Query 006784
Match_columns 631
No_of_seqs 37 out of 39
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 08:53:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.6 0.00029 9.8E-09 63.5 41.5 39 547-585 243-281 (284)
2 1c1g_A Tropomyosin; contractIl 98.5 0.00046 1.6E-08 62.1 36.7 37 499-535 224-260 (284)
3 1i84_S Smooth muscle myosin he 98.1 4.1E-06 1.4E-10 96.7 9.6 17 277-293 858-874 (1184)
4 1i84_S Smooth muscle myosin he 97.9 2.1E-05 7.2E-10 90.9 9.7 24 277-300 879-902 (1184)
5 3o0z_A RHO-associated protein 96.4 0.16 5.6E-06 48.5 17.0 143 247-412 9-162 (168)
6 3na7_A HP0958; flagellar bioge 96.0 1.3 4.3E-05 43.3 22.9 141 292-447 4-147 (256)
7 3na7_A HP0958; flagellar bioge 94.3 4.2 0.00015 39.6 20.4 96 272-369 21-116 (256)
8 3vkg_A Dynein heavy chain, cyt 91.8 30 0.001 45.2 26.1 35 435-469 2017-2051(3245)
9 2dfs_A Myosin-5A; myosin-V, in 91.0 6.9 0.00024 45.9 18.1 62 517-582 982-1043(1080)
10 2dfs_A Myosin-5A; myosin-V, in 90.6 4.8 0.00016 47.2 16.3 38 437-474 933-974 (1080)
11 3ol1_A Vimentin; structural ge 87.7 10 0.00036 33.6 12.9 54 509-563 52-106 (119)
12 3oja_B Anopheles plasmodium-re 87.4 15 0.00053 38.4 16.0 32 437-468 549-580 (597)
13 3vkg_A Dynein heavy chain, cyt 87.3 87 0.003 41.3 27.7 82 496-578 2012-2093(3245)
14 2fxo_A Myosin heavy chain, car 87.0 16 0.00055 32.6 16.4 111 338-474 15-125 (129)
15 3oja_B Anopheles plasmodium-re 86.2 13 0.00044 39.0 14.7 70 332-402 505-574 (597)
16 3o0z_A RHO-associated protein 84.2 30 0.001 33.1 21.8 139 390-585 10-152 (168)
17 3swk_A Vimentin; cytoskeleton, 82.8 7.9 0.00027 32.9 9.3 61 496-557 19-79 (86)
18 2v71_A Nuclear distribution pr 82.6 31 0.0011 33.5 14.4 117 252-368 25-155 (189)
19 3mq9_A Bone marrow stromal ant 80.6 44 0.0015 34.3 15.7 38 496-533 434-471 (471)
20 2fxo_A Myosin heavy chain, car 79.8 33 0.0011 30.6 15.5 100 489-588 11-123 (129)
21 3tnu_B Keratin, type II cytosk 73.7 13 0.00044 33.1 8.3 64 267-330 34-101 (129)
22 3u59_A Tropomyosin beta chain; 73.4 43 0.0015 28.7 13.5 82 437-535 14-95 (101)
23 2i1j_A Moesin; FERM, coiled-co 73.3 6.4 0.00022 43.0 7.4 57 423-479 340-396 (575)
24 3mq7_A Bone marrow stromal ant 72.9 40 0.0014 30.9 11.2 96 402-532 17-112 (121)
25 3u1c_A Tropomyosin alpha-1 cha 71.4 50 0.0017 28.5 13.5 82 437-535 14-95 (101)
26 2jee_A YIIU; FTSZ, septum, coi 70.1 22 0.00075 30.6 8.5 56 267-322 11-66 (81)
27 3a7p_A Autophagy protein 16; c 68.9 26 0.00088 33.2 9.4 62 312-377 69-130 (152)
28 3ni0_A Bone marrow stromal ant 68.4 48 0.0016 29.5 10.4 37 437-473 51-87 (99)
29 2ocy_A RAB guanine nucleotide 68.0 83 0.0028 29.7 17.8 40 437-476 106-145 (154)
30 3tnu_A Keratin, type I cytoske 66.1 16 0.00054 32.7 7.2 63 268-330 37-103 (131)
31 1ic2_A Tropomyosin alpha chain 65.0 58 0.002 26.9 10.5 66 493-566 8-73 (81)
32 3tnu_B Keratin, type II cytosk 64.9 34 0.0012 30.3 9.1 39 437-475 34-72 (129)
33 4dk0_A Putative MACA; alpha-ha 63.2 34 0.0012 33.6 9.6 75 450-538 81-155 (369)
34 3tnu_A Keratin, type I cytoske 63.1 29 0.00099 31.0 8.3 42 434-475 33-74 (131)
35 1x79_B RAB GTPase binding effe 61.8 59 0.002 29.4 9.9 61 313-373 15-75 (112)
36 2ocy_A RAB guanine nucleotide 61.6 1.1E+02 0.0037 28.9 16.0 79 492-574 59-141 (154)
37 3a7p_A Autophagy protein 16; c 60.5 70 0.0024 30.3 10.6 50 543-592 77-126 (152)
38 2i1j_A Moesin; FERM, coiled-co 60.3 22 0.00076 38.8 8.4 53 459-514 404-456 (575)
39 2eqb_B RAB guanine nucleotide 60.0 93 0.0032 27.5 12.6 64 494-561 29-96 (97)
40 3mq9_A Bone marrow stromal ant 59.9 1.5E+02 0.005 30.4 13.9 40 363-402 372-413 (471)
41 2w83_C C-JUN-amino-terminal ki 59.6 45 0.0015 28.6 8.3 37 279-316 5-42 (77)
42 2e7s_A RAB guanine nucleotide 58.9 11 0.00038 35.0 4.9 24 308-331 43-66 (135)
43 3q8t_A Beclin-1; autophagy, AT 58.3 90 0.0031 26.9 12.9 87 494-581 7-93 (96)
44 3fpp_A Macrolide-specific effl 57.4 43 0.0015 32.5 9.1 78 446-537 76-153 (341)
45 3q8t_A Beclin-1; autophagy, AT 56.6 97 0.0033 26.7 12.2 77 492-568 12-94 (96)
46 3ghg_A Fibrinogen alpha chain; 55.8 1.1E+02 0.0038 34.0 12.7 61 494-554 120-189 (562)
47 1l8d_A DNA double-strand break 55.8 54 0.0019 27.7 8.4 37 437-473 8-44 (112)
48 2b9c_A Striated-muscle alpha t 55.6 71 0.0024 29.5 9.7 46 509-555 98-143 (147)
49 3ol1_A Vimentin; structural ge 54.4 1.2E+02 0.0039 26.9 12.5 83 440-534 21-105 (119)
50 2jee_A YIIU; FTSZ, septum, coi 53.5 52 0.0018 28.3 7.8 49 421-469 9-57 (81)
51 3i00_A HIP-I, huntingtin-inter 52.7 49 0.0017 29.9 8.0 49 278-330 17-66 (120)
52 3m9b_A Proteasome-associated A 52.7 13 0.00045 37.5 4.6 67 517-585 22-91 (251)
53 2v71_A Nuclear distribution pr 52.5 1.7E+02 0.0059 28.3 19.9 61 261-324 9-69 (189)
54 2v66_B Nuclear distribution pr 50.8 1.4E+02 0.0048 26.8 12.3 36 332-367 66-101 (111)
55 3u59_A Tropomyosin beta chain; 49.1 1.3E+02 0.0043 25.8 12.3 46 306-369 46-91 (101)
56 2v66_B Nuclear distribution pr 48.2 1.5E+02 0.0053 26.6 15.3 104 447-575 4-107 (111)
57 1go4_E MAD1 (mitotic arrest de 47.6 52 0.0018 29.2 7.1 32 447-478 13-44 (100)
58 1deq_A Fibrinogen (alpha chain 47.0 3E+02 0.01 29.5 14.2 45 494-538 116-160 (390)
59 1oxz_A ADP-ribosylation factor 46.5 1.3E+02 0.0043 29.0 10.2 98 252-354 49-156 (186)
60 3cvf_A Homer-3, homer protein 44.3 1.1E+02 0.0039 26.0 8.4 26 274-299 4-29 (79)
61 3u1c_A Tropomyosin alpha-1 cha 44.0 1.6E+02 0.0053 25.4 14.3 37 437-473 63-99 (101)
62 3i00_A HIP-I, huntingtin-inter 41.9 1.7E+02 0.0059 26.3 9.7 63 455-537 17-79 (120)
63 3iyk_A VP5; icosahedral virus; 40.6 4.2E+02 0.014 29.4 17.0 67 342-408 145-211 (526)
64 2oqq_A Transcription factor HY 39.1 35 0.0012 26.3 4.0 37 263-303 4-40 (42)
65 2b9c_A Striated-muscle alpha t 38.9 2.4E+02 0.0081 26.0 13.3 55 416-470 50-104 (147)
