Query 006784
Match_columns 631
No_of_seqs 37 out of 39
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 14:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09787 Golgin_A5: Golgin sub 99.9 4.9E-26 1.1E-30 243.1 25.7 289 332-625 93-467 (511)
2 KOG4677 Golgi integral membran 99.9 1.3E-19 2.9E-24 192.0 27.3 261 305-586 133-469 (554)
3 KOG0161 Myosin class II heavy 98.6 0.0014 3E-08 81.5 43.2 338 248-596 1041-1427(1930)
4 PF07888 CALCOCO1: Calcium bin 98.6 0.0007 1.5E-08 75.5 36.9 79 248-333 150-228 (546)
5 TIGR02169 SMC_prok_A chromosom 98.5 0.0045 9.7E-08 70.9 44.3 42 546-587 453-494 (1164)
6 KOG0161 Myosin class II heavy 98.3 0.014 3.1E-07 72.9 43.0 324 267-591 1194-1548(1930)
7 TIGR02168 SMC_prok_B chromosom 98.2 0.022 4.7E-07 65.0 44.3 29 268-296 178-206 (1179)
8 TIGR00606 rad50 rad50. This fa 98.1 0.059 1.3E-06 65.2 40.2 62 313-376 794-855 (1311)
9 PF07888 CALCOCO1: Calcium bin 98.1 0.041 9E-07 61.9 42.1 54 270-323 151-204 (546)
10 TIGR02169 SMC_prok_A chromosom 98.0 0.055 1.2E-06 62.3 43.8 23 271-293 186-208 (1164)
11 PRK02224 chromosome segregatio 98.0 0.052 1.1E-06 62.0 44.0 27 448-474 532-558 (880)
12 PF12128 DUF3584: Protein of u 98.0 0.096 2.1E-06 63.1 43.1 41 496-536 495-535 (1201)
13 PF00038 Filament: Intermediat 97.8 0.057 1.2E-06 54.5 35.8 200 252-475 22-252 (312)
14 PF10174 Cast: RIM-binding pro 97.8 0.16 3.5E-06 59.3 37.0 91 307-408 318-421 (775)
15 PRK02224 chromosome segregatio 97.7 0.2 4.4E-06 57.4 46.0 46 544-589 512-557 (880)
16 PF00261 Tropomyosin: Tropomyo 97.6 0.1 2.3E-06 52.0 26.9 56 422-477 96-151 (237)
17 PF05701 WEMBL: Weak chloropla 97.5 0.23 5E-06 55.1 39.7 186 332-536 200-389 (522)
18 PF00038 Filament: Intermediat 97.5 0.13 2.8E-06 52.0 35.7 98 306-408 49-146 (312)
19 PF05701 WEMBL: Weak chloropla 97.4 0.32 6.9E-06 54.0 41.7 353 222-596 8-406 (522)
20 PF15070 GOLGA2L5: Putative go 97.4 0.44 9.5E-06 54.5 34.1 201 253-469 13-225 (617)
21 PF09726 Macoilin: Transmembra 97.4 0.5 1.1E-05 54.7 32.7 73 251-323 421-507 (697)
22 PF10174 Cast: RIM-binding pro 97.3 0.58 1.3E-05 54.9 42.0 230 306-537 240-490 (775)
23 PRK09039 hypothetical protein; 97.3 0.021 4.6E-07 60.2 18.9 61 273-333 43-103 (343)
24 KOG4674 Uncharacterized conser 97.3 1 2.2E-05 56.9 43.0 255 332-590 195-503 (1822)
25 COG1196 Smc Chromosome segrega 97.3 0.75 1.6E-05 55.4 43.9 34 542-582 971-1004(1163)
26 PRK04863 mukB cell division pr 97.2 1.2 2.6E-05 55.6 36.0 54 277-330 287-340 (1486)
27 PRK11637 AmiB activator; Provi 97.0 0.51 1.1E-05 50.6 26.4 40 281-320 45-84 (428)
28 COG1196 Smc Chromosome segrega 97.0 1.3 2.9E-05 53.4 42.9 45 332-376 242-286 (1163)
29 COG4942 Membrane-bound metallo 96.9 0.76 1.6E-05 50.7 26.3 183 283-469 38-247 (420)
30 KOG0996 Structural maintenance 96.9 1.3 2.9E-05 53.9 30.0 189 252-478 782-974 (1293)
31 PF15619 Lebercilin: Ciliary p 96.8 0.56 1.2E-05 46.5 22.6 177 264-473 7-191 (194)
32 PF09730 BicD: Microtubule-ass 96.8 1.6 3.6E-05 50.9 39.6 330 253-587 15-465 (717)
33 PRK11637 AmiB activator; Provi 96.8 1 2.2E-05 48.4 27.9 8 395-402 164-171 (428)
34 PF12128 DUF3584: Protein of u 96.8 2.2 4.9E-05 51.8 43.6 66 259-324 473-538 (1201)
35 PRK09039 hypothetical protein; 96.6 0.49 1.1E-05 50.2 22.1 55 422-476 113-167 (343)
36 KOG0977 Nuclear envelope prote 96.6 2 4.3E-05 49.0 27.8 94 306-399 108-217 (546)
37 KOG0612 Rho-associated, coiled 96.6 3.1 6.7E-05 51.1 31.8 199 246-471 541-739 (1317)
38 KOG0994 Extracellular matrix g 96.2 4.8 0.0001 49.6 30.1 76 385-480 1597-1677(1758)
39 KOG0612 Rho-associated, coiled 96.2 5 0.00011 49.4 42.1 27 297-323 501-527 (1317)
40 KOG4674 Uncharacterized conser 96.2 6.2 0.00013 50.4 41.1 71 301-371 795-865 (1822)
41 KOG0995 Centromere-associated 96.1 3.5 7.6E-05 47.2 37.4 287 268-573 220-571 (581)
42 KOG1029 Endocytic adaptor prot 96.1 4.5 9.8E-05 48.1 31.7 36 562-597 570-605 (1118)
43 KOG0250 DNA repair protein RAD 96.1 3.6 7.8E-05 50.0 27.2 92 386-477 295-389 (1074)
44 PF09726 Macoilin: Transmembra 96.1 4.1 8.9E-05 47.5 29.2 31 446-476 545-575 (697)
45 TIGR00606 rad50 rad50. This fa 96.0 5.8 0.00013 48.7 46.3 43 258-300 220-262 (1311)
46 TIGR01005 eps_transp_fam exopo 96.0 1.6 3.5E-05 49.7 23.1 46 426-471 289-334 (754)
47 KOG4643 Uncharacterized coiled 95.9 5.9 0.00013 48.1 37.6 306 256-571 171-573 (1195)
48 KOG0933 Structural maintenance 95.9 6.4 0.00014 47.9 31.7 122 350-474 708-836 (1174)
49 TIGR02680 conserved hypothetic 95.9 7.2 0.00016 48.4 29.5 8 150-157 636-643 (1353)
50 PF09755 DUF2046: Uncharacteri 95.8 3.6 7.7E-05 44.1 28.7 39 489-527 227-269 (310)
51 KOG4673 Transcription factor T 95.7 6.1 0.00013 46.5 29.7 72 497-568 865-938 (961)
52 TIGR01005 eps_transp_fam exopo 95.6 2.8 6.1E-05 47.9 22.9 114 359-477 290-407 (754)
53 PF15619 Lebercilin: Ciliary p 95.5 3.1 6.6E-05 41.5 20.1 157 437-593 3-174 (194)
54 PF08614 ATG16: Autophagy prot 95.5 0.075 1.6E-06 51.5 8.8 140 449-591 27-173 (194)
55 PF01576 Myosin_tail_1: Myosin 95.4 0.0042 9.1E-08 72.2 0.0 289 246-535 104-435 (859)
56 PHA02562 46 endonuclease subun 95.3 5.5 0.00012 43.4 28.7 65 343-408 213-277 (562)
57 PF00261 Tropomyosin: Tropomyo 95.3 3.7 8E-05 41.2 30.7 124 423-555 111-236 (237)
58 COG4942 Membrane-bound metallo 95.2 6.5 0.00014 43.7 27.0 198 262-466 45-251 (420)
59 PF08614 ATG16: Autophagy prot 94.9 0.15 3.3E-06 49.4 8.9 101 267-378 79-179 (194)
60 PF01576 Myosin_tail_1: Myosin 94.9 0.0075 1.6E-07 70.2 0.0 66 262-327 18-83 (859)
61 PF13514 AAA_27: AAA domain 94.8 13 0.00028 45.0 39.3 174 410-593 528-704 (1111)
62 TIGR02680 conserved hypothetic 94.8 15 0.00033 45.7 33.5 122 269-402 735-860 (1353)
63 PRK04863 mukB cell division pr 94.6 18 0.00039 45.8 37.4 48 334-381 440-487 (1486)
64 COG1579 Zn-ribbon protein, pos 94.6 3.6 7.9E-05 42.5 18.2 93 437-537 43-135 (239)
65 PRK11281 hypothetical protein; 94.5 17 0.00037 44.8 29.8 56 421-476 208-264 (1113)
66 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.4 4.1 9E-05 37.6 17.6 116 342-465 16-131 (132)
67 TIGR03007 pepcterm_ChnLen poly 94.2 10 0.00022 41.1 23.6 129 434-591 256-384 (498)
68 TIGR01843 type_I_hlyD type I s 94.1 8.1 0.00018 39.9 23.6 33 441-473 153-185 (423)
69 KOG0971 Microtubule-associated 94.1 18 0.0004 44.0 42.1 88 283-379 255-354 (1243)
70 TIGR01843 type_I_hlyD type I s 94.1 8.3 0.00018 39.9 20.3 32 445-476 245-276 (423)
71 PHA02562 46 endonuclease subun 94.0 11 0.00024 41.0 26.7 29 546-574 370-398 (562)
72 TIGR03007 pepcterm_ChnLen poly 93.9 11 0.00025 40.7 24.4 56 268-329 167-222 (498)
73 PF07111 HCR: Alpha helical co 93.6 20 0.00042 42.5 23.6 128 332-473 524-652 (739)
74 KOG0250 DNA repair protein RAD 93.5 24 0.00053 43.3 29.1 217 252-480 208-435 (1074)
75 KOG0933 Structural maintenance 93.2 27 0.00058 43.0 31.4 99 437-538 841-939 (1174)
76 TIGR01010 BexC_CtrB_KpsE polys 92.8 14 0.00031 38.7 19.5 127 445-593 169-309 (362)
77 PF12718 Tropomyosin_1: Tropom 92.8 9.1 0.0002 36.4 19.0 88 388-477 51-139 (143)
78 PF05622 HOOK: HOOK protein; 92.7 0.032 6.9E-07 63.4 0.0 208 259-473 271-522 (713)
79 PF13514 AAA_27: AAA domain 92.6 31 0.00066 41.9 39.3 260 307-588 683-976 (1111)
80 PRK11281 hypothetical protein; 92.5 34 0.00074 42.3 29.3 41 548-588 285-325 (1113)
81 PRK03918 chromosome segregatio 92.4 25 0.00055 40.6 41.1 25 449-473 401-425 (880)
82 PF05557 MAD: Mitotic checkpoi 92.4 1 2.2E-05 51.7 11.2 34 445-478 502-535 (722)
83 KOG0980 Actin-binding protein 92.0 35 0.00076 41.4 35.8 41 435-475 476-516 (980)
84 PRK03918 chromosome segregatio 92.0 28 0.00061 40.2 44.7 31 544-574 669-699 (880)
85 TIGR03017 EpsF chain length de 91.7 21 0.00045 38.1 25.4 204 256-478 150-374 (444)
86 PF08317 Spc7: Spc7 kinetochor 91.6 17 0.00038 38.2 18.3 127 270-404 143-269 (325)
87 PF05557 MAD: Mitotic checkpoi 91.2 0.2 4.3E-06 57.2 4.0 50 333-382 340-389 (722)
88 KOG0971 Microtubule-associated 91.0 46 0.001 40.8 31.0 126 309-475 229-354 (1243)
89 PF13851 GAS: Growth-arrest sp 90.6 20 0.00043 35.8 22.6 75 496-570 98-172 (201)
90 PF12718 Tropomyosin_1: Tropom 90.6 16 0.00035 34.7 18.4 20 385-404 79-98 (143)
91 PF09755 DUF2046: Uncharacteri 89.6 34 0.00073 37.0 28.1 215 252-476 31-252 (310)
92 COG3206 GumC Uncharacterized p 89.1 38 0.00082 36.9 20.7 25 384-408 244-268 (458)
93 KOG0977 Nuclear envelope prote 89.0 50 0.0011 38.2 36.0 209 289-501 41-259 (546)
94 KOG0980 Actin-binding protein 88.4 69 0.0015 39.1 28.0 142 441-586 412-567 (980)
95 TIGR03017 EpsF chain length de 87.5 43 0.00094 35.7 24.9 99 306-408 173-276 (444)
96 PF15070 GOLGA2L5: Putative go 87.2 66 0.0014 37.5 33.9 55 342-396 35-90 (617)
97 KOG4673 Transcription factor T 87.0 77 0.0017 38.0 36.7 30 264-293 411-440 (961)
98 PF12761 End3: Actin cytoskele 87.0 5.4 0.00012 40.4 10.0 95 420-525 98-194 (195)
99 KOG2991 Splicing regulator [RN 86.9 26 0.00056 37.5 15.2 27 150-176 26-52 (330)
100 PRK10476 multidrug resistance 85.7 41 0.00089 35.0 16.0 32 448-479 116-147 (346)
101 COG1579 Zn-ribbon protein, pos 85.5 50 0.0011 34.5 21.2 97 306-405 54-150 (239)
102 KOG0994 Extracellular matrix g 85.3 1.2E+02 0.0025 38.6 36.3 38 549-586 1711-1748(1758)
103 PF04156 IncA: IncA protein; 85.0 36 0.00079 32.4 15.5 54 423-476 79-132 (191)
104 PRK04778 septation ring format 85.0 75 0.0016 36.0 34.0 135 347-485 307-444 (569)
105 TIGR01010 BexC_CtrB_KpsE polys 83.8 43 0.00093 35.2 15.3 130 345-480 172-312 (362)
106 PF04012 PspA_IM30: PspA/IM30 83.5 47 0.001 32.6 22.1 78 292-369 32-110 (221)
107 PF00769 ERM: Ezrin/radixin/mo 82.9 60 0.0013 33.3 17.8 112 446-582 5-116 (246)
108 PRK10698 phage shock protein P 82.9 57 0.0012 33.0 21.4 55 292-346 33-87 (222)
109 PF04849 HAP1_N: HAP1 N-termin 82.6 39 0.00086 36.4 14.5 69 252-323 171-253 (306)
110 TIGR03185 DNA_S_dndD DNA sulfu 82.4 99 0.0022 35.5 34.0 29 512-540 391-419 (650)
111 PF12325 TMF_TATA_bd: TATA ele 82.3 16 0.00034 34.3 10.2 76 494-569 19-103 (120)
112 KOG2129 Uncharacterized conser 81.5 43 0.00094 37.9 14.7 72 483-562 245-320 (552)
113 PRK09841 cryptic autophosphory 81.3 1E+02 0.0022 36.0 18.4 29 448-476 269-297 (726)
114 PF04111 APG6: Autophagy prote 80.8 26 0.00057 37.1 12.5 77 457-537 13-89 (314)
115 PF15254 CCDC14: Coiled-coil d 80.7 1E+02 0.0022 37.4 18.0 45 15-59 12-60 (861)
116 PF00769 ERM: Ezrin/radixin/mo 80.2 59 0.0013 33.4 14.4 105 422-527 9-118 (246)
117 PF04156 IncA: IncA protein; 80.0 55 0.0012 31.2 13.3 20 274-293 93-112 (191)
118 PF12795 MscS_porin: Mechanose 79.8 71 0.0015 32.1 19.3 130 423-561 83-212 (240)
119 PF10498 IFT57: Intra-flagella 79.2 63 0.0014 35.2 14.9 87 385-476 265-351 (359)
120 smart00787 Spc7 Spc7 kinetocho 79.2 95 0.0021 33.2 17.8 121 274-403 142-263 (312)
121 PRK15178 Vi polysaccharide exp 78.9 1.2E+02 0.0026 34.2 19.1 112 384-503 240-363 (434)
122 PF11559 ADIP: Afadin- and alp 78.1 32 0.0007 32.0 10.9 97 250-353 54-150 (151)
123 PF10473 CENP-F_leu_zip: Leuci 78.0 69 0.0015 31.0 18.6 38 439-476 10-47 (140)
124 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.7 60 0.0013 30.1 16.3 11 544-554 108-118 (132)
125 PRK10884 SH3 domain-containing 77.0 17 0.00038 36.6 9.4 54 248-301 97-150 (206)
126 PF10498 IFT57: Intra-flagella 76.5 76 0.0016 34.7 14.6 128 272-399 198-348 (359)
127 PF04849 HAP1_N: HAP1 N-termin 76.4 67 0.0015 34.7 13.9 51 517-567 246-302 (306)
128 PRK10884 SH3 domain-containing 76.4 19 0.0004 36.4 9.4 36 342-377 131-166 (206)
129 PF09730 BicD: Microtubule-ass 75.3 1.9E+02 0.0041 34.7 20.1 144 423-585 39-182 (717)
130 PF10186 Atg14: UV radiation r 75.2 91 0.002 31.0 17.9 75 497-572 69-143 (302)
131 PF14915 CCDC144C: CCDC144C pr 75.0 1.3E+02 0.0028 32.7 25.2 188 268-477 48-245 (305)
132 PF07111 HCR: Alpha helical co 75.0 2E+02 0.0042 34.7 40.4 130 342-471 262-419 (739)
133 KOG1003 Actin filament-coating 75.0 1.1E+02 0.0023 31.7 21.1 83 388-477 62-147 (205)
134 PF05622 HOOK: HOOK protein; 74.6 0.98 2.1E-05 51.8 0.0 61 307-379 287-347 (713)
135 smart00787 Spc7 Spc7 kinetocho 74.4 50 0.0011 35.3 12.4 45 250-294 146-190 (312)
136 TIGR00998 8a0101 efflux pump m 72.8 1.2E+02 0.0025 31.0 16.1 32 449-480 111-142 (334)
137 PF05278 PEARLI-4: Arabidopsis 72.1 1.2E+02 0.0026 32.4 14.3 57 427-483 209-265 (269)
138 TIGR03185 DNA_S_dndD DNA sulfu 70.2 2.1E+02 0.0045 33.0 35.3 43 494-536 424-466 (650)
139 KOG3850 Predicted membrane pro 70.1 2E+02 0.0043 32.6 17.1 114 384-536 258-375 (455)
140 PF07200 Mod_r: Modifier of ru 69.4 71 0.0015 29.6 10.9 106 292-405 6-111 (150)
141 COG3206 GumC Uncharacterized p 69.4 1.8E+02 0.0039 31.8 22.5 164 310-474 238-401 (458)
142 KOG4807 F-actin binding protei 69.4 2.1E+02 0.0046 32.6 25.1 52 509-560 516-584 (593)
143 PF06160 EzrA: Septation ring 69.3 2.1E+02 0.0046 32.7 32.2 134 351-488 307-443 (560)
144 PRK15178 Vi polysaccharide exp 69.1 2.1E+02 0.0045 32.4 16.9 127 449-597 245-379 (434)
145 KOG1853 LIS1-interacting prote 68.9 1.7E+02 0.0038 31.5 19.2 149 306-473 22-184 (333)
146 PF05667 DUF812: Protein of un 68.9 2.4E+02 0.0051 33.0 23.2 92 432-536 394-485 (594)
147 PRK10361 DNA recombination pro 67.9 2.3E+02 0.0049 32.5 22.1 84 388-479 76-159 (475)
148 PF15294 Leu_zip: Leucine zipp 66.8 77 0.0017 33.9 11.6 104 250-353 134-277 (278)
149 TIGR01000 bacteriocin_acc bact 66.1 2.1E+02 0.0045 31.4 22.9 29 450-478 288-316 (457)
150 PF06005 DUF904: Protein of un 65.9 37 0.0008 29.4 7.6 59 422-480 8-66 (72)
151 KOG1937 Uncharacterized conser 65.8 2.6E+02 0.0056 32.3 24.6 136 442-587 289-428 (521)
152 KOG0963 Transcription factor/C 64.8 3E+02 0.0064 32.7 22.0 51 3-64 11-61 (629)
153 PRK11519 tyrosine kinase; Prov 64.8 2.8E+02 0.0061 32.4 17.3 51 448-505 334-384 (719)
154 TIGR02977 phageshock_pspA phag 64.0 1.6E+02 0.0035 29.4 22.1 54 294-347 35-88 (219)
155 PF09304 Cortex-I_coil: Cortex 62.4 1.4E+02 0.0031 28.1 11.3 68 262-329 9-76 (107)
156 PF12004 DUF3498: Domain of un 62.2 2.5 5.5E-05 47.6 0.0 66 385-452 407-478 (495)
157 KOG0018 Structural maintenance 62.0 4.2E+02 0.0091 33.5 23.8 131 342-472 316-470 (1141)
158 PF06818 Fez1: Fez1; InterPro 61.7 2E+02 0.0043 29.6 22.5 102 338-472 5-106 (202)
159 PRK15422 septal ring assembly 61.3 45 0.00099 29.8 7.4 40 256-295 19-58 (79)
160 PRK11519 tyrosine kinase; Prov 61.1 3.3E+02 0.0071 31.9 18.2 32 560-591 368-399 (719)
161 PF05911 DUF869: Plant protein 59.8 3.9E+02 0.0085 32.4 27.0 39 500-538 178-226 (769)
162 PF13851 GAS: Growth-arrest sp 59.6 2E+02 0.0043 28.9 16.4 36 264-299 29-64 (201)
163 KOG0288 WD40 repeat protein Ti 59.5 2.1E+02 0.0045 32.7 13.7 41 342-382 33-73 (459)
164 PF04048 Sec8_exocyst: Sec8 ex 59.1 1.2E+02 0.0025 28.7 10.3 87 280-392 37-127 (142)
165 KOG0978 E3 ubiquitin ligase in 58.9 3.9E+02 0.0085 32.2 35.6 115 410-543 499-625 (698)
166 PF09738 DUF2051: Double stran 58.6 2.7E+02 0.0057 30.1 15.7 180 398-591 1-248 (302)
167 TIGR00618 sbcc exonuclease Sbc 58.5 4.2E+02 0.0091 32.3 36.2 44 543-586 439-483 (1042)
168 KOG0982 Centrosomal protein Nu 58.2 3.4E+02 0.0074 31.2 27.4 141 225-369 152-333 (502)
169 PF10481 CENP-F_N: Cenp-F N-te 58.2 2.8E+02 0.006 30.2 15.5 104 492-598 19-131 (307)
170 PRK09841 cryptic autophosphory 57.5 3.8E+02 0.0082 31.5 16.2 53 447-506 333-385 (726)
171 PF04880 NUDE_C: NUDE protein, 56.8 16 0.00034 36.2 4.4 38 487-535 9-47 (166)
172 KOG3809 Microtubule-binding pr 56.8 3.7E+02 0.008 31.2 16.5 53 278-330 509-572 (583)
173 PF06005 DUF904: Protein of un 56.8 71 0.0015 27.7 7.8 32 265-296 7-38 (72)
174 PRK10929 putative mechanosensi 55.8 5.2E+02 0.011 32.6 30.2 42 548-589 265-306 (1109)
175 COG1842 PspA Phage shock prote 55.7 2.5E+02 0.0055 28.9 22.5 80 257-346 8-87 (225)
176 PF00901 Orbi_VP5: Orbivirus o 55.6 3.9E+02 0.0084 31.1 17.1 68 341-408 138-205 (508)
177 PF06818 Fez1: Fez1; InterPro 55.3 2.6E+02 0.0055 28.9 20.0 108 306-417 33-162 (202)
178 PF09486 HrpB7: Bacterial type 55.3 2.2E+02 0.0048 28.1 14.5 104 416-535 13-116 (158)
179 PRK03598 putative efflux pump 55.2 2.3E+02 0.0049 29.4 12.6 26 449-474 181-206 (331)
180 KOG4809 Rab6 GTPase-interactin 54.9 4.3E+02 0.0093 31.3 22.4 190 342-535 249-461 (654)
181 PF11932 DUF3450: Protein of u 54.4 2.5E+02 0.0054 28.5 15.3 51 264-314 44-94 (251)
182 COG3074 Uncharacterized protei 54.4 59 0.0013 28.9 6.9 58 255-312 18-75 (79)
183 COG2433 Uncharacterized conser 54.3 1.3E+02 0.0029 35.5 11.6 31 340-370 478-508 (652)
184 PRK15136 multidrug efflux syst 54.3 3.1E+02 0.0068 29.6 16.0 28 451-478 125-152 (390)
185 COG2433 Uncharacterized conser 53.1 1.5E+02 0.0033 35.0 11.8 88 492-590 423-512 (652)
186 TIGR02231 conserved hypothetic 52.7 1.2E+02 0.0025 33.9 10.7 46 333-378 128-173 (525)
187 PF14362 DUF4407: Domain of un 52.3 1.8E+02 0.0039 30.0 11.3 79 550-629 184-266 (301)
188 PF09787 Golgin_A5: Golgin sub 51.9 4E+02 0.0087 30.1 24.6 25 508-532 358-382 (511)
189 PF02403 Seryl_tRNA_N: Seryl-t 51.6 1.5E+02 0.0032 26.2 9.2 69 309-378 34-102 (108)
190 PRK10246 exonuclease subunit S 51.6 5.5E+02 0.012 31.7 39.7 36 438-473 716-751 (1047)
191 PF05103 DivIVA: DivIVA protei 50.6 7.8 0.00017 34.6 1.1 99 427-537 27-125 (131)
192 PF09304 Cortex-I_coil: Cortex 50.3 2.3E+02 0.0049 26.8 10.6 69 333-409 13-81 (107)
193 PF02050 FliJ: Flagellar FliJ 50.1 1.5E+02 0.0033 24.8 14.7 85 446-535 5-89 (123)
194 KOG0243 Kinesin-like protein [ 48.7 4.2E+02 0.0091 33.3 14.9 112 471-582 382-517 (1041)
195 PRK09343 prefoldin subunit bet 48.4 2.3E+02 0.005 26.3 11.8 52 332-383 67-118 (121)
196 PF12325 TMF_TATA_bd: TATA ele 48.2 2.4E+02 0.0053 26.6 13.0 34 342-375 74-107 (120)
197 PF05010 TACC: Transforming ac 48.2 3.2E+02 0.007 28.0 24.4 186 333-560 6-204 (207)
198 PF09728 Taxilin: Myosin-like 48.1 3.8E+02 0.0081 28.7 35.7 125 389-537 138-269 (309)
199 PF12252 SidE: Dot/Icm substra 48.0 5.7E+02 0.012 32.7 15.7 156 422-594 1039-1218(1439)
200 PF08826 DMPK_coil: DMPK coile 48.0 91 0.002 26.5 6.9 44 494-537 14-57 (61)
201 TIGR02231 conserved hypothetic 47.4 1.9E+02 0.004 32.3 11.2 36 496-531 136-171 (525)
202 PF10473 CENP-F_leu_zip: Leuci 47.0 2.8E+02 0.0061 26.9 13.2 88 493-584 26-116 (140)
203 PF10212 TTKRSYEDQ: Predicted 46.9 1.6E+02 0.0035 34.1 10.7 86 264-356 429-514 (518)
204 PF05335 DUF745: Protein of un 46.3 3.3E+02 0.0072 27.6 16.3 114 277-416 61-174 (188)
205 COG1842 PspA Phage shock prote 46.2 3.6E+02 0.0077 27.9 14.8 23 458-480 57-79 (225)
206 PF05529 Bap31: B-cell recepto 46.2 1.9E+02 0.004 28.1 9.8 85 289-373 88-191 (192)
207 PF05335 DUF745: Protein of un 45.9 3.4E+02 0.0073 27.5 18.0 61 336-408 24-89 (188)
208 PF05384 DegS: Sensor protein 45.9 3.1E+02 0.0067 27.1 14.1 129 259-402 3-149 (159)
209 PF12777 MT: Microtubule-bindi 45.2 4.1E+02 0.0089 28.4 22.6 121 496-629 219-340 (344)
210 PRK10476 multidrug resistance 45.1 3.8E+02 0.0083 28.0 15.0 15 311-325 121-135 (346)
211 PF04859 DUF641: Plant protein 44.7 41 0.0009 32.2 5.0 43 305-365 88-130 (131)
212 KOG1962 B-cell receptor-associ 44.5 1E+02 0.0022 31.9 8.0 45 342-386 164-208 (216)
213 PF14197 Cep57_CLD_2: Centroso 44.3 1.9E+02 0.0041 24.9 8.4 35 259-293 2-36 (69)
214 PRK15422 septal ring assembly 44.2 1.8E+02 0.0039 26.2 8.4 50 422-471 8-57 (79)
215 PF06120 Phage_HK97_TLTM: Tail 44.2 4.5E+02 0.0098 28.5 14.8 50 273-322 52-106 (301)
216 PF04012 PspA_IM30: PspA/IM30 44.2 3.2E+02 0.007 26.8 22.6 42 423-464 103-144 (221)
217 COG3524 KpsE Capsule polysacch 43.9 5E+02 0.011 28.9 13.5 133 448-594 181-320 (372)
218 PF10481 CENP-F_N: Cenp-F N-te 43.8 4.4E+02 0.0095 28.8 12.6 51 332-382 84-134 (307)
219 PF04111 APG6: Autophagy prote 43.5 2.5E+02 0.0055 29.9 11.0 39 495-533 54-92 (314)
220 PF08172 CASP_C: CASP C termin 43.4 1.1E+02 0.0025 31.8 8.2 39 496-534 84-122 (248)
221 COG4026 Uncharacterized protei 43.2 86 0.0019 33.2 7.3 51 270-320 157-207 (290)
222 PF15066 CAGE1: Cancer-associa 43.1 6E+02 0.013 29.6 19.2 127 361-535 366-501 (527)
223 PRK03598 putative efflux pump 43.0 4E+02 0.0087 27.6 16.3 30 450-479 111-140 (331)
224 PF15035 Rootletin: Ciliary ro 42.7 3.6E+02 0.0078 27.0 17.5 60 348-408 65-131 (182)
225 COG4913 Uncharacterized protei 42.5 7.6E+02 0.016 30.6 22.7 120 418-538 678-809 (1104)
226 TIGR02338 gimC_beta prefoldin, 42.1 2.6E+02 0.0057 25.2 10.9 48 331-378 62-109 (110)
227 PRK11578 macrolide transporter 42.0 1.1E+02 0.0024 32.2 8.1 31 445-475 157-187 (370)
228 PRK13729 conjugal transfer pil 41.9 99 0.0021 35.3 8.1 35 438-472 68-102 (475)
229 PF01920 Prefoldin_2: Prefoldi 40.9 2.3E+02 0.005 24.2 9.0 69 311-379 29-105 (106)
230 PF02185 HR1: Hr1 repeat; Int 40.3 2E+02 0.0043 23.9 7.8 60 414-476 3-63 (70)
231 COG1566 EmrA Multidrug resista 39.7 3.6E+02 0.0078 29.7 11.6 34 434-467 93-126 (352)
232 KOG0976 Rho/Rac1-interacting s 39.7 8.6E+02 0.019 30.5 39.9 71 462-533 293-372 (1265)
233 PRK10361 DNA recombination pro 38.9 6.6E+02 0.014 28.9 21.9 35 369-403 123-157 (475)
234 TIGR03794 NHPM_micro_HlyD NHPM 38.2 5.5E+02 0.012 27.8 16.6 24 447-470 228-251 (421)
235 PF09728 Taxilin: Myosin-like 37.8 5.4E+02 0.012 27.6 30.0 93 427-536 204-296 (309)
236 PRK10246 exonuclease subunit S 37.4 8.9E+02 0.019 30.0 36.9 32 546-577 445-476 (1047)
237 KOG0999 Microtubule-associated 37.3 8E+02 0.017 29.4 25.5 117 455-590 144-260 (772)
238 TIGR01069 mutS2 MutS2 family p 36.5 4.9E+02 0.011 31.3 12.9 61 344-404 530-590 (771)
239 PF11559 ADIP: Afadin- and alp 36.2 3.7E+02 0.0079 25.1 17.0 49 428-476 34-82 (151)
240 KOG4360 Uncharacterized coiled 36.1 4.9E+02 0.011 30.7 12.2 98 251-369 169-301 (596)
241 PF15254 CCDC14: Coiled-coil d 36.1 7.7E+02 0.017 30.4 14.2 109 267-382 453-561 (861)
242 COG0419 SbcC ATPase involved i 36.0 8.5E+02 0.018 29.4 43.9 22 276-297 232-253 (908)
243 PRK05689 fliJ flagellar biosyn 35.8 3.6E+02 0.0077 24.9 14.5 100 432-535 9-108 (147)
244 TIGR02449 conserved hypothetic 35.5 1.6E+02 0.0036 25.4 6.6 21 280-304 11-31 (65)
245 TIGR02449 conserved hypothetic 35.3 1.7E+02 0.0037 25.3 6.7 47 272-318 17-63 (65)
246 TIGR02971 heterocyst_DevB ABC 35.3 5.1E+02 0.011 26.6 16.7 35 446-480 97-131 (327)
247 PF03962 Mnd1: Mnd1 family; I 35.3 4.7E+02 0.01 26.1 11.3 78 513-593 70-152 (188)
248 TIGR00219 mreC rod shape-deter 35.2 54 0.0012 34.3 4.6 40 251-300 69-108 (283)
249 PF11932 DUF3450: Protein of u 34.8 5E+02 0.011 26.3 13.9 15 546-560 96-110 (251)
250 TIGR01000 bacteriocin_acc bact 34.2 6.7E+02 0.014 27.6 24.5 25 351-375 98-122 (457)
251 PF11471 Sugarporin_N: Maltopo 33.8 78 0.0017 26.6 4.4 27 451-477 30-56 (60)
252 KOG4196 bZIP transcription fac 33.3 78 0.0017 30.8 4.9 33 506-538 75-107 (135)
253 KOG0996 Structural maintenance 33.1 1.2E+03 0.026 30.2 36.8 57 422-478 416-472 (1293)
254 PF10168 Nup88: Nuclear pore c 33.1 9.3E+02 0.02 28.9 17.7 179 254-455 535-715 (717)
255 TIGR03545 conserved hypothetic 32.4 4.7E+02 0.01 30.4 11.6 66 450-516 175-244 (555)
256 PF15035 Rootletin: Ciliary ro 32.4 5.3E+02 0.011 25.8 14.2 23 433-455 17-39 (182)
257 PRK10929 putative mechanosensi 32.3 1.2E+03 0.025 29.8 41.0 74 441-516 274-358 (1109)
258 PF05911 DUF869: Plant protein 32.2 1E+03 0.022 29.1 25.4 114 359-477 591-704 (769)
259 KOG0976 Rho/Rac1-interacting s 32.1 1.1E+03 0.024 29.6 40.7 77 451-537 321-397 (1265)
260 KOG0249 LAR-interacting protei 31.8 1.1E+03 0.023 29.2 27.2 27 584-610 320-346 (916)
261 PF08826 DMPK_coil: DMPK coile 31.5 1.9E+02 0.0041 24.7 6.3 46 281-326 16-61 (61)
262 KOG0999 Microtubule-associated 30.9 1E+03 0.022 28.7 35.1 148 423-593 330-477 (772)
263 TIGR03495 phage_LysB phage lys 30.6 5.1E+02 0.011 25.2 10.1 34 342-375 60-93 (135)
264 TIGR00998 8a0101 efflux pump m 30.4 6.1E+02 0.013 26.0 15.2 6 253-258 82-87 (334)
265 PRK09343 prefoldin subunit bet 30.0 4.5E+02 0.0099 24.4 11.3 90 489-589 12-112 (121)
266 PF04871 Uso1_p115_C: Uso1 / p 29.6 3.1E+02 0.0066 26.2 8.1 66 251-316 44-110 (136)
267 KOG0288 WD40 repeat protein Ti 29.4 7.9E+02 0.017 28.3 12.3 59 265-327 9-71 (459)
268 PF15294 Leu_zip: Leucine zipp 28.7 7.8E+02 0.017 26.6 12.6 48 273-320 117-176 (278)
269 COG3096 MukB Uncharacterized p 28.5 1.3E+03 0.027 29.1 28.0 227 306-568 888-1150(1480)
270 cd00890 Prefoldin Prefoldin is 28.3 4.2E+02 0.0091 23.4 9.9 45 331-375 82-126 (129)
271 PF04394 DUF536: Protein of un 28.3 1.3E+02 0.0028 24.3 4.6 40 335-374 2-41 (45)
272 PF06705 SF-assemblin: SF-asse 27.4 6.7E+02 0.014 25.5 19.4 159 248-412 63-223 (247)
273 cd00089 HR1 Protein kinase C-r 27.4 3.7E+02 0.008 22.5 8.0 62 410-474 7-70 (72)
274 PF03962 Mnd1: Mnd1 family; I 27.3 5.1E+02 0.011 25.8 9.6 18 313-330 137-154 (188)
275 KOG0993 Rab5 GTPase effector R 27.1 1E+03 0.022 27.6 15.7 171 286-466 24-200 (542)
276 KOG4403 Cell surface glycoprot 27.0 1.1E+03 0.023 27.7 16.6 70 489-567 333-426 (575)
277 PF01920 Prefoldin_2: Prefoldi 26.6 4.1E+02 0.0088 22.7 8.5 30 445-474 4-33 (106)
278 PF10243 MIP-T3: Microtubule-b 26.5 22 0.00047 39.9 0.0 38 341-381 493-530 (539)
279 PF11471 Sugarporin_N: Maltopo 26.1 78 0.0017 26.6 3.1 29 306-334 27-55 (60)
280 TIGR02977 phageshock_pspA phag 26.0 6.8E+02 0.015 25.1 19.4 42 428-469 102-143 (219)
281 COG1566 EmrA Multidrug resista 25.8 9.3E+02 0.02 26.6 14.9 104 434-537 100-208 (352)
282 PRK00409 recombination and DNA 25.5 7.7E+02 0.017 29.7 12.1 53 350-402 541-593 (782)
283 KOG3119 Basic region leucine z 24.9 8.2E+02 0.018 25.7 12.4 39 254-293 194-232 (269)
284 PF07106 TBPIP: Tat binding pr 24.8 6.2E+02 0.013 24.2 11.6 42 512-553 116-157 (169)
285 KOG4603 TBP-1 interacting prot 24.8 5.7E+02 0.012 26.4 9.3 110 233-371 31-144 (201)
286 PRK02793 phi X174 lysis protei 24.7 2.4E+02 0.0052 24.3 5.9 51 308-362 5-55 (72)
287 KOG2264 Exostosin EXT1L [Signa 24.6 2.5E+02 0.0054 33.5 7.7 55 513-582 94-148 (907)
288 PF09766 FimP: Fms-interacting 23.7 9.6E+02 0.021 26.1 11.5 140 252-407 2-150 (355)
289 PRK05892 nucleoside diphosphat 23.6 3.2E+02 0.0069 26.6 7.2 19 540-558 53-71 (158)
290 PF07889 DUF1664: Protein of u 23.5 6.7E+02 0.014 24.1 10.9 80 304-398 43-122 (126)
291 KOG0804 Cytoplasmic Zn-finger 23.3 1.2E+03 0.027 27.1 14.6 16 150-165 133-148 (493)
292 PF07106 TBPIP: Tat binding pr 23.2 6.6E+02 0.014 24.0 9.4 27 264-290 81-107 (169)
293 PF06637 PV-1: PV-1 protein (P 23.1 1.2E+03 0.025 26.8 19.6 47 384-430 154-200 (442)
294 PF04859 DUF641: Plant protein 22.9 7E+02 0.015 24.1 9.4 77 466-550 54-131 (131)
295 PRK11578 macrolide transporter 22.7 9.2E+02 0.02 25.5 11.2 74 450-537 110-183 (370)
296 PRK00295 hypothetical protein; 22.5 2.8E+02 0.0062 23.6 5.9 51 308-362 2-52 (68)
297 PF04582 Reo_sigmaC: Reovirus 22.2 1.5E+02 0.0033 32.4 5.3 48 506-554 106-153 (326)
298 PLN02939 transferase, transfer 22.0 1.7E+03 0.036 28.2 22.7 64 342-406 127-190 (977)
299 TIGR02338 gimC_beta prefoldin, 21.9 5.9E+02 0.013 22.9 11.4 50 487-540 6-55 (110)
300 KOG1655 Protein involved in va 21.8 9.5E+02 0.021 25.3 12.6 111 445-555 25-172 (218)
301 PF12808 Mto2_bdg: Micro-tubul 21.8 2.9E+02 0.0064 23.0 5.6 44 393-436 4-47 (52)
302 PF07716 bZIP_2: Basic region 21.8 4E+02 0.0087 21.2 6.3 38 437-474 16-53 (54)
303 PRK00736 hypothetical protein; 21.6 2.7E+02 0.0058 23.7 5.6 50 308-361 2-51 (68)
304 PRK02119 hypothetical protein; 21.6 3.2E+02 0.0069 23.6 6.1 55 306-364 4-58 (73)
305 PF05812 Herpes_BLRF2: Herpesv 21.5 2.9E+02 0.0063 26.5 6.3 57 513-569 4-88 (118)
306 COG5185 HEC1 Protein involved 21.3 1.4E+03 0.03 27.0 30.6 111 268-378 256-382 (622)
307 PF14257 DUF4349: Domain of un 21.0 1.8E+02 0.0039 29.4 5.3 59 268-326 124-184 (262)
308 PF15397 DUF4618: Domain of un 20.8 1E+03 0.023 25.4 23.3 144 385-529 51-224 (258)
309 KOG0963 Transcription factor/C 20.7 1.5E+03 0.033 27.2 34.6 91 448-538 244-343 (629)
310 PF14703 DUF4463: Domain of un 20.6 2.1E+02 0.0045 23.9 4.7 61 562-630 6-67 (85)
311 CHL00118 atpG ATP synthase CF0 20.6 7.3E+02 0.016 23.5 13.1 89 494-584 56-144 (156)
312 PF10186 Atg14: UV radiation r 20.5 8.5E+02 0.019 24.2 18.4 12 367-378 37-48 (302)
313 COG3074 Uncharacterized protei 20.2 6.4E+02 0.014 22.7 8.1 51 422-472 8-58 (79)
314 PF10267 Tmemb_cc2: Predicted 20.1 1.3E+03 0.028 26.1 15.6 68 494-568 251-318 (395)
No 1
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=99.95 E-value=4.9e-26 Score=243.14 Aligned_cols=289 Identities=26% Similarity=0.328 Sum_probs=218.3
Q ss_pred hhHHHHHhcccc-----hhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhh---hhHHHHHHHHHHHHHHHHHH
Q 006784 332 SNLAEALAAKNS-----EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT---ETRMIQALREELASVERRAE 403 (631)
Q Consensus 332 sdlteAlaAKdS-----qLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~---e~qalqaLREeLa~AE~rL~ 403 (631)
+++++++.++++ ++++|+++|.++++.+..++..|++++.++.+++.++..+ +++.+.+|+++|..++.++.
