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I--~~~l~~~l~~~ 295 (310)
T COG0167 252 T---GEDALEFILAGASAVQVGTALIYKGPGIVKEI--IKGLARWLEEK 295 (310)
T ss_pred c---HHHHHHHHHcCCchheeeeeeeeeCchHHHHH--HHHHHHHHHHc
Confidence 3 3455544 699999886 789887643 45666677765
No 246
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=42.39 E-value=4.2e+02 Score=27.69 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=64.3
Q ss_pred HHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCc-EEEE-ecCCccc
Q 006783 456 LEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPL-GVMI-ARGDLAV 532 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~D-GImI-aRGDL~v 532 (631)
++.+.+ ++|.|.+...- .++...+.+.+++.|.+ +.++..=.| ..+.+..|+..+ + -|++ ++-..+-
T Consensus 108 ~~~~~~aGvdgviipDlp-~ee~~~~~~~~~~~gl~-~i~lv~P~T--~~eri~~i~~~~------~gfiy~vs~~G~TG 177 (256)
T TIGR00262 108 YAKCKEVGVDGVLVADLP-LEESGDLVEAAKKHGVK-PIFLVAPNA--DDERLKQIAEKS------QGFVYLVSRAGVTG 177 (256)
T ss_pred HHHHHHcCCCEEEECCCC-hHHHHHHHHHHHHCCCc-EEEEECCCC--CHHHHHHHHHhC------CCCEEEEECCCCCC
Confidence 444555 79999999774 46778888888877733 333333344 357788888766 4 3333 3321111
Q ss_pred ccChhhHHHHHHHHHHHHHh-cCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 533 ECGWERLADMQEEILSICGA-AHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 533 eig~e~l~~~Qk~Ii~~c~a-agkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
+- ..+..-..+.++..++ .++|+++- -++=|...+.. +...|||+|...
T Consensus 178 ~~--~~~~~~~~~~i~~lr~~~~~pi~vg---------fGI~~~e~~~~-~~~~GADgvVvG 227 (256)
T TIGR00262 178 AR--NRAASALNELVKRLKAYSAKPVLVG---------FGISKPEQVKQ-AIDAGADGVIVG 227 (256)
T ss_pred Cc--ccCChhHHHHHHHHHhhcCCCEEEe---------CCCCCHHHHHH-HHHcCCCEEEEC
Confidence 10 0111122333333333 47788763 35555555433 233689988875
No 247
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=42.35 E-value=3.9e+02 Score=28.99 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=38.1
Q ss_pred HHHHhcCCCEE-EEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHHHHHHHHHHHh
Q 006783 548 SICGAAHVPVI-WATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVSTLDKILHINT 613 (631)
Q Consensus 548 ~~c~aagkPvi-~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~~L~~Il~r~e 613 (631)
+.++....||+ +| .-++-|.+.+..+.. .|+|+|++. +-+.|.+.++.+.+.+....
T Consensus 197 ei~~~~~iPVV~~A--------eGGI~TPedaa~vme-~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~ 258 (293)
T PRK04180 197 EVAELGRLPVVNFA--------AGGIATPADAALMMQ-LGADGVFVGSGIFKSGDPEKRARAIVEATTHYD 258 (293)
T ss_pred HHHHhCCCCEEEEE--------eCCCCCHHHHHHHHH-hCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcC
Confidence 33445578987 32 335556666554443 799999997 45679999888887776544
No 248
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=42.12 E-value=1.2e+02 Score=32.90 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=46.9
Q ss_pred hhcCCCCCCCCeEEEEecCCCC-ChH---H-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCC
Q 006783 160 LLLGPLRHNQTNHIMVTVGQEA-SES---E-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLA 234 (631)
Q Consensus 160 ~l~G~~~~~R~TkImvTlgp~a-a~~---~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~ 234 (631)
.|||.. ..+...-+|++... ..+ + .+++++.|.+.+.|-+.. + +.+-++.||.+.+.+|..+.+++|--
T Consensus 117 ~LLGg~--~~~v~~y~s~~~~~~~~e~~~~~a~~~~~~Gf~~~Kikvg~-~---~~~d~~~v~~vRe~~G~~~~l~vDaN 190 (352)
T cd03328 117 RLLGRA--HDSVPVYGSGGFTSYDDDRLREQLSGWVAQGIPRVKMKIGR-D---PRRDPDRVAAARRAIGPDAELFVDAN 190 (352)
T ss_pred HHhcCC--CCCeEEEEecCCCCCCHHHHHHHHHHHHHCCCCEEEeecCC-C---HHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 456752 23455555654211 222 2 788889999999998742 3 35667777777778888899999975
Q ss_pred C
Q 006783 235 G 235 (631)
Q Consensus 235 G 235 (631)
+
T Consensus 191 ~ 191 (352)
T cd03328 191 G 191 (352)
T ss_pred C
Confidence 4
No 249
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=41.98 E-value=1.5e+02 Score=27.25 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCC
Q 006783 476 DIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHV 555 (631)
Q Consensus 476 Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagk 555 (631)
-++.+++.|.+.+ ....+.+ ++..-.-+++++++.. .|-|+.+-.+ ......+-..|+++++
T Consensus 57 Ka~~~~~~l~~~n-p~~~v~~-~~~~~~~~~~~~~~~~------~d~vi~~~d~----------~~~~~~l~~~~~~~~~ 118 (135)
T PF00899_consen 57 KAEAAKERLQEIN-PDVEVEA-IPEKIDEENIEELLKD------YDIVIDCVDS----------LAARLLLNEICREYGI 118 (135)
T ss_dssp HHHHHHHHHHHHS-TTSEEEE-EESHCSHHHHHHHHHT------SSEEEEESSS----------HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhc-Cceeeee-eecccccccccccccC------CCEEEEecCC----------HHHHHHHHHHHHHcCC
Confidence 4667777888775 4455554 3333345778887743 4888877554 3355678889999999
Q ss_pred CEEEEe
Q 006783 556 PVIWAT 561 (631)
Q Consensus 556 Pvi~AT 561 (631)
|+|++.
T Consensus 119 p~i~~~ 124 (135)
T PF00899_consen 119 PFIDAG 124 (135)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 999864
No 250
>PRK00208 thiG thiazole synthase; Reviewed
Probab=41.98 E-value=2.6e+02 Score=29.62 Aligned_cols=77 Identities=23% Similarity=0.223 Sum_probs=46.3
Q ss_pred CCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc---
Q 006783 519 NPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN--- 593 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs--- 593 (631)
|++.||.-=.-.|--.|..+ ++..+.|.+ ..+.|||+ ..++=|.++ ++.+ .|+|+|+++
T Consensus 144 G~~~vmPlg~pIGsg~gi~~-~~~i~~i~e---~~~vpVIv---------eaGI~tped---a~~AmelGAdgVlV~SAI 207 (250)
T PRK00208 144 GCAAVMPLGAPIGSGLGLLN-PYNLRIIIE---QADVPVIV---------DAGIGTPSD---AAQAMELGADAVLLNTAI 207 (250)
T ss_pred CCCEeCCCCcCCCCCCCCCC-HHHHHHHHH---hcCCeEEE---------eCCCCCHHH---HHHHHHcCCCEEEEChHh
Confidence 34666541122222234433 444444433 25899997 446666554 5544 699999998
Q ss_pred -CCccHHHHHHHHHHHHHH
Q 006783 594 -KGKHVVEAVSTLDKILHI 611 (631)
Q Consensus 594 -kG~ypveAV~~L~~Il~r 611 (631)
+.+.|+.--+.+..-+..
T Consensus 208 tka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 208 AVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred hCCCCHHHHHHHHHHHHHH
Confidence 778898877777666653
No 251
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=41.86 E-value=4.5e+02 Score=27.87 Aligned_cols=124 Identities=17% Similarity=0.250 Sum_probs=71.1
Q ss_pred CChhcHHhHHHHHh-cCCEEEE-ecc-----------CChhHHHHHHHHHHHhCCCCceEEEeecChhh----hcchHHH
Q 006783 448 LTTKDLMDLEFVAS-HADMVGI-SFV-----------RDSCDIAMLRKELEKRKVQNLGVVLKIETKSG----FERLPHI 510 (631)
Q Consensus 448 LTekD~~dl~f~~~-~~D~V~~-SFV-----------~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~a----v~NL~eI 510 (631)
|-..-.+.|..|.. ++|||=+ +|+ -++.++-+.|+.| + .++.|++-|--+.+ -..++++
T Consensus 87 L~nd~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l---~-~~v~i~adV~~kh~~~l~~~~~~e~ 162 (257)
T TIGR00259 87 LRNDAVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLL---G-SEVKILADIVVKHAVHLGNRDLESI 162 (257)
T ss_pred ecCCCHHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHc---C-CCcEEEeceeecccCcCCCCCHHHH
Confidence 44344556776655 7898877 444 2344555555544 3 47889988754433 3678888
Q ss_pred HHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCcc
Q 006783 511 LLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCV 590 (631)
Q Consensus 511 l~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~v 590 (631)
+..+..+..+|||+|.=--=|.+..++.+..+-+ ..-.+|+++++-+ |..-+.+.... +|++
T Consensus 163 a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~------~~~~~PvllggGv----------t~eNv~e~l~~--adGv 224 (257)
T TIGR00259 163 ALDTVERGLADAVILSGKTTGTEVDLELLKLAKE------TVKDTPVLAGSGV----------NLENVEELLSI--ADGV 224 (257)
T ss_pred HHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHh------ccCCCeEEEECCC----------CHHHHHHHHhh--CCEE
Confidence 8765444447999997333333444444443221 1235799998743 22233333332 7777
Q ss_pred ccc
Q 006783 591 MLN 593 (631)
Q Consensus 591 mLs 593 (631)
..+
T Consensus 225 iVg 227 (257)
T TIGR00259 225 IVA 227 (257)
T ss_pred EEC
Confidence 776
No 252
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=41.67 E-value=2.1e+02 Score=31.81 Aligned_cols=87 Identities=23% Similarity=0.313 Sum_probs=49.4
Q ss_pred ChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEec-CCccccc-----ChhhHHHHHHHH
Q 006783 473 DSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIAR-GDLAVEC-----GWERLADMQEEI 546 (631)
Q Consensus 473 sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaR-GDL~vei-----g~e~l~~~Qk~I 546 (631)
+-+||..+++.. ++.|++| ++.+.+... .+. ..|+|||+|+- | +-++ .++-|++++
T Consensus 216 ~w~~i~~l~~~~------~~PvivK-----Gv~~~eda~-~a~-~~Gvd~I~VS~HG--Grq~~~~~a~~~~L~ei~--- 277 (367)
T TIGR02708 216 SPRDIEEIAGYS------GLPVYVK-----GPQCPEDAD-RAL-KAGASGIWVTNHG--GRQLDGGPAAFDSLQEVA--- 277 (367)
T ss_pred CHHHHHHHHHhc------CCCEEEe-----CCCCHHHHH-HHH-HcCcCEEEECCcC--ccCCCCCCcHHHHHHHHH---
Confidence 446777776643 4679999 455443322 221 23899999942 2 2221 123333332
Q ss_pred HHHHHhc--CCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 547 LSICGAA--HVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 547 i~~c~aa--gkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
++. .+|||. ..++-+ -+|+..+ .|||+||+.
T Consensus 278 ----~av~~~i~vi~---------dGGIr~---g~Dv~KaLalGAd~V~ig 312 (367)
T TIGR02708 278 ----EAVDKRVPIVF---------DSGVRR---GQHVFKALASGADLVALG 312 (367)
T ss_pred ----HHhCCCCcEEe---------eCCcCC---HHHHHHHHHcCCCEEEEc
Confidence 333 388887 344444 3567655 799999997
No 253
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=41.56 E-value=2.9e+02 Score=29.10 Aligned_cols=24 Identities=4% Similarity=-0.227 Sum_probs=13.3
Q ss_pred cccCcccccCCc-cHHHHHHHHHHH
Q 006783 585 RRASCVMLNKGK-HVVEAVSTLDKI 608 (631)
Q Consensus 585 ~gaD~vmLskG~-ypveAV~~L~~I 608 (631)
.|+++.+-..+. +|-..+++.+..
T Consensus 196 ~Ga~G~is~~~n~~P~~~~~l~~~~ 220 (289)
T cd00951 196 MGVPTYSSAVFNFVPEIALAFYAAV 220 (289)
T ss_pred CCCCEEEechhhhhHHHHHHHHHHH
Confidence 366666554333 676666655443
No 254
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=41.32 E-value=1.4e+02 Score=30.27 Aligned_cols=146 Identities=15% Similarity=0.131 Sum_probs=86.6
Q ss_pred CCCChh-cHHh-HHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChh-----h-----hcchHHHHH
Q 006783 446 EGLTTK-DLMD-LEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKS-----G-----FERLPHILL 512 (631)
Q Consensus 446 p~LTek-D~~d-l~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~-----a-----v~NL~eIl~ 512 (631)
|.+|.. |.+. ++.+.+ +++.|.++ +.-+...++.+...+ ..+.++.+...-. - +...++.+.
T Consensus 13 ~~~~~~~~~~~~~~~a~~~~~~av~v~----p~~~~~~~~~~~~~~-~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~ 87 (236)
T PF01791_consen 13 GPMTGEEDIKKLCREAIEYGFDAVCVT----PGYVKPAAELLAGSG-VKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIR 87 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSSEEEEE----GGGHHHHHHHSTTST-SEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHhCCCEEEEC----HHHHHHHHHHhhccc-cccceEEEeCCCCCccccccccchHHHHHHHHH
Confidence 455554 5443 445666 69988875 446666666664332 3578888886421 1 333334332
Q ss_pred HhhcCCCCcEEEE--ecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhh---------HHhh
Q 006783 513 EAMKSSNPLGVMI--ARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAE---------ITDV 581 (631)
Q Consensus 513 ~a~~~~~~DGImI--aRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAE---------vtDv 581 (631)
.|.|+|-+ -.|-+.-+- +..+.+.-.++...|+.+|.|+|+= +.|+..| |..+
T Consensus 88 -----~GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIlE----------~~l~~~~~~~~~~~~~I~~a 151 (236)
T PF01791_consen 88 -----LGADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVILE----------PYLRGEEVADEKKPDLIARA 151 (236)
T ss_dssp -----TT-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEEE----------ECECHHHBSSTTHHHHHHHH
T ss_pred -----cCCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEEE----------EecCchhhcccccHHHHHHH
Confidence 25677655 222222222 4566677778899999999999973 4555555 2332
Q ss_pred h---hccccCcccccCC---ccHHHHHHHHHHHHHHH
Q 006783 582 A---SARRASCVMLNKG---KHVVEAVSTLDKILHIN 612 (631)
Q Consensus 582 a---~a~gaD~vmLskG---~ypveAV~~L~~Il~r~ 612 (631)
+ ...|||.|=.+.| ..-.+.++.|.+++...
T Consensus 152 ~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~ 188 (236)
T PF01791_consen 152 ARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAA 188 (236)
T ss_dssp HHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTH
T ss_pred HHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhc
Confidence 2 2369999998866 44557788888877743
No 255
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=41.21 E-value=2.2e+02 Score=29.89 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=45.6
Q ss_pred CCcEEEEecCCcc--cccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhh---ccccCccccc
Q 006783 519 NPLGVMIARGDLA--VECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVAS---ARRASCVMLN 593 (631)
Q Consensus 519 ~~DGImIaRGDL~--veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~---a~gaD~vmLs 593 (631)
|++||++. |--| ..+..++=..+-+.+.+.+ +-.+|+++.+ +..+-.|.-+.+. ..|+|++|+.
T Consensus 35 Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~~-~~~~~vi~gv---------~~~~~~~~i~~a~~a~~~G~d~v~~~ 103 (292)
T PRK03170 35 GTDGLVVV-GTTGESPTLTHEEHEELIRAVVEAV-NGRVPVIAGT---------GSNSTAEAIELTKFAEKAGADGALVV 103 (292)
T ss_pred CCCEEEEC-CcCCccccCCHHHHHHHHHHHHHHh-CCCCcEEeec---------CCchHHHHHHHHHHHHHcCCCEEEEC
Confidence 78999984 3221 1223333333333333433 2236887543 2334444444443 3699999997
Q ss_pred ----CCccHHHHHHHHHHHHHHH
Q 006783 594 ----KGKHVVEAVSTLDKILHIN 612 (631)
Q Consensus 594 ----kG~ypveAV~~L~~Il~r~ 612 (631)
..+..-+.+++...|+...
T Consensus 104 pP~~~~~~~~~i~~~~~~ia~~~ 126 (292)
T PRK03170 104 TPYYNKPTQEGLYQHFKAIAEAT 126 (292)
T ss_pred CCcCCCCCHHHHHHHHHHHHhcC
Confidence 3344567778888887653
No 256
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=41.03 E-value=1.4e+02 Score=32.10 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=49.3
Q ss_pred hhcCCCCCCCCeEEEEecCCCCChH---H-HHHHHHhCCCEEEeecCCCC---hHHHHHHHHHHHHHHhhcCCceEEEec
Q 006783 160 LLLGPLRHNQTNHIMVTVGQEASES---E-ISDILKAGASIIRINCAHGN---PSIWSEIIRRVKTSSQMLEMPCQILMD 232 (631)
Q Consensus 160 ~l~G~~~~~R~TkImvTlgp~aa~~---~-i~~Li~aGMdvaRINcAHg~---~e~w~~mI~~vR~a~~~~g~~~~IlmD 232 (631)
.|||.... .+.....|.+.....+ + ++++++.|-+.+.|...++. .+...+-++.|+...+.+|..+.|++|
T Consensus 99 ~LLGG~~r-~~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~~~~l~vD 177 (341)
T cd03327 99 KLLGGRTR-DKIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLD 177 (341)
T ss_pred HHcCCCcC-CceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 45665422 3556666643212222 2 78888999999999886432 234566777777777778888999999
Q ss_pred CCC
Q 006783 233 LAG 235 (631)
Q Consensus 233 L~G 235 (631)
--+
T Consensus 178 an~ 180 (341)
T cd03327 178 CYM 180 (341)
T ss_pred CCC
Confidence 654
No 257
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=40.96 E-value=2.1e+02 Score=29.72 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=80.8
Q ss_pred HHHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccCh
Q 006783 457 EFVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGW 536 (631)
Q Consensus 457 ~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~ 536 (631)
.|+..++|+|.+=+ +...++.++-+++++.| -..+|+.+=+|+ ++.++.++... |.|+| ++|+=|+
T Consensus 79 ~fa~agad~It~H~-E~~~~~~r~i~~Ik~~G-~kaGv~lnP~Tp--~~~i~~~l~~v------D~Vll----MsVnPGf 144 (220)
T COG0036 79 AFAKAGADIITFHA-EATEHIHRTIQLIKELG-VKAGLVLNPATP--LEALEPVLDDV------DLVLL----MSVNPGF 144 (220)
T ss_pred HHHHhCCCEEEEEe-ccCcCHHHHHHHHHHcC-CeEEEEECCCCC--HHHHHHHHhhC------CEEEE----EeECCCC
Confidence 46666899999864 57778999999999988 568999999995 67788888765 99999 5777776
Q ss_pred ----------hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHH
Q 006783 537 ----------ERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAV 602 (631)
Q Consensus 537 ----------e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV 602 (631)
+++.++.+.+-. .+...|.. .-|+ +. |--....+.|||.+... +++.-.+.+
T Consensus 145 gGQ~Fi~~~l~Ki~~lr~~~~~----~~~~~IeV--------DGGI-~~-~t~~~~~~AGad~~VaGSalF~~~d~~~~i 210 (220)
T COG0036 145 GGQKFIPEVLEKIRELRAMIDE----RLDILIEV--------DGGI-NL-ETIKQLAAAGADVFVAGSALFGADDYKATI 210 (220)
T ss_pred cccccCHHHHHHHHHHHHHhcc----cCCeEEEE--------eCCc-CH-HHHHHHHHcCCCEEEEEEEEeCCccHHHHH
Confidence 344444433322 33333431 1111 11 22223444799988876 455556666
Q ss_pred HHHHHHH
Q 006783 603 STLDKIL 609 (631)
Q Consensus 603 ~~L~~Il 609 (631)
+.+....
T Consensus 211 ~~~~~~~ 217 (220)
T COG0036 211 RELRGEL 217 (220)
T ss_pred HHHHHHh
Confidence 6665543
No 258
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=40.76 E-value=94 Score=29.00 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=16.0
Q ss_pred CcccccChhhHHHHHHHHHHHHHhcCCCEEEE
Q 006783 529 DLAVECGWERLADMQEEILSICGAAHVPVIWA 560 (631)
Q Consensus 529 DL~veig~e~l~~~Qk~Ii~~c~aagkPvi~A 560 (631)
|+.-..+.++...--++++..+++.+.++|+.
T Consensus 76 D~~~~~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 76 DGLRGIPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 44333344444444555555555555555553
No 259
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=40.62 E-value=1.2e+02 Score=31.24 Aligned_cols=68 Identities=19% Similarity=0.314 Sum_probs=43.4
Q ss_pred hhcCCCCCCCCeEEEEecCCCCChH--H-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecC
Q 006783 160 LLLGPLRHNQTNHIMVTVGQEASES--E-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDL 233 (631)
Q Consensus 160 ~l~G~~~~~R~TkImvTlgp~aa~~--~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL 233 (631)
.|+|..+ .+..+-+|++....+. + ++++.+.|-+.+.|++.. ++ .+-++.|+...+.+|..+.|++|-
T Consensus 66 ~llG~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~-~~---~~d~~~v~~vr~~~g~~~~l~vDa 136 (265)
T cd03315 66 LLLGGYR--DRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGR-DP---ARDVAVVAALREAVGDDAELRVDA 136 (265)
T ss_pred HHcCCCC--CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecCC-CH---HHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3566532 3466666776432121 2 888899999999999864 33 344555555555667777888885
No 260
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=40.41 E-value=3.6e+02 Score=28.54 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=49.9
Q ss_pred CceEEEee---cChhhhcchHHHHHHhhcCCCC-cEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEE-Eechhh
Q 006783 491 NLGVVLKI---ETKSGFERLPHILLEAMKSSNP-LGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIW-ATQVLE 565 (631)
Q Consensus 491 ~~~IiaKI---Et~~av~NL~eIl~~a~~~~~~-DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~-ATQvLE 565 (631)
+..|+.|= -|.+-+.+.-|.+... |. +-++.=||=.+.+........+ ..|...-+..|.|||+ .|+-
T Consensus 122 gkPVilk~G~~~t~~e~~~A~e~i~~~----Gn~~i~L~eRg~~~Y~~~~~n~~dl-~ai~~lk~~~~lPVivd~SHs-- 194 (250)
T PRK13397 122 DKPILFKRGLMATIEEYLGALSYLQDT----GKSNIILCERGVRGYDVETRNMLDI-MAVPIIQQKTDLPIIVDVSHS-- 194 (250)
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHc----CCCeEEEEccccCCCCCccccccCH-HHHHHHHHHhCCCeEECCCCC--
Confidence 34455552 3444444544544433 33 4555567876555443211111 1112222446899998 4432
Q ss_pred hhhhCCCCChh---hHHhhhhccccCcccccCCccHHHH
Q 006783 566 SLVKFGVPTRA---EITDVASARRASCVMLNKGKHVVEA 601 (631)
Q Consensus 566 SM~~~~~PtRA---EvtDva~a~gaD~vmLskG~ypveA 601 (631)
.-.|. .+.=+|.|.|||++|+-+=+.|-+|
T Consensus 195 ------~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A 227 (250)
T PRK13397 195 ------TGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHA 227 (250)
T ss_pred ------CcccchHHHHHHHHHHhCCCEEEEEecCCcccc
Confidence 11122 3333566689999999766666555
No 261
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.15 E-value=35 Score=31.34 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.4
Q ss_pred hcccCCCCcEEEeCCeEEEEEEEEe
Q 006783 388 FDSVKPGEPIAFDDGKIWGLIQGAS 412 (631)
Q Consensus 388 ~~~v~~Gd~I~iDDGkI~~~V~~v~ 412 (631)
..+++|||.|.|..+++..+|.++.
T Consensus 31 rr~ik~GD~IiF~~~~l~v~V~~vr 55 (111)
T COG4043 31 RRQIKPGDKIIFNGDKLKVEVIDVR 55 (111)
T ss_pred hcCCCCCCEEEEcCCeeEEEEEEEe
Confidence 5789999999999999998887653
No 262
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=40.14 E-value=1.1e+02 Score=26.45 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=43.7
Q ss_pred CCeEEEEecCCCCChHH-HHHH-HHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecC
Q 006783 169 QTNHIMVTVGQEASESE-ISDI-LKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDL 233 (631)
Q Consensus 169 R~TkImvTlgp~aa~~~-i~~L-i~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL 233 (631)
++..+|+ +.+.|-+ +.++ -..|+.+.|-+-++|....-++|++.+++ |..+.|-.|-
T Consensus 10 ~~~~~lv---S~s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~-----G~~~~itpDG 68 (74)
T PF04028_consen 10 RKIAALV---SRSRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALKE-----GYSIAITPDG 68 (74)
T ss_pred CCEEEEE---ccCcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHC-----CCeEEEeCCC
Confidence 4555555 3456666 5544 45799999999999999999999988883 7788888884
No 263
>PRK15452 putative protease; Provisional
Probab=39.80 E-value=67 Score=36.48 Aligned_cols=82 Identities=9% Similarity=0.079 Sum_probs=52.5
Q ss_pred ceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccc-----cChhhHHHHHHHHHHHHHhcCCCEEEEechhhh
Q 006783 492 LGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVE-----CGWERLADMQEEILSICGAAHVPVIWATQVLES 566 (631)
Q Consensus 492 ~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve-----ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLES 566 (631)
+-+.|..-|.++++. -+ ..|.|+|.+|-..++.- +..++ -++.+..|+++|+.|.+++..
T Consensus 4 peLlapag~~e~l~a---Ai-----~~GADaVY~G~~~~~~R~~~~~f~~ed----l~eav~~ah~~g~kvyvt~n~--- 68 (443)
T PRK15452 4 PELLSPAGTLKNMRY---AF-----AYGADAVYAGQPRYSLRVRNNEFNHEN----LALGINEAHALGKKFYVVVNI--- 68 (443)
T ss_pred cEEEEECCCHHHHHH---HH-----HCCCCEEEECCCccchhhhccCCCHHH----HHHHHHHHHHcCCEEEEEecC---
Confidence 345666666555531 11 23789999987777652 33333 456788999999999998753
Q ss_pred hhhCCCCChhhHHhhhh------ccccCccccc
Q 006783 567 LVKFGVPTRAEITDVAS------ARRASCVMLN 593 (631)
Q Consensus 567 M~~~~~PtRAEvtDva~------a~gaD~vmLs 593 (631)
+|.-.|+..+.. ..|+|+|+.+
T Consensus 69 -----i~~e~el~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 69 -----APHNAKLKTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred -----cCCHHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 344455543322 2589999986
No 264
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=39.26 E-value=3.6e+02 Score=29.27 Aligned_cols=119 Identities=12% Similarity=0.111 Sum_probs=61.8
Q ss_pred CEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeec----ChhhhcchHHHHHHhhcCCCCcEEEEecCC--ccc-c---
Q 006783 464 DMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIE----TKSGFERLPHILLEAMKSSNPLGVMIARGD--LAV-E--- 533 (631)
Q Consensus 464 D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIE----t~~av~NL~eIl~~a~~~~~~DGImIaRGD--L~v-e--- 533 (631)
|..+-++.++++-+.++-+.+.+. -+..|.+||- ..+..+++.+++... ...|+|+|.|--.+ +.. .
T Consensus 108 ~~~Gs~L~~~p~~~~eiv~avr~~--v~~pVsvKiR~g~~~~~t~~~~~~~~~~l-~~aG~d~i~vh~Rt~~~~g~~~~~ 184 (333)
T PRK11815 108 GRFGACLMAEPELVADCVKAMKDA--VSIPVTVKHRIGIDDQDSYEFLCDFVDTV-AEAGCDTFIVHARKAWLKGLSPKE 184 (333)
T ss_pred CCeeeHHhcCHHHHHHHHHHHHHH--cCCceEEEEEeeeCCCcCHHHHHHHHHHH-HHhCCCEEEEcCCchhhcCCCccc
Confidence 335666777777777776666543 2467888871 001112233333221 12278999884221 111 0
Q ss_pred ---cChhhHHHHHHHHHHHHHhc-CCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHH
Q 006783 534 ---CGWERLADMQEEILSICGAA-HVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVE 600 (631)
Q Consensus 534 ---ig~e~l~~~Qk~Ii~~c~aa-gkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypve 600 (631)
++.-.. +.+-..+++. .+|||.. -++-|..++.++.. ++|+||+. .+|+...
T Consensus 185 ~~~~~~~~~----~~i~~v~~~~~~iPVI~n---------GgI~s~eda~~~l~--~aDgVmIGRa~l~nP~~~~ 244 (333)
T PRK11815 185 NREIPPLDY----DRVYRLKRDFPHLTIEIN---------GGIKTLEEAKEHLQ--HVDGVMIGRAAYHNPYLLA 244 (333)
T ss_pred cccCCCcCH----HHHHHHHHhCCCCeEEEE---------CCcCCHHHHHHHHh--cCCEEEEcHHHHhCCHHHH
Confidence 111111 2222334454 7999863 35666666555443 69999997 4454444
No 265
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=39.15 E-value=2.6e+02 Score=30.09 Aligned_cols=144 Identities=22% Similarity=0.190 Sum_probs=87.6
Q ss_pred cccCCCCChhcHHhHHHHHhcCCEEEEeccCChhHHHHHHHHH----------------HHhCCCCceEEEee---cChh
Q 006783 442 NIHFEGLTTKDLMDLEFVASHADMVGISFVRDSCDIAMLRKEL----------------EKRKVQNLGVVLKI---ETKS 502 (631)
Q Consensus 442 ~l~lp~LTekD~~dl~f~~~~~D~V~~SFV~sa~Dv~~lr~~L----------------~~~~~~~~~IiaKI---Et~~ 502 (631)
.+++-.+-++-++.+..+.+..+.-.++=|.++.|++.+-++. ++.|..+..|+.|= -|.+
T Consensus 87 PYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTie 166 (286)
T COG2876 87 PYSFQGLGEEGLKLLKRAADETGLPVVTEVMDVRDVEAAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIE 166 (286)
T ss_pred cccccccCHHHHHHHHHHHHHcCCeeEEEecCHHHHHHHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHH
Confidence 4567778887777777777778888888888888888877653 34444456677762 1222
Q ss_pred hh-cchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhh----
Q 006783 503 GF-ERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAE---- 577 (631)
Q Consensus 503 av-~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAE---- 577 (631)
=. ...+=|++.. +..-|.--||=.+.|-..... .=-.-|..+=..-|-|||+ .||-+-
T Consensus 167 EwL~AAEYI~s~G----N~~vILCERGIRtfe~~TRnt-LDi~aV~~~kq~THLPViv------------DpSH~~Grr~ 229 (286)
T COG2876 167 EWLNAAEYILSHG----NGNVILCERGIRTFEKATRNT-LDISAVPILKQETHLPVIV------------DPSHATGRRD 229 (286)
T ss_pred HHHHHHHHHHhCC----CCcEEEEecccccccccccce-echHHHHHHHhhcCCCEEE------------CCCCcccchh
Confidence 22 2233344433 456666778888777643211 1112233333457999997 444321
Q ss_pred -H---HhhhhccccCcccccCCccHHHHH
Q 006783 578 -I---TDVASARRASCVMLNKGKHVVEAV 602 (631)
Q Consensus 578 -v---tDva~a~gaD~vmLskG~ypveAV 602 (631)
+ .-+|-|.|||++|.-.=|.|-.|+
T Consensus 230 lv~pla~AA~AaGAdglmiEVHp~P~~Al 258 (286)
T COG2876 230 LVEPLAKAAIAAGADGLMIEVHPDPEKAL 258 (286)
T ss_pred hHHHHHHHHHhccCCeeEEEecCCccccc
Confidence 1 125556899999997666665553
No 266
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=38.72 E-value=4.7e+02 Score=27.16 Aligned_cols=136 Identities=14% Similarity=0.195 Sum_probs=82.0
Q ss_pred hHH-HHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccc
Q 006783 455 DLE-FVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVE 533 (631)
Q Consensus 455 dl~-f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve 533 (631)
.++ |+..++|+|.+=+=.+..++..+-+.+++.| -..+|..+-.| .++.+..++... |.|+| ++|+
T Consensus 74 ~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G-~kaGlalnP~T--~~~~l~~~l~~v------D~VLv----MsV~ 140 (229)
T PRK09722 74 YIDQLADAGADFITLHPETINGQAFRLIDEIRRAG-MKVGLVLNPET--PVESIKYYIHLL------DKITV----MTVD 140 (229)
T ss_pred HHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcC-CCEEEEeCCCC--CHHHHHHHHHhc------CEEEE----EEEc
Confidence 454 3445899998875433356777777888887 56899999999 568899999765 99999 5666
Q ss_pred cChh---hHHHHHH---HHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc-C---C--ccHHHH
Q 006783 534 CGWE---RLADMQE---EILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN-K---G--KHVVEA 601 (631)
Q Consensus 534 ig~e---~l~~~Qk---~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs-k---G--~ypveA 601 (631)
-|+. -.+..-+ ++-+....++..+.+. +. |--+..-+. -.-..|||.+.+. . | +-+.++
T Consensus 141 PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VD-GGI~~~~i~-~~~~aGad~~V~Gss~iF~~~~d~~~~ 211 (229)
T PRK09722 141 PGFAGQPFIPEMLDKIAELKALRERNGLEYLIE-------VD-GSCNQKTYE-KLMEAGADVFIVGTSGLFNLDEDIDEA 211 (229)
T ss_pred CCCcchhccHHHHHHHHHHHHHHHhcCCCeEEE-------EE-CCCCHHHHH-HHHHcCCCEEEEChHHHcCCCCCHHHH
Confidence 6662 2222222 2223334455444321 11 222222222 1222588877665 1 2 458899
Q ss_pred HHHHHHHHHHH
Q 006783 602 VSTLDKILHIN 612 (631)
Q Consensus 602 V~~L~~Il~r~ 612 (631)
++.|.+.+.+.
T Consensus 212 i~~l~~~~~~~ 222 (229)
T PRK09722 212 WDIMTAQIEAA 222 (229)
T ss_pred HHHHHHHHHHh
Confidence 99998876544
No 267
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=38.42 E-value=2.6e+02 Score=29.58 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=46.1
Q ss_pred C-CcEEEEecCCcc--cccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhh---hccccCcccc
Q 006783 519 N-PLGVMIARGDLA--VECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVA---SARRASCVML 592 (631)
Q Consensus 519 ~-~DGImIaRGDL~--veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva---~a~gaD~vmL 592 (631)
| +|||++. |=-| ..+..++-.++.+...+.+. ..+||++-+ +..+-.|.-+.+ ...|+|++|+
T Consensus 34 G~v~gi~~~-GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv---------~~~~t~~~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 34 MKVDGLYVG-GSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQV---------GSVNLKEAVELGKYATELGYDCLSA 102 (290)
T ss_pred CCcCEEEEC-CcccccccCCHHHHHHHHHHHHHHhC-CCCcEEEec---------CCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 6 8999885 2221 22333444444444444432 247888643 333444444433 3369999999
Q ss_pred c----CCccHHHHHHHHHHHHHH
Q 006783 593 N----KGKHVVEAVSTLDKILHI 611 (631)
Q Consensus 593 s----kG~ypveAV~~L~~Il~r 611 (631)
. ..+-.-+.+.....|+..
T Consensus 103 ~~P~y~~~~~~~i~~yf~~v~~~ 125 (290)
T TIGR00683 103 VTPFYYKFSFPEIKHYYDTIIAE 125 (290)
T ss_pred eCCcCCCCCHHHHHHHHHHHHhh
Confidence 6 344456777777777754
No 268
>PRK09389 (R)-citramalate synthase; Provisional
Probab=38.25 E-value=6.8e+02 Score=28.85 Aligned_cols=148 Identities=9% Similarity=0.062 Sum_probs=89.6
Q ss_pred CCChhcHHhHHHHH-h-cCCEEEEec-cCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcE-
Q 006783 447 GLTTKDLMDLEFVA-S-HADMVGISF-VRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLG- 522 (631)
Q Consensus 447 ~LTekD~~dl~f~~-~-~~D~V~~SF-V~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DG- 522 (631)
.+|.+++..|...+ + ++|.|-++| +.++.|.+.++.+.+. + .+..|.+-.-+. .+.++..+. + +.+.
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~-~-~~~~i~a~~r~~--~~di~~a~~-~----g~~~v 90 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDE-G-LNAEICSFARAV--KVDIDAALE-C----DVDSV 90 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhc-C-CCcEEEeecccC--HHHHHHHHh-C----CcCEE
Confidence 35667776665544 3 799998865 4788888888776543 3 245666655542 122343333 2 4455
Q ss_pred -EEEecCCcccc----cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccccc-
Q 006783 523 -VMIARGDLAVE----CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN- 593 (631)
Q Consensus 523 -ImIaRGDL~ve----ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs- 593 (631)
++++-.|+-++ ...++..+.-.+.+..|++.|..|.+.-. ..+..+..-+.+++.+ .|+|.+.|.
T Consensus 91 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e------d~~r~~~~~l~~~~~~~~~~Ga~~i~l~D 164 (488)
T PRK09389 91 HLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE------DASRADLDFLKELYKAGIEAGADRICFCD 164 (488)
T ss_pred EEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe------eCCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 44455565333 33456666777888999999988877432 3344444444444444 699999997
Q ss_pred -C-CccHHHHHHHHHHHH
Q 006783 594 -K-GKHVVEAVSTLDKIL 609 (631)
Q Consensus 594 -k-G~ypveAV~~L~~Il 609 (631)
. +-.|-+.-+....+.