66 3ajw_A Flagellar FLIJ protein; 38.6 1.9E+02 0.0066 24.9 16.4 99 433-535 13-111 (150)
67 2e7s_A RAB guanine nucleotide 37.3 46 0.0016 30.9 5.4 72 492-567 47-122 (135)
68 1naf_A ADP-ribosylation factor 36.6 1.3E+02 0.0044 28.3 8.4 99 252-355 33-141 (158)
69 3ghg_A Fibrinogen alpha chain; 36.5 3.7E+02 0.013 30.0 13.0 102 348-477 51-155 (562)
70 2f1m_A Acriflavine resistance 36.4 1.2E+02 0.0042 28.5 8.3 21 453-473 67-87 (277)
71 3hnw_A Uncharacterized protein 36.3 2.2E+02 0.0076 25.9 9.7 13 283-295 68-80 (138)
72 2w6a_A ARF GTPase-activating p 35.9 65 0.0022 26.6 5.4 44 244-292 7-50 (63)
73 1t2k_D Cyclic-AMP-dependent tr 34.1 60 0.0021 25.5 4.9 35 258-293 5-39 (61)
74 1ci6_A Transcription factor AT 33.9 64 0.0022 25.8 5.1 34 266-299 27-60 (63)
75 1gk4_A Vimentin; intermediate 33.9 1.9E+02 0.0064 24.1 8.1 47 284-330 2-52 (84)
76 3trt_A Vimentin; cytoskeleton, 33.5 1.2E+02 0.0041 24.3 6.7 68 465-532 7-76 (77)
77 1wt6_A Myotonin-protein kinase 32.9 1.1E+02 0.0039 26.3 6.7 43 494-536 27-69 (81)
78 3fpp_A Macrolide-specific effl 31.5 1.2E+02 0.0042 29.3 7.7 30 564-593 116-145 (341)
79 1m1j_B Fibrinogen beta chain; 31.5 4.8E+02 0.017 28.3 12.8 28 342-369 167-194 (464)
80 3tul_A Cell invasion protein S 31.2 3.5E+02 0.012 25.8 14.8 85 334-418 50-139 (158)
81 3jsv_C NF-kappa-B essential mo 30.8 2.4E+02 0.0083 24.8 8.6 73 507-590 11-89 (94)
82 4dk0_A Putative MACA; alpha-ha 30.6 1.7E+02 0.0058 28.6 8.6 19 312-330 85-103 (369)
83 3s9g_A Protein hexim1; cyclin 30.3 92 0.0032 27.9 5.9 43 251-293 47-89 (104)
84 3hnw_A Uncharacterized protein 30.0 3.2E+02 0.011 24.9 10.3 11 463-473 35-45 (138)
85 1dh3_A Transcription factor CR 29.6 1.3E+02 0.0046 23.5 6.2 38 437-474 13-50 (55)
86 3m91_A Proteasome-associated A 29.1 90 0.0031 24.6 5.1 34 260-293 14-47 (51)
87 3m9b_A Proteasome-associated A 28.5 64 0.0022 32.6 5.2 38 495-532 58-95 (251)
88 3nmd_A CGMP dependent protein 28.1 1.8E+02 0.0063 24.5 7.0 48 493-540 21-68 (72)
89 1o3x_A ADP-ribosylation factor 28.0 1.9E+02 0.0067 26.4 7.9 98 252-354 24-131 (140)
90 1f5n_A Interferon-induced guan 26.9 6.7E+02 0.023 27.6 13.6 40 432-471 480-519 (592)
91 2v4h_A NF-kappa-B essential mo 26.7 3.6E+02 0.012 24.4 11.7 33 504-536 30-62 (110)
92 2no2_A HIP-I, huntingtin-inter 26.3 3.3E+02 0.011 23.9 12.3 41 338-378 63-103 (107)
93 1wle_A Seryl-tRNA synthetase; 25.4 2.7E+02 0.0092 30.2 9.6 34 344-377 117-150 (501)
94 1m1j_C Fibrinogen gamma chain; 24.6 6.6E+02 0.022 26.7 12.9 44 431-474 26-69 (409)
95 2v4h_A NF-kappa-B essential mo 24.6 3.9E+02 0.013 24.1 12.0 63 342-409 23-85 (110)
96 3nmd_A CGMP dependent protein 23.9 1.3E+02 0.0044 25.4 5.4 40 337-376 27-66 (72)
97 4fm3_A Uncharacterized hypothe 23.2 3.9E+02 0.013 23.6 8.7 63 388-454 31-93 (98)
98 3mq7_A Bone marrow stromal ant 23.0 4.4E+02 0.015 24.2 13.1 79 450-536 22-102 (121)
99 1z56_A Ligase interacting fact 23.0 47 0.0016 33.6 3.0 66 260-325 162-235 (246)
100 3ra3_A P1C; coiled coil domain 22.8 55 0.0019 23.0 2.4 20 448-467 9-28 (28)
101 4e61_A Protein BIM1; EB1-like 22.6 2.3E+02 0.0079 25.4 7.0 47 433-479 5-51 (106)
102 3swy_A Cyclic nucleotide-gated 22.6 2.5E+02 0.0085 21.8 6.3 41 545-585 2-42 (46)
103 3swk_A Vimentin; cytoskeleton, 22.4 3.5E+02 0.012 22.8 11.6 74 446-533 7-84 (86)
104 2pms_C Pneumococcal surface pr 22.2 4.3E+02 0.015 24.3 8.9 27 266-292 10-36 (125)
105 2w6b_A RHO guanine nucleotide 22.1 2.4E+02 0.0081 23.0 6.3 40 267-306 1-40 (56)
106 1jnm_A Proto-oncogene C-JUN; B 21.9 2.9E+02 0.0099 21.6 7.4 27 400-426 4-30 (62)
107 3t98_B Nucleoporin NUP58/NUP45 21.8 2.5E+02 0.0086 24.3 7.0 28 274-301 10-37 (93)
108 2zqm_A Prefoldin beta subunit 21.4 1.4E+02 0.0046 25.1 5.2 42 445-486 76-117 (117)
109 3s4r_A Vimentin; alpha-helix, 20.8 3.9E+02 0.013 22.7 8.1 36 497-532 55-90 (93)
110 3m0d_C TNF receptor-associated 20.6 3.3E+02 0.011 21.8 7.1 55 345-400 8-62 (65)
111 1nfn_A Apolipoprotein E3; lipi 20.2 5.5E+02 0.019 24.2 10.1 41 250-290 23-65 (191)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.61 E-value=0.00029 Score=63.49 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHH
Q 006784 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (631)
Q Consensus 547 E~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~ 585 (631)
+..+..+..-+...+..+..+-...+.+..+++.....+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 243 ERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344444444445555555555555554444
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.54 E-value=0.00046 Score=62.14 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=15.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006784 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA 535 (631)
Q Consensus 499 Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda 535 (631)
++...+.....+...+..+...+..++.++..+...+
T Consensus 224 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (284)
T 1c1g_A 224 EIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444443333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.14 E-value=4.1e-06 Score=96.70 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=6.9
Q ss_pred HHhhhhhhhhhhhhhhH
Q 006784 277 VCAGLSSRLQEYKSENA 293 (631)
Q Consensus 277 v~~qls~rLs~lr~EN~ 293 (631)
.+..+..+|..++....
T Consensus 858 El~~L~~eL~el~~~L~ 874 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQ 874 (1184)
T ss_dssp HCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.92 E-value=2.1e-05 Score=90.90 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=9.3
Q ss_pred HHhhhhhhhhhhhhhhHHHHHHHH
Q 006784 277 VCAGLSSRLQEYKSENAQLEELLV 300 (631)
Q Consensus 277 v~~qls~rLs~lr~EN~QLEeLLr 300 (631)
.+..+..++..++.+...+..-|.