T Consensus 93 ~~~~~~~~~~~~~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~ 172 (511)
T PF09787_consen 93 DDLTEASSAKSSDSLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALK 172 (511)
T ss_pred ccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455666777777 9999999999999999999999999999999999999986 68888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Q 006784 404 EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ--- 480 (631)
Q Consensus 404 ~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~l--- 480 (631)
.+.++...+.+.|+.|-.++|-........+. +.+.|....+++.++++++.+++..+.+.++||.+||+||.+|+
T Consensus 173 ~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~k 251 (511)
T PF09787_consen 173 REDGNAITAVVEFLKRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSK 251 (511)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999988888888888 78899999999999999999999999999999999999999995
Q ss_pred -------CC-Cch-HHH---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH------------------------
Q 006784 481 -------KK-SPE-EAN---QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKM------------------------ 524 (631)
Q Consensus 481 -------kk-~~E-~ag---q~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~l------------------------ 524 (631)
|+ ... +.+ ..+++..++.|-+.++.....++-.|..+..|++.+
T Consensus 252 EklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~ 331 (511)
T PF09787_consen 252 EKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEP 331 (511)
T ss_pred HHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33 222 111 112222222222222111111111111111111111
Q ss_pred ----HHHHHHHHHhhhhh--------------------------------h-hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006784 525 ----RVEMAAMKRDAEHY--------------------------------S-REEHMELEKRYRELTDLLYYKQTQLETM 567 (631)
Q Consensus 525 ----r~E~a~lkrda~~~--------------------------------s-rq~~~ELE~RlrELTdlLy~KQTqLEaL 567 (631)
++|++-+...+.|| . .....|||+||+.|||+||+|||+||.|
T Consensus 332 ~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l 411 (511)
T PF09787_consen 332 ELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESL 411 (511)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHH
Confidence 22233333333333 1 1245899999999999999999999999
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHhhhhc--cccCcccccccccccccccccchhhc
Q 006784 568 ASEKAAAEFQLEKEMNRLQEVQSEAERSRVSR--RSWSSWEEDAEMKSLEYVKIHFFIAI 625 (631)
Q Consensus 568 atEKaAlqlQLER~~~q~reaQ~e~ersr~~r--r~~~~~~~d~~~~~~e~~~~~~~~~~ 625 (631)
++||+++.|||||.+.+|+. + ...++.+. ...+.|.||++.. +.++..++.+.+
T Consensus 412 ~~ek~al~lqlErl~~~l~~-~--~~~~~~~~~~~~~~~~~~d~~~r-~~~~~~~~~~d~ 467 (511)
T PF09787_consen 412 GSEKNALRLQLERLETQLKE-E--ASNNRPSSILMKYSNSEDDAESR-VPLLMKDSPHDI 467 (511)
T ss_pred HhhhhhccccHHHHHHHHHh-h--ccCCCCchhhHhhccCCCchhhh-hhhhccCCCccc
Confidence 99999999999999999997 2 22333333 2367799999999 888777776554
No 2
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=99.86 E-value=1.3e-19 Score=191.97 Aligned_cols=261 Identities=13% Similarity=0.073 Sum_probs=195.8
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhh--h---------hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhh
Q 006784 305 LSRSYEARIKQLEQELSVYKSEVTKV--E---------SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (631)
Q Consensus 305 ~~~Sl~ar~k~lQ~ELs~ar~~v~k~--E---------sdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~ 373 (631)
-|.+...+-+..+.+++.++..+.+| | +|++++.++||||+ ++||++++++++.+.++|+.+
T Consensus 133 ~~~~~~r~~se~~~~d~~~~~~~~~~a~d~~~s~~~q~~d~~e~~~~kdSQl---kvrlqe~~~ll~~Rve~le~~---- 205 (554)
T KOG4677|consen 133 FFRGRTRPGSEQSLSDALSDTPAKSYAPDLGRSKGEQYRDYSEDWSPKDSQL---KVRLQEVRRLLKGRVESLERF---- 205 (554)
T ss_pred hhhhhcccchhhhccccccccchhhcccccccchhhhHhhHhhhcccchhhH---HHHHHHHHHHHHhhhHHHHHH----
Confidence 46778888899999999999999999 3 89999999999998 999999999999999999988
Q ss_pred hHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 006784 374 ESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQ 453 (631)
Q Consensus 374 ~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeq 453 (631)
-++++|+++|+.|+.++.+++++.-.+...+..|=..+|-++.-++.+++-|.|.|-+.+++++|+.+
T Consensus 206 ------------Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~ 273 (554)
T KOG4677|consen 206 ------------SALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKL 273 (554)
T ss_pred ------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 18999999999999999999999766666666666666666666667777799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCch-HHH-HHH------------HHHHHHHHHHHHHhhhhhHHHHHH----
Q 006784 454 KVAMLEVECATLQQELQDMEARLKRGQKKSPE-EAN-QAI------------QMQAWQDEVERARQGQRDAENKLS---- 515 (631)
Q Consensus 454 qv~~lka~~esl~QELqDyk~KA~R~lkk~~E-~ag-q~i------------e~~~~q~Eve~aR~~qreae~~ls---- 515 (631)
++...+ +.+.++||.+|+.++.+|.-++.- -+. ..+ +.++++.++-..|....+.|+...
T Consensus 274 ~~~l~~--~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s 351 (554)
T KOG4677|consen 274 LLDLFR--FLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLES 351 (554)
T ss_pred HHHHHH--HhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999988 899999999999999999743221 111 011 113344444333333332222211
Q ss_pred HHHHHHHHH--------------HHHHHHHHHhhhhh------------------------------hh---hhHHHHHH
Q 006784 516 SLEAEVQKM--------------RVEMAAMKRDAEHY------------------------------SR---EEHMELEK 548 (631)
Q Consensus 516 s~~aElq~l--------------r~E~a~lkrda~~~------------------------------sr---q~~~ELE~ 548 (631)
+++.+++.. ..+++-++...++. +| -+..+|+.
T Consensus 352 ~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~ 431 (554)
T KOG4677|consen 352 AGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWNDSVDALFT 431 (554)
T ss_pred HhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhc
Confidence 112222211 11122222222221 01 15789999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH
Q 006784 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (631)
Q Consensus 549 RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~r 586 (631)
+++.||++|++||++||.+.++++.+.|+|||+.+++-
T Consensus 432 ~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N 469 (554)
T KOG4677|consen 432 TKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVN 469 (554)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Confidence 99999999999999999999999999999999997765
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.58 E-value=0.0014 Score=81.50 Aligned_cols=338 Identities=20% Similarity=0.249 Sum_probs=207.5
Q ss_pred chhhhHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 006784 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (631)
Q Consensus 248 k~q~ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v 327 (631)
|...-|+-+...+++.+...+.+...|.+.+.-....|+.+..++..+..++.+=-..+..|.++++.|.++|..-|..+
T Consensus 1041 k~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1041 KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASR 1120 (1930)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666677778888888888889999999999999999998888877777777779999999999999999999999
Q ss_pred hhhh---hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhh---hHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 006784 328 TKVE---SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM---ESIMRNRELTETRMIQALREELASVERR 401 (631)
Q Consensus 328 ~k~E---sdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~---~RImqdh~~~e~qalqaLREeLa~AE~r 401 (631)
++.| +||. .+++.|+.+|++......+..+.-.....+. .+.|+.-+..+...+.+||-....+=..
T Consensus 1121 ~K~ek~r~dL~-------~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~e 1193 (1930)
T KOG0161|consen 1121 AKAERQRRDLS-------EELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAE 1193 (1930)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9987 5554 4567777777777443333333222223333 3344443444566677777555444333
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006784 402 A----EEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (631)
Q Consensus 402 L----~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~ 477 (631)
+ ...+..| .++.+-. ..|+....+...-+....+.-.+..+++.-++-++..+...+..+..-+.|+-.+-+
T Consensus 1194 l~~qle~l~~~k--~~lekek--~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~ 1269 (1930)
T KOG0161|consen 1194 LQEQLEQLQKDK--AKLEKEK--SDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRS 1269 (1930)
T ss_pred HHHHHHHHHHHH--HHHHHHH--HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2222222 2222222 224444555555555455555555555555555555555555555444444333333
Q ss_pred cccCCCchHHH------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Q 006784 478 RGQKKSPEEAN------------------QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE--- 536 (631)
Q Consensus 478 R~lkk~~E~ag------------------q~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~--- 536 (631)
+......+..+ -..+++.++++++.-...+..+..++..++.++..++..+..--.+..
T Consensus 1270 ~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~ 1349 (1930)
T KOG0161|consen 1270 RLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELE 1349 (1930)
T ss_pred HhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221111111 111445566666655556666666666666666666554332222222
Q ss_pred ------------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 006784 537 ------------------HYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSR 596 (631)
Q Consensus 537 ------------------~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~reaQ~e~ersr 596 (631)
..--+...+||..-|.+++.|=.-|-++|.+.+-.+.++-..-+...-+..++...++.+
T Consensus 1350 r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~ 1427 (1930)
T KOG0161|consen 1350 RKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSR 1427 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111224578888899999999999999999998888886666666666677777766554
No 4
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.57 E-value=0.0007 Score=75.49 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=46.2
Q ss_pred chhhhHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 006784 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (631)
Q Consensus 248 k~q~ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v 327 (631)
|....|-.++..|+..+..++++..+|...+.....+...|+.++..+.. ....+......|..++..++.++
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~-------~~e~l~~E~~~L~~q~~e~~~ri 222 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTE-------SSEELKEERESLKEQLAEARQRI 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445777778888888777777777777666666666666665553221 12233444445555555555555
Q ss_pred hhhhhh
Q 006784 328 TKVESN 333 (631)
Q Consensus 328 ~k~Esd 333 (631)
..+|.+
T Consensus 223 ~~LEed 228 (546)
T PF07888_consen 223 RELEED 228 (546)
T ss_pred HHHHHH
Confidence 555433
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.53 E-value=0.0045 Score=70.92 Aligned_cols=42 Identities=24% Similarity=0.186 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHH
Q 006784 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (631)
Q Consensus 546 LE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~re 587 (631)
|+..+..+...+-..+.++..+..+...+.-+|.+....+..
T Consensus 453 l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~ 494 (1164)
T TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443333
No 6
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.32 E-value=0.014 Score=72.92 Aligned_cols=324 Identities=21% Similarity=0.244 Sum_probs=195.4
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh---hhHHHHHhcccc
Q 006784 267 GQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE---SNLAEALAAKNS 343 (631)
Q Consensus 267 ~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~E---sdlteAlaAKdS 343 (631)
+......|.++=..+-+.-+.+..|+.+|..-+.+.......++-..+.+...|+.++......+ ++++...+...+
T Consensus 1194 l~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~ 1273 (1930)
T KOG0161|consen 1194 LQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQN 1273 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555666666666777777777777777776666655555555566666666666666664 557777788888
Q ss_pred hhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 006784 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT------ETRMIQALREELASVERRAEEERAAH-------- 409 (631)
Q Consensus 344 qLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~------e~qalqaLREeLa~AE~rL~~Ereah-------- 409 (631)
++..|..++.++...+.........+...++.+-+.-... -.-++.-++.++..--.++++|++..
T Consensus 1274 E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~ls 1353 (1930)
T KOG0161|consen 1274 ENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLS 1353 (1930)
T ss_pred hHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888776666555555555444442221110 13344555555666666666666663
Q ss_pred -HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----
Q 006784 410 -NATKMAAMEREVELEHR--AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQK----- 481 (631)
Q Consensus 410 -~atr~aamERE~eLE~q--~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lk----- 481 (631)
..+.+...-+.++-+.. +.+.=.+=..++..+.+.......+.+....++-.-..|+||+.|.-....+...
T Consensus 1354 k~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~l 1433 (1930)
T KOG0161|consen 1354 KANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAAL 1433 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 12222222221111111 2222223233344444445555555555555555556667788776665544311
Q ss_pred -C---CchHHHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 006784 482 -K---SPEEANQAI--QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTD 555 (631)
Q Consensus 482 -k---~~E~agq~i--e~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTd 555 (631)
+ .-+...... ....+..|++.+...-|..+..+-.+...+..+-..++.+++.-.+++ +.-.+|+.++.+++-
T Consensus 1434 e~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~-~ei~dl~~~~~e~~k 1512 (1930)
T KOG0161|consen 1434 EKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLS-QEIEDLEEQKDEGGK 1512 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 0 111111111 224466777787777777777777777777777777888888777654 345678888888888
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q 006784 556 LLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSE 591 (631)
Q Consensus 556 lLy~KQTqLEaLatEKaAlqlQLER~~~q~reaQ~e 591 (631)
.+...+.-+.+|-.||+-++-+|+-.+..++..-..
T Consensus 1513 ~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~ 1548 (1930)
T KOG0161|consen 1513 RVHELEKEKRRLEQEKEELQAALEELEAALEAEEDK 1548 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 888888999999999999999988877655544433
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.22 E-value=0.022 Score=65.00 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhHHHH
Q 006784 268 QSKEARLARVCAGLSSRLQEYKSENAQLE 296 (631)
Q Consensus 268 ~~ke~rL~rv~~qls~rLs~lr~EN~QLE 296 (631)
...-.|+..+...+..+|..|+.+..+++
T Consensus 178 ~~nL~r~~d~l~el~~ql~~L~~q~~~a~ 206 (1179)
T TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLE 206 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555443
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.06 E-value=0.059 Score=65.17 Aligned_cols=62 Identities=5% Similarity=0.102 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHh
Q 006784 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (631)
Q Consensus 313 ~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RI 376 (631)
+..+..++..++.++...+..+...-+ +..+..|...+......+......++.++.+...+
T Consensus 794 i~r~~~ei~~l~~qie~l~~~l~~~~~--~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~ 855 (1311)
T TIGR00606 794 MERFQMELKDVERKIAQQAAKLQGSDL--DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQ 855 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777766655554333 22444444444444444444444444444444443
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.05 E-value=0.041 Score=61.85 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 006784 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323 (631)
Q Consensus 270 ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~a 323 (631)
....|-+.+..|...+..++.++.+|+..|....+.|..|....+.+.......
T Consensus 151 E~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l 204 (546)
T PF07888_consen 151 EKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEEL 204 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777777788888888888888888888888888877776654433
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.02 E-value=0.055 Score=62.29 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhH
Q 006784 271 EARLARVCAGLSSRLQEYKSENA 293 (631)
Q Consensus 271 e~rL~rv~~qls~rLs~lr~EN~ 293 (631)
..+|...+..|..++..++....
T Consensus 186 l~el~~~~~~L~~q~~~l~~~~e 208 (1164)
T TIGR02169 186 IERLDLIIDEKRQQLERLRRERE 208 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555544444
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=98.02 E-value=0.052 Score=62.03 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 448 AGELEQKVAMLEVECATLQQELQDMEA 474 (631)
Q Consensus 448 a~eLeqqv~~lka~~esl~QELqDyk~ 474 (631)
+.+.+..+..++.+++.|+.++.+|+.
T Consensus 532 le~~~~~~~~l~~e~~~l~~~~~~~~~ 558 (880)
T PRK02224 532 IEEKRERAEELRERAAELEAEAEEKRE 558 (880)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444443
No 12
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.96 E-value=0.096 Score=63.05 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006784 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (631)
Q Consensus 496 ~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~ 536 (631)
++.+...++.....+...+..++.+++.++..++.+.+.+.
T Consensus 495 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~ 535 (1201)
T PF12128_consen 495 LQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLD 535 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34445555555666667777777777777777777776664
No 13
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.78 E-value=0.057 Score=54.53 Aligned_cols=200 Identities=18% Similarity=0.269 Sum_probs=91.9
Q ss_pred hHHHHhhhHHHhhhhhhhH-HH-------HHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 006784 252 QLDEAQGLLKTTISTGQSK-EA-------RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323 (631)
Q Consensus 252 ql~e~~~lL~~~~~~~~~k-e~-------rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~a 323 (631)
.|+..|..|...|.....+ -. .+...+..++..|+.+..|+++|+--+ ..++.++...
T Consensus 22 ~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~--------------~~l~~e~~~~ 87 (312)
T PF00038_consen 22 FLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEI--------------DNLKEELEDL 87 (312)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhh--------------hhHHHHHHHH
Confidence 6777777777777766544 11 233333444444444444444333222 2222222222
Q ss_pred hhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhh--------------------
Q 006784 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT-------------------- 383 (631)
Q Consensus 324 r~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~-------------------- 383 (631)
|.+.... ......-.++|..|+..++..-..-...+..+..|+.+...+.+.|..-
T Consensus 88 r~k~e~e----~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~ 163 (312)
T PF00038_consen 88 RRKYEEE----LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFR 163 (312)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-------------
T ss_pred HHHHHHH----HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccc
Confidence 2222211 2222222455555556666555555555555666666555555555441
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006784 384 ---ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEV 460 (631)
Q Consensus 384 ---e~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka 460 (631)
=+.+|.-+|.+....=..-+.+-+..|..++..+. .+......++..+...+.+-+..+..|+-++..++.
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~------~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~ 237 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELR------QQSEKSSEELESAKEELKELRRQIQSLQAELESLRA 237 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccc------ccccccccccchhHhHHHHHHhhhhHhhhhhhcccc
Confidence 03344444444433333344444444555554433 233334444444555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 006784 461 ECATLQQELQDMEAR 475 (631)
Q Consensus 461 ~~esl~QELqDyk~K 475 (631)
...+|...+.+++..
T Consensus 238 ~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 238 KNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHH
Confidence 555555555555443
No 14
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.77 E-value=0.16 Score=59.35 Aligned_cols=91 Identities=21% Similarity=0.330 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHh------hhhh
Q 006784 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI------MRNR 380 (631)
Q Consensus 307 ~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RI------mqdh 380 (631)
..+..|+.-|++.|.....+.+.| .+.+..|..+|++...++.-....++.++.++.++ |.|+
T Consensus 318 ~d~r~hi~~lkesl~~ke~~~~~L-----------qsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~ 386 (775)
T PF10174_consen 318 SDMRQHIEVLKESLRAKEQEAEML-----------QSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDM 386 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778888888887777777777 56788999999999999999999999999999997 5555
Q ss_pred hhhhhHH-------HHHHHHHHHHHHHHHHHHHHH
Q 006784 381 ELTETRM-------IQALREELASVERRAEEERAA 408 (631)
Q Consensus 381 ~~~e~qa-------lqaLREeLa~AE~rL~~Erea 408 (631)
-+.-.+= |+.|.+.|+.=+++|..+.+.
T Consensus 387 ~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~R 421 (775)
T PF10174_consen 387 LDKKERKINVLQKKIENLEEQLREKDRQLDEEKER 421 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543222 445555566555555555444
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=97.65 E-value=0.2 Score=57.38 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH
Q 006784 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (631)
Q Consensus 544 ~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~reaQ 589 (631)
.+|+.+|.++.+.+=.+-++++.....+..++-+++.....+.+..
T Consensus 512 ~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~ 557 (880)
T PRK02224 512 ERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777776555666666666666666666666555554433
No 16
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.57 E-value=0.1 Score=51.98 Aligned_cols=56 Identities=27% Similarity=0.333 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006784 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (631)
Q Consensus 422 eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~ 477 (631)
.||.++.++-..+..+.++|++-.+|..-++..+.-++..++.+...+.+++....
T Consensus 96 ~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~ 151 (237)
T PF00261_consen 96 ELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELK 151 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence 34455555555555555555555555555555555544444444444444444433
No 17
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.54 E-value=0.23 Score=55.12 Aligned_cols=186 Identities=17% Similarity=0.299 Sum_probs=93.6
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNA 411 (631)
Q Consensus 332 sdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah~a 411 (631)
......+.+++.....++..|.++...+..++..++..+. +...-..-+--+..|+.+|..+-.
T Consensus 200 ee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~-----Le~kL~~a~~~l~~Lq~El~~~~~----------- 263 (522)
T PF05701_consen 200 EERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKD-----LESKLAEASAELESLQAELEAAKE----------- 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3344445556666666666666666666555555533221 111111223445556666655443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHH--H
Q 006784 412 TKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN--Q 489 (631)
Q Consensus 412 tr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~ag--q 489 (631)
.++..+. ............|..+...+++-+.........+..+...+++|+-||...|.-..+...+...... +
T Consensus 264 ~~l~~~~---~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~ 340 (522)
T PF05701_consen 264 SKLEEEA---EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVS 340 (522)
T ss_pred HHHhhhH---HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 1111111 2222233344445556666666665555555555555555555555555544444444322111111 2
Q ss_pred HH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006784 490 AI--QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (631)
Q Consensus 490 ~i--e~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~ 536 (631)
.+ ++...+.+++.++.........+..+...++.+..|...+|..+.
T Consensus 341 ~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~ 389 (522)
T PF05701_consen 341 SLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAE 389 (522)
T ss_pred hHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 556667777666666666666666666667776666666665554
No 18
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.53 E-value=0.13 Score=51.99 Aligned_cols=98 Identities=23% Similarity=0.318 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhh
Q 006784 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (631)
Q Consensus 306 ~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~ 385 (631)
..-|...+..+...+..+-...++.+ -.+..-...+..++.++..........+..+..+..+.+..-.-+.+-++
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~----~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLE----LEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence 33455555555555444333333332 22233356677778888887777777777777776555544444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006784 386 RMIQALREELASVERRAEEERAA 408 (631)
Q Consensus 386 qalqaLREeLa~AE~rL~~Erea 408 (631)
+ |++|+++|.--..--..|-..
T Consensus 125 ~-i~~L~eEl~fl~~~heeEi~~ 146 (312)
T PF00038_consen 125 Q-IQSLKEELEFLKQNHEEEIEE 146 (312)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHhhhhhhhhh
Confidence 4 788888887665555444443
No 19
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.43 E-value=0.32 Score=54.04 Aligned_cols=353 Identities=22% Similarity=0.271 Sum_probs=153.3
Q ss_pred ccccchhhhhhhhHHHhhhhcCCCCcchhhhHHHHhhhHHHhhhhhhhHHHHHHHHHhhhh---hhhhhhhhhhHHHHHH
Q 006784 222 KDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLS---SRLQEYKSENAQLEEL 298 (631)
Q Consensus 222 k~~d~kve~~~n~k~qq~~kaD~~p~k~q~ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls---~rLs~lr~EN~QLEeL 298 (631)
|++=.++|++++.++++ .. .-..-.+.||..++.-|...-..+..++..-.+|+.-|. ..+..|+... +..
T Consensus 8 k~Avs~FG~~~~~k~~~--~~-e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kL---e~~ 81 (522)
T PF05701_consen 8 KEAVSLFGGSIDWKKHQ--SL-ERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKL---EKA 81 (522)
T ss_pred HHHHHHcCCccccccCC--ch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 44444566666555541 11 112224556666666555555555566666555555432 2233333222 222
Q ss_pred HHHHH---HHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhH
Q 006784 299 LVAER---ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (631)
Q Consensus 299 Lr~E~---~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~R 375 (631)
+.... +-+.-..-|++++++....-.... ...+|++.+.+|..+-..|.+....|..++.+...
T Consensus 82 ~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~-------------~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~ 148 (522)
T PF05701_consen 82 QAEEKQAEEDSELAKFRAKELEQGIAEEASVA-------------WKAELESAREQYASAVAELDSVKQELEKLRQELAS 148 (522)
T ss_pred HHHHHHHHHhhHHhHHHHHHHhhhhcccchHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 113333345555555443311111 23334444444444444444444444444444333
Q ss_pred hh-------hhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 376 IM-------RNRELT------ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIAD 442 (631)
Q Consensus 376 Im-------qdh~~~------e~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~ 442 (631)
.+ ..-.+. ....+.-|..+|...-..|.--+.+|..+.-..+.=....+.....--..|..++..+.
T Consensus 149 ~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~ 228 (522)
T PF05701_consen 149 ALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELE 228 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 222221 24445555555544443333322222222111111000111112222233333443333
Q ss_pred HHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccc--CCCchHHH-----HHHHHHHHHHHHHHHHhhhhhHH
Q 006784 443 ERT---AKAGELEQKVAMLEVECATLQQELQDMEA-RLKRGQ--KKSPEEAN-----QAIQMQAWQDEVERARQGQRDAE 511 (631)
Q Consensus 443 E~k---~Ka~eLeqqv~~lka~~esl~QELqDyk~-KA~R~l--kk~~E~ag-----q~ie~~~~q~Eve~aR~~qreae 511 (631)
.=+ ..+.+|+.++......+..|+.||..|.. +..... +....... ...++......+..+......+.
T Consensus 229 ~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~ 308 (522)
T PF05701_consen 229 ELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLR 308 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 44577778888888899999999998887 222110 11111111 11133333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----------hHHHH------HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006784 512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSRE----------EHMEL------EKRYRELTDLLYYKQTQLETMASEKAAAE 575 (631)
Q Consensus 512 ~~lss~~aElq~lr~E~a~lkrda~~~srq----------~~~EL------E~RlrELTdlLy~KQTqLEaLatEKaAlq 575 (631)
..+.+++.++...+.++..+++....++.. ...+| +.+.++..+.|+ ..|..|++|...+.
T Consensus 309 ~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~---~~Lqql~~Eae~Ak 385 (522)
T PF05701_consen 309 ASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELP---KALQQLSSEAEEAK 385 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHH---HHHHHHHHHHHHHH
Confidence 455555555555555555555554433221 11222 223333333332 44666666666665
Q ss_pred HHhHHHHHHHHHHHHHHHHhh
Q 006784 576 FQLEKEMNRLQEVQSEAERSR 596 (631)
Q Consensus 576 lQLER~~~q~reaQ~e~ersr 596 (631)
.-.+..-.-+..++.+++..+
T Consensus 386 ~ea~~~~~E~~~~k~E~e~~k 406 (522)
T PF05701_consen 386 KEAEEAKEEVEKAKEEAEQTK 406 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555665555444
No 20
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.37 E-value=0.44 Score=54.50 Aligned_cols=201 Identities=20% Similarity=0.233 Sum_probs=92.2
Q ss_pred HHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH---HHHHH------hHHHHHHHHHHHHHHhhh
Q 006784 253 LDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV---AEREL------SRSYEARIKQLEQELSVY 323 (631)
Q Consensus 253 l~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr---~E~~~------~~Sl~ar~k~lQ~ELs~a 323 (631)
.+..-.-|+.+....+.|...+..-|..|+.+....-.....||.=|. +.... .+.....-..||.++...
T Consensus 13 rd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L 92 (617)
T PF15070_consen 13 RDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHL 92 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHH
Confidence 344445567777777777777777777777777666666665554443 11111 111112223445555444
Q ss_pred hhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 006784 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (631)
Q Consensus 324 r~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~ 403 (631)
+.+++.|+.. +.+..........+....+..|.+++....++-. ...-...++.+|+..-..+-|++.
T Consensus 93 ~kElE~L~~q-----------lqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e-~~~D~~kLLe~lqsdk~t~SRAls 160 (617)
T PF15070_consen 93 RKELESLEEQ-----------LQAQVENNEQLSRLNQEQEERLAELEEELERLQE-QQEDRQKLLEQLQSDKATASRALS 160 (617)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcccchHHHHHHH
Confidence 4444444322 2222222222233333344444444444433222 112245566666666666666554
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006784 404 EERAAH---NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (631)
Q Consensus 404 ~Ereah---~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QEL 469 (631)
.=++=+ ....-.||. |--.-.+.+.+|-.-+....+=..|+.+++.++..++-.++.-.+|+
T Consensus 161 QN~eLK~QL~Elq~~Fv~----ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~ 225 (617)
T PF15070_consen 161 QNRELKEQLAELQDAFVK----LTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEA 225 (617)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333221 222223333 44444444444444444444444444444444444444444433333
No 21
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.35 E-value=0.5 Score=54.70 Aligned_cols=73 Identities=19% Similarity=0.310 Sum_probs=55.2
Q ss_pred hhHHHHhhhHHHhhhhhhhHHHHHHHH-------HhhhhhhhhhhhhhhHHHHHHHH-------HHHHHhHHHHHHHHHH
Q 006784 251 DQLDEAQGLLKTTISTGQSKEARLARV-------CAGLSSRLQEYKSENAQLEELLV-------AERELSRSYEARIKQL 316 (631)
Q Consensus 251 ~ql~e~~~lL~~~~~~~~~ke~rL~rv-------~~qls~rLs~lr~EN~QLEeLLr-------~E~~~~~Sl~ar~k~l 316 (631)
.-||-.-..||+++....+-|.+|--- .-.++..|+++|.+|+||+-=|. .+.+.+.+|+.|+++.
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468878888999999987777776554 34667789999999998887554 6777799999997776
Q ss_pred HHHHhhh
Q 006784 317 EQELSVY 323 (631)
Q Consensus 317 Q~ELs~a 323 (631)
+.-...+
T Consensus 501 ~~~R~~l 507 (697)
T PF09726_consen 501 RRQRASL 507 (697)
T ss_pred HHHHHHH
Confidence 6544433
No 22
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.33 E-value=0.58 Score=54.91 Aligned_cols=230 Identities=20% Similarity=0.312 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhh---hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhh
Q 006784 306 SRSYEARIKQLEQELSVYKSEVTKVE---SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (631)
Q Consensus 306 ~~Sl~ar~k~lQ~ELs~ar~~v~k~E---sdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~ 382 (631)
.++|+--+..++.|+...++++...+ +.+-..|-+..+....+|.++|.+...|.-...-|.++|..+.-+...+.+
T Consensus 240 i~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d 319 (775)
T PF10174_consen 240 IASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSD 319 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 45555566778999999988887773 445578999999999999999999999999999999999999998888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 006784 383 TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHR---AAEASMALARIQRIADERTAKAGELEQKVAMLE 459 (631)
Q Consensus 383 ~e~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q---~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lk 459 (631)
. -+=|+.|++.|+..+.....=+.--.+.|..--+.+..++.. +..+..-+++.+=.+.+-+-.++-.+.+|..+.
T Consensus 320 ~-r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 320 M-RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 666888999888877665443333333333333322223322 333333333333334444444444444444444
Q ss_pred HHHHHHHHH-------HHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHH
Q 006784 460 VECATLQQE-------LQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQG--------QRDAENKLSSLEAEVQKM 524 (631)
Q Consensus 460 a~~esl~QE-------LqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~--------qreae~~lss~~aElq~l 524 (631)
..++.|.-- |...+.+... +.....+=+....+..+..+.++.+.. -.+....+..++.+++.+
T Consensus 399 ~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~l 477 (775)
T PF10174_consen 399 KKIENLEEQLREKDRQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKEL 477 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 3334444443 322222223333443333333322222 122334455567777777
Q ss_pred HHHHHHHHHhhhh
Q 006784 525 RVEMAAMKRDAEH 537 (631)
Q Consensus 525 r~E~a~lkrda~~ 537 (631)
+.++..|..+++.
T Consensus 478 k~~~~~LQ~eLsE 490 (775)
T PF10174_consen 478 KAKLESLQKELSE 490 (775)
T ss_pred HHHHHHHhhhhHH
Confidence 7766666666543
No 23
>PRK09039 hypothetical protein; Validated
Probab=97.29 E-value=0.021 Score=60.19 Aligned_cols=61 Identities=26% Similarity=0.364 Sum_probs=53.3
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 006784 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESN 333 (631)
Q Consensus 273 rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~Esd 333 (631)
=|...+.++...|..|..+..+|=++|.-+......+..++.+++..|+.++.+.++.+..
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~ 103 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888999999999999999999999999999999999999999999887777766553
No 24
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.29 E-value=1 Score=56.93 Aligned_cols=255 Identities=19% Similarity=0.253 Sum_probs=171.9
Q ss_pred hhHHHHHhcccchhHHHHHH----HHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhh------hHHHHHHHHHHHHHHHH
Q 006784 332 SNLAEALAAKNSEIETLVSS----IDALKKQAALSEGNLASLQMNMESIMRNRELTE------TRMIQALREELASVERR 401 (631)
Q Consensus 332 sdlteAlaAKdSqLavLkvr----Ldeadq~l~~~~~~LeelQ~e~~RImqdh~~~e------~qalqaLREeLa~AE~r 401 (631)
..|..-|..++-.|.++... +......|.-....+.++|+.+..+.+..+.-+ ..-|-.|++-...-+..
T Consensus 195 ~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~k 274 (1822)
T KOG4674|consen 195 KWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEK 274 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 66778889999999999999 899999999999999999999999988777742 44555667666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Q 006784 402 AEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ- 480 (631)
Q Consensus 402 L~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~l- 480 (631)
+..|-..|...=--.+.-.-+|+++.++...++..+++.+++..-++.+...+++.++..+..+..++ +.+.+|-.
T Consensus 275 f~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~---~k~~~~le~ 351 (1822)
T KOG4674|consen 275 FEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKL---EKKVSRLEG 351 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 77777766333333344445799999999999999999999999999999999999887666555443 33333321
Q ss_pred --------------CCCch--HH----H-----HHHHH----HHHHHHHHHHHhhhhhHHHHHHHHHHHHH---------
Q 006784 481 --------------KKSPE--EA----N-----QAIQM----QAWQDEVERARQGQRDAENKLSSLEAEVQ--------- 522 (631)
Q Consensus 481 --------------kk~~E--~a----g-----q~ie~----~~~q~Eve~aR~~qreae~~lss~~aElq--------- 522 (631)
.++-+ ++ + +.+.+ ..++.+++.--.+...+...+++.-.++.
T Consensus 352 ~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~q 431 (1822)
T KOG4674|consen 352 ELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQ 431 (1822)
T ss_pred HHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 11111 10 0 11111 34566666555555555555555333332
Q ss_pred -----HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 006784 523 -----KMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 590 (631)
Q Consensus 523 -----~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~reaQ~ 590 (631)
.|-.++++|-+.+++ +.+.-..+|+.|..|.-.|-...+++-.|-..--.+.-|.==.+..+.+.+.
T Consensus 432 r~~~e~~~~~~~~l~~el~~-~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~ 503 (1822)
T KOG4674|consen 432 RSELERMQETKAELSEELDF-SNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRK 503 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222223333333322 4456688899999988888888888887777766666665555555566553
No 25
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.29 E-value=0.75 Score=55.41 Aligned_cols=34 Identities=32% Similarity=0.335 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHH
Q 006784 542 EHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (631)
Q Consensus 542 ~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~ 582 (631)
...++++||..|. ++++.+...+..+.-.++..-
T Consensus 971 e~e~~~~r~~~l~-------~~~~dl~~a~~~l~~~i~~~d 1004 (1163)
T COG1196 971 EYEEVEERYEELK-------SQREDLEEAKEKLLEVIEELD 1004 (1163)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555553 456666666666655554433
No 26
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.18 E-value=1.2 Score=55.62 Aligned_cols=54 Identities=17% Similarity=0.079 Sum_probs=39.6
Q ss_pred HHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh
Q 006784 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV 330 (631)
Q Consensus 277 v~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~ 330 (631)
...+.+.++...+......+.-|..-.+.+..+..+++.|+.++..++.-....
T Consensus 287 EAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 287 EALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336777777777777777777777666778888889999999888886554443
No 27
>PRK11637 AmiB activator; Provisional
Probab=97.04 E-value=0.51 Score=50.62 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=17.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006784 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (631)
Q Consensus 281 ls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~EL 320 (631)
+..+|.+++.+..+++.-+..-......+...++.++.+|
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi 84 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAI 84 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554444444433333333444444444444
No 28
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.03 E-value=1.3 Score=53.36 Aligned_cols=45 Identities=22% Similarity=0.373 Sum_probs=25.7
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHh
Q 006784 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (631)
Q Consensus 332 sdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RI 376 (631)
..+.+++.....++..+...+++....+...+..+.++......+
T Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 242 EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666666666666666666665544444
No 29
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.89 E-value=0.76 Score=50.71 Aligned_cols=183 Identities=20% Similarity=0.244 Sum_probs=115.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHH---
Q 006784 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA--- 359 (631)
Q Consensus 283 ~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l--- 359 (631)
.+|++++.+.++++..++.-.+..+.|+..+|++..+++...+.+...++++... +..|+.+..+|.....+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~----~~~I~~~~~~l~~l~~q~r~q 113 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKL----RKQIADLNARLNALEVQEREQ 113 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhhHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888887777788888888888888877777666665444332 333444444443333322
Q ss_pred -HhhHhHHHHHHhh------hhHhhhhhhhh-----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 360 -ALSEGNLASLQMN------MESIMRNRELT-----------------ETRMIQALREELASVERRAEEERAAHNATKMA 415 (631)
Q Consensus 360 -~~~~~~LeelQ~e------~~RImqdh~~~-----------------e~qalqaLREeLa~AE~rL~~Ereah~atr~a 415 (631)
......|.+++.. .-.+..++... +...+-.-+..|..-....+.||..++.+..+
T Consensus 114 r~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~e 193 (420)
T COG4942 114 RRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSE 193 (420)
T ss_pred HHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555442 11122222121 13333344456667777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006784 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (631)
Q Consensus 416 amERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QEL 469 (631)
-.+++.+|..-+.|=-..++..+..+..+..|..+|..+-..++..++++.-+.
T Consensus 194 q~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~a 247 (420)
T COG4942 194 QRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAA 247 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 888888887777777777777777777777777777666666666666655333
No 30
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=1.3 Score=53.94 Aligned_cols=189 Identities=21% Similarity=0.269 Sum_probs=103.4
Q ss_pred hHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHHhhhhhhh
Q 006784 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRS----YEARIKQLEQELSVYKSEV 327 (631)
Q Consensus 252 ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~S----l~ar~k~lQ~ELs~ar~~v 327 (631)
-++.+.+.+....--.+.+.-.+...+..++.+...++...+ .|..+++.+.+ ++.+++++.-...+
T Consensus 782 ~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~----~~~~~~k~~~~~~~~l~~~i~~~E~~~~k----- 852 (1293)
T KOG0996|consen 782 KLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLE----KLTASVKRLAELIEYLESQIAELEAAVLK----- 852 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence 344444444444444444444455555556666666555554 34444444433 33334444333222
Q ss_pred hhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006784 328 TKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERA 407 (631)
Q Consensus 328 ~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ere 407 (631)
.. +-.+.|--+..+|+.|+..++++...... +...+.||..+++|--..-..+..=|.-+.++|..