T Consensus 165 TvG~~~P~~~~~lv~~l~ 182 (488)
T PRK09389 165 TVGILTPEKTYELFKRLS 182 (488)
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 3 456666655544443
No 269
>PRK08760 replicative DNA helicase; Provisional
Probab=38.18 E-value=2.3e+02 Score=32.42 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhh--CCCCChhhHHhhhhc-cccCccccc
Q 006783 537 ERLADMQEEILSICGAAHVPVIWATQVLESLVK--FGVPTRAEITDVASA-RRASCVMLN 593 (631)
Q Consensus 537 e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~--~~~PtRAEvtDva~a-~gaD~vmLs 593 (631)
..+.++-+.+-.+|+..++|||+.+|+=-...+ ...|..+.+.|-... +.||.||+-
T Consensus 362 ~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l 421 (476)
T PRK08760 362 TEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFI 421 (476)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEE
Confidence 467888889999999999999999998433322 346765544443333 689999875
No 270
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=38.10 E-value=65 Score=35.13 Aligned_cols=47 Identities=28% Similarity=0.484 Sum_probs=38.7
Q ss_pred EEEEecCCCCChHH-HHHHHHhC--CCEEEeecCCCChHHHHHHHHHHHH
Q 006783 172 HIMVTVGQEASESE-ISDILKAG--ASIIRINCAHGNPSIWSEIIRRVKT 218 (631)
Q Consensus 172 kImvTlgp~aa~~~-i~~Li~aG--MdvaRINcAHg~~e~w~~mI~~vR~ 218 (631)
-+.+.+|....+.+ +..|+++| .|+.=+..|||....-.++|+.+|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT 133 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH
Confidence 46666766444445 99999999 6999999999999988888888887
No 271
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=38.05 E-value=1e+02 Score=32.38 Aligned_cols=136 Identities=20% Similarity=0.237 Sum_probs=88.5
Q ss_pred ceecCCceeecCCCcccCCCCChhcHHhHHHHH-h-cCCEEEEeccC-----ChhHHHHHHHHHHHhCCCCceEEEeecC
Q 006783 428 TKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVA-S-HADMVGISFVR-----DSCDIAMLRKELEKRKVQNLGVVLKIET 500 (631)
Q Consensus 428 g~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~-~-~~D~V~~SFV~-----sa~Dv~~lr~~L~~~~~~~~~IiaKIEt 500 (631)
..|+..+|.+.|+ .-...+.+ + +||.|-+=-=. +-+||..+++.+.. =.-||-
T Consensus 10 AtLRnaR~~~~Pd------------~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~~~~--------~lNlE~ 69 (237)
T TIGR00559 10 ATLRNARGTNEPD------------PLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEALTT--------PFNIEM 69 (237)
T ss_pred hhhhhcCCCCCCC------------HHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCC--------CEEecc
Confidence 3567777777763 23334444 3 69999884222 34678888776642 112343
Q ss_pred hhhhcchHHHHHHhhcCCCCcEEEE---ecCCcccccChhh--HHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCCh
Q 006783 501 KSGFERLPHILLEAMKSSNPLGVMI---ARGDLAVECGWER--LADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTR 575 (631)
Q Consensus 501 ~~av~NL~eIl~~a~~~~~~DGImI---aRGDL~veig~e~--l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtR 575 (631)
. --+|++.-+.+- .||-|-+ .|..+..|=|+.- -...-+.++...+++|+.|=+- --|..
T Consensus 70 a----~~~emi~ia~~v-kP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLF----------iDP~~ 134 (237)
T TIGR00559 70 A----PTEEMIRIAEEI-KPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLF----------IDADK 134 (237)
T ss_pred C----CCHHHHHHHHHc-CCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEE----------eCCCH
Confidence 2 123555554433 3788887 7899999999853 4556678889999999999531 15664
Q ss_pred hhHHhhhhccccCcccccCCccHH
Q 006783 576 AEITDVASARRASCVMLNKGKHVV 599 (631)
Q Consensus 576 AEvtDva~a~gaD~vmLskG~ypv 599 (631)
|--+.+...|||+|=|-+|+|--
T Consensus 135 -~qi~~A~~~GAd~VELhTG~YA~ 157 (237)
T TIGR00559 135 -DQISAAAEVGADRIEIHTGPYAN 157 (237)
T ss_pred -HHHHHHHHhCcCEEEEechhhhc
Confidence 33446666899999999999953
No 272
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=37.92 E-value=1.2e+02 Score=30.23 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=38.7
Q ss_pred hhcCCCCCCCCeEEEEecCCCCChHH---HHHHHHhCCCEEEeecCC---------------CChHHHHHHHHHHHHH
Q 006783 160 LLLGPLRHNQTNHIMVTVGQEASESE---ISDILKAGASIIRINCAH---------------GNPSIWSEIIRRVKTS 219 (631)
Q Consensus 160 ~l~G~~~~~R~TkImvTlgp~aa~~~---i~~Li~aGMdvaRINcAH---------------g~~e~w~~mI~~vR~a 219 (631)
.+++.. .-...+++.|+....++- .+.+.++|.|..=|||+| ..++.-.++++.+|++
T Consensus 46 ~~~~~~--~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~ 121 (231)
T cd02801 46 RLLTRN--PEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA 121 (231)
T ss_pred HhhccC--ccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh
Confidence 455543 345678999976544432 677777899999999999 3455555666666553
No 273
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=37.72 E-value=4.4e+02 Score=26.53 Aligned_cols=132 Identities=17% Similarity=0.119 Sum_probs=68.7
Q ss_pred hhcHHhHHHHHh-cCCEEEE-eccCChh------HHHHHHHHHHHhCCCCceEEEeecC------------hhhhcchHH
Q 006783 450 TKDLMDLEFVAS-HADMVGI-SFVRDSC------DIAMLRKELEKRKVQNLGVVLKIET------------KSGFERLPH 509 (631)
Q Consensus 450 ekD~~dl~f~~~-~~D~V~~-SFV~sa~------Dv~~lr~~L~~~~~~~~~IiaKIEt------------~~av~NL~e 509 (631)
+.....++.+++ ++|.|.+ -+..... ++.++++...+.+ +.+|. |. .+-++..-.
T Consensus 76 ~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g---~~~ii--e~~~~g~~~~~~~~~~~i~~~~~ 150 (235)
T cd00958 76 KVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYG---LPLIA--WMYPRGPAVKNEKDPDLIAYAAR 150 (235)
T ss_pred hhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcC---CCEEE--EEeccCCcccCccCHHHHHHHHH
Confidence 334445677776 7887744 1122222 4555555444443 44444 33 222222222
Q ss_pred HHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhh---HHhhhhccc
Q 006783 510 ILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAE---ITDVASARR 586 (631)
Q Consensus 510 Il~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAE---vtDva~a~g 586 (631)
+.... |+|-|-+.. ..+.+. +-+.++...+||+++--+ +..|..+ ....+...|
T Consensus 151 ~a~~~----GaD~Ik~~~-----~~~~~~-------~~~i~~~~~~pvv~~GG~-------~~~~~~~~l~~~~~~~~~G 207 (235)
T cd00958 151 IGAEL----GADIVKTKY-----TGDAES-------FKEVVEGCPVPVVIAGGP-------KKDSEEEFLKMVYDAMEAG 207 (235)
T ss_pred HHHHH----CCCEEEecC-----CCCHHH-------HHHHHhcCCCCEEEeCCC-------CCCCHHHHHHHHHHHHHcC
Confidence 23233 789998841 112222 223345567998653210 1233332 222334479
Q ss_pred cCccccc----CCccHHHHHHHHHHHH
Q 006783 587 ASCVMLN----KGKHVVEAVSTLDKIL 609 (631)
Q Consensus 587 aD~vmLs----kG~ypveAV~~L~~Il 609 (631)
++++... .-+.|.++++.+.+|.
T Consensus 208 a~gv~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 208 AAGVAVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred CcEEEechhhhcCCCHHHHHHHHHHHh
Confidence 9998876 6777999999988875
No 274
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=37.71 E-value=5e+02 Score=27.16 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=68.9
Q ss_pred cHHhHHHHH-h-cCCEEEE-----eccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEE
Q 006783 452 DLMDLEFVA-S-HADMVGI-----SFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVM 524 (631)
Q Consensus 452 D~~dl~f~~-~-~~D~V~~-----SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGIm 524 (631)
|..++.... + +|+.|.+ -|-.+.+|+..+++.. ++.|+.|= =+-.--+|-.. +..|.|+|-
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v------~iPvl~kd----fi~~~~qi~~a--~~~GAD~Vl 138 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV------SLPVLRKD----FIIDPYQIYEA--RAAGADAIL 138 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc------CCCEEeee----ecCCHHHHHHH--HHcCCCEEE
Confidence 555555443 3 6888877 5668899999998753 46677541 11111122211 123789999
Q ss_pred EecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 525 IARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 525 IaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
+-=.+|.. .--++++..|+..|.-+++- .-+.+|+. .+...|+|.+.+|
T Consensus 139 Li~~~l~~--------~~l~~li~~a~~lGl~~lve-----------vh~~~E~~-~A~~~gadiIgin 187 (260)
T PRK00278 139 LIVAALDD--------EQLKELLDYAHSLGLDVLVE-----------VHDEEELE-RALKLGAPLIGIN 187 (260)
T ss_pred EEeccCCH--------HHHHHHHHHHHHcCCeEEEE-----------eCCHHHHH-HHHHcCCCEEEEC
Confidence 87666542 35577888999999988874 33445542 2334599988887
No 275
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=37.71 E-value=4.9e+02 Score=27.05 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=85.0
Q ss_pred CCChhcHHhHHHHH-h-cCCEEEEeccC-ChhHHHHHHHHHHHhCCCCceEEEee-cChhhhcchHHHHHHhhcCCCCcE
Q 006783 447 GLTTKDLMDLEFVA-S-HADMVGISFVR-DSCDIAMLRKELEKRKVQNLGVVLKI-ETKSGFERLPHILLEAMKSSNPLG 522 (631)
Q Consensus 447 ~LTekD~~dl~f~~-~-~~D~V~~SFV~-sa~Dv~~lr~~L~~~~~~~~~IiaKI-Et~~av~NL~eIl~~a~~~~~~DG 522 (631)
.++.+++..+--.+ + ++|.|-+.|.. +++|.+.++.+-+ .. .+..+.+-+ -+...+ +..+. +.+..++|.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~-~~-~~~~~~~l~r~~~~~v---~~a~~-~~~~~~~~~ 89 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAR-EV-LNAEICGLARAVKKDI---DAAAE-ALKPAKVDR 89 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHH-hC-CCCEEEEEccCCHhhH---HHHHH-hCCCCCCCE
Confidence 45667776665544 3 89999886654 8888877665543 22 345555554 223333 33332 211112566
Q ss_pred EEEe--cCCcc----cccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccccc
Q 006783 523 VMIA--RGDLA----VECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN 593 (631)
Q Consensus 523 ImIa--RGDL~----veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs 593 (631)
|-|. =.|.- ...+.++....-++++..|++.|..|.+.. ...+.-+.+.+.+++.. .|+|.+.|.
T Consensus 90 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 163 (268)
T cd07940 90 IHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA------EDATRTDLDFLIEVVEAAIEAGATTINIP 163 (268)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee------ecCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 5552 22222 122334455566678889999998877521 23333455555554433 699999997
Q ss_pred --CC-ccHHHHHHHHHHHHH
Q 006783 594 --KG-KHVVEAVSTLDKILH 610 (631)
Q Consensus 594 --kG-~ypveAV~~L~~Il~ 610 (631)
.| -+|.+.-+.+..+-+
T Consensus 164 DT~G~~~P~~v~~lv~~l~~ 183 (268)
T cd07940 164 DTVGYLTPEEFGELIKKLKE 183 (268)
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 44 467666655555543
No 276
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=37.67 E-value=3.7e+02 Score=30.05 Aligned_cols=126 Identities=12% Similarity=0.086 Sum_probs=65.8
Q ss_pred ccCCCCChhcHHhHH-HHHh-cCCEEEEeccC-ChhHHHHHHHHHHHhCCCCceEEEeecChhh-hcchHHHHHHhhcCC
Q 006783 443 IHFEGLTTKDLMDLE-FVAS-HADMVGISFVR-DSCDIAMLRKELEKRKVQNLGVVLKIETKSG-FERLPHILLEAMKSS 518 (631)
Q Consensus 443 l~lp~LTekD~~dl~-f~~~-~~D~V~~SFV~-sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~a-v~NL~eIl~~a~~~~ 518 (631)
+-+..++.++...+- -+++ ++|+|-+++-. +....+.++++.+..+ ...|+.=+....+ -..++.. ..+
T Consensus 8 ~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~--~~~ii~D~kl~d~g~~~v~~a-~~a---- 80 (430)
T PRK07028 8 VALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFP--DHTIVADMKTMDTGAIEVEMA-AKA---- 80 (430)
T ss_pred EEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCC--CCEEEEEeeeccchHHHHHHH-HHc----
Confidence 334445555554443 3455 69999775422 2445666666554433 3455544333221 1133332 223
Q ss_pred CCcEEEE-ecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 519 NPLGVMI-ARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 519 ~~DGImI-aRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
|.|+|.+ +-.| + ..-++++..|+++|+++++.. + ..+|..|....+...|+|.+.+.
T Consensus 81 GAdgV~v~g~~~-------~---~~~~~~i~~a~~~G~~~~~g~--~------s~~t~~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 81 GADIVCILGLAD-------D---STIEDAVRAARKYGVRLMADL--I------NVPDPVKRAVELEELGVDYINVH 138 (430)
T ss_pred CCCEEEEecCCC-------h---HHHHHHHHHHHHcCCEEEEEe--c------CCCCHHHHHHHHHhcCCCEEEEE
Confidence 6899997 3211 0 113678889999999998621 0 12333332223333689988765
No 277
>PLN02417 dihydrodipicolinate synthase
Probab=37.35 E-value=2.6e+02 Score=29.36 Aligned_cols=82 Identities=11% Similarity=0.191 Sum_probs=43.8
Q ss_pred CCcEEEEecCCcc--cccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccccc
Q 006783 519 NPLGVMIARGDLA--VECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN 593 (631)
Q Consensus 519 ~~DGImIaRGDL~--veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs 593 (631)
|++||++. |=-| ..+..++-..+-+..++. .+-.+|||.-+ +.++-.|..+.+.. .|+|++|+.
T Consensus 35 Gv~Gi~~~-GstGE~~~ls~~Er~~~~~~~~~~-~~~~~pvi~gv---------~~~~t~~~i~~a~~a~~~Gadav~~~ 103 (280)
T PLN02417 35 GAEGLIVG-GTTGEGQLMSWDEHIMLIGHTVNC-FGGKIKVIGNT---------GSNSTREAIHATEQGFAVGMHAALHI 103 (280)
T ss_pred CCCEEEEC-ccCcchhhCCHHHHHHHHHHHHHH-hCCCCcEEEEC---------CCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 78999984 2111 122223333333333332 22346888643 34455555554443 699999997
Q ss_pred C----CccHHHHHHHHHHHHHH
Q 006783 594 K----GKHVVEAVSTLDKILHI 611 (631)
Q Consensus 594 k----G~ypveAV~~L~~Il~r 611 (631)
- .+-.-+.++....|+..
T Consensus 104 ~P~y~~~~~~~i~~~f~~va~~ 125 (280)
T PLN02417 104 NPYYGKTSQEGLIKHFETVLDM 125 (280)
T ss_pred CCccCCCCHHHHHHHHHHHHhh
Confidence 2 22245666777777653
No 278
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=37.34 E-value=4.7e+02 Score=26.74 Aligned_cols=129 Identities=19% Similarity=0.159 Sum_probs=76.0
Q ss_pred cHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhh-------hcchHHHHHHhhcCCCCcEE
Q 006783 452 DLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSG-------FERLPHILLEAMKSSNPLGV 523 (631)
Q Consensus 452 D~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~a-------v~NL~eIl~~a~~~~~~DGI 523 (631)
+.++++..+. +++.|.++.. ...+ ..+++.+++.+. -.|++-|....+ ..++.+++..- ... ++.+
T Consensus 89 ~~edv~~~l~~Ga~~viigt~-~~~~-~~~~~~~~~~~~--~~iivslD~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~l 162 (233)
T cd04723 89 SLENAQEWLKRGASRVIVGTE-TLPS-DDDEDRLAALGE--QRLVLSLDFRGGQLLKPTDFIGPEELLRRL-AKW-PEEL 162 (233)
T ss_pred CHHHHHHHHHcCCCeEEEcce-eccc-hHHHHHHHhcCC--CCeEEEEeccCCeeccccCcCCHHHHHHHH-HHh-CCeE
Confidence 4677777666 7887777644 2334 566666766652 146666665544 23355554433 122 4677
Q ss_pred EEecCCccccc--ChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCcc
Q 006783 524 MIARGDLAVEC--GWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKH 597 (631)
Q Consensus 524 mIaRGDL~vei--g~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~y 597 (631)
++. |+..+- .-..+. .+-..|+...+|++++. +.=|..++..+.+ .|+++|+++ .|.+
T Consensus 163 i~~--di~~~G~~~g~~~~----~~~~i~~~~~ipvi~~G---------Gi~s~edi~~l~~-~G~~~vivGsal~~g~~ 226 (233)
T cd04723 163 IVL--DIDRVGSGQGPDLE----LLERLAARADIPVIAAG---------GVRSVEDLELLKK-LGASGALVASALHDGGL 226 (233)
T ss_pred EEE--EcCccccCCCcCHH----HHHHHHHhcCCCEEEeC---------CCCCHHHHHHHHH-cCCCEEEEehHHHcCCC
Confidence 774 332221 111221 12234556789999866 6777777777666 499999997 6877
Q ss_pred HHHHH
Q 006783 598 VVEAV 602 (631)
Q Consensus 598 pveAV 602 (631)
+.+.+
T Consensus 227 ~~~~~ 231 (233)
T cd04723 227 TLEDV 231 (233)
T ss_pred CHHHH
Confidence 76644
No 279
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=37.32 E-value=64 Score=26.28 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=24.5
Q ss_pred CCCCcEEEeCCeEEEEEEEEeCCEEEEEEE
Q 006783 392 KPGEPIAFDDGKIWGLIQGASISEIVVSIT 421 (631)
Q Consensus 392 ~~Gd~I~iDDGkI~~~V~~v~~~~i~~~V~ 421 (631)
++|+.|.|+| .|..+|.+++++.+..-|+
T Consensus 7 k~gE~I~Ig~-~I~I~Vl~i~~~~VklgI~ 35 (54)
T PF02599_consen 7 KVGESIVIGD-DIEITVLEISGGQVKLGID 35 (54)
T ss_dssp ETT-EEEETT-TEEEEEEEEETTEEEEEEE
T ss_pred cCCCEEEECC-CEEEEEEEEcCCEEEEEEE
Confidence 7899999987 8999999999998887765
No 280
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=37.00 E-value=3.7e+02 Score=28.07 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=54.4
Q ss_pred hHHHHHh-cCCEEEEe------ccCChhHHHHHHHHHHHhCCCCceEEEeecC---hhhhcchHHHHHHhhcCCCCcEEE
Q 006783 455 DLEFVAS-HADMVGIS------FVRDSCDIAMLRKELEKRKVQNLGVVLKIET---KSGFERLPHILLEAMKSSNPLGVM 524 (631)
Q Consensus 455 dl~f~~~-~~D~V~~S------FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt---~~av~NL~eIl~~a~~~~~~DGIm 524 (631)
.++|.++ ++|.|.+. +--|.++=.++-+...+....++.||+-+-. .++++..... . ..|.||+|
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a-~----~~Gad~v~ 101 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHA-Q----DAGADAVL 101 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHH-H----HTT-SEEE
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHH-h----hcCceEEE
Confidence 4567665 69988873 3334444444444433322256888888854 4455444332 2 23789999
Q ss_pred EecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEe
Q 006783 525 IARGDLAVECGWERLADMQEEILSICGAAHVPVIWAT 561 (631)
Q Consensus 525 IaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~AT 561 (631)
|.+-.... ...+.+.+.- -..|.+.++|+++-.
T Consensus 102 v~~P~~~~-~s~~~l~~y~---~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 102 VIPPYYFK-PSQEELIDYF---RAIADATDLPIIIYN 134 (289)
T ss_dssp EEESTSSS-CCHHHHHHHH---HHHHHHSSSEEEEEE
T ss_pred Eecccccc-chhhHHHHHH---HHHHhhcCCCEEEEE
Confidence 87554432 3345555444 444577889998743
No 281
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=36.87 E-value=4e+02 Score=25.84 Aligned_cols=85 Identities=19% Similarity=0.134 Sum_probs=48.8
Q ss_pred HHHHHh-cCCEEEE-----eccCCh----hHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEE
Q 006783 456 LEFVAS-HADMVGI-----SFVRDS----CDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMI 525 (631)
Q Consensus 456 l~f~~~-~~D~V~~-----SFV~sa----~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImI 525 (631)
++.+.+ ++|+|.+ +|+.+. +.++.+++.. + ..+.+-.++.++.. .++.+. .+ |.|||.|
T Consensus 18 ~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~-~~~~v~l~~~d~~~--~~~~~~-~~----g~dgv~v 86 (211)
T cd00429 18 LKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---D-LPLDVHLMVENPER--YIEAFA-KA----GADIITF 86 (211)
T ss_pred HHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC---C-CcEEEEeeeCCHHH--HHHHHH-Hc----CCCEEEE
Confidence 445566 6999999 777544 3444444332 1 22335567766532 244444 33 7899877
Q ss_pred ecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEe
Q 006783 526 ARGDLAVECGWERLADMQEEILSICGAAHVPVIWAT 561 (631)
Q Consensus 526 aRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~AT 561 (631)
-=+ .. ....+.++.+++.|+-+++.+
T Consensus 87 h~~-------~~---~~~~~~~~~~~~~~~~~g~~~ 112 (211)
T cd00429 87 HAE-------AT---DHLHRTIQLIKELGMKAGVAL 112 (211)
T ss_pred Ccc-------ch---hhHHHHHHHHHHCCCeEEEEe
Confidence 311 11 122355888899999888764
No 282
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=36.53 E-value=2e+02 Score=32.01 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=30.5
Q ss_pred HHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc----C--CccHHHHHHHHHHHHH
Q 006783 550 CGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN----K--GKHVVEAVSTLDKILH 610 (631)
Q Consensus 550 c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs----k--G~ypveAV~~L~~Il~ 610 (631)
+++.+.|||. ..++-+- +|++.| .|||+||+. . +.+-.+.|.-.-++++
T Consensus 285 ~~~~~~~vi~---------dGGIr~g---~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~ 341 (361)
T cd04736 285 VAATYKPVLI---------DSGIRRG---SDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLK 341 (361)
T ss_pred HHHhCCeEEE---------eCCCCCH---HHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3445689887 4456554 567777 699999997 2 2345555554444444
No 283
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=36.51 E-value=1.2e+02 Score=31.85 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=43.3
Q ss_pred CCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----C
Q 006783 519 NPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----K 594 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----k 594 (631)
|+..||--=.=.|.-.|+..-.. -+. .+++..+|||+ ..|+-+.+++. .+|-.|+|+|++| +
T Consensus 144 GcaavMPlgsPIGSg~Gi~n~~~-l~~---i~~~~~vPvIv---------DAGiG~pSdaa-~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 144 GCAAVMPLGSPIGSGRGIQNPYN-LRI---IIERADVPVIV---------DAGIGTPSDAA-QAMELGADAVLVNTAIAK 209 (247)
T ss_dssp T-SEBEEBSSSTTT---SSTHHH-HHH---HHHHGSSSBEE---------ES---SHHHHH-HHHHTT-SEEEESHHHHT
T ss_pred CCCEEEecccccccCcCCCCHHH-HHH---HHHhcCCcEEE---------eCCCCCHHHHH-HHHHcCCceeehhhHHhc
Confidence 34566654344444444443322 222 34666999998 55666655422 3444799999999 8
Q ss_pred CccHHHHHHHHHHHHH
Q 006783 595 GKHVVEAVSTLDKILH 610 (631)
Q Consensus 595 G~ypveAV~~L~~Il~ 610 (631)
.+.|+.--+.+..-..
T Consensus 210 A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 210 AKDPVAMARAFKLAVE 225 (247)
T ss_dssp SSSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999987777765444
No 284
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=36.47 E-value=4.1e+02 Score=25.86 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=64.7
Q ss_pred HHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccc-
Q 006783 456 LEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVE- 533 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve- 533 (631)
++.+.+ ++|+|.+.--.+ ++.....+.++..+ ..+.+. ++.....+.+.++... +|.|.+..-+-+..
T Consensus 72 ~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g-~~~~~~--~~~~t~~e~~~~~~~~------~d~i~~~~~~~g~tg 141 (210)
T TIGR01163 72 IEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLG-AKAGIV--LNPATPLEFLEYVLPD------VDLVLLMSVNPGFGG 141 (210)
T ss_pred HHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcC-CcEEEE--ECCCCCHHHHHHHHhh------CCEEEEEEEcCCCCc
Confidence 555555 799988865443 44444445566555 233333 4443446666666543 48887754332221
Q ss_pred --cChhhHHHHHHHHHHHHHhc--CCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHHH
Q 006783 534 --CGWERLADMQEEILSICGAA--HVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVST 604 (631)
Q Consensus 534 --ig~e~l~~~Qk~Ii~~c~aa--gkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~~ 604 (631)
.....+ +.-+++-..++.. ++|+.++. |+ +...+..+. ..|+|++.+. .-+-|.++++.
T Consensus 142 ~~~~~~~~-~~i~~i~~~~~~~~~~~~i~v~G---------GI-~~env~~l~-~~gad~iivgsai~~~~d~~~~~~~ 208 (210)
T TIGR01163 142 QKFIPDTL-EKIREVRKMIDENGLSILIEVDG---------GV-NDDNARELA-EAGADILVAGSAIFGADDYKEVIRS 208 (210)
T ss_pred ccccHHHH-HHHHHHHHHHHhcCCCceEEEEC---------Cc-CHHHHHHHH-HcCCCEEEEChHHhCCCCHHHHHHH
Confidence 112222 2223343444433 36776644 33 322322222 4689988876 23447666654
No 285
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=36.43 E-value=55 Score=35.48 Aligned_cols=123 Identities=21% Similarity=0.169 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhCCCCceEEEeecChhhh--cchHHHHHHhhcCCCCcEEEEecCCccc-ccCh----hhHHHHHHHHHHH
Q 006783 477 IAMLRKELEKRKVQNLGVVLKIETKSGF--ERLPHILLEAMKSSNPLGVMIARGDLAV-ECGW----ERLADMQEEILSI 549 (631)
Q Consensus 477 v~~lr~~L~~~~~~~~~IiaKIEt~~av--~NL~eIl~~a~~~~~~DGImIaRGDL~v-eig~----e~l~~~Qk~Ii~~ 549 (631)
|.-+|+.|...+ .+.+.+-|--.-|+ +++-+++.+... -|+-+-.-|=.. +-+| +|+..+++-+-+.
T Consensus 2 I~G~R~~lgv~~--RPL~~tiiKP~~Glsp~~~a~~~y~~a~----GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a 75 (309)
T PF00016_consen 2 IEGIRELLGVYD--RPLLGTIIKPKLGLSPEELAELAYEFAL----GGVDFIKDDENLANQPFCPFEERVPACMEAVDRA 75 (309)
T ss_dssp HHHHHHHHTSSS--S-EEEEEESSSSTS-HHHHHHHHHHHHH----TTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHH
T ss_pred ceeeehhhhhcc--ceEEccccCcceeecccchhhHHHhhhh----cccceecccccccCcccccHhHhHHhhhhhhhcc
Confidence 456777776443 34444444433344 567777766532 234233333332 2233 6888888888888
Q ss_pred HHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCcccccCCccHHHHHHHHHHHHHHH
Q 006783 550 CGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLNKGKHVVEAVSTLDKILHIN 612 (631)
Q Consensus 550 c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLskG~ypveAV~~L~~Il~r~ 612 (631)
.++-|++++.+.++- -|+-.|+.+-+.. .|++|+|++...+-..+++.|...+++.
T Consensus 76 ~~eTG~~~ly~~NiT-------~~~~~em~~ra~~a~~~G~~~vmv~~~~~G~~~~~~l~~~~~~~ 134 (309)
T PF00016_consen 76 EEETGEKKLYAANIT-------ADTPDEMIERAEYAKEAGANAVMVNVLTAGFSALQSLAEDARDN 134 (309)
T ss_dssp HHHHSS--EEEEEE--------SSSHHHHHHHHHHHHHHTGSEEEEEHHHHCHHHHHHHHHHHHHH
T ss_pred ccccceecceecccc-------cccHHHHHHhhhhhhhhccchhhcccccccccccchhhhhhccc
Confidence 888999999877543 5666677775544 6999999995555556777777777663
No 286
>PRK14017 galactonate dehydratase; Provisional
Probab=36.30 E-value=1.4e+02 Score=32.72 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=51.5
Q ss_pred HhhcCCCCCCCCeEEEEecCCCCChH--H-HHHHHHhCCCEEEeecC-----CCChHHHHHHHHHHHHHHhhcCCceEEE
Q 006783 159 ELLLGPLRHNQTNHIMVTVGQEASES--E-ISDILKAGASIIRINCA-----HGNPSIWSEIIRRVKTSSQMLEMPCQIL 230 (631)
Q Consensus 159 ~~l~G~~~~~R~TkImvTlgp~aa~~--~-i~~Li~aGMdvaRINcA-----Hg~~e~w~~mI~~vR~a~~~~g~~~~Il 230 (631)
-.|||.... .+..+.++++....++ + ++++.+.|.+.+-|-.. .+.+..+.+-++.|+.+.+.+|..+.|+
T Consensus 103 ~~LLGg~~r-~~i~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~ 181 (382)
T PRK14017 103 HELLGGLVR-DRIRVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIG 181 (382)
T ss_pred HHHcCCCcc-ceeeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 456675422 3455666775432222 2 88888999999999752 1234556777888888888899889999
Q ss_pred ecCCC
Q 006783 231 MDLAG 235 (631)
Q Consensus 231 mDL~G 235 (631)
+|--+
T Consensus 182 vDaN~ 186 (382)
T PRK14017 182 VDFHG 186 (382)
T ss_pred EECCC
Confidence 99643
No 287
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=36.29 E-value=5e+02 Score=26.74 Aligned_cols=130 Identities=14% Similarity=0.096 Sum_probs=74.6
Q ss_pred HHHHHh-cCCEEEEeccC----------ChhHHHHHHHHHHHhCCCCceEEE-------ee------cChhhhcchHHHH
Q 006783 456 LEFVAS-HADMVGISFVR----------DSCDIAMLRKELEKRKVQNLGVVL-------KI------ETKSGFERLPHIL 511 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV~----------sa~Dv~~lr~~L~~~~~~~~~Iia-------KI------Et~~av~NL~eIl 511 (631)
++.+.+ +.|.|-++.-. +.+++..+++.+++.|.. +.-++ -+ ...++++.+...+
T Consensus 22 l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i 100 (279)
T TIGR00542 22 LQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVR-IPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAI 100 (279)
T ss_pred HHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCC-ceeeecCCCccCcCCCcCHHHHHHHHHHHHHHH
Confidence 556666 78999776322 467888999999988732 22111 01 1123566677766
Q ss_pred HHhhcCCCCcEEEEecCCcccc----cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhcccc
Q 006783 512 LEAMKSSNPLGVMIARGDLAVE----CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRA 587 (631)
Q Consensus 512 ~~a~~~~~~DGImIaRGDL~ve----ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~ga 587 (631)
..+- .-|...|.+.-++...+ -.++.+.+..+++...|+++|+.+.+ |.+-.....|-.+..++....+.
T Consensus 101 ~~a~-~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~l-----E~~~~~~~~t~~~~~~li~~v~~ 174 (279)
T TIGR00542 101 QLAR-DLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAV-----EIMDTPFMSSISKWLKWDHYLNS 174 (279)
T ss_pred HHHH-HhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEE-----eeCCCchhcCHHHHHHHHHHcCC
Confidence 5542 22566776653332211 12456777778889999999998775 43322334454555555555454
Q ss_pred Ccccc
Q 006783 588 SCVML 592 (631)
Q Consensus 588 D~vmL 592 (631)
+.+-+
T Consensus 175 ~~v~~ 179 (279)
T TIGR00542 175 PWFTL 179 (279)
T ss_pred CceEE
Confidence 54444
No 288
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=36.17 E-value=60 Score=37.14 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=37.5
Q ss_pred ChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEec
Q 006783 182 SESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMD 232 (631)
Q Consensus 182 a~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmD 232 (631)
...+ ++.|+++|+++.=|.+|||.++.-.+||+.||.. + ..+.|+.+
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~---~-~~~~vi~g 272 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRAL---D-LGVPIVAG 272 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHH---C-CCCeEEEe
Confidence 3445 9999999999999999999999989999988863 2 23556553
No 289
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=36.10 E-value=1.8e+02 Score=26.13 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=39.5
Q ss_pred CCeEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChH----------HHHHHHHHHHHHHhh
Q 006783 169 QTNHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPS----------IWSEIIRRVKTSSQM 222 (631)
Q Consensus 169 R~TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e----------~w~~mI~~vR~a~~~ 222 (631)
...+|..+..+..-+++ ++.|.+.|++.+.+++-..+++ .|.++++.++.+.+.
T Consensus 75 ~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 139 (166)
T PF04055_consen 75 RGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEA 139 (166)
T ss_dssp TTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHT
T ss_pred cccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHc
Confidence 44555554444333355 9999999999999999999997 566677777776654
No 290
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=35.96 E-value=4.2e+02 Score=27.79 Aligned_cols=107 Identities=10% Similarity=0.079 Sum_probs=57.9
Q ss_pred hHHHHHh-cCCEEEEe------ccCChhHHHHHHHHHHHhCCCCceEEEeecC---hhhhcchHHHHHHhhcCCCCcEEE
Q 006783 455 DLEFVAS-HADMVGIS------FVRDSCDIAMLRKELEKRKVQNLGVVLKIET---KSGFERLPHILLEAMKSSNPLGVM 524 (631)
Q Consensus 455 dl~f~~~-~~D~V~~S------FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt---~~av~NL~eIl~~a~~~~~~DGIm 524 (631)
.+++.++ ++|.|.+. +--|.++=.++-+...+.-..++.||+-+-. .++++.... + ...|.||||
T Consensus 24 ~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~----a-~~~Gad~v~ 98 (285)
T TIGR00674 24 LIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKF----A-EDVGADGFL 98 (285)
T ss_pred HHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHH----H-HHcCCCEEE
Confidence 3456565 78988773 3344444444444433332246778888742 333332222 2 233789999
Q ss_pred EecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEE-----------echhhhhhhC
Q 006783 525 IARGDLAVECGWERLADMQEEILSICGAAHVPVIWA-----------TQVLESLVKF 570 (631)
Q Consensus 525 IaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~A-----------TQvLESM~~~ 570 (631)
+.+-... ..+-+.+...-+ ..|++.+.|+++- .++++.|++.
T Consensus 99 v~pP~y~-~~~~~~i~~~~~---~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 151 (285)
T TIGR00674 99 VVTPYYN-KPTQEGLYQHFK---AIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEE 151 (285)
T ss_pred EcCCcCC-CCCHHHHHHHHH---HHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcC
Confidence 9765432 122344444444 4455668888853 2466777653
No 291
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=35.79 E-value=7.6e+02 Score=28.72 Aligned_cols=160 Identities=14% Similarity=0.098 Sum_probs=88.9
Q ss_pred CCChhcHHhHHHHHh--cCCEEEEec-cCChhHHHHHHHHHHHhCCCCceEEEeecC-hhhhcch-HHHHHHhhcCCCCc
Q 006783 447 GLTTKDLMDLEFVAS--HADMVGISF-VRDSCDIAMLRKELEKRKVQNLGVVLKIET-KSGFERL-PHILLEAMKSSNPL 521 (631)
Q Consensus 447 ~LTekD~~dl~f~~~--~~D~V~~SF-V~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt-~~av~NL-~eIl~~a~~~~~~D 521 (631)
.+|.+++..|...+. ++|.|-++| .-++.|.+.++.+.. .+..+..+.+-.=+ ...+..- +.-+..+ ...+.+
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~-~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~-~~~g~~ 100 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKE-LKLKHAKLAAFGSTRRAGVSAEEDPNLQAL-LDAGTP 100 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHH-hCCCCcEEEEEeeccccCCCcccHHHHHHH-HhCCCC
Confidence 467777777665553 799999988 568888877766543 22223344443211 2223211 1111111 112345
Q ss_pred EEEE--ecCCcccc----cChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhh---hccccCcccc
Q 006783 522 GVMI--ARGDLAVE----CGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVA---SARRASCVML 592 (631)
Q Consensus 522 GImI--aRGDL~ve----ig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva---~a~gaD~vmL 592 (631)
.|-| .-.|+-.+ ...++..+.-++.+..++++|..|.+.+. ..-....-+..-+.+++ ...|+|.+.|
T Consensus 101 ~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e---~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l 177 (524)
T PRK12344 101 VVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAE---HFFDGYKANPEYALATLKAAAEAGADWVVL 177 (524)
T ss_pred EEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccc---cccccccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 5444 44454332 33467777888899999999998866331 11111122233233444 3469999999
Q ss_pred c--C-CccHHHHHHHHHHHHHH
Q 006783 593 N--K-GKHVVEAVSTLDKILHI 611 (631)
Q Consensus 593 s--k-G~ypveAV~~L~~Il~r 611 (631)
. . .-+|.+.-+....+.+.
T Consensus 178 ~DTvG~~~P~~v~~li~~l~~~ 199 (524)
T PRK12344 178 CDTNGGTLPHEVAEIVAEVRAA 199 (524)
T ss_pred ccCCCCcCHHHHHHHHHHHHHh
Confidence 7 3 45777776666666554
No 292
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=35.72 E-value=80 Score=34.94 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=54.2
Q ss_pred cHHhHHHHHh---cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecC
Q 006783 452 DLMDLEFVAS---HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARG 528 (631)
Q Consensus 452 D~~dl~f~~~---~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRG 528 (631)
|.++++++++ .+|++.+.| ... .+.-+.+++......+..|++-..+.+--+-.=+++.. |+|||++...