T Consensus 879 ~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 879 ELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444333333333
No 5
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.42 E-value=0.16 Score=48.52 Aligned_cols=143 Identities=24% Similarity=0.250 Sum_probs=69.2
Q ss_pred cchhhhHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHH-------HHHHHHHHHHH
Q 006784 247 TKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRS-------YEARIKQLEQE 319 (631)
Q Consensus 247 ~k~q~ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~S-------l~ar~k~lQ~E 319 (631)
..+++||+|+|..||++--+ ++.+++--.++..-.+++|..++-=.+.+.. |.+.+..||-.
T Consensus 9 ~~LekQL~E~n~kLk~EsE~-----------~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~ 77 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESDT-----------AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI 77 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999987544 3344444444555555555554433333333 34444444444
Q ss_pred HhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhh----hhHHHHHHHHHH
Q 006784 320 LSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT----ETRMIQALREEL 395 (631)
Q Consensus 320 Ls~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~----e~qalqaLREeL 395 (631)
|..=|........ -+..|..|+..+...+......+..+..++..+...-+.- .+..|+ |-=+|
T Consensus 78 L~qEr~~r~q~se-----------~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid-~~~eL 145 (168)
T 3o0z_A 78 LEAERRDRGHDSE-----------MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEID-LNYKL 145 (168)
T ss_dssp HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHH
Confidence 4333222222211 1222333333333333333333333333333333222221 122222 22467
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006784 396 ASVERRAEEERAAHNAT 412 (631)
Q Consensus 396 a~AE~rL~~Ereah~at 412 (631)
-.+..++..|-.+|.+|
T Consensus 146 KalQ~~~eqE~~~H~~T 162 (168)
T 3o0z_A 146 KSLQQRLEQEVNEHKVT 162 (168)
T ss_dssp HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888998888766
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.02 E-value=1.3 Score=43.28 Aligned_cols=141 Identities=19% Similarity=0.192 Sum_probs=72.9
Q ss_pred hHHHHHHHH-HHHHH-hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHH
Q 006784 292 NAQLEELLV-AEREL-SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369 (631)
Q Consensus 292 N~QLEeLLr-~E~~~-~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~Leel 369 (631)
|.+|+.||. ++.++ +..+..+.+.+..+|..... .++..+..+..+...+...+......+..++.+
T Consensus 4 ~~~L~~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~-----------~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~ 72 (256)
T 3na7_A 4 NTHLKQLIEISHLDKEIDSLEPLIREKRKDLDKALN-----------DKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 72 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666 55554 66666666666666643322 233334444455555555555555555555555
Q ss_pred HhhhhHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006784 370 QMNMESIMRNREL-TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAK 447 (631)
Q Consensus 370 Q~e~~RImqdh~~-~e~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~K 447 (631)
..-..+.-..-.. +.++-+++|.-++..++.+.. ...---++.|++-..++..+++....+...+..+...+..
T Consensus 73 ~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~----~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~ 147 (256)
T 3na7_A 73 NAKIASIQKKMSEIKSERELRSLNIEEDIAKERSN----QANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL 147 (256)
T ss_dssp HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222222 246777888888877664432 2222234455555555555666555555555555554443
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.30 E-value=4.2 Score=39.59 Aligned_cols=96 Identities=13% Similarity=0.202 Sum_probs=55.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHH
Q 006784 272 ARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSS 351 (631)
Q Consensus 272 ~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvr 351 (631)
.+|......+-.+|..+..+...+..-+..-......+...++.+..++...+.++.+.+.-|.. +..+-++..|...
T Consensus 21 ~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~--v~~~kE~~aL~kE 98 (256)
T 3na7_A 21 DSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE--IKSERELRSLNIE 98 (256)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CSSSSHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHH
Confidence 33333333344444444444444444444444445666666777777777777777777666643 2245677777777
Q ss_pred HHHHHHHHHhhHhHHHHH
Q 006784 352 IDALKKQAALSEGNLASL 369 (631)
Q Consensus 352 Ldeadq~l~~~~~~Leel 369 (631)
++.+.......+..+-++
T Consensus 99 ie~~~~~i~~lE~eile~ 116 (256)
T 3na7_A 99 EDIAKERSNQANREIENL 116 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777766666666665555
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.76 E-value=30 Score=45.25 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006784 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (631)
Q Consensus 435 a~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QEL 469 (631)
+.++..+...+.+..+++.+++.++..++.|+.++
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~ 2051 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEY 2051 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444333333334444433333333333333
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.99 E-value=6.9 Score=45.88 Aligned_cols=62 Identities=10% Similarity=0.179 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHH
Q 006784 517 LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (631)
Q Consensus 517 ~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~ 582 (631)
..+++..|+.|++.++.++.. ...+...||.++.++.+-| |..+..|..|++-|.-|++..+
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~-~~ke~~~lee~~~~~~~~L---~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQ-TQTEKKTIEEWADKYKHET---EQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445444444432 1223344555555555533 2455555566666665555555
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.58 E-value=4.8 Score=47.19 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 006784 437 IQRIADERTAKAGELEQKVA----MLEVECATLQQELQDMEA 474 (631)
Q Consensus 437 aqR~~~E~k~Ka~eLeqqv~----~lka~~esl~QELqDyk~ 474 (631)
+++++++...+..+|+.++. .+..++..|+.++.+++.
T Consensus 933 Lq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 933 LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554432 344455555555555554
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=87.70 E-value=10 Score=33.63 Aligned_cols=54 Identities=13% Similarity=0.337 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHH
Q 006784 509 DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTD-LLYYKQTQ 563 (631)
Q Consensus 509 eae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTd-lLy~KQTq 563 (631)
++..+.......++.++.++..+|.+++. -.....+||.++..|+| +.|+|+.-
T Consensus 52 dfk~KyE~E~~~r~~~E~di~~lrK~lD~-~~l~r~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 52 RLREKLQEEMLQREEAENTLQSFRQDVDN-ASLARLDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhcccH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333445567778888899988875 34677899999998886 45566543
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.39 E-value=15 Score=38.38 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006784 437 IQRIADERTAKAGELEQKVAMLEVECATLQQE 468 (631)
Q Consensus 437 aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QE 468 (631)
+++.+++.+.+..++.+++..+++++..+.++
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666655555555444444444433
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.35 E-value=87 Score=41.27 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006784 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (631)
Q Consensus 496 ~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlq 575 (631)
++.+++.|...-..++..|...+++++.++..++.|+.+.+. .-.+-..|+........-|-.=..-+..|+.||.-=.
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~-~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYAT-LIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence 444455444444555555555555555555556665555542 1234455666666666666666666777777775443
Q ss_pred HHh
Q 006784 576 FQL 578 (631)
Q Consensus 576 lQL 578 (631)
-+.
T Consensus 2091 ~~~ 2093 (3245)
T 3vkg_A 2091 QQS 2093 (3245)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.04 E-value=16 Score=32.57 Aligned_cols=111 Identities=23% Similarity=0.387 Sum_probs=72.7
Q ss_pred HhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAM 417 (631)
Q Consensus 338 laAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah~atr~aam 417 (631)
+.+++.+|..|+..|........-.+.....+..++..|.. .|++=++-|+.|+-+..+- .
T Consensus 15 ~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~--------qL~~E~~~l~e~EE~~~~L-----------~ 75 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL--------QVQAEQDNLADAEERCDQL-----------I 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH-----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHH-----------H
Confidence 44556677777777665555555545544444444443332 2555666666666655432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (631)
Q Consensus 418 ERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~ 474 (631)
.+..+||..+.++ +..+++...+..+|...-+.++..|..|+..|.|++.