T Consensus 853 --~~-~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~---------- 918 (1293)
T KOG0996|consen 853 --KV-VDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDK---------- 918 (1293)
T ss_pred --cc-CcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHH----------
Confidence 21 11334445577889999999998755544 78888998888887544333333333333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006784 408 AHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (631)
Q Consensus 408 ah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R 478 (631)
++..++-...++....|.+.--+.+..+++..+..++-+|+.|.+++.+.+.++.-
T Consensus 919 ---------------l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E 974 (1293)
T KOG0996|consen 919 ---------------LEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAE 974 (1293)
T ss_pred ---------------HHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444444455555556666666666666666666666666666666666665553
No 31
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.81 E-value=0.56 Score=46.52 Aligned_cols=177 Identities=24% Similarity=0.306 Sum_probs=116.2
Q ss_pred hhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH-HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhccc
Q 006784 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV-AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKN 342 (631)
Q Consensus 264 ~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr-~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKd 342 (631)
.|...-|+.+|.-.+..+...|++++.||.=|-.+-. ++..+ ...+.-+.+|...|+.-+
T Consensus 7 lSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL-------------------~k~e~~e~~Lpqll~~h~ 67 (194)
T PF15619_consen 7 LSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKAL-------------------QKYEDTEAELPQLLQRHN 67 (194)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhhhhHHHHHHHHH
Confidence 4555667778888888999999999999993332221 22221 122333567777788888
Q ss_pred chhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhH-------hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMES-------IMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA 415 (631)
Q Consensus 343 SqLavLkvrLdeadq~l~~~~~~LeelQ~e~~R-------Imqdh~~~e~qalqaLREeLa~AE~rL~~Ereah~atr~a 415 (631)
.++-+|+.+|-.+.......+..|-....++-+ |-+-..+..-.--+.|..+|+.++..+... + -++.
T Consensus 68 eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~-~----~ki~ 142 (194)
T PF15619_consen 68 EEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEK-E----KKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHH-H----HHHH
Confidence 888888888877776666665555544444333 222212111111356677777777666321 1 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (631)
Q Consensus 416 amERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk 473 (631)
.|++++.=+..+ ..|.+.-++.|..+++..+..+.-++..|++-|.+.+
T Consensus 143 ------~Lek~leL~~k~---~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 143 ------ELEKQLELENKS---FRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred ------HHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366666656666 8899999999999999999999999999999998764
No 32
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.80 E-value=1.6 Score=50.94 Aligned_cols=330 Identities=19% Similarity=0.248 Sum_probs=206.4
Q ss_pred HHHHhhhHHHhhh---hhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 006784 253 LDEAQGLLKTTIS---TGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTK 329 (631)
Q Consensus 253 l~e~~~lL~~~~~---~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k 329 (631)
...+.-||+...+ ++..++..|.--+-++++.|++.+.||..|-.+...-...+..++...+.|..|+..++.|=.+
T Consensus 15 ~~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~r 94 (717)
T PF09730_consen 15 EEREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREAR 94 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567776664 4588889999999999999999999999888888877788999999999999999999988888
Q ss_pred h--h-hhHHHHHhcccchhHHHH---HHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhh---hHHHHHHHHHHHHHHH
Q 006784 330 V--E-SNLAEALAAKNSEIETLV---SSIDALKKQAALSEGNLASLQMNMESIMRNRELTE---TRMIQALREELASVER 400 (631)
Q Consensus 330 ~--E-sdlteAlaAKdSqLavLk---vrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e---~qalqaLREeLa~AE~ 400 (631)
. | ++|-+=.-.-.-|+.+|| |.++.++-.+.-+++-.+-|....+-+++=...++ .-|+++|+.+ ++.-.
T Consensus 95 ll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~E-Reqk~ 173 (717)
T PF09730_consen 95 LLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSE-REQKN 173 (717)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 7 2 444444444455555554 34555555555555555555544444443333333 3445555444 33444
Q ss_pred HHHHHHHHH-----------HHHH--------------------------------------------------------
Q 006784 401 RAEEERAAH-----------NATK-------------------------------------------------------- 413 (631)
Q Consensus 401 rL~~Ereah-----------~atr-------------------------------------------------------- 413 (631)
.|++|-..| .+.-
T Consensus 174 ~LrkEL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 253 (717)
T PF09730_consen 174 ALRKELDQHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPS 253 (717)
T ss_pred HHHHHHHHhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCc
Confidence 455554443 0000
Q ss_pred -------------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Q 006784 414 -------------MAAMERE-VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ-----ELQDMEA 474 (631)
Q Consensus 414 -------------~aamERE-~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~Q-----ELqDyk~ 474 (631)
+.+++.+ ..+|++-+.....|--.|+.++-.+--..+.+.++..+...+.+++. +.+++..
T Consensus 254 lv~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d 333 (717)
T PF09730_consen 254 LVSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAED 333 (717)
T ss_pred ccchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 0011100 11344456677788888888888888888888888888888888776 2222211
Q ss_pred HHhcccCCC------------ch-----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006784 475 RLKRGQKKS------------PE-----EANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEH 537 (631)
Q Consensus 475 KA~R~lkk~------------~E-----~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~ 537 (631)
.-. ...+. ++ -...+.++..|+.++...+......+. .+..+...++.++..|+..+..
T Consensus 334 ~~~-~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl~~ 409 (717)
T PF09730_consen 334 SEK-ERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKLMS 409 (717)
T ss_pred ccc-ccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 100 00000 11 000233567788888877776666554 3444445555555555555554
Q ss_pred hhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHH
Q 006784 538 YSR------EEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (631)
Q Consensus 538 ~sr------q~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~re 587 (631)
+.. .--.+||+.|+.++.+--..|+.|-..-.|-.+.--.|-.+-..+=.
T Consensus 410 lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~ 465 (717)
T PF09730_consen 410 LEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCM 465 (717)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 24489999999999999999999988888877777666655444333
No 33
>PRK11637 AmiB activator; Provisional
Probab=96.80 E-value=1 Score=48.43 Aligned_cols=8 Identities=13% Similarity=0.289 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 006784 395 LASVERRA 402 (631)
Q Consensus 395 La~AE~rL 402 (631)
+..+...+
T Consensus 164 i~~~d~~~ 171 (428)
T PRK11637 164 LNQARQET 171 (428)
T ss_pred HHHHHHHH
Confidence 44443333
No 34
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.75 E-value=2.2 Score=51.79 Aligned_cols=66 Identities=23% Similarity=0.277 Sum_probs=45.1
Q ss_pred hHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 006784 259 LLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (631)
Q Consensus 259 lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar 324 (631)
.+...+...+............+...+..++.+..+.+.-|+.....+..+.+++.+|+.-|.-..
T Consensus 473 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~ 538 (1201)
T PF12128_consen 473 QADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQK 538 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 334444444444445555566667777777777777777787777778888888888888886543
No 35
>PRK09039 hypothetical protein; Validated
Probab=96.64 E-value=0.49 Score=50.16 Aligned_cols=55 Identities=27% Similarity=0.303 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (631)
Q Consensus 422 eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA 476 (631)
.++.+++.....|+...-.+.+....+.-|.+++..++.+++++.-+|.+.+.+-
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666777777777777777777777777777777777777777766654
No 36
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.58 E-value=2 Score=48.96 Aligned_cols=94 Identities=23% Similarity=0.290 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhh----------hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhH
Q 006784 306 SRSYEARIKQLEQELSVYKSEVTKVE----------SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (631)
Q Consensus 306 ~~Sl~ar~k~lQ~ELs~ar~~v~k~E----------sdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~R 375 (631)
.+.++..++.|+.|+..+|..+++.+ ++.-.+|+..++++.-++.++..+.-.+.-......-|..+..+
T Consensus 108 ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~ 187 (546)
T KOG0977|consen 108 RAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELAR 187 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44444555555555555555544442 33344555556666666655554444433333333333333333
Q ss_pred hhhhhhh---h---hhHHHHHHHHHHHHHH
Q 006784 376 IMRNREL---T---ETRMIQALREELASVE 399 (631)
Q Consensus 376 Imqdh~~---~---e~qalqaLREeLa~AE 399 (631)
+-.+..+ . -.--+|+|.++|+-..
T Consensus 188 ~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 188 ARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3222111 0 1223566666666555
No 37
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.57 E-value=3.1 Score=51.13 Aligned_cols=199 Identities=21% Similarity=0.255 Sum_probs=112.9
Q ss_pred CcchhhhHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 006784 246 PTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (631)
Q Consensus 246 p~k~q~ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~ 325 (631)
..++..+|++++-.++.++. +..+|...-..++++++....+|.-+++.|..=-..+..+....+.++.++-..+.
T Consensus 541 v~~~rk~le~~~~d~~~e~~----~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~ 616 (1317)
T KOG0612|consen 541 VNSLRKQLEEAELDMRAESE----DAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERR 616 (1317)
T ss_pred HHHHHHHHHHhhhhhhhhHH----HHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777666666654 35567777777777888777788777777764444455555555666665533221
Q ss_pred hhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006784 326 EVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE 405 (631)
Q Consensus 326 ~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~E 405 (631)
. .....+.+++-++.|..|...+.+-...+...++ |... ..-+..|.+.. .+=.-+.-+|...+-.++++
T Consensus 617 ~----~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~---~~e~~~~~ek~--~~e~~~e~~lk~~q~~~eq~ 686 (1317)
T KOG0612|consen 617 Q----RTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRE---NQERISDSEKE--ALEIKLERKLKMLQNELEQE 686 (1317)
T ss_pred H----HHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 1 4566677777777777777766665555544444 3222 22222222221 11112333444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 406 RAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471 (631)
Q Consensus 406 reah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqD 471 (631)
...|+.+|+..- ...+..++..+.+++.=.-.++.-+.-...+|+.|+-.+.-
T Consensus 687 ~~E~~~~~L~~~-------------e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~ 739 (1317)
T KOG0612|consen 687 NAEHHRLRLQDK-------------EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQ 739 (1317)
T ss_pred HHHHHHHHHhhH-------------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 555555533332 33444566667777666666666666677777777654433
No 38
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.23 E-value=4.8 Score=49.60 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006784 385 TRMIQALREELASVERRAE--EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVEC 462 (631)
Q Consensus 385 ~qalqaLREeLa~AE~rL~--~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~ 462 (631)
.+.|..++++.+.||..+- -+|.....++|+.+ .+++..-..-+...+.-|-+++.++
T Consensus 1597 ~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l--------------------k~~~~qns~~A~~a~~~a~sa~~~A 1656 (1758)
T KOG0994|consen 1597 QQLLAKVQEETAAAEKLATSATQQLGELETRMEEL--------------------KHKAAQNSAEAKQAEKTAGSAKEQA 1656 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3556777777777776652 22222333333333 3333333344444455555555555
Q ss_pred HHHHHH---HHHHHHHHhccc
Q 006784 463 ATLQQE---LQDMEARLKRGQ 480 (631)
Q Consensus 463 esl~QE---LqDyk~KA~R~l 480 (631)
.+++|. |++|-.++.+-+
T Consensus 1657 ~~a~q~~~~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1657 LSAEQGLEILQKYYELVDRLL 1677 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555544 444444444444
No 39
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.19 E-value=5 Score=49.44 Aligned_cols=27 Identities=41% Similarity=0.441 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 006784 297 ELLVAERELSRSYEARIKQLEQELSVY 323 (631)
Q Consensus 297 eLLr~E~~~~~Sl~ar~k~lQ~ELs~a 323 (631)
+.+..+......|+..+.+++++|..+
T Consensus 501 ek~~~~~~~~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 501 EKLSEEEAKKRKLEALVRQLEEELEDA 527 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666666555
No 40
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.18 E-value=6.2 Score=50.40 Aligned_cols=71 Identities=25% Similarity=0.317 Sum_probs=46.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHh
Q 006784 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371 (631)
Q Consensus 301 ~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~ 371 (631)
.+-....+++++|+.|..+|..++.....-.+++-+--.-.+.+|.-....++++...+...-..|..++.
T Consensus 795 s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~ 865 (1822)
T KOG4674|consen 795 SEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVST 865 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444667779999999999999988777666666666666666666666666555554444444443333
No 41
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=3.5 Score=47.24 Aligned_cols=287 Identities=19% Similarity=0.255 Sum_probs=152.9
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH----hHHHHHHHHHHHHHHhhhhhhhhhhh----------hh
Q 006784 268 QSKEARLARVCAGLSSRLQEYKSENAQLEELLVAEREL----SRSYEARIKQLEQELSVYKSEVTKVE----------SN 333 (631)
Q Consensus 268 ~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~----~~Sl~ar~k~lQ~ELs~ar~~v~k~E----------sd 333 (631)
..=..+|..........++.++..|.-|++++. |+.. ..||+.+.+.||.++++.++-+.-.+ .-
T Consensus 220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~ 298 (581)
T KOG0995|consen 220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMIN-EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEM 298 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344456677777788899999999999999998 5554 88999999999999999977766543 44
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHhhH---hHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 334 LAEALAAKNSEIETLVSSIDALKKQAALSE---GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHN 410 (631)
Q Consensus 334 lteAlaAKdSqLavLkvrLdeadq~l~~~~---~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah~ 410 (631)
|.+=+..|.++++.|+...++.+.++.... +..+. .++=-..|...|......+.+.+..-.
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~---------------mn~Er~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVER---------------MNLERNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666555554432110 00000 122223333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------HHHHHHHHHhhHHH
Q 006784 411 ATKMAAMEREVELEHRAAEASMALAR----------------------------------------IQRIADERTAKAGE 450 (631)
Q Consensus 411 atr~aamERE~eLE~q~aEastALa~----------------------------------------aqR~~~E~k~Ka~e 450 (631)
-.++.+-.+=.++|..+..--.++.+ +++.+-+...+-.-
T Consensus 364 ~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~t 443 (581)
T KOG0995|consen 364 ELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELET 443 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332222222333332222222222 33333333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------CC-CchHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 006784 451 LEQKVAMLEVECATLQQELQDMEARLKRGQ------KK-SPEEA-NQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQ 522 (631)
Q Consensus 451 Leqqv~~lka~~esl~QELqDyk~KA~R~l------kk-~~E~a-gq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq 522 (631)
||..+.-.++-.+.++|.|-.|+-++.-.. +. ..++- -.-+++..+..++-. -.......|......++
T Consensus 444 Lq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~---l~l~~~~~m~~a~~~v~ 520 (581)
T KOG0995|consen 444 LQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLN---LKLVLNTSMKEAEELVK 520 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443211 00 00000 012233333333311 12233344455566666
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006784 523 KMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA 573 (631)
Q Consensus 523 ~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaA 573 (631)
+.+.|...|..+...+-..-+.+|..=|+...+.-..=|..||-+-++.+.
T Consensus 521 s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~~~~~ 571 (581)
T KOG0995|consen 521 SIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKADLHK 571 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777766555566888888888888888888888887665443
No 42
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=4.5 Score=48.13 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=30.6
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 006784 562 TQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRV 597 (631)
Q Consensus 562 TqLEaLatEKaAlqlQLER~~~q~reaQ~e~ersr~ 597 (631)
+||+.|-++.+++++++|.+.+.-++.+.++++++.
T Consensus 570 ~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~l 605 (1118)
T KOG1029|consen 570 NQLKELKEDVNSQQLAKEELYKNERDKLKEAETKAL 605 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999998888888887777654
No 43
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.10 E-value=3.6 Score=49.98 Aligned_cols=92 Identities=21% Similarity=0.382 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006784 386 RMIQALREELASVERRAEEERAA--HNATKMAAMEREVELEHR-AAEASMALARIQRIADERTAKAGELEQKVAMLEVEC 462 (631)
Q Consensus 386 qalqaLREeLa~AE~rL~~Erea--h~atr~aamERE~eLE~q-~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~ 462 (631)
..+.+|++++.......+..+.. ...++....-.|+..-.. +.++-..|-..-|.+-+-+..+.+.++.+..++...
T Consensus 295 ek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~ 374 (1074)
T KOG0250|consen 295 EKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEV 374 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655555533 244555555556555544 888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 006784 463 ATLQQELQDMEARLK 477 (631)
Q Consensus 463 esl~QELqDyk~KA~ 477 (631)
+.+...+.+|+..-.
T Consensus 375 d~l~k~I~~~~~~~~ 389 (1074)
T KOG0250|consen 375 DRLEKQIADLEKQTN 389 (1074)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998773
No 44
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.09 E-value=4.1 Score=47.52 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 446 AKAGELEQKVAMLEVECATLQQELQDMEARL 476 (631)
Q Consensus 446 ~Ka~eLeqqv~~lka~~esl~QELqDyk~KA 476 (631)
.|..+||.+++.++.++-...-.+..|+..+
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444444444443
No 45
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.02 E-value=5.8 Score=48.69 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=26.8
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH
Q 006784 258 GLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV 300 (631)
Q Consensus 258 ~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr 300 (631)
.-++..+..++.+...+...|..+...+..+..+..+++....
T Consensus 220 ~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~ 262 (1311)
T TIGR00606 220 CEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLS 262 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666677666666666666665555544
No 46
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.97 E-value=1.6 Score=49.75 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 426 RAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471 (631)
Q Consensus 426 q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqD 471 (631)
.+++.-.-|..+++.+.+-..++.+-+-+|..++.+++.+++.+..
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~ 334 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRS 334 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3555555556666666666666777777777777777777766644
No 47
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.94 E-value=5.9 Score=48.14 Aligned_cols=306 Identities=18% Similarity=0.194 Sum_probs=156.8
Q ss_pred HhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHH---HHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 006784 256 AQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEEL---LVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (631)
Q Consensus 256 ~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeL---Lr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~Es 332 (631)
.+.-|..+++++..|+..|.-...-...-|..+|.|..+||-- ||+|..-.-+..-|++.-.+||...|.+.++|+.
T Consensus 171 ~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~ 250 (1195)
T KOG4643|consen 171 KNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDT 250 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCC
Confidence 3445677777777777777777666666666666666666533 3455555555555666666667666777666641
Q ss_pred hHHHHH----------------------------------------hcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhh
Q 006784 333 NLAEAL----------------------------------------AAKNSEIETLVSSIDALKKQAALSEGNLASLQMN 372 (631)
Q Consensus 333 dlteAl----------------------------------------aAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e 372 (631)
...+++ +.-.++|=.|+..++-+.-...+-..++|+|+.+
T Consensus 251 ~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eE 330 (1195)
T KOG4643|consen 251 TYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEE 330 (1195)
T ss_pred ccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 111111 1223455555555555555556666777777777
Q ss_pred hhHhhh-------------hhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHH
Q 006784 373 MESIMR-------------NRE---LTETRMIQALREELASVERRAEEERAAHN----------------ATKMAAMERE 420 (631)
Q Consensus 373 ~~RImq-------------dh~---~~e~qalqaLREeLa~AE~rL~~Ereah~----------------atr~aamERE 420 (631)
++-++- +|+ +.++--++..++.|-. .++++-+-++|. ++|+-.|+-|
T Consensus 331 nstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke 409 (1195)
T KOG4643|consen 331 NSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS-DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKE 409 (1195)
T ss_pred HHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 766542 222 2256677888888876 667777777752 2333333332
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHH-HHHHH
Q 006784 421 VE-LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQM-QAWQD 498 (631)
Q Consensus 421 ~e-LE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~-~~~q~ 498 (631)
++ |+.... -++-.+.+......+|+.--+.+..+.+.|.++..--.--..|. ..--+.-.+.+.. ..+-+
T Consensus 410 ~KnLs~k~e-------~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq-~~e~e~~~q~ls~~~Q~~~ 481 (1195)
T KOG4643|consen 410 HKNLSKKHE-------ILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ-SLENEELDQLLSLQDQLEA 481 (1195)
T ss_pred hHhHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHhHHHHHHHHHHHHHHH
Confidence 22 111111 13333344444444555555555555555554433222111111 0011222333332 22333
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--------------------hHHHHHHHHHHHHHHHH
Q 006784 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSRE--------------------EHMELEKRYRELTDLLY 558 (631)
Q Consensus 499 Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq--------------------~~~ELE~RlrELTdlLy 558 (631)
+.+-++.....+..-|..-..++--+...+..+++|...-+.+ +-.-|-+++.-|... -
T Consensus 482 et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-~ 560 (1195)
T KOG4643|consen 482 ETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT-S 560 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-h
Confidence 3344444444444445555555555555555666655433322 123333444444433 4
Q ss_pred HHHHHHHHhhhHH
Q 006784 559 YKQTQLETMASEK 571 (631)
Q Consensus 559 ~KQTqLEaLatEK 571 (631)
+|+++||---.++
T Consensus 561 qn~~~LEq~~n~l 573 (1195)
T KOG4643|consen 561 QNGALLEQNNNDL 573 (1195)
T ss_pred HHHHHHHHhhhHH
Confidence 8888887655554
No 48
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=6.4 Score=47.88 Aligned_cols=122 Identities=17% Similarity=0.236 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 006784 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHN-----ATKMAAMEREVELE 424 (631)
Q Consensus 350 vrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah~-----atr~aamERE~eLE 424 (631)
....-..+++......|.-+ ..|+-++-.-.....+..+.+++.+.+.+++..+.... ...++++.-+++-+
T Consensus 708 ~kf~~l~~ql~l~~~~l~l~---~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~ 784 (1174)
T KOG0933|consen 708 QKFRDLKQQLELKLHELALL---EKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKAN 784 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 33444445555554555444 33333333333466788899999999999988887742 22333333333333
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 425 HR--AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (631)
Q Consensus 425 ~q--~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~ 474 (631)
++ +.++..-|.-+.+++++.++++..-++.+..+..+++.+.+++.-+|.
T Consensus 785 re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~ 836 (1174)
T KOG0933|consen 785 RERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQ 836 (1174)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 555555555556666666666666666666666666666666655543
No 49
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.85 E-value=7.2 Score=48.39 Aligned_cols=8 Identities=25% Similarity=0.534 Sum_probs=5.5
Q ss_pred CCCCCccc
Q 006784 150 ATPNGEIL 157 (631)
Q Consensus 150 ~~~nge~~ 157 (631)
++|+|-++
T Consensus 636 v~p~~~~~ 643 (1353)
T TIGR02680 636 VTADGTLQ 643 (1353)
T ss_pred eCCCcccc
Confidence 67777764
No 50
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.75 E-value=3.6 Score=44.13 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHHHHHHHH
Q 006784 489 QAIQMQAWQDEVERARQGQRDAENK----LSSLEAEVQKMRVE 527 (631)
Q Consensus 489 q~ie~~~~q~Eve~aR~~qreae~~----lss~~aElq~lr~E 527 (631)
-..++..++.||.+.|+....++.. +..+.++...++.|
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireE 269 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREE 269 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4447788888888877766555443 33344444444444
No 51
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.72 E-value=6.1 Score=46.55 Aligned_cols=72 Identities=22% Similarity=0.305 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006784 497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSR--EEHMELEKRYRELTDLLYYKQTQLETMA 568 (631)
Q Consensus 497 q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~sr--q~~~ELE~RlrELTdlLy~KQTqLEaLa 568 (631)
.+|+.+.+-...-++...+.+..|+-+|..|...|+.-++.|+- -.--.|.-||..+-.|.-.|=--+|.|-
T Consensus 865 eGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELr 938 (961)
T KOG4673|consen 865 EGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEELR 938 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34556666677778888888999999999999999999988865 3446788899999888888877777653
No 52
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.56 E-value=2.8 Score=47.88 Aligned_cols=114 Identities=15% Similarity=0.127 Sum_probs=63.5
Q ss_pred HHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 006784 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNA----TKMAAMEREVELEHRAAEASMAL 434 (631)
Q Consensus 359 l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah~a----tr~aamERE~eLE~q~aEastAL 434 (631)
+..+..++..++.+...+...-++. +-.|..++.++++.+..+..|...... .-..+-.|+..|+.++++.-.-
T Consensus 290 i~~L~~~l~~l~~~~~~l~~~y~~~-hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~- 367 (754)
T TIGR01005 290 IQRLRERQAELRATIADLSTTMLAN-HPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAA- 367 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3344444444444444444333332 334677888888888888777665311 1122233444444444443222
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006784 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (631)
Q Consensus 435 a~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~ 477 (631)
-..+-.....+.+|+.++...+...+.+-+.+...+....
T Consensus 368 ---~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~~ 407 (754)
T TIGR01005 368 ---SAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQN 407 (754)
T ss_pred ---HHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2223344566778888888888888888877777665543
No 53
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.47 E-value=3.1 Score=41.46 Aligned_cols=157 Identities=23% Similarity=0.360 Sum_probs=117.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------CCCchHHHHHH-----HHHHHHHHHHHHHh
Q 006784 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ------KKSPEEANQAI-----QMQAWQDEVERARQ 505 (631)
Q Consensus 437 aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~l------kk~~E~agq~i-----e~~~~q~Eve~aR~ 505 (631)
.+|.+..+..++.+|++++.-+...++.+.-|..-++.--.|-. .++.....+.| ++..|+..+.....
T Consensus 3 ~~rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~ 82 (194)
T PF15619_consen 3 TQRVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQE 82 (194)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999988877766555532 22334445555 56778888888888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHhHHH
Q 006784 506 GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS----EKAAAEFQLEKE 581 (631)
Q Consensus 506 ~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLat----EKaAlqlQLER~ 581 (631)
..++++..+.....++..++.++..|+.-++.-.--+..+|..+|..++.-|..+--.+..|.- .-.+...||-.+
T Consensus 83 ~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e 162 (194)
T PF15619_consen 83 QERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASE 162 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8999999999999999999999888887766433457889999999999988877665555432 234455566666
Q ss_pred HHHHHHHHHHHH
Q 006784 582 MNRLQEVQSEAE 593 (631)
Q Consensus 582 ~~q~reaQ~e~e 593 (631)
.....+++.++.
T Consensus 163 ~kK~~~~~~~~~ 174 (194)
T PF15619_consen 163 KKKHKEAQEEVK 174 (194)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 54
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.47 E-value=0.075 Score=51.54 Aligned_cols=140 Identities=20% Similarity=0.328 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHH-----HHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 006784 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN-----QAI--QMQAWQDEVERARQGQRDAENKLSSLEAEV 521 (631)
Q Consensus 449 ~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~ag-----q~i--e~~~~q~Eve~aR~~qreae~~lss~~aEl 521 (631)
..|-.++..+++....|..+...... +...++++.+.+ +.+ .+-.|+.|+..++....++...|..+-.++
T Consensus 27 ~~L~d~~~~l~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l 104 (194)
T PF08614_consen 27 NRLADRTSLLKAENEQLQPEAESLPS--SSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDEL 104 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44556666777777766664444333 111111111111 111 335699999999999999999999988889
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q 006784 522 QKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSE 591 (631)
Q Consensus 522 q~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~reaQ~e 591 (631)
+.++.++.....-+.. -......|+.+++.|.+-|-.|+..++.|-.|..++++++--.+.+++..+.+
T Consensus 105 ~~l~~~~~~~~~~l~~-l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 105 QELEKELSEKERRLAE-LEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp ---------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887776666643 23466889999999999999999999999999999999999999888888766
No 55
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.39 E-value=0.0042 Score=72.24 Aligned_cols=289 Identities=24% Similarity=0.332 Sum_probs=0.0
Q ss_pred CcchhhhHHHHhhhHHHhhhhh-----------hhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006784 246 PTKEQDQLDEAQGLLKTTISTG-----------QSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIK 314 (631)
Q Consensus 246 p~k~q~ql~e~~~lL~~~~~~~-----------~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k 314 (631)
-.++..+|++++.-.-.+++.+ +....-|.|+-+.+-+.-+.+..|+.-|---|..........+...+
T Consensus 104 l~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K 183 (859)
T PF01576_consen 104 LAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRK 183 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 3455666666666555555555 33333344444444444455555555333333333334556667788
Q ss_pred HHHHHHhhhhhhhhhhh---hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHH
Q 006784 315 QLEQELSVYKSEVTKVE---SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQAL 391 (631)
Q Consensus 315 ~lQ~ELs~ar~~v~k~E---sdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaL 391 (631)
.+...|+..+..++.++ .+|....+--.+++..|...|+++...+.........|+....-+-....+ +++.-.+|
T Consensus 184 ~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~lee-Etr~k~~L 262 (859)
T PF01576_consen 184 QLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEE-ETRAKQAL 262 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-Hhhhhhhh
Confidence 88888888888887775 556666666667777777777777666555444333333333322222221 23333333
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-----HHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHH
Q 006784 392 -------REELASVERRAEEERAAHNAT--KMAAMEREV-----ELEHRAAEAS----MALARIQRIADERTAKAGELEQ 453 (631)
Q Consensus 392 -------REeLa~AE~rL~~Ereah~at--r~aamERE~-----eLE~q~aEas----tALa~aqR~~~E~k~Ka~eLeq 453 (631)
..++....-.+..|.+++... .+..+..|. .++.....-+ .+=..+++.+.+-...+.++..
T Consensus 263 ~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~ 342 (859)
T PF01576_consen 263 EKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANA 342 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555543111 111111111 1222211111 1212345555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC------CCchHHHHHH-----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 006784 454 KVAMLEVECATLQQELQDMEARLKRGQK------KSPEEANQAI-----QMQAWQDEVERARQGQRDAENKLSSLEAEVQ 522 (631)
Q Consensus 454 qv~~lka~~esl~QELqDyk~KA~R~lk------k~~E~agq~i-----e~~~~q~Eve~aR~~qreae~~lss~~aElq 522 (631)
++..++-.+.-|..|+.|+.....+... +-.-.+-..+ ....+..+.+.+....+.+...+-.+..++.
T Consensus 343 ~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~le 422 (859)
T PF01576_consen 343 KVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELE 422 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhH
Confidence 6666666666677777777665554421 1000011111 1122334445666666777767666666666
Q ss_pred HHHHHHHHHHHhh
Q 006784 523 KMRVEMAAMKRDA 535 (631)
Q Consensus 523 ~lr~E~a~lkrda 535 (631)
.+...+..+.+.-
T Consensus 423 e~~e~~e~lere~ 435 (859)
T PF01576_consen 423 ELQEQLEELEREN 435 (859)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555544
No 56
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.31 E-value=5.5 Score=43.36 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (631)
Q Consensus 343 SqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Erea 408 (631)
..++.++..+++....+......+..++.+...|-.+..+- ...|..+..++..++..+..-...
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~-~~~L~~l~~~~~~~~~~l~~~~~~ 277 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP-SAALNKLNTAAAKIKSKIEQFQKV 277 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777777777777776666665433322 345677777777777776555544
No 57
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.27 E-value=3.7 Score=41.19 Aligned_cols=124 Identities=19% Similarity=0.325 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHH--HHHHHHHHH
Q 006784 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI--QMQAWQDEV 500 (631)
Q Consensus 423 LE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~i--e~~~~q~Ev 500 (631)
.++...++..-|..++..+.....|+..++.++..++..+..+..-|..++........ --..+ .+..|...+
T Consensus 111 ~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~-----re~~~e~~i~~L~~~l 185 (237)
T PF00261_consen 111 AERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASE-----REDEYEEKIRDLEEKL 185 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhH-----HHHHHHHHHHHHHHHH
Confidence 44444455555555555666666666666666666666666666666665554431100 00011 223344444
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 006784 501 ERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTD 555 (631)
Q Consensus 501 e~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTd 555 (631)
.-+-..-..++..+..++.++..++.++...+.... .-..+|+.=|.+|++
T Consensus 186 keaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~----~~~~eld~~l~el~~ 236 (237)
T PF00261_consen 186 KEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK----KVQEELDQTLNELNE 236 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhC
Confidence 333333334444455555555555555555544442 234455555555543
No 58
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.22 E-value=6.5 Score=43.72 Aligned_cols=198 Identities=18% Similarity=0.137 Sum_probs=117.7
Q ss_pred HhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcc
Q 006784 262 TTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAK 341 (631)
Q Consensus 262 ~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAK 341 (631)
..|.....+...-..-.++|...|-+++.++.+++.-|..=..-...+.+.|..+...|+..+.+-..--.-|++.|+|-
T Consensus 45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~ 124 (420)
T COG4942 45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAAL 124 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555566677777778888888887777744444555666666666666665444422246677777664
Q ss_pred cch-----hHHHH--HHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 342 NSE-----IETLV--SSIDALKKQAALSEGNLASLQMNMESIMRNRELT--ETRMIQALREELASVERRAEEERAAHNAT 412 (631)
Q Consensus 342 dSq-----LavLk--vrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~--e~qalqaLREeLa~AE~rL~~Ereah~at 412 (631)
.-. ++.|. ..-+.+.+.+.-.-...-+....++.|-.+...- ..+.|.+=|++|..+......++..-..+
T Consensus 125 ~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~ 204 (420)
T COG4942 125 QRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQL 204 (420)
T ss_pred HhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 431 22221 1222223333333333334444455555554442 57788888888888888777666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006784 413 KMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ 466 (631)
Q Consensus 413 r~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~ 466 (631)
+.+.-. +++++.....+ -+.++.+-......|.+.+.+++.+.+..+
T Consensus 205 ~~E~kk----~~~~l~~~l~~---~q~~l~eL~~~~~~L~~~Ias~e~~aA~~r 251 (420)
T COG4942 205 LEERKK----TLAQLNSELSA---DQKKLEELRANESRLKNEIASAEAAAAKAR 251 (420)
T ss_pred HHHHHH----HHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 554444 44444433333 788888888999999999999886666443
No 59
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.86 E-value=0.15 Score=49.41 Aligned_cols=101 Identities=29% Similarity=0.331 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhH
Q 006784 267 GQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE 346 (631)
Q Consensus 267 ~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLa 346 (631)
++.-.+.+-|.|.++..+|-.+..+++.|+..+..-...+..|...+..|+.++ .++.+.|..|+.-++
T Consensus 79 l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~-----------~~l~~~l~ek~k~~e 147 (194)
T PF08614_consen 79 LQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKI-----------KDLEEELKEKNKANE 147 (194)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 344455667888888999999999998888887777777777777777777766 567788888999999
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhh
Q 006784 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (631)
Q Consensus 347 vLkvrLdeadq~l~~~~~~LeelQ~e~~RImq 378 (631)
.|...|....-.+.+.++++..|+.++..|+.
T Consensus 148 ~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 148 ILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887764
No 60
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.85 E-value=0.0075 Score=70.22 Aligned_cols=66 Identities=26% Similarity=0.297 Sum_probs=0.0
Q ss_pred HhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 006784 262 TTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (631)
Q Consensus 262 ~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v 327 (631)
.+++.+..+...-...++++.+.+-+|...+.-|++-|-+|+..-...+..-.+|..||-..+.+.
T Consensus 18 ~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~L 83 (859)
T PF01576_consen 18 EELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERL 83 (859)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777888888888888888888888888776666666666766665544443
No 61
>PF13514 AAA_27: AAA domain
Probab=94.81 E-value=13 Score=45.00 Aligned_cols=174 Identities=22% Similarity=0.226 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHH
Q 006784 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ 489 (631)
Q Consensus 410 ~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq 489 (631)
|..-|...-+=.+.=..-++.+.-|..+++.+.....++..++.++..+....+.+.......=.-+. .+.+|
T Consensus 528 fe~a~~~aD~laD~~~~~a~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g--~p~~p----- 600 (1111)
T PF13514_consen 528 FEAAVREADELADRRLREAERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAG--LPLSP----- 600 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCh-----
Confidence 44444444444444444566666666777777777777777777777777777777766665543332 33333
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 490 AIQMQAWQDEVERARQGQRDAEN---KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLET 566 (631)
Q Consensus 490 ~ie~~~~q~Eve~aR~~qreae~---~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEa 566 (631)
-.|..|....+.++.....+.. .+....+.+..++..+...-..+.. ..+-..|=...+.+-+-+..-...++.
T Consensus 601 -~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~--~~~l~~~l~~a~~~~~~~~~~~~~~~~ 677 (1111)
T PF13514_consen 601 -AEMRDWLARREAALEAAEELRAARAELEALRARRAAARAALAAALAALGP--AEELAALLEEAEALLEEWEQAAARREQ 677 (1111)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888777766655544433 3333444444444444433333322 000111111122222333334445566
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 006784 567 MASEKAAAEFQLEKEMNRLQEVQSEAE 593 (631)
Q Consensus 567 LatEKaAlqlQLER~~~q~reaQ~e~e 593 (631)
+..+...+.-+++.....+..++...+
T Consensus 678 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1111)
T PF13514_consen 678 LEEELQQLEQELEEAEAELQEAQEALE 704 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677777777666666665444
No 62
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.79 E-value=15 Score=45.72 Aligned_cols=122 Identities=21% Similarity=0.231 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH---hcccchh
Q 006784 269 SKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEAL---AAKNSEI 345 (631)
Q Consensus 269 ~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAl---aAKdSqL 345 (631)
.++....+-++.|..+|..++.+...++ .....+.++...|..++...-. +.+|..|+ ......+
T Consensus 735 aR~~~R~~ri~el~~~IaeL~~~i~~l~-------~~l~~l~~r~~~L~~e~~~~Ps-----~~dL~~A~~~l~~A~~~~ 802 (1353)
T TIGR02680 735 ARERARLRRIAELDARLAAVDDELAELA-------RELRALGARQRALADELAGAPS-----DRSLRAAHRRAAEAERQA 802 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhCCC-----chHHHHHHHHHHHHHHHH
Confidence 3444445545555555555555444332 2334555666666665533222 33333332 2223344
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhh-hhHHHHHHHHHHHHHHHHH
Q 006784 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT-ETRMIQALREELASVERRA 402 (631)
Q Consensus 346 avLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~-e~qalqaLREeLa~AE~rL 402 (631)
+.-..++..++..+......++.........-.++... ....+++++..|....+.+
T Consensus 803 ~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l 860 (1353)
T TIGR02680 803 ESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHL 860 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555553 3555555666555554444
No 63
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.63 E-value=18 Score=45.82 Aligned_cols=48 Identities=4% Similarity=0.097 Sum_probs=20.2
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhh
Q 006784 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (631)
Q Consensus 334 lteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~ 381 (631)
|-.-+.-=.+.++.+...+....+++...+..+..++.....++...+
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~G 487 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAG 487 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333333333444444444444444444444444444444444444333
No 64
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.55 E-value=3.6 Score=42.52 Aligned_cols=93 Identities=20% Similarity=0.373 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 006784 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSS 516 (631)
Q Consensus 437 aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss 516 (631)
+-+.+.+-.-...+++.+|..++..+..++..+.+.+.+-. ++.-.-++.+|..|+.++......++.+|..
T Consensus 43 ~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~--------~v~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 43 LNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS--------AVKDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555554444443331 1222336778888898888888899999988
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 006784 517 LEAEVQKMRVEMAAMKRDAEH 537 (631)
Q Consensus 517 ~~aElq~lr~E~a~lkrda~~ 537 (631)
+..++..++.++..++..+..
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777777653
No 65
>PRK11281 hypothetical protein; Provisional
Probab=94.45 E-value=17 Score=44.81 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=36.9
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 421 VELEHR-AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (631)
Q Consensus 421 ~eLE~q-~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA 476 (631)
.++.++ +.+..+-..-.+-+.+.-+.+...+++++..+...+..-+++..+...+.
T Consensus 208 ~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~ 264 (1113)
T PRK11281 208 NDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQE 264 (1113)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 44444444444555577788899999999988888877777666654433
No 66
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.41 E-value=4.1 Score=37.61 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=84.2
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREV 421 (631)
Q Consensus 342 dSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~ 421 (631)
...++.....+..+..-+..........|..-++=|.-|... ..+|.+||+++......+..=+..-..++...-.-+.
T Consensus 16 ~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~ 94 (132)
T PF07926_consen 16 KEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED-IKELQQLREELQELQQEINELKAEAESAKAELEESEA 94 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777777777777888888888888888888887 8899999999999888775555545555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006784 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATL 465 (631)
Q Consensus 422 eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl 465 (631)
.|+.+-.. ++..+.+-+.|+.+|..|=..|=..++++
T Consensus 95 sw~~qk~~-------le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 95 SWEEQKEQ-------LEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred hHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67666433 55667777778888887777766665553
No 67
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.15 E-value=10 Score=41.12 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 006784 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENK 513 (631)
Q Consensus 434 La~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~ 513 (631)
|..++..+.+-..++.+=+-+|..++.+++.+++.+........... ......+... + .+...
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~-~~~~~~~~~~--~--------------~l~~~ 318 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGP-ERGEIANPVY--Q--------------QLQIE 318 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCc-ccccccChHH--H--------------HHHHH
Confidence 44455556666666777777777778888888777766543221100 0001111111 1 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q 006784 514 LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSE 591 (631)
Q Consensus 514 lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~reaQ~e 591 (631)
+...+.++..++..+..+++.+ .+++.++.. +-.++.++.+|-.|....+-.++-.++++.+++..