T Consensus 83 ~~~~~~~a~~~~~~~~~~iv~~-~Dw-~iIPlEnliA~~~~~~~~i~a~v~~~~eA~~~~~~LE~-----G~dGVll~~~ 155 (354)
T PF01959_consen 83 DKEDEEEACELAKRADYVIVEF-RDW-TIIPLENLIAALQGSSTKIIAVVADAEEARVALEVLEK-----GVDGVLLDPD 155 (354)
T ss_pred CHHHHHHHHHHhccCCeEEEEc-CCC-cEecHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHhc-----CCCeEEECCC
Confidence 4556666554 589999998 333 36677788876655678899999999888877777764 6899999977
Q ss_pred Cc
Q 006783 529 DL 530 (631)
Q Consensus 529 DL 530 (631)
|.
T Consensus 156 d~ 157 (354)
T PF01959_consen 156 DP 157 (354)
T ss_pred CH
Confidence 64
No 293
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=35.13 E-value=4.7e+02 Score=27.69 Aligned_cols=96 Identities=7% Similarity=0.010 Sum_probs=49.8
Q ss_pred hHHHHHh-c-CCEEEEe------ccCChhHHHHHHHHHHHhCCCCceEEEeec---ChhhhcchHHHHHHhhcCCCCcEE
Q 006783 455 DLEFVAS-H-ADMVGIS------FVRDSCDIAMLRKELEKRKVQNLGVVLKIE---TKSGFERLPHILLEAMKSSNPLGV 523 (631)
Q Consensus 455 dl~f~~~-~-~D~V~~S------FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIE---t~~av~NL~eIl~~a~~~~~~DGI 523 (631)
.++|.++ + +|.|.+. +.-|.++-.++-+...+.-..++.||+-+- |.++++.... ... .|.|||
T Consensus 26 ~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~-a~~----~Gad~v 100 (290)
T TIGR00683 26 IIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKY-ATE----LGYDCL 100 (290)
T ss_pred HHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHH-HHH----hCCCEE
Confidence 4556554 6 8888665 444555555554444333234577888875 3444443333 222 278999
Q ss_pred EEecCCcccccChhhHHHHHHHHHHHHHhc-CCCEEE
Q 006783 524 MIARGDLAVECGWERLADMQEEILSICGAA-HVPVIW 559 (631)
Q Consensus 524 mIaRGDL~veig~e~l~~~Qk~Ii~~c~aa-gkPvi~ 559 (631)
|+.+-..-- ..-+.+...-++ .|.+. +.|+++
T Consensus 101 ~v~~P~y~~-~~~~~i~~yf~~---v~~~~~~lpv~l 133 (290)
T TIGR00683 101 SAVTPFYYK-FSFPEIKHYYDT---IIAETGGLNMIV 133 (290)
T ss_pred EEeCCcCCC-CCHHHHHHHHHH---HHhhCCCCCEEE
Confidence 986543211 122333333333 34445 577764
No 294
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=35.04 E-value=1e+02 Score=33.95 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=47.2
Q ss_pred CCcEEEEecCCcccccCh--hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 519 NPLGVMIARGDLAVECGW--ERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~--e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
|.|+|.+|=-+++.--.. =...+ -++++..|+++||-+.++...+ |.....++..+.-|-....|+|+|.++
T Consensus 26 GADaVY~G~~~~~~R~~a~nfs~~~-l~e~i~~ah~~gkk~~V~~N~~--~~~~~~~~~~~~l~~l~e~GvDaviv~ 99 (347)
T COG0826 26 GADAVYIGEKEFGLRRRALNFSVED-LAEAVELAHSAGKKVYVAVNTL--LHNDELETLERYLDRLVELGVDAVIVA 99 (347)
T ss_pred CCCEEEeCCcccccccccccCCHHH-HHHHHHHHHHcCCeEEEEeccc--cccchhhHHHHHHHHHHHcCCCEEEEc
Confidence 579999984455544333 12222 5677899999999999887665 333334444444445555799999987
No 295
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=34.83 E-value=58 Score=28.81 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhcc-ccCcc
Q 006783 542 MQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASAR-RASCV 590 (631)
Q Consensus 542 ~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~-gaD~v 590 (631)
+...+...|+..++|++| .||+.|+.-++... ||-++
T Consensus 43 vv~~l~~lceek~Ip~v~------------V~s~~~LGkAcgi~V~aa~a 80 (84)
T PRK13600 43 LMTRVLSQINQKNIPVSF------------FKSKHALGKHVGINVNATIV 80 (84)
T ss_pred HHHHHHHHHHHcCCCEEE------------ECCHHHHHHHhCCCcCeEEE
Confidence 556999999999999998 88988877766663 54433
No 296
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=34.82 E-value=1.5e+02 Score=30.04 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=56.9
Q ss_pred hHHH-HHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccc
Q 006783 455 DLEF-VASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVE 533 (631)
Q Consensus 455 dl~f-~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve 533 (631)
.++. +-.++|+|.+-+ ++.+++.++-+.+++.| -..+|..+-+| .++.++.++.. +|.|+| ++++
T Consensus 72 ~i~~~~~~g~~~i~~H~-E~~~~~~~~i~~ik~~g-~k~GialnP~T--~~~~~~~~l~~------vD~Vlv----MsV~ 137 (201)
T PF00834_consen 72 YIEEFAEAGADYITFHA-EATEDPKETIKYIKEAG-IKAGIALNPET--PVEELEPYLDQ------VDMVLV----MSVE 137 (201)
T ss_dssp HHHHHHHHT-SEEEEEG-GGTTTHHHHHHHHHHTT-SEEEEEE-TTS---GGGGTTTGCC------SSEEEE----ESS-
T ss_pred HHHHHHhcCCCEEEEcc-cchhCHHHHHHHHHHhC-CCEEEEEECCC--CchHHHHHhhh------cCEEEE----EEec
Confidence 4444 434899998875 46678888888898887 56889988888 67888888753 599999 4667
Q ss_pred cCh------hhHHHHHHHHHHHHHhcCCCE
Q 006783 534 CGW------ERLADMQEEILSICGAAHVPV 557 (631)
Q Consensus 534 ig~------e~l~~~Qk~Ii~~c~aagkPv 557 (631)
-|+ +.+.+-.+++-....+.|..+
T Consensus 138 PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~ 167 (201)
T PF00834_consen 138 PGFGGQKFIPEVLEKIRELRKLIPENGLDF 167 (201)
T ss_dssp TTTSSB--HGGHHHHHHHHHHHHHHHTCGS
T ss_pred CCCCcccccHHHHHHHHHHHHHHHhcCCce
Confidence 666 233333334444445544433
No 297
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=34.69 E-value=4.3e+02 Score=28.95 Aligned_cols=94 Identities=11% Similarity=0.108 Sum_probs=52.9
Q ss_pred HhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCccc
Q 006783 454 MDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAV 532 (631)
Q Consensus 454 ~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~v 532 (631)
+.++.+++ ++.+|.++|- ++..+ +.|++.| +.++..+-|..-...+. .+ |+|+|++-=.+=|-
T Consensus 73 ~~l~vi~e~~v~~V~~~~G-~P~~~----~~lk~~G---i~v~~~v~s~~~A~~a~----~~----GaD~vVaqG~EAGG 136 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGG-RPDQA----RALEAIG---ISTYLHVPSPGLLKQFL----EN----GARKFIFEGRECGG 136 (320)
T ss_pred HHHHHHHhcCCcEEEEcCC-ChHHH----HHHHHCC---CEEEEEeCCHHHHHHHH----Hc----CCCEEEEecCcCcC
Confidence 46777777 6999999875 44444 3455444 78998888765443322 22 78999984222223
Q ss_pred ccCh-hhHHHHHHHHHHHHHh-------cCCCEEEEechh
Q 006783 533 ECGW-ERLADMQEEILSICGA-------AHVPVIWATQVL 564 (631)
Q Consensus 533 eig~-e~l~~~Qk~Ii~~c~a-------agkPvi~ATQvL 564 (631)
..|. .-+..++ +++..... ..+|||.|--|-
T Consensus 137 H~G~~~t~~L~~-~v~~~l~~~~~~~~~~~iPViAAGGI~ 175 (320)
T cd04743 137 HVGPRSSFVLWE-SAIDALLAANGPDKAGKIHLLFAGGIH 175 (320)
T ss_pred CCCCCCchhhHH-HHHHHHHHhhcccccCCccEEEEcCCC
Confidence 3331 1112222 33322221 269999887554
No 298
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.57 E-value=86 Score=29.95 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=28.9
Q ss_pred HHHHHh-cCCEEEEeccCC--hhHHHHHHHHHHHhCCCCceE
Q 006783 456 LEFVAS-HADMVGISFVRD--SCDIAMLRKELEKRKVQNLGV 494 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV~s--a~Dv~~lr~~L~~~~~~~~~I 494 (631)
++-+.+ ++|+|++|...+ ...+.++.+.|++.|..++.+
T Consensus 45 v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~v 86 (134)
T TIGR01501 45 IKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILL 86 (134)
T ss_pred HHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEE
Confidence 445555 699999999754 455899999999887655544
No 299
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=34.37 E-value=2.8e+02 Score=30.76 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhh--CCCCChhhHHhhhhc-cccCccccc
Q 006783 537 ERLADMQEEILSICGAAHVPVIWATQVLESLVK--FGVPTRAEITDVASA-RRASCVMLN 593 (631)
Q Consensus 537 e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~--~~~PtRAEvtDva~a-~gaD~vmLs 593 (631)
+.+..+-+.+-.+|+..++|||+.+|+=..-.+ ...|..+.+.+-... ..||.||+-
T Consensus 327 ~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l 386 (421)
T TIGR03600 327 EELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLI 386 (421)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEe
Confidence 567778888888999999999999998433222 335665444443333 689999875
No 300
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.34 E-value=1.5e+02 Score=31.96 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=45.2
Q ss_pred HhhcCCCCCCCCeEEEEecCCCCC-hH--H-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCC
Q 006783 159 ELLLGPLRHNQTNHIMVTVGQEAS-ES--E-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLA 234 (631)
Q Consensus 159 ~~l~G~~~~~R~TkImvTlgp~aa-~~--~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~ 234 (631)
-.|||.. .++..+-+|++.... ++ . ++++.+.|.+.+-|... + .+-++.||.+.+..| .+.+++|--
T Consensus 116 ~~LLGg~--~~~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~KiKv~---~---~~d~~~l~~vr~~~g-~~~l~lDaN 186 (354)
T cd03317 116 AQYLGGT--RDSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIK---P---GWDVEPLKAVRERFP-DIPLMADAN 186 (354)
T ss_pred HHHhCCC--CCeEEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEEEecC---h---HHHHHHHHHHHHHCC-CCeEEEECC
Confidence 3466762 356677777765433 22 2 88899999999999874 2 244566666666677 789999974
No 301
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=34.28 E-value=92 Score=35.54 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=37.5
Q ss_pred eEEEEecCCCCChHH-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHH
Q 006783 171 NHIMVTVGQEASESE-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKT 218 (631)
Q Consensus 171 TkImvTlgp~aa~~~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~ 218 (631)
.++=.-|++.-.+.+ ++.|+++|+++.-++++||....|.++++.+|.
T Consensus 217 l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 217 LRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred EEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 334344554323345 999999999999999999999999988888887
No 302
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=34.10 E-value=1.4e+02 Score=31.97 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=47.3
Q ss_pred CCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEE--------ecCCcccccChhhHHHHHHHHHHHHHhc
Q 006783 490 QNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMI--------ARGDLAVECGWERLADMQEEILSICGAA 553 (631)
Q Consensus 490 ~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImI--------aRGDL~veig~e~l~~~Qk~Ii~~c~aa 553 (631)
.++.||+-+-...|=+.+-+.++-+...-|.||+|| |=.|=.-++-++++.+..+++-......
T Consensus 213 THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~~~ 284 (286)
T COG2876 213 THLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALADAL 284 (286)
T ss_pred cCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhhhc
Confidence 467788888888787777777666655568999999 5556667777888888888876655543
No 303
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=33.99 E-value=4.8e+02 Score=27.78 Aligned_cols=111 Identities=18% Similarity=0.179 Sum_probs=71.0
Q ss_pred ceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechh---hhhh
Q 006783 492 LGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVL---ESLV 568 (631)
Q Consensus 492 ~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvL---ESM~ 568 (631)
+.|+.......-++.+.+-+. .|.+.||+---+| ++++.-+.-+++...|++.|++|-.....+ |.+.
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~-----~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~ 145 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIK-----AGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGV 145 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHH-----cCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccc
Confidence 678888876554444444433 2679999986666 678888889999999999999876433332 1110
Q ss_pred ---hCCCCChhhHHhhhhccccCcccccCCc----c---HHHHHHHHHHHHHH
Q 006783 569 ---KFGVPTRAEITDVASARRASCVMLNKGK----H---VVEAVSTLDKILHI 611 (631)
Q Consensus 569 ---~~~~PtRAEvtDva~a~gaD~vmLskG~----y---pveAV~~L~~Il~r 611 (631)
....-+..|+....+..|+|++-.+.|+ | |.--++.|..|.++
T Consensus 146 ~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~ 198 (282)
T TIGR01859 146 DEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKEL 198 (282)
T ss_pred cccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHH
Confidence 1123355565555555799998877544 3 33345666666554
No 304
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=33.74 E-value=1.1e+02 Score=32.59 Aligned_cols=62 Identities=19% Similarity=0.226 Sum_probs=40.1
Q ss_pred EEecCCCCChHHHHHHHHhCCCEEEeec-----------CCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCC
Q 006783 174 MVTVGQEASESEISDILKAGASIIRINC-----------AHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGP 236 (631)
Q Consensus 174 mvTlgp~aa~~~i~~Li~aGMdvaRINc-----------AHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GP 236 (631)
|.|+|=-...++-++|.++|.||.=+++ ..-+-++-.+.++.+.++..+.+..+-++.- .||
T Consensus 151 l~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~h-GGP 223 (268)
T PF09370_consen 151 LFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCH-GGP 223 (268)
T ss_dssp -EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEE-CTT
T ss_pred CeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEe-CCC
Confidence 5788654444449999999999998888 2345667788899999999888888877665 555
No 305
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.14 E-value=1.5e+02 Score=31.81 Aligned_cols=66 Identities=9% Similarity=0.055 Sum_probs=43.8
Q ss_pred hcHHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhh--hcchHHHHHHhhcCCCCcEEEEec
Q 006783 451 KDLMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSG--FERLPHILLEAMKSSNPLGVMIAR 527 (631)
Q Consensus 451 kD~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~a--v~NL~eIl~~a~~~~~~DGImIaR 527 (631)
...+.+..+++ ++|+|.+.- -++++++++.+.+++.. .++. ||=--| .+|+.+.... |+|+|-++.
T Consensus 204 ~tleea~eA~~~GaD~I~LDn-~~~e~l~~av~~~~~~~-~~i~----leAsGGIt~~ni~~ya~t-----GvD~Isvgs 272 (288)
T PRK07428 204 ETLEQVQEALEYGADIIMLDN-MPVDLMQQAVQLIRQQN-PRVK----IEASGNITLETIRAVAET-----GVDYISSSA 272 (288)
T ss_pred CCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHhcC-CCeE----EEEECCCCHHHHHHHHHc-----CCCEEEEch
Confidence 45566666776 799999984 47788888877776533 3433 443333 3566666543 789999864
No 306
>KOG1816 consensus Ubiquitin fusion-degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.90 E-value=96 Score=33.49 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=24.1
Q ss_pred hcccCCCCcEEEeCCeE--EEEEEEEeCCEEEEEEE
Q 006783 388 FDSVKPGEPIAFDDGKI--WGLIQGASISEIVVSIT 421 (631)
Q Consensus 388 ~~~v~~Gd~I~iDDGkI--~~~V~~v~~~~i~~~V~ 421 (631)
|..+..||.|.+.-+.- .+.|.++.+...++.|.
T Consensus 143 ~acLT~gDvi~i~Yn~k~y~i~V~e~kPa~aVsIiE 178 (308)
T KOG1816|consen 143 YACLTTGDVILINYNEKTYELKVVETKPANAVSIIE 178 (308)
T ss_pred ccccccCCEEEEecCCeEEEEEEEEecCCceeEEEE
Confidence 56788999999885544 45677777776666554
No 307
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=32.90 E-value=1.7e+02 Score=31.79 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=45.5
Q ss_pred hhcCCCCCCCCeEEEEecCCCCChH--H-HHHHHHhC-CCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCC
Q 006783 160 LLLGPLRHNQTNHIMVTVGQEASES--E-ISDILKAG-ASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAG 235 (631)
Q Consensus 160 ~l~G~~~~~R~TkImvTlgp~aa~~--~-i~~Li~aG-MdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~G 235 (631)
.|||.... .+..+-+|++.....+ . ++++++.| -+.+.|-+...+++. .++.||.+.+.+|..+.|++|--+
T Consensus 122 ~LLGg~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~~~~~~---d~~~v~avr~~~g~~~~l~iDaN~ 197 (365)
T cd03318 122 ELLGGRVR-DSLPVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGARPPAD---DLAHVEAIAKALGDRASVRVDVNQ 197 (365)
T ss_pred HHcCCCcC-CceEEEEEEeCCCHHHHHHHHHHHHhCCCceEEEEEeCCCChHH---HHHHHHHHHHHcCCCcEEEEECCC
Confidence 35664322 4566766765432121 2 77888999 999999886544444 444455554567777889999754
Q ss_pred C
Q 006783 236 P 236 (631)
Q Consensus 236 P 236 (631)
.
T Consensus 198 ~ 198 (365)
T cd03318 198 A 198 (365)
T ss_pred C
Confidence 3
No 308
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=32.72 E-value=1.3e+02 Score=31.62 Aligned_cols=136 Identities=21% Similarity=0.269 Sum_probs=86.6
Q ss_pred ceecCCceeecCCCcccCCCCChhcHHhHHHHH-h-cCCEEEEeccC-----ChhHHHHHHHHHHHhCCCCceEEEeecC
Q 006783 428 TKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVA-S-HADMVGISFVR-----DSCDIAMLRKELEKRKVQNLGVVLKIET 500 (631)
Q Consensus 428 g~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~-~-~~D~V~~SFV~-----sa~Dv~~lr~~L~~~~~~~~~IiaKIEt 500 (631)
..|+.-.|.+.|+ .-...+.+ + +||.|-+=-=. +-+||..+++.+.. =.-||-
T Consensus 13 AtLRnaR~~~~Pd------------~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~--------~lNlE~ 72 (239)
T PRK05265 13 ATLRNARGTNYPD------------PVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRETLKT--------ELNLEM 72 (239)
T ss_pred eeccccCCCCCCC------------HHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHhcCC--------CEEecc
Confidence 3566667777663 23334433 3 69999874221 34678888877642 112332
Q ss_pred hhhhcchHHHHHHhhcCCCCcEEEE---ecCCcccccChh--hHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCCh
Q 006783 501 KSGFERLPHILLEAMKSSNPLGVMI---ARGDLAVECGWE--RLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTR 575 (631)
Q Consensus 501 ~~av~NL~eIl~~a~~~~~~DGImI---aRGDL~veig~e--~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtR 575 (631)
.- -+|++.-+.+- .||-|-+ .|..+..|=|+. .-...-+.++..++++|+.|=.- --|+.
T Consensus 73 a~----~~em~~ia~~~-kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLF----------idP~~ 137 (239)
T PRK05265 73 AA----TEEMLDIALEV-KPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLF----------IDPDP 137 (239)
T ss_pred CC----CHHHHHHHHHC-CCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEE----------eCCCH
Confidence 21 23444444333 4788887 789999999985 34455567888889999988431 15665
Q ss_pred hhHHhhhhccccCcccccCCccHH
Q 006783 576 AEITDVASARRASCVMLNKGKHVV 599 (631)
Q Consensus 576 AEvtDva~a~gaD~vmLskG~ypv 599 (631)
.. -+.+...|||+|=|-+|+|--
T Consensus 138 ~q-i~~A~~~GAd~VELhTG~yA~ 160 (239)
T PRK05265 138 EQ-IEAAAEVGADRIELHTGPYAD 160 (239)
T ss_pred HH-HHHHHHhCcCEEEEechhhhc
Confidence 44 346666899999999999854
No 309
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=32.59 E-value=1.1e+02 Score=28.08 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=28.6
Q ss_pred HHHHHh-cCCEEEEecc--CChhHHHHHHHHHHHhCCCCceEEEe
Q 006783 456 LEFVAS-HADMVGISFV--RDSCDIAMLRKELEKRKVQNLGVVLK 497 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV--~sa~Dv~~lr~~L~~~~~~~~~IiaK 497 (631)
+..+.+ ++|+|++|+. .+.+.+.++.+.|++.+..++.+++=
T Consensus 43 ~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 43 VEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred HHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 345555 6999999997 45566667777777766546666554
No 310
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=32.54 E-value=1.9e+02 Score=31.38 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=68.5
Q ss_pred EEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhc----chHHHHHHhhcCCCCcEEEEecCCcccccChhhHHH
Q 006783 466 VGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFE----RLPHILLEAMKSSNPLGVMIARGDLAVECGWERLAD 541 (631)
Q Consensus 466 V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~----NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~ 541 (631)
.|-...++++-+.++-+.+.+... ++.|-+||=. |.+ |..+|.... ...|++.+.|= |--..+.+... .
T Consensus 112 ~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRl--G~d~~~~~~~~ia~~~-~~~g~~~ltVH-gRtr~~~y~~~--a 184 (323)
T COG0042 112 AGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRL--GWDDDDILALEIARIL-EDAGADALTVH-GRTRAQGYLGP--A 184 (323)
T ss_pred cchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEec--ccCcccccHHHHHHHH-HhcCCCEEEEe-cccHHhcCCCc--c
Confidence 345667888888888888877643 6889999843 332 223443332 12278899882 11111111111 2
Q ss_pred HHHHHHHHHHhcC-CCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 542 MQEEILSICGAAH-VPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 542 ~Qk~Ii~~c~aag-kPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
-.+.|-..-++.. +|||. +..+.|..+......-.|+|+||+.
T Consensus 185 d~~~I~~vk~~~~~ipvi~---------NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 185 DWDYIKELKEAVPSIPVIA---------NGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred CHHHHHHHHHhCCCCeEEe---------CCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 2334444445555 89996 5667888887777766799999997
No 311
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=32.51 E-value=6.1e+02 Score=26.63 Aligned_cols=151 Identities=13% Similarity=0.005 Sum_probs=80.7
Q ss_pred CCChhcHHhHHHHH-h-cCCEEEEecc---------CChhHHHHHHHHHHHhCCCCceEEEeecChhhh----cc-hHHH
Q 006783 447 GLTTKDLMDLEFVA-S-HADMVGISFV---------RDSCDIAMLRKELEKRKVQNLGVVLKIETKSGF----ER-LPHI 510 (631)
Q Consensus 447 ~LTekD~~dl~f~~-~-~~D~V~~SFV---------~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av----~N-L~eI 510 (631)
.+|.+++..+...+ + ++|.|-+.|- .+.++.+.++.+-+......+..++.-.+.-++ .| .++.
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~d 96 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELF 96 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHH
Confidence 35667777665444 3 7999977762 256666666655433221233333332221121 00 1222
Q ss_pred HHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---ccc
Q 006783 511 LLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRA 587 (631)
Q Consensus 511 l~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~ga 587 (631)
+..+. ..+.|.|-|. ++...+. .-++.+..+++.|+-|..+ .+|...+..+.+.+.+++.. .|+
T Consensus 97 i~~~~-~~g~~~iri~-------~~~~~~~-~~~~~i~~ak~~G~~v~~~----i~~~~~~~~~~~~~~~~~~~~~~~Ga 163 (275)
T cd07937 97 VEKAA-KNGIDIFRIF-------DALNDVR-NLEVAIKAVKKAGKHVEGA----ICYTGSPVHTLEYYVKLAKELEDMGA 163 (275)
T ss_pred HHHHH-HcCCCEEEEe-------ecCChHH-HHHHHHHHHHHCCCeEEEE----EEecCCCCCCHHHHHHHHHHHHHcCC
Confidence 22222 2256777763 2222333 3455678889999876641 13334466677777766555 699
Q ss_pred Cccccc--CCcc-HHHHHHHHHHHHH
Q 006783 588 SCVMLN--KGKH-VVEAVSTLDKILH 610 (631)
Q Consensus 588 D~vmLs--kG~y-pveAV~~L~~Il~ 610 (631)
|++.|. .|-. |.+.-+.+..+.+
T Consensus 164 ~~i~l~DT~G~~~P~~v~~lv~~l~~ 189 (275)
T cd07937 164 DSICIKDMAGLLTPYAAYELVKALKK 189 (275)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 999997 5654 5554444444443
No 312
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=32.25 E-value=3.5e+02 Score=28.17 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=45.4
Q ss_pred CCcEEEEecCCcc--cccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHh---hhhccccCccccc
Q 006783 519 NPLGVMIARGDLA--VECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITD---VASARRASCVMLN 593 (631)
Q Consensus 519 ~~DGImIaRGDL~--veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtD---va~a~gaD~vmLs 593 (631)
|++||++. |--| ..+..++-.++.+...+.|. -..|+++.+ +.++-.|.-. .|...|+|+||+.
T Consensus 34 Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv---------~~~~~~~~~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 34 GTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGT---------GSNNTAEAIELTKRAEKAGADAALVV 102 (284)
T ss_pred CCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEecc---------CCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 78999986 4322 22333444444444444332 246777533 2233334333 3333699999997
Q ss_pred ----CCccHHHHHHHHHHHHHH
Q 006783 594 ----KGKHVVEAVSTLDKILHI 611 (631)
Q Consensus 594 ----kG~ypveAV~~L~~Il~r 611 (631)
-.+-.-+.+++...|+..
T Consensus 103 ~P~~~~~~~~~l~~~~~~ia~~ 124 (284)
T cd00950 103 TPYYNKPSQEGLYAHFKAIAEA 124 (284)
T ss_pred ccccCCCCHHHHHHHHHHHHhc
Confidence 233356777888888775
No 313
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=32.12 E-value=83 Score=33.10 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=46.2
Q ss_pred HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeeeecc
Q 006783 186 ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRTGNL 243 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRtG~i 243 (631)
.++++++|.++.=||+.-...++|.+|..-|+...+.++ +.|.+|..-|++---.+
T Consensus 31 A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~--~plsIDT~~~~v~eaaL 86 (261)
T PRK07535 31 ALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVD--VPLCIDSPNPAAIEAGL 86 (261)
T ss_pred HHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCC--CCEEEeCCCHHHHHHHH
Confidence 788899999999999987667889999999999877665 55788998887655444
No 314
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.01 E-value=1.2e+02 Score=28.86 Aligned_cols=67 Identities=12% Similarity=0.013 Sum_probs=38.3
Q ss_pred HHHHh-cCCEEEEecc--CChhHHHHHHHHHHHhCCCCceEE--EeecChhhhcchHHHHHHhhcCCCCcEEEEe
Q 006783 457 EFVAS-HADMVGISFV--RDSCDIAMLRKELEKRKVQNLGVV--LKIETKSGFERLPHILLEAMKSSNPLGVMIA 526 (631)
Q Consensus 457 ~f~~~-~~D~V~~SFV--~sa~Dv~~lr~~L~~~~~~~~~Ii--aKIEt~~av~NL~eIl~~a~~~~~~DGImIa 526 (631)
+.+.+ ++|+|++|+. .+..++..+.+.|++.+..++.|+ -.|.+.+.-.. ++... ++..|.|.||-+
T Consensus 48 ~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~--~~~~~-l~~~G~~~vf~~ 119 (137)
T PRK02261 48 DAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFE--EVEKK-FKEMGFDRVFPP 119 (137)
T ss_pred HHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChH--HHHHH-HHHcCCCEEECc
Confidence 44455 6999999996 556677777788877765455433 34555322211 11111 223366777653
No 315
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=31.86 E-value=4.8e+02 Score=27.44 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=24.3
Q ss_pred HHHHhcCCCEEE-EechhhhhhhCCCCCh-hhHHhhhhccccCccccc
Q 006783 548 SICGAAHVPVIW-ATQVLESLVKFGVPTR-AEITDVASARRASCVMLN 593 (631)
Q Consensus 548 ~~c~aagkPvi~-ATQvLESM~~~~~PtR-AEvtDva~a~gaD~vmLs 593 (631)
..-+..|.||++ +|+-. +.... ..+.-+|.+.|||++|+-
T Consensus 188 ~lk~~~~~pV~~ds~Hs~------G~r~~~~~~~~aAva~Ga~gl~iE 229 (260)
T TIGR01361 188 VLKKETHLPIIVDPSHAA------GRRDLVIPLAKAAIAAGADGLMIE 229 (260)
T ss_pred HHHHhhCCCEEEcCCCCC------CccchHHHHHHHHHHcCCCEEEEE
Confidence 333456999999 88642 21111 223335667899999885
No 316
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=31.81 E-value=2.3e+02 Score=29.00 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=53.7
Q ss_pred cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHH
Q 006783 462 HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLAD 541 (631)
Q Consensus 462 ~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~ 541 (631)
++..|-+.| +++.-.+.+++.-++. .++. .=.=|.--.+..+..+.. |.+ .+|.++
T Consensus 33 Gi~~iEit~-~t~~a~~~i~~l~~~~--~~~~--vGAGTVl~~~~a~~a~~a-----GA~-FivsP~------------- 88 (204)
T TIGR01182 33 GLRVLEVTL-RTPVALDAIRLLRKEV--PDAL--IGAGTVLNPEQLRQAVDA-----GAQ-FIVSPG------------- 88 (204)
T ss_pred CCCEEEEeC-CCccHHHHHHHHHHHC--CCCE--EEEEeCCCHHHHHHHHHc-----CCC-EEECCC-------------
Confidence 588888887 6666666565544332 2322 222233333333333432 223 334443
Q ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 542 MQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 542 ~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
.-.+++..|+++++|++- |.-|..| +..| .|+|.|=|-
T Consensus 89 ~~~~v~~~~~~~~i~~iP-----------G~~TptE---i~~A~~~Ga~~vKlF 128 (204)
T TIGR01182 89 LTPELAKHAQDHGIPIIP-----------GVATPSE---IMLALELGITALKLF 128 (204)
T ss_pred CCHHHHHHHHHcCCcEEC-----------CCCCHHH---HHHHHHCCCCEEEEC
Confidence 235899999999999984 4455555 5555 688888774
No 317
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=31.74 E-value=6.3e+02 Score=28.00 Aligned_cols=65 Identities=22% Similarity=0.185 Sum_probs=34.9
Q ss_pred CCcEEEEe-cCCcccccC-hhhHHHHHHHHHHHHHhcCCCEEE-EechhhhhhhCCCCChhh---HHhhhhccccCcccc
Q 006783 519 NPLGVMIA-RGDLAVECG-WERLADMQEEILSICGAAHVPVIW-ATQVLESLVKFGVPTRAE---ITDVASARRASCVML 592 (631)
Q Consensus 519 ~~DGImIa-RGDL~veig-~e~l~~~Qk~Ii~~c~aagkPvi~-ATQvLESM~~~~~PtRAE---vtDva~a~gaD~vmL 592 (631)
|..-|++. ||=-..... ...+ =-..|..+-+..|.|||+ +|+- ...|.- +.=+|.+.|||++|+
T Consensus 252 Gn~~i~L~erg~s~yp~~~~~~l--dl~~i~~lk~~~~~PV~~d~~Hs--------~G~r~~~~~~a~aAva~GAdg~~i 321 (360)
T PRK12595 252 GNGQIILCERGIRTYEKATRNTL--DISAVPILKQETHLPVMVDVTHS--------TGRRDLLLPTAKAALAIGADGVMA 321 (360)
T ss_pred CCCCEEEECCccCCCCCCCCCCc--CHHHHHHHHHHhCCCEEEeCCCC--------CcchhhHHHHHHHHHHcCCCeEEE
Confidence 44557776 786654422 3222 111222222346999999 7753 222222 233566789999998
Q ss_pred c
Q 006783 593 N 593 (631)
Q Consensus 593 s 593 (631)
-
T Consensus 322 E 322 (360)
T PRK12595 322 E 322 (360)
T ss_pred E
Confidence 5
No 318
>PRK07695 transcriptional regulator TenI; Provisional
Probab=31.68 E-value=1.7e+02 Score=28.94 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=26.9
Q ss_pred HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHH
Q 006783 186 ISDILKAGASIIRINCAHGNPSIWSEIIRRVKT 218 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~ 218 (631)
+.+++++|++..-+..-|.+.+...+.+..+++
T Consensus 20 ~~~~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~ 52 (201)
T PRK07695 20 VAMQIHSEVDYIHIREREKSAKELYEGVESLLK 52 (201)
T ss_pred HHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445889999999999888888888888877773
No 319
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=31.67 E-value=5.5e+02 Score=25.88 Aligned_cols=144 Identities=14% Similarity=0.062 Sum_probs=79.2
Q ss_pred hHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEe---------------ecC---hhhhcchHHHHHHhh
Q 006783 455 DLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLK---------------IET---KSGFERLPHILLEAM 515 (631)
Q Consensus 455 dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaK---------------IEt---~~av~NL~eIl~~a~ 515 (631)
.++.+.+ +.|.|-+-+- ...++.++++.+++.|. .|.+- +.+ .+.++++.+.+..+
T Consensus 19 ~~~~~~e~G~~~vEl~~~-~~~~~~~l~~~l~~~gl---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a- 93 (254)
T TIGR03234 19 RFAAAAQAGFTGVEYLFP-YDWDAEALKARLAAAGL---EQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYA- 93 (254)
T ss_pred HHHHHHHcCCCEEEecCC-ccCCHHHHHHHHHHcCC---eEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHH-
Confidence 3556666 7888888553 24568888998988773 33321 000 12245555544433
Q ss_pred cCCCCcEEEEecCCc----ccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhh--hhhCCCCChhhHHhhhhccccCc
Q 006783 516 KSSNPLGVMIARGDL----AVECGWERLADMQEEILSICGAAHVPVIWATQVLES--LVKFGVPTRAEITDVASARRASC 589 (631)
Q Consensus 516 ~~~~~DGImIaRGDL----~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLES--M~~~~~PtRAEvtDva~a~gaD~ 589 (631)
+.-|+..|.+..|-. ..+-.++.+....+++...|++.|+.+.+=+ +.. +-.+...|-.++-++....+.+.
T Consensus 94 ~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~--~~~~~~~~~~l~t~~~~~~li~~v~~~~ 171 (254)
T TIGR03234 94 RALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP--INSFDMPGFFLTTTEQALAVIDDVGREN 171 (254)
T ss_pred HHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE--CCcccCCCChhcCHHHHHHHHHHhCCCC
Confidence 122556666654422 1222234555666777788888887766522 111 11234577777777777666555
Q ss_pred cccc--------CCccHHHHHHHH
Q 006783 590 VMLN--------KGKHVVEAVSTL 605 (631)
Q Consensus 590 vmLs--------kG~ypveAV~~L 605 (631)
+-+. .|.-|.++++.+
T Consensus 172 ~~i~~D~~h~~~~~e~~~~~i~~~ 195 (254)
T TIGR03234 172 LKLQYDLYHMQRMGGDLARTLAAY 195 (254)
T ss_pred EeEeeehhhhhhhCCCHHHHHHHh
Confidence 5443 455566655543
No 320
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=31.63 E-value=2.3e+02 Score=29.93 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhc
Q 006783 474 SCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAA 553 (631)
Q Consensus 474 a~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aa 553 (631)
.+.++.++++.++.| +.+++-+-....++-+.+.+ |.+-|+-+++. +..++..+-+.
T Consensus 77 ~~gl~~l~~~~~~~G---l~~~te~~d~~~~~~l~~~v---------d~~kIga~~~~-----------n~~LL~~~a~~ 133 (266)
T PRK13398 77 EEGLKILKEVGDKYN---LPVVTEVMDTRDVEEVADYA---------DMLQIGSRNMQ-----------NFELLKEVGKT 133 (266)
T ss_pred HHHHHHHHHHHHHcC---CCEEEeeCChhhHHHHHHhC---------CEEEECccccc-----------CHHHHHHHhcC
Confidence 456777888877765 77888888888877666542 78888866543 24567777788
Q ss_pred CCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccccc------CCccHHHHHHH
Q 006783 554 HVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN------KGKHVVEAVST 604 (631)
Q Consensus 554 gkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs------kG~ypveAV~~ 604 (631)
||||++.|-+ ..|-.|+-+++.. .|-.-++|- .-.||-+.|..
T Consensus 134 gkPV~lk~G~--------~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl 185 (266)
T PRK13398 134 KKPILLKRGM--------SATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDL 185 (266)
T ss_pred CCcEEEeCCC--------CCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHH
Confidence 9999985422 2366676665544 365444443 23688554443
No 321
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=31.55 E-value=3.9e+02 Score=29.70 Aligned_cols=107 Identities=18% Similarity=0.085 Sum_probs=62.5
Q ss_pred eccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCccc---------ccChhhH
Q 006783 469 SFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAV---------ECGWERL 539 (631)
Q Consensus 469 SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~v---------eig~e~l 539 (631)
+...+++|+.++-+.|++... ...|+.|+=..-..+.+..++... ++|+|.|.=++=+. +.|.+.+
T Consensus 193 ~~~~~~~~l~~~I~~lr~~~~-~~pV~vK~~~~~~~~~~a~~~~~~----g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~ 267 (392)
T cd02808 193 HDIYSIEDLAQLIEDLREATG-GKPIGVKLVAGHGEGDIAAGVAAA----GADFITIDGAEGGTGAAPLTFIDHVGLPTE 267 (392)
T ss_pred CCCCCHHHHHHHHHHHHHhCC-CceEEEEECCCCCHHHHHHHHHHc----CCCEEEEeCCCCCCCCCcccccccCCccHH
Confidence 346788888888888887652 277888986432333444444433 58999995433221 2233222
Q ss_pred HHHHHHHHHHHHhc----CCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 540 ADMQEEILSICGAA----HVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 540 ~~~Qk~Ii~~c~aa----gkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
....++...+.+. .+|||.+. ++=|- .|++.+ .|||+|.+.
