BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006784
(631 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S8N9|GOGC1_ARATH Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2
Length = 707
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/648 (58%), Positives = 470/648 (72%), Gaps = 45/648 (6%)
Query: 1 MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS +GSQ K+ S+ +++
Sbjct: 1 MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSK---KKKLVK 57
Query: 61 DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
+ES D++ +Q+ S +V P+K + + ET ++G E T+ +
Sbjct: 58 EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 114
Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
S+PL+ +K D V E+ D D + +G+I NDS V PSP LP
Sbjct: 115 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 165
Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
KE+ +V + + DA + + D K +DS + A P VN + + +VK
Sbjct: 166 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 223
Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
V T +N +++Q +AD K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 224 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 283
Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS KSEVTKVES
Sbjct: 284 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 343
Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 344 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 403
Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK + E
Sbjct: 404 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 463
Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN 512
QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ IQ+QAWQDEV+RARQGQRDAE
Sbjct: 464 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 523
Query: 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572
KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 524 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 583
Query: 573 AAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEYVKIH 620
AAEFQLEKE+ RL E Q E E+SRVSRR+ ++WEED+E+K+LE + ++
Sbjct: 584 AAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLEPLPLY 631
>sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g0744400 PE=2 SV=1
Length = 709
Score = 544 bits (1402), Expect = e-154, Method: Compositional matrix adjust.
Identities = 289/410 (70%), Positives = 342/410 (83%), Gaps = 4/410 (0%)
Query: 216 NSESSLKDADVKVETLSNK----RKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKE 271
+++ S K D K E LS+ QQ K D K+QDQL+EA+GLLK + TGQSKE
Sbjct: 223 DTQVSGKSQDSKREGLSDSPESTENQQEHKLDSGSVKDQDQLEEARGLLKNVVKTGQSKE 282
Query: 272 ARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331
ARLARVCAGLSSRLQEYKSENAQLEELLV ERE SYEA +KQL+QELS+ + E ++ E
Sbjct: 283 ARLARVCAGLSSRLQEYKSENAQLEELLVQEREKCSSYEAHMKQLQQELSMSRVEGSRAE 342
Query: 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQAL 391
SN+ +AL AKN+EIE+LV S+D+ KK+AA SE LA+LQ +M+ + RNRELTETR+IQAL
Sbjct: 343 SNMVDALTAKNAEIESLVKSLDSWKKKAAASEEKLAALQEDMDGLKRNRELTETRVIQAL 402
Query: 392 REELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451
REELA+VERRAEEER AHNATKMAA+EREVELEHRA EAS ALARIQR AD+ +++A EL
Sbjct: 403 REELATVERRAEEERIAHNATKMAAVEREVELEHRAVEASNALARIQRAADQSSSRAMEL 462
Query: 452 EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAE 511
E KVA+LEVECA+LQQELQ+MEAR +R QKK EEANQ IQMQAWQ+EVERARQ QR+AE