T Consensus 319 l~~~~~~~~~l~~~~~~l~~~~--------~~~~~~~~~----~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 319 LAEAEAEIASLEARVAELTARI--------ERLESLLRT----IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHh----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333333333333333333333 223333333 33557777777777777777777778888877754
No 68
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.14 E-value=8.1 Score=39.94 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=14.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 441 ADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (631)
Q Consensus 441 ~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk 473 (631)
+..-+.....++.++..++..+..++.++.-++
T Consensus 153 i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~ 185 (423)
T TIGR01843 153 IKQLEAELAGLQAQLQALRQQLEVISEELEARR 185 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444555555554444444433
No 69
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.13 E-value=18 Score=43.96 Aligned_cols=88 Identities=19% Similarity=0.324 Sum_probs=58.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh----h------hhHHHHH--hcccchhHHHHH
Q 006784 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV----E------SNLAEAL--AAKNSEIETLVS 350 (631)
Q Consensus 283 ~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~----E------sdlteAl--aAKdSqLavLkv 350 (631)
.+|+..|.+|+||+|. .+.+.+....||.+|-.+|.+..-+ | +|+++++ +.-|-++| .-
T Consensus 255 ~ElekmkiqleqlqEf-------kSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmA--EE 325 (1243)
T KOG0971|consen 255 KELEKMKIQLEQLQEF-------KSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMA--EE 325 (1243)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HH
Confidence 4577778888887764 4566777778888887777665543 1 6666654 33333333 35
Q ss_pred HHHHHHHHHHhhHhHHHHHHhhhhHhhhh
Q 006784 351 SIDALKKQAALSEGNLASLQMNMESIMRN 379 (631)
Q Consensus 351 rLdeadq~l~~~~~~LeelQ~e~~RImqd 379 (631)
|.+..++.+.+.++.+++|..+.+=|-..
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaE 354 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAE 354 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888888888877655433
No 70
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.10 E-value=8.3 Score=39.88 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=20.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 445 TAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (631)
Q Consensus 445 k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA 476 (631)
..+..+++.++..++..+..++..|..+..+|
T Consensus 245 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~A 276 (423)
T TIGR01843 245 LEELTEAQARLAELRERLNKARDRLQRLIIRS 276 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcEEEC
Confidence 34556667777777777777777776654444
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.99 E-value=11 Score=41.01 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006784 546 LEKRYRELTDLLYYKQTQLETMASEKAAA 574 (631)
Q Consensus 546 LE~RlrELTdlLy~KQTqLEaLatEKaAl 574 (631)
|+.+..++.+-|-.-...|..+..+++.+
T Consensus 370 l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 370 LQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444433
No 72
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.89 E-value=11 Score=40.74 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 006784 268 QSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTK 329 (631)
Q Consensus 268 ~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k 329 (631)
..+...+..-+.+....|..+|.+|. +.-.+ ....+.+++.+++++++.++.+...
T Consensus 167 ~~ql~~~~~~L~~ae~~l~~f~~~~~----~~~~~--~~~~~~~~l~~l~~~l~~~~~~l~~ 222 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENRLKAFKQENG----GILPD--QEGDYYSEISEAQEELEAARLELNE 222 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc----ccCcc--chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555554443 11111 1233445566666666555444433
No 73
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.59 E-value=20 Score=42.45 Aligned_cols=128 Identities=25% Similarity=0.342 Sum_probs=82.4
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNA 411 (631)
Q Consensus 332 sdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah~a 411 (631)
..|-..|.-++-.|+.|...|..+.+-+...+..-+++..+..+ .+...-.+|+++.++.|.++ +|+=+...
T Consensus 524 qqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~-------QQ~~y~~alqekvsevEsrl-~E~L~~~E 595 (739)
T PF07111_consen 524 QQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQ-------QQEVYERALQEKVSEVESRL-REQLSEME 595 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 55556666667777777777777777776666666665332211 12334457888888888887 55555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 006784 412 TKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQK-VAMLEVECATLQQELQDME 473 (631)
Q Consensus 412 tr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqq-v~~lka~~esl~QELqDyk 473 (631)
.|++-+.|| -+-++-+|--++|++.-+|-|-.++-.- =...+-+-.-|.+.|++.+
T Consensus 596 ~rLNeARRE------HtKaVVsLRQ~qrqa~reKer~~E~~~lq~e~~~~e~~rl~~rlqele 652 (739)
T PF07111_consen 596 KRLNEARRE------HTKAVVSLRQIQRQAAREKERNQELRRLQEEARKEEGQRLTQRLQELE 652 (739)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444 4678999999999999998777665432 2334455666777777633
No 74
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.51 E-value=24 Score=43.32 Aligned_cols=217 Identities=17% Similarity=0.252 Sum_probs=106.9
Q ss_pred hHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 006784 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331 (631)
Q Consensus 252 ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~E 331 (631)
||++-...|-....++ ..-..++.++..++.+++.+..-+++.|.+=.+ ...+..++.+|..++.=+ .|.-++
T Consensus 208 ~L~qi~~~~~~~~~~~----~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~-~e~~~~~l~~Lk~k~~W~--~V~~~~ 280 (1074)
T KOG0250|consen 208 QLEQITESYSEIMESL----DHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQ-LEDLKENLEQLKAKMAWA--WVNEVE 280 (1074)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 4555444443333332 234455666666777777776666666652111 223334444444444222 222222
Q ss_pred hhHHHH---HhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 332 SNLAEA---LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (631)
Q Consensus 332 sdlteA---laAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Erea 408 (631)
.+|..+ +--+.--...|..+++.........+.+|-+.+.....|+.... .+..=++.+|+.|..+-+......+.
T Consensus 281 ~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~-~~d~Ei~~~r~~~~~~~re~~~~~~~ 359 (1074)
T KOG0250|consen 281 RQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVD-AQDEEIEEARKDLDDLRREVNDLKEE 359 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 11222222333333333333333344444444444444443322 22222333444433333322222111
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006784 409 -------HNATKMAAMEREVELEHRAAEASMAL-ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (631)
Q Consensus 409 -------h~atr~aamERE~eLE~q~aEastAL-a~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~l 480 (631)
-.+.|-.-.. +|++++..=.-+ ...+-.+.+.--+...|+++|..++-...+|+.|+.+.+.++..+.
T Consensus 360 ~~~~~n~i~~~k~~~d~----l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 360 IREIENSIRKLKKEVDR----LEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 1333433333 666666554444 5567777788888888888888888888888888888888887544
No 75
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.23 E-value=27 Score=42.95 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 006784 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSS 516 (631)
Q Consensus 437 aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss 516 (631)
.......=+.....++-++..++-.+..+..+|.|-+.+-+.+=. +-.+....++....+...--.....++.++..
T Consensus 841 ~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt---~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~ 917 (1174)
T KOG0933|consen 841 LEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDT---EISGLLTSQEKCLSEKSDGELERKKLEHEVTK 917 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhH---HHhhhhhHHHHHHHHhhcccchHHHHHhHHHH
Confidence 333344444555555555666666666667777776666554321 22222223333333333222223344445555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 006784 517 LEAEVQKMRVEMAAMKRDAEHY 538 (631)
Q Consensus 517 ~~aElq~lr~E~a~lkrda~~~ 538 (631)
+..+-..++.+|..|....+..
T Consensus 918 ~~~e~~~~~k~v~~l~~k~~wi 939 (1174)
T KOG0933|consen 918 LESEKANARKEVEKLLKKHEWI 939 (1174)
T ss_pred hhhhHHHHHHHHHHHHHhccch
Confidence 5555555555555555544433
No 76
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=92.84 E-value=14 Score=38.70 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=79.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 006784 445 TAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKM 524 (631)
Q Consensus 445 k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~l 524 (631)
+....-+++++..++..+..+.+.|.+|+.+..-+. +...+... ..-++.++.++..+
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d--~~~~~~~~--------------------~~~i~~L~~~l~~~ 226 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD--PKAQSSAQ--------------------LSLISTLEGELIRV 226 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--hHHHHHHH--------------------HHHHHHHHHHHHHH
Confidence 445567889999999999999999999998865442 22222211 12244455555555
Q ss_pred HHHHHHHHHhhhh-hhh-----hhHHHHHHHHHHHHH--------HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 006784 525 RVEMAAMKRDAEH-YSR-----EEHMELEKRYRELTD--------LLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 590 (631)
Q Consensus 525 r~E~a~lkrda~~-~sr-----q~~~ELE~RlrELTd--------lLy~KQTqLEaLatEKaAlqlQLER~~~q~reaQ~ 590 (631)
+.+++.++.-... ++. .....|++++.+... .|=.+..+++.|-.|....+-.++..+.++.+++.
T Consensus 227 ~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~ 306 (362)
T TIGR01010 227 QAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRV 306 (362)
T ss_pred HHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555432221 111 122333333333222 34566778899999999999999999999999997
Q ss_pred HHH
Q 006784 591 EAE 593 (631)
Q Consensus 591 e~e 593 (631)
++.
T Consensus 307 ~~~ 309 (362)
T TIGR01010 307 EAD 309 (362)
T ss_pred HHH
Confidence 754
No 77
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.77 E-value=9.1 Score=36.35 Aligned_cols=88 Identities=25% Similarity=0.348 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006784 388 IQALREELASVERRAEEERAAHNATKMAAME-REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ 466 (631)
Q Consensus 388 lqaLREeLa~AE~rL~~Ereah~atr~aamE-RE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~ 466 (631)
|+.+.+.|..+...+..-- +..+..+.+. |=.-||.++..+-..|..+.-++.+-..++..++-+|+.++......-
T Consensus 51 ld~~~~~l~~~k~~lee~~--~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 51 LDKLEEQLKEAKEKLEESE--KRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWE 128 (143)
T ss_pred HHHHHHHHHHHHHHHHhHH--HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 5666777777777764332 2222223333 334578889999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHh
Q 006784 467 QELQDMEARLK 477 (631)
Q Consensus 467 QELqDyk~KA~ 477 (631)
..+-.+..+-.
T Consensus 129 ~k~eel~~k~~ 139 (143)
T PF12718_consen 129 EKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHH
Confidence 88888766543
No 78
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.74 E-value=0.032 Score=63.44 Aligned_cols=208 Identities=21% Similarity=0.284 Sum_probs=0.0
Q ss_pred hHHHhhhhhhhHHHHHH---HHHhhhhhhhhhhhhhhHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHhhhhhhhh
Q 006784 259 LLKTTISTGQSKEARLA---RVCAGLSSRLQEYKSENAQLEELLVAEREL-------SRSYEARIKQLEQELSVYKSEVT 328 (631)
Q Consensus 259 lL~~~~~~~~~ke~rL~---rv~~qls~rLs~lr~EN~QLEeLLr~E~~~-------~~Sl~ar~k~lQ~ELs~ar~~v~ 328 (631)
.+..+|..++.+...|. +....|+-.|+.||-...+++.| -++++. +..|..+++.|++.-....-...
T Consensus 271 ~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~kl-E~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~ 349 (713)
T PF05622_consen 271 ELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKL-ENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKA 349 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544 55666666666666655543332 122222 66677777777776665555555
Q ss_pred hhhhhHHHHHhcccchhHHHHHHHHHHHHH--------------HHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHH
Q 006784 329 KVESNLAEALAAKNSEIETLVSSIDALKKQ--------------AALSEGNLASLQMNMESIMRNRELTETRMIQALREE 394 (631)
Q Consensus 329 k~EsdlteAlaAKdSqLavLkvrLdeadq~--------------l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREe 394 (631)
..|+.+.-+-+.+ ++|..++..+.+..+. .....+.+.+++.++++++..+.. +...-++
T Consensus 350 ~LEeel~~~~~~~-~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~-----L~e~~ee 423 (713)
T PF05622_consen 350 MLEEELKKARALK-SQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDS-----LRETNEE 423 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 5566666654443 5665555555444443 344455666666666666543321 1111111
Q ss_pred HHHHHH-----------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHH
Q 006784 395 LASVER-----------------RAEEERAA-HNATKMAAMEREVELEHRAAEAS--MALARIQRIADERTAKAGELEQK 454 (631)
Q Consensus 395 La~AE~-----------------rL~~Erea-h~atr~aamERE~eLE~q~aEas--tALa~aqR~~~E~k~Ka~eLeqq 454 (631)
|+-+.. .|..|... ....|+...++|.+.=+...+.. ..+..++..+++.+++...|+.+
T Consensus 424 L~~~~~~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~ 503 (713)
T PF05622_consen 424 LECSQAQQEQLSQSGEESSSSGDNLSAELNPAELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEE 503 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccccccccccccccccccccchhhhccchHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 12222211 12223333333332211111222 33456788888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006784 455 VAMLEVECATLQQELQDME 473 (631)
Q Consensus 455 v~~lka~~esl~QELqDyk 473 (631)
...+...+..|++++.+..
T Consensus 504 ~~~~~~~~~~lq~qle~lq 522 (713)
T PF05622_consen 504 NREANEKILELQSQLEELQ 522 (713)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6665555555555554443
No 79
>PF13514 AAA_27: AAA domain
Probab=92.58 E-value=31 Score=41.92 Aligned_cols=260 Identities=23% Similarity=0.323 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcc----c-------------chhHHHHHHHHHHHHHHHhhHhHHHHH
Q 006784 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAK----N-------------SEIETLVSSIDALKKQAALSEGNLASL 369 (631)
Q Consensus 307 ~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAK----d-------------SqLavLkvrLdeadq~l~~~~~~Leel 369 (631)
..+.......+.++..+..+++.|...+.++|+.. + .++..+...+.....++..++..+...
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f 762 (1111)
T PF13514_consen 683 QQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRIEQMEADLAAF 762 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566666666666654444444322 0 012222233333333444444444444
Q ss_pred HhhhhHhhhhhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 370 QMNMESIMRNRELT-----ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADER 444 (631)
Q Consensus 370 Q~e~~RImqdh~~~-----e~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~ 444 (631)
......|....... -..++..|+.+|..+......=.. ...+. ..++.++......|..++..+..-
T Consensus 763 ~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~--l~~~~------~~~~~~~~~~~~~l~~~~~~l~~L 834 (1111)
T PF13514_consen 763 EEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERER--LQEQL------EELEEELEQAEEELEELEAELAEL 834 (1111)
T ss_pred HHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443331 237899999998888765321111 11111 112223333333333333333221
Q ss_pred H--h---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CchHHHHHH---HHHHHHHHHHHHHhhhhhHHHHHH
Q 006784 445 T--A---KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK-SPEEANQAI---QMQAWQDEVERARQGQRDAENKLS 515 (631)
Q Consensus 445 k--~---Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk-~~E~agq~i---e~~~~q~Eve~aR~~qreae~~ls 515 (631)
- . ...+|...+. .-.....+.+++.+.+.....+.++ +.+.....+ ....|..++.........++..+.
T Consensus 835 ~~~a~~~~~e~l~~~~~-~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~ 913 (1111)
T PF13514_consen 835 LEQAGVEDEEELREAEE-RAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELEEELEELEEELE 913 (1111)
T ss_pred HHhccCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1223332222 2223455666666666665544433 222222222 334455555544444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HhHHHHHHHHHH
Q 006784 516 SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEF---QLEKEMNRLQEV 588 (631)
Q Consensus 516 s~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlql---QLER~~~q~rea 588 (631)
.+..++-.++.+|..|..+-. |-++..-+....+.|+.++-++.++.+ =|++....|++.
T Consensus 914 ~l~~~~~~~~~~l~~l~~~~~-------------~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~ 976 (1111)
T PF13514_consen 914 ELQEERAELEQELEALEGDDD-------------AAELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYREE 976 (1111)
T ss_pred HHHHHHHHHHHHHHHHhCCch-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433321 112222223333445555555554443 355555556554
No 80
>PRK11281 hypothetical protein; Provisional
Probab=92.49 E-value=34 Score=42.29 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q 006784 548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (631)
Q Consensus 548 ~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~rea 588 (631)
..=++|++-|..=-+.++.+..+.....-+|++.-++.+-.
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i 325 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNI 325 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888777789999999988888999988888833
No 81
>PRK03918 chromosome segregation protein; Provisional
Probab=92.44 E-value=25 Score=40.62 Aligned_cols=25 Identities=16% Similarity=0.521 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 449 GELEQKVAMLEVECATLQQELQDME 473 (631)
Q Consensus 449 ~eLeqqv~~lka~~esl~QELqDyk 473 (631)
..+..++..++.....++.++...+
T Consensus 401 ~~l~~~i~~l~~~~~~~~~~i~eL~ 425 (880)
T PRK03918 401 EEIEEEISKITARIGELKKEIKELK 425 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554444444433
No 82
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.38 E-value=1 Score=51.66 Aligned_cols=34 Identities=32% Similarity=0.571 Sum_probs=25.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006784 445 TAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (631)
Q Consensus 445 k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R 478 (631)
..++..|+.++..++.+...|.+++..++.+..+
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566668888888888888888888877766654
No 83
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.04 E-value=35 Score=41.41 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (631)
Q Consensus 435 a~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~K 475 (631)
..++|....-..|..+..-.+.+++.++..+.-|+...+..
T Consensus 476 e~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 476 EELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555566666666666666666666665554433
No 84
>PRK03918 chromosome segregation protein; Provisional
Probab=92.02 E-value=28 Score=40.24 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006784 544 MELEKRYRELTDLLYYKQTQLETMASEKAAA 574 (631)
Q Consensus 544 ~ELE~RlrELTdlLy~KQTqLEaLatEKaAl 574 (631)
.+|+.+|.++..-+-..+.+++.+-.+...+
T Consensus 669 ~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 669 LELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555665555554444
No 85
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.70 E-value=21 Score=38.06 Aligned_cols=204 Identities=13% Similarity=0.142 Sum_probs=100.1
Q ss_pred HhhhHHHhhhhh-hhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH--h-------HHHHHHHHHHHHHHhhhhh
Q 006784 256 AQGLLKTTISTG-QSKEARLARVCAGLSSRLQEYKSENAQLEELLVAEREL--S-------RSYEARIKQLEQELSVYKS 325 (631)
Q Consensus 256 ~~~lL~~~~~~~-~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~--~-------~Sl~ar~k~lQ~ELs~ar~ 325 (631)
+|.+...-+.+. ..|.....+...-+..+|..++.+....|.-|..=... + .-..+++.++...|..++.
T Consensus 150 ~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~ 229 (444)
T TIGR03017 150 ANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQA 229 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHH
Confidence 444444444333 44555555666666777777777666666655521111 1 1112344555555544444
Q ss_pred hhhhhhhhHHH-------HHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHH
Q 006784 326 EVTKVESNLAE-------ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASV 398 (631)
Q Consensus 326 ~v~k~Esdlte-------AlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~A 398 (631)
+....+..+.. .-...+..|..|+ ..|..++.+...+...-++ .+-.|..++.+++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~--------------~~l~~le~~l~~l~~~y~~-~hP~v~~l~~~i~~l 294 (444)
T TIGR03017 230 QVMDASSKEGGSSGKDALPEVIANPIIQNLK--------------TDIARAESKLAELSQRLGP-NHPQYKRAQAEINSL 294 (444)
T ss_pred HHHHHHHHHhccCCcccchhhhcChHHHHHH--------------HHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHH
Confidence 43322211100 0011223333333 3333333333333222222 334455678888888
Q ss_pred HHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 399 ERRAEEERAAH-NATK---MAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (631)
Q Consensus 399 E~rL~~Ereah-~atr---~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~ 474 (631)
+..+..|-..- ...+ ...-.|+..|+.++.+.-..+ ..+......+..|+.++..++.....+-+.+.+.+.
T Consensus 295 ~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l 370 (444)
T TIGR03017 295 KSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKV----LELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRI 370 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776654331 1111 112233444444444322221 233344556888999999999999999998888876
Q ss_pred HHhc
Q 006784 475 RLKR 478 (631)
Q Consensus 475 KA~R 478 (631)
....
T Consensus 371 ~~~~ 374 (444)
T TIGR03017 371 EAQS 374 (444)
T ss_pred Hhcc
Confidence 6543
No 86
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.63 E-value=17 Score=38.19 Aligned_cols=127 Identities=28% Similarity=0.337 Sum_probs=93.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHH
Q 006784 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349 (631)
Q Consensus 270 ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLk 349 (631)
|-.-+.-+..+|-..+..|+.+.+.|...+..-....-.+..+-..|..++...+..+...++ .-..+|+.|+
T Consensus 143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~-------~D~~eL~~lr 215 (325)
T PF08317_consen 143 RMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIES-------CDQEELEALR 215 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------cCHHHHHHHH
Confidence 344567778888888899999999888888888888888888888899988887766655431 1235677777
Q ss_pred HHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006784 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (631)
Q Consensus 350 vrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~ 404 (631)
.+|.+.+..+..+...|++++.+...+-..-..... -++.++++++++++.++.
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~-~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEE-QKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 777777777777777788887777777666555433 345677788888877753
No 87
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.21 E-value=0.2 Score=57.22 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=0.0
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhh
Q 006784 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (631)
Q Consensus 333 dlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~ 382 (631)
++..+|..-.-.-++|..++....-.+..++..+..|+.++..+......
T Consensus 340 ~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~ 389 (722)
T PF05557_consen 340 DLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEE 389 (722)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666677777788888777888888888888777776555444
No 88
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.03 E-value=46 Score=40.80 Aligned_cols=126 Identities=21% Similarity=0.295 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHH
Q 006784 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI 388 (631)
Q Consensus 309 l~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qal 388 (631)
|.+.+++|.++|-.+|.+ |.|| +.+|-|.+ -+.=.|+.+|+=+++||....+
T Consensus 229 Lr~QvrdLtEkLetlR~k--R~ED----------------k~Kl~Ele----kmkiqleqlqEfkSkim~qqa~------ 280 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLK--RAED----------------KAKLKELE----KMKIQLEQLQEFKSKIMEQQAD------ 280 (1243)
T ss_pred HHHHHHHHHHHHHHHHhh--hhhh----------------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH------
Confidence 778889998888555322 2222 22333332 3445677777779999876554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006784 389 QALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQE 468 (631)
Q Consensus 389 qaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QE 468 (631)
|+-+|-.|...+++=+++ +-. .-..+++.+.++-++.=--.+.--|++-|++.|.+++-.++.|--+
T Consensus 281 --Lqrel~raR~e~keaqe~----ke~-------~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletd 347 (1243)
T KOG0971|consen 281 --LQRELKRARKEAKEAQEA----KER-------YKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETD 347 (1243)
T ss_pred --HHHHHHHHHHHHHHHHHH----HHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333222222222 111 2223444445544455455555668888999999988888888777
Q ss_pred HHHHHHH
Q 006784 469 LQDMEAR 475 (631)
Q Consensus 469 LqDyk~K 475 (631)
|--+|..
T Consensus 348 lEILKaE 354 (1243)
T KOG0971|consen 348 LEILKAE 354 (1243)
T ss_pred HHHHHHH
Confidence 7554433
No 89
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.58 E-value=20 Score=35.80 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006784 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE 570 (631)
Q Consensus 496 ~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatE 570 (631)
++.++...+..+..++.....+..|+..+..=...+=.++-.-.-.-..=||+++..|++.|=.|..||..+-+-
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~ 172 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455556666666666666665554444445443233456789999999999999999999876543
No 90
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.57 E-value=16 Score=34.74 Aligned_cols=20 Identities=45% Similarity=0.626 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 006784 385 TRMIQALREELASVERRAEE 404 (631)
Q Consensus 385 ~qalqaLREeLa~AE~rL~~ 404 (631)
++=|+.|-++|..++.+|..
T Consensus 79 ~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 79 NRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 56678888888888888843
No 91
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.64 E-value=34 Score=37.03 Aligned_cols=215 Identities=19% Similarity=0.250 Sum_probs=114.4
Q ss_pred hHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 006784 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331 (631)
Q Consensus 252 ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~E 331 (631)
.|...|..||.++.+++-+.+.|..-...|+.---.+-..-+|=|+.+. ..|-.+|..|..|---.-..+.+=|
T Consensus 31 sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is------N~LlKkl~~l~keKe~L~~~~e~EE 104 (310)
T PF09755_consen 31 SLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFIS------NTLLKKLQQLKKEKETLALKYEQEE 104 (310)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777777777666666665555444444444444443 3455555555555544444555557
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHHHHh-hHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--
Q 006784 332 SNLAEALAAKNSEIETLVSSIDALKKQAAL-SEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA-- 408 (631)
Q Consensus 332 sdlteAlaAKdSqLavLkvrLdeadq~l~~-~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Erea-- 408 (631)
.-||..|..|=.+|-.-++.|.. .|.. .+-.+.-|+.-..++..+-.. -..-+.-|+.+--+-|.+|+.||++
T Consensus 105 E~ltn~L~rkl~qLr~EK~~lE~---~Le~EqE~~V~kL~k~i~~Le~e~~~-~q~~le~Lr~EKVdlEn~LE~EQE~lv 180 (310)
T PF09755_consen 105 EFLTNDLSRKLNQLRQEKVELEN---QLEQEQEYLVNKLQKKIERLEKEKSA-KQEELERLRREKVDLENTLEQEQEALV 180 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77777776666555555554322 1111 112223333333333322211 1233445666666688899999998
Q ss_pred -HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 409 -HNATKMAAMEREVE-LEHRAAEASMALARIQRIA--DERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (631)
Q Consensus 409 -h~atr~aamERE~e-LE~q~aEastALa~aqR~~--~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA 476 (631)
.---||..++-|.+ |+.++...+.+...--..+ ...+.-+..+...|..+..+|.-|++.|..++..-
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~ 252 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEH 252 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446666663332 2222332111100000000 11223345677788888888888998888665543
No 92
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=89.07 E-value=38 Score=36.87 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 384 ETRMIQALREELASVERRAEEERAA 408 (631)
Q Consensus 384 e~qalqaLREeLa~AE~rL~~Erea 408 (631)
-|..+...|.++..++.++.--...
T Consensus 244 ln~ql~~~~~~~~~~~a~l~~~~~~ 268 (458)
T COG3206 244 LNTQLQSARARLAQAEARLASLLQL 268 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666666666666544433
No 93
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.00 E-value=50 Score=38.16 Aligned_cols=209 Identities=22% Similarity=0.282 Sum_probs=111.7
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHH
Q 006784 289 KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLAS 368 (631)
Q Consensus 289 r~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~Lee 368 (631)
|.|.++|-+=|..=.+.+..|+++...|+-+++..|..+-+==+.+ -+.-+.+|..++.=+++........+-.+--
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~i---k~~ye~El~~ar~~l~e~~~~ra~~e~ei~k 117 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGI---KAKYEAELATARKLLDETARERAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcch---hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666667777777777777777777765443321111 1112334444444444443332222222222
Q ss_pred HHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 369 LQMNMESIMRNRELTETRMIQALREELASVERRAEEERA--AHNATKMAAMEREV-ELEHRAAEASMALARIQRIADERT 445 (631)
Q Consensus 369 lQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ere--ah~atr~aamERE~-eLE~q~aEastALa~aqR~~~E~k 445 (631)
|+.+..-+...-.+. .+-+..-|+.+...+.+|-.=.. +++-.|..+|+=|. .|-++..-.-..|.++-..+++++
T Consensus 118 l~~e~~elr~~~~~~-~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 118 LREELKELRKKLEKA-EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred hHHHHHHHHHHHHHH-HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 222222111111111 11222333333333333311110 13445555555332 344446666677888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccc-CCCchHHHHHH--HHHHHHHHHH
Q 006784 446 AKAGELEQKVAMLEVECATLQ----QELQDMEARLKRGQ-KKSPEEANQAI--QMQAWQDEVE 501 (631)
Q Consensus 446 ~Ka~eLeqqv~~lka~~esl~----QELqDyk~KA~R~l-kk~~E~agq~i--e~~~~q~Eve 501 (631)
.---+++.++..|..+|+-+. +|+.+-..++.|-. ..-.+.+-.-+ -|+.++.+-+
T Consensus 197 llr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye 259 (546)
T KOG0977|consen 197 LLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYE 259 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 88888888888776 44444444444 2244444443
No 94
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.44 E-value=69 Score=39.09 Aligned_cols=142 Identities=24% Similarity=0.343 Sum_probs=72.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-chHH--------HHHH--HHHHHHHHHHHHHhhhhh
Q 006784 441 ADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKS-PEEA--------NQAI--QMQAWQDEVERARQGQRD 509 (631)
Q Consensus 441 ~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~-~E~a--------gq~i--e~~~~q~Eve~aR~~qre 509 (631)
+++-.+++.-.+++...++--..-|.+++.|+..|-..++|.- ++.- +..+ ++..++++...+-...++
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~ 491 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTES 491 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4444444444555555555555555555555555555554321 0000 0011 122233333333334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHhHHHHHHHH
Q 006784 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS---EKAAAEFQLEKEMNRLQ 586 (631)
Q Consensus 510 ae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLat---EKaAlqlQLER~~~q~r 586 (631)
....++++++|+..+--|++.+.+-+.+ +++++. +.+-+|.+.|-+|=.++..+.. |+.++-|.+||.+.+++
T Consensus 492 ~~~~le~l~~El~~l~~e~~~lq~~~~~-~~qs~~---~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~ 567 (980)
T KOG0980|consen 492 QAKALESLRQELALLLIELEELQRTLSN-LAQSHN---NQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLE 567 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Confidence 5555666666666666667777766544 334443 3455677778777777666654 24555566666654444
No 95
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.53 E-value=43 Score=35.71 Aligned_cols=99 Identities=17% Similarity=0.247 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhh--hhhHH---HHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhh
Q 006784 306 SRSYEARIKQLEQELSVYKSEVTKV--ESNLA---EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (631)
Q Consensus 306 ~~Sl~ar~k~lQ~ELs~ar~~v~k~--Esdlt---eAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh 380 (631)
..-+..+++.++++|..+.....+. +..+. +.+.....+|..|..++..++.++......+..... . ..+ -
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~-~-~~~--~ 248 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSG-K-DAL--P 248 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-c-ccc--h
Confidence 5667777888888887777776666 22222 111122345556655555555554433333321110 0 001 1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 381 ELTETRMIQALREELASVERRAEEERAA 408 (631)
Q Consensus 381 ~~~e~qalqaLREeLa~AE~rL~~Erea 408 (631)
....+..++.|+.+|.+.+..+..-+..
T Consensus 249 ~~~~~~~i~~l~~~l~~le~~l~~l~~~ 276 (444)
T TIGR03017 249 EVIANPIIQNLKTDIARAESKLAELSQR 276 (444)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235788999999999999998776554
No 96
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.19 E-value=66 Score=37.49 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=33.2
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhh-hhhHHHHHHHHHHH
Q 006784 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL-TETRMIQALREELA 396 (631)
Q Consensus 342 dSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~-~e~qalqaLREeLa 396 (631)
..++..|+...+..-..+.-++..|..|+..+.-....... +-+..-+.|++++.
T Consensus 35 seev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~ 90 (617)
T PF15070_consen 35 SEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAE 90 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHH
Confidence 45677788887777777888888888887666554432222 22333344554443
No 97
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.03 E-value=77 Score=38.04 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=18.4
Q ss_pred hhhhhhHHHHHHHHHhhhhhhhhhhhhhhH
Q 006784 264 ISTGQSKEARLARVCAGLSSRLQEYKSENA 293 (631)
Q Consensus 264 ~~~~~~ke~rL~rv~~qls~rLs~lr~EN~ 293 (631)
|+++--|-..+.|.-.-|++..-+||.|.+
T Consensus 411 va~lEkKvqa~~kERDalr~e~kslk~ela 440 (961)
T KOG4673|consen 411 VATLEKKVQALTKERDALRREQKSLKKELA 440 (961)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666665543
No 98
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=86.96 E-value=5.4 Score=40.38 Aligned_cols=95 Identities=24% Similarity=0.394 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCchHHHHHHHHHHHH
Q 006784 420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQK--KSPEEANQAIQMQAWQ 497 (631)
Q Consensus 420 E~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lk--k~~E~agq~ie~~~~q 497 (631)
|+.|.++|++.=+-|..+++....+ ...-..+..++|-+++ .|-|||..=-|-++ .++.+. .+..++
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~E----qLL~YK~~ql~~~~~~~~~~~~----~l~~v~ 166 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFE----QLLDYKERQLRELEEGRSKSGK----NLKSVR 166 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHH----HHHHHHHHHHHhhhccCCCCCC----CHHHHH
Confidence 5678888888888888787777664 1122233444555443 35677777766664 333333 366788
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 006784 498 DEVERARQGQRDAENKLSSLEAEVQKMR 525 (631)
Q Consensus 498 ~Eve~aR~~qreae~~lss~~aElq~lr 525 (631)
+.|+..++++..++..|..-+.+|+.|+
T Consensus 167 ~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 167 EDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999885
No 99
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=86.93 E-value=26 Score=37.50 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=22.8
Q ss_pred CCCCCcccCCCCCccccCCCCCCCCCc
Q 006784 150 ATPNGEILNENDSDVHLNHPPSPLPPK 176 (631)
Q Consensus 150 ~~~nge~~ne~~sd~~~~~p~~~lp~k 176 (631)
.-+||+|.|+.+.-+.-.-|.|++|.-
T Consensus 26 ~~s~~dl~d~e~d~~~s~~~A~~~~tG 52 (330)
T KOG2991|consen 26 RRSFGDLEDDEDDIFGSTTVAPGVRTG 52 (330)
T ss_pred hhhccCccccccccccCCCCCCCCccc
Confidence 678999999999888888888877753
No 100
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=85.69 E-value=41 Score=34.95 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006784 448 AGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (631)
Q Consensus 448 a~eLeqqv~~lka~~esl~QELqDyk~KA~R~ 479 (631)
...++.++..+++.++.++.++..|+.-...+
T Consensus 116 ~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g 147 (346)
T PRK10476 116 AASANEQVERARANAKLATRTLERLEPLLAKG 147 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 33455667777788888888887777665543
No 101
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.53 E-value=50 Score=34.47 Aligned_cols=97 Identities=26% Similarity=0.358 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhh
Q 006784 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (631)
Q Consensus 306 ~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~ 385 (631)
+..|...+.+++.++...|.+..+.+..| ..+...-++..|...++.+++.....+..|..+......|-....+- .
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e~kl--~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l-~ 130 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAEEKL--SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL-K 130 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 77888888899999999999999998888 44445568899999999999999888888888866655554433332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006784 386 RMIQALREELASVERRAEEE 405 (631)
Q Consensus 386 qalqaLREeLa~AE~rL~~E 405 (631)
..+..++..+.+++.+++.+
T Consensus 131 ~~~~~~e~~~~e~~~~~e~e 150 (239)
T COG1579 131 ERLERLEKNLAEAEARLEEE 150 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 23334444455555544433
No 102
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=85.30 E-value=1.2e+02 Score=38.56 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH
Q 006784 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (631)
Q Consensus 549 RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~r 586 (631)
||+.|---...++-.||..++|-+-|.-.|++.+.-+.
T Consensus 1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555444556777888888888877777776665443
No 103
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.00 E-value=36 Score=32.44 Aligned_cols=54 Identities=26% Similarity=0.371 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (631)
Q Consensus 423 LE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA 476 (631)
++..+.+.-..|+.+++.+++...+..+++..+...+.....++..+.+++.+.
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 132 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERL 132 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344566666777777777777777777777777766666666665555555443
No 104
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=84.99 E-value=75 Score=36.05 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL--TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELE 424 (631)
Q Consensus 347 vLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~--~e~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE 424 (631)
.+..........+.-.......|..+.+++-++-.. ++...+..+.++|...+.++..=...-......+-+ ++
T Consensus 307 ~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~yse----l~ 382 (569)
T PRK04778 307 YVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSE----LQ 382 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH----HH
Confidence 334444444455556666666777777777666442 346667777777777777775322221111111222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCch
Q 006784 425 HRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG-QKKSPE 485 (631)
Q Consensus 425 ~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~-lkk~~E 485 (631)
.++.+...-|..+.....+-+.....|...-..++..+.-++..|...+....+. +++-|+
T Consensus 383 e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~ 444 (569)
T PRK04778 383 EELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPE 444 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcH
Confidence 4444444444444444444444444444444444445555555555444444433 444444
No 105
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=83.82 E-value=43 Score=35.20 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHH----H-----HHHHH
Q 006784 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR-ELTETRMIQALREELASVERRAEEERAA----H-----NATKM 414 (631)
Q Consensus 345 LavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh-~~~e~qalqaLREeLa~AE~rL~~Erea----h-----~atr~ 414 (631)
+..+..++..+.+.+...+.+|...+....-+--+. .......+..|+.+|..++.++..-+.. | ...++
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i 251 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARI 251 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHH
Confidence 344444444444444444555555544332221111 1124566777777777777776554432 2 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006784 415 AAMEREVELEHRAAEASMALAR-IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (631)
Q Consensus 415 aamERE~eLE~q~aEastALa~-aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~l 480 (631)
+. |++++.....-+.. ....+......+.+|+..+..++...+++-+.+...+..+.+..
T Consensus 252 ~~------l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~~ 312 (362)
T TIGR01010 252 KS------LRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADRQQ 312 (362)
T ss_pred HH------HHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22 33332222111111 11234555667889999999999999999999999988887764
No 106
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=83.55 E-value=47 Score=32.57 Aligned_cols=78 Identities=27% Similarity=0.241 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhH-HHHHHHHHHHHHHHhhHhHHHHH
Q 006784 292 NAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE-TLVSSIDALKKQAALSEGNLASL 369 (631)
Q Consensus 292 N~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLa-vLkvrLdeadq~l~~~~~~Leel 369 (631)
...+++-|..-...++.+.+.-+.++.++..+...+.+|+..--.||.+-+-.|| ..-.+.......+......++.+
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~ 110 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQA 110 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666688999999999999999999999999888888888776665 23333444444444444444444
No 107
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=82.91 E-value=60 Score=33.34 Aligned_cols=112 Identities=23% Similarity=0.302 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 006784 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 525 (631)
Q Consensus 446 ~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr 525 (631)
++-.+|+.++.-.+.....++++|..+..+|..- .++. +.++.+...+.+....++
T Consensus 5 r~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~L-----------------eek~-------k~aeeea~~Le~k~~eae 60 (246)
T PF00769_consen 5 REKQELEERLRQMEEEMRRAQEALEESEETAEEL-----------------EEKL-------KQAEEEAEELEQKRQEAE 60 (246)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666777777666665511 0111 112222223555555556
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHH
Q 006784 526 VEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (631)
Q Consensus 526 ~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~ 582 (631)
.++..|+..... +-.+...|+..+++++...-.=....++-..|...++-.|+..-
T Consensus 61 e~~~rL~~~~~~-~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 61 EEKQRLEEEAEM-QEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665532 22345667777777766554333444444555554444444433
No 108
>PRK10698 phage shock protein PspA; Provisional
Probab=82.90 E-value=57 Score=33.04 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhH
Q 006784 292 NAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE 346 (631)
Q Consensus 292 N~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLa 346 (631)
..++++-|..-...++.+.+.-+.++..+......+++|+.----||.+-+-.||
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLA 87 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLA 87 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3444455555567799999999999999999999999998777777776666555
No 109
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=82.62 E-value=39 Score=36.41 Aligned_cols=69 Identities=28% Similarity=0.316 Sum_probs=44.3
Q ss_pred hHHHHhhhHHHhhhhh-------hhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH--HHHH-----HhHHHHHHHHHHH
Q 006784 252 QLDEAQGLLKTTISTG-------QSKEARLARVCAGLSSRLQEYKSENAQLEELLV--AERE-----LSRSYEARIKQLE 317 (631)
Q Consensus 252 ql~e~~~lL~~~~~~~-------~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr--~E~~-----~~~Sl~ar~k~lQ 317 (631)
.|+++|..||++++.+ ..|+..|...|. ..|..-+.+..-|.+.|. .|.- -.++|.+++-.||
T Consensus 171 ~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv---~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ 247 (306)
T PF04849_consen 171 SLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCV---KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQ 247 (306)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHH---HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999988877 477888888773 344555555555555554 1111 1566666666666
Q ss_pred HHHhhh
Q 006784 318 QELSVY 323 (631)
Q Consensus 318 ~ELs~a 323 (631)
..+...
T Consensus 248 ~r~k~~ 253 (306)
T PF04849_consen 248 QRCKQL 253 (306)
T ss_pred HHHHHH
Confidence 666444
No 110
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.41 E-value=99 Score=35.47 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 006784 512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSR 540 (631)
Q Consensus 512 ~~lss~~aElq~lr~E~a~lkrda~~~sr 540 (631)
..+..+..++..++.|+..+.+.+..+..