T Consensus 268 -~~L~~v~~~~~~~~~~~~i~viasG---------GI~~g---~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 268 -LGLARAHQALVKNGLRDRVSLIASG---------GLRTG---ADVAKALALGADAVGIG 314 (392)
T ss_pred -HHHHHHHHHHHHcCCCCCCeEEEEC---------CCCCH---HHHHHHHHcCCCeeeec
Confidence 2333444444443 57888755 33333 356655 699999875
No 322
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=31.51 E-value=2.1e+02 Score=30.06 Aligned_cols=88 Identities=7% Similarity=-0.014 Sum_probs=58.0
Q ss_pred HHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEE
Q 006783 479 MLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVI 558 (631)
Q Consensus 479 ~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi 558 (631)
.+++.|.... .-.+.+..+-++... ||+..+ |.|.|+|. .|-|.-.+..++ .++..|+.+|.+++
T Consensus 9 ~lk~~l~~g~-~~~g~~~~~~sp~~~----e~~a~~----G~D~v~iD-----~EHg~~~~~~~~-~~i~a~~~~g~~~l 73 (256)
T PRK10558 9 KFKAALAAKQ-VQIGCWSALANPITT----EVLGLA----GFDWLVLD-----GEHAPNDVSTFI-PQLMALKGSASAPV 73 (256)
T ss_pred HHHHHHHcCC-ceEEEEEcCCCcHHH----HHHHhc----CCCEEEEc-----cccCCCCHHHHH-HHHHHHhhcCCCcE
Confidence 3666666422 335666766666544 566655 78999995 465655566554 57788999999998
Q ss_pred EEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 559 WATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 559 ~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
+ .-|.+++.. +-.+ .|+++||+-
T Consensus 74 V---------Rvp~~~~~~---i~r~LD~Ga~giivP 98 (256)
T PRK10558 74 V---------RVPTNEPVI---IKRLLDIGFYNFLIP 98 (256)
T ss_pred E---------ECCCCCHHH---HHHHhCCCCCeeeec
Confidence 7 334555544 4444 499999985
No 323
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=31.28 E-value=2.7e+02 Score=30.99 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=43.5
Q ss_pred EEEeecC-hhhhcchHHHHHHhhcCCCCcEEEEe-c--CCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhh
Q 006783 494 VVLKIET-KSGFERLPHILLEAMKSSNPLGVMIA-R--GDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVK 569 (631)
Q Consensus 494 IiaKIEt-~~av~NL~eIl~~a~~~~~~DGImIa-R--GDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~ 569 (631)
+.+||-. +.....+-+++..+ |+|.|.|- | ...-+. |... ...|.+.+++.++|||. .
T Consensus 133 VtvkiRl~~~~~~e~a~~l~eA----Gad~I~ihgrt~~q~~~s-g~~~----p~~l~~~i~~~~IPVI~-G-------- 194 (369)
T TIGR01304 133 VITAVRVSPQNAREIAPIVVKA----GADLLVIQGTLVSAEHVS-TSGE----PLNLKEFIGELDVPVIA-G-------- 194 (369)
T ss_pred eEEEEecCCcCHHHHHHHHHHC----CCCEEEEeccchhhhccC-CCCC----HHHHHHHHHHCCCCEEE-e--------
Confidence 6666654 22222333334444 78999984 1 000000 1000 23567777888999985 2
Q ss_pred CCCCChhhHHhhhhccccCccccc
Q 006783 570 FGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 570 ~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
...|..++..+.. .|+|+||..
T Consensus 195 -~V~t~e~A~~~~~-aGaDgV~~G 216 (369)
T TIGR01304 195 -GVNDYTTALHLMR-TGAAGVIVG 216 (369)
T ss_pred -CCCCHHHHHHHHH-cCCCEEEEC
Confidence 3556555444443 699999954
No 324
>PRK01712 carbon storage regulator; Provisional
Probab=31.06 E-value=1.1e+02 Score=25.90 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=25.0
Q ss_pred cCCCCcEEEeCCeEEEEEEEEeCCEEEEEEE
Q 006783 391 VKPGEPIAFDDGKIWGLIQGASISEIVVSIT 421 (631)
Q Consensus 391 v~~Gd~I~iDDGkI~~~V~~v~~~~i~~~V~ 421 (631)
-++|+.|.|+| .|...|.++.++.+..-|.
T Consensus 6 Rk~gE~I~Igd-~I~I~V~~i~~~~VrlGI~ 35 (64)
T PRK01712 6 RKVGESLMIGD-DIEVTVLGVKGNQVRIGIN 35 (64)
T ss_pred ccCCCEEEeCC-CEEEEEEEEeCCEEEEEEE
Confidence 37899999998 6999999999888776554
No 325
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=31.01 E-value=4.7e+02 Score=28.33 Aligned_cols=109 Identities=19% Similarity=0.156 Sum_probs=65.0
Q ss_pred eccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHH
Q 006783 469 SFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILS 548 (631)
Q Consensus 469 SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~ 548 (631)
.=.+++++|+++++.. ++.||+|+---- +...+. +.++ |+|-| | ..|..-+ -.+++.
T Consensus 51 ~R~~~p~~I~~I~~~V------~iPVig~~kigh-~~Ea~~-L~~~----GvDiI-----D-eTe~lrP-----ade~~~ 107 (287)
T TIGR00343 51 ARMSDPKMIKEIMDAV------SIPVMAKVRIGH-FVEAQI-LEAL----GVDYI-----D-ESEVLTP-----ADWTFH 107 (287)
T ss_pred eecCCHHHHHHHHHhC------CCCEEEEeeccH-HHHHHH-HHHc----CCCEE-----E-ccCCCCc-----HHHHHH
Confidence 4456777777777654 588988775322 333333 3333 67877 4 3332222 134444
Q ss_pred HHHh-cCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHhhc
Q 006783 549 ICGA-AHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINTAQ 615 (631)
Q Consensus 549 ~c~a-agkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e~~ 615 (631)
..+. .+.|++. +.-|..| +-.+ .|+|+|--. +| +.+|||+-|+.+-......
T Consensus 108 ~~K~~f~vpfma-----------d~~~l~E---Alrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 108 IDKKKFKVPFVC-----------GARDLGE---ALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred HHHHHcCCCEEc-----------cCCCHHH---HHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHHH
Confidence 4444 4888875 3444444 4444 588877655 45 7999999999998876543
No 326
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=30.84 E-value=1.6e+02 Score=28.79 Aligned_cols=31 Identities=13% Similarity=0.002 Sum_probs=15.5
Q ss_pred CcccccChhhHHHHHHHHHHHHHhcCCCEEE
Q 006783 529 DLAVECGWERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 529 DL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
|+.--.+.++...-.+.|+..+++++..+++
T Consensus 83 D~~~~~~~~~~~~~l~~li~~~~~~~~~~il 113 (191)
T PRK10528 83 DGLRGFPPQQTEQTLRQIIQDVKAANAQPLL 113 (191)
T ss_pred cCccCCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 5444444455555555555555555444443
No 327
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=30.72 E-value=5.4e+02 Score=27.21 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=48.0
Q ss_pred HHHHHh-cCCEEEEe------ccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecC
Q 006783 456 LEFVAS-HADMVGIS------FVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARG 528 (631)
Q Consensus 456 l~f~~~-~~D~V~~S------FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRG 528 (631)
+++.++ ++|.|.+. +--|.++-.++-+...+....++.||+-+-. ..+.--+.+..+ ...|.|++|+.+-
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a-~~~Gadav~~~pP 108 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLA-EKAGADGYLLLPP 108 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHH-HHhCCCEEEECCC
Confidence 455555 57777662 3445555555444333332245667777632 233222333333 2336788888655
Q ss_pred CcccccChhhHHHHHHHHHHHHHhcCCCEEEE
Q 006783 529 DLAVECGWERLADMQEEILSICGAAHVPVIWA 560 (631)
Q Consensus 529 DL~veig~e~l~~~Qk~Ii~~c~aagkPvi~A 560 (631)
-..- ..-+.+...-+.| |.+...|+++-
T Consensus 109 ~y~~-~s~~~i~~~f~~v---~~a~~~pvilY 136 (296)
T TIGR03249 109 YLIN-GEQEGLYAHVEAV---CESTDLGVIVY 136 (296)
T ss_pred CCCC-CCHHHHHHHHHHH---HhccCCCEEEE
Confidence 4321 1223333333333 44556777643
No 328
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=30.60 E-value=4.5e+02 Score=28.89 Aligned_cols=96 Identities=27% Similarity=0.261 Sum_probs=54.8
Q ss_pred CChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccC-hhhHHHHHHHHHHHH
Q 006783 472 RDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECG-WERLADMQEEILSIC 550 (631)
Q Consensus 472 ~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig-~e~l~~~Qk~Ii~~c 550 (631)
-+.+++..+++.. +..||.| ++.+.+++.... ..|+|+|.|. |--|..+. ...-..+..++....
T Consensus 200 ~~~~~i~~l~~~~------~~PvivK-----gv~~~~dA~~a~--~~G~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~ 265 (344)
T cd02922 200 LTWDDIKWLRKHT------KLPIVLK-----GVQTVEDAVLAA--EYGVDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHC 265 (344)
T ss_pred CCHHHHHHHHHhc------CCcEEEE-----cCCCHHHHHHHH--HcCCCEEEEE-CCCcccCCCCCCHHHHHHHHHHHH
Confidence 4667777776643 4678888 444555544332 3489999985 22233321 112223344444444
Q ss_pred Hhc--CCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 551 GAA--HVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 551 ~aa--gkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
.+. .+|||.+. |+=+ =.|++.+ .|||+|++.
T Consensus 266 ~~~~~~~~vi~~G---------GIr~---G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 266 PEVFDKIEVYVDG---------GVRR---GTDVLKALCLGAKAVGLG 300 (344)
T ss_pred HHhCCCceEEEeC---------CCCC---HHHHHHHHHcCCCEEEEC
Confidence 343 47888754 3333 3577666 699999997
No 329
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=30.54 E-value=43 Score=32.35 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCCEEEEech
Q 006783 544 EEILSICGAAHVPVIWATQV 563 (631)
Q Consensus 544 k~Ii~~c~aagkPvi~ATQv 563 (631)
.+|+....+.|+|||+||-|
T Consensus 66 ~evi~~I~~~G~PviVAtDV 85 (138)
T PF04312_consen 66 SEVIEWISEYGKPVIVATDV 85 (138)
T ss_pred HHHHHHHHHcCCEEEEEecC
Confidence 46677778999999999974
No 330
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=30.51 E-value=2e+02 Score=28.20 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=30.2
Q ss_pred HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcC
Q 006783 186 ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLE 224 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g 224 (631)
++.++++|++.+-+..-..+...+.+.++.++...+..|
T Consensus 27 ~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~ 65 (212)
T PRK00043 27 VEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYG 65 (212)
T ss_pred HHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 888999999999888887777777777777776555444
No 331
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=30.47 E-value=5.4e+02 Score=27.35 Aligned_cols=96 Identities=19% Similarity=0.218 Sum_probs=44.7
Q ss_pred HHHHHh-cCCEEEEe------ccCChhHHHHHHH-HHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEec
Q 006783 456 LEFVAS-HADMVGIS------FVRDSCDIAMLRK-ELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIAR 527 (631)
Q Consensus 456 l~f~~~-~~D~V~~S------FV~sa~Dv~~lr~-~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaR 527 (631)
++|.++ ++|.|.+. +.-|.++=.++-+ ..+..+ .++.||+-+- . ..+.--+.+..+ ...|.|+||+.+
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv~-~-~t~~~i~~~~~a-~~~Gadav~~~p 109 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA-GRVPVIAGAG-G-GTAQAIEYAQAA-ERAGADGILLLP 109 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCcEEEecC-C-CHHHHHHHHHHH-HHhCCCEEEECC
Confidence 455555 57777652 2234444333333 333332 4566777662 1 222222222222 223678888876
Q ss_pred CCcccccChhhHHHHHHHHHHHHHhcCCCEEE
Q 006783 528 GDLAVECGWERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 528 GDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
-... -..-+.+...- -..|++.+.|+++
T Consensus 110 P~y~-~~~~~~i~~~f---~~va~~~~lpi~l 137 (303)
T PRK03620 110 PYLT-EAPQEGLAAHV---EAVCKSTDLGVIV 137 (303)
T ss_pred CCCC-CCCHHHHHHHH---HHHHHhCCCCEEE
Confidence 6443 12223333333 3345556777764
No 332
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=30.47 E-value=2.3e+02 Score=26.06 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=57.4
Q ss_pred hhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhh
Q 006783 502 SGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDV 581 (631)
Q Consensus 502 ~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDv 581 (631)
.|.+++..+...-++ +.||+++- .|+.-.-.++.+....+++.......+.|++++-.-.+- ..+...+..+....
T Consensus 57 ~G~~~~~~~~~~~~~--~~d~~ilv-~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~ 132 (164)
T cd04175 57 AGTEQFTAMRDLYMK--NGQGFVLV-YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-EDERVVGKEQGQNL 132 (164)
T ss_pred CCcccchhHHHHHHh--hCCEEEEE-EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc-hhccEEcHHHHHHH
Confidence 344455554444333 34777664 355544456667666777776655667888775544331 11222333444444
Q ss_pred hhccccCccccc--CCccHHHHHHHHHHHH
Q 006783 582 ASARRASCVMLN--KGKHVVEAVSTLDKIL 609 (631)
Q Consensus 582 a~a~gaD~vmLs--kG~ypveAV~~L~~Il 609 (631)
+...+...+..| .|.-.-+..+++.+-+
T Consensus 133 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 133 ARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 444566666666 6777777766665443
No 333
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=30.46 E-value=87 Score=32.48 Aligned_cols=50 Identities=18% Similarity=0.447 Sum_probs=32.2
Q ss_pred CCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc-cccCcccc
Q 006783 519 NPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA-RRASCVML 592 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a-~gaD~vmL 592 (631)
|.|+|||| |=.++. .+++ .+++..++++.+||+. .| ++.... -+||++++
T Consensus 27 gtdai~vG-GS~~vt--~~~~----~~~v~~ik~~~lPvil------------fp-----~~~~~i~~~aDa~l~ 77 (223)
T TIGR01768 27 GTDAILIG-GSQGVT--YEKT----DTLIEALRRYGLPIIL------------FP-----SNPTNVSRDADALFF 77 (223)
T ss_pred CCCEEEEc-CCCccc--HHHH----HHHHHHHhccCCCEEE------------eC-----CCccccCcCCCEEEE
Confidence 68999998 444332 2333 4455666778899997 34 334444 47998876
No 334
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=30.29 E-value=4.3e+02 Score=28.08 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=39.6
Q ss_pred CCcEEEEecCCcccccC---hhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCcccc
Q 006783 519 NPLGVMIARGDLAVECG---WERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVML 592 (631)
Q Consensus 519 ~~DGImIaRGDL~veig---~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmL 592 (631)
|+|||++. |= +-|.. .++=..+.+.....+ .-.+|||+.+ +. +-.|..+.+.. .|+|++|+
T Consensus 41 Gv~Gi~~~-Gs-tGE~~~Lt~eEr~~~~~~~~~~~-~~~~pvi~gv---------~~-~t~~~i~~~~~a~~~Gadav~~ 107 (303)
T PRK03620 41 GAAALFAA-GG-TGEFFSLTPDEYSQVVRAAVETT-AGRVPVIAGA---------GG-GTAQAIEYAQAAERAGADGILL 107 (303)
T ss_pred CCCEEEEC-cC-CcCcccCCHHHHHHHHHHHHHHh-CCCCcEEEec---------CC-CHHHHHHHHHHHHHhCCCEEEE
Confidence 78999884 21 22222 222222222332322 2247888643 22 33344444433 69999998
Q ss_pred cCCcc----HHHHHHHHHHHHHH
Q 006783 593 NKGKH----VVEAVSTLDKILHI 611 (631)
Q Consensus 593 skG~y----pveAV~~L~~Il~r 611 (631)
.--.| .-+.++....|+..
T Consensus 108 ~pP~y~~~~~~~i~~~f~~va~~ 130 (303)
T PRK03620 108 LPPYLTEAPQEGLAAHVEAVCKS 130 (303)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh
Confidence 73222 34555666666554
No 335
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=30.03 E-value=1.8e+02 Score=30.54 Aligned_cols=136 Identities=21% Similarity=0.279 Sum_probs=88.3
Q ss_pred ceecCCceeecCCCcccCCCCChhcHHhHHHHH-h-cCCEEEEeccC-----ChhHHHHHHHHHHHhCCCCceEEEeecC
Q 006783 428 TKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVA-S-HADMVGISFVR-----DSCDIAMLRKELEKRKVQNLGVVLKIET 500 (631)
Q Consensus 428 g~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~-~-~~D~V~~SFV~-----sa~Dv~~lr~~L~~~~~~~~~IiaKIEt 500 (631)
..|+..+|.+.|+ .-...+.+ + ++|.|-+=-=. +-+||..+++.+.. =.-||-
T Consensus 10 AtLRnaR~~~~Pd------------pv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~--------~lNlE~ 69 (234)
T cd00003 10 ATLRNARGTNYPD------------PVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRT--------ELNLEM 69 (234)
T ss_pred hhhhhcCCCCCCC------------HHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCC--------CEEecc
Confidence 3566777777663 33344434 3 69988874221 34688888877641 112332
Q ss_pred hhhhcchHHHHHHhhcCCCCcEEEE---ecCCcccccChh--hHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCCh
Q 006783 501 KSGFERLPHILLEAMKSSNPLGVMI---ARGDLAVECGWE--RLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTR 575 (631)
Q Consensus 501 ~~av~NL~eIl~~a~~~~~~DGImI---aRGDL~veig~e--~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtR 575 (631)
.- -+|++..+.+- .||-|-+ .|..+..|=|+. .-...-+.++..++++|+.|-+- --|..
T Consensus 70 a~----t~em~~ia~~~-kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLF----------iDPd~ 134 (234)
T cd00003 70 AP----TEEMLEIALEV-KPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLF----------IDPDP 134 (234)
T ss_pred CC----CHHHHHHHHHC-CCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEE----------eCCCH
Confidence 21 34555555443 3788888 789999999985 34455678889999999998542 15664
Q ss_pred hhHHhhhhccccCcccccCCccHH
Q 006783 576 AEITDVASARRASCVMLNKGKHVV 599 (631)
Q Consensus 576 AEvtDva~a~gaD~vmLskG~ypv 599 (631)
.. -+.+...|||+|=|-+|+|--
T Consensus 135 ~q-i~~A~~~GAd~VELhTG~Ya~ 157 (234)
T cd00003 135 EQ-IEAAKEVGADRVELHTGPYAN 157 (234)
T ss_pred HH-HHHHHHhCcCEEEEechhhhc
Confidence 33 346666899999999999953
No 336
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=29.89 E-value=5.8e+02 Score=25.52 Aligned_cols=116 Identities=12% Similarity=0.070 Sum_probs=63.3
Q ss_pred ChhcHHhHHHHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeec----C----hhh-hcchHHHHHHhhcCCC
Q 006783 449 TTKDLMDLEFVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIE----T----KSG-FERLPHILLEAMKSSN 519 (631)
Q Consensus 449 TekD~~dl~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIE----t----~~a-v~NL~eIl~~a~~~~~ 519 (631)
+..|...+.-++..+...+++. .+.++++.+++.. ++.++.+.- + ..+ .+.+++... + |
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~-~~~~~i~~i~~~~------~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~-a----G 88 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRA-NGVEDIKAIRAVV------DVPIIGIIKRDYPDSEVYITPTLKEVDALAA-A----G 88 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEc-CCHHHHHHHHHhC------CCCEEEEEecCCCCCCceECCCHHHHHHHHH-c----C
Confidence 4466677777666566677774 5678887777642 244442211 0 001 123333332 2 6
Q ss_pred CcEEEEecCCcccccChhhHHHHHHHHHHHHHh-cCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 520 PLGVMIARGDLAVECGWERLADMQEEILSICGA-AHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 520 ~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~a-agkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
.|.|.+.-..+-..-+ +-.++++..|++ .+.|++.- ..|..|+ ..+...|+|.+..+
T Consensus 89 ad~I~~d~~~~~~p~~-----~~~~~~i~~~~~~~~i~vi~~-----------v~t~ee~-~~a~~~G~d~i~~~ 146 (221)
T PRK01130 89 ADIIALDATLRPRPDG-----ETLAELVKRIKEYPGQLLMAD-----------CSTLEEG-LAAQKLGFDFIGTT 146 (221)
T ss_pred CCEEEEeCCCCCCCCC-----CCHHHHHHHHHhCCCCeEEEe-----------CCCHHHH-HHHHHcCCCEEEcC
Confidence 7977764222210000 233577888888 89998863 2344444 24444699988774
No 337
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=29.86 E-value=1.2e+02 Score=31.23 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCC
Q 006783 477 IAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVP 556 (631)
Q Consensus 477 v~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkP 556 (631)
++.+++.|.+.+ .++.|.+.-+... -+|+++++.. +.|-|+.+=.++ .....+...|++.++|
T Consensus 67 ae~~~~~l~~in-P~~~V~~~~~~i~-~~~~~~l~~~-----~~D~VvdaiD~~----------~~k~~L~~~c~~~~ip 129 (231)
T cd00755 67 VEVMAERIRDIN-PECEVDAVEEFLT-PDNSEDLLGG-----DPDFVVDAIDSI----------RAKVALIAYCRKRKIP 129 (231)
T ss_pred HHHHHHHHHHHC-CCcEEEEeeeecC-HhHHHHHhcC-----CCCEEEEcCCCH----------HHHHHHHHHHHHhCCC
Confidence 455666777665 3444333222211 1577777632 258777763322 3456688999999999
Q ss_pred EEEEechhhhhhhCCCCChhhHHhhhhc
Q 006783 557 VIWATQVLESLVKFGVPTRAEITDVASA 584 (631)
Q Consensus 557 vi~ATQvLESM~~~~~PtRAEvtDva~a 584 (631)
+|.+. +......||+=++.|++..
T Consensus 130 ~I~s~----g~g~~~dp~~i~i~di~~t 153 (231)
T cd00755 130 VISSM----GAGGKLDPTRIRVADISKT 153 (231)
T ss_pred EEEEe----CCcCCCCCCeEEEccEecc
Confidence 99863 3445678999999998665
No 338
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=29.84 E-value=5.8e+02 Score=26.71 Aligned_cols=97 Identities=12% Similarity=0.075 Sum_probs=51.6
Q ss_pred hHHHHHh-cCCEEEEe------ccCChhHHHHHHHHHHHhCCCCceEEEeec---ChhhhcchHHHHHHhhcCCCCcEEE
Q 006783 455 DLEFVAS-HADMVGIS------FVRDSCDIAMLRKELEKRKVQNLGVVLKIE---TKSGFERLPHILLEAMKSSNPLGVM 524 (631)
Q Consensus 455 dl~f~~~-~~D~V~~S------FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIE---t~~av~NL~eIl~~a~~~~~~DGIm 524 (631)
.++|.++ ++|.|.+. +.-|.++=.++-+...+.-..++.||+-+= |.++++..... . ..|+|+||
T Consensus 27 ~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a-~----~~G~d~v~ 101 (292)
T PRK03170 27 LVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFA-E----KAGADGAL 101 (292)
T ss_pred HHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHH-H----HcCCCEEE
Confidence 4566665 68888752 122334444443333333224577888774 34444433332 2 23789999
Q ss_pred EecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEE
Q 006783 525 IARGDLAVECGWERLADMQEEILSICGAAHVPVIWA 560 (631)
Q Consensus 525 IaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~A 560 (631)
+.+-.... .+-+.+...-+.| |.+.+.|+++-
T Consensus 102 ~~pP~~~~-~~~~~i~~~~~~i---a~~~~~pv~lY 133 (292)
T PRK03170 102 VVTPYYNK-PTQEGLYQHFKAI---AEATDLPIILY 133 (292)
T ss_pred ECCCcCCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 97665432 2334444444444 55567888854
No 339
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=29.79 E-value=1.8e+02 Score=28.25 Aligned_cols=44 Identities=11% Similarity=0.276 Sum_probs=38.6
Q ss_pred HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEE
Q 006783 186 ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQI 229 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~I 229 (631)
+++++++|++++-+.+-+.+.....+++..++...+..|.++-|
T Consensus 19 ~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i 62 (196)
T TIGR00693 19 VEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIV 62 (196)
T ss_pred HHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 99999999999999998888888999999999988887766555
No 340
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=29.75 E-value=7.5e+02 Score=26.81 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=19.7
Q ss_pred cCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 553 AHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 553 agkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
.++|||... ++-+... ++.+ .|||+|++.
T Consensus 253 ~~ipVIasG---------GI~~~~d---i~kaLalGAd~V~ig 283 (333)
T TIGR02151 253 PDAPIIASG---------GLRTGLD---VAKAIALGADAVGMA 283 (333)
T ss_pred CCCeEEEEC---------CCCCHHH---HHHHHHhCCCeehhh
Confidence 468888644 5556544 4444 699999996
No 341
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=29.75 E-value=21 Score=31.16 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=3.6
Q ss_pred hhhhcccCCCCcEEEeCCeEEEEEEEEeCCEEEEEEE
Q 006783 385 SCLFDSVKPGEPIAFDDGKIWGLIQGASISEIVVSIT 421 (631)
Q Consensus 385 p~l~~~v~~Gd~I~iDDGkI~~~V~~v~~~~i~~~V~ 421 (631)
.++.+++++||.|..-.|-+ ++|.+++++.+.+++.
T Consensus 31 ~~m~~~Lk~Gd~VvT~gGi~-G~V~~i~~~~v~lei~ 66 (82)
T PF02699_consen 31 QEMLASLKPGDEVVTIGGIY-GTVVEIDDDTVVLEIA 66 (82)
T ss_dssp TTGGG--------------------------------
T ss_pred HHHHHcCCCCCEEEECCcEE-EEEEEEeCCEEEEEEC
Confidence 36789999999999987755 5677788888888764
No 342
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=29.73 E-value=7.5e+02 Score=26.80 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=59.2
Q ss_pred CCcEEEEecCCcccc----cChhhH----HHHHHHHHHHHHhc-CCCEEE-----EechhhhhhhCCC---------CCh
Q 006783 519 NPLGVMIARGDLAVE----CGWERL----ADMQEEILSICGAA-HVPVIW-----ATQVLESLVKFGV---------PTR 575 (631)
Q Consensus 519 ~~DGImIaRGDL~ve----ig~e~l----~~~Qk~Ii~~c~aa-gkPvi~-----ATQvLESM~~~~~---------PtR 575 (631)
|+|+|+|. -|++.. ++.+.. .-..++|+..+++. ++|+|. .+.+|+.|+..|. .+-
T Consensus 169 Gad~I~i~-Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e~g~dvl~~d~~~~dl 247 (321)
T cd03309 169 EPDLLVYH-DDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAEMGVDSWNVVMTANNT 247 (321)
T ss_pred CCCEEEEe-CCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHHcCCCEEEecCCCCCH
Confidence 67999996 444444 554433 34557888999888 889987 5578999988552 122
Q ss_pred hhHHhhhhc----c-ccCcccccCCccHHHHHHHHHHHHHHHhh
Q 006783 576 AEITDVASA----R-RASCVMLNKGKHVVEAVSTLDKILHINTA 614 (631)
Q Consensus 576 AEvtDva~a----~-gaD~vmLskG~ypveAV~~L~~Il~r~e~ 614 (631)
.|+...... . +.|-.+|..|.-|-+..+...++++.+..
T Consensus 248 ~eak~~~g~k~~l~GNlDp~~L~~~~t~E~i~~~v~~~l~~~g~ 291 (321)
T cd03309 248 AELRRLLGDKVVLAGAIDDVALDTATWPEEDARGVAKAAAECAP 291 (321)
T ss_pred HHHHHHhCCCeEEEcCCChHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 232222221 1 35655555443377777788888887664
No 343
>PRK00568 carbon storage regulator; Provisional
Probab=29.73 E-value=1.4e+02 Score=26.16 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=24.4
Q ss_pred CCCCcEEEeCCeEEEEEEEEeCCEEEEEEE
Q 006783 392 KPGEPIAFDDGKIWGLIQGASISEIVVSIT 421 (631)
Q Consensus 392 ~~Gd~I~iDDGkI~~~V~~v~~~~i~~~V~ 421 (631)
++|+.|.|+| .|...|.++.++.+..=|.
T Consensus 7 K~gEsI~Igd-~I~I~Vl~i~g~~VrlGI~ 35 (76)
T PRK00568 7 KVNEGIVIDD-NIHIKVISIDRGSVRLGFE 35 (76)
T ss_pred eCCCeEEeCC-CeEEEEEEEcCCEEEEEEE
Confidence 7899999998 6999999999888776553
No 344
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=29.73 E-value=1.5e+02 Score=30.89 Aligned_cols=86 Identities=22% Similarity=0.190 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccc-cChhhHHHHHHHHHHHHHhcC
Q 006783 476 DIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVE-CGWERLADMQEEILSICGAAH 554 (631)
Q Consensus 476 Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ve-ig~e~l~~~Qk~Ii~~c~aag 554 (631)
+++....+|.+.|+..++.+.+ .|++.++|+..++-.+ +|-|+.+| .|-=++..+ ++|++.|..+|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM----~Gl~~leE~~avA~ac--------a~~g~~lEPTGGIdl~Nf-~~I~~i~ldaG 202 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPM----GGLKHLEEYAAVAKAC--------AKHGFYLEPTGGIDLDNF-EEIVQIALDAG 202 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeec----CCcccHHHHHHHHHHH--------HHcCCccCCCCCccHHhH-HHHHHHHHHcC
Confidence 3666677788888777777754 5777777766554111 55556555 222233333 78899999999
Q ss_pred CCEEEEechhhhhhh-CCCCCh
Q 006783 555 VPVIWATQVLESLVK-FGVPTR 575 (631)
Q Consensus 555 kPvi~ATQvLESM~~-~~~PtR 575 (631)
+|-++ -+|..|.+. ..-=||
T Consensus 203 v~kvi-PHIYssiIDk~tG~Tr 223 (236)
T TIGR03581 203 VEKVI-PHVYSSIIDKETGNTR 223 (236)
T ss_pred CCeec-cccceeccccccCCCC
Confidence 99987 777777773 333444
No 345
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=29.73 E-value=7.8e+02 Score=27.01 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=67.6
Q ss_pred CCEEEEe----ccCChhHHHHHHHHHHHhCC-----CCceEEEeec--ChhhhcchHHHHHHhhcCCCCcEEEE-ecCCc
Q 006783 463 ADMVGIS----FVRDSCDIAMLRKELEKRKV-----QNLGVVLKIE--TKSGFERLPHILLEAMKSSNPLGVMI-ARGDL 530 (631)
Q Consensus 463 ~D~V~~S----FV~sa~Dv~~lr~~L~~~~~-----~~~~IiaKIE--t~~av~NL~eIl~~a~~~~~~DGImI-aRGDL 530 (631)
+|++..| -.++.+.+....+.+..... -+..+-.-+| +++.++-|++++... .-+.-.+|- .+|+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~h~~~e~~~~~~~~~l~~~~~~g--~~~~~~~~~~~~~~~ 169 (376)
T TIGR02318 92 FDALALGDTESGGRRPDNLRRMIDAISEARDRGLLRADHRLHLRCELPNEEVLPELEELIDDP--RVDLISLMDHTPGQR 169 (376)
T ss_pred EeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchhhhceeEEEEEecCccHHHHHHHHhcCC--CcCEEEEeCCCCCcc
Confidence 6777666 34677777777644454321 2567888898 777777777775422 111111222 11221
Q ss_pred --------c----cccCh--h--------------hH-HHHHHHHHHHHHhcCCCEEEEe-c---hhhhhhhCCC-----
Q 006783 531 --------A----VECGW--E--------------RL-ADMQEEILSICGAAHVPVIWAT-Q---VLESLVKFGV----- 572 (631)
Q Consensus 531 --------~----veig~--e--------------~l-~~~Qk~Ii~~c~aagkPvi~AT-Q---vLESM~~~~~----- 572 (631)
- -..|. + .. .+.-+.++..|++.|+|+..-. + -++.+...+.
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~~~~e~i~~~v~~A~~~G~~v~sH~~~~~e~i~~a~~~Gv~~~E~ 249 (376)
T TIGR02318 170 QFRDLEKYREYYRGKRGLSDDEFDEIVEERIARRAEYGLANRSEIAALARARGIPLASHDDDTPEHVAEAHDLGVTISEF 249 (376)
T ss_pred cccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHCCCChhcc
Confidence 0 01111 0 11 3445678899999999984322 1 2455666777
Q ss_pred CChhhHHhhhhccccC
Q 006783 573 PTRAEITDVASARRAS 588 (631)
Q Consensus 573 PtRAEvtDva~a~gaD 588 (631)
|...|..+.+...|+-
T Consensus 250 ~~t~e~a~~~~~~G~~ 265 (376)
T TIGR02318 250 PTTLEAAKEARSLGMQ 265 (376)
T ss_pred CCCHHHHHHHHHcCCe
Confidence 7777765543333443
No 346
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.36 E-value=7.8e+02 Score=26.86 Aligned_cols=144 Identities=13% Similarity=0.195 Sum_probs=78.7
Q ss_pred CCChhcHHhHHHHHh--cCCEEEE---------eccC---ChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHH
Q 006783 447 GLTTKDLMDLEFVAS--HADMVGI---------SFVR---DSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILL 512 (631)
Q Consensus 447 ~LTekD~~dl~f~~~--~~D~V~~---------SFV~---sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~ 512 (631)
.+|.+++..|...+. ++|.|=+ ||.. ...|.+.++....... +..+.+-+- .+.-+.+++-.
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~--~~~~~~ll~--pg~~~~~dl~~ 95 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK--RAKVAVLLL--PGIGTVHDLKA 95 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC--CCEEEEEec--cCccCHHHHHH
Confidence 456788887776664 7999988 3331 1235556655554432 333333331 11223333322
Q ss_pred HhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCc
Q 006783 513 EAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASC 589 (631)
Q Consensus 513 ~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~ 589 (631)
+. ..|+|.|-|+= ...+.. .-++.+..+++.|.-|.+.- . |+ ..-+..++.+.+.. .|+||
T Consensus 96 -a~-~~gvd~iri~~-------~~~e~d-~~~~~i~~ak~~G~~v~~~l--~--~s--~~~~~e~l~~~a~~~~~~Ga~~ 159 (333)
T TIGR03217 96 -AY-DAGARTVRVAT-------HCTEAD-VSEQHIGMARELGMDTVGFL--M--MS--HMTPPEKLAEQAKLMESYGADC 159 (333)
T ss_pred -HH-HCCCCEEEEEe-------ccchHH-HHHHHHHHHHHcCCeEEEEE--E--cc--cCCCHHHHHHHHHHHHhcCCCE
Confidence 21 22678888751 222222 34688899999998876522 2 11 23344556655544 69999
Q ss_pred cccc--CCccHHHHHHHHHHHHH
Q 006783 590 VMLN--KGKHVVEAVSTLDKILH 610 (631)
Q Consensus 590 vmLs--kG~ypveAV~~L~~Il~ 610 (631)
|.+. .|-.--+-|.-+-+.++
T Consensus 160 i~i~DT~G~~~P~~v~~~v~~l~ 182 (333)
T TIGR03217 160 VYIVDSAGAMLPDDVRDRVRALK 182 (333)
T ss_pred EEEccCCCCCCHHHHHHHHHHHH
Confidence 9996 66554444444444443
No 347
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.26 E-value=7.8e+02 Score=26.82 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=34.1
Q ss_pred CCcEEEEecCCccccc---ChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 519 NPLGVMIARGDLAVEC---GWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 519 ~~DGImIaRGDL~vei---g~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
|+|.|=|..|...... +... ....+.+ ..+...++|||... ++-|.+++..+... |+|+||+.
T Consensus 248 GvD~I~Vs~g~~~~~~~~~~~~~-~~~~~~i-k~~~~~~iPVi~~G---------gi~t~e~ae~~l~~-gaD~V~~g 313 (353)
T cd04735 248 GLDYLHISLWDFDRKSRRGRDDN-QTIMELV-KERIAGRLPLIAVG---------SINTPDDALEALET-GADLVAIG 313 (353)
T ss_pred CCCEEEeccCccccccccCCcch-HHHHHHH-HHHhCCCCCEEEEC---------CCCCHHHHHHHHHc-CCChHHHh
Confidence 7899999776543221 1111 1111222 11112378999743 34455555555554 89999987
No 348
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=29.16 E-value=2.4e+02 Score=29.82 Aligned_cols=86 Identities=21% Similarity=0.187 Sum_probs=54.2
Q ss_pred ChhcHHhH-HHHHh--cCCEEEEeccCC--hhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEE
Q 006783 449 TTKDLMDL-EFVAS--HADMVGISFVRD--SCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGV 523 (631)
Q Consensus 449 TekD~~dl-~f~~~--~~D~V~~SFV~s--a~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGI 523 (631)
.+.|++.. +.+++ .+|.|.+|--.+ +.++..+++.=+.. . +.|+ |=+---.+|+.+++..+ ||+
T Consensus 156 ~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~--~-~PVl--vGSGvt~~Ni~~~l~~A------DG~ 224 (254)
T PF03437_consen 156 ATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAV--P-VPVL--VGSGVTPENIAEYLSYA------DGA 224 (254)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcC--C-CCEE--EecCCCHHHHHHHHHhC------CEE
Confidence 34444443 34444 599999998875 33555544432211 2 4455 45555568999999887 999
Q ss_pred EEec-----CCcccccChhhHHHHHHH
Q 006783 524 MIAR-----GDLAVECGWERLADMQEE 545 (631)
Q Consensus 524 mIaR-----GDL~veig~e~l~~~Qk~ 545 (631)
+||- |...-.+..+++..+.+.