T Consensus 76 ~~k~eLe~~l~el-------~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 76 KNKIQLEAKVKEM-------NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444577776665 5667888888999999999999999999999998763
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.21 E-value=13 Score=38.97 Aligned_cols=70 Identities=11% Similarity=0.120 Sum_probs=29.4
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 006784 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (631)
Q Consensus 332 sdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL 402 (631)
..+...+..-...++.+...++...+......+.++.++.++.++-+ +.+.+...+..|+.++......+
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~-~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK-QLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH-HHhhhhhHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444444322 22223333444444444444433
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.21 E-value=30 Score=33.13 Aligned_cols=139 Identities=19% Similarity=0.285 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006784 390 ALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (631)
Q Consensus 390 aLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QEL 469 (631)
.|.-.|.++...|+.|-+++...|-.. +|+..+ +...-..+.||+.++..+......|.+++
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK~~-----------tEl~k~-------~~~~E~~~rELq~~~~~L~~~k~~Leke~ 71 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRKSH-----------TEMSKS-------ISQLESLNRELQERNRILENSKSQTDKDY 71 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777777777776654333222 333333 22333455666666677777777776666
Q ss_pred HHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 006784 470 QDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKR 549 (631)
Q Consensus 470 qDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~R 549 (631)
..+ |.+++..|........-+..++..++.|..|+..++.-. ..++.-
T Consensus 72 ~~L------------------------Qa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~--------~k~~~e 119 (168)
T 3o0z_A 72 YQL------------------------QAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL--------EKVEGE 119 (168)
T ss_dssp HHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 543 233433333333444444455556666666665554332 334444
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH----HHhHHHHHHH
Q 006784 550 YRELTDLLYYKQTQLETMASEKAAAE----FQLEKEMNRL 585 (631)
Q Consensus 550 lrELTdlLy~KQTqLEaLatEKaAlq----lQLER~~~q~ 585 (631)
-+.|+|.|. .|=-|||++. |.|.-.-+.|
T Consensus 120 ~r~L~Ekl~-------~lEKe~a~~eid~~~eLKalQ~~~ 152 (168)
T 3o0z_A 120 RKEAQDMLN-------HSEKEKNNLEIDLNYKLKSLQQRL 152 (168)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 456666554 2345778877 6665544444
No 17
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=82.83 E-value=7.9 Score=32.90 Aligned_cols=61 Identities=11% Similarity=0.222 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 006784 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL 557 (631)
Q Consensus 496 ~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlL 557 (631)
+.-|++.++.....+..+.......++.++.++..||.|++. -....++||.++-.|+|=|
T Consensus 19 l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~-a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 19 VEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN-ASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 334555666666667777777788889999999999999986 4577899999999999755
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=82.59 E-value=31 Score=33.46 Aligned_cols=117 Identities=20% Similarity=0.211 Sum_probs=65.1
Q ss_pred hHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHH----HHHHHHHHHHHhhhhhhh
Q 006784 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSY----EARIKQLEQELSVYKSEV 327 (631)
Q Consensus 252 ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl----~ar~k~lQ~ELs~ar~~v 327 (631)
++.+.+.-|-.-..+-+.=|+.|-..+.++.+++..|+..|.+|..-+-.=....... ...+..||.++...+...
T Consensus 25 ~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~ 104 (189)
T 2v71_A 25 SFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIK 104 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666677777777777777777777764333322111111111 111444444444444333
Q ss_pred hhh-------h---hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHH
Q 006784 328 TKV-------E---SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLAS 368 (631)
Q Consensus 328 ~k~-------E---sdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~Lee 368 (631)
... | |||--+.=+.-+-|+.+..+|..+=.....++.-|.+
T Consensus 105 ~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 105 EQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 3 7777777777777777777777776666666666653
No 19
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.63 E-value=44 Score=34.28 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKR 533 (631)
Q Consensus 496 ~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkr 533 (631)
|..+|..+.-...++|.++..+.++++.++.||..+|+
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444433345667888888899999999999887764
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=79.84 E-value=33 Score=30.58 Aligned_cols=100 Identities=13% Similarity=0.238 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----------h--hhHHHHHHHHHHHHH
Q 006784 489 QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS-----------R--EEHMELEKRYRELTD 555 (631)
Q Consensus 489 q~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~s-----------r--q~~~ELE~RlrELTd 555 (631)
..-+|..+..++...+......+.....+......+..|+..|..++.... + ....+||..|+++.+
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666555555555555555555555555555555554443321 1 255889999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q 006784 556 LLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (631)
Q Consensus 556 lLy~KQTqLEaLatEKaAlqlQLER~~~q~rea 588 (631)
-|-.---+...|.++|--++-.+.-..+++.+.
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888889999888888877777766654
No 21
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.73 E-value=13 Score=33.08 Aligned_cols=64 Identities=16% Similarity=0.309 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHH-HHHH---hHHHHHHHHHHHHHHhhhhhhhhhh
Q 006784 267 GQSKEARLARVCAGLSSRLQEYKSENAQLEELLVA-EREL---SRSYEARIKQLEQELSVYKSEVTKV 330 (631)
Q Consensus 267 ~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~-E~~~---~~Sl~ar~k~lQ~ELs~ar~~v~k~ 330 (631)
.+.-..+|-|.+..|..+|+.+++.|..||.-|+. |... +..+...+..|..+|..+|..+++-
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35566788889999999999999999999888872 2211 5566666777777777766555543
No 22
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=73.38 E-value=43 Score=28.68 Aligned_cols=82 Identities=24% Similarity=0.388 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 006784 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSS 516 (631)
Q Consensus 437 aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss 516 (631)
+.-..+...-|+..|+.+++.++..+.-+-.++..+.-|.+ .++.+++.+...-..+...+..
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq-----------------~lE~eld~~~e~l~~a~~kLe~ 76 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK-----------------GTEDEVEKYSESVKEAQEKLEQ 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556667777777777777777777766666555443 3445666655555566666666
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 006784 517 LEAEVQKMRVEMAAMKRDA 535 (631)
Q Consensus 517 ~~aElq~lr~E~a~lkrda 535 (631)
....+..++.|+++|-|-+
T Consensus 77 ~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 77 AEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777888888877655
No 23
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=73.26 E-value=6.4 Score=42.99 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006784 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (631)
Q Consensus 423 LE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~ 479 (631)
|+.++..+-..+.+++..+.+...++..|+.+++.++.+.+.|.++-...+.--+|.
T Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l 396 (575)
T 2i1j_A 340 YQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRL 396 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555556666666666666666666666666666555555444444333
No 24
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=72.93 E-value=40 Score=30.94 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 006784 402 AEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQK 481 (631)
Q Consensus 402 L~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lk 481 (631)
|+.++++|+.+++ |+++ |+++|..+-+-...+.-|-+-|..+...+.-. ++. +
T Consensus 17 LrAq~ECrN~T~l--------Lq~q-------LTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~e---------kaq-~-- 69 (121)
T 3mq7_A 17 LRAVMEARNVTHL--------LQQE-------LTEAQKGFQDVEAQAATANHTVMALMASLDAE---------KAQ-G-- 69 (121)
T ss_dssp HHHHHHHHHHHHH--------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH-H--
T ss_pred HHHHHHHHhHHHH--------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH-H--
Confidence 5567777777765 4443 34445555555555555555555554443321 111 0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 482 KSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 532 (631)
Q Consensus 482 k~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lk 532 (631)
-..++.+++||.+.-+.-+.+..++.+++.+-+.+-+-|..-+
T Consensus 70 --------q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 70 --------QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 1135566677777777777777777777777666655554443
No 25
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=71.40 E-value=50 Score=28.53 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 006784 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSS 516 (631)
Q Consensus 437 aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss 516 (631)
+.-..+....|+..|+.+++.++..+.-+-+|+..+.-|.+ .++.+++.+...--++...+..
T Consensus 14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~-----------------~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR-----------------VTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556666666666666666666666655544433 3445666665555566666666
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 006784 517 LEAEVQKMRVEMAAMKRDA 535 (631)
Q Consensus 517 ~~aElq~lr~E~a~lkrda 535 (631)
....+..++.++++|-|-+
T Consensus 77 ~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 77 AEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776654
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=70.09 E-value=22 Score=30.55 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 006784 267 GQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (631)
Q Consensus 267 ~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ 322 (631)
+-.|...+..++.=|.-++.+||.+|..|.+-...-...-..+...+.+|++|.+.
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44566666666666667777777777733332222222233466666666666643
No 27
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=68.87 E-value=26 Score=33.19 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhh
Q 006784 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (631)
Q Consensus 312 r~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RIm 377 (631)
.+..|+.++...+.++ .++.+.|..|+.-++.|...|.+..-++...++++..|+.++..|+
T Consensus 69 ~I~~L~~El~~l~~ki----~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 69 TLAILQKELKSKEQEI----RRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433333 4566677888999999999999999999999999999999886554
No 28
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=68.38 E-value=48 Score=29.53 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (631)
Q Consensus 437 aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk 473 (631)
+.-+|..++...-+-+-+|+-++-++..|+|.|+|.-
T Consensus 51 L~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 51 LQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666665554555567777888888888888854
No 29
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.95 E-value=83 Score=29.71 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (631)
Q Consensus 437 aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA 476 (631)
+.|.-..-..|...|+.+++-.+.-+++++-+|.+.|.-.