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~ 419 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPS 419 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45555666777777777777776655433
No 111
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.26 E-value=16 Score=34.29 Aligned_cols=76 Identities=26% Similarity=0.419 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---------hhhHHHHHHHHHHHHHHHHHHHHHH
Q 006784 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS---------REEHMELEKRYRELTDLLYYKQTQL 564 (631)
Q Consensus 494 ~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~s---------rq~~~ELE~RlrELTdlLy~KQTqL 564 (631)
..++..+.+-......+...+.++.+++..++.||-.+....+... +..+.+|+.||.-+-+||=.|=-.+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~v 98 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEV 98 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3444444444444444555555666666666666665555554432 2467888888888888887776666
Q ss_pred HHhhh
Q 006784 565 ETMAS 569 (631)
Q Consensus 565 EaLat 569 (631)
|.|=.
T Consensus 99 eEL~~ 103 (120)
T PF12325_consen 99 EELRA 103 (120)
T ss_pred HHHHH
Confidence 66543
No 112
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=81.51 E-value=43 Score=37.92 Aligned_cols=72 Identities=31% Similarity=0.348 Sum_probs=44.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 006784 483 SPEEANQAIQMQAWQDEVERARQG----QRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLY 558 (631)
Q Consensus 483 ~~E~agq~ie~~~~q~Eve~aR~~----qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy 558 (631)
+.+.++-.++++.|+.||++.|-. |.....++.+|++|-..+|.|.+. .+|.-..+||+| ..|.-+|-
T Consensus 245 gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~r-------lQrkL~~e~erR-ealcr~ls 316 (552)
T KOG2129|consen 245 GDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENER-------LQRKLINELERR-EALCRMLS 316 (552)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHH-HHHHHHhh
Confidence 555566777889999999987654 444444555555555555555444 455556788887 23444444
Q ss_pred HHHH
Q 006784 559 YKQT 562 (631)
Q Consensus 559 ~KQT 562 (631)
.+-.
T Consensus 317 Eses 320 (552)
T KOG2129|consen 317 ESES 320 (552)
T ss_pred hhhH
Confidence 4433
No 113
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=81.31 E-value=1e+02 Score=35.98 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 448 AGELEQKVAMLEVECATLQQELQDMEARL 476 (631)
Q Consensus 448 a~eLeqqv~~lka~~esl~QELqDyk~KA 476 (631)
..-|++++..++.+++.+.+.|.+|+.+.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566677777777777778888888765
No 114
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.84 E-value=26 Score=37.09 Aligned_cols=77 Identities=17% Similarity=0.326 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006784 457 MLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (631)
Q Consensus 457 ~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~ 536 (631)
.++..++.+..|...|..-..+.... ..-.-....++.++.........+..++..++.+...+..|+..+.....
T Consensus 13 ~l~~~~~~~~~E~~~Y~~fL~~l~~~----~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 13 QLDKQLEQAEKERDTYQEFLKKLEEE----SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp ---------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666655544421 11111223344455555555555666666666666666666666665554
Q ss_pred h
Q 006784 537 H 537 (631)
Q Consensus 537 ~ 537 (631)
.
T Consensus 89 ~ 89 (314)
T PF04111_consen 89 E 89 (314)
T ss_dssp H
T ss_pred H
Confidence 3
No 115
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=80.75 E-value=1e+02 Score=37.36 Aligned_cols=45 Identities=31% Similarity=0.389 Sum_probs=33.6
Q ss_pred HhhhhHHHHhhhhhcccCCCC----CCCCCCCcchhhhhchHHHhhhhh
Q 006784 15 VDRRAKLVVNELADEQSDFQT----PASNGQGSQAKKIKSRIKAQRRHS 59 (631)
Q Consensus 15 vDRrAK~V~~eLsdEq~d~q~----paSngqgsQ~Kk~ksk~ka~~~ls 59 (631)
.||=|-|.-.=|--|.+.+-+ +-+|+..=.+|+-.+||||.+++.
T Consensus 12 LDrCAsLL~dILrnE~sGsE~~yse~r~nsrplegK~~~~KKKG~~Kht 60 (861)
T PF15254_consen 12 LDRCASLLRDILRNEDSGSETVYSENRSNSRPLEGKRNGSKKKGPEKHT 60 (861)
T ss_pred hHHHHHHHHHhhhcccCCCcccccccccCCCcCCcccccccCCCCcccc
Confidence 577788877777777773322 247777778888889999999983
No 116
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=80.17 E-value=59 Score=33.42 Aligned_cols=105 Identities=26% Similarity=0.372 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCCchHHHHHH--HHHHH
Q 006784 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ---KKSPEEANQAI--QMQAW 496 (631)
Q Consensus 422 eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~l---kk~~E~agq~i--e~~~~ 496 (631)
+||.++-.+=.-+.+++..+.+...++..|+.+++.++.+...|.+.-.+++.-..|.. ....++- ..+ ++...
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk-~~Le~e~~e~ 87 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEK-EQLEQELREA 87 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 35555555545555677777777788888888888877777776666555444444432 2121211 112 33334
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006784 497 QDEVERARQGQRDAENKLSSLEAEVQKMRVE 527 (631)
Q Consensus 497 q~Eve~aR~~qreae~~lss~~aElq~lr~E 527 (631)
+.+|.........-+.....+++++..++..
T Consensus 88 ~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 88 EAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455555555555543
No 117
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.95 E-value=55 Score=31.24 Aligned_cols=20 Identities=35% Similarity=0.363 Sum_probs=7.4
Q ss_pred HHHHHhhhhhhhhhhhhhhH
Q 006784 274 LARVCAGLSSRLQEYKSENA 293 (631)
Q Consensus 274 L~rv~~qls~rLs~lr~EN~ 293 (631)
+.+...++..++..+..+..
T Consensus 93 l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 93 LQEELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 118
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=79.75 E-value=71 Score=32.09 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHH
Q 006784 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVER 502 (631)
Q Consensus 423 LE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~ 502 (631)
||.++......|...+..+.+...+...++.....+-..+..+++.+++....-.-..+.+.. .-.......|+-|+..
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~-~l~~a~~~~l~ae~~~ 161 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGES-PLSEAQRWLLQAELAA 161 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc-hhhHHHHHHHHHHHHH
Confidence 778888888888888888888888888888888888888888888888877765543332211 1111122222222222
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006784 503 ARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ 561 (631)
Q Consensus 503 aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQ 561 (631)
+.++..+-.....-...+.++..+++|.. ..-...|+.++..|-+.|..|-
T Consensus 162 -----l~~~~~~le~el~s~~~rq~L~~~qrdl~---~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 162 -----LEAQIEMLEQELLSNNNRQELLQLQRDLL---KARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred -----HHHHHHHHHHHHHCcHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111112233455666677663 4556778888888888877764
No 119
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=79.21 E-value=63 Score=35.24 Aligned_cols=87 Identities=18% Similarity=0.265 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006784 385 TRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECAT 464 (631)
Q Consensus 385 ~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~es 464 (631)
|.=+.-|..+++.+..+|..-++.++.+--.-.+ +-+++++-+.-|-......+++-.+.++- .-|...|..+..
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~----~t~~L~~IseeLe~vK~emeerg~~mtD~-sPlv~IKqAl~k 339 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSE----RTRELAEISEELEQVKQEMEERGSSMTDG-SPLVKIKQALTK 339 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHH
Confidence 4445555566777777777666666555444444 56667777777777888888877777776 445567888888
Q ss_pred HHHHHHHHHHHH
Q 006784 465 LQQELQDMEARL 476 (631)
Q Consensus 465 l~QELqDyk~KA 476 (631)
|++|+..|..+.
T Consensus 340 Lk~EI~qMdvrI 351 (359)
T PF10498_consen 340 LKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHhhhhh
Confidence 999999888764
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.17 E-value=95 Score=33.24 Aligned_cols=121 Identities=20% Similarity=0.263 Sum_probs=66.5
Q ss_pred HHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhh-hHHHHHhcccchhHHHHHHH
Q 006784 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES-NLAEALAAKNSEIETLVSSI 352 (631)
Q Consensus 274 L~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~Es-dlteAlaAKdSqLavLkvrL 352 (631)
+.-...+|-..+..++.+...|..-+..-....-.+..+...|+.|+...+..++-.++ | ..+|..++.+|
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d--------~~eL~~lk~~l 213 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD--------PTELDRAKEKL 213 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC--------HHHHHHHHHHH
Confidence 44555556666666677766555544455555666777777777777777666665532 2 12233333344
Q ss_pred HHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 006784 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (631)
Q Consensus 353 deadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~ 403 (631)
.+.+..+......+++++.+...+-..-..+. .-++.+++++++|++.++
T Consensus 214 ~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~-~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 214 KKLLQEIMIKVKKLEELEEELQELESKIEDLT-NKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433333332 234567778888887653
No 121
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=78.86 E-value=1.2e+02 Score=34.21 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006784 384 ETRMIQALREELASVERRAEEERAAH--NATKMA----------AMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451 (631)
Q Consensus 384 e~qalqaLREeLa~AE~rL~~Ereah--~atr~a----------amERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eL 451 (631)
...+|.-.++++..||.++..=|.+= |..+.- -+.-=..||.++++.-+-|+.+.+.+.+..-++
T Consensus 240 r~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV--- 316 (434)
T PRK15178 240 QKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLI--- 316 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---
Confidence 45667777788888888887766662 222221 122223455555555555555544444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHH
Q 006784 452 EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERA 503 (631)
Q Consensus 452 eqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~a 503 (631)
..++...+.|.+++...+.+.+.+-+ ++..+....+.+.|.-+.+-|
T Consensus 317 ----~~l~~rI~aLe~QIa~er~kl~~~~g-~~~la~~laeYe~L~le~efA 363 (434)
T PRK15178 317 ----PRLSAKIKVLEKQIGEQRNRLSNKLG-SQGSSESLSLFEDLRLQSEIA 363 (434)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHhhcCCC-CCchhHHHHHHHHHHHHHHHH
Confidence 44555555566666665555543221 112233444666665555553
No 122
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.11 E-value=32 Score=32.04 Aligned_cols=97 Identities=25% Similarity=0.312 Sum_probs=53.2
Q ss_pred hhhHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 006784 250 QDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTK 329 (631)
Q Consensus 250 q~ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k 329 (631)
...|......|.+.+..++....+|..-++.+...+.. ++.=.++-.....++...++.+.+|+.+.+..+..
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~-------~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELAS-------AEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555544444444444443333333333 22223333333556666777777777777666666
Q ss_pred hhhhHHHHHhcccchhHHHHHHHH
Q 006784 330 VESNLAEALAAKNSEIETLVSSID 353 (631)
Q Consensus 330 ~EsdlteAlaAKdSqLavLkvrLd 353 (631)
......--+--|+-++..|+.+|.
T Consensus 127 ~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 127 RKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666666667777777777663
No 123
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=77.97 E-value=69 Score=30.98 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=25.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (631)
Q Consensus 439 R~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA 476 (631)
-.+.+-+++.+-|+.+|.+++..++....++..+.-.|
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~da 47 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDA 47 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34555566777777777777777777776666554433
No 124
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.70 E-value=60 Score=30.10 Aligned_cols=11 Identities=45% Similarity=0.694 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 006784 544 MELEKRYRELT 554 (631)
Q Consensus 544 ~ELE~RlrELT 554 (631)
.+++.|+.+|.
T Consensus 108 ~~~~~r~~dL~ 118 (132)
T PF07926_consen 108 SELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHH
Confidence 44444544444
No 125
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.01 E-value=17 Score=36.60 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=35.6
Q ss_pred chhhhHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Q 006784 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVA 301 (631)
Q Consensus 248 k~q~ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~ 301 (631)
+++.+|.+.+.-|.+.-.+.++..+.+...+++.....++|+.+|++|.+-|..
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666556666677777777777777777777777766555543
No 126
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=76.45 E-value=76 Score=34.66 Aligned_cols=128 Identities=13% Similarity=0.228 Sum_probs=90.2
Q ss_pred HHHHHHHhhhhhh----hhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh-------hhHHHHHhc
Q 006784 272 ARLARVCAGLSSR----LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE-------SNLAEALAA 340 (631)
Q Consensus 272 ~rL~rv~~qls~r----Ls~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~E-------sdlteAlaA 340 (631)
..+-||.-+|+-. -..||.-.+|.-.+..+=...+..+...++.++.++++.--++.+.| ..|..-...
T Consensus 198 lEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~ 277 (359)
T PF10498_consen 198 LEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRS 277 (359)
T ss_pred HHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4566676666432 24788888887777777777788999999999999999999999888 344444566
Q ss_pred ccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhh------------hhHHHHHHHHHHHHHH
Q 006784 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT------------ETRMIQALREELASVE 399 (631)
Q Consensus 341 KdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~------------e~qalqaLREeLa~AE 399 (631)
...+|..+..+|.++..-+..++..|..+-.+.+.+.++-.+. --+||..|+.++.+=+
T Consensus 278 ~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 278 AQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 6667777777777777777777777777666666654443331 2577777777776544
No 127
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=76.39 E-value=67 Score=34.74 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh---hh---hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006784 517 LEAEVQKMRVEMAAMKRDAEHY---SR---EEHMELEKRYRELTDLLYYKQTQLETM 567 (631)
Q Consensus 517 ~~aElq~lr~E~a~lkrda~~~---sr---q~~~ELE~RlrELTdlLy~KQTqLEaL 567 (631)
+++.++.+-.|.+.|.+.+.-+ ++ .+..+|+.||-++..||..=|.+|-.|
T Consensus 246 lQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 246 LQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444445555555544332 11 245788899999999998888877654
No 128
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.38 E-value=19 Score=36.42 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=19.4
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhh
Q 006784 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (631)
Q Consensus 342 dSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RIm 377 (631)
+.++..|+.+.+.+.+++......+..|+.+++.+-
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555544443
No 129
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=75.34 E-value=1.9e+02 Score=34.69 Aligned_cols=144 Identities=22% Similarity=0.322 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHH
Q 006784 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVER 502 (631)
Q Consensus 423 LE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~ 502 (631)
|+.++--+=..|.+.+-..+-=.....++-.....++.+...|+-|+.+||.+=.|.+---++=-- +-=.||.+|..
T Consensus 39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEe---ENislQKqvs~ 115 (717)
T PF09730_consen 39 LENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEE---ENISLQKQVSV 115 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHH
Confidence 334433333444444444444445556666677778888899999999999999988752222111 11237778999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHH
Q 006784 503 ARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (631)
Q Consensus 503 aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~ 582 (631)
.|+.|-++|. +..++..|+.|+..|+.+++.. .|||++++.=. ---||+|-+|. -+-+.|.|++
T Consensus 116 Lk~sQvefE~----~Khei~rl~Ee~~~l~~qlee~---------~rLk~iae~ql--eEALesl~~ER-eqk~~LrkEL 179 (717)
T PF09730_consen 116 LKQSQVEFEG----LKHEIKRLEEEIELLNSQLEEA---------ARLKEIAEKQL--EEALESLKSER-EQKNALRKEL 179 (717)
T ss_pred HHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHH
Confidence 9999988875 8999999999988888887653 35555544200 01234444443 2344555665
Q ss_pred HHH
Q 006784 583 NRL 585 (631)
Q Consensus 583 ~q~ 585 (631)
-++
T Consensus 180 ~~~ 182 (717)
T PF09730_consen 180 DQH 182 (717)
T ss_pred HHh
Confidence 443
No 130
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=75.22 E-value=91 Score=30.98 Aligned_cols=75 Identities=15% Similarity=0.260 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006784 497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572 (631)
Q Consensus 497 q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKa 572 (631)
+..+...+.........+...+..+..++..+...+..+.. .........+.+.++-+.+......+..+...-+
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 143 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSA-SQDLVESRQEQLEELQNELEERKQRLSQLQSQLA 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333434444444444444444444444444444444431 1112223333344444444444444444443333
No 131
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=75.00 E-value=1.3e+02 Score=32.69 Aligned_cols=188 Identities=18% Similarity=0.256 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhc-ccchhH
Q 006784 268 QSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAA-KNSEIE 346 (631)
Q Consensus 268 ~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaA-KdSqLa 346 (631)
+-.+..|++++.|-+..|.-|+.||.-|=--|-+|.+....|+..+....--|+.| =.|.-.-.++ .|-+++
T Consensus 48 KLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaA-------i~d~dqsq~skrdlela 120 (305)
T PF14915_consen 48 KLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAA-------IQDHDQSQTSKRDLELA 120 (305)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHhhHHHHHHH
Confidence 55667788999999999999999999333333366666666666655554444444 2222222333 233333
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-----HH----HHHHHHHHH
Q 006784 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEER-----AA----HNATKMAAM 417 (631)
Q Consensus 347 vLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Er-----ea----h~atr~aam 417 (631)
+..-.|+|-..=.-+...+..|...+.-|.+.-+.+++. +-+|.-+||.+--+|++=. .. +..+++-.|
T Consensus 121 -fqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK-~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~ 198 (305)
T PF14915_consen 121 -FQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESK-FNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEI 198 (305)
T ss_pred -HHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555555555555555555555555544444322 2334444444433332111 00 133333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006784 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (631)
Q Consensus 418 ERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~ 477 (631)
+....-|. .++..-..|-.-++..+.-+..+--.|+|.|-|.-.||-
T Consensus 199 e~m~qne~-------------~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 199 EHMYQNEQ-------------DKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHhHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222 233333334444555555566666667777777666653
No 132
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=74.99 E-value=2e+02 Score=34.67 Aligned_cols=130 Identities=17% Similarity=0.264 Sum_probs=65.6
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhh-----------Hhh--------------hhhhhhhhHHHHHHHHHHH
Q 006784 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNME-----------SIM--------------RNRELTETRMIQALREELA 396 (631)
Q Consensus 342 dSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~-----------RIm--------------qdh~~~e~qalqaLREeLa 396 (631)
.+.++-|-||++...--|...++.|..-....+ .+| +-.....+..+.-|+...+
T Consensus 262 ~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVA 341 (739)
T PF07111_consen 262 QATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVA 341 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHH
Confidence 445666777777766666666665543221111 111 1111123555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 397 SVERRAEEERAAHNATKMAAMEREVELEHRAAE---ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471 (631)
Q Consensus 397 ~AE~rL~~Ereah~atr~aamERE~eLE~q~aE---astALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqD 471 (631)
+-+..+..+..-+.....+--.|+++++=+... ...=|.+++....-.+.++.-.+.+++.+...+-|.++-|.-
T Consensus 342 sLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s 419 (739)
T PF07111_consen 342 SLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLES 419 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444433333333333444444444222 244456666666666666666666666665556655554443
No 133
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=74.96 E-value=1.1e+02 Score=31.68 Aligned_cols=83 Identities=23% Similarity=0.261 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006784 388 IQALREELASVERRAE-EERAAHNATKMAAMEREVELEHR--AAEASMALARIQRIADERTAKAGELEQKVAMLEVECAT 464 (631)
Q Consensus 388 lqaLREeLa~AE~rL~-~Ereah~atr~aamERE~eLE~q--~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~es 464 (631)
|.++...|.+|.+..+ ..|++...+|-=.|. |++||+- .+++..+ -=+.+.++.+-. .+.++++.+.-+-
T Consensus 62 ~e~~e~qLkEAk~iaE~adrK~eEVarkL~ii-E~dLE~~eeraE~~Es---~~~eLeEe~~~~---~~nlk~l~~~ee~ 134 (205)
T KOG1003|consen 62 MEAQEAQLKEAKHIAEKADRKYEEVARKLVII-EGELERAEERAEAAES---QSEELEEDLRIL---DSNLKSLSAKEEK 134 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH---HHHHHHHHHHHh---HhHHHHHHHHHHH
Confidence 3444555555544332 122332333333332 4666654 5555444 223333333322 4555556666666
Q ss_pred HHHHHHHHHHHHh
Q 006784 465 LQQELQDMEARLK 477 (631)
Q Consensus 465 l~QELqDyk~KA~ 477 (631)
+-|.+-.|+..-.
T Consensus 135 ~~q~~d~~e~~ik 147 (205)
T KOG1003|consen 135 LEQKEEKYEEELK 147 (205)
T ss_pred HhhhHHHHHHHHH
Confidence 6666666665543
No 134
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=74.60 E-value=0.98 Score=51.75 Aligned_cols=61 Identities=11% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhh
Q 006784 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (631)
Q Consensus 307 ~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqd 379 (631)
.....++..|++||-..|++.+++ .-..+.++..|.+|+++ ...+..+.+|+..+.-+|+.
T Consensus 287 ~~~A~~a~~LrDElD~lR~~a~r~--------~klE~~ve~YKkKLed~----~~lk~qvk~Lee~N~~l~e~ 347 (713)
T PF05622_consen 287 QAEAREARALRDELDELREKADRA--------DKLENEVEKYKKKLEDL----EDLKRQVKELEEDNAVLLET 347 (713)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 333344444444544444444443 22234455555555543 23344445555545444444
No 135
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=74.45 E-value=50 Score=35.31 Aligned_cols=45 Identities=22% Similarity=0.146 Sum_probs=33.0
Q ss_pred hhhHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHH
Q 006784 250 QDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQ 294 (631)
Q Consensus 250 q~ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~Q 294 (631)
-..|++.-..|++....+..++..+..+...++.+...|+.|..+
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~ 190 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQ 190 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777777777778888888888888877773
No 136
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=72.77 E-value=1.2e+02 Score=31.05 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006784 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (631)
Q Consensus 449 ~eLeqqv~~lka~~esl~QELqDyk~KA~R~l 480 (631)
..++.++..+++.+..++.++..|+.-...+.
T Consensus 111 ~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~ 142 (334)
T TIGR00998 111 ESLKIKLEQAREKLLQAELDLRRRVPLFKKGL 142 (334)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCC
Confidence 34444555666666666667776665555443
No 137
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=72.14 E-value=1.2e+02 Score=32.38 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 006784 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKS 483 (631)
Q Consensus 427 ~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~ 483 (631)
+...-.-|..++..+.+-+.|+.++-.++.-++-.-.-+...+..++.|+.+-++++
T Consensus 209 Le~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~s 265 (269)
T PF05278_consen 209 LEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKS 265 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 555566677789999999999999999999999999999999999999998876654
No 138
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=70.20 E-value=2.1e+02 Score=32.95 Aligned_cols=43 Identities=12% Similarity=0.285 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006784 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (631)
Q Consensus 494 ~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~ 536 (631)
..++.++..+......++..+..+..++..++.++..+++.+.
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445544444455555555555555555555555555554
No 139
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=70.13 E-value=2e+02 Score=32.62 Aligned_cols=114 Identities=24% Similarity=0.307 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HH
Q 006784 384 ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM----LE 459 (631)
Q Consensus 384 e~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~----lk 459 (631)
++.+++++-++|.+.-.....=.++... |+-++.-- +.-+--.++|++-|+.-||.++-- .-
T Consensus 258 ~~~~l~aileeL~eIk~~q~~Leesye~-----------Lke~~krd---y~fi~etLQEERyR~erLEEqLNdlteLqQ 323 (455)
T KOG3850|consen 258 QGAALDAILEELREIKETQALLEESYER-----------LKEQIKRD---YKFIAETLQEERYRYERLEEQLNDLTELQQ 323 (455)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4667999999998876554333333222 22221111 111334578999999999988754 57
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006784 460 VECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (631)
Q Consensus 460 a~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~ 536 (631)
.+...|+|||.-|+.|.. -|+ -+++|-= +.++.+|+..+-+| |+..+.+|+.
T Consensus 324 nEi~nLKqElasmeerva----------YQs---------yERaRdI----qEalEscqtrisKl--El~qq~qqv~ 375 (455)
T KOG3850|consen 324 NEIANLKQELASMEERVA----------YQS---------YERARDI----QEALESCQTRISKL--ELQQQQQQVV 375 (455)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHH---------HHHHHHH----HHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 789999999999998875 111 2455443 44455566666665 5666666664
No 140
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=69.44 E-value=71 Score=29.65 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHh
Q 006784 292 NAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371 (631)
Q Consensus 292 N~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~ 371 (631)
+.+|.+||.++.-. ..|....-.++. +...+..+-..=-+|++.+-++..+|..++..+.+.-..+.........++.
T Consensus 6 ~~eL~~Ll~d~~~l-~~~v~~l~~~~~-~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~ 83 (150)
T PF07200_consen 6 TEELQELLSDEEKL-DAFVKSLPQVQE-LQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQ 83 (150)
T ss_dssp THHHHHHHHH-HHH-HHHGGGGS--HH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHH-HHHHHcCHHHHH-HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888877443 224333222111 2222222222225566777777788899998888888888888888888877
Q ss_pred hhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006784 372 NMESIMRNRELTETRMIQALREELASVERRAEEE 405 (631)
Q Consensus 372 e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~E 405 (631)
....++...+. ++|..+|..+=..+..|
T Consensus 84 ~~~~l~~~~s~------~~l~~~L~~~~~e~eee 111 (150)
T PF07200_consen 84 QQDELSSNYSP------DALLARLQAAASEAEEE 111 (150)
T ss_dssp HHHHHHHCHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCH------HHHHHHHHHHHHHHHHH
Confidence 77777555543 34444454444444333
No 141
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=69.37 E-value=1.8e+02 Score=31.83 Aligned_cols=164 Identities=15% Similarity=0.099 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHH
Q 006784 310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQ 389 (631)
Q Consensus 310 ~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalq 389 (631)
++....+...|..++.+....+..+.-+...+..-......+.......+.....+...++.....+..+-...+-+ +.
T Consensus 238 ~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~-~~ 316 (458)
T COG3206 238 EQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQ-LV 316 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChH-HH
Confidence 34455566666666666666665555555444444432222222222233333333333333333333333333333 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006784 390 ALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (631)
Q Consensus 390 aLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QEL 469 (631)
+++.++.+.+..+..|-..-..+......+=...+..++.....|...-..+-....++.+|+.++...+.-.+++=+..
T Consensus 317 ~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~ 396 (458)
T COG3206 317 ALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRY 396 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666665554432222222222111122223444444444455556666777777777777777776665555
Q ss_pred HHHHH
Q 006784 470 QDMEA 474 (631)
Q Consensus 470 qDyk~ 474 (631)
++...
T Consensus 397 qe~~~ 401 (458)
T COG3206 397 QELSI 401 (458)
T ss_pred HHHHH
Confidence 55443
No 142
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=69.36 E-value=2.1e+02 Score=32.65 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----------------hHHHHHHHHHHHHHHHHHH
Q 006784 509 DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSRE-----------------EHMELEKRYRELTDLLYYK 560 (631)
Q Consensus 509 eae~~lss~~aElq~lr~E~a~lkrda~~~srq-----------------~~~ELE~RlrELTdlLy~K 560 (631)
--+++|.=+.+|++.|++|+..+-+|-+|.|-. +-..|-.+|+.-|+-|-.|
T Consensus 516 VKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAteALgEK 584 (593)
T KOG4807|consen 516 VKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEALGEK 584 (593)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHhccc
Confidence 346678889999999999999999999887642 2345556666666655444
No 143
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.29 E-value=2.1e+02 Score=32.65 Aligned_cols=134 Identities=17% Similarity=0.267 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELT--ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAA 428 (631)
Q Consensus 351 rLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~--e~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~a 428 (631)
.+......+.-.......|..+.+|+-+.-... +..-+..+..+|..-+.+...=...=..-...+-. +...+.
T Consensus 307 ~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~----i~~~l~ 382 (560)
T PF06160_consen 307 NLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSE----IQEELE 382 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHH----HHHHHH
Confidence 334444444445555556666666666665554 44555666677766666654433332222333333 555666
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCchHHH
Q 006784 429 EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG-QKKSPEEAN 488 (631)
Q Consensus 429 EastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~-lkk~~E~ag 488 (631)
+....|..++....+=......|...-..++..+.-+++.|..++-+..+- ++|=|++--
T Consensus 383 ~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~ 443 (560)
T PF06160_consen 383 EIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYL 443 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 777777778888887788888888888888889999999999988887665 777666544
No 144
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=69.09 E-value=2.1e+02 Score=32.43 Aligned_cols=127 Identities=18% Similarity=0.132 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 006784 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM 528 (631)
Q Consensus 449 ~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~ 528 (631)
.-++.+|..++..+..+++.|.+|-++..-+ .|+..++.+ -.-+..++.++-.++.++
T Consensus 245 ~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvl---DP~~~a~~~-------------------~~lI~~Le~qLa~~~aeL 302 (434)
T PRK15178 245 LWLENDVKSAQENLGAARLELLKIQHIQKDI---DPKETITAI-------------------YQLIAGFETQLAEAKAEY 302 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---ChHHHHHHH-------------------HHHHHHHHHHHHHHHHHH
Confidence 3456677777788888888888887665433 223222111 112333444555555555
Q ss_pred HHHHHhhhhh-hh-----hhHHHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 006784 529 AAMKRDAEHY-SR-----EEHMELEKRYRELTDLLYYKQ--TQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRV 597 (631)
Q Consensus 529 a~lkrda~~~-sr-----q~~~ELE~RlrELTdlLy~KQ--TqLEaLatEKaAlqlQLER~~~q~reaQ~e~ersr~ 597 (631)
+.|+..+.-. ++ ....-||+++.....-|--.- .-+-.+.+|+..+.+..+=..+.|..|.+..|.+|+
T Consensus 303 ~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~ 379 (434)
T PRK15178 303 AQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKL 379 (434)
T ss_pred HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554432211 11 122344444444333332110 023445667777777777677777776666666554
No 145
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=68.92 E-value=1.7e+02 Score=31.54 Aligned_cols=149 Identities=22% Similarity=0.263 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhh
Q 006784 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (631)
Q Consensus 306 ~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~ 385 (631)
.-.|.++..++++||+.-+..-...|..| ++||..|+.|+--+.-...-++-.++. .++++=-.|..+ -
T Consensus 22 ~~~ykq~f~~~reEl~EFQegSrE~Eael-------esqL~q~etrnrdl~t~nqrl~~E~e~---~Kek~e~q~~q~-y 90 (333)
T KOG1853|consen 22 HHEYKQHFLQMREELNEFQEGSREIEAEL-------ESQLDQLETRNRDLETRNQRLTTEQER---NKEKQEDQRVQF-Y 90 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-H
Confidence 44688999999999988766655556555 455555555543332222222222222 233322122111 2
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006784 386 RMIQALREELASVERRAEE--------ERAA------HNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451 (631)
Q Consensus 386 qalqaLREeLa~AE~rL~~--------Erea------h~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eL 451 (631)
+.+..|+..|+..-+--+. ||.+ +.++=+..- ++|.++--++.--+.++-.++|..- |
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sle----DfeqrLnqAIErnAfLESELdEke~----l 162 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLE----DFEQRLNQAIERNAFLESELDEKEV----L 162 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHhhHHHH----H
Confidence 3333344444333221111 1111 233333333 3666666666666666666666542 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006784 452 EQKVAMLEVECATLQQELQDME 473 (631)
Q Consensus 452 eqqv~~lka~~esl~QELqDyk 473 (631)
=.-|.-+|-++-.|+|||+--.
T Consensus 163 lesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 163 LESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2334557777778888887643
No 146
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=68.92 E-value=2.4e+02 Score=33.04 Aligned_cols=92 Identities=14% Similarity=0.230 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 006784 432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAE 511 (631)
Q Consensus 432 tALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae 511 (631)
..+..++..++....|..+|.++-..++.-+..--+.|. .+.. +...+...+-.+|...|+..++.+
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk---~~~~----------~~~~e~~~~~~~ik~~r~~~k~~~ 460 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLK---EKAS----------NRESESKQKLQEIKELREEIKEIE 460 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHh----------hcchHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666677777777776666654433333322 2221 111222334456777777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 006784 512 NKLSSLEAEVQKMRVEMAAMKRDAE 536 (631)
Q Consensus 512 ~~lss~~aElq~lr~E~a~lkrda~ 536 (631)
.++..-......|..|++.|-.++.
T Consensus 461 ~e~~~Kee~~~qL~~e~e~~~k~~~ 485 (594)
T PF05667_consen 461 EEIRQKEELYKQLVKELEKLPKDVN 485 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 8888878888888888777777764
No 147
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=67.95 E-value=2.3e+02 Score=32.50 Aligned_cols=84 Identities=20% Similarity=0.274 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006784 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467 (631)
Q Consensus 388 lqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~Q 467 (631)
+..++.++++.+.+++.+|.++.. +.+.++ +.+.++..--.. .+.+++++..++..+ +.-..+..-+.=++.
T Consensus 76 ~~~~~~~~~~l~~~le~~~~~~~e-k~~~l~---~~~~~L~~~F~~--LA~~ile~k~~~f~~--~~~~~l~~ll~Pl~e 147 (475)
T PRK10361 76 NTSLEADLREVTTRMEAAQQHADD-KIRQMI---NSEQRLSEQFEN--LANRIFEHSNRRVDE--QNRQSLNSLLSPLRE 147 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHhhHHH
Confidence 456677777788888777776633 222222 133333333333 256788888877773 444556777777888
Q ss_pred HHHHHHHHHhcc
Q 006784 468 ELQDMEARLKRG 479 (631)
Q Consensus 468 ELqDyk~KA~R~ 479 (631)
.|..|+.+....
T Consensus 148 ~l~~f~~~v~~~ 159 (475)
T PRK10361 148 QLDGFRRQVQDS 159 (475)
T ss_pred HHHHHHHHHHHH
Confidence 888888877733
No 148
>PF15294 Leu_zip: Leucine zipper
Probab=66.81 E-value=77 Score=33.90 Aligned_cols=104 Identities=27% Similarity=0.360 Sum_probs=63.2
Q ss_pred hhhHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhh-------------hhHH---HHHHHH---HHHHH-hHHH
Q 006784 250 QDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKS-------------ENAQ---LEELLV---AEREL-SRSY 309 (631)
Q Consensus 250 q~ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~-------------EN~Q---LEeLLr---~E~~~-~~Sl 309 (631)
-+-|.++|.-||+-+.+|+....-..+.=.-+.+.|..++. ..++ ||.=+. .+.+. +...
T Consensus 134 i~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~ 213 (278)
T PF15294_consen 134 IDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDK 213 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 34677788888887777755544444444444444444443 1111 222222 22222 4455
Q ss_pred HHHHHHHHHHHhhhhhhhhhh-h-------------------hhHHHHHhcccchhHHHHHHHH
Q 006784 310 EARIKQLEQELSVYKSEVTKV-E-------------------SNLAEALAAKNSEIETLVSSID 353 (631)
Q Consensus 310 ~ar~k~lQ~ELs~ar~~v~k~-E-------------------sdlteAlaAKdSqLavLkvrLd 353 (631)
....+.|++.|-.+++.+-++ + .+|-+.|+.||-||..|+.||.
T Consensus 214 ~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 214 ESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHhc
Confidence 556777777777777776666 1 8899999999999999998874
No 149
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=66.10 E-value=2.1e+02 Score=31.38 Aligned_cols=29 Identities=10% Similarity=0.327 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006784 450 ELEQKVAMLEVECATLQQELQDMEARLKR 478 (631)
Q Consensus 450 eLeqqv~~lka~~esl~QELqDyk~KA~R 478 (631)
+..+++..+++++..++.+|..++....+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444555555555555544444433
No 150
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=65.89 E-value=37 Score=29.39 Aligned_cols=59 Identities=27% Similarity=0.301 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006784 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (631)
Q Consensus 422 eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~l 480 (631)
+||.++..++...+.++..+.+-+.+...|...-..++.+.+-|+++......+....+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999999999988888888888888888777666655433
No 151
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.81 E-value=2.6e+02 Score=32.33 Aligned_cols=136 Identities=17% Similarity=0.224 Sum_probs=79.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHH--HHHHHHH-hhhhhHHHHHHHHH
Q 006784 442 DERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQ--DEVERAR-QGQRDAENKLSSLE 518 (631)
Q Consensus 442 ~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q--~Eve~aR-~~qreae~~lss~~ 518 (631)
++-..-...|+.+++...+....|.|...||++-.--- -++|.... .|++.-| ...++++..+.+..
T Consensus 289 ~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~k----------kl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~ 358 (521)
T KOG1937|consen 289 DDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQK----------KLQLREELKNLETEDEEIRRIQELEQDLEAVD 358 (521)
T ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 34456667788888888888888888888876543211 00100000 0111111 23334444444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHH
Q 006784 519 AEVQKMRVEMAAMKRDAEHYSR-EEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (631)
Q Consensus 519 aElq~lr~E~a~lkrda~~~sr-q~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~re 587 (631)
.+.++-+.+-..|+..+....+ ...-.+..|.+|++-+.----+-+=.+..|--.||.|++++..+++-
T Consensus 359 eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 359 EEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444433334444444443333 24677899999999885433356888999999999998888766653
No 152
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=64.84 E-value=3e+02 Score=32.72 Aligned_cols=51 Identities=16% Similarity=0.362 Sum_probs=35.7
Q ss_pred hhHHHhhhHHHHHhhhhHHHHhhhhhcccCCCCCCCCCCCcchhhhhchHHHhhhhhccccc
Q 006784 3 SWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESL 64 (631)
Q Consensus 3 ~~~~~~~~~~~~vDRrAK~V~~eLsdEq~d~q~paSngqgsQ~Kk~ksk~ka~~~ls~~E~~ 64 (631)
.|... =|+-.+|+.-.+|++|++.|.++.-. .|+-..+.+..++.++.++.
T Consensus 11 ~Wk~~---dle~LQreLd~~~~~l~~~Q~~S~~s--------rk~L~e~trefkk~~pe~k~ 61 (629)
T KOG0963|consen 11 YWKRF---DLERLQRELDAEATEIAQRQDESEIS--------RKRLAEETREFKKNTPEDKL 61 (629)
T ss_pred HHHhc---cHHHHHHHHHHHHHHHHhhhhhHHHH--------HHHHHHhHHHHhccCcHHHH
Confidence 46543 26778999999999999999887532 34445666777776666444
No 153
>PRK11519 tyrosine kinase; Provisional
Probab=64.83 E-value=2.8e+02 Score=32.45 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHh
Q 006784 448 AGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQ 505 (631)
Q Consensus 448 a~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~ 505 (631)
+.+=+-.|..++.+..+|++++..++.+....- ....++..++++++.++.
T Consensus 334 y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp-------~~e~~~~~L~Re~~~~~~ 384 (719)
T PRK11519 334 YTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMP-------KTQQEIVRLTRDVESGQQ 384 (719)
T ss_pred hcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHHHHHH
Confidence 333344455556666677777777776655321 123355666666666444
No 154
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.04 E-value=1.6e+02 Score=29.41 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHH
Q 006784 294 QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET 347 (631)
Q Consensus 294 QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLav 347 (631)
.+++-|..-...++.+.+.-+.+...+..+...+.+|+..---||.+-+-.||-
T Consensus 35 em~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr 88 (219)
T TIGR02977 35 EMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLAR 88 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 344455566667899999999999999999999999998777777777766653
No 155
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=62.36 E-value=1.4e+02 Score=28.13 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=48.4
Q ss_pred HhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 006784 262 TTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTK 329 (631)
Q Consensus 262 ~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k 329 (631)
..-+..+.+-+.|.+-.++..+--.+|-.++.+|+..+++=..--.|+.+|+.+||-.++-++..++.
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777888888888888888888888888777766666778888888888888777655543
No 156
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=62.22 E-value=2.5 Score=47.57 Aligned_cols=66 Identities=21% Similarity=0.371 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006784 385 TRMIQALREELASVERRAEEERAAH------NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452 (631)
Q Consensus 385 ~qalqaLREeLa~AE~rL~~Ereah------~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLe 452 (631)
..+|+--+.+|.+.|.||++=++-+ -..|+-+||-|.+ ++-++|..+|..=||.++.+-+++.-|.
T Consensus 407 ~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELr--re~~~m~~~~~~kqrii~aQ~~~i~~Ld 478 (495)
T PF12004_consen 407 QKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELR--REHAEMQAVLDHKQRIIDAQEKRIAALD 478 (495)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhh--hhHHHHhcccccchHHHHHhhhhccccc
Confidence 4456667889999999888766664 7788888884444 4455777777778888888877765443
No 157
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.02 E-value=4.2e+02 Score=33.49 Aligned_cols=131 Identities=20% Similarity=0.314 Sum_probs=85.7
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhh----hhH----------HHHHHHHHHHHHHHHHHHHHH
Q 006784 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT----ETR----------MIQALREELASVERRAEEERA 407 (631)
Q Consensus 342 dSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~----e~q----------alqaLREeLa~AE~rL~~Ere 407 (631)
......++.-++.....+.+.+++-++...++...++.+... .++ |.-.=+++|.-.++--+-.+.