T Consensus 225 IVGS~~K~~G~~~n~VD~~Rv~~fm~~ 251 (254)
T PF03437_consen 225 IVGSYFKKDGKWENPVDPERVRRFMEA 251 (254)
T ss_pred EEeeeeeeCCEeCCcCCHHHHHHHHHH
Confidence 9973 566666777777766654
No 349
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=29.07 E-value=5.7e+02 Score=25.19 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=48.2
Q ss_pred HHHHHh-cCCEEEE-----eccCC----hhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEE
Q 006783 456 LEFVAS-HADMVGI-----SFVRD----SCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMI 525 (631)
Q Consensus 456 l~f~~~-~~D~V~~-----SFV~s----a~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImI 525 (631)
++.+.+ ++|+|.+ +|+.+ .+.++.+++.+. ....+-.++-.. .+.++.+. .+ |+|||.+
T Consensus 22 ~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~----~~~~v~l~v~d~--~~~i~~~~-~~----g~d~v~v 90 (220)
T PRK05581 22 VKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTK----LPLDVHLMVENP--DRYVPDFA-KA----GADIITF 90 (220)
T ss_pred HHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCC----CcEEEEeeeCCH--HHHHHHHH-Hc----CCCEEEE
Confidence 445566 6999999 98854 344444443221 122243555543 22344443 44 6899777
Q ss_pred ecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEe
Q 006783 526 ARGDLAVECGWERLADMQEEILSICGAAHVPVIWAT 561 (631)
Q Consensus 526 aRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~AT 561 (631)
-=+ .. ....+.+..+++.|+.+++++
T Consensus 91 h~~-------~~---~~~~~~~~~~~~~~~~~g~~~ 116 (220)
T PRK05581 91 HVE-------AS---EHIHRLLQLIKSAGIKAGLVL 116 (220)
T ss_pred eec-------cc---hhHHHHHHHHHHcCCEEEEEE
Confidence 422 11 122455888899999888754
No 350
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=28.94 E-value=2.5e+02 Score=29.48 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCcEEEE--ecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCccccc
Q 006783 519 NPLGVMI--ARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASCVMLN 593 (631)
Q Consensus 519 ~~DGImI--aRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmLs 593 (631)
|++||++ .=|+. ..+..++-.++-+..+..+.. .+|||+-+ +..+-.|+.+.+.. .|||++|+.
T Consensus 35 Gv~gi~~~GstGE~-~~Lt~~Er~~~~~~~~~~~~~-~~~viagv---------~~~~~~~ai~~a~~a~~~Gad~v~~~ 103 (288)
T cd00954 35 GVDGLYVNGSTGEG-FLLSVEERKQIAEIVAEAAKG-KVTLIAHV---------GSLNLKESQELAKHAEELGYDAISAI 103 (288)
T ss_pred CCCEEEECcCCcCc-ccCCHHHHHHHHHHHHHHhCC-CCeEEecc---------CCCCHHHHHHHHHHHHHcCCCEEEEe
Q ss_pred ----CCccHHHHHHHHHHHHHH
Q 006783 594 ----KGKHVVEAVSTLDKILHI 611 (631)
Q Consensus 594 ----kG~ypveAV~~L~~Il~r 611 (631)
..+-.-+-++....|+..
T Consensus 104 ~P~y~~~~~~~i~~~~~~v~~a 125 (288)
T cd00954 104 TPFYYKFSFEEIKDYYREIIAA 125 (288)
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
No 351
>PLN02535 glycolate oxidase
Probab=28.67 E-value=2.6e+02 Score=31.09 Aligned_cols=91 Identities=26% Similarity=0.368 Sum_probs=50.0
Q ss_pred ChhHHHHHHHHHHHhCCCCceEEEe-ecChhhhcchHHHHHHhhcCCCCcEEEEe-cCCcccccChhhHHHHHHHHHHHH
Q 006783 473 DSCDIAMLRKELEKRKVQNLGVVLK-IETKSGFERLPHILLEAMKSSNPLGVMIA-RGDLAVECGWERLADMQEEILSIC 550 (631)
Q Consensus 473 sa~Dv~~lr~~L~~~~~~~~~IiaK-IEt~~av~NL~eIl~~a~~~~~~DGImIa-RGDL~veig~e~l~~~Qk~Ii~~c 550 (631)
+-+||+.+++.. +..||+| |-|++-...+ .. .|+|+|.+. -| |-.+++. +...+.+....
T Consensus 211 tW~~i~~lr~~~------~~PvivKgV~~~~dA~~a----~~----~GvD~I~vsn~G--Gr~~d~~--~~t~~~L~ev~ 272 (364)
T PLN02535 211 SWKDIEWLRSIT------NLPILIKGVLTREDAIKA----VE----VGVAGIIVSNHG--ARQLDYS--PATISVLEEVV 272 (364)
T ss_pred CHHHHHHHHhcc------CCCEEEecCCCHHHHHHH----Hh----cCCCEEEEeCCC--cCCCCCC--hHHHHHHHHHH
Confidence 667888777643 3567777 6555443222 22 278999984 12 2222211 11112222222
Q ss_pred Hhc--CCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 551 GAA--HVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 551 ~aa--gkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
++. .+|||... ++-+- .|++.+ .|||+|++.
T Consensus 273 ~av~~~ipVi~dG---------GIr~g---~Dv~KALalGA~aV~vG 307 (364)
T PLN02535 273 QAVGGRVPVLLDG---------GVRRG---TDVFKALALGAQAVLVG 307 (364)
T ss_pred HHHhcCCCEEeeC---------CCCCH---HHHHHHHHcCCCEEEEC
Confidence 222 58988744 55553 567666 799999997
No 352
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=28.58 E-value=1.8e+02 Score=29.28 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=46.6
Q ss_pred CCCCccce-ecccCceEEeccCCCcccCCCCCCCCCccEEeeCchhhhc--ccCCCCcEEEeC--CeEEEEEEEEeCCEE
Q 006783 342 VPAVEPFI-RLRVGDLLTISRDSSCEQDESSEPISSAHRITCSSSCLFD--SVKPGEPIAFDD--GKIWGLIQGASISEI 416 (631)
Q Consensus 342 ~p~~~~~i-~l~~Gd~l~lt~~~~~~~~~~~~~~~~~~~I~ct~p~l~~--~v~~Gd~I~iDD--GkI~~~V~~v~~~~i 416 (631)
+|..|+.+ -+.+||...++-...-.. |.- .....=.++..++-. .+.+|..+.+++ |++.++|++|+++.+
T Consensus 43 i~glE~al~g~~~Ge~~~V~IpPE~Af---Ge~-~~~lvq~vp~~~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V~~~~V 118 (174)
T COG1047 43 IPGLEEALLGKEVGEEFTVEIPPEDAF---GEY-DPDLVQRVPRDEFQGVGELEVGMEVEAEGGDGEIPGVVTEVSGDRV 118 (174)
T ss_pred chhHHHHHhCCCCCceeEEEeCchHhc---CCC-ChHHeEEecHHHhCcCCCCCCCcEEEEcCCCceeeEEEEEEcCCEE
Confidence 44444443 578899887775211000 100 001222344445555 489999999975 588999999999988
Q ss_pred EEEEEe
Q 006783 417 VVSITH 422 (631)
Q Consensus 417 ~~~V~~ 422 (631)
.+---|
T Consensus 119 ~VDfNH 124 (174)
T COG1047 119 TVDFNH 124 (174)
T ss_pred EEeCCC
Confidence 875433
No 353
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=28.54 E-value=6.8e+02 Score=27.67 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=5.6
Q ss_pred hhhcchHHHHHHh
Q 006783 502 SGFERLPHILLEA 514 (631)
Q Consensus 502 ~av~NL~eIl~~a 514 (631)
++++|.-.++.++
T Consensus 114 ~av~nA~rl~~ea 126 (332)
T PLN02424 114 QAVESAVRMLKEG 126 (332)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444333
No 354
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=28.51 E-value=2.2e+02 Score=30.92 Aligned_cols=71 Identities=11% Similarity=0.218 Sum_probs=45.3
Q ss_pred hhcCCCCCCCCeEEEEecCCCCChHH---HHHHHH-hCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCC
Q 006783 160 LLLGPLRHNQTNHIMVTVGQEASESE---ISDILK-AGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLA 234 (631)
Q Consensus 160 ~l~G~~~~~R~TkImvTlgp~aa~~~---i~~Li~-aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~ 234 (631)
.|||.... .+...-+|++....++. ++.+++ .|-+.+.|-+...++ .+-++.|+.+.+.+|..+.+++|--
T Consensus 121 ~LLGg~~r-~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~---~~d~~~v~~~re~~g~~~~l~~DaN 195 (368)
T TIGR02534 121 ELLGGRVR-DSVDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIGARDP---ADDVAHVVAIAKALGDRASVRVDVN 195 (368)
T ss_pred HHhCCCCC-CceEEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeCCCCc---HHHHHHHHHHHHhcCCCcEEEEECC
Confidence 45665422 34556666655333322 666664 799999998866554 4455666666667888889999953
No 355
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.32 E-value=1.4e+02 Score=29.15 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=31.5
Q ss_pred CcEEEE--ecCCccccc--------ChhhHHHHHHHHHHHHHhcCCCEEEEe
Q 006783 520 PLGVMI--ARGDLAVEC--------GWERLADMQEEILSICGAAHVPVIWAT 561 (631)
Q Consensus 520 ~DGImI--aRGDL~vei--------g~e~l~~~Qk~Ii~~c~aagkPvi~AT 561 (631)
+|.|+| |=-|+.... +.+++..-.++|+..|++.|.+||+.|
T Consensus 75 p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~t 126 (204)
T cd01830 75 VRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIGAT 126 (204)
T ss_pred CCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEec
Confidence 455554 444765443 678888888999999999999999876
No 356
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=28.31 E-value=7.9e+02 Score=26.61 Aligned_cols=143 Identities=15% Similarity=0.098 Sum_probs=76.7
Q ss_pred CChhc-HHhHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEE
Q 006783 448 LTTKD-LMDLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMI 525 (631)
Q Consensus 448 LTekD-~~dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImI 525 (631)
+-.++ ....+...+ ++|+|..|...++ +.++...++... +..++|-+- +|+|-+... .-|.|-|=-
T Consensus 71 i~K~~~~~Ea~~L~eaGvDiIDaT~r~rP--~~~~~~~iK~~~--~~l~MAD~s------tleEal~a~--~~Gad~I~T 138 (283)
T cd04727 71 KVRIGHFVEAQILEALGVDMIDESEVLTP--ADEEHHIDKHKF--KVPFVCGAR------NLGEALRRI--SEGAAMIRT 138 (283)
T ss_pred eeehhHHHHHHHHHHcCCCEEeccCCCCc--HHHHHHHHHHHc--CCcEEccCC------CHHHHHHHH--HCCCCEEEe
Confidence 33344 444454455 8999999998888 355555555432 577887554 455544332 113333221
Q ss_pred e-cCCcc-----------------cccCh--hhHHH-------HHHHHHHHHHhcCCCEE-EEechhhhhhhCCCCChhh
Q 006783 526 A-RGDLA-----------------VECGW--ERLAD-------MQEEILSICGAAHVPVI-WATQVLESLVKFGVPTRAE 577 (631)
Q Consensus 526 a-RGDL~-----------------veig~--e~l~~-------~Qk~Ii~~c~aagkPvi-~ATQvLESM~~~~~PtRAE 577 (631)
- -|.=+ ...|+ +.+.. =.+.+-..++...+||| +| ..++=|.+.
T Consensus 139 Tl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iA--------eGGI~Tpen 210 (283)
T cd04727 139 KGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFA--------AGGVATPAD 210 (283)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEE--------eCCCCCHHH
Confidence 1 01000 00111 01100 01223334445579997 33 334546555
Q ss_pred HHhhhhccccCccccc----CCccHHHHHHHHHHHHHH
Q 006783 578 ITDVASARRASCVMLN----KGKHVVEAVSTLDKILHI 611 (631)
Q Consensus 578 vtDva~a~gaD~vmLs----kG~ypveAV~~L~~Il~r 611 (631)
+..+.. .|+|+|++. +-+.|.+.++.+.+.+.+
T Consensus 211 a~~v~e-~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 211 AALMMQ-LGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred HHHHHH-cCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 444443 699999998 445799999998887776
No 357
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=28.28 E-value=7.3e+02 Score=26.17 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=80.2
Q ss_pred CCChhcHHhHHHHH-h-cCCEEEEe-ccCCh-----hHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCC
Q 006783 447 GLTTKDLMDLEFVA-S-HADMVGIS-FVRDS-----CDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSS 518 (631)
Q Consensus 447 ~LTekD~~dl~f~~-~-~~D~V~~S-FV~sa-----~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~ 518 (631)
.+|.+++..|...+ + ++|.|-++ |+... .|-..+...+.... +..+.+-.-+.++++ ..+..
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~--~~~~~~~~~~~~dv~---~A~~~----- 85 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRP--GVRYSALVPNLRGAE---RALAA----- 85 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCC--CCEEEEECCCHHHHH---HHHHc-----
Confidence 35667776666544 4 79999886 44332 35555555555432 344444443444433 22221
Q ss_pred CCcEEE--EecCCc----ccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc---cccCc
Q 006783 519 NPLGVM--IARGDL----AVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA---RRASC 589 (631)
Q Consensus 519 ~~DGIm--IaRGDL----~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a---~gaD~ 589 (631)
++|.|- +.=.|. -+....+...+.-++.+..++.+|+-|.+.-.+-=+.-..+.-+...+.+++.. .|+|.
T Consensus 86 g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 165 (274)
T cd07938 86 GVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDE 165 (274)
T ss_pred CcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 345544 444443 112334566677778889999999988542211000001111233444444443 69999
Q ss_pred cccc--CCc-cHHHHHHHHHHHH
Q 006783 590 VMLN--KGK-HVVEAVSTLDKIL 609 (631)
Q Consensus 590 vmLs--kG~-ypveAV~~L~~Il 609 (631)
+-|. .|- .|.+.-+....+.
T Consensus 166 i~l~DT~G~~~P~~v~~lv~~l~ 188 (274)
T cd07938 166 ISLGDTIGVATPAQVRRLLEAVL 188 (274)
T ss_pred EEECCCCCccCHHHHHHHHHHHH
Confidence 9997 554 4555544444443
No 358
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=28.27 E-value=2.4e+02 Score=30.75 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=37.0
Q ss_pred HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCC
Q 006783 186 ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAG 235 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~G 235 (631)
+++..+.|.+.+.|-.. ....+++-++.|+.+.+.+|..+.|++|--|
T Consensus 151 a~~~~~~Gf~~~Kik~~--~~~~~~~di~~i~~vR~~~G~~~~l~vDan~ 198 (368)
T cd03329 151 AEECKALGYRAIKLHPW--GPGVVRRDLKACLAVREAVGPDMRLMHDGAH 198 (368)
T ss_pred HHHHHHcCCCEEEEecC--CchhHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 77788899999999422 2223677888888888889999999999853
No 359
>PLN02417 dihydrodipicolinate synthase
Probab=28.21 E-value=6e+02 Score=26.69 Aligned_cols=94 Identities=12% Similarity=0.005 Sum_probs=48.5
Q ss_pred hHHHHHh-cCCEEEEe------ccCChhHHHHHHHHHHHhCCCCceEEEeec---ChhhhcchHHHHHHhhcCCCCcEEE
Q 006783 455 DLEFVAS-HADMVGIS------FVRDSCDIAMLRKELEKRKVQNLGVVLKIE---TKSGFERLPHILLEAMKSSNPLGVM 524 (631)
Q Consensus 455 dl~f~~~-~~D~V~~S------FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIE---t~~av~NL~eIl~~a~~~~~~DGIm 524 (631)
.++|.++ ++|.|.+. +.-|.++-.++-+...+.-...+.||+-+= |.++++....- . ..|.|+||
T Consensus 27 ~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a-~----~~Gadav~ 101 (280)
T PLN02417 27 LVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQG-F----AVGMHAAL 101 (280)
T ss_pred HHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHH-H----HcCCCEEE
Confidence 3456555 68877662 223444444443333332224577777774 45555443332 2 23788888
Q ss_pred EecCCcccccChhhHHHHHHHHHHHHHhcCCCEEE
Q 006783 525 IARGDLAVECGWERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 525 IaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
+.+-...- .+-+.+...-+.|.. + . |+++
T Consensus 102 ~~~P~y~~-~~~~~i~~~f~~va~---~-~-pi~l 130 (280)
T PLN02417 102 HINPYYGK-TSQEGLIKHFETVLD---M-G-PTII 130 (280)
T ss_pred EcCCccCC-CCHHHHHHHHHHHHh---h-C-CEEE
Confidence 87765432 333455555554443 2 3 7764
No 360
>PRK05748 replicative DNA helicase; Provisional
Probab=28.08 E-value=4.4e+02 Score=29.57 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhh--CCCCChhhHHhhhhc-cccCccccc
Q 006783 537 ERLADMQEEILSICGAAHVPVIWATQVLESLVK--FGVPTRAEITDVASA-RRASCVMLN 593 (631)
Q Consensus 537 e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~--~~~PtRAEvtDva~a-~gaD~vmLs 593 (631)
..+.++-+.+=.+|+..++|||+.+|+=..--+ ...|+.+.+.|-... ..||.||+-
T Consensus 338 ~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l 397 (448)
T PRK05748 338 QEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFL 397 (448)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEE
Confidence 457777788888899999999999997654322 346665544443333 689988874
No 361
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.99 E-value=1.8e+02 Score=28.26 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=42.3
Q ss_pred HhHHHHHh-cCCEEEEeccC--ChhHHHHHHHHHHHhCCCCceEE-EeecChhhhcchHHHHHHhhcCCCCcEEEEe
Q 006783 454 MDLEFVAS-HADMVGISFVR--DSCDIAMLRKELEKRKVQNLGVV-LKIETKSGFERLPHILLEAMKSSNPLGVMIA 526 (631)
Q Consensus 454 ~dl~f~~~-~~D~V~~SFV~--sa~Dv~~lr~~L~~~~~~~~~Ii-aKIEt~~av~NL~eIl~~a~~~~~~DGImIa 526 (631)
+.+.-|++ .+|.|++|-.. -.+++..+.+.|+++|.+++.++ .=+=.++-+.+|.+. |+|+||-.
T Consensus 54 e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~--------G~~~if~p 122 (143)
T COG2185 54 EAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEM--------GVDRIFGP 122 (143)
T ss_pred HHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHh--------CcceeeCC
Confidence 34455666 69999999763 45677888899999998888743 333333333333222 67888754
No 362
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=27.89 E-value=2.4e+02 Score=28.19 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCCCceEEEeecChhh-hcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCC
Q 006783 477 IAMLRKELEKRKVQNLGVVLKIETKSG-FERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHV 555 (631)
Q Consensus 477 v~~lr~~L~~~~~~~~~IiaKIEt~~a-v~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagk 555 (631)
++.+.+.|++.+ .++.|.+.-|.... .++.++++.. .|-|+.+-.+ ......+-+.|+++++
T Consensus 77 a~~~~~~L~~lN-p~v~i~~~~~~~~~~~~~~~~~~~~------~dvVi~~~d~----------~~~~~~ln~~c~~~~i 139 (198)
T cd01485 77 AAASYEFLQELN-PNVKLSIVEEDSLSNDSNIEEYLQK------FTLVIATEEN----------YERTAKVNDVCRKHHI 139 (198)
T ss_pred HHHHHHHHHHHC-CCCEEEEEecccccchhhHHHHHhC------CCEEEECCCC----------HHHHHHHHHHHHHcCC
Confidence 445667777776 56666655444431 3566666643 3877776332 3355568899999999
Q ss_pred CEEEEe
Q 006783 556 PVIWAT 561 (631)
Q Consensus 556 Pvi~AT 561 (631)
|+|.+.
T Consensus 140 p~i~~~ 145 (198)
T cd01485 140 PFISCA 145 (198)
T ss_pred CEEEEE
Confidence 999864
No 363
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=27.83 E-value=3.1e+02 Score=27.34 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCC
Q 006783 477 IAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVP 556 (631)
Q Consensus 477 v~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkP 556 (631)
++.+++.|.+.+ .++.|-..-+... ++.++... +.|-|+.+-.+ ......+-..|++.++|
T Consensus 77 a~a~~~~L~~lN-p~v~i~~~~~~~~--~~~~~~~~------~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip 137 (197)
T cd01492 77 AEASLERLRALN-PRVKVSVDTDDIS--EKPEEFFS------QFDVVVATELS----------RAELVKINELCRKLGVK 137 (197)
T ss_pred HHHHHHHHHHHC-CCCEEEEEecCcc--ccHHHHHh------CCCEEEECCCC----------HHHHHHHHHHHHHcCCC
Confidence 455667777776 4554444333332 44555553 34888877443 24566788899999999
Q ss_pred EEEEe
Q 006783 557 VIWAT 561 (631)
Q Consensus 557 vi~AT 561 (631)
.+.+.
T Consensus 138 ~i~~~ 142 (197)
T cd01492 138 FYATG 142 (197)
T ss_pred EEEEE
Confidence 98654
No 364
>PTZ00369 Ras-like protein; Provisional
Probab=27.71 E-value=2.8e+02 Score=26.63 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=49.5
Q ss_pred CcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc--CCcc
Q 006783 520 PLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN--KGKH 597 (631)
Q Consensus 520 ~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs--kG~y 597 (631)
.||+++- -|..-.-.++.+....+++.......+.|+++.-.-.+ +.....-+..+....+...+...+..| .|.-
T Consensus 77 ~d~iilv-~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D-l~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~g 154 (189)
T PTZ00369 77 GQGFLCV-YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCD-LDSERQVSTGEGQELAKSFGIPFLETSAKQRVN 154 (189)
T ss_pred CCEEEEE-EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc-cccccccCHHHHHHHHHHhCCEEEEeeCCCCCC
Confidence 3666554 34433334555666666666555555778764333333 111111133344444444566666666 7888
Q ss_pred HHHHHHHHHHHHHHH
Q 006783 598 VVEAVSTLDKILHIN 612 (631)
Q Consensus 598 pveAV~~L~~Il~r~ 612 (631)
.-+...+|.+.+.+.
T Consensus 155 i~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 155 VDEAFYELVREIRKY 169 (189)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887766654
No 365
>PLN02979 glycolate oxidase
Probab=27.68 E-value=4.1e+02 Score=29.73 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCC-cccccC---hhhHHHHHHHHHH
Q 006783 473 DSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGD-LAVECG---WERLADMQEEILS 548 (631)
Q Consensus 473 sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGD-L~veig---~e~l~~~Qk~Ii~ 548 (631)
+-+||..+|+. .+..||.|- |-+.++..... ..|+|||.|+-.- =....+ ++-++++++.+
T Consensus 211 tW~dl~wlr~~------~~~PvivKg-----V~~~~dA~~a~--~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~-- 275 (366)
T PLN02979 211 SWKDVQWLQTI------TKLPILVKG-----VLTGEDARIAI--QAGAAGIIVSNHGARQLDYVPATISALEEVVKAT-- 275 (366)
T ss_pred CHHHHHHHHhc------cCCCEEeec-----CCCHHHHHHHH--hcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHh--
Confidence 56788777763 346788872 22333222111 2378999993211 001111 22333332221
Q ss_pred HHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 549 ICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 549 ~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
...+|||... |+=+ =+|++.| .|||+|++.
T Consensus 276 ---~~~~~Vi~dG---------GIr~---G~Di~KALALGAdaV~iG 307 (366)
T PLN02979 276 ---QGRIPVFLDG---------GVRR---GTDVFKALALGASGIFIG 307 (366)
T ss_pred ---CCCCeEEEeC---------CcCc---HHHHHHHHHcCCCEEEEc
Confidence 1247888643 4444 3578776 699999986
No 366
>PRK09165 replicative DNA helicase; Provisional
Probab=27.53 E-value=3.6e+02 Score=31.01 Aligned_cols=57 Identities=16% Similarity=0.321 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhh--CCCCChhhHHhhhhc-cccCccccc
Q 006783 537 ERLADMQEEILSICGAAHVPVIWATQVLESLVK--FGVPTRAEITDVASA-RRASCVMLN 593 (631)
Q Consensus 537 e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~--~~~PtRAEvtDva~a-~gaD~vmLs 593 (631)
..+.++-+.+-.+|+..++|||+.+|+=-..-+ ...|+.+.+.|-... +.||.||+-
T Consensus 366 ~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 425 (497)
T PRK09165 366 QEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQDADVVMFV 425 (497)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhhhccchhccCCEEEEE
Confidence 468888888999999999999999996544322 346665554443333 689988875
No 367
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=27.42 E-value=1e+02 Score=28.06 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=31.5
Q ss_pred hhhhcccCCCCcEEEeCCeEEEEEEEEeCCEEEEEEEecCCCCceecCC
Q 006783 385 SCLFDSVKPGEPIAFDDGKIWGLIQGASISEIVVSITHAGPRGTKLGSG 433 (631)
Q Consensus 385 p~l~~~v~~Gd~I~iDDGkI~~~V~~v~~~~i~~~V~~a~~~Gg~L~s~ 433 (631)
.++.+++++||+|.---| |.++|.+++++.+..++- .|.+++-.
T Consensus 38 ~~ml~sL~kGD~VvT~gG-i~G~V~~v~d~~v~I~l~----~~~~i~~~ 81 (97)
T COG1862 38 QELLNSLKKGDEVVTIGG-IVGTVTKVGDDTVEIELG----DGTKIKFE 81 (97)
T ss_pred HHHHHhccCCCEEEEcCC-eEEEEEEEecCcEEEEEC----CCeEEEEE
Confidence 478999999999998655 557888999887554432 35555433
No 368
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=27.28 E-value=1.2e+02 Score=35.43 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=15.4
Q ss_pred CChhhHHhhhhc-cccCccccc
Q 006783 573 PTRAEITDVASA-RRASCVMLN 593 (631)
Q Consensus 573 PtRAEvtDva~a-~gaD~vmLs 593 (631)
|-...|..++.- .|||.|-++
T Consensus 444 sl~eKIe~IAkkIYGA~~V~~s 465 (557)
T PRK13505 444 SLEEKIEKIATKIYGAKGVEFS 465 (557)
T ss_pred cHHHHHHHHHHHccCCCCeeEC
Confidence 445567777765 799999876
No 369
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=27.25 E-value=8.6e+02 Score=26.67 Aligned_cols=153 Identities=18% Similarity=0.088 Sum_probs=91.1
Q ss_pred hhcHHhHHHHHhcC---CEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCC--cEEE
Q 006783 450 TKDLMDLEFVASHA---DMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNP--LGVM 524 (631)
Q Consensus 450 ekD~~dl~f~~~~~---D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~--DGIm 524 (631)
++|-+-|+-+++.+ ..+..|- +.+..+.+-....+.+ ..+|+. ++.-++-+.++..... ..|. +-|+
T Consensus 136 ~kD~evleaale~~~g~~pLInSa--t~en~~~i~~lA~~y~---~~Vva~--s~~Dln~ak~L~~~l~-~~Gi~~edIv 207 (319)
T PRK04452 136 EKDAEVLEKVAEAAEGERCLLGSA--EEDNYKKIAAAAMAYG---HAVIAW--SPLDINLAKQLNILLT-ELGVPRERIV 207 (319)
T ss_pred CCCHHHHHHHHHHhCCCCCEEEEC--CHHHHHHHHHHHHHhC---CeEEEE--cHHHHHHHHHHHHHHH-HcCCCHHHEE
Confidence 56999898877632 2466664 4667777777666665 234444 2333444444433322 2256 8889
Q ss_pred EecCCcccccChhhHHHHHHHHHHHHHh----cCCCEEEEech-----hhhhh-hC------CCCChh---hHHhhhhc-
Q 006783 525 IARGDLAVECGWERLADMQEEILSICGA----AHVPVIWATQV-----LESLV-KF------GVPTRA---EITDVASA- 584 (631)
Q Consensus 525 IaRGDL~veig~e~l~~~Qk~Ii~~c~a----agkPvi~ATQv-----LESM~-~~------~~PtRA---EvtDva~a- 584 (631)
+.++=.++-+|.+.....++.|=..+-+ .+-|+|..+-. =|+.. .. +.-.|+ |+.-++..
T Consensus 208 iDP~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a~~~~ 287 (319)
T PRK04452 208 MDPTTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVGFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTALTLL 287 (319)
T ss_pred EeCCcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecchhhhhhccccccccccccccccchhccHHHHHHHHHHHH
Confidence 9999998888998888888888666543 56787743210 01111 00 001122 32222222
Q ss_pred -cccCcccccCCccHHHHHHHHHHHHHHHhh
Q 006783 585 -RRASCVMLNKGKHVVEAVSTLDKILHINTA 614 (631)
Q Consensus 585 -~gaD~vmLskG~ypveAV~~L~~Il~r~e~ 614 (631)
.|+|.+|+. || ++|+++.+++..+-.
T Consensus 288 ~~ga~i~vm~---hp-~s~~~~~~~~~~l~~ 314 (319)
T PRK04452 288 LAGADIFMMR---HP-ESVKTLKEIIDTLMG 314 (319)
T ss_pred HhcCcEEEEe---CH-HHHHHHHHHHHHHhc
Confidence 589988885 55 689999999887653
No 370
>PRK15447 putative protease; Provisional
Probab=27.06 E-value=1.7e+02 Score=31.19 Aligned_cols=41 Identities=15% Similarity=-0.091 Sum_probs=29.6
Q ss_pred CCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEe
Q 006783 519 NPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWAT 561 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~AT 561 (631)
|+|+|.++=..++.-.+| -.+-.++++..|+++||.|.++|
T Consensus 28 gaDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~ 68 (301)
T PRK15447 28 PVDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLST 68 (301)
T ss_pred CCCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEe
Confidence 789999985555543333 12344567788899999999987
No 371
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=27.04 E-value=1.7e+02 Score=27.79 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=30.2
Q ss_pred HHHHHh-cCCEEEEecc--CChhHHHHHHHHHHHhCCCCceEEE
Q 006783 456 LEFVAS-HADMVGISFV--RDSCDIAMLRKELEKRKVQNLGVVL 496 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV--~sa~Dv~~lr~~L~~~~~~~~~Iia 496 (631)
++-+.+ ++|+|++|.. .+...+.++.+.|++.+..++.|+.
T Consensus 43 v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~viv 86 (128)
T cd02072 43 IDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYV 86 (128)
T ss_pred HHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEE
Confidence 344555 5999999986 5666788999999888765555554
No 372
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=26.99 E-value=4.7e+02 Score=28.47 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=53.4
Q ss_pred chhhhHhHHhHHHHhHHhhcCCCCCCC--CeEEEEecCCCCChHHHHHHHHh--CCCEEEeecCCCChHHHHHHHHHHHH
Q 006783 143 GNFMIQALGKKLSANKELLLGPLRHNQ--TNHIMVTVGQEASESEISDILKA--GASIIRINCAHGNPSIWSEIIRRVKT 218 (631)
Q Consensus 143 ~~~~~~~~~~~L~~~~~~l~G~~~~~R--~TkImvTlgp~aa~~~i~~Li~a--GMdvaRINcAHg~~e~w~~mI~~vR~ 218 (631)
..|...+....|..-.+.-.+..++.. +..+-+|+|. ...+++.++++. |.+.+.|-++... ..+.+-++.|+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~vp~~~tv~~-~~~e~~~~~~~~~~G~~~~KvKVg~~~-~~~~~Di~rv~a 126 (327)
T PRK02901 49 LEYDPAEAAAWLASAIEAAYGGPPPPVRDRVPVNATVPA-VDAAQVPEVLARFPGCRTAKVKVAEPG-QTLADDVARVNA 126 (327)
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCcccCCeEEeeEEeCC-CCHHHHHHHHHHhCCCCEEEEEECCCC-CCHHHHHHHHHH
Confidence 344444544556555444443333333 4445566543 222337777776 9999999987431 134455666666
Q ss_pred HHhhcCCceEEEecCCC
Q 006783 219 SSQMLEMPCQILMDLAG 235 (631)
Q Consensus 219 a~~~~g~~~~IlmDL~G 235 (631)
..+.+|..+.|.+|--|
T Consensus 127 vRe~lGpd~~LrvDAN~ 143 (327)
T PRK02901 127 VRDALGPDGRVRVDANG 143 (327)
T ss_pred HHHhcCCCCEEEEECCC
Confidence 66678888888888643
No 373
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=26.95 E-value=6.3e+02 Score=27.82 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=74.4
Q ss_pred eeecCCCcccCCCCChhcHHhHHHHHhcCCEEEE----eccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHH
Q 006783 435 SINIPKSNIHFEGLTTKDLMDLEFVASHADMVGI----SFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHI 510 (631)
Q Consensus 435 GINlP~~~l~lp~LTekD~~dl~f~~~~~D~V~~----SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eI 510 (631)
|-|+=|.. +++ ..++-.+-++....++--|++ |+.++..-+++++.+++..| +.++-.= ...+..++..
T Consensus 133 g~NvTGvs-D~~-~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~G---l~vve~~--v~~~ndi~~a 205 (322)
T COG2984 133 GGNVTGVS-DLL-PVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAG---LEVVEAA--VTSVNDIPRA 205 (322)
T ss_pred CCceeecC-Ccc-hHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCC---CEEEEEe--cCcccccHHH
Confidence 45554443 222 345666667777778777766 55677788899999888766 4443221 1123333444
Q ss_pred HHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCC
Q 006783 511 LLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVP 573 (631)
Q Consensus 511 l~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~P 573 (631)
.....+ .+|.||+--..+ +...-+-++..++++++|+|.++ ++|++.|-+
T Consensus 206 ~~~l~g--~~d~i~~p~dn~--------i~s~~~~l~~~a~~~kiPli~sd---~~~V~~Ga~ 255 (322)
T COG2984 206 VQALLG--KVDVIYIPTDNL--------IVSAIESLLQVANKAKIPLIASD---TSSVKEGAL 255 (322)
T ss_pred HHHhcC--CCcEEEEecchH--------HHHHHHHHHHHHHHhCCCeecCC---HHHHhcCcc
Confidence 333222 358888853333 33467888999999999999877 677777655
No 374
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=26.88 E-value=4e+02 Score=28.03 Aligned_cols=84 Identities=18% Similarity=0.323 Sum_probs=45.4
Q ss_pred CceEEEee--cChhhhcchHHHHHHhhcCCC-CcEEEE-------ecCCcccccChhhHHHHHHHHHHHHHhc-CCCEEE
Q 006783 491 NLGVVLKI--ETKSGFERLPHILLEAMKSSN-PLGVMI-------ARGDLAVECGWERLADMQEEILSICGAA-HVPVIW 559 (631)
Q Consensus 491 ~~~IiaKI--Et~~av~NL~eIl~~a~~~~~-~DGImI-------aRGDL~veig~e~l~~~Qk~Ii~~c~aa-gkPvi~ 559 (631)
+..+|+.| .+.+.+...-+.+..+ | .|+|=| ..| +..++ .=++.-.+|+...+++ .+||++
T Consensus 91 ~~p~i~si~g~~~~~~~~~a~~~~~a----G~~D~iElN~~cP~~~~g--g~~~~--~~~~~~~eiv~~vr~~~~~pv~v 162 (301)
T PRK07259 91 DTPIIANVAGSTEEEYAEVAEKLSKA----PNVDAIELNISCPNVKHG--GMAFG--TDPELAYEVVKAVKEVVKVPVIV 162 (301)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHhcc----CCcCEEEEECCCCCCCCC--ccccc--cCHHHHHHHHHHHHHhcCCCEEE
Confidence 35577777 4555555555544433 5 688866 222 22222 1134555666666665 899987
Q ss_pred EechhhhhhhCCCCChhhHHhhh---hccccCcccc
Q 006783 560 ATQVLESLVKFGVPTRAEITDVA---SARRASCVML 592 (631)
Q Consensus 560 ATQvLESM~~~~~PtRAEvtDva---~a~gaD~vmL 592 (631)
=. .|+-.++.+++ ...|+|++.+
T Consensus 163 Kl----------~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 163 KL----------TPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred Ec----------CCCchhHHHHHHHHHHcCCCEEEE
Confidence 32 24433444444 3368998765
No 375
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=26.81 E-value=7.5e+02 Score=25.88 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=81.8
Q ss_pred CCChhcHHhHHHHH-h-cCCEEEEec-cCChhHHHHHHHHHHHhCCCCceEEEeecC-hhhhc--c---hHHHHHHhhcC
Q 006783 447 GLTTKDLMDLEFVA-S-HADMVGISF-VRDSCDIAMLRKELEKRKVQNLGVVLKIET-KSGFE--R---LPHILLEAMKS 517 (631)
Q Consensus 447 ~LTekD~~dl~f~~-~-~~D~V~~SF-V~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt-~~av~--N---L~eIl~~a~~~ 517 (631)
.+|.+++..+-..+ + ++|.|-++| .-++.++..++... +.+..+..+.+-.-. ..++. | ++..+.
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~----- 89 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAK-KLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLE----- 89 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHH-HcCCCCcEEEEEecccccCCCccchHHHHHHHh-----
Confidence 35667776665544 4 899998866 45788888776543 332223344433211 12222 1 222222
Q ss_pred CCCcEEEEe--cCCcc----cccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhh---hccccC
Q 006783 518 SNPLGVMIA--RGDLA----VECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVA---SARRAS 588 (631)
Q Consensus 518 ~~~DGImIa--RGDL~----veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva---~a~gaD 588 (631)
.|.+.|.|. -.|.- .-...++..+..++++..+++.|..|.+... .+.....-+...+.+++ ...|+|
T Consensus 90 ~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~---~~~d~~~~~~~~~~~~~~~~~~~g~~ 166 (273)
T cd07941 90 AGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAE---HFFDGYKANPEYALATLKAAAEAGAD 166 (273)
T ss_pred CCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEE---eccccCCCCHHHHHHHHHHHHhCCCC
Confidence 256777663 22321 1123456667778899999999998876211 11111122333334444 336999
Q ss_pred ccccc--CC-ccHHHHHHHHHHH
Q 006783 589 CVMLN--KG-KHVVEAVSTLDKI 608 (631)
Q Consensus 589 ~vmLs--kG-~ypveAV~~L~~I 608 (631)
.+.|. .| -.|.+.-+.+..+
T Consensus 167 ~i~l~DT~G~~~P~~v~~lv~~l 189 (273)
T cd07941 167 WLVLCDTNGGTLPHEIAEIVKEV 189 (273)
T ss_pred EEEEecCCCCCCHHHHHHHHHHH
Confidence 99886 55 4455544443333
No 376
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=26.68 E-value=2.3e+02 Score=24.38 Aligned_cols=50 Identities=22% Similarity=0.273 Sum_probs=26.8
Q ss_pred CcEEEe-CCe--EEEEEEEEeCCEEEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHH
Q 006783 395 EPIAFD-DGK--IWGLIQGASISEIVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFV 459 (631)
Q Consensus 395 d~I~iD-DGk--I~~~V~~v~~~~i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~ 459 (631)
-++|.| .|+ +.+...++.+..|.+. ..+|.+ | .+++..|++.|.+.++-.