Sbjct: 463 EHKVAVLEVECASLQQELQEMEARNRRAQKKPSEEANQVIQMQAWQEEVERARQSQREAE 522
Query: 512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEK 571
K+SSLEAE+QKMRVEMA MKRDAEHYSR+EH+ELEKRYRELTDLLY+KQTQLE+MASEK
Sbjct: 523 TKISSLEAELQKMRVEMAGMKRDAEHYSRQEHVELEKRYRELTDLLYHKQTQLESMASEK 582
Query: 572 AAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEYVKIHF 621
AA EFQLEK + + EVQ EAERSRV+RRS S+WEEDA++K+LE + +H
Sbjct: 583 AALEFQLEKSIKQFHEVQMEAERSRVARRSASAWEEDADIKALEPLPLHH 632
>sp|B0F9L7|GOGC2_ARATH Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1
Length = 668
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 91/186 (48%), Gaps = 25/186 (13%)
Query: 402 AEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVE 461
A+ E+ HN T+M + R LE AE + +LA Q+ + + + L+Q+V + E
Sbjct: 379 ADLEKQKHNNTRMEVLTRLAGLEAENAELTRSLAAGQKKLETQIDQVAVLKQQVELKEST 438
Query: 462 CATLQQELQDMEAR---LK-----RGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENK 513
L++ ++ R LK RG K + I + D++ R ++K
Sbjct: 439 LEELKRNTFNIGGRGTTLKQLDTSRGDKFEHQMLEAEISLLT--DKIGRL-------QDK 489
Query: 514 LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA 573
+ LEA+++ MR E+ E +EL++R +LTD L KQ+Q+E ++SEKA
Sbjct: 490 ATKLEADIEMMRKEL--------EEPTEVEIELKRRLNQLTDHLIQKQSQVEALSSEKAT 541
Query: 574 AEFQLE 579
F++E
Sbjct: 542 ILFRIE 547
>sp|Q6GNT7|GOGA5_XENLA Golgin subfamily A member 5 OS=Xenopus laevis GN=golga5 PE=2 SV=1
Length = 722
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 163/348 (46%), Gaps = 30/348 (8%)
Query: 253 LDEAQGLLKTTISTGQSKEARLARVCA----GLSSRLQEYKSENAQLEELLVAERELSRS 308
L EA LLK+ T +S + +R+ G S Q ++ +L E AE L R
Sbjct: 299 LQEADQLLKSRTETLESLQIEKSRILQDQSEGSSIHNQALQTMQERLRE---AESTLIRE 355
Query: 309 YEARIKQLEQELSVYKSEVTKVESNLAEA-LAAKNSEIETLVSSIDALKKQAALSEGNLA 367
E+ KQ++ E + S++ NLAEA + A+ +E S D L++Q S+ L
Sbjct: 356 QES-YKQIQNEFATRLSKIEAERQNLAEAVILAEKKHMEEKRKS-DDLQQQLKTSKVGLD 413
Query: 368 SLQMNMESIMRNRELTETRMIQALREELASV-ERRAEEERAAHNATKMAAMEREVELEHR 426
SL+ M + TR++Q+ + + S+ E E +H+A+ M ELE
Sbjct: 414 SLKQEMADYKQK----ATRILQSKEKLINSLKEGSGIEGLDSHSASTM-------ELEEM 462
Query: 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEV-ECATLQQELQDMEARLKRGQKKSPE 485
E M IQ++ + EL Q V +V E + +++LQD+ + Q+ E
Sbjct: 463 RHERDMQREEIQKLMGQIQQLKAEL-QDVETQQVSEAESAREQLQDVHEQFATQQRAKQE 521
Query: 486 -EANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHM 544
EA Q Q +Q E + + + ++ E E+QK+R ++ + S
Sbjct: 522 LEAELERQKQEFQYIQEDLYKTKNTLQGRIRDREDEIQKLRNQLTN-----KALSSSSQT 576
Query: 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEA 592
ELE R +LT+ L KQT LE +++EK + +QLE+ ++L+ VQ +
Sbjct: 577 ELENRLHQLTETLIQKQTMLENLSTEKNSLVYQLERLEHQLKNVQGSS 624
>sp|Q8TBA6|GOGA5_HUMAN Golgin subfamily A member 5 OS=Homo sapiens GN=GOLGA5 PE=1 SV=3
Length = 731
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 139/296 (46%), Gaps = 37/296 (12%)
Query: 296 EELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355
E L A+ L R E+ KQ++ E + ++V NLAEA+ + +D L
Sbjct: 352 ERLHEADATLKREQES-YKQMQSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDEL 410
Query: 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA 415
++Q L + NL S + + + TR++Q+ + + S++ + E +++ +
Sbjct: 411 QQQVKLYKLNLESSKQELIDYKQK----ATRILQSKEKLINSLKEGSGFE--GLDSSTAS 464
Query: 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475
+ME E EL H E M IQ++ + EL+ A E + +++LQD+ +
Sbjct: 465 SMELE-ELRH---EKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQ 520