T Consensus 316 kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~ 395 (1141)
T KOG0018|consen 316 KKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQD 395 (1141)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 444445556666666677788888888888888888855521 111 111115555555544433333
Q ss_pred H--H-------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 408 A--H-------NATKMAAMEREV-ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (631)
Q Consensus 408 a--h-------~atr~aamERE~-eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDy 472 (631)
. | ...|........ ++..++..+..-++...|.+.+.+...+.|+..+.+++-+-.-++-||.+-
T Consensus 396 ~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~ 470 (1141)
T KOG0018|consen 396 TLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEV 470 (1141)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3 2 223333333333 455667777777788999999999999999999999999988888888773
No 158
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=61.66 E-value=2e+02 Score=29.64 Aligned_cols=102 Identities=21% Similarity=0.293 Sum_probs=54.5
Q ss_pred HhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAM 417 (631)
Q Consensus 338 laAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah~atr~aam 417 (631)
+.-|.++|+-||.-|-++...+...-+.+=.| |..|..+-..+..=...-...+.+.-
T Consensus 5 vCqk~GEIsLLKqQLke~q~E~~~K~~Eiv~L----------------------r~ql~e~~~~l~~~~~~~~~l~~~~~ 62 (202)
T PF06818_consen 5 VCQKSGEISLLKQQLKESQAEVNQKDSEIVSL----------------------RAQLRELRAELRNKESQIQELQDSLR 62 (202)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHH----------------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34578888888888888877776665555444 33333333222111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (631)
Q Consensus 418 ERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDy 472 (631)
.+..++|. .+-.+...+..+.-|..++..++.++..|+.++...
T Consensus 63 ~K~~ELE~-----------ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 63 TKQLELEV-----------CENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhhHhHHH-----------hHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 22222332 222333344456667777888888888888888776
No 159
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=61.30 E-value=45 Score=29.85 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=22.7
Q ss_pred HhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHH
Q 006784 256 AQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQL 295 (631)
Q Consensus 256 ~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QL 295 (631)
.-.||+-+|.-++.|+..|......+++--+.|..||+||
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qL 58 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455555555556666666555555555555555555543
No 160
>PRK11519 tyrosine kinase; Provisional
Probab=61.09 E-value=3.3e+02 Score=31.94 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=20.4
Q ss_pred HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q 006784 560 KQTQLETMASEKAAAEFQLEKEMNRLQEVQSE 591 (631)
Q Consensus 560 KQTqLEaLatEKaAlqlQLER~~~q~reaQ~e 591 (631)
+|.++..|-.+....+--.+-.++++.+++..
T Consensus 368 ~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~ 399 (719)
T PRK11519 368 TQQEIVRLTRDVESGQQVYMQLLNKQQELKIT 399 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45555566666666666667777777776543
No 161
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=59.77 E-value=3.9e+02 Score=32.40 Aligned_cols=39 Identities=33% Similarity=0.492 Sum_probs=32.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHhhhhh
Q 006784 500 VERARQGQRDAENKLSSLEAEVQKMRVE----------MAAMKRDAEHY 538 (631)
Q Consensus 500 ve~aR~~qreae~~lss~~aElq~lr~E----------~a~lkrda~~~ 538 (631)
.++|+-+|.+---++..+++|||.||.= ++.||..++..
T Consensus 178 ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~ 226 (769)
T PF05911_consen 178 AEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESL 226 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHh
Confidence 3688889999999999999999988865 67788777765
No 162
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=59.57 E-value=2e+02 Score=28.90 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=17.1
Q ss_pred hhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 006784 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELL 299 (631)
Q Consensus 264 ~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLL 299 (631)
|.+++...+.+-+.+......+..+..||..|-+=|
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL 64 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPL 64 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334444444444444444555555555555443333
No 163
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=59.55 E-value=2.1e+02 Score=32.69 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=35.5
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhh
Q 006784 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (631)
Q Consensus 342 dSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~ 382 (631)
-+|+.+|+...++....+..++-.|..||.+...|..++.-
T Consensus 33 ~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 33 SAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999988777644
No 164
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=59.11 E-value=1.2e+02 Score=28.66 Aligned_cols=87 Identities=21% Similarity=0.189 Sum_probs=51.2
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHH----hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHH
Q 006784 280 GLSSRLQEYKSENAQLEELLVAEREL----SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (631)
Q Consensus 280 qls~rLs~lr~EN~QLEeLLr~E~~~----~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdea 355 (631)
|+.+++..++..-.+++..|..-+.- ..+-++.--.+..-++.+ ...+..||.+|.++
T Consensus 37 g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~s------------------q~~i~~lK~~L~~a 98 (142)
T PF04048_consen 37 GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISES------------------QERIRELKESLQEA 98 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
Confidence 45556666666666666666544433 233333333333333333 66678889999999
Q ss_pred HHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHH
Q 006784 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392 (631)
Q Consensus 356 dq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLR 392 (631)
+..|..+.+.|..|-... .....||+.|-
T Consensus 99 k~~L~~~~~eL~~L~~~s--------~~~~~mi~iL~ 127 (142)
T PF04048_consen 99 KSLLGCRREELKELWQRS--------QEYKEMIEILD 127 (142)
T ss_pred HHHHhcCCHHHHHHHHHH--------HHHHHHHHHHH
Confidence 999988888888874332 22455666553
No 165
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=58.92 E-value=3.9e+02 Score=32.15 Aligned_cols=115 Identities=21% Similarity=0.299 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcccCC
Q 006784 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM-------LEVECATLQQELQDMEARLKRGQKK 482 (631)
Q Consensus 410 ~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~-------lka~~esl~QELqDyk~KA~R~lkk 482 (631)
+..+-+.-. |+-++..+.+.-.. ...++..|+.++.. +..++..+.|-|..++-++.
T Consensus 499 k~L~~ek~~----l~~~i~~l~~~~~~-------~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~----- 562 (698)
T KOG0978|consen 499 KLLREEKSK----LEEQILTLKASVDK-------LELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQ----- 562 (698)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH-----
Confidence 444444444 56565555544222 33444445555544 44444444444444554444
Q ss_pred CchHHHHHH-----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 006784 483 SPEEANQAI-----QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEH 543 (631)
Q Consensus 483 ~~E~agq~i-----e~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~ 543 (631)
++++.+ ++......++..+..-.++..++.-+...+..++.|+..+++-+.+..+.++
T Consensus 563 ---e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 563 ---EAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344443 3345566667777777788888888888888899999999998887655433
No 166
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.62 E-value=2.7e+02 Score=30.09 Aligned_cols=180 Identities=25% Similarity=0.301 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHH-H------------------H
Q 006784 398 VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAG-ELEQKV-A------------------M 457 (631)
Q Consensus 398 AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~-eLeqqv-~------------------~ 457 (631)
||+||..-|.+.+.+|. -|+.+||+|.-|+-.. ..|.+.....+.. .+..-. . -
T Consensus 1 AEarlaakR~araEAR~---iRmreLErqqkE~ee~---~Dr~~~~~~Sr~~s~ls~~t~~S~~~sSSRRsS~DtSsS~d 74 (302)
T PF09738_consen 1 AEARLAAKRAARAEARE---IRMRELERQQKEQEEN---SDRRYDSSSSRRHSDLSQWTLNSLRGSSSRRSSGDTSSSVD 74 (302)
T ss_pred ChhhHHHHHHhhHHHHH---HHHHHHHHHHHHHHhh---hhhhhhcccCccCCccchhhhcCCCCCCCCCCCCccccccc
Confidence 68888888888777765 4556899987775443 4444443332221 111110 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHH----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 458 LEVECATLQQELQDMEARLKRGQKKSPEEANQAIQM----QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKR 533 (631)
Q Consensus 458 lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~----~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkr 533 (631)
.++.+..++-+|.+.+.|-+.. +=...|+ +.+.=+|+...-...+.+..+..++.+...---+++.+|+
T Consensus 75 se~s~r~lk~~l~evEekyrkA-------Mv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~ 147 (302)
T PF09738_consen 75 SEASLRDLKDSLAEVEEKYRKA-------MVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKR 147 (302)
T ss_pred ccccHHHHHHHHHHHHHHHHHH-------HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234556677777777776632 1111122 3455555555555555555555555554433344555555
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHH-------------------------------------HHHHH-------HHHHhhh
Q 006784 534 DAEHYSREEHMELEKRYRELTDLL-------------------------------------YYKQT-------QLETMAS 569 (631)
Q Consensus 534 da~~~srq~~~ELE~RlrELTdlL-------------------------------------y~KQT-------qLEaLat 569 (631)
..+. -+....+|...|++.-+++ .++.. .|-.|+-
T Consensus 148 ~~d~-L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~ 226 (302)
T PF09738_consen 148 AHDS-LREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLAD 226 (302)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHH
Confidence 4432 1223444555554432221 12222 4677888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 006784 570 EKAAAEFQLEKEMNRLQEVQSE 591 (631)
Q Consensus 570 EKaAlqlQLER~~~q~reaQ~e 591 (631)
||-.|.-|+.+.-.++-+-+..
T Consensus 227 eke~L~~qv~klk~qLee~~~~ 248 (302)
T PF09738_consen 227 EKEELLEQVRKLKLQLEERQSE 248 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888887777666654
No 167
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.52 E-value=4.2e+02 Score=32.34 Aligned_cols=44 Identities=18% Similarity=0.010 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH
Q 006784 543 HMELEKRYRELTD-LLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (631)
Q Consensus 543 ~~ELE~RlrELTd-lLy~KQTqLEaLatEKaAlqlQLER~~~q~r 586 (631)
...|..+...++- -+.....+|+.+..+......+|+...+.+.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 483 (1042)
T TIGR00618 439 YAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHL 483 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555 5555566666666666666666665555443
No 168
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.24 E-value=3.4e+02 Score=31.24 Aligned_cols=141 Identities=21% Similarity=0.191 Sum_probs=75.2
Q ss_pred cchhhhhhhhHHHhhhhcCCCCcchhhhHHHHhhhHHHhh---hhh-----------------------hhHHHHHHHHH
Q 006784 225 DVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTI---STG-----------------------QSKEARLARVC 278 (631)
Q Consensus 225 d~kve~~~n~k~qq~~kaD~~p~k~q~ql~e~~~lL~~~~---~~~-----------------------~~ke~rL~rv~ 278 (631)
.+..++.-|.+.|-..|-+.+..+.+-.--..+..|.+.. ++| --|-.-|.|-+
T Consensus 152 eln~e~~dny~~qsl~k~~ls~~~~a~~snsptkriss~~~~nssg~ssn~~~tedl~~e~mee~r~di~~kv~flerkv 231 (502)
T KOG0982|consen 152 ELNTESWDNYKYQSLEKDLLSVKKDAERSNSPTKRISSSSSFNSSGKSSNKLETEDLLVEGMEEERIDIERKVRFLERKV 231 (502)
T ss_pred hhccchHHHHHHHHHHhhhccccchhhccCchhhhhhhhhhcccccccccccchhhhhhhhhhchhhhHHHHHHHHHHHH
Confidence 3555666677777777776665554422222233333211 111 11222234444
Q ss_pred hhhhh-------hhhhhhhhhHHH-------HHHHH-HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccc
Q 006784 279 AGLSS-------RLQEYKSENAQL-------EELLV-AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNS 343 (631)
Q Consensus 279 ~qls~-------rLs~lr~EN~QL-------EeLLr-~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdS 343 (631)
-+|.. +-+.+|-||.|| |++++ +|--.+.+|..+.+.-.+-| ..++|.-+-+.|-+-+++-
T Consensus 232 ~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil----~k~eReasle~Enlqmr~q 307 (502)
T KOG0982|consen 232 QELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREIL----IKKEREASLEKENLQMRDQ 307 (502)
T ss_pred HHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 44444 456788899987 44555 44444666666644433333 1223333555566666666
Q ss_pred hhHHHHHHHHHHHHHHHhhHhHHHHH
Q 006784 344 EIETLVSSIDALKKQAALSEGNLASL 369 (631)
Q Consensus 344 qLavLkvrLdeadq~l~~~~~~Leel 369 (631)
||+.=..+|-..-..+++...+|++-
T Consensus 308 qleeentelRs~~arlksl~dklaee 333 (502)
T KOG0982|consen 308 QLEEENTELRSLIARLKSLADKLAEE 333 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66666666666666666666666653
No 169
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=58.24 E-value=2.8e+02 Score=30.22 Aligned_cols=104 Identities=28% Similarity=0.393 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHh--hhhhHHHHHHH----HHHHHHHHHH---HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006784 492 QMQAWQDEVERARQ--GQRDAENKLSS----LEAEVQKMRV---EMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQT 562 (631)
Q Consensus 492 e~~~~q~Eve~aR~--~qreae~~lss----~~aElq~lr~---E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQT 562 (631)
-++.+..+++...- +||.+ .|.+ ++++.++.+. |...|+|.-.. =...-..||+.-.-|+--|..|-.
T Consensus 19 KIqelE~QldkLkKE~qQrQf--QleSlEAaLqKQKqK~e~ek~e~s~LkREnq~-l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQF--QLESLEAALQKQKQKVEEEKNEYSALKRENQS-LMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-HHHHHHHHHHHHHHhhHHHhhhHH
Confidence 45666667764432 23333 3333 3444444433 47888888742 234557899999999999999999
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 006784 563 QLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVS 598 (631)
Q Consensus 563 qLEaLatEKaAlqlQLER~~~q~reaQ~e~ersr~~ 598 (631)
|+--|-.--++.--|+|++.+-++--..+.|||+..
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988876
No 170
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=57.48 E-value=3.8e+02 Score=31.50 Aligned_cols=53 Identities=17% Similarity=0.111 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhh
Q 006784 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQG 506 (631)
Q Consensus 447 Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~ 506 (631)
++.+-+-.|..++...++|++++..++.+.... .....++..++++++..+.-
T Consensus 333 ~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~-------p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 333 LYKKDHPTYRALLEKRQTLEQERKRLNKRVSAM-------PSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred HhcccCchHHHHHHHHHHHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666677777777776655422 12334566677777665543
No 171
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=56.85 E-value=16 Score=36.18 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=14.7
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006784 487 ANQAIQMQA-WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA 535 (631)
Q Consensus 487 agq~ie~~~-~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda 535 (631)
.|++||--+ |+.|| ++...++-++|-|++|+..||+++
T Consensus 9 lN~AIERnalLE~EL-----------dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 9 LNQAIERNALLESEL-----------DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHCH--------------
T ss_pred HHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456776666 44455 345558888888888888888887
No 172
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=56.80 E-value=3.7e+02 Score=31.17 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=42.9
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHhhhhhhhhhh
Q 006784 278 CAGLSSRLQEYKSENAQLEELLVAEREL-----------SRSYEARIKQLEQELSVYKSEVTKV 330 (631)
Q Consensus 278 ~~qls~rLs~lr~EN~QLEeLLr~E~~~-----------~~Sl~ar~k~lQ~ELs~ar~~v~k~ 330 (631)
+.-.-.+|+-||+||-|-++.|.+|..+ ++-|.+.|++.++++.++|+++-.-
T Consensus 509 ~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~IL~N 572 (583)
T KOG3809|consen 509 IDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTKEEISKARGRILNN 572 (583)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456789999999999999999999876 5667777888888888888776543
No 173
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=56.79 E-value=71 Score=27.68 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHH
Q 006784 265 STGQSKEARLARVCAGLSSRLQEYKSENAQLE 296 (631)
Q Consensus 265 ~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLE 296 (631)
..+..|...+..++.-|..++..|+-+|..|.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34566777777888888888888888877554
No 174
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=55.84 E-value=5.2e+02 Score=32.64 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH
Q 006784 548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (631)
Q Consensus 548 ~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~reaQ 589 (631)
..-++|++-|.+=-+.+..++.+.....-+|++.-++++-.+
T Consensus 265 ~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~ 306 (1109)
T PRK10929 265 KINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLR 306 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888887777888999988888888888888888554
No 175
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=55.73 E-value=2.5e+02 Score=28.95 Aligned_cols=80 Identities=25% Similarity=0.287 Sum_probs=55.7
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 006784 257 QGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAE 336 (631)
Q Consensus 257 ~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~Esdlte 336 (631)
-.+++..|..+..|..+=.+.++|. +.+. +.-|..-....+.++++-++|+.+|+.++.++.+|+..--.
T Consensus 8 ~~~~~a~~~~~~dk~EDp~~~l~Q~---ird~-------~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~ 77 (225)
T COG1842 8 KDLVKANINELLDKAEDPEKMLEQA---IRDM-------ESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAEL 77 (225)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666555544444432 1111 22344555568899999999999999999999999999999
Q ss_pred HHhcccchhH
Q 006784 337 ALAAKNSEIE 346 (631)
Q Consensus 337 AlaAKdSqLa 346 (631)
||.+-+-.|+
T Consensus 78 Al~~g~E~LA 87 (225)
T COG1842 78 ALQAGNEDLA 87 (225)
T ss_pred HHHCCCHHHH
Confidence 9988884443
No 176
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=55.62 E-value=3.9e+02 Score=31.08 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=59.5
Q ss_pred ccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (631)
Q Consensus 341 KdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Erea 408 (631)
...|+..|...++.....++.-+..|..|-....+=-.+++..++.||..+|.....--.+++.||++
T Consensus 138 e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~ 205 (508)
T PF00901_consen 138 EENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKIDALKNAIEVEREG 205 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35689999999999999999999999988666666667777789999999999999999999999876
No 177
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=55.34 E-value=2.6e+02 Score=28.90 Aligned_cols=108 Identities=19% Similarity=0.287 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhh---
Q 006784 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL--- 382 (631)
Q Consensus 306 ~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~--- 382 (631)
+.+|.+.++++...|.....+ -.++..++-.|.-+|++....|+.....+....+++..+..+...+-.....
T Consensus 33 iv~Lr~ql~e~~~~l~~~~~~----~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~ 108 (202)
T PF06818_consen 33 IVSLRAQLRELRAELRNKESQ----IQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGR 108 (202)
T ss_pred HHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhcc
Confidence 444444444444444332111 1445556666666777666666665555444444444443333322221111
Q ss_pred ---------------hh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 383 ---------------TE----TRMIQALREELASVERRAEEERAAHNATKMAAM 417 (631)
Q Consensus 383 ---------------~e----~qalqaLREeLa~AE~rL~~Ereah~atr~aam 417 (631)
.+ ...+.+|+.++..--+.|..||..+..-...|-
T Consensus 109 ~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe 162 (202)
T PF06818_consen 109 LKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFE 162 (202)
T ss_pred chhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11 234677777776666666666666554444443
No 178
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=55.29 E-value=2.2e+02 Score=28.15 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHH
Q 006784 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQA 495 (631)
Q Consensus 416 amERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~ 495 (631)
..-|...|...+.+.-.+|..+...+++...++..+.+.+.+....++. ..+ +++|=..+..+.
T Consensus 13 r~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~----------m~~---gg~~f~i~~~~~--- 76 (158)
T PF09486_consen 13 RRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDA----------MMT---GGAPFSIDEYLA--- 76 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----------HHc---CCCCccHHHHHH---
Confidence 3445555666666666666666666666666555555555444333322 222 223333332222
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006784 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA 535 (631)
Q Consensus 496 ~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda 535 (631)
|+.=++.+....+.++..+..+.+.++....+|+.+.+-+
T Consensus 77 ~~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raI 116 (158)
T PF09486_consen 77 LRRYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAI 116 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555566666666666666666655555544
No 179
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=55.24 E-value=2.3e+02 Score=29.38 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 449 GELEQKVAMLEVECATLQQELQDMEA 474 (631)
Q Consensus 449 ~eLeqqv~~lka~~esl~QELqDyk~ 474 (631)
..++.++..++..+..++..|.++..
T Consensus 181 ~~~~~~l~~~~~~l~~a~~~l~~~~I 206 (331)
T PRK03598 181 AQAKASLAQAQAALAQAELNLQDTEL 206 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCEE
Confidence 44455555556666665555544433
No 180
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.88 E-value=4.3e+02 Score=31.35 Aligned_cols=190 Identities=16% Similarity=0.185 Sum_probs=88.2
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHH----Hh---hhhHhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 342 NSEIETLVSSIDALKKQAALSEGNLASL----QM---NMESIMRNRELT--ETRMIQALREELASVERRAEEERAAHNAT 412 (631)
Q Consensus 342 dSqLavLkvrLdeadq~l~~~~~~Leel----Q~---e~~RImqdh~~~--e~qalqaLREeLa~AE~rL~~Ereah~at 412 (631)
-+++..+.-|++..+|.+.++-+-.-.| |+ ..+--=+|++.. -.+.+-++|-.-..-=++|..-++..-.-
T Consensus 249 r~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~er~IerLkeqr~rderE 328 (654)
T KOG4809|consen 249 RSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVERIIERLKEQRERDERE 328 (654)
T ss_pred HhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHHHHHHHhcchhhhhHHH
Confidence 3455566666666666665554443333 22 111122344443 12223333322111122333333333444
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cc------cC
Q 006784 413 KMAAMEREVELEHR-AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK----RG------QK 481 (631)
Q Consensus 413 r~aamERE~eLE~q-~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~----R~------lk 481 (631)
+++.++ .++=|.+ ++|-+.+ .++.+.|.-.-.-+|+..+-++++.-.-+.-+|.+.+.... -+ ++
T Consensus 329 ~~EeIe-~~~ke~kdLkEkv~~---lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLk 404 (654)
T KOG4809|consen 329 RLEEIE-SFRKENKDLKEKVNA---LQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLK 404 (654)
T ss_pred HHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 3444555 8888888 55556555555566666666655555555555554332211 11 11
Q ss_pred C---CchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006784 482 K---SPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA 535 (631)
Q Consensus 482 k---~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda 535 (631)
+ -..++...-++..+...|+.++--.+..-....++..++=-+-.|+...|+|=
T Consensus 405 kAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDk 461 (654)
T KOG4809|consen 405 KAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDK 461 (654)
T ss_pred HHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 1 11112222244555666666555555554444455554444445555555553
No 181
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=54.37 E-value=2.5e+02 Score=28.47 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=27.4
Q ss_pred hhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006784 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIK 314 (631)
Q Consensus 264 ~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k 314 (631)
+.........|.....++..++.+++..|.+|+.++..-...+.+|..++.
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555566666666666666666655554444555544433
No 182
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.37 E-value=59 Score=28.92 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=41.6
Q ss_pred HHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 006784 255 EAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEAR 312 (631)
Q Consensus 255 e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar 312 (631)
+--.||.-+|-.++.|+..|...+..+.+--.+|..||+||-+--++=.+-..||..+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456788888888888888888888888888888888887765554433334444443
No 183
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.35 E-value=1.3e+02 Score=35.52 Aligned_cols=31 Identities=32% Similarity=0.424 Sum_probs=25.6
Q ss_pred cccchhHHHHHHHHHHHHHHHhhHhHHHHHH
Q 006784 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQ 370 (631)
Q Consensus 340 AKdSqLavLkvrLdeadq~l~~~~~~LeelQ 370 (631)
+.+..|..|...|.+.+.....++.+|+.+.
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888899999998888888888888874
No 184
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=54.27 E-value=3.1e+02 Score=29.59 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006784 451 LEQKVAMLEVECATLQQELQDMEARLKR 478 (631)
Q Consensus 451 Leqqv~~lka~~esl~QELqDyk~KA~R 478 (631)
++.++..+++.+..++.++.-|+.-...
T Consensus 125 ~~a~l~~a~a~l~~a~~~~~R~~~L~~~ 152 (390)
T PRK15136 125 YQANIELQKTALAQAQSDLNRRVPLGNA 152 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3445666677777777777776665543
No 185
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.10 E-value=1.5e+02 Score=34.99 Aligned_cols=88 Identities=22% Similarity=0.429 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006784 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSRE--EHMELEKRYRELTDLLYYKQTQLETMAS 569 (631)
Q Consensus 492 e~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq--~~~ELE~RlrELTdlLy~KQTqLEaLat 569 (631)
.+..+.+-|+........++..+.+++++...|+.+++.+++.++.--+. .-..++.+...|+--|..|-+.+|.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~--- 499 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE--- 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 44556666777777777888888888889999999988888888743332 3355778888888777776666664
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 006784 570 EKAAAEFQLEKEMNRLQEVQS 590 (631)
Q Consensus 570 EKaAlqlQLER~~~q~reaQ~ 590 (631)
|++.+.+++.-+.
T Consensus 500 --------L~~~l~~l~k~~~ 512 (652)
T COG2433 500 --------LERKLAELRKMRK 512 (652)
T ss_pred --------HHHHHHHHHHHHh
Confidence 5566655555553
No 186
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=52.70 E-value=1.2e+02 Score=33.90 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=32.3
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhh
Q 006784 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (631)
Q Consensus 333 dlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImq 378 (631)
++.+.+..-..+++.|..++.++.+.+...+.+|+.|+.++..+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455555566677777777777777777777777777777766654
No 187
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=52.29 E-value=1.8e+02 Score=29.99 Aligned_cols=79 Identities=19% Similarity=0.125 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhH----HHHHHHHHHHHHHHHhhhhccccCcccccccccccccccccchhhc
Q 006784 550 YRELTDLLYYKQTQLETMASEKAAAEFQLE----KEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEYVKIHFFIAI 625 (631)
Q Consensus 550 lrELTdlLy~KQTqLEaLatEKaAlqlQLE----R~~~q~reaQ~e~ersr~~rr~~~~~~~d~~~~~~e~~~~~~~~~~ 625 (631)
|++..+.+=..+.+|..+-+..++.+-+|. ....++...+.. ..+.........-.==..+++|.-|+-++..+.
T Consensus 184 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~-~~a~~~~~~~~~~G~l~R~~Al~~L~~~~~~~~ 262 (301)
T PF14362_consen 184 YKEKRAQLDAAQAELDTLQAQIDAAIAALDAQIAARKARLDEARQA-KVAEFQAIISANDGFLARLEALWELTKEDPSAL 262 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHhHhhccCCCHHHHHHHHHHHHhCCCcHH
Confidence 666666666666777777777666666666 555555555433 211111111111111135667777776665555
Q ss_pred cccc
Q 006784 626 IPCW 629 (631)
Q Consensus 626 ~~~~ 629 (631)
+++|
T Consensus 263 ~~~~ 266 (301)
T PF14362_consen 263 LASL 266 (301)
T ss_pred HHHH
Confidence 5544
No 188
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=51.91 E-value=4e+02 Score=30.12 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 508 RDAENKLSSLEAEVQKMRVEMAAMK 532 (631)
Q Consensus 508 reae~~lss~~aElq~lr~E~a~lk 532 (631)
..+...+..-..|+++|+..|....
T Consensus 358 s~~~~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 358 SPLQLKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445556778888888876655
No 189
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=51.64 E-value=1.5e+02 Score=26.15 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhh
Q 006784 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (631)
Q Consensus 309 l~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImq 378 (631)
+-..-+.++.++...|++....-..+..+..++ ...+.|+.+..+.+..+...+..+.+++.+...+|-
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555444444444444 567888888888899999999999998888877763
No 190
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=51.62 E-value=5.5e+02 Score=31.65 Aligned_cols=36 Identities=14% Similarity=0.053 Sum_probs=17.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 438 QRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (631)
Q Consensus 438 qR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk 473 (631)
+..+.+.......++..+..+...+..+++++....
T Consensus 716 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 751 (1047)
T PRK10246 716 LDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQ 751 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555544433
No 191
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=50.64 E-value=7.8 Score=34.59 Aligned_cols=99 Identities=28% Similarity=0.392 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhh
Q 006784 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQG 506 (631)
Q Consensus 427 ~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~ 506 (631)
+......+..+.+...+-+.++.+|+.++..++..-..+++-|..+...+..+....-..+...+ ..+
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~------------~~A 94 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEAEEII------------EEA 94 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH------------HHH
Confidence 34444444455555555555555555555555555555555554444444333332222222111 122
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006784 507 QRDAENKLSSLEAEVQKMRVEMAAMKRDAEH 537 (631)
Q Consensus 507 qreae~~lss~~aElq~lr~E~a~lkrda~~ 537 (631)
+..+..-+....+++..+..++..|+++...
T Consensus 95 ~~~a~~i~~~A~~~~~~l~~~~~~lk~~~~~ 125 (131)
T PF05103_consen 95 QKEAEEIIEEARAEAERLREEIEELKRQAEQ 125 (131)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555677777777788888777654
No 192
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=50.33 E-value=2.3e+02 Score=26.82 Aligned_cols=69 Identities=26% Similarity=0.331 Sum_probs=42.0
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH 409 (631)
Q Consensus 333 dlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah 409 (631)
.+..-|++-+..|+..|.+.+++.++=..++..+..|+.. ..+.++-+.-|+.++.++.+.+.-|..++
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q--------~~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQ--------NASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666777777777765555555444444333 33456677778888888888777665543
No 193
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=50.06 E-value=1.5e+02 Score=24.81 Aligned_cols=85 Identities=25% Similarity=0.366 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 006784 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 525 (631)
Q Consensus 446 ~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr 525 (631)
.....+.+++...+..+..|...+.+|........ .+-.+.++..++.-+.............+..+..++..++
T Consensus 5 ~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r 79 (123)
T PF02050_consen 5 QELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-----QGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAR 79 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666643333211 1223345556666666666566666666666666666665
Q ss_pred HHHHHHHHhh
Q 006784 526 VEMAAMKRDA 535 (631)
Q Consensus 526 ~E~a~lkrda 535 (631)
..+....++.
T Consensus 80 ~~l~~a~~~~ 89 (123)
T PF02050_consen 80 EELQEARRER 89 (123)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444444
No 194
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=48.65 E-value=4.2e+02 Score=33.29 Aligned_cols=112 Identities=15% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHhcccCCCchH---HHHHH------HHHHHHHHHHHHHh---------hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 471 DMEARLKRGQKKSPEE---ANQAI------QMQAWQDEVERARQ---------GQRDAENKLSSLEAEVQKMRVEMAAMK 532 (631)
Q Consensus 471 Dyk~KA~R~lkk~~E~---agq~i------e~~~~q~Eve~aR~---------~qreae~~lss~~aElq~lr~E~a~lk 532 (631)
||-.||.-|..||--. +-..+ ++..|.+.|..||. ..+.-+.+...+..+++.|+.|++.++
T Consensus 382 EYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~ 461 (1041)
T KOG0243|consen 382 EYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLE 461 (1041)
T ss_pred HHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHH
Q 006784 533 RDAEHYSRE------EHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (631)
Q Consensus 533 rda~~~srq------~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~ 582 (631)
..+...... ....|-+++..+=+-|..+=..|+.|..|..-++.+|..++
T Consensus 462 ~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e 517 (1041)
T KOG0243|consen 462 KQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEE 517 (1041)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 195
>PRK09343 prefoldin subunit beta; Provisional
Probab=48.35 E-value=2.3e+02 Score=26.29 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=46.4
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhh
Q 006784 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (631)
Q Consensus 332 sdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~ 383 (631)
.|..+|..-=+..++.+..++.....+.......+.++|.....+++.+..+
T Consensus 67 qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~ 118 (121)
T PRK09343 67 VDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQ 118 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7888888888899999999999999999999999999999999998876543
No 196
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.19 E-value=2.4e+02 Score=26.59 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=26.4
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhH
Q 006784 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (631)
Q Consensus 342 dSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~R 375 (631)
..++..|..||+.+=+.+.-..+.+++|+.+..-
T Consensus 74 ~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 74 EQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4566778888888888888888888888877554
No 197
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=48.15 E-value=3.2e+02 Score=27.99 Aligned_cols=186 Identities=16% Similarity=0.256 Sum_probs=0.0
Q ss_pred hHHHHHhcccch-------hHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006784 333 NLAEALAAKNSE-------IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE 405 (631)
Q Consensus 333 dlteAlaAKdSq-------LavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~E 405 (631)
||-+++..-.-+ +..|+.++++..+...-+..-+++.+.-...+|.+ .
T Consensus 6 d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e-------------------------~ 60 (207)
T PF05010_consen 6 DLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE-------------------------K 60 (207)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------------------------H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Q 006784 406 RAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG------ 479 (631)
Q Consensus 406 reah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~------ 479 (631)
+.-.......-.. +-.+...+..=|..+++.+.+--+|+.-+..-+.-.+.+=++|+..+.||..+....
T Consensus 61 ~~~~~~~~~~i~~----~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~a 136 (207)
T PF05010_consen 61 QKQKELSEAEIQK----LLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQA 136 (207)
T ss_pred HhhHHhHHHHHHH----HHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 006784 480 QKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYY 559 (631)
Q Consensus 480 lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~ 559 (631)
+| +.+.-.+..--.+++. -.+.+.+.+..+++.+.+.+..+.+|...++. ...+-.||-+ +.|=||.
T Consensus 137 LK-----~hAeekL~~ANeei~~---v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQ-K~kEn~ELtk----ICDeLI~ 203 (207)
T PF05010_consen 137 LK-----AHAEEKLEKANEEIAQ---VRSKHQAELLALQASLKKEEMKVQSLEESLEQ-KTKENEELTK----ICDELIS 203 (207)
T ss_pred HH-----HHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHH
Q ss_pred H
Q 006784 560 K 560 (631)
Q Consensus 560 K 560 (631)
|
T Consensus 204 k 204 (207)
T PF05010_consen 204 K 204 (207)
T ss_pred H
No 198
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=48.15 E-value=3.8e+02 Score=28.72 Aligned_cols=125 Identities=22% Similarity=0.282 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHH
Q 006784 389 QALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQ-------KVAMLEVE 461 (631)
Q Consensus 389 qaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeq-------qv~~lka~ 461 (631)
..|+++|-.--.+. +-|+-||..-+...+ ||.+++++= |..+...+..+..++..+.. +|..+...
T Consensus 138 ~~L~eKlK~l~eQy-e~rE~~~~~~~k~ke----LE~Ql~~AK--l~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~ 210 (309)
T PF09728_consen 138 EELREKLKSLIEQY-ELREEHFEKLLKQKE----LEVQLAEAK--LEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKET 210 (309)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhHHH----HHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666554444 245667766665555 888876653 44567777788888888888 88888888
Q ss_pred HHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006784 462 CATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEH 537 (631)
Q Consensus 462 ~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~ 537 (631)
-..|+..|.-|..|-.--+. =+.....-=..+..+|..+...+.+++-|...+++-.+.
T Consensus 211 E~~Lr~QL~~Y~~Kf~efq~-----------------tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~ 269 (309)
T PF09728_consen 211 EKELREQLNLYSEKFEEFQD-----------------TLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEK 269 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999877654321 111111122255556666666666666666666665543
No 199
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=47.97 E-value=5.7e+02 Score=32.67 Aligned_cols=156 Identities=21% Similarity=0.272 Sum_probs=92.7
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHhcccCCCchHHH
Q 006784 422 ELEHR-AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD------------MEARLKRGQKKSPEEAN 488 (631)
Q Consensus 422 eLE~q-~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqD------------yk~KA~R~lkk~~E~ag 488 (631)
-||.| ++++..||..+=-.-+.-+ =-.+|..|...+++.+++|+.-+.- |+.-...+
T Consensus 1039 ALeKqnIa~AL~ALn~IPSdKEms~-Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~i--------- 1108 (1439)
T PF12252_consen 1039 ALEKQNIAGALQALNNIPSDKEMSK-ISSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDI--------- 1108 (1439)
T ss_pred HHHhhhHHHHHHHHhcCCchhhhhh-hhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHH---------
Confidence 36677 8888888776655544444 5567788888888888887532210 22111111
Q ss_pred HHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH-----
Q 006784 489 QAIQMQAWQDEVERARQ----GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYY----- 559 (631)
Q Consensus 489 q~ie~~~~q~Eve~aR~----~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~----- 559 (631)
..-=.+++.+-. ....+-..+..+++|+.-||-|...|-.+.+..--.+-..||+||+.+..-||-
T Consensus 1109 -----TKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~e 1183 (1439)
T PF12252_consen 1109 -----TKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVE 1183 (1439)
T ss_pred -----HHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 000001111100 122344567779999999999988886665543335778899999999888863
Q ss_pred --HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006784 560 --KQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAER 594 (631)
Q Consensus 560 --KQTqLEaLatEKaAlqlQLER~~~q~reaQ~e~er 594 (631)
| |+.+|.+||--=.--+...+..|.+-=++.+.
T Consensus 1184 itK--qIsaLe~e~PKnltdvK~missf~d~laeiE~ 1218 (1439)
T PF12252_consen 1184 ITK--QISALEKEKPKNLTDVKSMISSFNDRLAEIEF 1218 (1439)
T ss_pred HHH--HHHHHHhhCCCchhhHHHHHHHHHhhhhHHHH
Confidence 3 45555555543333566666666665555543
No 200
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=47.95 E-value=91 Score=26.48 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006784 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEH 537 (631)
Q Consensus 494 ~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~ 537 (631)
+.+++|+...+...-.++..|.........|..||..|+..++-
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778888888888888888888888888888888888888764
No 201
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=47.39 E-value=1.9e+02 Score=32.35 Aligned_cols=36 Identities=28% Similarity=0.485 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006784 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAM 531 (631)
Q Consensus 496 ~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~l 531 (631)
..+++..++...++++.++..++.+++.++.++..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444444444444333
No 202
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=47.00 E-value=2.8e+02 Score=26.94 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHhhh
Q 006784 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELE---KRYRELTDLLYYKQTQLETMAS 569 (631)
Q Consensus 493 ~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE---~RlrELTdlLy~KQTqLEaLat 569 (631)
+..++++++.....+..++......++++..|..+|..|...... .+.+|- ..-..|+-+|-.||-++..|-+
T Consensus 26 v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~----L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 26 VESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQ----LELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665555555544444444444444444444443333311 111111 1223466667777777777766
Q ss_pred HHHHHHHHhHHHHHH
Q 006784 570 EKAAAEFQLEKEMNR 584 (631)
Q Consensus 570 EKaAlqlQLER~~~q 584 (631)
=.-+...-|+..+..
T Consensus 102 ~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 102 LNSSLENLLQEKEQE 116 (140)
T ss_pred HhHHHHHHHHHHHHH
Confidence 666666666555543
No 203
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=46.92 E-value=1.6e+02 Score=34.07 Aligned_cols=86 Identities=27% Similarity=0.388 Sum_probs=60.1
Q ss_pred hhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccc
Q 006784 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNS 343 (631)
Q Consensus 264 ~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdS 343 (631)
+..--+|.......|.-|..||.....+...+++-| .+..+++..||+||.--|..-+.==+.|+|-|+.-|-
T Consensus 429 lQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL-------~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNe 501 (518)
T PF10212_consen 429 LQHADSKAVHFYAECRALQKRLESAEKEKESLEEEL-------KEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNE 501 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334478999999999999999998888887555443 4556688999999955544433333777777777666
Q ss_pred hhHHHHHHHHHHH
Q 006784 344 EIETLVSSIDALK 356 (631)
Q Consensus 344 qLavLkvrLdead 356 (631)
+|+.-...++..+
T Consensus 502 qL~~Q~eeI~~LK 514 (518)
T PF10212_consen 502 QLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666655544
No 204
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=46.27 E-value=3.3e+02 Score=27.55 Aligned_cols=114 Identities=19% Similarity=0.264 Sum_probs=64.2
Q ss_pred HHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHH
Q 006784 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALK 356 (631)
Q Consensus 277 v~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdead 356 (631)
+++|....|+.|..|..-.|..+..|..++.+...-+.--..-...+ ..++..|+.-|..+.
T Consensus 61 aL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A------------------~~q~~~L~~~l~~a~ 122 (188)
T PF05335_consen 61 ALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQA------------------QQQLETLKAALKAAQ 122 (188)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Confidence 77888888888888888666666665555444333322211111111 334555555555555
Q ss_pred HHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAA 416 (631)
Q Consensus 357 q~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah~atr~aa 416 (631)
..+...+......|.++. ..++||.+-|.|+..-.+.|..=|.-...||.++
T Consensus 123 ~nl~~a~~~a~~AQ~el~--------eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 123 ANLANAEQVAEGAQQELA--------EKTQLLEAAKRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554444332 2577777777777777766655555554554443
No 205
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=46.23 E-value=3.6e+02 Score=27.90 Aligned_cols=23 Identities=17% Similarity=0.201 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 006784 458 LEVECATLQQELQDMEARLKRGQ 480 (631)
Q Consensus 458 lka~~esl~QELqDyk~KA~R~l 480 (631)
++-.+..+.....+|+.+|.-.+
T Consensus 57 ~e~~~~~~~~~~~k~e~~A~~Al 79 (225)
T COG1842 57 LERKLEEAQARAEKLEEKAELAL 79 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555544
No 206
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.21 E-value=1.9e+02 Score=28.13 Aligned_cols=85 Identities=22% Similarity=0.285 Sum_probs=58.2
Q ss_pred hhhhHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHhhhhhhhhhh----hhhHHHHHhcccchhHHHH
Q 006784 289 KSENAQLEELLVAEREL---------------SRSYEARIKQLEQELSVYKSEVTKV----ESNLAEALAAKNSEIETLV 349 (631)
Q Consensus 289 r~EN~QLEeLLr~E~~~---------------~~Sl~ar~k~lQ~ELs~ar~~v~k~----EsdlteAlaAKdSqLavLk 349 (631)
+.+.+.+-.++|+++-. .-++..++..+++.+..++.+.... +.-..+..+..+.+++.|+
T Consensus 88 ~~~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk 167 (192)
T PF05529_consen 88 RTEDQVLAKKFRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLK 167 (192)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 35666667777777644 4466666666666666665554433 1224566677788889999
Q ss_pred HHHHHHHHHHHhhHhHHHHHHhhh
Q 006784 350 SSIDALKKQAALSEGNLASLQMNM 373 (631)
Q Consensus 350 vrLdeadq~l~~~~~~LeelQ~e~ 373 (631)
..|..++..+.++..+.+.++.+.