T Consensus 12 ~RtWtD~tG~f~VeA~fv~~~dgkV~L~----k~nG~~------i-----~VP~~kLS~~D~~yve~~ 64 (70)
T PF03983_consen 12 TRTWTDRTGKFKVEAEFVGVNDGKVHLH----KTNGVK------I-----AVPLEKLSDEDQEYVEKI 64 (70)
T ss_dssp SEEEEBSSS--EEEEEEEEEETTEEEEE-----TTS-E------E-----EEETTSB-HHHHHHHHHH
T ss_pred ceEEEeCCCCEEEEEEEEEeeCCEEEEE----ecCCeE------E-----EeEhHHcCHHHHHHHHHH
Confidence 356665 443 5566666666655554 123332 3 345677889888776643
No 377
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=26.53 E-value=2.7e+02 Score=29.12 Aligned_cols=87 Identities=9% Similarity=-0.019 Sum_probs=56.0
Q ss_pred HHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEE
Q 006783 480 LRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 480 lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
+|+.|.+.. .-++.+..+-++.. -||+..+ |.|.|+|. +|-|.-.+..++ .++..|+..|.++++
T Consensus 3 lk~~l~~g~-~~~G~~~~~~sp~~----~e~~a~~----G~D~v~iD-----~EHg~~~~~~~~-~~~~a~~~~g~~~~V 67 (249)
T TIGR03239 3 FRQDLLARE-TLIGCWSALGNPIT----TEVLGLA----GFDWLLLD-----GEHAPNDVLTFI-PQLMALKGSASAPVV 67 (249)
T ss_pred HHHHHHcCC-ceEEEEEcCCCcHH----HHHHHhc----CCCEEEEe-----cccCCCCHHHHH-HHHHHHhhcCCCcEE
Confidence 455565422 33556666666544 4566655 78999995 466655666554 566789999999887
Q ss_pred EechhhhhhhCCCCChhhHHhhhhc--cccCccccc
Q 006783 560 ATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN 593 (631)
Q Consensus 560 ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs 593 (631)
.-|.++... +..+ .|+++||+-
T Consensus 68 ---------Rvp~~~~~~---i~r~LD~Ga~gIivP 91 (249)
T TIGR03239 68 ---------RPPWNEPVI---IKRLLDIGFYNFLIP 91 (249)
T ss_pred ---------ECCCCCHHH---HHHHhcCCCCEEEec
Confidence 334444433 4444 599999984
No 378
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=26.44 E-value=5.3e+02 Score=25.47 Aligned_cols=72 Identities=18% Similarity=0.087 Sum_probs=38.6
Q ss_pred cHHhHHHHHh-cCCEEEEeccC-ChhHH-HHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecC
Q 006783 452 DLMDLEFVAS-HADMVGISFVR-DSCDI-AMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARG 528 (631)
Q Consensus 452 D~~dl~f~~~-~~D~V~~SFV~-sa~Dv-~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRG 528 (631)
+.++++.+.+ ++|+|++=|.. |+..+ ...-..|.+.-...+.-++=+-+.. ++++.+++... ++|+|=+.-.
T Consensus 8 ~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~-~~~i~~ia~~~----~~d~Vqlhg~ 82 (203)
T cd00405 8 TLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNED-LEEILEIAEEL----GLDVVQLHGD 82 (203)
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCC-HHHHHHHHHhc----CCCEEEECCC
Confidence 5567888887 79999999864 55555 2222223222112122222232221 34444555443 6899988733
No 379
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=26.32 E-value=78 Score=33.17 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=56.4
Q ss_pred hhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCC-CCChhhHHh
Q 006783 502 SGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFG-VPTRAEITD 580 (631)
Q Consensus 502 ~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~-~PtRAEvtD 580 (631)
....+++++++.. .+|.|+|+ .+. ..-.+++..|-++||+|++ .+| .+|-+|...
T Consensus 54 ~~~~~~~~ll~~~----~iD~V~Ia-------tp~----~~H~e~~~~AL~aGkhVl~---------EKPla~t~~ea~~ 109 (342)
T COG0673 54 KAYTDLEELLADP----DIDAVYIA-------TPN----ALHAELALAALEAGKHVLC---------EKPLALTLEEAEE 109 (342)
T ss_pred cccCCHHHHhcCC----CCCEEEEc-------CCC----hhhHHHHHHHHhcCCEEEE---------cCCCCCCHHHHHH
Confidence 6888999999765 57999997 221 2344566888999999997 566 466777666
Q ss_pred hhhccccCcccccCC---ccHHHHHHHHHHHHHH
Q 006783 581 VASARRASCVMLNKG---KHVVEAVSTLDKILHI 611 (631)
Q Consensus 581 va~a~gaD~vmLskG---~ypveAV~~L~~Il~r 611 (631)
+..+...-.+.|..| .|- -+++.+.+++..
T Consensus 110 l~~~a~~~~~~l~v~~~~Rf~-p~~~~~k~li~~ 142 (342)
T COG0673 110 LVELARKAGVKLMVGFNRRFD-PAVQALKELIDS 142 (342)
T ss_pred HHHHHHHcCCceeeehhhhcC-HHHHHHHHHHhc
Confidence 665543225555522 222 367777777775
No 380
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=26.21 E-value=2.5e+02 Score=28.03 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCC
Q 006783 477 IAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVP 556 (631)
Q Consensus 477 v~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkP 556 (631)
++.+.+.|.+.+ .++.+-+.-++... +|+++++.. .|-|+.+-.. ...+..+-..|+++++|
T Consensus 77 a~~~~~~l~~~n-p~v~i~~~~~~i~~-~~~~~~~~~------~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip 138 (202)
T TIGR02356 77 VEVAAQRLRELN-SDIQVTALKERVTA-ENLELLINN------VDLVLDCTDN----------FATRYLINDACVALGTP 138 (202)
T ss_pred HHHHHHHHHHhC-CCCEEEEehhcCCH-HHHHHHHhC------CCEEEECCCC----------HHHHHHHHHHHHHcCCC
Confidence 445555666554 33433332222222 467777653 3888776432 24667788999999999
Q ss_pred EEEEe
Q 006783 557 VIWAT 561 (631)
Q Consensus 557 vi~AT 561 (631)
+|.+.
T Consensus 139 ~i~~~ 143 (202)
T TIGR02356 139 LISAA 143 (202)
T ss_pred EEEEE
Confidence 98753
No 381
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=26.16 E-value=2.5e+02 Score=32.83 Aligned_cols=122 Identities=12% Similarity=0.125 Sum_probs=78.0
Q ss_pred CCEEEEeccCChhHHHHHHHHHHHh----C--CCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcc-----
Q 006783 463 ADMVGISFVRDSCDIAMLRKELEKR----K--VQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLA----- 531 (631)
Q Consensus 463 ~D~V~~SFV~sa~Dv~~lr~~L~~~----~--~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~----- 531 (631)
-=|+-+|-++++.++.--.+.+... | ...+++...|||..|.-|++||+-+. |.+ +-|+=-||=|-.
T Consensus 204 gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyel-r~h-~~gLN~GrwDYifS~Ik 281 (526)
T PF01274_consen 204 GPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYEL-RDH-SVGLNCGRWDYIFSEIK 281 (526)
T ss_dssp SEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHT-TTT-EEEEEE-HHHHHHHHHH
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHH-Hhh-eeeeecCchhhhHHHHH
Confidence 5678889999999988777665421 2 13589999999999999999999875 433 455544433221
Q ss_pred ---------------cccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCCh--hhHHhhhhc----------
Q 006783 532 ---------------VECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTR--AEITDVASA---------- 584 (631)
Q Consensus 532 ---------------veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtR--AEvtDva~a---------- 584 (631)
+-+..+=|..+.+..+..|++.|...+ -.|+-. +|.+ .+.++.+++
T Consensus 282 ~~~~~~~~vlPdR~~v~m~~pfm~aY~~llv~tch~Rga~a~------gGmaa~-ip~~~d~~~~~~a~~~v~~dK~rE~ 354 (526)
T PF01274_consen 282 TFRNRPDFVLPDRKQVTMTQPFMRAYEDLLVRTCHRRGAHAM------GGMAAF-IPIGKDPWANPDAMAKVRADKEREA 354 (526)
T ss_dssp HTCCGCCBB---GGGGGCGSHHHHHHHHHHHHHHHHTT-HHH------TTCTTT-SEEEEEEHHBTTCHHHHHHHTHHHH
T ss_pred HhhhCCCccccccccccccCHHHHHHHHHHHHHHhhcCCccc------cCCccc-cCCCCChhhhHHHHHHHHHHHHHHH
Confidence 222234677888999999999996553 344432 5655 355544444
Q ss_pred -cccCccccc
Q 006783 585 -RRASCVMLN 593 (631)
Q Consensus 585 -~gaD~vmLs 593 (631)
.|+||.+..
T Consensus 355 ~~G~dg~WVa 364 (526)
T PF01274_consen 355 KAGFDGAWVA 364 (526)
T ss_dssp HTT-SEEEES
T ss_pred hcCCCccccc
Confidence 499999885
No 382
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=26.04 E-value=7.6e+02 Score=25.64 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=91.1
Q ss_pred HHHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccCh
Q 006783 457 EFVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGW 536 (631)
Q Consensus 457 ~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~ 536 (631)
+++..+++.+.+=+ +-.++..++-+.++++| -..++..|=+|+ |+.+...+.. .|-+.| ++||=||
T Consensus 82 ~~a~agas~~tfH~-E~~q~~~~lv~~ir~~G-mk~G~alkPgT~--Ve~~~~~~~~------~D~vLv----MtVePGF 147 (224)
T KOG3111|consen 82 QMAKAGASLFTFHY-EATQKPAELVEKIREKG-MKVGLALKPGTP--VEDLEPLAEH------VDMVLV----MTVEPGF 147 (224)
T ss_pred HHHhcCcceEEEEE-eeccCHHHHHHHHHHcC-CeeeEEeCCCCc--HHHHHHhhcc------ccEEEE----EEecCCC
Confidence 35666898877653 44455788888888888 458888898984 5556555543 488888 4788777
Q ss_pred ---hhHHHHHHHHHHHHHhcCCCEE-EEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHHHHHHH
Q 006783 537 ---ERLADMQEEILSICGAAHVPVI-WATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVSTLDKI 608 (631)
Q Consensus 537 ---e~l~~~Qk~Ii~~c~aagkPvi-~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~~L~~I 608 (631)
.=+.+...++-|+-+++..+.| +-.- -.|+- -|.+...||+++.-. .-.-|-++++.|++.
T Consensus 148 GGQkFme~mm~KV~~lR~kyp~l~ievDGG--------v~~~t---i~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~ 216 (224)
T KOG3111|consen 148 GGQKFMEDMMPKVEWLREKYPNLDIEVDGG--------VGPST---IDKAAEAGANMIVAGSAVFGAADPSDVISLLRNS 216 (224)
T ss_pred chhhhHHHHHHHHHHHHHhCCCceEEecCC--------cCcch---HHHHHHcCCCEEEecceeecCCCHHHHHHHHHHH
Confidence 3566677778788889999998 3110 02222 224444699988876 456689999999998
Q ss_pred HHHHh
Q 006783 609 LHINT 613 (631)
Q Consensus 609 l~r~e 613 (631)
+....
T Consensus 217 v~~a~ 221 (224)
T KOG3111|consen 217 VEKAA 221 (224)
T ss_pred Hhhhh
Confidence 87654
No 383
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=25.91 E-value=1.1e+02 Score=26.73 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=37.2
Q ss_pred CcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc-cccCcccccCC
Q 006783 520 PLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA-RRASCVMLNKG 595 (631)
Q Consensus 520 ~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a-~gaD~vmLskG 595 (631)
.--|+|| .|-+ +...+.+..+|+.+++|+++ ..|+.|+.-+.-. ++|-++++-.|
T Consensus 25 akLViiA-~Da~--------~~~~k~i~~~c~~~~Vpv~~------------~~t~~eLG~A~G~~v~aa~~~~~~~ 80 (82)
T PRK13601 25 VLQVYIA-KDAE--------EHVTKKIKELCEEKSIKIVY------------IDTMKELGVMCGIDVGAAAAADIIG 80 (82)
T ss_pred eeEEEEe-CCCC--------HHHHHHHHHHHHhCCCCEEE------------eCCHHHHHHHHCCccCeeeEEEeec
Confidence 4567776 3333 35889999999999999986 6677786654444 35555555433
No 384
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=25.91 E-value=5.7e+02 Score=24.16 Aligned_cols=118 Identities=18% Similarity=0.088 Sum_probs=59.5
Q ss_pred HHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcc---
Q 006783 456 LEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLA--- 531 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~--- 531 (631)
++.+.+ ++|+|-++.-. .....++.... ....+-+-+.|. +++.... ..|+|.|++++..=+
T Consensus 65 ~~~a~~~g~~~vh~~~~~--~~~~~~~~~~~----~~~~~g~~~~t~------~~~~~~~--~~g~d~i~~~~~~~~~~~ 130 (196)
T cd00564 65 VDLALAVGADGVHLGQDD--LPVAEARALLG----PDLIIGVSTHSL------EEALRAE--ELGADYVGFGPVFPTPTK 130 (196)
T ss_pred HHHHHHcCCCEEecCccc--CCHHHHHHHcC----CCCEEEeeCCCH------HHHHHHh--hcCCCEEEECCccCCCCC
Confidence 444555 78977666432 22333333321 123333333443 3333221 226799999743211
Q ss_pred ----cccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHH
Q 006783 532 ----VECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVS 603 (631)
Q Consensus 532 ----veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~ 603 (631)
...+++.+.+ .++..++||+.+. -.+...+..+.. .|+|++.+. .-+-|.++++
T Consensus 131 ~~~~~~~~~~~~~~-------~~~~~~~pv~a~G----------Gi~~~~i~~~~~-~Ga~~i~~g~~i~~~~~~~~~~~ 192 (196)
T cd00564 131 PGAGPPLGLELLRE-------IAELVEIPVVAIG----------GITPENAAEVLA-AGADGVAVISAITGADDPAAAAR 192 (196)
T ss_pred CCCCCCCCHHHHHH-------HHHhCCCCEEEEC----------CCCHHHHHHHHH-cCCCEEEEehHhhcCCCHHHHHH
Confidence 2233344333 2333679998764 334444444443 589988876 2344777766
Q ss_pred HH
Q 006783 604 TL 605 (631)
Q Consensus 604 ~L 605 (631)
.+
T Consensus 193 ~l 194 (196)
T cd00564 193 EL 194 (196)
T ss_pred HH
Confidence 54
No 385
>PHA02542 41 41 helicase; Provisional
Probab=25.61 E-value=3.2e+02 Score=31.29 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc-cccCccccc
Q 006783 536 WERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA-RRASCVMLN 593 (631)
Q Consensus 536 ~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a-~gaD~vmLs 593 (631)
...+.++-+.+-.+|+..++|||...|+=-+--+...|+-+.+.|-... .-||.||+-
T Consensus 326 ~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~dP~lsDLreSG~IEqdAD~vl~l 384 (473)
T PHA02542 326 YTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSDVDMSDTAESAGLPATADFMLAV 384 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEEeeCccccccCCCcchhcccccchHhhcCEEEEE
Confidence 3568888889999999999999999998766555555665443333333 468887753
No 386
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=25.50 E-value=4e+02 Score=28.08 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=57.8
Q ss_pred HHHHHhcCCEEEEecc--CChhHHHH-HH---HHHHHhCCCCceEEEee----cChhhhc--chHHHHHHhhcCCCCcEE
Q 006783 456 LEFVASHADMVGISFV--RDSCDIAM-LR---KELEKRKVQNLGVVLKI----ETKSGFE--RLPHILLEAMKSSNPLGV 523 (631)
Q Consensus 456 l~f~~~~~D~V~~SFV--~sa~Dv~~-lr---~~L~~~~~~~~~IiaKI----Et~~av~--NL~eIl~~a~~~~~~DGI 523 (631)
+.-+..++|||=++|- .+.++..+ ++ +.++... .+..+|+-. +...+++ .+++++..+ |.+|+
T Consensus 74 ~~~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~-~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~a----G~~gv 148 (235)
T PF04476_consen 74 LGAAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFD-PDKKVVAVGYADAQRVGSISPLDLPEIAAEA----GFDGV 148 (235)
T ss_pred HHHHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhC-CCcEEEEEEecchhhhcCCCHHHHHHHHHHc----CCCEE
Confidence 3344568999999886 44433332 22 2233332 344455443 3222343 456677666 78999
Q ss_pred EEecC-----CcccccChhhHHHHHHHHHHHHHhcCCCEEEEec
Q 006783 524 MIARG-----DLAVECGWERLADMQEEILSICGAAHVPVIWATQ 562 (631)
Q Consensus 524 mIaRG-----DL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQ 562 (631)
||.=. -|-=.++.+.+ .+.+..|+++|.-+.+|..
T Consensus 149 MlDTa~Kdg~~L~d~~~~~~L----~~Fv~~ar~~gL~~aLAGS 188 (235)
T PF04476_consen 149 MLDTADKDGGSLFDHLSEEEL----AEFVAQARAHGLMCALAGS 188 (235)
T ss_pred EEecccCCCCchhhcCCHHHH----HHHHHHHHHccchhhcccc
Confidence 99433 34444444444 3567889999999998863
No 387
>PRK05595 replicative DNA helicase; Provisional
Probab=25.24 E-value=4.8e+02 Score=29.33 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEechhhhhh--hCCCCChhhHHhhhhc-cccCccccc
Q 006783 536 WERLADMQEEILSICGAAHVPVIWATQVLESLV--KFGVPTRAEITDVASA-RRASCVMLN 593 (631)
Q Consensus 536 ~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~--~~~~PtRAEvtDva~a-~gaD~vmLs 593 (631)
...+.++-+.+=..|+..++||++.+|+=-.-. ....|+.+.+-|-... ..||.||+-
T Consensus 333 ~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l 393 (444)
T PRK05595 333 QQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFL 393 (444)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEE
Confidence 356788888888999999999999999833222 2346765555543333 689988875
No 388
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=25.08 E-value=3.8e+02 Score=30.61 Aligned_cols=85 Identities=15% Similarity=0.241 Sum_probs=49.8
Q ss_pred cCCEEEEeccCChhHHHHHHHHHHHhCCCC-------------ceEEEe------e--c------Ch-hhhcchHHHHHH
Q 006783 462 HADMVGISFVRDSCDIAMLRKELEKRKVQN-------------LGVVLK------I--E------TK-SGFERLPHILLE 513 (631)
Q Consensus 462 ~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~-------------~~IiaK------I--E------t~-~av~NL~eIl~~ 513 (631)
++....+++|-.-+.=+.++..|...+.+. +.|++. + | .. .=++++++.+.
T Consensus 64 Ga~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~~~~~~~~ll~~~~~~l~- 142 (467)
T COG2870 64 GANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLLRLDFEEKFPIEDENKLLEKIKNALK- 142 (467)
T ss_pred CCCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeecccceEEEecccccCcchhHHHHHHHHHHHhh-
Confidence 677777788777777777777776543110 111111 0 1 11 12244444443
Q ss_pred hhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEE
Q 006783 514 AMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 514 a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
+.|++++. +++---+..+ +.||.+|+++|+||.+
T Consensus 143 -----~~~~vVLS------DY~KG~L~~~-q~~I~~ar~~~~pVLv 176 (467)
T COG2870 143 -----SFDALVLS------DYAKGVLTNV-QKMIDLAREAGIPVLV 176 (467)
T ss_pred -----cCCEEEEe------ccccccchhH-HHHHHHHHHcCCcEEE
Confidence 34999995 3343344444 4677999999999997
No 389
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=24.93 E-value=2e+02 Score=28.56 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=39.1
Q ss_pred HhHHHHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHH
Q 006783 454 MDLEFVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLE 513 (631)
Q Consensus 454 ~dl~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~ 513 (631)
+.+.-++..+|+|..|.+-.-+.|+.+...|+.+. ++..++.-. .+.+|++..
T Consensus 49 ~~~~~aia~ADii~~smlF~ed~v~~l~~~L~~~r-~~~~a~i~~------~sapelm~l 101 (164)
T PF11965_consen 49 EECEAAIARADIIFGSMLFIEDHVRPLLPALEARR-DHCPAMIIF------ESAPELMRL 101 (164)
T ss_pred HHHHHHHHhCCEEEeehhhhHHHHHHHHHHHHHHH-ccCCEEEEE------cCHHHHHHH
Confidence 44555667899999999999999999999999764 344455444 455566554
No 390
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=24.83 E-value=1.7e+02 Score=32.93 Aligned_cols=138 Identities=16% Similarity=0.154 Sum_probs=69.2
Q ss_pred eCCeEEEEEEEEeCCEE---EEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHHHhcCCEEEEeccCChhH
Q 006783 400 DDGKIWGLIQGASISEI---VVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVASHADMVGISFVRDSCD 476 (631)
Q Consensus 400 DDGkI~~~V~~v~~~~i---~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~~~~D~V~~SFV~sa~D 476 (631)
-.|...+.|.++.+.++ ...... --.+| ..+|+-=|....++|.+..+ ||+==-.+..-
T Consensus 81 ~~G~~ql~v~~i~~~G~G~l~~~~~~---lk~~L-~~eGlfd~~~k~~lP~~p~~--------------i~vits~~~aa 142 (432)
T TIGR00237 81 PRGDYQIICFEMQPAGEGLLQLAYEQ---LKEKL-AAEGLFDQEYKKPLPHFPKR--------------VGVITSQTGAA 142 (432)
T ss_pred CCCcEEEEEEEeccCChHHHHHHHHH---HHHHH-HHCCCCCchhcCCCCCCCCE--------------EEEEeCCccHH
Confidence 36777777777665421 000000 00111 23455555556666665432 44433456666
Q ss_pred HHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHH---HhhcCCCCcEEEEecCCcccccChhhHHHHH-HHHHHHHHh
Q 006783 477 IAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILL---EAMKSSNPLGVMIARGDLAVECGWERLADMQ-EEILSICGA 552 (631)
Q Consensus 477 v~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~---~a~~~~~~DGImIaRGDL~veig~e~l~~~Q-k~Ii~~c~a 552 (631)
+..+...+.++. ....|+.-==+.+|-+.-++|+. .+-.....|.|+|+||==+. |+|...= +.+..+.-+
T Consensus 143 ~~D~~~~~~~r~-p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~----eDL~~Fn~e~~~rai~~ 217 (432)
T TIGR00237 143 LADILHILKRRD-PSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSL----EDLWSFNDEKVARAIFL 217 (432)
T ss_pred HHHHHHHHHhhC-CCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCH----HHhhhcCcHHHHHHHHc
Confidence 777777777664 22223221112233333333332 22112236999999994333 3444333 344555677
Q ss_pred cCCCEEEE
Q 006783 553 AHVPVIWA 560 (631)
Q Consensus 553 agkPvi~A 560 (631)
..+|||.|
T Consensus 218 ~~~Pvis~ 225 (432)
T TIGR00237 218 SKIPIISA 225 (432)
T ss_pred CCCCEEEe
Confidence 89999977
No 391
>TIGR00202 csrA carbon storage regulator (csrA). Modulates the expression of genes in the glycogen biosynthesis and gluconeogenesis pathways by accelerating the 5'-to-3' degradation of these transcripts through selective RNA binding. The N-terminal end of the sequence (AA 11-45) contains the KH motif which is characteristic of a set of RNA-binding proteins.
Probab=24.79 E-value=2.2e+02 Score=24.52 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=24.4
Q ss_pred cCCCCcEEEeCCeEEEEEEEEeCCEEEEEEE
Q 006783 391 VKPGEPIAFDDGKIWGLIQGASISEIVVSIT 421 (631)
Q Consensus 391 v~~Gd~I~iDDGkI~~~V~~v~~~~i~~~V~ 421 (631)
-++|+.|.|+| .|...|.++.++.+..=|.
T Consensus 6 Rk~gE~I~Igd-~I~I~Vl~i~g~~VrlGI~ 35 (69)
T TIGR00202 6 RKVNESIQIGD-DIEVKVLSVKGDQVKLGIE 35 (69)
T ss_pred ccCCCEEEeCC-CEEEEEEEEcCCeEEEEEE
Confidence 37899999998 5999999998887776553
No 392
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=24.77 E-value=1.7e+02 Score=30.21 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=10.0
Q ss_pred hhhhcccCCCCcEEE
Q 006783 385 SCLFDSVKPGEPIAF 399 (631)
Q Consensus 385 p~l~~~v~~Gd~I~i 399 (631)
+-+.++|++||.|+.
T Consensus 100 ~vfA~~V~~Gd~v~~ 114 (217)
T PF01079_consen 100 AVFASDVRVGDCVLV 114 (217)
T ss_dssp EEEGGG--TT-EEEE
T ss_pred eeehhhCCCCCEEEE
Confidence 356789999999999
No 393
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=24.74 E-value=7.5e+02 Score=26.76 Aligned_cols=106 Identities=19% Similarity=0.140 Sum_probs=64.4
Q ss_pred ccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHH
Q 006783 470 FVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSI 549 (631)
Q Consensus 470 FV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~ 549 (631)
=.++++||+++++.. ++.||++|-.-- +...+++.+ + |+|-| | +.+-.-+ + .+++..
T Consensus 50 R~~~~~~I~~Ik~~V------~iPVIGi~K~~~-~~Ea~~L~e-a----GvDiI-----D-aT~r~rP-~----~~~~~~ 106 (283)
T cd04727 50 RMADPKMIKEIMDAV------SIPVMAKVRIGH-FVEAQILEA-L----GVDMI-----D-ESEVLTP-A----DEEHHI 106 (283)
T ss_pred ecCCHHHHHHHHHhC------CCCeEEeeehhH-HHHHHHHHH-c----CCCEE-----e-ccCCCCc-H----HHHHHH
Confidence 345777777777654 578888775433 555555543 3 67877 4 3332212 2 444444
Q ss_pred HHh-cCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHh
Q 006783 550 CGA-AHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINT 613 (631)
Q Consensus 550 c~a-agkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e 613 (631)
.+. ++.|++. +.-|..| +-++ .|+|+|=-. +| +..|||+-+.+|-....
T Consensus 107 iK~~~~~l~MA-----------D~stleE---al~a~~~Gad~I~TTl~gyT~-~~~~~~~~~~~i~~~i~ 162 (283)
T cd04727 107 DKHKFKVPFVC-----------GARNLGE---ALRRISEGAAMIRTKGEAGTG-NVVEAVRHMRAVNGEIR 162 (283)
T ss_pred HHHHcCCcEEc-----------cCCCHHH---HHHHHHCCCCEEEecCCCCCC-cHHHHHHHHHHHHHHHH
Confidence 444 4788773 3444444 5455 589987654 44 78899999999887654
No 394
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=24.73 E-value=1.2e+02 Score=31.74 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=40.4
Q ss_pred HHHHHHhCCCEEEeec-CC-------CChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeeee
Q 006783 186 ISDILKAGASIIRINC-AH-------GNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLRT 240 (631)
Q Consensus 186 i~~Li~aGMdvaRINc-AH-------g~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIRt 240 (631)
.++++++|.++.=||+ |- +..++|.++..-|+.+.+..+ +.|..|..-|+.=-
T Consensus 29 a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~--~plsiDT~~~~vi~ 89 (257)
T TIGR01496 29 AERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPD--VPISVDTYRAEVAR 89 (257)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC--CeEEEeCCCHHHHH
Confidence 8889999999999984 22 224488999999998877666 45788998776533
No 395
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=24.42 E-value=9.4e+02 Score=26.16 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=66.7
Q ss_pred CCCChhcHHhHH--H------HHh-cCCEEEEeccC-------------Chh---------HHH---HHHHHHHHh-CCC
Q 006783 446 EGLTTKDLMDLE--F------VAS-HADMVGISFVR-------------DSC---------DIA---MLRKELEKR-KVQ 490 (631)
Q Consensus 446 p~LTekD~~dl~--f------~~~-~~D~V~~SFV~-------------sa~---------Dv~---~lr~~L~~~-~~~ 490 (631)
..+|..|++.+. | +.+ ++|.|-+.+.. ... ..+ ++-+.+++. | .
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg-~ 218 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIG-A 218 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhC-C
Confidence 469999998773 3 223 68999775433 111 122 222333332 3 3
Q ss_pred CceEEEeecChhhh------cchH---HHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHH-HHhcCCCEEEE
Q 006783 491 NLGVVLKIETKSGF------ERLP---HILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSI-CGAAHVPVIWA 560 (631)
Q Consensus 491 ~~~IiaKIEt~~av------~NL~---eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~-c~aagkPvi~A 560 (631)
+ .|..||-..+.+ ..++ +|+... ...|+|.|=|..|...-..+ ..+-..... .+..++|||..
T Consensus 219 d-~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l-~~~g~d~i~vs~g~~~~~~~-----~~~~~~~~~ik~~~~ipvi~~ 291 (338)
T cd02933 219 D-RVGIRLSPFGTFNDMGDSDPEATFSYLAKEL-NKRGLAYLHLVEPRVAGNPE-----DQPPDFLDFLRKAFKGPLIAA 291 (338)
T ss_pred C-ceEEEECccccCCCCCCCCCHHHHHHHHHHH-HHcCCcEEEEecCCCCCccc-----ccchHHHHHHHHHcCCCEEEE
Confidence 4 488898543211 0222 333222 22367999887775432221 112222222 23358999975
Q ss_pred echhhhhhhCCCCChhhHHhhhhccccCcccccC
Q 006783 561 TQVLESLVKFGVPTRAEITDVASARRASCVMLNK 594 (631)
Q Consensus 561 TQvLESM~~~~~PtRAEvtDva~a~gaD~vmLsk 594 (631)
.. + +.+++.++....++|.|++..
T Consensus 292 G~---------i-~~~~a~~~l~~g~~D~V~~gR 315 (338)
T cd02933 292 GG---------Y-DAESAEAALADGKADLVAFGR 315 (338)
T ss_pred CC---------C-CHHHHHHHHHcCCCCEEEeCH
Confidence 43 2 233333444445699999983
No 396
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.38 E-value=2.6e+02 Score=28.94 Aligned_cols=62 Identities=8% Similarity=0.129 Sum_probs=42.4
Q ss_pred CeEEEEecCCCCChH-H-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCC
Q 006783 170 TNHIMVTVGQEASES-E-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLA 234 (631)
Q Consensus 170 ~TkImvTlgp~aa~~-~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~ 234 (631)
+..+-.|++....+. + ++++++.|-+.+.|-++..+++ +.++.|++..+.+|..+.+++|--
T Consensus 72 ~v~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~---~d~~~v~~vr~~~g~~~~l~vDaN 135 (263)
T cd03320 72 RIPVNALLPAGDAAALGEAKAAYGGGYRTVKLKVGATSFE---EDLARLRALREALPADAKLRLDAN 135 (263)
T ss_pred CcceeEEecCCCHHHHHHHHHHHhCCCCEEEEEECCCChH---HHHHHHHHHHHHcCCCCeEEEeCC
Confidence 445556676543222 2 8888899999999998766654 445555555566787888999853
No 397
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=24.28 E-value=8.4e+02 Score=25.57 Aligned_cols=157 Identities=8% Similarity=0.073 Sum_probs=82.8
Q ss_pred CceeecCCCcccCCCCChhcHHhHHHHH-h-cCCEEEEecc-CChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHH
Q 006783 433 GKSINIPKSNIHFEGLTTKDLMDLEFVA-S-HADMVGISFV-RDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPH 509 (631)
Q Consensus 433 ~KGINlP~~~l~lp~LTekD~~dl~f~~-~-~~D~V~~SFV-~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~e 509 (631)
+-|...|+.. +|..++..|--.+ + ++|.|-++|- .++.+.+.++. +.+.+. ...+.+- +.-|.++
T Consensus 9 RDG~Q~~~~~-----~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~-l~~~~~-~~~v~~~-----~r~~~~d 76 (262)
T cd07948 9 REGEQFANAF-----FDTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEA-IAKLGL-KAKILTH-----IRCHMDD 76 (262)
T ss_pred CCcCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH-HHhCCC-CCcEEEE-----ecCCHHH
Confidence 3445555543 4556665555434 4 8999988654 34444444443 444432 2333332 2334443
Q ss_pred HHHHhhcCCCCcEEEEe--cCCcc----cccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhh-
Q 006783 510 ILLEAMKSSNPLGVMIA--RGDLA----VECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVA- 582 (631)
Q Consensus 510 Il~~a~~~~~~DGImIa--RGDL~----veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva- 582 (631)
|-... ..|+|.|.|. =.|.- .-...++..+..++++..+++.|..|.+.-. -.-.++ ...+.+.+
T Consensus 77 i~~a~--~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e---da~r~~---~~~l~~~~~ 148 (262)
T cd07948 77 ARIAV--ETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE---DSFRSD---LVDLLRVYR 148 (262)
T ss_pred HHHHH--HcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE---eeCCCC---HHHHHHHHH
Confidence 32221 1256776662 12211 1133467777788889999999988876431 111122 33344433
Q ss_pred --hccccCccccc--CC-ccHHHHHHHHHHHH
Q 006783 583 --SARRASCVMLN--KG-KHVVEAVSTLDKIL 609 (631)
Q Consensus 583 --~a~gaD~vmLs--kG-~ypveAV~~L~~Il 609 (631)
+..|+|.+.|. .| -+|-+.-+++..|-
T Consensus 149 ~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~ 180 (262)
T cd07948 149 AVDKLGVNRVGIADTVGIATPRQVYELVRTLR 180 (262)
T ss_pred HHHHcCCCEEEECCcCCCCCHHHHHHHHHHHH
Confidence 44699998886 44 56666555555553
No 398
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=24.28 E-value=1.8e+02 Score=27.32 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=31.7
Q ss_pred CcEEEE--ecCCcccccChhhHHHHHHHHHHHHHhc--CCCEEEEe
Q 006783 520 PLGVMI--ARGDLAVECGWERLADMQEEILSICGAA--HVPVIWAT 561 (631)
Q Consensus 520 ~DGImI--aRGDL~veig~e~l~~~Qk~Ii~~c~aa--gkPvi~AT 561 (631)
+|-|+| |=-|+....+.++..+-.++++..++++ +.++++.+
T Consensus 51 p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~~~~~iil~~ 96 (171)
T cd04502 51 PRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKLPDTPIAIIS 96 (171)
T ss_pred CCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEE
Confidence 466555 5558877777888999999999999887 46677655
No 399
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=24.23 E-value=2.5e+02 Score=25.81 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=26.5
Q ss_pred CCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEE
Q 006783 519 NPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
|+-|+.|.-|..--+++ ++++..|++++-|+|.
T Consensus 72 ~~agL~i~~~~~~~~iP--------~~~i~~A~~~~lPli~ 104 (123)
T PF07905_consen 72 GAAGLGIKTGRYLDEIP--------EEIIELADELGLPLIE 104 (123)
T ss_pred CCeEEEEeccCccccCC--------HHHHHHHHHcCCCEEE
Confidence 56789998775444554 7899999999999996
No 400
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=24.23 E-value=1.5e+02 Score=29.26 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCceE-EEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCC
Q 006783 477 IAMLRKELEKRKVQNLGV-VLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHV 555 (631)
Q Consensus 477 v~~lr~~L~~~~~~~~~I-iaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagk 555 (631)
..-+++.+++.|..-..+ -+.-...+-.+.++.++.. ++|||++...|-..- ..++..|.++|+
T Consensus 17 ~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~-----~~d~Iiv~~~~~~~~----------~~~l~~~~~~gI 81 (257)
T PF13407_consen 17 IKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQ-----GVDGIIVSPVDPDSL----------APFLEKAKAAGI 81 (257)
T ss_dssp HHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHT-----TESEEEEESSSTTTT----------HHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHh-----cCCEEEecCCCHHHH----------HHHHHHHhhcCc
Q ss_pred CEEE
Q 006783 556 PVIW 559 (631)
Q Consensus 556 Pvi~ 559 (631)
||+.
T Consensus 82 pvv~ 85 (257)
T PF13407_consen 82 PVVT 85 (257)
T ss_dssp EEEE
T ss_pred eEEE
No 401
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=24.20 E-value=1.3e+02 Score=30.71 Aligned_cols=63 Identities=24% Similarity=0.392 Sum_probs=35.4
Q ss_pred cchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHh-cCCCEEEEechhhhhhhCCCCChhhHHhhhh
Q 006783 505 ERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGA-AHVPVIWATQVLESLVKFGVPTRAEITDVAS 583 (631)
Q Consensus 505 ~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~a-agkPvi~ATQvLESM~~~~~PtRAEvtDva~ 583 (631)
+++.+|+... ..+|.|+|||+ |=.++ ..+++.+ ++..+++ ..+||++ .|+ +...
T Consensus 11 e~~~~ia~~v-~~~gtDaI~VG-GS~gv--t~~~~~~----~v~~ik~~~~lPvil------------fp~-----~~~~ 65 (205)
T TIGR01769 11 DEIEKIAKNA-KDAGTDAIMVG-GSLGI--VESNLDQ----TVKKIKKITNLPVIL------------FPG-----NVNG 65 (205)
T ss_pred HHHHHHHHHH-HhcCCCEEEEc-CcCCC--CHHHHHH----HHHHHHhhcCCCEEE------------ECC-----Cccc
Confidence 4555544322 12378999998 33333 2344433 3444566 5799997 333 3333
Q ss_pred c-cccCcccc
Q 006783 584 A-RRASCVML 592 (631)
Q Consensus 584 a-~gaD~vmL 592 (631)
. .+||+++.