Query: 476 LKRGQKKSPEEANQAIQMQAWQDEVERARQ-----------GQRDAENKLSSLEAEVQKM 524
+ GQK S +E + E+ER +Q + ++++ + E+QK+
Sbjct: 521 IA-GQKASKQE---------LETELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKL 570
Query: 525 RVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK 580
R ++ + S ELE R +LT+ L KQT LE++++EK + FQLE+
Sbjct: 571 RNQLTN-----KTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLER 621
>sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus GN=Golga5 PE=1 SV=2
Length = 729
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 40/143 (27%)
Query: 465 LQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKM 524
L+ ELQDMEA+ Q E A + Q+Q QD++ + R +++ LE E+++M
Sbjct: 490 LRSELQDMEAQ----QVSEAESARE--QLQDLQDQIAKQRTSKQE-------LETELERM 536
Query: 525 RVEMAAMKRDAEHYS---------REEHM------------------ELEKRYRELTDLL 557
+ E M+ D REE + ELE R +LT+ L
Sbjct: 537 KQEFRYMEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQSELESRLHQLTETL 596
Query: 558 YYKQTQLETMASEKAAAEFQLEK 580
KQT LE++++EK + FQLE+
Sbjct: 597 IQKQTMLESLSTEKNSLVFQLER 619
>sp|Q3ZU82|GOGA5_RAT Golgin subfamily A member 5 OS=Rattus norvegicus GN=Golga5 PE=1
SV=1
Length = 728
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 36/141 (25%)
Query: 465 LQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSL------- 517
L+ ELQDMEA+ Q E A + Q+Q QD++ + R +++ E +L +
Sbjct: 489 LRSELQDMEAQ----QVSEAESARE--QLQDLQDQIAKQRASKQELETELDRMKQEFHYV 542
Query: 518 ------------------EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYY 559
E E+QK+R ++ + S ELE R +LT+ L
Sbjct: 543 EEDLHRTKNTLQSRIKDREEEIQKLRNQLTN-----KTLSNSSQSELESRLHQLTETLIQ 597
Query: 560 KQTQLETMASEKAAAEFQLEK 580
KQT LE++++EK + FQLE+
Sbjct: 598 KQTLLESLSTEKNSLVFQLER 618
>sp|Q7SXE4|GOGA5_DANRE Golgin subfamily A member 5 OS=Danio rerio GN=golga5 PE=2 SV=1
Length = 760
Score = 40.0 bits (92), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 518 EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577
E E+QK+R ++ + S ELE R +LT+ L KQT LE + +EK + FQ
Sbjct: 594 EDEIQKLRNQLTN-----KALSNSSQAELEGRLHQLTETLIQKQTMLEALGTEKNSLVFQ 648
Query: 578 LEKEMNRLQEVQS 590
LE+ +L+ +Q
Sbjct: 649 LERLEQQLKSLQG 661
>sp|Q90631|KTN1_CHICK Kinectin OS=Gallus gallus GN=KTN1 PE=1 SV=1
Length = 1364
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 75/141 (53%), Gaps = 18/141 (12%)
Query: 439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQD 498
++ +++ +A EL +L++EC + L + E L+R Q+ EE ++ W+
Sbjct: 1122 KVMEQKLKEAEELH---ILLQLECEKYKSVLAETEGILQRLQRSVEEEESK------WKI 1172
Query: 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMA---AMKRDAEHYSRE-EHMELEK-----R 549
+VE +++ + + ++SLE EV++++ E+ +K++ EH E E E+E+
Sbjct: 1173 KVEESQKELKQMRSSVASLEHEVERLKEEIKEVETLKKEREHLESELEKAEIERSTYVSE 1232
Query: 550 YRELTDLLYYKQTQLETMASE 570
REL DLL Q +L+ SE
Sbjct: 1233 VRELKDLLTELQKKLDDSYSE 1253
>sp|Q9UPN4|AZI1_HUMAN 5-azacytidine-induced protein 1 OS=Homo sapiens GN=AZI1 PE=1 SV=3
Length = 1083
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 89/173 (51%), Gaps = 24/173 (13%)
Query: 418 EREVELEHRAAEASMALA----------RIQRIADERTAKAGELEQKVAMLEVECATLQQ 467
++E+EL EA MALA RI+R+ D+ A+ ELEQ L+ C+ L+
Sbjct: 897 DKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKG 956
Query: 468 ELQDMEAR------LKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEV 521
+L + E L R ++++ E+A QA+ Q + A+ +++ E++L++ E E