T Consensus 168 ~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 168 KELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999888888888888888887664
No 207
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=45.86 E-value=3.4e+02 Score=27.51 Aligned_cols=61 Identities=23% Similarity=0.289 Sum_probs=41.0
Q ss_pred HHHhcccchhH-----HHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 336 EALAAKNSEIE-----TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (631)
Q Consensus 336 eAlaAKdSqLa-----vLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Erea 408 (631)
+|-+|.|.|.. ...++.+=+|+-+.+-..+=+.| .|--++|+-|..++++|+..+.+|..+
T Consensus 24 ~Ak~A~daQ~~A~~~Aa~~vk~~lA~kA~qaA~aAeAaL------------~GKq~iveqLe~ev~EAe~vV~ee~~s 89 (188)
T PF05335_consen 24 EAKAANDAQAAAAEQAAQQVKNQLADKAAQAAKAAEAAL------------AGKQQIVEQLEQEVREAEAVVQEEKAS 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555543 44556666666555555554444 355678889999999999999888887
No 208
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=45.85 E-value=3.1e+02 Score=27.11 Aligned_cols=129 Identities=18% Similarity=0.248 Sum_probs=69.7
Q ss_pred hHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh--------
Q 006784 259 LLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV-------- 330 (631)
Q Consensus 259 lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~-------- 330 (631)
.++.+|.+..+=-...-..++..+.+...++.|..++...++. ++.....|...--.||.+..-+
T Consensus 3 Ii~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~-------~I~evD~Le~~er~aR~rL~eVS~~f~~ys 75 (159)
T PF05384_consen 3 IIKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSE-------VIEEVDKLEKRERQARQRLAEVSRNFDRYS 75 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 3555666653333344555666666677777666655555543 3333333333333344444333
Q ss_pred hhhHHHH----------HhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 006784 331 ESNLAEA----------LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400 (631)
Q Consensus 331 EsdlteA----------laAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~ 400 (631)
|.++-+| |+.+..+..-|+.|.|...+.+.-...-++-.+.=+.+| +=+|..|...|...-.
T Consensus 76 E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi--------~vvl~yL~~dl~~v~~ 147 (159)
T PF05384_consen 76 EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQI--------GVVLNYLSGDLQQVSE 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHH
Confidence 3344333 555566666777777777777777776666654433333 4455666666655544
Q ss_pred HH
Q 006784 401 RA 402 (631)
Q Consensus 401 rL 402 (631)
.+
T Consensus 148 ~~ 149 (159)
T PF05384_consen 148 QI 149 (159)
T ss_pred HH
Confidence 44
No 209
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.22 E-value=4.1e+02 Score=28.36 Aligned_cols=121 Identities=20% Similarity=0.295 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006784 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (631)
Q Consensus 496 ~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlq 575 (631)
.+..++.+......++..|...+.+++.++..++.|+.+.+. .-.....|+..+.....-|-.=+..+..|+.|+.-=.
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~-~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE-AQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 445555555555666666666666777776667777766654 2235677777777777778888888888888887666
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhccccCcccccccccccccccccchhhcc-ccc
Q 006784 576 FQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEYVKIHFFIAII-PCW 629 (631)
Q Consensus 576 lQLER~~~q~reaQ~e~ersr~~rr~~~~~~~d~~~~~~e~~~~~~~~~~~-~~~ 629 (631)
-+++....++.-.-+-.--+- .=+--+-|+|-++|..++ .+|
T Consensus 298 ~~~~~l~~~~~~l~GD~llaa------------a~isY~G~f~~~~R~~l~~~~W 340 (344)
T PF12777_consen 298 EQIEELEEQLKNLVGDSLLAA------------AFISYLGPFTPEYRQELLKKMW 340 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH------------HHHHCCCCTSHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcccHHHHHHHH------------HHHHHcCCCCHHHHHHHHHHhc
Confidence 555555444333322211110 113457788888888776 456
No 210
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=45.06 E-value=3.8e+02 Score=27.96 Aligned_cols=15 Identities=0% Similarity=0.127 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhhhh
Q 006784 311 ARIKQLEQELSVYKS 325 (631)
Q Consensus 311 ar~k~lQ~ELs~ar~ 325 (631)
+.++..+..+..++.
T Consensus 121 ~~i~~a~~~l~~a~~ 135 (346)
T PRK10476 121 EQVERARANAKLATR 135 (346)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 211
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=44.66 E-value=41 Score=32.20 Aligned_cols=43 Identities=40% Similarity=0.561 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhH
Q 006784 305 LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGN 365 (631)
Q Consensus 305 ~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~ 365 (631)
++.+|+..++.|+.++ .+||++|..|+..|+++...-..++..
T Consensus 88 li~~yE~~~~kLe~e~------------------~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 88 LIKTYEIVVKKLEAEL------------------RAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3666666666666655 678999999999999988876665543
No 212
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=44.53 E-value=1e+02 Score=31.93 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=38.0
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhH
Q 006784 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (631)
Q Consensus 342 dSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~q 386 (631)
..+++.....|+.++....++..+.+.++.+-+|++.+|+.=+++
T Consensus 164 ~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 164 ETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 455677788888899999999999999999999999998875544
No 213
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=44.31 E-value=1.9e+02 Score=24.88 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=21.0
Q ss_pred hHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhH
Q 006784 259 LLKTTISTGQSKEARLARVCAGLSSRLQEYKSENA 293 (631)
Q Consensus 259 lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~ 293 (631)
-|..+|++++.+.+++.|=.+-.-..+..|+.|+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd 36 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERD 36 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888877777777655544444444444443
No 214
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=44.23 E-value=1.8e+02 Score=26.24 Aligned_cols=50 Identities=22% Similarity=0.239 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471 (631)
Q Consensus 422 eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqD 471 (631)
.||..+..++...+.+|-.++|-|-+-..|.+.+..+...-+.|.+|.+-
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~q 57 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNH 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 58888899999999999999999999999999888855554444444433
No 215
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=44.22 E-value=4.5e+02 Score=28.52 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=25.6
Q ss_pred HHHHHHhhhhhhhhh-----hhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 006784 273 RLARVCAGLSSRLQE-----YKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (631)
Q Consensus 273 rL~rv~~qls~rLs~-----lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ 322 (631)
.++..+.+++..|.. |+....++++-|..=......+..+++.|+..+..
T Consensus 52 ~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 52 EFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555543 44445555554444444455555555555555543
No 216
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=44.20 E-value=3.2e+02 Score=26.84 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006784 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECAT 464 (631)
Q Consensus 423 LE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~es 464 (631)
++.++......+..+...+.+-+.|+.+++.+...+.+....
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~ 144 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENA 144 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666665554443
No 217
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=43.86 E-value=5e+02 Score=28.93 Aligned_cols=133 Identities=15% Similarity=0.187 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCchHHHHHH-----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 006784 448 AGELEQKVAMLEVECATLQQELQDMEARLKRGQ-KKSPEEANQAI-----QMQAWQDEVERARQGQRDAENKLSSLEAEV 521 (631)
Q Consensus 448 a~eLeqqv~~lka~~esl~QELqDyk~KA~R~l-kk~~E~agq~i-----e~~~~q~Eve~aR~~qreae~~lss~~aEl 521 (631)
++-.|..|..++..+.-+...|.||..|..-.- ++.++-.-+.+ ++-.++.++++++---...-..+-.+.++.
T Consensus 181 ~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~Lkari 260 (372)
T COG3524 181 VRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARI 260 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHH
Confidence 344567788899999999999999998876552 22222111111 223344444544433323333344455555
Q ss_pred HHHHHHHHHHHHhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006784 522 QKMRVEMAAMKRDAEHY-SREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAER 594 (631)
Q Consensus 522 q~lr~E~a~lkrda~~~-srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~reaQ~e~er 594 (631)
+.+|.+|..-++.+--- ++++-..+=+.|. +|-.|--=.+-+++..++.+..|+++|-|
T Consensus 261 eSlrkql~qe~q~isag~~~~sl~~qaAefq--------------~l~lE~~fAekay~AAl~SlEsArieAdr 320 (372)
T COG3524 261 ESLRKQLLQEKQAISAGGSSQSLSNQAAEFQ--------------RLYLENTFAEKAYAAALTSLESARIEADR 320 (372)
T ss_pred HHHHHHHHHHHHHhcCCCCccchhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 66665555444443111 1122222222222 23333334455788889999999999874
No 218
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=43.79 E-value=4.4e+02 Score=28.81 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=40.4
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhh
Q 006784 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (631)
Q Consensus 332 sdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~ 382 (631)
.-|+-=|..|.+|+..|...|..++.++...+..|--+..+++|-.+-...
T Consensus 84 qKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 84 QKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred HHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445556788999999999999999998888888888887777776555543
No 219
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.52 E-value=2.5e+02 Score=29.95 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKR 533 (631)
Q Consensus 495 ~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkr 533 (631)
.++.|...+.+.-..++.+...+.+|+..++.|...+..
T Consensus 54 ~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 54 KLEQEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444455555555555444443
No 220
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=43.39 E-value=1.1e+02 Score=31.78 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006784 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRD 534 (631)
Q Consensus 496 ~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrd 534 (631)
+..|=|+-|+.-.++|.++....+++..|+.||..|+.|
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445668888899999999999999999999999999998
No 221
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.21 E-value=86 Score=33.22 Aligned_cols=51 Identities=24% Similarity=0.280 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006784 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (631)
Q Consensus 270 ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~EL 320 (631)
..-+|.-.++....||..|+.||.+||++|+.=-.....|..|..+|...+
T Consensus 157 eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 157 ELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 344555556677888999999999999998854445566777766666654
No 222
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=43.08 E-value=6e+02 Score=29.63 Aligned_cols=127 Identities=20% Similarity=0.303 Sum_probs=68.9
Q ss_pred hhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 361 LSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRI 440 (631)
Q Consensus 361 ~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~ 440 (631)
-+++++++|=.++-|||=...+..+ .++-|++=|+. .|+.
T Consensus 366 kLk~niEeLIedKY~viLEKnd~~k-~lqnLqe~la~---------------------------------------tqk~ 405 (527)
T PF15066_consen 366 KLKENIEELIEDKYRVILEKNDIEK-TLQNLQEALAN---------------------------------------TQKH 405 (527)
T ss_pred HHHHHHHHHHHhHhHhhhhhhhHHH-HHHHHHHHHHH---------------------------------------HHHH
Confidence 3456777777777777766555432 34555554444 4555
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccCCCchHHHHHHHHHH----HHHHHHHHHhhhhhHHHHHH
Q 006784 441 ADERTAKAGELEQKVAMLEVECATLQQEL-QDMEARLKRGQKKSPEEANQAIQMQA----WQDEVERARQGQRDAENKLS 515 (631)
Q Consensus 441 ~~E~k~Ka~eLeqqv~~lka~~esl~QEL-qDyk~KA~R~lkk~~E~agq~ie~~~----~q~Eve~aR~~qreae~~ls 515 (631)
|+|...--.-|+-+++..+++--.|+-+. ..|.+|.. ..++-++|.. -.+||++.++-.+++|.+..
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnk--------svsqclEmdk~LskKeeeverLQ~lkgelEkat~ 477 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNK--------SVSQCLEMDKTLSKKEEEVERLQQLKGELEKATT 477 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55444444455555566666555555443 22444432 2445555532 45667777777777775553
Q ss_pred H----HHHHHHHHHHHHHHHHHhh
Q 006784 516 S----LEAEVQKMRVEMAAMKRDA 535 (631)
Q Consensus 516 s----~~aElq~lr~E~a~lkrda 535 (631)
+ +..|-+.-+.|.-+|..++
T Consensus 478 SALdlLkrEKe~~EqefLslqeEf 501 (527)
T PF15066_consen 478 SALDLLKREKETREQEFLSLQEEF 501 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 4455555555544444444
No 223
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=42.99 E-value=4e+02 Score=27.58 Aligned_cols=30 Identities=10% Similarity=-0.006 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006784 450 ELEQKVAMLEVECATLQQELQDMEARLKRG 479 (631)
Q Consensus 450 eLeqqv~~lka~~esl~QELqDyk~KA~R~ 479 (631)
.++..+..++.+++.++.++..|+.-...+
T Consensus 111 ~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g 140 (331)
T PRK03598 111 QARAAVKQAQAAYDYAQNFYNRQQGLWKSR 140 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 334445566666666666666666655543
No 224
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=42.68 E-value=3.6e+02 Score=26.96 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHh-------hHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 348 LVSSIDALKKQAAL-------SEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (631)
Q Consensus 348 LkvrLdeadq~l~~-------~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Erea 408 (631)
+..+|++-.+.... ..+.|+.....++.|..|-... ++=+..|+++|..-|.....|.++
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~kl-t~~~~~l~~eL~~ke~~~~~ee~~ 131 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKL-TQDWERLRDELEQKEAEWREEEEN 131 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666555 7778888877777777665544 344677899999999999888877
No 225
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.47 E-value=7.6e+02 Score=30.63 Aligned_cols=120 Identities=20% Similarity=0.301 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcccCCCchHHHHHHHHH
Q 006784 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM---EARLKRGQKKSPEEANQAIQMQ 494 (631)
Q Consensus 418 ERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDy---k~KA~R~lkk~~E~agq~ie~~ 494 (631)
++..+||+ +.-...++..+++.++....++..|+-+++..=.+|..++..|.-. -.++.-+-+.++-|+-|.+=.-
T Consensus 678 el~~~lE~-L~~t~~~~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~a 756 (1104)
T COG4913 678 ELQARLER-LTHTQSDIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAA 756 (1104)
T ss_pred HHHHHHHH-hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 34444443 3444556666888888888888889888888888888887766542 2334444443333333322111
Q ss_pred HHHH--------HHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006784 495 AWQD--------EVERAR-QGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY 538 (631)
Q Consensus 495 ~~q~--------Eve~aR-~~qreae~~lss~~aElq~lr~E~a~lkrda~~~ 538 (631)
.|.. -|+..+ +.-+.+.--|.+..++|..|+.+|...++++...
T Consensus 757 ~f~q~a~~~h~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~ 809 (1104)
T COG4913 757 HFPQVAPEQHDDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKE 809 (1104)
T ss_pred hhhhhChHhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 123444 3344566678889999999999999999888643
No 226
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=42.14 E-value=2.6e+02 Score=25.18 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=40.1
Q ss_pred hhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhh
Q 006784 331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (631)
Q Consensus 331 EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImq 378 (631)
+-+..+|+..=+..+..+..++.....+....+.++.++|.....++.
T Consensus 62 ~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 62 KTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577888888888888888888888888888888888888888777664
No 227
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=42.00 E-value=1.1e+02 Score=32.18 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=17.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 445 TAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (631)
Q Consensus 445 k~Ka~eLeqqv~~lka~~esl~QELqDyk~K 475 (631)
+.+...++.++..+++.++.++..|.++..+
T Consensus 157 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~ 187 (370)
T PRK11578 157 QAQIGTIDAQIKRNQASLDTAKTNLDYTRIV 187 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCEEE
Confidence 3344455556666666777666666554433
No 228
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.85 E-value=99 Score=35.34 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=16.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 438 QRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (631)
Q Consensus 438 qR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDy 472 (631)
+..+.+.+.|+.+||.++..++.+++.+.+.++++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dl 102 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDD 102 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34444555555555555555544444333333333
No 229
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.89 E-value=2.3e+02 Score=24.21 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhhhhhhhhh--------hhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhh
Q 006784 311 ARIKQLEQELSVYKSEVTKV--------ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (631)
Q Consensus 311 ar~k~lQ~ELs~ar~~v~k~--------EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqd 379 (631)
.++..+-.||...-....-| ..+..+++..-+..++.+...+......+......|.+++.....++.+
T Consensus 29 ~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~~ 105 (106)
T PF01920_consen 29 RELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFGQ 105 (106)
T ss_dssp HHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred HHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445555665554442223 3667777777777778888888888888888888888877766555543
No 230
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=40.28 E-value=2e+02 Score=23.91 Aligned_cols=60 Identities=13% Similarity=0.266 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 414 MAAMEREVELEHRAAEASMALARIQRIADERTAK-AGELEQKVAMLEVECATLQQELQDMEARL 476 (631)
Q Consensus 414 ~aamERE~eLE~q~aEastALa~aqR~~~E~k~K-a~eLeqqv~~lka~~esl~QELqDyk~KA 476 (631)
++.+.++-+-|..+-+.+..| -+.|.-.+.. ..+++.++..+...++.|+.+|.+|....
T Consensus 3 i~~L~~~i~~E~ki~~Gae~m---~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 3 IEELQKKIDKELKIKEGAENM---LQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555556666666666663 3333222333 67888888888888888888888887544
No 231
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=39.70 E-value=3.6e+02 Score=29.66 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006784 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467 (631)
Q Consensus 434 La~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~Q 467 (631)
|..++..+....+....++.++..+++.++..+-
T Consensus 93 l~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a 126 (352)
T COG1566 93 LEQAEAALAAAEAQLRNLRAQLASAQALIAQAEA 126 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555554444444444
No 232
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=39.68 E-value=8.6e+02 Score=30.47 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHH---------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 462 CATLQQELQDMEARLKRGQKKSPEEANQAIQMQA---------WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 532 (631)
Q Consensus 462 ~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~---------~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lk 532 (631)
+--++.+|.+.++-.+|..+ .++.+.++++... +|..+--+|....++-++++.+++++..+...++.++
T Consensus 293 Vk~~qeeLd~lkqt~t~a~g-dseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~ 371 (1265)
T KOG0976|consen 293 VKELQEELDTLKQTRTRADG-DSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQ 371 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHH
Confidence 33455566666666666655 5666787775522 4555555666666666666666666666555544444
Q ss_pred H
Q 006784 533 R 533 (631)
Q Consensus 533 r 533 (631)
.
T Consensus 372 e 372 (1265)
T KOG0976|consen 372 E 372 (1265)
T ss_pred H
Confidence 3
No 233
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=38.94 E-value=6.6e+02 Score=28.95 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=23.6
Q ss_pred HHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 006784 369 LQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (631)
Q Consensus 369 lQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~ 403 (631)
++....+|...+...=..+|.=|++.|..-+.++.
T Consensus 123 le~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~ 157 (475)
T PRK10361 123 FEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQ 157 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44444555544444447788889999988888875
No 234
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=38.23 E-value=5.5e+02 Score=27.76 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 447 KAGELEQKVAMLEVECATLQQELQ 470 (631)
Q Consensus 447 Ka~eLeqqv~~lka~~esl~QELq 470 (631)
....++.++..+++++..++..|.
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666666666664
No 235
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=37.83 E-value=5.4e+02 Score=27.58 Aligned_cols=93 Identities=17% Similarity=0.291 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhh
Q 006784 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQG 506 (631)
Q Consensus 427 ~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~ 506 (631)
+..+...-+.+.-.+.--..|+.+|+.-+.-.----.+.++|+..|--+..+.=+ +-..|+. .
T Consensus 204 ~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEK----------E~~~~k~-------k 266 (309)
T PF09728_consen 204 VQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEK----------ENQTWKS-------K 266 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH-------H
Confidence 3333334444555556666788888888888888888899999888776664422 0112322 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006784 507 QRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (631)
Q Consensus 507 qreae~~lss~~aElq~lr~E~a~lkrda~ 536 (631)
....-..|-.+..++..+..++..++..++
T Consensus 267 ~e~~n~~l~~m~eer~~~~~~~~~~~~k~~ 296 (309)
T PF09728_consen 267 WEKSNKALIEMAEERQKLEKELEKLKKKIE 296 (309)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333555566666666666666666654
No 236
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=37.41 E-value=8.9e+02 Score=29.96 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006784 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577 (631)
Q Consensus 546 LE~RlrELTdlLy~KQTqLEaLatEKaAlqlQ 577 (631)
+..++..+...+-.-+..++.+..++..+...
T Consensus 445 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1047)
T PRK10246 445 LQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQ 476 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444443
No 237
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.30 E-value=8e+02 Score=29.43 Aligned_cols=117 Identities=23% Similarity=0.316 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006784 455 VAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRD 534 (631)
Q Consensus 455 v~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrd 534 (631)
-..++..---|+-||.+||-+-.|-+---+|=--.. =.||..|...|+.|-+.|- +..+..-++.|+.-|..+
T Consensus 144 ~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEEN---IsLQKqVs~LR~sQVEyEg----lkheikRleEe~elln~q 216 (772)
T KOG0999|consen 144 NAAVEDQRRRLRDELKEYKFREARLLSEYSELEEEN---ISLQKQVSNLRQSQVEYEG----LKHEIKRLEEETELLNSQ 216 (772)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---chHHHHHHHHhhhhhhhhH----HHHHHHHHHHHHHHHHHH
Confidence 344555555677778888887777653211111111 1266678888888877766 778888888888877777
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 006784 535 AEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 590 (631)
Q Consensus 535 a~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~reaQ~ 590 (631)
++.. .||+++.|.=.. --||.|-.|. -+-.-|.|++.+++.+..
T Consensus 217 ~ee~---------~~Lk~IAekQlE--EALeTlq~ER-eqk~alkkEL~q~~n~e~ 260 (772)
T KOG0999|consen 217 LEEA---------IRLKEIAEKQLE--EALETLQQER-EQKNALKKELSQYRNAED 260 (772)
T ss_pred HHHH---------HHHHHHHHHHHH--HHHHHHHhHH-HHHHHHHHHHHHhcchhh
Confidence 7642 355555542110 1123333332 234456667766665554
No 238
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.49 E-value=4.9e+02 Score=31.27 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006784 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (631)
Q Consensus 344 qLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~ 404 (631)
....+...+.++.......+..++.++..+..++..-..--++++...+.++...-+.++.
T Consensus 530 ~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 530 KNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555566666666667777777666665667777777766666666654
No 239
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=36.16 E-value=3.7e+02 Score=25.14 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (631)
Q Consensus 428 aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA 476 (631)
+-.+..++.+=...+........|..++..+....+.+...+..++.+.
T Consensus 34 ~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~ 82 (151)
T PF11559_consen 34 VRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQL 82 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666666666665555444
No 240
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=36.14 E-value=4.9e+02 Score=30.65 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=0.0
Q ss_pred hhHHHHhhhHHHhhhhh-------------------------hhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH-----
Q 006784 251 DQLDEAQGLLKTTISTG-------------------------QSKEARLARVCAGLSSRLQEYKSENAQLEELLV----- 300 (631)
Q Consensus 251 ~ql~e~~~lL~~~~~~~-------------------------~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr----- 300 (631)
+-++++|..||+.+.-+ +-+..++.+.+.++...|..+--||.-|.-.|.
T Consensus 169 k~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk 248 (596)
T KOG4360|consen 169 KPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKK 248 (596)
T ss_pred CChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred -----HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHH
Q 006784 301 -----AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369 (631)
Q Consensus 301 -----~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~Leel 369 (631)
-|++.+.-+.+-.++-|.++ ..++..|..++-|.-+.+.-.++-|-.|
T Consensus 249 ~k~~~~Ekeel~~~Lq~~~da~~ql---------------------~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 249 IKYLRHEKEELDEHLQAYKDAQRQL---------------------TAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 241
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=36.14 E-value=7.7e+02 Score=30.41 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhH
Q 006784 267 GQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE 346 (631)
Q Consensus 267 ~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLa 346 (631)
+++|+..|-+||+.++.+-..|+....-.|.-|-.= ..-+.-.+..+..|++.|-+.+...--. |.+.+-+=.
T Consensus 453 lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~---kq~~d~e~~rik~ev~eal~~~k~~q~k----Le~sekEN~ 525 (861)
T PF15254_consen 453 LQSKNEELLKVIENQKEENKRLRKMFQEKDQELLEN---KQQFDIETTRIKIEVEEALVNVKSLQFK----LEASEKENQ 525 (861)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHhhhh
Confidence 477888888877765544444433333222222211 1112222233333444333332222111 112233333
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhh
Q 006784 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (631)
Q Consensus 347 vLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~ 382 (631)
.|.+-|.-=|..+.-+++----||..|.+++.|-+-
T Consensus 526 iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls~ 561 (861)
T PF15254_consen 526 ILGITLRQRDAEIERLRELTRTLQNSMAKLLSDLSV 561 (861)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 455555555666666666667788888888886543
No 242
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.01 E-value=8.5e+02 Score=29.36 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=9.0
Q ss_pred HHHhhhhhhhhhhhhhhHHHHH
Q 006784 276 RVCAGLSSRLQEYKSENAQLEE 297 (631)
Q Consensus 276 rv~~qls~rLs~lr~EN~QLEe 297 (631)
.-...+..++..|.....++++
T Consensus 232 ~e~e~l~~~~~el~~~~~~~~~ 253 (908)
T COG0419 232 QEIEALEERLAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 243
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=35.84 E-value=3.6e+02 Score=24.92 Aligned_cols=100 Identities=11% Similarity=0.130 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 006784 432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAE 511 (631)
Q Consensus 432 tALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae 511 (631)
..|...++.-+..+.......+++...+..++.|.+...+|.........++- .+.++..++.=+...........
T Consensus 9 ~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~----~~~~l~~~~~fi~~L~~~I~~q~ 84 (147)
T PRK05689 9 TLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGM----TSSWWINYQQFLQQLEKAITQQR 84 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777777777788888888888888888888888876543322111 11133444444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 006784 512 NKLSSLEAEVQKMRVEMAAMKRDA 535 (631)
Q Consensus 512 ~~lss~~aElq~lr~E~a~lkrda 535 (631)
..+..++.+++..+..+-..+++.
T Consensus 85 ~~v~~~~~~ve~~r~~~~~a~~~~ 108 (147)
T PRK05689 85 QQLTQWTQKVDNARKYWQEKKQRL 108 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666544444333
No 244
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=35.49 E-value=1.6e+02 Score=25.39 Aligned_cols=21 Identities=43% Similarity=0.460 Sum_probs=10.9
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHH
Q 006784 280 GLSSRLQEYKSENAQLEELLVAERE 304 (631)
Q Consensus 280 qls~rLs~lr~EN~QLEeLLr~E~~ 304 (631)
+|=.+...|+.||. +|+++..
T Consensus 11 ~Li~~~~~L~~EN~----~Lr~q~~ 31 (65)
T TIGR02449 11 HLLEYLERLKSENR----LLRAQEK 31 (65)
T ss_pred HHHHHHHHHHHHHH----HHHHHHH
Confidence 33334445566777 5554443
No 245
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=35.31 E-value=1.7e+02 Score=25.26 Aligned_cols=47 Identities=30% Similarity=0.294 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006784 272 ARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ 318 (631)
Q Consensus 272 ~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ 318 (631)
.+|.+.=..|+.++..|..|+.+|=+-...-...+.+++.|++.|.+
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 33333344455556666666665544444555557777777776643
No 246
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=35.29 E-value=5.1e+02 Score=26.58 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006784 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (631)
Q Consensus 446 ~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~l 480 (631)
.....+..++..+++.+..++.++..|+.-..++.
T Consensus 97 ~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~ 131 (327)
T TIGR02971 97 KDVAAQQATLNRLEAELETAQREVDRYRSLFRDGA 131 (327)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34455566667777777777777777776666543
No 247
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.26 E-value=4.7e+02 Score=26.10 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHH
Q 006784 513 KLSSLEAEVQKMRVEMAAMKRDAEHYS-----REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (631)
Q Consensus 513 ~lss~~aElq~lr~E~a~lkrda~~~s-----rq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~re 587 (631)
.+..+.++++.++.++..++..+.... ..++..|-++|.+|..-+-..+.+|+.+.. .---.+++..+....
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~---~Dp~~i~~~~~~~~~ 146 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSE---NDPEKIEKLKEEIKI 146 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHH
Confidence 333344444444444444444443321 246677777788777777776766663322 111244444444455
Q ss_pred HHHHHH
Q 006784 588 VQSEAE 593 (631)
Q Consensus 588 aQ~e~e 593 (631)
+...+.
T Consensus 147 ~~~~an 152 (188)
T PF03962_consen 147 AKEAAN 152 (188)
T ss_pred HHHHHH
Confidence 554444
No 248
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=35.21 E-value=54 Score=34.29 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=23.8
Q ss_pred hhHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH
Q 006784 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV 300 (631)
Q Consensus 251 ~ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr 300 (631)
.+|.++|..||.++..++ .++...+++++.||++|.+||.
T Consensus 69 ~~l~~EN~~Lr~e~~~l~----------~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKN----------QQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777766554431 1222334457888888877775
No 249
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=34.81 E-value=5e+02 Score=26.33 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 006784 546 LEKRYRELTDLLYYK 560 (631)
Q Consensus 546 LE~RlrELTdlLy~K 560 (631)
+++-.++|+-+|+.=
T Consensus 96 ~~~~~~~l~p~m~~m 110 (251)
T PF11932_consen 96 IEETRQELVPLMEQM 110 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 250
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=34.15 E-value=6.7e+02 Score=27.58 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhHhHHHHHHhhhhH
Q 006784 351 SIDALKKQAALSEGNLASLQMNMES 375 (631)
Q Consensus 351 rLdeadq~l~~~~~~LeelQ~e~~R 375 (631)
.+..+..++......++.|+.+...
T Consensus 98 ~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 98 QKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 251
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=33.77 E-value=78 Score=26.64 Aligned_cols=27 Identities=41% Similarity=0.464 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006784 451 LEQKVAMLEVECATLQQELQDMEARLK 477 (631)
Q Consensus 451 Leqqv~~lka~~esl~QELqDyk~KA~ 477 (631)
+||++..++..+..+.|++++++.++.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888887765
No 252
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=33.33 E-value=78 Score=30.83 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=27.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006784 506 GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY 538 (631)
Q Consensus 506 ~qreae~~lss~~aElq~lr~E~a~lkrda~~~ 538 (631)
++.++|.+-..+.+|+.+|+.|...|++.++.|
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLRRELDAY 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777788889999999999999999988875
No 253
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.07 E-value=1.2e+03 Score=30.18 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006784 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (631)
Q Consensus 422 eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R 478 (631)
+||.++....--.-.++............|+..+..+...+..++.+|.|-.....+
T Consensus 416 Kleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~ 472 (1293)
T KOG0996|consen 416 KLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQ 472 (1293)
T ss_pred HHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555555555555666677777777788888888888888888888876655553
No 254
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.06 E-value=9.3e+02 Score=28.93 Aligned_cols=179 Identities=12% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHhhhHHHhhhhhhhH-HHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 006784 254 DEAQGLLKTTISTGQSK-EARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (631)
Q Consensus 254 ~e~~~lL~~~~~~~~~k-e~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~Es 332 (631)
.|--.+|..++..+-.. ..++.++.+.+.+|+..|+.+-+|-=.-|..=.+...++..+++.|.+.+..+
T Consensus 535 ~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a--------- 605 (717)
T PF10168_consen 535 QECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEA--------- 605 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNAT 412 (631)
Q Consensus 333 dlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah~at 412 (631)
..--+.|..|++..-+.+....--|-..+.++..=++.-... ++.|+..+.++..++.. |..|-+.
T Consensus 606 ---------~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~----l~~l~~si~~lk~k~~~-Q~~~i~~ 671 (717)
T PF10168_consen 606 ---------KDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQ----LQDLKASIEQLKKKLDY-QQRQIES 671 (717)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-HHHHHhc
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006784 413 KMAAMEREVELEHR-AAEASMALARIQRIADERTAKAGELEQKV 455 (631)
Q Consensus 413 r~aamERE~eLE~q-~aEastALa~aqR~~~E~k~Ka~eLeqqv 455 (631)
+-........|-.. ......+|+......++--.++..+..+|
T Consensus 672 ~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 672 QKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred cccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 255
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.41 E-value=4.7e+02 Score=30.37 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CchHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHH
Q 006784 450 ELEQKVAMLEVECATLQQELQDMEARLKRGQKK---SPEEANQAI-QMQAWQDEVERARQGQRDAENKLSS 516 (631)
Q Consensus 450 eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk---~~E~agq~i-e~~~~q~Eve~aR~~qreae~~lss 516 (631)
+.++.......++.. ++++..|+++..-+.++ .|..--+.. +++.++.++.......+.+.+.++.
T Consensus 175 ~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~ 244 (555)
T TIGR03545 175 AMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQN 244 (555)
T ss_pred HHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333332 66677777777666543 333222222 4455555554444444444433333
No 256
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=32.37 E-value=5.3e+02 Score=25.83 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 006784 433 ALARIQRIADERTAKAGELEQKV 455 (631)
Q Consensus 433 ALa~aqR~~~E~k~Ka~eLeqqv 455 (631)
.+.++|.++.+=++||.+|++++
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34447777777777777777777
No 257
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=32.26 E-value=1.2e+03 Score=29.79 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=41.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHH--HH---------HHHHHHHHHHHhhhhh
Q 006784 441 ADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI--QM---------QAWQDEVERARQGQRD 509 (631)
Q Consensus 441 ~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~i--e~---------~~~q~Eve~aR~~qre 509 (631)
+...+.+...+.++-..++..++.+.|-+...+....=. ++++ --|..+ |. +.+..+++-+|..+.+
T Consensus 274 L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l-~~S~-~Lg~~L~~Q~~~LP~~~~~~~l~~~IAdlRl~~f~ 351 (1109)
T PRK10929 274 LNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWL-GVSN-ALGEALRAQVARLPEMPKPQQLDTEMAQLRVQRLR 351 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCH-HHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHH
Confidence 344455566666666667777777777776666555422 2222 233333 11 3466667777777777
Q ss_pred HHHHHHH
Q 006784 510 AENKLSS 516 (631)
Q Consensus 510 ae~~lss 516 (631)
.+..+..
T Consensus 352 ~~q~~~~ 358 (1109)
T PRK10929 352 YEDLLNK 358 (1109)
T ss_pred HHHHHHH
Confidence 6664444
No 258
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=32.17 E-value=1e+03 Score=29.09 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=66.5
Q ss_pred HHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQ 438 (631)
Q Consensus 359 l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aq 438 (631)
......+|+.+..++.-+.-.-. .-++.++.++.+|.++|..|+.=+.-=..++-+... +|.|+.-+....-.++
T Consensus 591 ~~el~eelE~le~eK~~Le~~L~-~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~----~E~ql~~~~e~~e~le 665 (769)
T PF05911_consen 591 KKELEEELEKLESEKEELEMELA-SCQDQLESLKNQLKESEQKLEELQSELESAKESNSL----AETQLKAMKESYESLE 665 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 44455566666655544432221 236778899999999998885544443455555555 4444444433333344
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006784 439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (631)
Q Consensus 439 R~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~ 477 (631)
-.+.+-...+..+..++.+++.+++.-++-..|+.+|..
T Consensus 666 ~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~ 704 (769)
T PF05911_consen 666 TRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCR 704 (769)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence 445555566666777777777777666666666655544
No 259
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=32.06 E-value=1.1e+03 Score=29.56 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006784 451 LEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 530 (631)
Q Consensus 451 Leqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~ 530 (631)
++-.+..++.+...+++.|-+.+-||. |..--+ ..|+.+-+.|-.-.|-....+...+.++|.|..+++.
T Consensus 321 lh~enmkltrqkadirc~LlEarrk~e--------gfddk~--~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~ae 390 (1265)
T KOG0976|consen 321 LHLENMKLTRQKADIRCALLEARRKAE--------GFDDKL--NELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAE 390 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--------chhHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556688888888888888777764 222111 1122222233333334444444455566666666665
Q ss_pred HHHhhhh
Q 006784 531 MKRDAEH 537 (631)
Q Consensus 531 lkrda~~ 537 (631)
+..+++-
T Consensus 391 rqeQide 397 (1265)
T KOG0976|consen 391 RQEQIDE 397 (1265)
T ss_pred HHHHHHH
Confidence 5555553
No 260
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=31.79 E-value=1.1e+03 Score=29.23 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhhhccccCccccccc
Q 006784 584 RLQEVQSEAERSRVSRRSWSSWEEDAE 610 (631)
Q Consensus 584 q~reaQ~e~ersr~~rr~~~~~~~d~~ 610 (631)
+...++.-+..+...|+...+++.|.+
T Consensus 320 r~qq~~vl~~~~q~f~S~~~~ad~d~~ 346 (916)
T KOG0249|consen 320 RDQQAQVLANVLQAFESDLTGSDSDRE 346 (916)
T ss_pred HHHHHHhccchhhhhhcCCcccccchh
Confidence 334445555557777777888888655
No 261
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=31.50 E-value=1.9e+02 Score=24.65 Aligned_cols=46 Identities=26% Similarity=0.393 Sum_probs=33.5
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 006784 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSE 326 (631)
Q Consensus 281 ls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~ 326 (631)
++.+|...|.-|-.++.-|.--......|.+.++.|..++..+|++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4556667788888888888766666778888888888888776653
No 262
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.94 E-value=1e+03 Score=28.67 Aligned_cols=148 Identities=22% Similarity=0.258 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHH
Q 006784 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVER 502 (631)
Q Consensus 423 LE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~ 502 (631)
+|+.-++..+.|...|.+++--.--+.+..++|..+-..+..+++ |++-+-+- ...|..+..-+-.. +|+.
T Consensus 330 mErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~r-lq~~~d~k-gEk~rdg~~kad~~-------e~~l 400 (772)
T KOG0999|consen 330 MEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRR-LQDSKDKK-GEKGRDGGEKADLY-------EVDL 400 (772)
T ss_pred HHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH-hHHhhhhh-ccccccccccchhH-------Hhhh
Confidence 556678888888888888888888888888888888888888875 34433222 11111111111011 1111
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHH
Q 006784 503 ARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (631)
Q Consensus 503 aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~ 582 (631)
--.. -......-...++-.++.+|.+++..+-| .-....+|+-..+|++-|- +.||+++ -.|++++
T Consensus 401 ~a~e--~~a~k~~~a~~e~i~lk~ql~~l~~~~n~--tde~~~~e~evq~l~~kl~---------llekasl-a~l~~ev 466 (772)
T KOG0999|consen 401 NALE--ILACKYAVAVDEMIQLKDQLKALYHQLNY--TDEKVQYEKEVQELVEKLR---------LLEKASL-AELEKEV 466 (772)
T ss_pred hhHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cchhhhHHHHHHHHHHHHH---------HHHHhhH-HHhHHHH
Confidence 0000 12223333556666666666666666433 2244566666666655442 3455551 1256666
Q ss_pred HHHHHHHHHHH
Q 006784 583 NRLQEVQSEAE 593 (631)
Q Consensus 583 ~q~reaQ~e~e 593 (631)
+.+.+.-.+..
T Consensus 467 q~~t~ia~~~~ 477 (772)
T KOG0999|consen 467 QKATEIAEEGT 477 (772)
T ss_pred HHHHHHHhccc
Confidence 66655443433
No 263
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=30.65 E-value=5.1e+02 Score=25.15 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=19.1
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhH
Q 006784 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (631)
Q Consensus 342 dSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~R 375 (631)
+..-+.|...+..+...+..++..++.|..|++.
T Consensus 60 ~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~ 93 (135)
T TIGR03495 60 EEAQAQLRQQLAQARALLAQREQRIERLKRENED 93 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 3444555555555566666666666666555543
No 264
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=30.45 E-value=6.1e+02 Score=25.95 Aligned_cols=6 Identities=33% Similarity=0.529 Sum_probs=2.4
Q ss_pred HHHHhh
Q 006784 253 LDEAQG 258 (631)
Q Consensus 253 l~e~~~ 258 (631)
|+.++.
T Consensus 82 l~~a~a 87 (334)
T TIGR00998 82 LAKAEA 87 (334)
T ss_pred HHHHHH
Confidence 444433
No 265
>PRK09343 prefoldin subunit beta; Provisional
Probab=29.96 E-value=4.5e+02 Score=24.36 Aligned_cols=90 Identities=21% Similarity=0.234 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----------hHHHHHHHHHHHHHHH
Q 006784 489 QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSRE-----------EHMELEKRYRELTDLL 557 (631)
Q Consensus 489 q~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq-----------~~~ELE~RlrELTdlL 557 (631)
.+.+++.++.++.........++. ...+.+....|+..|..|...|... ...+|++|+.-+.