T Consensus 66 i~~~aD~~~~ 75 (205)
T TIGR01769 66 LSRYADAVFF 75 (205)
T ss_pred cCcCCCEEEE
Confidence 3 47998875
No 402
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=24.19 E-value=6e+02 Score=28.10 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=38.1
Q ss_pred HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCc
Q 006783 186 ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMP 226 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~ 226 (631)
+++++++|+.++-+.+-+.+.....++...++...+.+|.+
T Consensus 163 l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~~~ 203 (347)
T PRK02615 163 VEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYGAL 203 (347)
T ss_pred HHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 99999999999999999999999999999999999888754
No 403
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=24.11 E-value=2.8e+02 Score=28.64 Aligned_cols=67 Identities=13% Similarity=0.211 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCC
Q 006783 477 IAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVP 556 (631)
Q Consensus 477 v~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkP 556 (631)
++.+++.|.+.+ .++.|.+--+.... +|+++++... |-|+-+=.+ ++....+-..|.++++|
T Consensus 80 a~~a~~~l~~in-p~v~i~~~~~~i~~-~~~~~~~~~~------DlVvd~~D~----------~~~r~~ln~~~~~~~ip 141 (240)
T TIGR02355 80 VESAKDALTQIN-PHIAINPINAKLDD-AELAALIAEH------DIVVDCTDN----------VEVRNQLNRQCFAAKVP 141 (240)
T ss_pred HHHHHHHHHHHC-CCcEEEEEeccCCH-HHHHHHhhcC------CEEEEcCCC----------HHHHHHHHHHHHHcCCC
Confidence 455566676665 45555443332222 4677776533 766665322 23567778999999999
Q ss_pred EEEEe
Q 006783 557 VIWAT 561 (631)
Q Consensus 557 vi~AT 561 (631)
+|.+.
T Consensus 142 ~v~~~ 146 (240)
T TIGR02355 142 LVSGA 146 (240)
T ss_pred EEEEE
Confidence 99864
No 404
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=23.97 E-value=1.4e+02 Score=31.06 Aligned_cols=51 Identities=16% Similarity=0.330 Sum_probs=33.7
Q ss_pred CCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhc-cccCccccc
Q 006783 519 NPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASA-RRASCVMLN 593 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a-~gaD~vmLs 593 (631)
|.|+|||| |=++++ .+.-.+++..+++..+|||. .|+ +.... -+||++++.
T Consensus 32 gtdai~vG-GS~~vt------~~~~~~~v~~ik~~~lPvil------------fp~-----~~~~i~~~aDa~l~~ 83 (232)
T PRK04169 32 GTDAIIVG-GSDGVT------EENVDELVKAIKEYDLPVIL------------FPG-----NIEGISPGADAYLFP 83 (232)
T ss_pred CCCEEEEc-CCCccc------hHHHHHHHHHHhcCCCCEEE------------eCC-----CccccCcCCCEEEEE
Confidence 78999998 555555 23344556666778899996 343 33344 479988763
No 405
>PRK05636 replicative DNA helicase; Provisional
Probab=23.97 E-value=4.2e+02 Score=30.64 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEechhhhhhh--CCCCChhhHHhhhhc-cccCccccc
Q 006783 537 ERLADMQEEILSICGAAHVPVIWATQVLESLVK--FGVPTRAEITDVASA-RRASCVMLN 593 (631)
Q Consensus 537 e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~--~~~PtRAEvtDva~a-~gaD~vmLs 593 (631)
..+.++-+.+=.+|+..++|||+.+|+=-.--+ ...|+.+.+.+-... .-||.||+-
T Consensus 398 ~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~vl~l 457 (505)
T PRK05636 398 QEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLL 457 (505)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhcccccccCCEEEEE
Confidence 467888888999999999999999998766443 235665444443333 689988875
No 406
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=23.93 E-value=1.9e+02 Score=30.80 Aligned_cols=90 Identities=10% Similarity=0.163 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCC
Q 006783 476 DIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHV 555 (631)
Q Consensus 476 Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagk 555 (631)
-++.+++.+.+.+ .+..|.+ |+..---+|+++++.. +.|-|+.+=+++ .....+...|+++++
T Consensus 85 Kve~~~~rl~~IN-P~~~V~~-i~~~i~~e~~~~ll~~-----~~D~VIdaiD~~----------~~k~~L~~~c~~~~i 147 (268)
T PRK15116 85 KAEVMAERIRQIN-PECRVTV-VDDFITPDNVAEYMSA-----GFSYVIDAIDSV----------RPKAALIAYCRRNKI 147 (268)
T ss_pred HHHHHHHHHHhHC-CCcEEEE-EecccChhhHHHHhcC-----CCCEEEEcCCCH----------HHHHHHHHHHHHcCC
Confidence 4556666676665 3443332 3322223567777632 248777764433 234568899999999
Q ss_pred CEEEEechhhhhhhCCCCChhhHHhhhhccc
Q 006783 556 PVIWATQVLESLVKFGVPTRAEITDVASARR 586 (631)
Q Consensus 556 Pvi~ATQvLESM~~~~~PtRAEvtDva~a~g 586 (631)
|+|.+. .......||+-+++|++...+
T Consensus 148 p~I~~g----Gag~k~dp~~~~~~di~~t~~ 174 (268)
T PRK15116 148 PLVTTG----GAGGQIDPTQIQVVDLAKTIQ 174 (268)
T ss_pred CEEEEC----CcccCCCCCeEEEEeeecccC
Confidence 999764 344677999999999988754
No 407
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=23.91 E-value=1.5e+02 Score=33.62 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=42.9
Q ss_pred hHHHHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecC------hhhhcchHHHHHHh--hcCCCCcEEEEe
Q 006783 455 DLEFVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIET------KSGFERLPHILLEA--MKSSNPLGVMIA 526 (631)
Q Consensus 455 dl~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt------~~av~NL~eIl~~a--~~~~~~DGImIa 526 (631)
|.+-|+++||||..+|=-..-+-...-..+..+ -+|+.+ || ..|++|++.|...+ |+...+|+++|-
T Consensus 67 dr~eAl~gADfVi~~irvGg~~~r~~De~Ip~k----yGi~gq-ET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin 141 (437)
T cd05298 67 DPEEAFTDADFVFAQIRVGGYAMREQDEKIPLK----HGVVGQ-ETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILN 141 (437)
T ss_pred CHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHH----cCccee-cCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEE
Confidence 457788999999999854443333333333322 236666 99 56788887766443 455568999983
No 408
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=23.78 E-value=4.1e+02 Score=28.01 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=6.5
Q ss_pred HHHHHHHhcCCCEE
Q 006783 545 EILSICGAAHVPVI 558 (631)
Q Consensus 545 ~Ii~~c~aagkPvi 558 (631)
+.|+.+.++|+||+
T Consensus 118 ~~I~al~~agipV~ 131 (254)
T cd06557 118 ETIRALVDAGIPVM 131 (254)
T ss_pred HHHHHHHHcCCCee
Confidence 33444445555544
No 409
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=23.77 E-value=7.4e+02 Score=24.74 Aligned_cols=113 Identities=13% Similarity=0.094 Sum_probs=58.3
Q ss_pred cHHhHHHHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEE---e-ecChh-----hhcchHHHHHHhhcCCCCcE
Q 006783 452 DLMDLEFVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVL---K-IETKS-----GFERLPHILLEAMKSSNPLG 522 (631)
Q Consensus 452 D~~dl~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~Iia---K-IEt~~-----av~NL~eIl~~a~~~~~~DG 522 (631)
+...+..++...-.-++| +.+.++++.+++. .++.+++ | .+..+ -++.++.. ..+ |.|.
T Consensus 28 ~i~~~a~~~~~~G~~~~~-~~~~~~~~~i~~~------~~iPil~~~~~~~~~~~~~ig~~~~~~~~a-~~a----Gad~ 95 (219)
T cd04729 28 IMAAMALAAVQGGAVGIR-ANGVEDIRAIRAR------VDLPIIGLIKRDYPDSEVYITPTIEEVDAL-AAA----GADI 95 (219)
T ss_pred HHHHHHHHHHHCCCeEEE-cCCHHHHHHHHHh------CCCCEEEEEecCCCCCCceeCCCHHHHHHH-HHc----CCCE
Confidence 444454444333334566 5888888888764 1344543 2 11111 11233332 333 7798
Q ss_pred EEEecCCcccccChhhHHHHHHHHHHHHHhcC-CCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 523 VMIARGDLAVECGWERLADMQEEILSICGAAH-VPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 523 ImIaRGDL~veig~e~l~~~Qk~Ii~~c~aag-kPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
|.+.-.++.. +.. +.-++++..+++++ +|+++. ..|..|+ ..+...|+|.+..+
T Consensus 96 I~~~~~~~~~--p~~---~~~~~~i~~~~~~g~~~iiv~-----------v~t~~ea-~~a~~~G~d~i~~~ 150 (219)
T cd04729 96 IALDATDRPR--PDG---ETLAELIKRIHEEYNCLLMAD-----------ISTLEEA-LNAAKLGFDIIGTT 150 (219)
T ss_pred EEEeCCCCCC--CCC---cCHHHHHHHHHHHhCCeEEEE-----------CCCHHHH-HHHHHcCCCEEEcc
Confidence 7775333321 110 13346777777777 888763 3444443 23334699988764
No 410
>COG4873 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.64 E-value=1.3e+02 Score=25.77 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=27.4
Q ss_pred hcccCCCCcEEEeCCeEEEEEEEEeCCEEEEEEE
Q 006783 388 FDSVKPGEPIAFDDGKIWGLIQGASISEIVVSIT 421 (631)
Q Consensus 388 ~~~v~~Gd~I~iDDGkI~~~V~~v~~~~i~~~V~ 421 (631)
....++|+.|-|-||. .++|+++.++.+.+..|
T Consensus 21 m~~a~vgniief~dgl-~g~vek~nensvivdlt 53 (81)
T COG4873 21 MKIAKVGNIIEFKDGL-TGVVEKVNENSVIVDLT 53 (81)
T ss_pred eeeeeccceEEEcccc-eeeeeeecCCcEEEEEE
Confidence 4556899999999995 57899999998887766
No 411
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.40 E-value=7e+02 Score=26.15 Aligned_cols=38 Identities=11% Similarity=-0.102 Sum_probs=21.8
Q ss_pred CChhhHHhhhhc---cccCcccccC----C-ccHHHHHHHHHHHHH
Q 006783 573 PTRAEITDVASA---RRASCVMLNK----G-KHVVEAVSTLDKILH 610 (631)
Q Consensus 573 PtRAEvtDva~a---~gaD~vmLsk----G-~ypveAV~~L~~Il~ 610 (631)
.+-.|..+.+.. .|+|++|+.- . +-+-+-++....|+.
T Consensus 75 ~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~ 120 (279)
T cd00953 75 LNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS 120 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh
Confidence 444455554444 6999999862 1 123344466666666
No 412
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=23.37 E-value=2.9e+02 Score=25.34 Aligned_cols=40 Identities=25% Similarity=0.171 Sum_probs=26.0
Q ss_pred cchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEe
Q 006783 505 ERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWAT 561 (631)
Q Consensus 505 ~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~AT 561 (631)
+++++++..+ |.++- +. .|..-...++.|.++|+|+++.|
T Consensus 59 ~~l~~~~~~~------DVvID--------fT---~p~~~~~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 59 DDLEELLEEA------DVVID--------FT---NPDAVYDNLEYALKHGVPLVIGT 98 (124)
T ss_dssp S-HHHHTTH-------SEEEE--------ES----HHHHHHHHHHHHHHT-EEEEE-
T ss_pred hhHHHhcccC------CEEEE--------cC---ChHHhHHHHHHHHhCCCCEEEEC
Confidence 5677776543 64432 33 66777889999999999999988
No 413
>PHA02545 45 sliding clamp; Provisional
Probab=23.24 E-value=2.6e+02 Score=29.21 Aligned_cols=71 Identities=23% Similarity=0.312 Sum_probs=45.2
Q ss_pred CCCCcEEEeC-CeEEEEEEEEeCCEEEEEEEecCCCCceecCCceeecCCCcccCCCCChhcHHhHHHHHh--cCCEEEE
Q 006783 392 KPGEPIAFDD-GKIWGLIQGASISEIVVSITHAGPRGTKLGSGKSINIPKSNIHFEGLTTKDLMDLEFVAS--HADMVGI 468 (631)
Q Consensus 392 ~~Gd~I~iDD-GkI~~~V~~v~~~~i~~~V~~a~~~Gg~L~s~KGINlP~~~l~lp~LTekD~~dl~f~~~--~~D~V~~ 468 (631)
.-|-.|-+|. |.|. +.+++-.++--.+ .....+.++|-|.||..++.. .|+..|++.|..+.. +.|-+++
T Consensus 68 ~~~aei~~~~~~~i~-----i~~~r~ki~~~~a-d~~~Iv~P~k~i~~P~~dv~f-~L~aedl~ql~kas~~l~l~dl~~ 140 (223)
T PHA02545 68 GDDAEITFDEDGNIV-----IRGGRSKIKYPYA-DPSTIVKPKKRVTFPVADVEF-ELKAEDLQQLLKASRVLGLDDLAI 140 (223)
T ss_pred CCCCeeEEccCceEE-----ecCCceEEEEecC-CCceEecCCcccCCCCccEEE-EEcHHHHHHHHHHHHhcCCCeEEE
Confidence 3455566663 4442 2333333333322 345667899999999999886 689999999988775 4555555
Q ss_pred e
Q 006783 469 S 469 (631)
Q Consensus 469 S 469 (631)
.
T Consensus 141 ~ 141 (223)
T PHA02545 141 T 141 (223)
T ss_pred E
Confidence 3
No 414
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=23.22 E-value=7e+02 Score=26.68 Aligned_cols=95 Identities=22% Similarity=0.263 Sum_probs=53.2
Q ss_pred hhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhc--C-CCEEEEechhhhhhhCCCCChhhH
Q 006783 502 SGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAA--H-VPVIWATQVLESLVKFGVPTRAEI 578 (631)
Q Consensus 502 ~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aa--g-kPvi~ATQvLESM~~~~~PtRAEv 578 (631)
+|++.+-+-+... |+|||+++ |= +-|...-...| .+++++.|.++ | +|||.-| +..+-.|.
T Consensus 25 ~a~~~lv~~li~~----Gv~gi~~~-Gt-tGE~~~Ls~eE-r~~v~~~~v~~~~grvpviaG~---------g~~~t~ea 88 (299)
T COG0329 25 EALRRLVEFLIAA----GVDGLVVL-GT-TGESPTLTLEE-RKEVLEAVVEAVGGRVPVIAGV---------GSNSTAEA 88 (299)
T ss_pred HHHHHHHHHHHHc----CCCEEEEC-CC-CccchhcCHHH-HHHHHHHHHHHHCCCCcEEEec---------CCCcHHHH
Confidence 3444444433333 78999995 21 11222212222 23444554443 2 6788755 45555555
Q ss_pred Hhhhhc---cccCccccc----CCccHHHHHHHHHHHHHHH
Q 006783 579 TDVASA---RRASCVMLN----KGKHVVEAVSTLDKILHIN 612 (631)
Q Consensus 579 tDva~a---~gaD~vmLs----kG~ypveAV~~L~~Il~r~ 612 (631)
-..+.. .|+|++|+. ..+..-+..+....|+...
T Consensus 89 i~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~ 129 (299)
T COG0329 89 IELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAV 129 (299)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhc
Confidence 554443 699999996 3444777778888887765
No 415
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=23.18 E-value=3.2e+02 Score=26.71 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=13.2
Q ss_pred cchHHHHHHhhcCCCCcEEEEecCC
Q 006783 505 ERLPHILLEAMKSSNPLGVMIARGD 529 (631)
Q Consensus 505 ~NL~eIl~~a~~~~~~DGImIaRGD 529 (631)
+|+.+++.. |.|||.++++=
T Consensus 172 ~~i~~~~~~-----Ga~gv~~gs~i 191 (212)
T PRK00043 172 ENAPEVLEA-----GADGVAVVSAI 191 (212)
T ss_pred HHHHHHHHc-----CCCEEEEeHHh
Confidence 566666643 57888887653
No 416
>COG2225 AceB Malate synthase [Energy production and conversion]
Probab=23.17 E-value=1.9e+02 Score=33.77 Aligned_cols=99 Identities=11% Similarity=0.068 Sum_probs=69.5
Q ss_pred CEEEEeccCChhHHHHHHHHHHHh----C--CCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCccccc---
Q 006783 464 DMVGISFVRDSCDIAMLRKELEKR----K--VQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVEC--- 534 (631)
Q Consensus 464 D~V~~SFV~sa~Dv~~lr~~L~~~----~--~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~vei--- 534 (631)
=|+-++-.++++++.-.-+.+... | ...+++-..|||..+.-|+++|+... +. .+-|+=-||=|-..+.
T Consensus 220 ~YfylPKm~~p~Ea~f~ndvf~rvEd~LGLprgTiK~~vl~Ee~~a~~~m~eii~~~-re-r~v~lN~GrwDyigs~Ik~ 297 (545)
T COG2225 220 PYFYLPKMEGPEEAAFWNDVFSRVEDTLGLPRGTIKATLLIEERRATLNLDEILYAL-RD-RVVGLNTGRWDYIGSEIKT 297 (545)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCceeEeeehhhhhhhhhHHHHHHHH-Hh-hhccccccchhhhhhHHHH
Confidence 578889999999988777766532 2 13588999999999999999999887 22 2344444554433221
Q ss_pred ---------------ChhhHHHHHHHHHHHHHhcCCCEEEEechh
Q 006783 535 ---------------GWERLADMQEEILSICGAAHVPVIWATQVL 564 (631)
Q Consensus 535 ---------------g~e~l~~~Qk~Ii~~c~aagkPvi~ATQvL 564 (631)
..+-+..+++..+..|.++|-+.+=-.|..
T Consensus 298 ~~~~~~~p~R~~~tm~~p~m~AY~~~nv~~c~~~G~~a~Ggmaa~ 342 (545)
T COG2225 298 LMEDAVPPDRKGVTMTSPWMGAYEKLNVDTCHKRGAFAMGGMAAG 342 (545)
T ss_pred hhhhcCCCChhhhhhcCHHHHHHHHHhHHHHHhcCCcccccchhc
Confidence 114678889999999999999665444433
No 417
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=23.11 E-value=1.6e+02 Score=29.56 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=33.8
Q ss_pred HHHHHHhCCCEEEeecCCCC-----------hHHHHHHHHHHHHHHhhcCCceEEEecCCCC
Q 006783 186 ISDILKAGASIIRINCAHGN-----------PSIWSEIIRRVKTSSQMLEMPCQILMDLAGP 236 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg~-----------~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GP 236 (631)
+..|-..|+|+.||.+.... ...|.++-+.|+.+. +.| +.|++|+-++
T Consensus 27 ~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~-~~g--i~vild~h~~ 85 (281)
T PF00150_consen 27 FDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQ-AYG--IYVILDLHNA 85 (281)
T ss_dssp HHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHH-HTT---EEEEEEEES
T ss_pred HHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHH-hCC--CeEEEEeccC
Confidence 99999999999999999622 235555555555553 345 6778898765
No 418
>PLN02591 tryptophan synthase
Probab=22.98 E-value=1.2e+02 Score=31.76 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=36.0
Q ss_pred hhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEE
Q 006783 501 KSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWA 560 (631)
Q Consensus 501 ~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~A 560 (631)
.-|++++-+-++.+ |+||++|. || ++ +-.+++...|+++|...|+.
T Consensus 92 ~~G~~~F~~~~~~a----Gv~Gviip--DL----P~----ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 92 KRGIDKFMATIKEA----GVHGLVVP--DL----PL----EETEALRAEAAKNGIELVLL 137 (250)
T ss_pred HhHHHHHHHHHHHc----CCCEEEeC--CC----CH----HHHHHHHHHHHHcCCeEEEE
Confidence 45888888888777 89999997 44 44 35567889999999988863
No 419
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.96 E-value=3e+02 Score=27.09 Aligned_cols=14 Identities=7% Similarity=0.195 Sum_probs=7.1
Q ss_pred HHHHHhcCCCEEEE
Q 006783 547 LSICGAAHVPVIWA 560 (631)
Q Consensus 547 i~~c~aagkPvi~A 560 (631)
+..+.++|+|+++.
T Consensus 76 ~~~~~~~~ipvV~~ 89 (270)
T cd06294 76 IDYLKEEKFPFVVI 89 (270)
T ss_pred HHHHHhcCCCEEEE
Confidence 33445556665543
No 420
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=22.83 E-value=3.3e+02 Score=25.83 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=35.5
Q ss_pred HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCce
Q 006783 186 ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPC 227 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~ 227 (631)
+++++++|++.+-|..-..++..+.+.++.+++..+.+|.++
T Consensus 18 l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l 59 (196)
T cd00564 18 VEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPL 59 (196)
T ss_pred HHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeE
Confidence 999999999999999988888889899999988766556443
No 421
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.75 E-value=2.4e+02 Score=24.95 Aligned_cols=68 Identities=24% Similarity=0.282 Sum_probs=41.0
Q ss_pred HHHHh-cCCEEEEec--cCChhHHHHHHHHHHHhCCCCceEEE-eecChhhhcchHHHHHH-hhcCCCCcEEEEecCCcc
Q 006783 457 EFVAS-HADMVGISF--VRDSCDIAMLRKELEKRKVQNLGVVL-KIETKSGFERLPHILLE-AMKSSNPLGVMIARGDLA 531 (631)
Q Consensus 457 ~f~~~-~~D~V~~SF--V~sa~Dv~~lr~~L~~~~~~~~~Iia-KIEt~~av~NL~eIl~~-a~~~~~~DGImIaRGDL~ 531 (631)
+.+.+ ++|+|++|. ..+...+.++-+.+++.+ .++.|++ =.. +-.+-++++.. . +.|.++++-|+.+
T Consensus 45 ~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~-p~~~iv~GG~~---~t~~~~~~l~~~~----~~D~vv~GegE~~ 116 (121)
T PF02310_consen 45 EALRAERPDVVGISVSMTPNLPEAKRLARAIKERN-PNIPIVVGGPH---ATADPEEILREYP----GIDYVVRGEGEEA 116 (121)
T ss_dssp HHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTC-TTSEEEEEESS---SGHHHHHHHHHHH----TSEEEEEETTSSH
T ss_pred HHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcC-CCCEEEEECCc---hhcChHHHhccCc----CcceecCCChHHh
Confidence 44555 699999997 445556666666665554 4444443 222 11223445543 4 6799999999865
Q ss_pred c
Q 006783 532 V 532 (631)
Q Consensus 532 v 532 (631)
+
T Consensus 117 ~ 117 (121)
T PF02310_consen 117 F 117 (121)
T ss_dssp H
T ss_pred h
Confidence 4
No 422
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=22.66 E-value=71 Score=35.11 Aligned_cols=44 Identities=18% Similarity=0.347 Sum_probs=30.8
Q ss_pred CCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhh
Q 006783 519 NPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLV 568 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~ 568 (631)
+.+||+|+ -+|.-.++...-+.+..|.+.|+||+++||.....+
T Consensus 262 g~~GlVl~------g~G~Gn~p~~~~~al~~a~~~GipVV~~Sr~~~G~v 305 (349)
T TIGR00520 262 GAKGIVLA------GVGNGSLSAAGLKVNETAAKLGVPIVRSSRVPDGMV 305 (349)
T ss_pred CCCEEEEE------eECCCCCCHHHHHHHHHHHHCCCEEEEEccCCCCcc
Confidence 46899995 333333433455567778889999999999876554
No 423
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=22.63 E-value=7.1e+02 Score=24.10 Aligned_cols=129 Identities=13% Similarity=0.090 Sum_probs=63.1
Q ss_pred hHHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCccc-
Q 006783 455 DLEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAV- 532 (631)
Q Consensus 455 dl~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~v- 532 (631)
.++.+.+ ++|+|.+..-.+.+ .....+.+...+ +.++.-+.+....+.+.++... +|.|.+..-+-+.
T Consensus 72 ~~~~~~~~g~dgv~vh~~~~~~-~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~------~d~i~~~~~~~g~t 141 (211)
T cd00429 72 YIEAFAKAGADIITFHAEATDH-LHRTIQLIKELG---MKAGVALNPGTPVEVLEPYLDE------VDLVLVMSVNPGFG 141 (211)
T ss_pred HHHHHHHcCCCEEEECccchhh-HHHHHHHHHHCC---CeEEEEecCCCCHHHHHHHHhh------CCEEEEEEECCCCC
Confidence 3555555 79999888766633 333344444443 3344444322234555665433 3888775433221
Q ss_pred --ccChhhHHHHHHHHHHHHH--hcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc----CCccHHHHHHH
Q 006783 533 --ECGWERLADMQEEILSICG--AAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN----KGKHVVEAVST 604 (631)
Q Consensus 533 --eig~e~l~~~Qk~Ii~~c~--aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs----kG~ypveAV~~ 604 (631)
..+..-+ +.-+++-.... ..++|++++- |+= ...+. -+...|+|++... +-+.|.++++.
T Consensus 142 g~~~~~~~~-~~i~~~~~~~~~~~~~~pi~v~G---------GI~-~env~-~~~~~gad~iivgsai~~~~~~~~~~~~ 209 (211)
T cd00429 142 GQKFIPEVL-EKIRKLRELIPENNLNLLIEVDG---------GIN-LETIP-LLAEAGADVLVAGSALFGSDDYAEAIKE 209 (211)
T ss_pred CcccCHHHH-HHHHHHHHHHHhcCCCeEEEEEC---------CCC-HHHHH-HHHHcCCCEEEECHHHhCCCCHHHHHHH
Confidence 1111111 11122222221 2247887654 222 12222 2223688988876 56678777765
Q ss_pred H
Q 006783 605 L 605 (631)
Q Consensus 605 L 605 (631)
+
T Consensus 210 ~ 210 (211)
T cd00429 210 L 210 (211)
T ss_pred h
Confidence 4
No 424
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=22.51 E-value=1.8e+02 Score=26.97 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=29.8
Q ss_pred hhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEE
Q 006783 502 SGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 502 ~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
..++++.+++... ++|-|+|| ++..+ .+-.+++++.|+..|+.|-+
T Consensus 128 g~~~~l~~~~~~~----~id~v~ia-------l~~~~-~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 128 GDLDDLPELVREH----DIDEVIIA-------LPWSE-EEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp --GGGHHHHHHHH----T--EEEE---------TTS--HHHHHHHHHHHHTTT-EEEE
T ss_pred cCHHHHHHHHHhC----CCCEEEEE-------cCccC-HHHHHHHHHHHHhCCCEEEE
Confidence 3567788888765 78999997 34433 34668999999999999875
No 425
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=22.43 E-value=3.6e+02 Score=23.42 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=39.8
Q ss_pred cEEeeCch-hhhcccCCCCcEEEeCCeEEEEEEEEeCCEEEEEEEec---CCCCceecCCceeec
Q 006783 378 HRITCSSS-CLFDSVKPGEPIAFDDGKIWGLIQGASISEIVVSITHA---GPRGTKLGSGKSINI 438 (631)
Q Consensus 378 ~~I~ct~p-~l~~~v~~Gd~I~iDDGkI~~~V~~v~~~~i~~~V~~a---~~~Gg~L~s~KGINl 438 (631)
.++.+..| +.+..+.+|+.|-+|- +.+.|.++.++.+.+.+..- .-+=+.++.+.-||+
T Consensus 20 ~~~~i~~~~~~~~~~~~g~SIavnG--vcLTV~~~~~~~f~~~l~~eTl~~T~l~~~~~G~~VNl 82 (85)
T PF00677_consen 20 QRLRIEIPDKILSDLKIGGSIAVNG--VCLTVTDINEDWFEVDLIPETLRRTTLGNLKVGDRVNL 82 (85)
T ss_dssp EEEEEEESTGGGGTG-TTSEEEETT--EEEEEEEEETTEEEEEEEHHHHHCSSGGG--TTSEEEE
T ss_pred EEEEEEcCHHHHhhCccCcEEEECC--eeeEEEEecCCEEEEechHHHhhhchhccCCCCCEEEE
Confidence 34555556 7899999999999965 67889999999888877531 122345566666665
No 426
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=22.41 E-value=2.3e+02 Score=31.24 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=44.7
Q ss_pred CChhcHHhHHHHHh-cCCEEEEeccC--------ChhHHHHHHHHHHHhCCCCceEEE--eecChhhhcchHHHHHHhhc
Q 006783 448 LTTKDLMDLEFVAS-HADMVGISFVR--------DSCDIAMLRKELEKRKVQNLGVVL--KIETKSGFERLPHILLEAMK 516 (631)
Q Consensus 448 LTekD~~dl~f~~~-~~D~V~~SFV~--------sa~Dv~~lr~~L~~~~~~~~~Iia--KIEt~~av~NL~eIl~~a~~ 516 (631)
.|-...+++.-+.+ ++|||++|=|- .+-.+..++...... ++.++| -|- .+|+++++..
T Consensus 245 ~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~---~iPv~AiGGI~----~~ni~~l~~~--- 314 (347)
T PRK02615 245 RSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA---PIPWFAIGGID----KSNIPEVLQA--- 314 (347)
T ss_pred EecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCCC----HHHHHHHHHc---
Confidence 45556777777776 89999997652 123355555554432 344554 452 3588887653
Q ss_pred CCCCcEEEEecCCcc
Q 006783 517 SSNPLGVMIARGDLA 531 (631)
Q Consensus 517 ~~~~DGImIaRGDL~ 531 (631)
|.|||.+.++=..
T Consensus 315 --Ga~gVAvisaI~~ 327 (347)
T PRK02615 315 --GAKRVAVVRAIMG 327 (347)
T ss_pred --CCcEEEEeHHHhC
Confidence 6799999865443
No 427
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=22.40 E-value=79 Score=34.16 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=31.3
Q ss_pred CCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhh
Q 006783 519 NPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLV 568 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~ 568 (631)
+.+||+|+ -+|.-.++...-..+..+.+.|+||+++||....-+
T Consensus 235 ~~~GlVl~------~~G~Gn~p~~~~~~l~~a~~~gipVV~~sq~~~G~v 278 (323)
T smart00870 235 GAKGLVLE------GTGAGNVPPDLLEALKEALERGIPVVRTSRCLNGRV 278 (323)
T ss_pred CCCEEEEE------eeCCCCCCHHHHHHHHHHHHCCCEEEEeccCCCcee
Confidence 45899985 233334444456677788899999999999886654
No 428
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=22.37 E-value=6.7e+02 Score=28.34 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=21.0
Q ss_pred EEEecCCCCChHHHHHHHHhCCCEEEeecCCCC
Q 006783 173 IMVTVGQEASESEISDILKAGASIIRINCAHGN 205 (631)
Q Consensus 173 ImvTlgp~aa~~~i~~Li~aGMdvaRINcAHg~ 205 (631)
.++.+|++...+-++++.+.|+..+=| ++.|-
T Consensus 68 avi~vp~~~~~~~l~e~~~~gv~~~vi-~s~gf 99 (447)
T TIGR02717 68 AVIVVPAKYVPQVVEECGEKGVKGAVV-ITAGF 99 (447)
T ss_pred EEEecCHHHHHHHHHHHHhcCCCEEEE-ECCCc
Confidence 445566654444499999999987754 44443
No 429
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=22.33 E-value=6.4e+02 Score=28.02 Aligned_cols=85 Identities=19% Similarity=0.323 Sum_probs=47.5
Q ss_pred ceEEEee--c-ChhhhcchHHHHHHhhcCCCCcEEEEe--------cCCcccccChhhHHHHHHHHHHHHHhc-CCCEEE
Q 006783 492 LGVVLKI--E-TKSGFERLPHILLEAMKSSNPLGVMIA--------RGDLAVECGWERLADMQEEILSICGAA-HVPVIW 559 (631)
Q Consensus 492 ~~IiaKI--E-t~~av~NL~eIl~~a~~~~~~DGImIa--------RGDL~veig~e~l~~~Qk~Ii~~c~aa-gkPvi~ 559 (631)
..+|+.| . +.+.+...-..+..+ +.|+|=+- ..++|..++ .-++.-.+|+..+++. .+||++
T Consensus 100 ~p~i~si~g~~~~~~~~~~a~~~~~~----g~d~ielN~scP~~~~~~~~g~~~~--~~~~~~~~i~~~v~~~~~~Pv~v 173 (420)
T PRK08318 100 RALIASIMVECNEEEWKEIAPLVEET----GADGIELNFGCPHGMSERGMGSAVG--QVPELVEMYTRWVKRGSRLPVIV 173 (420)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHHhc----CCCEEEEeCCCCCCccccCCccccc--CCHHHHHHHHHHHHhccCCcEEE
Confidence 4466666 2 445555554544443 45777652 122444443 3355566677776654 799997
Q ss_pred EechhhhhhhCCCCChhhHHhhhhc---cccCcccc
Q 006783 560 ATQVLESLVKFGVPTRAEITDVASA---RRASCVML 592 (631)
Q Consensus 560 ATQvLESM~~~~~PtRAEvtDva~a---~gaD~vmL 592 (631)
=. .|.-.++.+++.+ .|+|++.+
T Consensus 174 Kl----------~p~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 174 KL----------TPNITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred Ec----------CCCcccHHHHHHHHHHCCCCEEEE
Confidence 32 3544445555544 69999985
No 430
>PRK08999 hypothetical protein; Provisional
Probab=22.30 E-value=1.9e+02 Score=30.48 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred eeecCCCcccC-----------CCCChhcHHhHHHHHh-cCCEEEEecc--------CChhHHHHHHHHHHHhCCCCceE
Q 006783 435 SINIPKSNIHF-----------EGLTTKDLMDLEFVAS-HADMVGISFV--------RDSCDIAMLRKELEKRKVQNLGV 494 (631)
Q Consensus 435 GINlP~~~l~l-----------p~LTekD~~dl~f~~~-~~D~V~~SFV--------~sa~Dv~~lr~~L~~~~~~~~~I 494 (631)
||+++..+++. -.+|-++.+++.-+.+ ++|||++|=| ..+-.+..+++..+... -.+..
T Consensus 207 GvHl~~~d~~~~~~r~~~~~~~ig~S~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~-~Pv~A 285 (312)
T PRK08999 207 GVHLTSAQLAALAARPLPAGRWVAASCHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVP-LPVYA 285 (312)
T ss_pred EEEcChhhcChHhhccCCCCCEEEEecCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCC-CCEEE
Q ss_pred EEeecChhhhcchHHHHHHhhcCCCCcEEEEecC
Q 006783 495 VLKIETKSGFERLPHILLEAMKSSNPLGVMIARG 528 (631)
Q Consensus 495 iaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRG 528 (631)
|.=| ..+|+++++.. |.|||-+-++
T Consensus 286 iGGI----~~~~~~~~~~~-----g~~gva~i~~ 310 (312)
T PRK08999 286 LGGL----GPGDLEEAREH-----GAQGIAGIRG 310 (312)
T ss_pred ECCC----CHHHHHHHHHh-----CCCEEEEEEE
No 431
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=22.22 E-value=5.5e+02 Score=27.63 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCCCceEEEeecCh-------hhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHH
Q 006783 478 AMLRKELEKRKVQNLGVVLKIETK-------SGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSIC 550 (631)
Q Consensus 478 ~~lr~~L~~~~~~~~~IiaKIEt~-------~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c 550 (631)
..++.....+...++.|+|..++. ++++....-.+ + |.|+|||- | +... -++|...|
T Consensus 136 ~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~e-A----GAD~ifv~-~------~~~~----~~ei~~~~ 199 (290)
T TIGR02321 136 GKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEE-A----GADAILIH-S------RQKT----PDEILAFV 199 (290)
T ss_pred HHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHH-c----CCCEEEec-C------CCCC----HHHHHHHH
Confidence 333333333333578899999986 44444443332 3 78999993 2 1111 34566666
Q ss_pred HhcCC--CEEEEechhhhhhhCCCCChhhHHhhhhccccCcccccCCccHHH-HHHHHHHHHHHHhh
Q 006783 551 GAAHV--PVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLNKGKHVVE-AVSTLDKILHINTA 614 (631)
Q Consensus 551 ~aagk--Pvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLskG~ypve-AV~~L~~Il~r~e~ 614 (631)
++... |+.+ ++ .+.|.++.+|..+.. ++.. ++.|+++.. |.+.|.+.++.+..