T Consensus 106 ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 106 ARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555667888888888888888999999998887643
No 30
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.15 E-value=16 Score=32.66 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH-HHHHH---hHHHHHHHHHHHHHHhhhhhhhhhh
Q 006784 268 QSKEARLARVCAGLSSRLQEYKSENAQLEELLV-AEREL---SRSYEARIKQLEQELSVYKSEVTKV 330 (631)
Q Consensus 268 ~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr-~E~~~---~~Sl~ar~k~lQ~ELs~ar~~v~k~ 330 (631)
+.-...|-|.+..|..+|+.++..|..||.-|+ .|... +..+...+..|..+|..+|..+++-
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567778888888999999999998888776 22221 4556666677777776666555443
No 31
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=65.01 E-value=58 Score=26.89 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLET 566 (631)
Q Consensus 493 ~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEa 566 (631)
|+.++.+.+.+...-..++..+......+..++.||.+|.+-+. .||..|..+-+-|-.-|+.||.
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq--------~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLK--------GTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777788888888888888777663 3444454555555555555553
No 32
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.92 E-value=34 Score=30.34 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (631)
Q Consensus 437 aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~K 475 (631)
+.-.+.+-++.+..|+-++.+++....+|...|.|++.+
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555554443
No 33
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=63.18 E-value=34 Score=33.59 Aligned_cols=75 Identities=7% Similarity=0.156 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006784 450 ELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529 (631)
Q Consensus 450 eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a 529 (631)
.++.++..+++.++.++.++..|+.-...+.-.. .+++.++.....+++.+...++++..++.++.
T Consensus 81 ~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~--------------~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~ 146 (369)
T 4dk0_A 81 SYQAQLVARKTAYDVALSNYQRLSKLYGQKATSL--------------DTLNTAKATLNNAKAEMDVVQENIKQAEIEVN 146 (369)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCG--------------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666655444332211 13344444445555666667777777777777
Q ss_pred HHHHhhhhh
Q 006784 530 AMKRDAEHY 538 (631)
Q Consensus 530 ~lkrda~~~ 538 (631)
.++.++.++
T Consensus 147 ~a~~~l~~~ 155 (369)
T 4dk0_A 147 TAETNLGYT 155 (369)
T ss_dssp HHHHTTCCS
T ss_pred HHHHHhhcC
Confidence 777776553
No 34
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.08 E-value=29 Score=30.96 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (631)
Q Consensus 434 La~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~K 475 (631)
|..+.-.+.+-++.+..|+-++.+++....+|...|.|++.+
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333344444444555555555555555555555555555443
No 35
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=61.76 E-value=59 Score=29.36 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=44.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhh
Q 006784 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (631)
Q Consensus 313 ~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~ 373 (631)
..+|+++|.+.+......|+-+.+.-..-..++.+|..+++.+.+.|..+......++.+.
T Consensus 15 ~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~v 75 (112)
T 1x79_B 15 LRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDV 75 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655555566667777777788999999999999999988888776665443
No 36
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.61 E-value=1.1e+02 Score=28.89 Aligned_cols=79 Identities=23% Similarity=0.345 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006784 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE----MAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETM 567 (631)
Q Consensus 492 e~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E----~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaL 567 (631)
++..|..++...+...+.+|.......+|++.|..- .-.|=.++ |..+..+|.|...|-.-|-.|.+.|+.|
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a----r~~~~~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA----RKEKYAIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888888888888888999999999888654 33333333 5677889999999999998898888876
Q ss_pred hhHHHHH
Q 006784 568 ASEKAAA 574 (631)
Q Consensus 568 atEKaAl 574 (631)
-..-+.+
T Consensus 135 q~ql~~L 141 (154)
T 2ocy_A 135 TLQLKNL 141 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
No 37
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=60.51 E-value=70 Score=30.31 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 006784 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEA 592 (631)
Q Consensus 543 ~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~reaQ~e~ 592 (631)
...|+.+++.|.+-|-.|...++.+-.|..++++|+.-.+..++..+.+.
T Consensus 77 l~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 77 LKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999998888888753
No 38
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=60.28 E-value=22 Score=38.81 Aligned_cols=53 Identities=28% Similarity=0.354 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 006784 459 EVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKL 514 (631)
Q Consensus 459 ka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~l 514 (631)
..+-..|.+++.+|...+.|... +.....-+...|+.++..||...+.+..+|
T Consensus 404 ~~e~~~l~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l 456 (575)
T 2i1j_A 404 AAERQKLEDEIRAKQEEVSRIQQ---EVELKDSETRRLQEEVEDARRKQDEAAAAL 456 (575)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445577777788888777754 222233355679999999998888777766
No 39
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.00 E-value=93 Score=27.54 Aligned_cols=64 Identities=23% Similarity=0.361 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006784 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE----MAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ 561 (631)
Q Consensus 494 ~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E----~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQ 561 (631)
..|+.++...+.....++.....+.+|++.|..- .-.|=.++ |..+..+|.|.+.|-.-|--|.
T Consensus 29 ~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a----r~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 29 KRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA----RKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcc
Confidence 3344455555555555555666666666555443 22222222 3445556666666655554443
No 40
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.87 E-value=1.5e+02 Score=30.41 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=17.8
Q ss_pred HhHHHHHHhhhhHhhhhhhhh--hhHHHHHHHHHHHHHHHHH
Q 006784 363 EGNLASLQMNMESIMRNRELT--ETRMIQALREELASVERRA 402 (631)
Q Consensus 363 ~~~LeelQ~e~~RImqdh~~~--e~qalqaLREeLa~AE~rL 402 (631)
+++|..++....++|.+--.. -...-..||..|.+++.-+
T Consensus 372 eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~ 413 (471)
T 3mq9_A 372 DEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGF 413 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhH
Confidence 445555555555555432221 1233344555555554444
No 41
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=59.58 E-value=45 Score=28.60 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=18.4
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHH-hHHHHHHHHHH
Q 006784 279 AGLSSRLQEYKSENAQLEELLVAEREL-SRSYEARIKQL 316 (631)
Q Consensus 279 ~qls~rLs~lr~EN~QLEeLLr~E~~~-~~Sl~ar~k~l 316 (631)
.|.+..+.+|=.||.||=+-= |...- ..+|++|+.+|
T Consensus 5 ~gmgkevEnLi~EN~eLl~TK-NaLnvvk~DLI~rvdEL 42 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETK-NALNIVKNDLIAKVDEL 42 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 456666667777776432111 22222 45566664443
No 42
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.87 E-value=11 Score=34.98 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhh
Q 006784 308 SYEARIKQLEQELSVYKSEVTKVE 331 (631)
Q Consensus 308 Sl~ar~k~lQ~ELs~ar~~v~k~E 331 (631)
.+...++.|+.+|..-+.....+|
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE 66 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAE 66 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555544444444
No 43
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=58.28 E-value=90 Score=26.88 Aligned_cols=87 Identities=16% Similarity=0.271 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006784 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA 573 (631)
Q Consensus 494 ~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaA 573 (631)
.+++.++.........+...|..+.++...+..||..+........ ....+.-+.|+.+.=-|+.-|-.+-.+-+-..-
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~-~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~ 85 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD-QEEAQYQREYSEFKRQQLELDDELKSVENQMRY 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666654321 222333344444444455555555555555555
Q ss_pred HHHHhHHH
Q 006784 574 AEFQLEKE 581 (631)
Q Consensus 574 lqlQLER~ 581 (631)
.+-||+|+
T Consensus 86 ~~~qLdkL 93 (96)
T 3q8t_A 86 AQMQLDKL 93 (96)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
No 44
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=57.41 E-value=43 Score=32.53 Aligned_cols=78 Identities=12% Similarity=0.168 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 006784 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 525 (631)
Q Consensus 446 ~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr 525 (631)
.....++.++..+++.++.++.++..|+.-...+.-. +.+++.++.....++..+..+++++..++
T Consensus 76 a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s--------------~~~~~~a~~~~~~~~a~l~~~~a~l~~a~ 141 (341)
T 3fpp_A 76 ATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVS--------------QQDLDNAATEMAVKQAQIGTIDAQIKRNQ 141 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSST--------------THHHHHHHHHHHHTHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556667777777777777766655543321 11334444444444455555666666666
Q ss_pred HHHHHHHHhhhh
Q 006784 526 VEMAAMKRDAEH 537 (631)
Q Consensus 526 ~E~a~lkrda~~ 537 (631)
..+..++.++.+
T Consensus 142 a~l~~a~~~l~~ 153 (341)
T 3fpp_A 142 ASLDTAKTNLDY 153 (341)
T ss_dssp HHHTTTTTTTTS
T ss_pred HHHHHHHHhhhC
Confidence 665555555544
No 45
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=56.56 E-value=97 Score=26.69 Aligned_cols=77 Identities=21% Similarity=0.418 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSR------EEHMELEKRYRELTDLLYYKQTQLE 565 (631)
Q Consensus 492 e~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~sr------q~~~ELE~RlrELTdlLy~KQTqLE 565 (631)
++..+..+-..+.+.-..++..-..+..++..++.|...+..+=..|-+ ....+++..+..|---+.|=|+||+
T Consensus 12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555566666666666666666666666555544432 3567888888888888888888888
Q ss_pred Hhh
Q 006784 566 TMA 568 (631)
Q Consensus 566 aLa 568 (631)
.|-
T Consensus 92 kL~ 94 (96)
T 3q8t_A 92 KLK 94 (96)
T ss_dssp HHH
T ss_pred Hhh
Confidence 773
No 46
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.85 E-value=1.1e+02 Score=34.04 Aligned_cols=61 Identities=8% Similarity=0.152 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----h----hhhHHHHHHHHHHHH
Q 006784 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY-----S----REEHMELEKRYRELT 554 (631)
Q Consensus 494 ~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~-----s----rq~~~ELE~RlrELT 554 (631)
+-|+.+|+..=...+.|+..|.....++|+|++.|..-.+.-+-. . ..+-..++|+|-+|.