T Consensus 12 ~~~~~q~lq~~l~~~~~q~~~le~----q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie--- 84 (121)
T PRK09343 12 QLAQLQQLQQQLERLLQQKSQIDL----ELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE--- 84 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH---
Confidence 344556666666555444444433 3445556667888888888888542 3356666665555
Q ss_pred HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH
Q 006784 558 YYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (631)
Q Consensus 558 y~KQTqLEaLatEKaAlqlQLER~~~q~reaQ 589 (631)
+.+..|-.-+..++-+++....+++++.
T Consensus 85 ----~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 85 ----LRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555543
No 266
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=29.62 E-value=3.1e+02 Score=26.17 Aligned_cols=66 Identities=26% Similarity=0.265 Sum_probs=0.0
Q ss_pred hhHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhh-hhhhhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 006784 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRL-QEYKSENAQLEELLVAERELSRSYEARIKQL 316 (631)
Q Consensus 251 ~ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rL-s~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~l 316 (631)
..|..+.......+..++.....|...+..++... ...++|..-|=-||.-...++..|..|++.|
T Consensus 44 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 44 KELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
No 267
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=29.38 E-value=7.9e+02 Score=28.29 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=42.2
Q ss_pred hhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH----hHHHHHHHHHHHHHHhhhhhhh
Q 006784 265 STGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAEREL----SRSYEARIKQLEQELSVYKSEV 327 (631)
Q Consensus 265 ~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~----~~Sl~ar~k~lQ~ELs~ar~~v 327 (631)
+....|-..|-+-.+|..+..+.+..++. .|+.|-.. +.-.+..+..||+|+...+.+.
T Consensus 9 s~~dqr~~~~~~~laq~~k~~s~~~aq~~----~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 9 SENDQRLIDLNTELAQCEKAQSRLSAQLV----ILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666777888888888889999988 77766554 5566667888888876554433
No 268
>PF15294 Leu_zip: Leucine zipper
Probab=28.71 E-value=7.8e+02 Score=26.64 Aligned_cols=48 Identities=27% Similarity=0.450 Sum_probs=30.1
Q ss_pred HHHHHHhh-----hhhhhhhhhhhhHHHHHHHH-HHHHH------hHHHHHHHHHHHHHH
Q 006784 273 RLARVCAG-----LSSRLQEYKSENAQLEELLV-AEREL------SRSYEARIKQLEQEL 320 (631)
Q Consensus 273 rL~rv~~q-----ls~rLs~lr~EN~QLEeLLr-~E~~~------~~Sl~ar~k~lQ~EL 320 (631)
+|.-+..+ |.++...|+.||..|-.=|. -|... .+.+...+++||...
T Consensus 117 KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~ 176 (278)
T PF15294_consen 117 KLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQ 176 (278)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566 88999999999997766444 23222 444555566666533
No 269
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.52 E-value=1.3e+03 Score=29.05 Aligned_cols=227 Identities=19% Similarity=0.302 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhh--------h-hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHh
Q 006784 306 SRSYEARIKQLEQELSVYKSEVTKV--------E-SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (631)
Q Consensus 306 ~~Sl~ar~k~lQ~ELs~ar~~v~k~--------E-sdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RI 376 (631)
-.+|+.|+.++.+.|..+..-..-. + .-++..|-+.--+.+.|+..|.-|++........+=+| .+=+
T Consensus 888 dE~L~dRveE~~E~L~~a~e~~~fI~qhG~tls~LEpia~~LqsDPe~~e~L~~~y~qA~~~q~q~~qq~FAL---~dv~ 964 (1480)
T COG3096 888 DESLADRVEEIRERLDEAQEAARFIQQHGNTLSKLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQQAFAL---TEVV 964 (1480)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHhhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3578888888888887663211000 0 23344455555677888888877776644444433333 1112
Q ss_pred hhhhhhh----------hhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 377 MRNRELT----------ETRMIQALREELASVERRAE--EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADER 444 (631)
Q Consensus 377 mqdh~~~----------e~qalqaLREeLa~AE~rL~--~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~ 444 (631)
.+-+.-+ .+..-+-||.+|.++++.-. +|+-.... .|+..-...|+.++-+++-
T Consensus 965 qRr~HF~Y~ds~~~l~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q-------------~Q~sqYnqvl~~LksS~~~- 1030 (1480)
T COG3096 965 QRRAHFSYSDSAEMLSENSDLNEKLRQRLEQAEAERTRAREQLRQHQ-------------AQLSQYNQVLASLKSSYDT- 1030 (1480)
T ss_pred HhhcccccchhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhhhhH-
Confidence 1211111 13444567888877664332 22222111 1233333344444444432
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 006784 445 TAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKM 524 (631)
Q Consensus 445 k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~l 524 (631)
-..-+.-+.|||+|.+++|-.| .+..+-+--..|...+.+.|...-..|-.|..++.|++.|
T Consensus 1031 -------------K~~~l~El~qEl~d~GV~AD~g-----AeeRA~~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L 1092 (1480)
T COG3096 1031 -------------KKELLNELQQELQDIGVRADSG-----AEERARIRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNL 1092 (1480)
T ss_pred -------------HHHHHHHHHHHHHHhCCCcCcc-----hHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHH
Confidence 2234566889999998887632 2233334445677777777777777777888888888888
Q ss_pred HHHHHHHHHhhhhhhh---------------hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006784 525 RVEMAAMKRDAEHYSR---------------EEHMELEKRYRELTDLLYYKQTQLETMA 568 (631)
Q Consensus 525 r~E~a~lkrda~~~sr---------------q~~~ELE~RlrELTdlLy~KQTqLEaLa 568 (631)
-.-|..+-+|-...-- .-....|+|||- -++-|.-=..|-.|+
T Consensus 1093 ~~~~rK~ErDY~~~Re~VV~AK~~WC~VmRl~r~n~vErRL~r-RElAYlsaDELRSMS 1150 (1480)
T COG3096 1093 TRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHR-RELAYLSADELRSMS 1150 (1480)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhcchhhhhhhhhcccHHHHHHH-HHhhhcCHHHHhhhh
Confidence 7777777777644211 123567888874 456677666666665
No 270
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.34 E-value=4.2e+02 Score=23.44 Aligned_cols=45 Identities=29% Similarity=0.401 Sum_probs=28.2
Q ss_pred hhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhH
Q 006784 331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (631)
Q Consensus 331 EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~R 375 (631)
|-++.+|..-=+..+..|..+++.....+......+..++..+..
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888865555666666666666666666666666666555544
No 271
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=28.32 E-value=1.3e+02 Score=24.29 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=35.1
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhh
Q 006784 335 AEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (631)
Q Consensus 335 teAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~ 374 (631)
.+.|..||++|+.+-.=||--.++.......++.|+.+..
T Consensus 2 ~~Ql~~kd~qI~~l~kLLDQQQ~L~L~~~k~le~L~~el~ 41 (45)
T PF04394_consen 2 DEQLEEKDKQIEELQKLLDQQQQLALQDNKKLEELKAELE 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999999999999977654
No 272
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=27.43 E-value=6.7e+02 Score=25.46 Aligned_cols=159 Identities=17% Similarity=0.287 Sum_probs=0.0
Q ss_pred chhhhHHHHhhhHHHhhhhh-hhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhhhhh
Q 006784 248 KEQDQLDEAQGLLKTTISTG-QSKEARLARVCAGLSSRLQEYKSENAQLEELLVAEREL-SRSYEARIKQLEQELSVYKS 325 (631)
Q Consensus 248 k~q~ql~e~~~lL~~~~~~~-~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~-~~Sl~ar~k~lQ~ELs~ar~ 325 (631)
++|..++..-.-+...+... ..+...+...|..|-.++..|....++--.-+....+- +.+|...+..|+..+..-|.
T Consensus 63 ~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~ 142 (247)
T PF06705_consen 63 KLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERN 142 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006784 326 EVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE 405 (631)
Q Consensus 326 ~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~E 405 (631)
....-|..+..-|.---..|. ...+..-..++..+.++..+.+.++.....+..+.-..+.++++.-...|..|
T Consensus 143 ~R~erE~~i~krl~e~~~~l~------~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e 216 (247)
T PF06705_consen 143 EREEREENILKRLEEEENRLQ------EKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALE 216 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 006784 406 RAAHNAT 412 (631)
Q Consensus 406 reah~at 412 (631)
..++..+
T Consensus 217 ~~~R~~~ 223 (247)
T PF06705_consen 217 SQEREQS 223 (247)
T ss_pred HHHHHhh
No 273
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=27.38 E-value=3.7e+02 Score=22.45 Aligned_cols=62 Identities=16% Similarity=0.289 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTA--KAGELEQKVAMLEVECATLQQELQDMEA 474 (631)
Q Consensus 410 ~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~--Ka~eLeqqv~~lka~~esl~QELqDyk~ 474 (631)
...+++...++-.-|.+..+.+.- |-+-|...+. -..++++++.-....++.|+.+|..|..
T Consensus 7 ~~~~l~~L~~~l~~E~~~r~Gaen---m~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 7 LQSRLERLEKELSIELKVKEGAEN---LLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777666666 4445554443 4788899999999999999999998864
No 274
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.27 E-value=5.1e+02 Score=25.80 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=8.0
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 006784 313 IKQLEQELSVYKSEVTKV 330 (631)
Q Consensus 313 ~k~lQ~ELs~ar~~v~k~ 330 (631)
+..+.+++..++..+.+|
T Consensus 137 i~~~~~~~~~~~~~anrw 154 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRW 154 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 275
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.05 E-value=1e+03 Score=27.56 Aligned_cols=171 Identities=23% Similarity=0.249 Sum_probs=91.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHH-HHhhHh
Q 006784 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQ-AALSEG 364 (631)
Q Consensus 286 s~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~-l~~~~~ 364 (631)
..++-+|+ .|..+-+-..-|...+-.-|-|....++=.+-.|..-.||++|-.-|-..=.-+|++...- .-..+.
T Consensus 24 e~~~rq~a----~~qa~q~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~ 99 (542)
T KOG0993|consen 24 EDLKRQNA----VLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYEC 99 (542)
T ss_pred hHHHhccc----hhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHH
Confidence 34556677 5555555566666666555555555544333337888888887655543333333332221 111111
Q ss_pred HHHH-HHhhhhHhhhhhhhhhhHHHHHHHHHHHH--HHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 365 NLAS-LQMNMESIMRNRELTETRMIQALREELAS--VERRAEEERAA-H-NATKMAAMEREVELEHRAAEASMALARIQR 439 (631)
Q Consensus 365 ~Lee-lQ~e~~RImqdh~~~e~qalqaLREeLa~--AE~rL~~Erea-h-~atr~aamERE~eLE~q~aEastALa~aqR 439 (631)
.+-. |+-+.-.+.+|.... .+-|-+|++.|.. -+--|+.|.+. | -+-||..+. .-+|.+++++...|+.++-
T Consensus 100 q~~~~leqertq~qq~~e~~-erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv--~pmekeI~elk~kl~~aE~ 176 (542)
T KOG0993|consen 100 QMCQNLEQERTQLQQNEEKL-EREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELV--TPMEKEINELKKKLAKAEQ 176 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHH--hhHHHHHHHHHHHHHhHHH
Confidence 1111 223333333333322 3345566666665 33445555544 2 333443333 3367889999999988888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006784 440 IADERTAKAGELEQKVAMLEVECATLQ 466 (631)
Q Consensus 440 ~~~E~k~Ka~eLeqqv~~lka~~esl~ 466 (631)
.++|=. ....+++.++...|+.|+
T Consensus 177 ~i~El~---k~~~h~a~slh~~t~lL~ 200 (542)
T KOG0993|consen 177 RIDELS---KAKHHKAESLHVFTDLLN 200 (542)
T ss_pred HHHHHH---hhhcccchHHHHHHHHHH
Confidence 887766 233444557777777765
No 276
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.00 E-value=1.1e+03 Score=27.66 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------------h---hhH--HHHH
Q 006784 489 QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS----------------R---EEH--MELE 547 (631)
Q Consensus 489 q~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~s----------------r---q~~--~ELE 547 (631)
....+|.| -|+.-|.++.-+...+|.++-+|...+.-++... + .+| .++-
T Consensus 333 aP~aLQ~w---------Lq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak 403 (575)
T KOG4403|consen 333 APLALQKW---------LQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAK 403 (575)
T ss_pred CcHHHHHH---------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHH
Confidence 34456676 3445555555566666666555555555444432 1 244 5666
Q ss_pred HHHHHHHHHHHHHH---HHHHHh
Q 006784 548 KRYRELTDLLYYKQ---TQLETM 567 (631)
Q Consensus 548 ~RlrELTdlLy~KQ---TqLEaL 567 (631)
++|-+||-.|-..+ -|+|.|
T Consensus 404 ~al~evtt~lrErl~RWqQIE~l 426 (575)
T KOG4403|consen 404 SALSEVTTLLRERLHRWQQIESL 426 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889988886655 356655
No 277
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=26.59 E-value=4.1e+02 Score=22.70 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=18.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 445 TAKAGELEQKVAMLEVECATLQQELQDMEA 474 (631)
Q Consensus 445 k~Ka~eLeqqv~~lka~~esl~QELqDyk~ 474 (631)
-.++..+.+++..+......+..++..++.
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~ 33 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELEL 33 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666665544
No 278
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=26.51 E-value=22 Score=39.94 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhh
Q 006784 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (631)
Q Consensus 341 KdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~ 381 (631)
-++-|+-|+..|.+.++...-...++..+ +..||+|-.
T Consensus 493 t~~~~~pl~~~L~ele~~I~~~~~~i~~~---ka~Il~Ne~ 530 (539)
T PF10243_consen 493 TDEALEPLKAQLAELEQQIKDQQDKICAV---KANILKNEE 530 (539)
T ss_dssp -----------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHH
Confidence 35556666666666666666666665555 556666543
No 279
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.05 E-value=78 Score=26.65 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 006784 306 SRSYEARIKQLEQELSVYKSEVTKVESNL 334 (631)
Q Consensus 306 ~~Sl~ar~k~lQ~ELs~ar~~v~k~Esdl 334 (631)
..++++|++.|.+.|..+..+..+.|...
T Consensus 27 ~ltiEqRLa~LE~rL~~ae~ra~~ae~~~ 55 (60)
T PF11471_consen 27 PLTIEQRLAALEQRLQAAEQRAQAAEARA 55 (60)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688998888888888876666665443
No 280
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=26.02 E-value=6.8e+02 Score=25.10 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006784 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (631)
Q Consensus 428 aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QEL 469 (631)
...-..+..+...++.-+.++.+|+.++..++..-..|.-..
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444455555555555555555444443333
No 281
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=25.79 E-value=9.3e+02 Score=26.58 Aligned_cols=104 Identities=21% Similarity=0.189 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHH----hhhh
Q 006784 434 LARIQRIADERTAKAGELEQKVAMLEVE-CATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERAR----QGQR 508 (631)
Q Consensus 434 La~aqR~~~E~k~Ka~eLeqqv~~lka~-~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR----~~qr 508 (631)
|+.+++.+..-......++-.+..+++. +.-++.++.-|..-+.++...-.+-...-..++.-+..+..++ +...
T Consensus 100 la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~~~~~~~~~ 179 (352)
T COG1566 100 LAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQAAQKQNLA 179 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3334444444444455555555666663 6666666666666665544321111111112233333332222 2222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006784 509 DAENKLSSLEAEVQKMRVEMAAMKRDAEH 537 (631)
Q Consensus 509 eae~~lss~~aElq~lr~E~a~lkrda~~ 537 (631)
.++........++..++..+..-+.|+++
T Consensus 180 ~l~~~~~~~~~~v~~a~a~~~~A~l~L~~ 208 (352)
T COG1566 180 LLESEVSGAQAQVASAEAALDQAKLDLER 208 (352)
T ss_pred HHhhhhccchhHHHHHHHHHHHHHHHhhC
Confidence 33333444555556665555555555554
No 282
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.47 E-value=7.7e+02 Score=29.70 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 006784 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (631)
Q Consensus 350 vrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL 402 (631)
..+.++.++....+..++.+...+.++++.-..--++++...+.+....-+.+
T Consensus 541 ~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 541 ALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555555444444455555554444444444
No 283
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=24.93 E-value=8.2e+02 Score=25.68 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=27.9
Q ss_pred HHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhH
Q 006784 254 DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENA 293 (631)
Q Consensus 254 ~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~ 293 (631)
+.-..+=|+-++--+++.++..+- .+..+|+..|..||+
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~-~e~~~r~~~leken~ 232 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKE-DEMAHRVAELEKENE 232 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHH-HHHHHHHHHHHHHHH
Confidence 333444556666667777776655 888899999999998
No 284
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.77 E-value=6.2e+02 Score=24.16 Aligned_cols=42 Identities=24% Similarity=0.504 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 006784 512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYREL 553 (631)
Q Consensus 512 ~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrEL 553 (631)
..+..+..++..|+.-+..|+......+-.+-..+++.|+.+
T Consensus 116 ~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~ 157 (169)
T PF07106_consen 116 EEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKW 157 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 344445555555555555555544333333444444444433
No 285
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=24.77 E-value=5.7e+02 Score=26.39 Aligned_cols=110 Identities=25% Similarity=0.281 Sum_probs=80.1
Q ss_pred hhHHHhhhhcCCCCcchhhhHHHHhhhHHHhhhhhhhHH----HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 006784 233 NKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKE----ARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRS 308 (631)
Q Consensus 233 n~k~qq~~kaD~~p~k~q~ql~e~~~lL~~~~~~~~~ke----~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~S 308 (631)
|.++.+ -+-+.-+|+-|||.+ +|.|+ +-.||++|+ +++-+.++ +-+|+-|..+|+-|++-++.=.+.|++
T Consensus 31 ~lq~e~--lgktavqk~Ld~La~-~Gki~-~K~YGKqKIY~a~QDqF~~~~--~eel~~ld~~i~~l~ek~q~l~~t~s~ 104 (201)
T KOG4603|consen 31 NLQREH--LGKTAVQKTLDQLAQ-QGKIK-EKMYGKQKIYFADQDQFDMVS--DEELQVLDGKIVALTEKVQSLQQTCSY 104 (201)
T ss_pred HHHHHh--ccchHHHHHHHHHHH-cCchh-HHhccceeeEeecHHhhcCCC--hHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 555544 455666777788876 45554 456888875 34444333 468899999999999988888888999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHh
Q 006784 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371 (631)
Q Consensus 309 l~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~ 371 (631)
+++.|+.|+.-| -++.+...+++.+..++-..+.|..+.+
T Consensus 105 veaEik~L~s~L-----------------------t~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 105 VEAEIKELSSAL-----------------------TTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHhc-----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998777 3556677777778888777777777743
No 286
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.65 E-value=2.4e+02 Score=24.29 Aligned_cols=51 Identities=25% Similarity=0.317 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhh
Q 006784 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS 362 (631)
Q Consensus 308 Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~ 362 (631)
++++|+.+|+.-++-- +..=+.|.++++....+|..|...+.....++...
T Consensus 5 ~~e~Ri~~LE~~lafQ----e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 5 SLEARLAELESRLAFQ----EITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777776666333 22226788888888888877776666655555443
No 287
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.62 E-value=2.5e+02 Score=33.47 Aligned_cols=55 Identities=29% Similarity=0.375 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHH
Q 006784 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (631)
Q Consensus 513 ~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~ 582 (631)
+|.+++..+|+|..||+.+..-+ .+|--++-+||+.|++|--|--..|-|++...
T Consensus 94 EL~ele~krqel~seI~~~n~ki---------------Eelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKI---------------EELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH---------------HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 44455666666666666555443 45667788999999998877766666665443
No 288
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=23.71 E-value=9.6e+02 Score=26.12 Aligned_cols=140 Identities=15% Similarity=0.224 Sum_probs=79.5
Q ss_pred hHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHhhhhhh
Q 006784 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIK-----QLEQELSVYKSE 326 (631)
Q Consensus 252 ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k-----~lQ~ELs~ar~~ 326 (631)
.|..+|+.....+..++..-+.---.++.+.-.|+||.-|.. -|..|...|..+...-. ...+=++.+-..
T Consensus 2 ~Lk~~nR~~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~----hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~ 77 (355)
T PF09766_consen 2 ALKQLNRAAQFRIKKAKDETAEAKQEVDALHLQLQNLLYEKS----HLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEE 77 (355)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHH----HHHHHHHHHhccCCCCCCCcCccHHHHHHhChhh
Confidence 367788888888888887777777888999999999999999 67777777766655410 011111111111
Q ss_pred hhhhhhhHHHHHhcccch----hHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 006784 327 VTKVESNLAEALAAKNSE----IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (631)
Q Consensus 327 v~k~EsdlteAlaAKdSq----LavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL 402 (631)
+.+-+ ...+.. |+-|.-.|.+ -+.+...+.+|+..+..+.++. .....-|..|...|..-..+.
T Consensus 78 ~~~~~-------~~~~~~H~lml~RL~~EL~~----Rk~L~~~~~el~~~k~~l~~~~-~~k~~~L~~l~~~L~~l~~a~ 145 (355)
T PF09766_consen 78 ISDPE-------LTEDDEHQLMLARLEFELEQ----RKRLEEQLKELEQRKKKLQQEN-KKKKKFLDSLPPQLKSLKKAA 145 (355)
T ss_pred ccccc-------cCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHH
Confidence 11000 001111 3333333322 2334455666666666666663 333445566666666666555
Q ss_pred HHHHH
Q 006784 403 EEERA 407 (631)
Q Consensus 403 ~~Ere 407 (631)
+-=|+
T Consensus 146 ~plq~ 150 (355)
T PF09766_consen 146 KPLQE 150 (355)
T ss_pred HHHHH
Confidence 44333
No 289
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=23.57 E-value=3.2e+02 Score=26.56 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 006784 540 REEHMELEKRYRELTDLLY 558 (631)
Q Consensus 540 rq~~~ELE~RlrELTdlLy 558 (631)
+.....||.|+++|...|-
T Consensus 53 k~~q~~~e~RI~~L~~~L~ 71 (158)
T PRK05892 53 ADELARLDDRINELDRRLR 71 (158)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577889999999987764
No 290
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.46 E-value=6.7e+02 Score=24.09 Aligned_cols=80 Identities=14% Similarity=0.287 Sum_probs=57.4
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhh
Q 006784 304 ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (631)
Q Consensus 304 ~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~ 383 (631)
..|+++-..+.++-+.|+.+|.... +.|.-|-.+||+.....+.....+.+++.+.++|-.|-..-
T Consensus 43 ~A~~~v~kql~~vs~~l~~tKkhLs--------------qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 43 DAVASVSKQLEQVSESLSSTKKHLS--------------QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3467777777777777766665543 56778888888888888888888888888888886654433
Q ss_pred hhHHHHHHHHHHHHH
Q 006784 384 ETRMIQALREELASV 398 (631)
Q Consensus 384 e~qalqaLREeLa~A 398 (631)
.+||..|..++..-
T Consensus 109 -~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 109 -QQMVEGLEGKIDEI 122 (126)
T ss_pred -HHHHHHHHHHHHHH
Confidence 46677776666543
No 291
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.33 E-value=1.2e+03 Score=27.12 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=11.7
Q ss_pred CCCCCcccCCCCCccc
Q 006784 150 ATPNGEILNENDSDVH 165 (631)
Q Consensus 150 ~~~nge~~ne~~sd~~ 165 (631)
-+=||-.-|.-++|+|
T Consensus 133 ~efNGk~Fn~le~e~C 148 (493)
T KOG0804|consen 133 EEFNGKQFNSLEPEVC 148 (493)
T ss_pred HHcCCCcCCCCCccce
Confidence 5668888887777765
No 292
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.16 E-value=6.6e+02 Score=23.95 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=10.9
Q ss_pred hhhhhhHHHHHHHHHhhhhhhhhhhhh
Q 006784 264 ISTGQSKEARLARVCAGLSSRLQEYKS 290 (631)
Q Consensus 264 ~~~~~~ke~rL~rv~~qls~rLs~lr~ 290 (631)
|..++.+...|...|..|+.+|.+|++
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333444444444444444433
No 293
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=23.11 E-value=1.2e+03 Score=26.82 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 384 ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEA 430 (631)
Q Consensus 384 e~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEa 430 (631)
.+-.+..|-+..-..|--+..|+.--.-.+.+.+-+-+..|+|+++-
T Consensus 154 c~al~~~L~~k~Ktle~E~~kek~vctkdKE~ll~~kr~~e~Q~~~C 200 (442)
T PF06637_consen 154 CNALLLMLNQKAKTLEVELAKEKAVCTKDKEGLLLSKRQVEEQLEEC 200 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhHHHHHHHH
Confidence 33444444444444443333443333444444444444445554443
No 294
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.87 E-value=7e+02 Score=24.13 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcccCCCc-hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 006784 466 QQELQDMEARLKRGQKKSP-EEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHM 544 (631)
Q Consensus 466 ~QELqDyk~KA~R~lkk~~-E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ 544 (631)
=+.|.++|..-.+-...++ ..+. +..++...|...+..|.-+..+++|+..=..||..||..++...+ .-.
T Consensus 54 L~~Ls~LK~~y~~~~~~~~~~~~~-------l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~-~n~ 125 (131)
T PF04859_consen 54 LRRLSELKRRYRKKQSDPSPQVAR-------LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNR-ANK 125 (131)
T ss_pred HHHHHHHHHHHHcCCCCCCccccc-------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3568888888887765544 1111 222334444445566777788888888888899999998875433 334
Q ss_pred HHHHHH
Q 006784 545 ELEKRY 550 (631)
Q Consensus 545 ELE~Rl 550 (631)
-||+||
T Consensus 126 ~Lekrl 131 (131)
T PF04859_consen 126 SLEKRL 131 (131)
T ss_pred HhhccC
Confidence 555553
No 295
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=22.72 E-value=9.2e+02 Score=25.46 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006784 450 ELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529 (631)
Q Consensus 450 eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a 529 (631)
+++.++..+++.++.+++++.-|+.-...+.- + . .+++.++.....++..+..+++++..++..++
T Consensus 110 ~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~i--s-----~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 175 (370)
T PRK11578 110 ELRAQRQQAEAELKLARVTLSRQQRLAKTQAV--S-----Q-------QDLDTAATELAVKQAQIGTIDAQIKRNQASLD 175 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--C-----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666666666655544432221 1 0 12222222222223344445555555555555
Q ss_pred HHHHhhhh
Q 006784 530 AMKRDAEH 537 (631)
Q Consensus 530 ~lkrda~~ 537 (631)
.++.++.+
T Consensus 176 ~~~~~l~~ 183 (370)
T PRK11578 176 TAKTNLDY 183 (370)
T ss_pred HHHHHHhc
Confidence 55555544
No 296
>PRK00295 hypothetical protein; Provisional
Probab=22.50 E-value=2.8e+02 Score=23.58 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhh
Q 006784 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS 362 (631)
Q Consensus 308 Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~ 362 (631)
|+++|+.+|+.-++-. +..=+.|.++++...-+|..|...+.....++...
T Consensus 2 ~~e~Ri~~LE~kla~q----E~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 2 SLEERVTELESRQAFQ----DDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666555322 11126777888888888877776666655555443
No 297
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=22.17 E-value=1.5e+02 Score=32.38 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 006784 506 GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT 554 (631)
Q Consensus 506 ~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELT 554 (631)
..-..+..|+.++..+..|..+|.-||.|+- .....-..||+|+..|.
T Consensus 106 ~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVS-t~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 106 TLSDHSSSISDLQSSVSALSTDVSNLKSDVS-TQALNITDLESRVKALE 153 (326)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh-hhcchHhhHHHHHHHHh
Confidence 3335566888899999999999999999993 34467799999998874
No 298
>PLN02939 transferase, transferring glycosyl groups
Probab=21.97 E-value=1.7e+03 Score=28.19 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=41.7
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006784 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEER 406 (631)
Q Consensus 342 dSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Er 406 (631)
+-||+.|..-+.-+.+-...++.+-.-.=.+.++|+.+.+.-|+. |..|.-+|++++++++---
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 190 (977)
T PLN02939 127 DFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGK-INILEMRLSETDARIKLAA 190 (977)
T ss_pred cccHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHhhhhhhhhhhhh
Confidence 567788888787777765444433333334456787777665543 6788889999888775433
No 299
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.91 E-value=5.9e+02 Score=22.92 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 006784 487 ANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSR 540 (631)
Q Consensus 487 agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~sr 540 (631)
.....+++.+|.++.........++. ...|...-..|+..+..|...|..
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~----~~~E~~~v~~eL~~l~~d~~vyk~ 55 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEA----QLKEAEKALEELERLPDDTPVYKS 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCcchhHHH
Confidence 33444666777777665555555444 334445555677777778777753
No 300
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.82 E-value=9.5e+02 Score=25.27 Aligned_cols=111 Identities=14% Similarity=0.292 Sum_probs=65.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhccc--CCCchHHHHHHHHHHHHHHHH--------HHHh
Q 006784 445 TAKAGELEQKVAMLEVECATLQQELQD---------MEARLKRGQ--KKSPEEANQAIQMQAWQDEVE--------RARQ 505 (631)
Q Consensus 445 k~Ka~eLeqqv~~lka~~esl~QELqD---------yk~KA~R~l--kk~~E~agq~ie~~~~q~Eve--------~aR~ 505 (631)
..|.+-++.++.-|.+++--++..++. .|+||-|+| |+-=|+....+.-|.|-=+.. -...
T Consensus 25 ~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~ 104 (218)
T KOG1655|consen 25 NKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQA 104 (218)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 467788888888899999888888887 578888886 334444444443333321110 1111
Q ss_pred hhhhHHHHHHHHH--------HHHHHHHHHHHHHHHhhhhhhh----------hhHHHHHHHHHHHHH
Q 006784 506 GQRDAENKLSSLE--------AEVQKMRVEMAAMKRDAEHYSR----------EEHMELEKRYRELTD 555 (631)
Q Consensus 506 ~qreae~~lss~~--------aElq~lr~E~a~lkrda~~~sr----------q~~~ELE~RlrELTd 555 (631)
..-........+. ..+++|.+||..|..++...+- .+..+|+..|-.|.+
T Consensus 105 Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL~~ 172 (218)
T KOG1655|consen 105 TVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDALGQ 172 (218)
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHh
Confidence 1122222222222 2456777778888777765532 367778777766643
No 301
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=21.76 E-value=2.9e+02 Score=23.01 Aligned_cols=44 Identities=30% Similarity=0.326 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALAR 436 (631)
Q Consensus 393 EeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~ 436 (631)
.+|.+-+.+++.||+.+...+.++-.|=.+|+.+....-+-|..
T Consensus 4 ~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 4 LRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELER 47 (52)
T ss_pred HHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999888777777777766777765555444433
No 302
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=21.76 E-value=4e+02 Score=21.19 Aligned_cols=38 Identities=34% Similarity=0.472 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (631)
Q Consensus 437 aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~ 474 (631)
+.|.-.-.+.+..+++..|..++.+...|.+++..++.
T Consensus 16 A~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 16 ARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555667777888888888888888887776653
No 303
>PRK00736 hypothetical protein; Provisional
Probab=21.61 E-value=2.7e+02 Score=23.75 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHh
Q 006784 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361 (631)
Q Consensus 308 Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~ 361 (631)
|++.|+..|+.-+.-- +..=+.|.++++...-+|..|...+.....++..
T Consensus 2 ~~e~Ri~~LE~klafq----e~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 2 DAEERLTELEIRVAEQ----EKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455655555544222 1222567777777777777777666655555544
No 304
>PRK02119 hypothetical protein; Provisional
Probab=21.57 E-value=3.2e+02 Score=23.65 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHh
Q 006784 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEG 364 (631)
Q Consensus 306 ~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~ 364 (631)
+..+++|+..|+.-++-- +..=+.|.++++...-+|..|...|....+++.....
T Consensus 4 ~~~~e~Ri~~LE~rla~Q----E~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~ 58 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQ----ENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQP 58 (73)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 305
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=21.51 E-value=2.9e+02 Score=26.48 Aligned_cols=57 Identities=26% Similarity=0.377 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh----------------------------hhhHHHHHHHHHHHHHHHHHHHHHH
Q 006784 513 KLSSLEAEVQKMRVEMAAMKRDAEHYS----------------------------REEHMELEKRYRELTDLLYYKQTQL 564 (631)
Q Consensus 513 ~lss~~aElq~lr~E~a~lkrda~~~s----------------------------rq~~~ELE~RlrELTdlLy~KQTqL 564 (631)
-+..+.+++++|+.|=-.||+.+.+.. ++..--+|.+++-+|.-+.-|+-..
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KIe~kVr~~t~~~vTk~e~~ 83 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKIEAKVRKLTAKLVTKEEIE 83 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--BHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 466799999999999999999888764 1244678888888888888887777
Q ss_pred HHhhh
Q 006784 565 ETMAS 569 (631)
Q Consensus 565 EaLat 569 (631)
++|+.
T Consensus 84 e~l~~ 88 (118)
T PF05812_consen 84 EALKN 88 (118)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77654
No 306
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=21.27 E-value=1.4e+03 Score=27.03 Aligned_cols=111 Identities=20% Similarity=0.316 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH---hHHHHHHHHHHHHHHhhhhhhhhhhh----------hhH
Q 006784 268 QSKEARLARVCAGLSSRLQEYKSENAQLEELLVAEREL---SRSYEARIKQLEQELSVYKSEVTKVE----------SNL 334 (631)
Q Consensus 268 ~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~---~~Sl~ar~k~lQ~ELs~ar~~v~k~E----------sdl 334 (631)
+.=..+....+-++.....+++.+|.-|+++....... ...|..+-+.|+.++|+...-+...+ .-|
T Consensus 256 ~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl 335 (622)
T COG5185 256 QELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKL 335 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 44455666677778888999999999999988633332 45667778889999988877666553 566
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHHHh---hHhHHHHHHhhhhHhhh
Q 006784 335 AEALAAKNSEIETLVSSIDALKKQAAL---SEGNLASLQMNMESIMR 378 (631)
Q Consensus 335 teAlaAKdSqLavLkvrLdeadq~l~~---~~~~LeelQ~e~~RImq 378 (631)
.+-+--|.++|..|+...|+...++.- ..+..+..-.++..|-+
T Consensus 336 ~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~r 382 (622)
T COG5185 336 KSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTR 382 (622)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 777777888888888888888877532 33444444444444433
No 307
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.95 E-value=1.8e+02 Score=29.44 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHH--HHhHHHHHHHHHHHHHHhhhhhh
Q 006784 268 QSKEARLARVCAGLSSRLQEYKSENAQLEELLVAER--ELSRSYEARIKQLEQELSVYKSE 326 (631)
Q Consensus 268 ~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~--~~~~Sl~ar~k~lQ~ELs~ar~~ 326 (631)
.....+++.-...+..||.+++.+-..|.+||.... +-+-.++.++.+.|.++...+.+
T Consensus 124 ~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 124 NISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred eccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777777788899999999999999988443 11445555555555555444333
No 308
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=20.79 E-value=1e+03 Score=25.38 Aligned_cols=144 Identities=16% Similarity=0.257 Sum_probs=80.9
Q ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006784 385 TRMIQALR----EELASVERRAEEERAAHNATKMAAMEREVE-LEHR----AAEASMALARIQRIADERTAKAGELEQKV 455 (631)
Q Consensus 385 ~qalqaLR----EeLa~AE~rL~~Ereah~atr~aamERE~e-LE~q----~aEastALa~aqR~~~E~k~Ka~eLeqqv 455 (631)
+.++.+|- .+|.+|...| .|-+.....+++.++.+.+ |++. ..+...-.|-+.+.|--..-++..|..++
T Consensus 51 ~~~i~~le~~~~~~l~~ak~eL-qe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rql 129 (258)
T PF15397_consen 51 RTAIDILEYSNHKQLQQAKAEL-QEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQL 129 (258)
T ss_pred HHHHHHHHccChHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 45555553 3455555555 4444456667777776653 3333 45566666777888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc------------cCC---------CchHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 006784 456 AMLEVECATLQQELQDMEARLKRG------------QKK---------SPEEANQAIQMQAWQDEVERARQGQRDAENKL 514 (631)
Q Consensus 456 ~~lka~~esl~QELqDyk~KA~R~------------lkk---------~~E~agq~ie~~~~q~Eve~aR~~qreae~~l 514 (631)
.-++-.-+.=..+|..|-....-- +++ ++.---..++-+.+..++..-|.-..+++..+
T Consensus 130 q~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I 209 (258)
T PF15397_consen 130 QQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEI 209 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887765544333333322222111 110 11101111233556667777677666777777
Q ss_pred HHHHHHHHHHHHHHH
Q 006784 515 SSLEAEVQKMRVEMA 529 (631)
Q Consensus 515 ss~~aElq~lr~E~a 529 (631)
..++++++.|+....
T Consensus 210 ~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 210 PQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHhhc
Confidence 666666666665544
No 309
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=20.74 E-value=1.5e+03 Score=27.23 Aligned_cols=91 Identities=18% Similarity=0.300 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHH-HH----HHHHHHHHH----HHhhhhhHHHHHHHHH
Q 006784 448 AGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI-QM----QAWQDEVER----ARQGQRDAENKLSSLE 518 (631)
Q Consensus 448 a~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~i-e~----~~~q~Eve~----aR~~qreae~~lss~~ 518 (631)
....++.+.-++.+|+.|+..|........-+..-.....+.++ ++ ..|-.+|.+ .+..-...-+.|+.+.
T Consensus 244 Le~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le 323 (629)
T KOG0963|consen 244 LEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALE 323 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667777888888777666555544221222233333 21 223233322 2222333445677788
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 006784 519 AEVQKMRVEMAAMKRDAEHY 538 (631)
Q Consensus 519 aElq~lr~E~a~lkrda~~~ 538 (631)
+++.....++..|++.+..+
T Consensus 324 ~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 324 KELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 88888888888888888654
No 310
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=20.60 E-value=2.1e+02 Score=23.88 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=37.9
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccc-cCcccccccccccccccccchhhcccccC
Q 006784 562 TQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS-WSSWEEDAEMKSLEYVKIHFFIAIIPCWC 630 (631)
Q Consensus 562 TqLEaLatEKaAlqlQLER~~~q~reaQ~e~ersr~~rr~-~~~~~~d~~~~~~e~~~~~~~~~~~~~~~ 630 (631)
..|+.|-.|...+.-+||..+..+--........+...+. ...+.. +.+..||+-++||||
T Consensus 6 ~~L~~Lv~~R~~~~~kLE~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g 67 (85)
T PF14703_consen 6 SKLEKLVEEREKAVRKLESAESKYLKNANKRPKKRPKKKKKSESSSN--------KKRPRHRTGFLGLFG 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCccccCcccccc--------ccCCCCCCCcCCCCC
Confidence 4688899999999999999987774444321211221111 111211 667777777788876
No 311
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=20.59 E-value=7.3e+02 Score=23.51 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006784 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA 573 (631)
Q Consensus 494 ~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaA 573 (631)
+.+...++.|.....+++..+..++..+..++.|...+...++..-.....++....++=.+.++. .--..+..|++.
T Consensus 56 ~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~--~a~~~i~~ek~~ 133 (156)
T CHL00118 56 EYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLN--EATKQLEAQKEK 133 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 446677788999999999999999999999999988888888654444444444444444443332 233445556666
Q ss_pred HHHHhHHHHHH
Q 006784 574 AEFQLEKEMNR 584 (631)
Q Consensus 574 lqlQLER~~~q 584 (631)
..-+|......
T Consensus 134 a~~~l~~~v~~ 144 (156)
T CHL00118 134 ALKSLEEQVDT 144 (156)
T ss_pred HHHHHHHHHHH
Confidence 55555555433
No 312
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.49 E-value=8.5e+02 Score=24.24 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=4.6
Q ss_pred HHHHhhhhHhhh
Q 006784 367 ASLQMNMESIMR 378 (631)
Q Consensus 367 eelQ~e~~RImq 378 (631)
+.++.....++.
T Consensus 37 ~~l~~~i~~~l~ 48 (302)
T PF10186_consen 37 EELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 313
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.18 E-value=6.4e+02 Score=22.68 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (631)
Q Consensus 422 eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDy 472 (631)
.||..+.-++..++.+|-.+++=|-|-..|.+.+..+...-+.|.+|-.-.
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneql 58 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888999999988888878777776666555555544433
No 314
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.13 E-value=1.3e+03 Score=26.11 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006784 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMA 568 (631)
Q Consensus 494 ~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLa 568 (631)
+.|++|--+..+--..+.+.+.--+.|+..|+.|++.|-.-+.| +...|.|++=|.|=-=||-+..|=
T Consensus 251 ~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Y-------qs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 251 EALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAY-------QSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44555544433333334444444556666666666666666655 456788888888877777776663
Done!