T Consensus 200 ~~~~~p~pv~~----~~--~~~p~~~~~~l~~lg---~~~~--v~~g~~~~~aa~~a~~~~~~~i~~ 255 (290)
T TIGR02321 200 KSWPGKVPLVL----VP--TAYPQLTEADIAALS---KVGI--VIYGNHAIRAAVGAVREVFARIRR 255 (290)
T ss_pred HhcCCCCCeEE----ec--CCCCCCCHHHHHHhc---CCcE--EEEChHHHHHHHHHHHHHHHHHHH
Confidence 76654 6642 11 245666666644432 1222 555665543 45666666666553
No 432
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=22.17 E-value=2.2e+02 Score=31.67 Aligned_cols=96 Identities=19% Similarity=0.154 Sum_probs=59.1
Q ss_pred cHHhHHHHHh-c-CCEEEEeccC--C---------------hhHHHHHHHHHHHhCC-CCceEEEeecChhhhcchHHHH
Q 006783 452 DLMDLEFVAS-H-ADMVGISFVR--D---------------SCDIAMLRKELEKRKV-QNLGVVLKIETKSGFERLPHIL 511 (631)
Q Consensus 452 D~~dl~f~~~-~-~D~V~~SFV~--s---------------a~Dv~~lr~~L~~~~~-~~~~IiaKIEt~~av~NL~eIl 511 (631)
+.+++..+++ . +|+|.+|--. + ..-+..+.+.+.+.+. .++.||+ --|+.+=.+++
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv~ 301 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADVA 301 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHHH
Confidence 4446666664 4 9999998764 1 1233445555554432 3466665 34555555555
Q ss_pred HHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEec
Q 006783 512 LEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQ 562 (631)
Q Consensus 512 ~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQ 562 (631)
+.-+ -|.|+|.+||.=|..- + --....|+.-.+|+.+|||
T Consensus 302 kala--LGAd~V~ig~~~l~al-~--------c~~~~~c~~~~cP~Giat~ 341 (392)
T cd02808 302 KALA--LGADAVGIGTAALIAL-G--------CIQARKCHTNTCPVGVATQ 341 (392)
T ss_pred HHHH--cCCCeeeechHHHHhc-c--------hHHHHhcCCCCCCcccccC
Confidence 4332 2679999998766432 1 1234889999999999998
No 433
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=22.13 E-value=9.1e+02 Score=25.15 Aligned_cols=68 Identities=26% Similarity=0.238 Sum_probs=49.9
Q ss_pred hHH-HHHhcCCEEEEeccCChhHHHHHHHHHHHhCCC--CceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcc
Q 006783 455 DLE-FVASHADMVGISFVRDSCDIAMLRKELEKRKVQ--NLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLA 531 (631)
Q Consensus 455 dl~-f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~--~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~ 531 (631)
.++ |+..++|+|.+-+ ++..++.+.-+.+++.| . ..+|..+=+| -++.+..++... |.|+| ++
T Consensus 83 ~i~~~~~aGad~It~H~-Ea~~~~~~~l~~Ik~~g-~~~kaGlalnP~T--p~~~i~~~l~~v------D~VLi----Mt 148 (228)
T PRK08091 83 VAKACVAAGADIVTLQV-EQTHDLALTIEWLAKQK-TTVLIGLCLCPET--PISLLEPYLDQI------DLIQI----LT 148 (228)
T ss_pred HHHHHHHhCCCEEEEcc-cCcccHHHHHHHHHHCC-CCceEEEEECCCC--CHHHHHHHHhhc------CEEEE----EE
Confidence 444 4555899998864 44556777777788877 4 6889999999 568889998764 99999 45
Q ss_pred cccCh
Q 006783 532 VECGW 536 (631)
Q Consensus 532 veig~ 536 (631)
|+=|+
T Consensus 149 V~PGf 153 (228)
T PRK08091 149 LDPRT 153 (228)
T ss_pred ECCCC
Confidence 66555
No 434
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.03 E-value=1.3e+02 Score=26.85 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=32.1
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccC
Q 006783 535 GWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRAS 588 (631)
Q Consensus 535 g~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD 588 (631)
|-+-+|.+ .+.+...++.|||+++.| +++.-|++++.+-....|.+
T Consensus 12 g~~~ipga-~e~l~~L~~~g~~~~~lT-------Nns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 12 GNEPIPGA-VEALDALRERGKPVVFLT-------NNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp TTEE-TTH-HHHHHHHHHTTSEEEEEE-------S-SSS-HHHHHHHHHHTTTT
T ss_pred CCCcCcCH-HHHHHHHHHcCCCEEEEe-------CCCCCCHHHHHHHHHhcCcC
Confidence 33344444 456677899999999988 78888999988877776654
No 435
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=21.93 E-value=82 Score=34.31 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=29.7
Q ss_pred CCcEEEEecCCcccccChhhHH--HHHHHHHHHHHhcCCCEEEEechhhhhh
Q 006783 519 NPLGVMIARGDLAVECGWERLA--DMQEEILSICGAAHVPVIWATQVLESLV 568 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~e~l~--~~Qk~Ii~~c~aagkPvi~ATQvLESM~ 568 (631)
+.+||+|+ -+|.-.++ ...-+.+..+.+.|+||+++||..+.-+
T Consensus 233 ~~~GiVl~------~~G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~Sr~~~G~v 278 (335)
T PRK09461 233 PVKALILR------SYGVGNAPQNPALLQELKEASERGIVVVNLTQCMSGKV 278 (335)
T ss_pred CCCEEEEc------cCCCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCcC
Confidence 46899995 23333333 3344556777888999999999986543
No 436
>PRK07004 replicative DNA helicase; Provisional
Probab=21.62 E-value=6e+02 Score=28.91 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhh--CCCCChhhHHhhhhc-cccCccccc
Q 006783 536 WERLADMQEEILSICGAAHVPVIWATQVLESLVK--FGVPTRAEITDVASA-RRASCVMLN 593 (631)
Q Consensus 536 ~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~--~~~PtRAEvtDva~a-~gaD~vmLs 593 (631)
...+.++-+.+=.+|+..++|||+.+|+=-...+ ...|.-+.+.|-... ..||.||+-
T Consensus 346 ~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l 406 (460)
T PRK07004 346 ATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFI 406 (460)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEe
Confidence 3568888889999999999999999998544333 346665444443333 689998874
No 437
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=21.58 E-value=1.5e+02 Score=29.83 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=33.7
Q ss_pred HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhh
Q 006783 186 ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQM 222 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~ 222 (631)
|.+|.++|++.+||.+-.-+++.-.++++..|++-..
T Consensus 162 l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~~ 198 (233)
T PF01136_consen 162 LPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALDN 198 (233)
T ss_pred HHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987543
No 438
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=21.55 E-value=7.4e+02 Score=25.74 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=56.0
Q ss_pred HHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEE
Q 006783 480 LRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIW 559 (631)
Q Consensus 480 lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ 559 (631)
+|+.|.... .-.++..++=++..+ |++..+ |.|.|+|. +|-+......++. ++..|+..|..+++
T Consensus 3 lk~~l~~g~-~~~g~~~~~~~p~~~----e~~~~~----g~D~v~iD-----lEH~~~~~~~~~~-~~~a~~~~g~~~~V 67 (249)
T TIGR02311 3 FKQALKEGQ-PQIGLWLGLADPYAA----EICAGA----GFDWLLID-----GEHAPNDVRTILS-QLQALAPYPSSPVV 67 (249)
T ss_pred HHHHHHCCC-ceEEEEEeCCCcHHH----HHHHhc----CCCEEEEe-----ccCCCCCHHHHHH-HHHHHHhcCCCcEE
Confidence 556665422 235666776666554 444444 78999995 2444445555555 77888888888776
Q ss_pred EechhhhhhhCCCCChhhHHhhhhc--cccCcccccCC
Q 006783 560 ATQVLESLVKFGVPTRAEITDVASA--RRASCVMLNKG 595 (631)
Q Consensus 560 ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLskG 595 (631)
.-+.++.. |+..+ .|+|+||+-+=
T Consensus 68 ---------Rv~~~~~~---~i~~~Ld~Ga~gIivP~v 93 (249)
T TIGR02311 68 ---------RPAIGDPV---LIKQLLDIGAQTLLVPMI 93 (249)
T ss_pred ---------ECCCCCHH---HHHHHhCCCCCEEEecCc
Confidence 33344443 56555 59999999743
No 439
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=21.44 E-value=4.5e+02 Score=26.05 Aligned_cols=52 Identities=21% Similarity=0.153 Sum_probs=28.9
Q ss_pred ChhhHHhhhhccccCccccc--CCccHHHHHHHHHHHHHHHhhcccccccCCCCCCC
Q 006783 574 TRAEITDVASARRASCVMLN--KGKHVVEAVSTLDKILHINTAQMKADLMKPLLPSS 628 (631)
Q Consensus 574 tRAEvtDva~a~gaD~vmLs--kG~ypveAV~~L~~Il~r~e~~~k~~~lr~l~~~~ 628 (631)
+..+....+...+...+-.| .|...-+..++|.+ .+..+.|..-++++..|-
T Consensus 128 ~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~---~~~~~~~~~~~~~~~~~~ 181 (211)
T cd04111 128 TREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQ---EIYERIKRGELCALDGWD 181 (211)
T ss_pred CHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH---HHHHHhhcCCCCcccccc
Confidence 33444444444454444455 57777777776654 344444555567777774
No 440
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=21.41 E-value=99 Score=31.18 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=40.6
Q ss_pred HHHHHHhCCCEEEeecCC--------CChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeee
Q 006783 186 ISDILKAGASIIRINCAH--------GNPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLR 239 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAH--------g~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIR 239 (631)
.++++++|+++.=||..- +..++|.+++.-|+.+.+ ....+.|.+|+.=|++=
T Consensus 25 a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~-~~~~~plSIDT~~~~v~ 85 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIRE-ENPDVPLSIDTFNPEVA 85 (210)
T ss_dssp HHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHH-HHTTSEEEEEESSHHHH
T ss_pred HHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhc-cCCCeEEEEECCCHHHH
Confidence 788999999999999643 446789999999998876 23457788899777643
No 441
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=21.39 E-value=4.2e+02 Score=25.77 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=36.1
Q ss_pred HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEE
Q 006783 186 ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQI 229 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~I 229 (631)
+.+++++|++..-+..-.-+.+...+.++.+.+..++.+.++-|
T Consensus 18 l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~lii 61 (180)
T PF02581_consen 18 LEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPLII 61 (180)
T ss_dssp HHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEE
T ss_pred HHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEe
Confidence 99999999999999999989999999999999998887655444
No 442
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=21.37 E-value=1.1e+02 Score=32.98 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=32.3
Q ss_pred CCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhh
Q 006783 519 NPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVK 569 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~ 569 (631)
+++||+|+ -+|.-.++....+.+..+.+.|+||+.+||..+..+.
T Consensus 224 ~~~GlVl~------~~G~Gn~~~~~~~~l~~a~~~gipVV~~sr~~~G~v~ 268 (313)
T PF00710_consen 224 GAKGLVLE------GYGAGNVPPALLEALARAVERGIPVVVTSRCPSGGVD 268 (313)
T ss_dssp T-SEEEEE------EBTTTBSSHHHHHHHHHHHHTTSEEEEEESSSCS-BB
T ss_pred cCCEEEEe------ccCCCCCCHHHHHHHHHHHhcCceEEEecccccCCcc
Confidence 46999996 2333336666677778888999999999998876665
No 443
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.30 E-value=1.5e+02 Score=34.02 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=31.0
Q ss_pred HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHH
Q 006783 186 ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTS 219 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a 219 (631)
++.|+++|+++.=|.++||.-..-.+||+.||+.
T Consensus 232 a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~ 265 (479)
T PRK07807 232 ARALLEAGVDVLVVDTAHGHQEKMLEALRAVRAL 265 (479)
T ss_pred HHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHH
Confidence 9999999999999999999988888888888873
No 444
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.26 E-value=2.2e+02 Score=26.85 Aligned_cols=63 Identities=22% Similarity=0.230 Sum_probs=41.8
Q ss_pred hHHHHHh-cCCEEEEeccC--ChhHHHHHHHHHHHhCCCCceEEEe--ecChhhhcchHHHHHHhhcCCCCcEEEEe
Q 006783 455 DLEFVAS-HADMVGISFVR--DSCDIAMLRKELEKRKVQNLGVVLK--IETKSGFERLPHILLEAMKSSNPLGVMIA 526 (631)
Q Consensus 455 dl~f~~~-~~D~V~~SFV~--sa~Dv~~lr~~L~~~~~~~~~IiaK--IEt~~av~NL~eIl~~a~~~~~~DGImIa 526 (631)
-++-+.+ ++|+|++|-.. +.+.+..+.+.|++++..++.|++= +-+.+ .++ +.++ |+|+++=.
T Consensus 45 ~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~----~~~-l~~~----Gvd~~~~~ 112 (132)
T TIGR00640 45 IARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQD----FDE-LKEM----GVAEIFGP 112 (132)
T ss_pred HHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHh----HHH-HHHC----CCCEEECC
Confidence 3455555 69999999875 6778888888898877656777774 42211 222 3333 78888754
No 445
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=21.19 E-value=71 Score=39.13 Aligned_cols=47 Identities=34% Similarity=0.467 Sum_probs=37.5
Q ss_pred CcccccChhhHHHHHHHHHHHHHhcCCCEEEEec-----hhhhhhhCCCCChhh
Q 006783 529 DLAVECGWERLADMQEEILSICGAAHVPVIWATQ-----VLESLVKFGVPTRAE 577 (631)
Q Consensus 529 DL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQ-----vLESM~~~~~PtRAE 577 (631)
||....+-+ +...+.++...++++|+-+|+||| |.-. ++..+|||=+
T Consensus 650 dlm~~~~k~-ve~~i~rLa~~ara~GIHlilatqRps~dVit~-ikanipsrIa 701 (858)
T COG1674 650 DLMMVAGKE-LEELIARLAQKGRAAGIHLILATQRPSVDVITG-IKANIPTRIA 701 (858)
T ss_pred HHhhhhhHH-HHHHHHHHHHhhhhcceEEEEecCCCCcchhHH-HHhCCcceEE
Confidence 454444444 899999999999999999999999 5555 7888888843
No 446
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=21.14 E-value=2.5e+02 Score=29.87 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHhhcCCCCcEEEE---ecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhcccc
Q 006783 511 LLEAMKSSNPLGVMI---ARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRA 587 (631)
Q Consensus 511 l~~a~~~~~~DGImI---aRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~ga 587 (631)
+..+ |.||||+ +=-=+.-++|.+.++.+-.-+-+.-+..++||++ +|| .=.--..-++|++.||
T Consensus 43 leeg----G~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGv--NVL-------rNd~vaA~~IA~a~gA 109 (263)
T COG0434 43 LEEG----GVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGV--NVL-------RNDAVAALAIAYAVGA 109 (263)
T ss_pred HHhC----CCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhcccccee--eee-------ccccHHHHHHHHhcCC
Q ss_pred Cccccc--CCcc
Q 006783 588 SCVMLN--KGKH 597 (631)
Q Consensus 588 D~vmLs--kG~y 597 (631)
|.+=.| .|-|
T Consensus 110 ~FIRVN~~tg~~ 121 (263)
T COG0434 110 DFIRVNVLTGAY 121 (263)
T ss_pred CEEEEEeeeceE
No 447
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.13 E-value=1.8e+02 Score=30.73 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=33.2
Q ss_pred HHHHHHhCCCEEEeecCCCC-------h--------------HHHHHHHHHHHHHHhhcCCceEEEecCCC
Q 006783 186 ISDILKAGASIIRINCAHGN-------P--------------SIWSEIIRRVKTSSQMLEMPCQILMDLAG 235 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg~-------~--------------e~w~~mI~~vR~a~~~~g~~~~IlmDL~G 235 (631)
.+...++|.|.+=||++||- | ..++-+.+-|+++.+.+|..+.|.+++..
T Consensus 147 A~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~ 217 (327)
T cd02803 147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSA 217 (327)
T ss_pred HHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEech
Confidence 45667889999999999983 2 12333445555555566766777777643
No 448
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=21.05 E-value=7.3e+02 Score=26.11 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=61.4
Q ss_pred HHHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEE--EecCCccc
Q 006783 456 LEFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVM--IARGDLAV 532 (631)
Q Consensus 456 l~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGIm--IaRGDL~v 532 (631)
++.+.+ ++|.+.++=. ..++.+.+.+.+++.|.+ .|.-+=...--+.+..|.+.+ .|.+ +++ .|+
T Consensus 110 ~~~~~~aGvdGviipDL-p~ee~~~~~~~~~~~gl~---~I~lvap~t~~eri~~i~~~s------~gfIY~vs~--~Gv 177 (258)
T PRK13111 110 AADAAEAGVDGLIIPDL-PPEEAEELRAAAKKHGLD---LIFLVAPTTTDERLKKIASHA------SGFVYYVSR--AGV 177 (258)
T ss_pred HHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHcCCc---EEEEeCCCCCHHHHHHHHHhC------CCcEEEEeC--CCC
Confidence 344444 6777777644 235666666666666533 332222222244566666554 3332 343 333
Q ss_pred ccCh-hhHHHHHHHHHHHHHh-cCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 533 ECGW-ERLADMQEEILSICGA-AHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 533 eig~-e~l~~~Qk~Ii~~c~a-agkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
.|. ...+.-.++.+..+++ .++|+++.. |+=+..++..+.. +||++...
T Consensus 178 -TG~~~~~~~~~~~~i~~vk~~~~~pv~vGf---------GI~~~e~v~~~~~--~ADGviVG 228 (258)
T PRK13111 178 -TGARSADAADLAELVARLKAHTDLPVAVGF---------GISTPEQAAAIAA--VADGVIVG 228 (258)
T ss_pred -CCcccCCCccHHHHHHHHHhcCCCcEEEEc---------ccCCHHHHHHHHH--hCCEEEEc
Confidence 232 1223334445555554 499999854 6777777666554 48887764
No 449
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=20.87 E-value=4e+02 Score=27.27 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=39.2
Q ss_pred HHHHHHhC-CCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEE
Q 006783 186 ISDILKAG-ASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQI 229 (631)
Q Consensus 186 i~~Li~aG-MdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~I 229 (631)
+++.+++| ++++-+-.-+-+...+.++++.++...+.+|.++-|
T Consensus 32 l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liI 76 (221)
T PRK06512 32 LRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALI 76 (221)
T ss_pred HHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 99999999 799999999999999999999999999988855444
No 450
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=20.79 E-value=4.7e+02 Score=29.05 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=34.7
Q ss_pred HHHHHHhCCCEEEeecCC-C------------------------------ChHHHHHHHHHHHHHHhhcCCceEEEecCC
Q 006783 186 ISDILKAGASIIRINCAH-G------------------------------NPSIWSEIIRRVKTSSQMLEMPCQILMDLA 234 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAH-g------------------------------~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~ 234 (631)
++++++.|.+.+.|.+.. + +.+.-+..++.|+.+.+..|..+.|++|--
T Consensus 135 a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~~l~vDaN 214 (404)
T PRK15072 135 VARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDLHLLHDVH 214 (404)
T ss_pred HHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCceEEEECC
Confidence 778888999999998742 1 112224445666666667888899999964
Q ss_pred C
Q 006783 235 G 235 (631)
Q Consensus 235 G 235 (631)
+
T Consensus 215 ~ 215 (404)
T PRK15072 215 H 215 (404)
T ss_pred C
Confidence 3
No 451
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=20.78 E-value=2.4e+02 Score=30.64 Aligned_cols=73 Identities=18% Similarity=0.297 Sum_probs=48.0
Q ss_pred HhhcCCCCCCCCeEEEEecCCC-CChH---H-HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecC
Q 006783 159 ELLLGPLRHNQTNHIMVTVGQE-ASES---E-ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDL 233 (631)
Q Consensus 159 ~~l~G~~~~~R~TkImvTlgp~-aa~~---~-i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL 233 (631)
-.|||.... -+.+..++.... ...+ . -+.+.+.|-+.+.|....++.. .-++.|+...+.+|..+.|++|-
T Consensus 120 ~~LLGg~~r-~~v~~y~~~~~~~~~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~---~d~~~v~avRe~~g~~~~l~iDa 195 (372)
T COG4948 120 YKLLGGKVR-DEVRAYASGGGGEDPEEMAAEAARALVELGFKALKLKVGVGDGD---EDLERVRALREAVGDDVRLMVDA 195 (372)
T ss_pred HHHcCCcee-eeEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEecCCCCchH---HHHHHHHHHHHHhCCCceEEEeC
Confidence 346676554 445555555421 1222 2 6666668999999999999988 44555555555688889999996
Q ss_pred CC
Q 006783 234 AG 235 (631)
Q Consensus 234 ~G 235 (631)
-|
T Consensus 196 n~ 197 (372)
T COG4948 196 NG 197 (372)
T ss_pred CC
Confidence 44
No 452
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=20.74 E-value=3.6e+02 Score=30.16 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=38.8
Q ss_pred HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCC
Q 006783 186 ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAG 235 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~G 235 (631)
|+.-.++|+|.|=+|+.-.++-.+.+ +..+=+|++.+|-.+-+.+|..+
T Consensus 23 i~~A~~~GIDgFaLNig~~d~~~~~~-l~~a~~AA~~~gFKlf~SfD~~~ 71 (386)
T PF03659_consen 23 IRLAQAAGIDGFALNIGSSDSWQPDQ-LADAYQAAEAVGFKLFFSFDMNS 71 (386)
T ss_pred HHHHHHcCCCEEEEecccCCcccHHH-HHHHHHHHHhcCCEEEEEecccC
Confidence 99999999999999999666544444 44444666788999999999853
No 453
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=20.70 E-value=4.6e+02 Score=29.84 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=60.6
Q ss_pred CCCCChhcHHhH-HH-HHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEe-------------ecChhhhcchHH
Q 006783 445 FEGLTTKDLMDL-EF-VASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLK-------------IETKSGFERLPH 509 (631)
Q Consensus 445 lp~LTekD~~dl-~f-~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaK-------------IEt~~av~NL~e 509 (631)
+..+|++|+-+. +. +.+++||+.+=--=+.+-++.+++ .+ .-++|+++ =|+|- ++++|+
T Consensus 134 ~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~----~~-R~~giVSRGGs~~~~WM~~~~~ENPl-ye~fD~ 207 (423)
T TIGR00190 134 VEDMDEDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKR----SG-RITGIVSRGGAILAAWMLHHHKENPL-YKNFDY 207 (423)
T ss_pred hhhCCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHh----CC-CccCeecCcHHHHHHHHHHcCCcCch-HHHHHH
Confidence 456788887553 33 445799999854335555555543 11 12334433 24443 689999
Q ss_pred HHHHhhcCCCCcEEEEecCCcccccCh----------hhHHHHHH-----HHHHHHHhcCCCEEE
Q 006783 510 ILLEAMKSSNPLGVMIARGDLAVECGW----------ERLADMQE-----EILSICGAAHVPVIW 559 (631)
Q Consensus 510 Il~~a~~~~~~DGImIaRGDL~veig~----------e~l~~~Qk-----~Ii~~c~aagkPvi~ 559 (631)
|+..+ .+.|..+++|- -+-+.+|| ++..+|+++|+-|++
T Consensus 208 lLeI~-----------~~yDVtlSLGDglRPG~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMV 261 (423)
T TIGR00190 208 ILEIA-----------KEYDVTLSLGDGLRPGCIADATDRAQISELITLGELVERAREADVQCMV 261 (423)
T ss_pred HHHHH-----------HHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 99887 45666666664 23444444 668899999999986
No 454
>PRK10425 DNase TatD; Provisional
Probab=20.59 E-value=8.8e+02 Score=25.30 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=51.1
Q ss_pred hcHHhH-HHHHh-cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEee------c-ChhhhcchHHHHHHhhcCCCCc
Q 006783 451 KDLMDL-EFVAS-HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKI------E-TKSGFERLPHILLEAMKSSNPL 521 (631)
Q Consensus 451 kD~~dl-~f~~~-~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKI------E-t~~av~NL~eIl~~a~~~~~~D 521 (631)
.|.+.+ +.+.+ ++..+...-+ +.++.....++.+... .+....=| | +.+.++.|++++. + ..
T Consensus 15 ~d~~~vl~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~~--~v~~~~GiHP~~~~~~~~~~~~~l~~~~~----~--~~ 85 (258)
T PRK10425 15 KDRDDVVARAFAAGVNGMLITGT-NLRESQQAQKLARQYP--SCWSTAGVHPHDSSQWQAATEEAIIELAA----Q--PE 85 (258)
T ss_pred ccHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHHHHHHhCC--CEEEEEEeCcCccccCCHHHHHHHHHhcc----C--CC
Confidence 344443 33443 4444444333 5777777777655432 22211111 2 2334455555442 1 13
Q ss_pred EEEEecCCcccccChh-hHHHHHH----HHHHHHHhcCCCEEEEe
Q 006783 522 GVMIARGDLAVECGWE-RLADMQE----EILSICGAAHVPVIWAT 561 (631)
Q Consensus 522 GImIaRGDL~veig~e-~l~~~Qk----~Ii~~c~aagkPvi~AT 561 (631)
++|=|..|++.... ...+.|+ ..+..|++.++||++=+
T Consensus 86 --~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~ 128 (258)
T PRK10425 86 --VVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHC 128 (258)
T ss_pred --EEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 34446666665431 2245564 45889999999999643
No 455
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=20.53 E-value=1.2e+02 Score=33.42 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=34.7
Q ss_pred CCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhh
Q 006783 519 NPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVK 569 (631)
Q Consensus 519 ~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~ 569 (631)
+.+||+|+ -+|.-.++...-+.++.+.+.|+||+.+||.++..+.
T Consensus 254 g~~GiVie------~~G~G~~~~~~~~~i~~~~~~gi~VV~sSr~~~G~v~ 298 (351)
T COG0252 254 GAKGLVLE------GTGSGNVTPALIESIERASKRGIPVVYSSRCLSGRVN 298 (351)
T ss_pred CCCEEEEE------EECCCCCChHHHHHHHHHHHCCCeEEEEeccCCCccc
Confidence 57999996 3444466666667778888999999999999976654
No 456
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=20.50 E-value=4.3e+02 Score=27.27 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=51.0
Q ss_pred HHHHh-cCCEEEEeccCC-----hhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCc
Q 006783 457 EFVAS-HADMVGISFVRD-----SCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDL 530 (631)
Q Consensus 457 ~f~~~-~~D~V~~SFV~s-----a~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL 530 (631)
+...+ ++|.|.++-+.+ .-|+..+++..+.. ++.||+- -|+.+.+++...- +..++||||+|+-..
T Consensus 162 ~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~---~ipvia~----GGi~s~~di~~~~-~~g~~dgv~~g~a~~ 233 (254)
T TIGR00735 162 KEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAV---KIPVIAS----GGAGKPEHFYEAF-TKGKADAALAASVFH 233 (254)
T ss_pred HHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhC---CCCEEEe----CCCCCHHHHHHHH-HcCCcceeeEhHHHh
Confidence 33344 699998876644 12345555544332 3445542 3455555544322 222489999999877
Q ss_pred ccccChhhHHHHHHHHHHHHHhcCCCE
Q 006783 531 AVECGWERLADMQEEILSICGAAHVPV 557 (631)
Q Consensus 531 ~veig~e~l~~~Qk~Ii~~c~aagkPv 557 (631)
.-+++++ ++...|+++|.||
T Consensus 234 ~~~~~~~-------~~~~~~~~~gi~~ 253 (254)
T TIGR00735 234 YREITIG-------EVKEYLAERGIPV 253 (254)
T ss_pred CCCCCHH-------HHHHHHHHCCCcc
Confidence 7777644 5677788888875
No 457
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.42 E-value=3.4e+02 Score=27.53 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEechhhhhhhCCCCChhhHHhhhhccccCccccc
Q 006783 541 DMQEEILSICGAAHVPVIWATQVLESLVKFGVPTRAEITDVASARRASCVMLN 593 (631)
Q Consensus 541 ~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~PtRAEvtDva~a~gaD~vmLs 593 (631)
.+..+++..++++|++|++-| .-+..++ ..+...|+|+|+-+
T Consensus 218 ~~~~~~i~~~~~~G~~v~vwt----------vn~~~~~-~~~~~~Gvdgi~TD 259 (263)
T cd08567 218 LVTKELVDEAHALGLKVVPWT----------VNDPEDM-ARLIDLGVDGIITD 259 (263)
T ss_pred hcCHHHHHHHHHCCCEEEEec----------CCCHHHH-HHHHHcCCCEEEcC
Confidence 356789999999999999877 2222332 24445799998754
No 458
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=20.32 E-value=2.3e+02 Score=31.40 Aligned_cols=83 Identities=19% Similarity=0.146 Sum_probs=59.8
Q ss_pred cHHhHHHHHh---cCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecC
Q 006783 452 DLMDLEFVAS---HADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARG 528 (631)
Q Consensus 452 D~~dl~f~~~---~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRG 528 (631)
+.++.+|+++ .+|++.+.|-. -.+.-+.+++... ..+..|++-..|.+--+-.=+++.. |+|||++..-
T Consensus 75 ~~~~e~~a~~~~~~~~~viv~~~d--W~iIPlEnlIA~~-~~~~~l~a~v~~~~eA~~a~~~LE~-----G~dGVvl~~~ 146 (344)
T PRK02290 75 DKEDEEFAAELAKEVDYVIVEGRD--WTIIPLENLIADL-GQSGKIIAGVADAEEAKLALEILEK-----GVDGVLLDPD 146 (344)
T ss_pred CHHHHHHHHHhhccCCEEEEECCC--CcEecHHHHHhhh-cCCceEEEEeCCHHHHHHHHHHhcc-----CCCeEEECCC
Confidence 5566677664 47999997742 2466777888876 4678899999999888877788764 6899999866
Q ss_pred CcccccChhhHHHHHHHHHHHHHh
Q 006783 529 DLAVECGWERLADMQEEILSICGA 552 (631)
Q Consensus 529 DL~veig~e~l~~~Qk~Ii~~c~a 552 (631)
|.+ -.+++...|..
T Consensus 147 d~~----------ei~~~~~~~~~ 160 (344)
T PRK02290 147 DPN----------EIKAIVALIEE 160 (344)
T ss_pred CHH----------HHHHHHHHHhc
Confidence 532 33566666655
No 459
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=20.31 E-value=4.5e+02 Score=29.18 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=35.5
Q ss_pred HHHHHHhCCCEEEeecCCCChHHHHHHHHHHHHHHhhcCCceEEEecCCC
Q 006783 186 ISDILKAGASIIRINCAHGNPSIWSEIIRRVKTSSQMLEMPCQILMDLAG 235 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~G 235 (631)
++++++.|.+.+.|-....++ .+.++.||.+.+.+|..+.+++|--+
T Consensus 168 a~~~~~~Gf~~~Kikvg~~~~---~~di~~v~avRe~~G~~~~l~vDaN~ 214 (385)
T cd03326 168 MRRYLDRGYTVVKIKIGGAPL---DEDLRRIEAALDVLGDGARLAVDANG 214 (385)
T ss_pred HHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 788889999999998765554 34566666666668888999999754
No 460
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=20.26 E-value=1.6e+02 Score=30.54 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=42.4
Q ss_pred HHHHHHhCCCEEEeecCCC--------ChHHHHHHHHHHHHHHhhcCCceEEEecCCCCeee
Q 006783 186 ISDILKAGASIIRINCAHG--------NPSIWSEIIRRVKTSSQMLEMPCQILMDLAGPKLR 239 (631)
Q Consensus 186 i~~Li~aGMdvaRINcAHg--------~~e~w~~mI~~vR~a~~~~g~~~~IlmDL~GPKIR 239 (631)
.++|+++|.++.=||+.-. ..++|.+|..-|+...+..+ +.|.+|..=|++=
T Consensus 30 a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~--~piSIDT~~~~v~ 89 (258)
T cd00423 30 ARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPD--VPISVDTFNAEVA 89 (258)
T ss_pred HHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCC--CeEEEeCCcHHHH
Confidence 7899999999999998766 56789999999999876665 5578898766543
No 461
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=20.22 E-value=1.4e+02 Score=32.77 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=50.5
Q ss_pred CCceeecCCCcccCCCCChhcHHhHHHHHhcCCEEEEeccCChhHHHHHHHHHHHhCCCCceEEEeecC---hhh-----
Q 006783 432 SGKSINIPKSNIHFEGLTTKDLMDLEFVASHADMVGISFVRDSCDIAMLRKELEKRKVQNLGVVLKIET---KSG----- 503 (631)
Q Consensus 432 s~KGINlP~~~l~lp~LTekD~~dl~f~~~~~D~V~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt---~~a----- 503 (631)
.+.|++.|+.-+..|.+++ ++++++++|++..| +.+-++++-+.-.+.| +.-.|+.||-- ++|
T Consensus 68 r~~g~~~~~~Llr~P~~se-----i~~vv~~~Dvs~~s---el~~arqlse~A~~~G-k~h~VlLmVd~~DlreG~~~~~ 138 (353)
T COG3457 68 REAGCTIPGHLLRSPCMSE-----IEDVVRKVDVSTVS---ELDTARQLSEAAVRMG-KVHDVLLMVDYGDLREGQWGFL 138 (353)
T ss_pred HHcCCCcCceEeecccHHH-----HHHHHHhcCeEEEe---cHHHHHHHHHHHHHhC-cceeEEEEEEcccccCcchhhH
Confidence 4679999999999998765 67788999955554 6666777666555555 55678888843 222
Q ss_pred hcchHHHHHHhh
Q 006783 504 FERLPHILLEAM 515 (631)
Q Consensus 504 v~NL~eIl~~a~ 515 (631)
++.|++.+.+=.
T Consensus 139 ~~~l~~~V~eI~ 150 (353)
T COG3457 139 IEDLEETVEEIQ 150 (353)
T ss_pred HHHHHHHHHHHh
Confidence 234666555543
No 462
>PRK09248 putative hydrolase; Validated
Probab=20.15 E-value=2.1e+02 Score=29.30 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=52.5
Q ss_pred hcCCEEEEec--c----CC-hhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCccc-
Q 006783 461 SHADMVGISF--V----RD-SCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAV- 532 (631)
Q Consensus 461 ~~~D~V~~SF--V----~s-a~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~v- 532 (631)
...|++..|+ . .. ...+..+.+.+ +.| ...|+|-.+........++++..... .| .+|=|--+.|.-
T Consensus 92 ~~~D~vi~svH~~~~~~~~~~~~~~~~i~~l-~~g--~~~vLAHP~~~~~~~~~~~~~~~~~~-~g-~~lEvN~~~l~~~ 166 (246)
T PRK09248 92 KKLDIVIAGFHEPVFAPGDKETNTQALINAI-KNG--RVDIIGHPGNPKYPIDIEAVVKAAKE-HN-VALEINNSSFGHS 166 (246)
T ss_pred hhCCEEEEecccCccCCcCHHHHHHHHHHHH-hcC--CCCEEECcCCCCCcccHHHHHHHHHH-hC-CEEEEECCCCccC
Confidence 3578888874 1 11 12344444455 333 46789988865433345566555422 22 355554444411
Q ss_pred ccChhhHHHHHHHHHHHHHhcCCCEEEEe
Q 006783 533 ECGWERLADMQEEILSICGAAHVPVIWAT 561 (631)
Q Consensus 533 eig~e~l~~~Qk~Ii~~c~aagkPvi~AT 561 (631)
-.|. ..-.+++++.|.+.|.|+++++
T Consensus 167 ~~g~---~~~~~~~~~~~~~~g~~~~~gS 192 (246)
T PRK09248 167 RKGS---EDNCRAIAALCKKAGVWVALGS 192 (246)
T ss_pred CCCC---cChHHHHHHHHHHcCCeEEEeC
Confidence 1111 1245789999999999998866
No 463
>PRK11579 putative oxidoreductase; Provisional
Probab=20.12 E-value=1.8e+02 Score=31.17 Aligned_cols=83 Identities=13% Similarity=0.024 Sum_probs=51.5
Q ss_pred hhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHHHHHHHhcCCCEEEEechhhhhhhCCC-CChhhHHhh
Q 006783 503 GFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEILSICGAAHVPVIWATQVLESLVKFGV-PTRAEITDV 581 (631)
Q Consensus 503 av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~Ii~~c~aagkPvi~ATQvLESM~~~~~-PtRAEvtDv 581 (631)
...+++++++.. .+|.|+|+ .+. ..-.+++..|-++||+|++ .+|. .|.+|...+
T Consensus 52 ~~~~~~ell~~~----~vD~V~I~-------tp~----~~H~~~~~~al~aGkhVl~---------EKPla~t~~ea~~l 107 (346)
T PRK11579 52 VVSEPQHLFNDP----NIDLIVIP-------TPN----DTHFPLAKAALEAGKHVVV---------DKPFTVTLSQAREL 107 (346)
T ss_pred eeCCHHHHhcCC----CCCEEEEc-------CCc----HHHHHHHHHHHHCCCeEEE---------eCCCCCCHHHHHHH
Confidence 467899998644 68999996 222 2345677778889999997 5665 356555555
Q ss_pred hhccccCcccccCC----ccHHHHHHHHHHHHHH
Q 006783 582 ASARRASCVMLNKG----KHVVEAVSTLDKILHI 611 (631)
Q Consensus 582 a~a~gaD~vmLskG----~ypveAV~~L~~Il~r 611 (631)
..+...-.+.|..| -+| +++.+.+++..
T Consensus 108 ~~~a~~~g~~l~v~~~~R~~p--~~~~~k~~i~~ 139 (346)
T PRK11579 108 DALAKSAGRVLSVFHNRRWDS--DFLTLKALLAE 139 (346)
T ss_pred HHHHHHhCCEEEEEeeccCCH--HHHHHHHHHhc
Confidence 44432223333322 233 56777777754
No 464
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=20.05 E-value=1e+03 Score=25.86 Aligned_cols=109 Identities=21% Similarity=0.170 Sum_probs=66.3
Q ss_pred EEeccCChhHHHHHHHHHHHhCCCCceEEEeecChhhhcchHHHHHHhhcCCCCcEEEEecCCcccccChhhHHHHHHHH
Q 006783 467 GISFVRDSCDIAMLRKELEKRKVQNLGVVLKIETKSGFERLPHILLEAMKSSNPLGVMIARGDLAVECGWERLADMQEEI 546 (631)
Q Consensus 467 ~~SFV~sa~Dv~~lr~~L~~~~~~~~~IiaKIEt~~av~NL~eIl~~a~~~~~~DGImIaRGDL~veig~e~l~~~Qk~I 546 (631)
++.-.+++++|.++++.. ++.||+|+=.-- +...+. +.++ |+|-| | ..|..-+ -.++
T Consensus 56 g~~Rm~~p~~I~aIk~~V------~iPVigk~Righ-~~Ea~~-L~~~----GvDiI-----D-~Te~lrp-----ad~~ 112 (293)
T PRK04180 56 GVARMADPKMIEEIMDAV------SIPVMAKARIGH-FVEAQI-LEAL----GVDYI-----D-ESEVLTP-----ADEE 112 (293)
T ss_pred CeeecCCHHHHHHHHHhC------CCCeEEeehhhH-HHHHHH-HHHc----CCCEE-----e-ccCCCCc-----hHHH
Confidence 566778899999887754 477887764322 333333 3333 67877 4 3332211 1133
Q ss_pred HHHHHh-cCCCEEEEechhhhhhhCCCCChhhHHhhhhc--cccCccccc----CCccHHHHHHHHHHHHHHHh
Q 006783 547 LSICGA-AHVPVIWATQVLESLVKFGVPTRAEITDVASA--RRASCVMLN----KGKHVVEAVSTLDKILHINT 613 (631)
Q Consensus 547 i~~c~a-agkPvi~ATQvLESM~~~~~PtRAEvtDva~a--~gaD~vmLs----kG~ypveAV~~L~~Il~r~e 613 (631)
+...+. .++|++. +.-|..| +-.+ .|+|+|--. .|+ .+|||+-|+.|...+.
T Consensus 113 ~~~~K~~f~~~fma-----------d~~~l~E---Alrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~ 171 (293)
T PRK04180 113 YHIDKWDFTVPFVC-----------GARNLGE---ALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIR 171 (293)
T ss_pred HHHHHHHcCCCEEc-----------cCCCHHH---HHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHH
Confidence 333333 4888874 3444444 4444 589888776 676 8999999999988754
Done!