T Consensus 120 qyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 120 EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHh
Confidence 335555554444555555555555556666655554444433221 1 135578888887764
No 47
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=55.84 E-value=54 Score=27.70 Aligned_cols=37 Identities=11% Similarity=0.306 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (631)
Q Consensus 437 aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk 473 (631)
+...+++-..+..+|......++..+..+...+..++
T Consensus 8 ~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 8 LETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555555666666666666666666666666663
No 48
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=55.56 E-value=71 Score=29.54 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 006784 509 DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTD 555 (631)
Q Consensus 509 eae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTd 555 (631)
.++..+..+..++..+-.-|..|--.-..| ++-...+|.+++.||+
T Consensus 98 ~aE~k~~eLEeeL~~~~~nlKsLE~~eeka-s~rE~~yee~I~~L~~ 143 (147)
T 2b9c_A 98 LSEGKCAELEEELKTVTNNLKSLEDKVEEL-LSKNYHLENEVARLKK 143 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhHHHH-HHHHHHHHHHHHHHHH
Confidence 333333334434433333333333333322 2334556666666654
No 49
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=54.42 E-value=1.2e+02 Score=26.91 Aligned_cols=83 Identities=20% Similarity=0.334 Sum_probs=47.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006784 440 IADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI--QMQAWQDEVERARQGQRDAENKLSSL 517 (631)
Q Consensus 440 ~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~i--e~~~~q~Eve~aR~~qreae~~lss~ 517 (631)
.+.+-++.++.+...-..+..++..++-.+.||+.|-.-.+. ..+.+ ++..++..|+.+-...- .+
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~-----~r~~~E~di~~lrK~lD~~~l~r~-------dL 88 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML-----QREEAENTLQSFRQDVDNASLARL-------DL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-----HHHHHHHHHHHhhhcccHHHHHHH-------HH
Confidence 344445556666666666777888888888888877653221 11122 33445555554333333 35
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006784 518 EAEVQKMRVEMAAMKRD 534 (631)
Q Consensus 518 ~aElq~lr~E~a~lkrd 534 (631)
+.+++.|+.||.+||.-
T Consensus 89 E~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 89 ERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55667777777777653
No 50
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=53.50 E-value=52 Score=28.28 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006784 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (631)
Q Consensus 421 ~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QEL 469 (631)
..||..+..++...+.+|-.+++-+.+-..|.+++..++...+.|.+|.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en 57 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELEREN 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3588999999999999999999999999888888888555444444443
No 51
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=52.74 E-value=49 Score=29.87 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=32.7
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhhhhhhhhhh
Q 006784 278 CAGLSSRLQEYKSENAQLEELLVAEREL-SRSYEARIKQLEQELSVYKSEVTKV 330 (631)
Q Consensus 278 ~~qls~rLs~lr~EN~QLEeLLr~E~~~-~~Sl~ar~k~lQ~ELs~ar~~v~k~ 330 (631)
..+|+..++.||.|+. -|..|..- +..|..++.+|+-||.-.|..+.++
T Consensus 17 Ie~Lkreie~lk~ele----~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a 66 (120)
T 3i00_A 17 IERLYREISGLKAQLE----NMKTESQRVVLQLKGHVSELEADLAEQQHLRQQA 66 (120)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555 44445444 8899999999999998887665554
No 52
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=52.65 E-value=13 Score=37.54 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHH
Q 006784 517 LEAEVQKMRVEMAAMKRDAEHY---SREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (631)
Q Consensus 517 ~~aElq~lr~E~a~lkrda~~~---srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~ 585 (631)
...++..++.|+..|++.+.++ ++.... |.||++|..-++..+.+.+.|..+...+.-+|++.-..+
T Consensus 22 ~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~--~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 22 DAAELEQLRREAAVLREQLENAVGSHAPTRS--ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp ------------------------------C--CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhcccCcccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667778888888888655 444444 899999999999999999999988888777776665433
No 53
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=52.49 E-value=1.7e+02 Score=28.34 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=38.4
Q ss_pred HHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 006784 261 KTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (631)
Q Consensus 261 ~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~~Sl~ar~k~lQ~ELs~ar 324 (631)
..+|.|-+.+...+..-+.++...|.++...-.+||..|-.+..- ++.+.+.|+..++..+
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~---~Ek~~~~L~~~~~~L~ 69 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQ---AEQRNRDLQADNQRLK 69 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 345666666666666777777777777777777777766655443 3445555555555553
No 54
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.81 E-value=1.4e+02 Score=26.83 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=27.4
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHH
Q 006784 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (631)
Q Consensus 332 sdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~Le 367 (631)
|||--+-=+.-+-|+.+..+|..|=..-..++.-|.
T Consensus 66 DDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 66 DDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677667777778888888888888777777666665
No 55
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=49.09 E-value=1.3e+02 Score=25.79 Aligned_cols=46 Identities=22% Similarity=0.397 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHH
Q 006784 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369 (631)
Q Consensus 306 ~~Sl~ar~k~lQ~ELs~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdeadq~l~~~~~~Leel 369 (631)
+.+|.-++..|+.++-.+ ...|......|+++...+.-.++..++|
T Consensus 46 i~sL~kKiq~lE~eld~~------------------~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 46 QQGLQKKLKGTEDEVEKY------------------SESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555565555443 3344455555556665555556666666
No 56
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=48.18 E-value=1.5e+02 Score=26.56 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 006784 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRV 526 (631)
Q Consensus 447 Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~ 526 (631)
|..+|..++..++.+++++ +.|.... ..-+...+..||.|+...|...+.+...+..+++.-++++-
T Consensus 4 ~~rdL~~~~~~L~~E~e~~-------k~K~~~~------~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEAL-------KEKLEHQ------YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 4555555555555555554 4444421 12233466778888888888877776666655555554432
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006784 527 EMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (631)
Q Consensus 527 E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaLatEKaAlq 575 (631)
..+. ...+-.++|.+|+.. |.+-..||.=--||-.|.
T Consensus 71 -------~~R~-t~~SLeD~E~k~n~a----iErnalLE~El~EKe~L~ 107 (111)
T 2v66_B 71 -------AKRA-TIVSLEDFEQRLNQA----IERNAFLESELDEKESLL 107 (111)
T ss_dssp -------HHHH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred -------HHHH-HHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 2221 235667888888765 445555555444665554
No 57
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.60 E-value=52 Score=29.17 Aligned_cols=32 Identities=41% Similarity=0.472 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006784 447 KAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (631)
Q Consensus 447 Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R 478 (631)
.+..|..++..++.++..|+++...++.+..+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999999999998888877
No 58
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=47.03 E-value=3e+02 Score=29.54 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006784 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY 538 (631)
Q Consensus 494 ~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~ 538 (631)
+.|+..+...+..+...-..|..++.-+..++++|..|--|+++-
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777788889999999999999999888665
No 59
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=46.51 E-value=1.3e+02 Score=28.97 Aligned_cols=98 Identities=17% Similarity=0.287 Sum_probs=61.2
Q ss_pred hHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHh
Q 006784 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVA----------ERELSRSYEARIKQLEQELS 321 (631)
Q Consensus 252 ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~----------E~~~~~Sl~ar~k~lQ~ELs 321 (631)
-|.+||.|+|.-+.+-+.| ..-.+++.+.|+..+.-..-|.+||.+ +.+++..|-.+.+.+|.-+-
T Consensus 49 DL~~AN~LiK~m~~~d~~r----~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~ 124 (186)
T 1oxz_A 49 DLRAANKLIKEMVQEDQKR----MEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLF 124 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999764333 444455566788888888888889984 56777777777777776664
Q ss_pred hhhhhhhhhhhhHHHHHhcccchhHHHHHHHHH
Q 006784 322 VYKSEVTKVESNLAEALAAKNSEIETLVSSIDA 354 (631)
Q Consensus 322 ~ar~~v~k~EsdlteAlaAKdSqLavLkvrLde 354 (631)
+.=..+.-=|.-|.+.|.+-| .|--+-.+|+.