Sbjct: 957 QLGEAEGENLRLQGLVRQKERALEDA-QAVNEQLSSERSNLAQVIRQEFEDRLAASEEET 1015
Query: 522 QKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAA 574
++ + E+A ++ + +ELE+ +R + L K+ + ++ ++ AA
Sbjct: 1016 RQAKAELATLQ-------ARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAA 1061
>sp|O14578|CTRO_HUMAN Citron Rho-interacting kinase OS=Homo sapiens GN=CIT PE=1 SV=2
Length = 2027
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 138/318 (43%), Gaps = 62/318 (19%)
Query: 339 AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM--IQALREELA 396
+ N EI L S +D L+++ E L S + ME++ + E ++ ++AL +EL
Sbjct: 978 SGANDEIVQLRSEVDHLRREITEREMQLTSQKQTMEALKTTCTMLEEQVMDLEALNDELL 1037
Query: 397 SVERRAEEERAAHNATK------------MAAMERE---------------VEL---EHR 426
ER+ E R+ K M E++ VEL EH+
Sbjct: 1038 EKERQWEAWRSVLGDEKSQFECRVRELQRMLDTEKQSRARADQRITESRQVVELAVKEHK 1097
Query: 427 AAEASM--ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP 484
A ++ AL + A+ + K +LE+K AMLE+ +LQQ+L + E LK Q+
Sbjct: 1098 AEILALQQALKEQKLKAESLSDKLNDLEKKHAMLEMNARSLQQKL-ETERELK--QRLLE 1154
Query: 485 EEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHM 544
E+A QM ++ + R QG ++A ++ L+ E + ++ ++ H E +
Sbjct: 1155 EQAKLQQQMDLQKNHIFRLTQGLQEALDRADLLKTERSDLEYQLENIQVLYSH----EKV 1210
Query: 545 ELEKRYRELTDLLYYKQTQLETMASEKAA---------------------AEFQLEKEMN 583
++E + T L+ + Q +++ A +K + LEKE
Sbjct: 1211 KMEGTISQQTKLIDFLQAKMDQPAKKKKGLFSRRKEDPALPTQVPLQYNELKLALEKEKA 1270
Query: 584 RLQEVQSEAERSRVSRRS 601
R E++ +++R+ RS
Sbjct: 1271 RCAELEEALQKTRIELRS 1288
>sp|O95613|PCNT_HUMAN Pericentrin OS=Homo sapiens GN=PCNT PE=1 SV=4
Length = 3336
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 390 ALRE-ELASVERRAEEERAAHNATKMAAMEREVEL----EHRAAEAS------MALARIQ 438
ALRE E+ + R +E AA A + ER +E+ + +AA ++ +ALARI+
Sbjct: 1843 ALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEAVLLALARIR 1902
Query: 439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480
R +++ AG ++ L +CA L ++LQ + R R Q
Sbjct: 1903 RALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLRCQ 1944
>sp|Q5RI56|OPTN_DANRE Optineurin OS=Danio rerio GN=optn PE=2 SV=2
Length = 517
Score = 32.7 bits (73), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 458 LEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSL 517
L+ C L+Q+L ++ +L QK E +QM++ Q ++ ++ +D +N L+ L
Sbjct: 271 LQDRCKDLEQDLGTLKTQLGDKQKVQAENDCLKVQMESLQAAIKLEQKKTQDEKNNLNQL 330
Query: 518 EAEVQKMRVEMAAM----KRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA 573
+ K+ + + + K+ S++++ EL+ R+ L KQ +++ M E
Sbjct: 331 KDAYTKLFEDYSELQEEKKKRESCVSKDDYDELQTRFATAEKALADKQQKIDEMKMEL-- 388
Query: 574 AEFQLEKEMNRLQEVQSEAE 593
FQ EK++ + Q++AE
Sbjct: 389 --FQKEKDLETISVFQAQAE 406
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.121 0.316
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,449,700
Number of Sequences: 539616
Number of extensions: 8143652
Number of successful extensions: 56226
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 3696
Number of HSP's that attempted gapping in prelim test: 40542
Number of HSP's gapped (non-prelim): 11314
length of query: 631
length of database: 191,569,459
effective HSP length: 124
effective length of query: 507
effective length of database: 124,657,075
effective search space: 63201137025
effective search space used: 63201137025
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 64 (29.3 bits)