T Consensus 125 ~Li~e~~ddee~L~elL~~ND-~Ln~vl~kY~~ 156 (186)
T 1oxz_A 125 RLASDTEDNDEALAEILQAND-NLTQVINLYKQ 156 (186)
T ss_dssp HHHHHCCSCHHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred HHHHHccCCHHHHHHHHHhhH-HHHHHHHHHHH
Confidence 432111101234555555533 44444444543
No 60
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=44.32 E-value=1.1e+02 Score=26.03 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=16.5
Q ss_pred HHHHHhhhhhhhhhhhhhhHHHHHHH
Q 006784 274 LARVCAGLSSRLQEYKSENAQLEELL 299 (631)
Q Consensus 274 L~rv~~qls~rLs~lr~EN~QLEeLL 299 (631)
|-..|+-++.+|+.+..+|+-||+=+
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v 29 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQL 29 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45679999999999999999555433
No 61
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=43.98 E-value=1.6e+02 Score=25.41 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (631)
Q Consensus 437 aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk 473 (631)
++-.+.+.+.++.+.+..+..+++++++|+..++..+
T Consensus 63 ~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 63 VLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444455555555555556666666666666543
No 62
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.85 E-value=1.7e+02 Score=26.33 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006784 455 VAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRD 534 (631)
Q Consensus 455 v~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrd 534 (631)
+..|+.+++.|+.+|.-++..++++ |...+...-+++..+...+++.|.+.+|...|+..
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~--------------------v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e 76 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRV--------------------VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAE 76 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666665555555432 22233334455555555556666666665555555
Q ss_pred hhh
Q 006784 535 AEH 537 (631)
Q Consensus 535 a~~ 537 (631)
++.
T Consensus 77 ~~~ 79 (120)
T 3i00_A 77 LDE 79 (120)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 63
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=40.58 E-value=4.2e+02 Score=29.42 Aligned_cols=67 Identities=16% Similarity=0.304 Sum_probs=58.2
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (631)
Q Consensus 342 dSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Erea 408 (631)
..|+..|...++.....++.-+..|..|-....+=-.+++.-++.||..+|.....--.+++.||++
T Consensus 145 ~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~ 211 (526)
T 3iyk_A 145 EKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDG 211 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4689999999999999999999999988666666666777779999999999999999999999887
No 64
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=39.06 E-value=35 Score=26.34 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=32.2
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHH
Q 006784 263 TISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAER 303 (631)
Q Consensus 263 ~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~ 303 (631)
-++.+-.|.+.|....+.|..|++-|--||+ |||+-.
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~----mLRqvl 40 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQ----MLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHh
Confidence 4567788999999999999999999999999 888753
No 65
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=38.88 E-value=2.4e+02 Score=26.04 Aligned_cols=55 Identities=16% Similarity=0.038 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQ 470 (631)
Q Consensus 416 amERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELq 470 (631)
.-+|...||.++.++.....-+.|+|++-.+|..-++..+.-++-.++.+-....
T Consensus 50 deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~ 104 (147)
T 2b9c_A 50 DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCA 104 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666665556666666555555555444444444444433333
No 66
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=38.57 E-value=1.9e+02 Score=24.91 Aligned_cols=99 Identities=10% Similarity=0.081 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 006784 433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN 512 (631)
Q Consensus 433 ALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~ie~~~~q~Eve~aR~~qreae~ 512 (631)
.|...++..+........+.+.+...+..+..|.+...+|...-.... +.|. .+..+..++.=+............
T Consensus 13 ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~---~~g~-~~~~l~~~~~fi~~L~~~I~~q~~ 88 (150)
T 3ajw_A 13 LKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDM---GNGI-ASNRWINYQQFIQTLEKAIEQHRL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--C---CSGG-GHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666667777766666664332221 1222 233444444445554444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 006784 513 KLSSLEAEVQKMRVEMAAMKRDA 535 (631)
Q Consensus 513 ~lss~~aElq~lr~E~a~lkrda 535 (631)
.+...+.+++.++..+....++.
T Consensus 89 ~l~~~~~~~e~~r~~l~~a~~~~ 111 (150)
T 3ajw_A 89 QLTQWTQKVDLALKSWREKKQRL 111 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444443
No 67
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.28 E-value=46 Score=30.93 Aligned_cols=72 Identities=22% Similarity=0.360 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006784 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE----MAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETM 567 (631)
Q Consensus 492 e~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E----~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQTqLEaL 567 (631)
++..|+.++...+.....+|.......+|++.|..- .-.|=.++ |..+..+|.|...|-.-|-.|.+-|+.|
T Consensus 47 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~a----r~~~~~~e~r~~~L~~ql~e~e~ll~~l 122 (135)
T 2e7s_A 47 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADA----RMEKYAIEILNKRLTEQLREKDMLLDTL 122 (135)
T ss_dssp HHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHHTTTHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678888888888888999999999999888654 33333333 5678889999999988888888888765
No 68
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=36.63 E-value=1.3e+02 Score=28.26 Aligned_cols=99 Identities=18% Similarity=0.297 Sum_probs=57.9
Q ss_pred hHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHh
Q 006784 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVA----------ERELSRSYEARIKQLEQELS 321 (631)
Q Consensus 252 ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~----------E~~~~~Sl~ar~k~lQ~ELs 321 (631)
-|.+||.|+|.-+.+-+.| ..-.+++...|+..+.-..-|.+||.+ +.+++..|-.+.+.+|.-+-
T Consensus 33 DL~~AN~LiK~m~~~d~~r----~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~ 108 (158)
T 1naf_A 33 DLRAANKLIKEMVQEDQKR----MEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLF 108 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHhccchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999764433 344455556788888888888889984 33556666666555555443
Q ss_pred hhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHH
Q 006784 322 VYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (631)
Q Consensus 322 ~ar~~v~k~EsdlteAlaAKdSqLavLkvrLdea 355 (631)
+.=....-=|.-|.+.|.+-| .|--+-.+|+..
T Consensus 109 ~Li~e~~ddee~L~elL~~ND-~Ln~vl~kY~~~ 141 (158)
T 1naf_A 109 RLASDTEDNDEALAEILQAND-NLTQVINLYKQL 141 (158)
T ss_dssp HHHHHCCSCHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHhhH-HHHHHHHHHHHH
Confidence 321111000234555555543 444444555443
No 69
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=36.50 E-value=3.7e+02 Score=30.04 Aligned_cols=102 Identities=16% Similarity=0.241 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTE---TRMIQALREELASVERRAEEERAAHNATKMAAMEREVELE 424 (631)
Q Consensus 348 LkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e---~qalqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE 424 (631)
|+.-|+..++-+ ...+++|....+.|.+++.+.. +.+++.||.++..+. .. ++ +..+.- -+||
T Consensus 51 LQglLdkqErDl---tkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dN----dN---tynE~S---~ELR 116 (562)
T 3ghg_A 51 MKGLIDEVNQDF---TNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NR----DN---TYNRVS---EDLR 116 (562)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HH----HH---HHHHTT---HHHH
T ss_pred hhhhHHhhcCcH---HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-cc----ch---hHHHHH---HHHH
Confidence 334444444443 4456667777888888888874 566677776665543 11 11 111111 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006784 425 HRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (631)
Q Consensus 425 ~q~aEastALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~ 477 (631)
++ +..=+.+++.-=++++.|+..++.+..+++-+++...
T Consensus 117 Rr--------------IqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 117 SR--------------IEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3333333333335667777777777777777666543
No 70
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=36.38 E-value=1.2e+02 Score=28.52 Aligned_cols=21 Identities=10% Similarity=0.098 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006784 453 QKVAMLEVECATLQQELQDME 473 (631)
Q Consensus 453 qqv~~lka~~esl~QELqDyk 473 (631)
.++..++++++.++.++..|+
T Consensus 67 a~l~~a~a~l~~a~~~~~r~~ 87 (277)
T 2f1m_A 67 GDLAKAQAAANIAQLTVNRYQ 87 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554444
No 71
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.27 E-value=2.2e+02 Score=25.94 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=5.3
Q ss_pred hhhhhhhhhhHHH
Q 006784 283 SRLQEYKSENAQL 295 (631)
Q Consensus 283 ~rLs~lr~EN~QL 295 (631)
++|-.++.++..|
T Consensus 68 dEl~k~~~~~~~L 80 (138)
T 3hnw_A 68 DDYFKAKKMADSL 80 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 72
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=35.87 E-value=65 Score=26.62 Aligned_cols=44 Identities=30% Similarity=0.427 Sum_probs=31.3
Q ss_pred CCCcchhhhHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 006784 244 DPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSEN 292 (631)
Q Consensus 244 ~~p~k~q~ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN 292 (631)
++|+.+|.=|+ +|.+..+-..|...|-+|-+.++.+|.-+..+.
T Consensus 7 Dgpit~qeyle-----vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~l 50 (63)
T 2w6a_A 7 DGAVTLQEYLE-----LKKALATSEAKVQQLMKVNSSLSDELRKLQREI 50 (63)
T ss_dssp CCSSCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHH-----HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHH
Confidence 57888886555 566666777788899999998888544443333
No 73
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.13 E-value=60 Score=25.45 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=15.5
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhH
Q 006784 258 GLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENA 293 (631)
Q Consensus 258 ~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~ 293 (631)
.+.|.-++-.+++..... -+..|..+...|..+|.
T Consensus 5 r~erNr~AA~k~R~rKk~-~~~~Le~~~~~L~~~n~ 39 (61)
T 1t2k_D 5 FLERNRAAASRSRQKRKV-WVQSLEKKAEDLSSLNG 39 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 344555555544433322 23344444444444444
No 74
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.93 E-value=64 Score=25.80 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=16.2
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 006784 266 TGQSKEARLARVCAGLSSRLQEYKSENAQLEELL 299 (631)
Q Consensus 266 ~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLL 299 (631)
.+..+...|...-..|..+++.|+.|+.+|-.||
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555444444
No 75
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=33.89 E-value=1.9e+02 Score=24.09 Aligned_cols=47 Identities=23% Similarity=0.423 Sum_probs=28.2
Q ss_pred hhhhhhhhhHHHHHHHH-HHHHH---hHHHHHHHHHHHHHHhhhhhhhhhh
Q 006784 284 RLQEYKSENAQLEELLV-AEREL---SRSYEARIKQLEQELSVYKSEVTKV 330 (631)
Q Consensus 284 rLs~lr~EN~QLEeLLr-~E~~~---~~Sl~ar~k~lQ~ELs~ar~~v~k~ 330 (631)
.|++++..|+.||.-|+ .|... +..+...+..+..+|..+|...++-
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888887777776 22221 4555555666666666665555443
No 76
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=33.54 E-value=1.2e+02 Score=24.34 Aligned_cols=68 Identities=18% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcccCCCchHHHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 465 LQQELQDMEARLKRGQKKSPEEANQAI--QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 532 (631)
Q Consensus 465 l~QELqDyk~KA~R~lkk~~E~agq~i--e~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lk 532 (631)
|..=|.|+...=..+..+.-.++-... .++.++..+.+-....+.+..++..++..+|.|+.||..+|
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 77
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.91 E-value=1.1e+02 Score=26.33 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006784 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (631)
Q Consensus 494 ~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~ 536 (631)
+.+++|+...|...-.++..|...++..+.+..||..++..++
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 78
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=31.52 E-value=1.2e+02 Score=29.32 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=12.8
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 006784 564 LETMASEKAAAEFQLEKEMNRLQEVQSEAE 593 (631)
Q Consensus 564 LEaLatEKaAlqlQLER~~~q~reaQ~e~e 593 (631)
++..-++....+.+|+....++..+++..+
T Consensus 116 ~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~ 145 (341)
T 3fpp_A 116 LDNAATEMAVKQAQIGTIDAQIKRNQASLD 145 (341)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444433
No 79
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.46 E-value=4.8e+02 Score=28.29 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=18.3
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHH
Q 006784 342 NSEIETLVSSIDALKKQAALSEGNLASL 369 (631)
Q Consensus 342 dSqLavLkvrLdeadq~l~~~~~~Leel 369 (631)
.+.|.+|..-++.....+..++.++..+
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777776666666666666544
No 80
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=31.19 E-value=3.5e+02 Score=25.76 Aligned_cols=85 Identities=12% Similarity=0.086 Sum_probs=61.7
Q ss_pred HHHHHhcccchhHHHH---HHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 334 LAEALAAKNSEIETLV---SSIDALKKQAALSEGNLASLQMNMESIMRNRELT--ETRMIQALREELASVERRAEEERAA 408 (631)
Q Consensus 334 lteAlaAKdSqLavLk---vrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~--e~qalqaLREeLa~AE~rL~~Erea 408 (631)
+..|+....+--.+++ ..|+.+|..+...+++|..+|...+.|--+..+- .-.+++.+|-++.++-+.+..--.+
T Consensus 50 Fqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~~A 129 (158)
T 3tul_A 50 FQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDA 129 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554455555666 8899999999999999999999888886665552 5788999999999999998877777
Q ss_pred HHHHHHHHHH
Q 006784 409 HNATKMAAME 418 (631)
Q Consensus 409 h~atr~aamE 418 (631)
|-.++..+.+
T Consensus 130 ~~~a~~~a~~ 139 (158)
T 3tul_A 130 TVKAGTDAKA 139 (158)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhHHHH
Confidence 7666665554
No 81
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=30.83 E-value=2.4e+02 Score=24.85 Aligned_cols=73 Identities=21% Similarity=0.213 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHhHH
Q 006784 507 QRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ------TQLETMASEKAAAEFQLEK 580 (631)
Q Consensus 507 qreae~~lss~~aElq~lr~E~a~lkrda~~~srq~~~ELE~RlrELTdlLy~KQ------TqLEaLatEKaAlqlQLER 580 (631)
-..++.+|...+..+..|+.+|+.++.+++..+- |..+. .|||- +-=|+|..||-.+.-+|+.
T Consensus 11 L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~v-----Lk~Qv------~IY~~DF~aERadREkl~~eKe~L~~ql~~ 79 (94)
T 3jsv_C 11 LQQAEEALVAKQELIDKLKEEAEQHKIVMETVPV-----LKAQA------DIYKADFQAERHAREKLVEKKEYLQEQLEQ 79 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH------HHHHHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3356667777777777777777666665543321 11111 11111 1235666666666666666
Q ss_pred HHHHHHHHHH
Q 006784 581 EMNRLQEVQS 590 (631)
Q Consensus 581 ~~~q~reaQ~ 590 (631)
...++..-..
T Consensus 80 lq~q~~~L~~ 89 (94)
T 3jsv_C 80 LQREFNKLKV 89 (94)
T ss_dssp HHHTTC----
T ss_pred HHHHHHHHHH
Confidence 6655544443
No 82
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=30.56 E-value=1.7e+02 Score=28.61 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhhhhhhhhh
Q 006784 312 RIKQLEQELSVYKSEVTKV 330 (631)
Q Consensus 312 r~k~lQ~ELs~ar~~v~k~ 330 (631)
.+...+.+|..++....+.
T Consensus 85 ~l~~a~~~~~~a~~~~~r~ 103 (369)
T 4dk0_A 85 QLVARKTAYDVALSNYQRL 103 (369)
T ss_dssp HHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555554444444
No 83
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=30.28 E-value=92 Score=27.92 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=26.7
Q ss_pred hhHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhH
Q 006784 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENA 293 (631)
Q Consensus 251 ~ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~ 293 (631)
++++++|..|+..-...-.+...|...+..|+.+-+.|+.||+
T Consensus 47 s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 47 SRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888877555555555565555555555555555554
No 84
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.95 E-value=3.2e+02 Score=24.88 Aligned_cols=11 Identities=0% Similarity=0.383 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 006784 463 ATLQQELQDME 473 (631)
Q Consensus 463 esl~QELqDyk 473 (631)
..+...+.++.
T Consensus 35 ~~vd~km~ei~ 45 (138)
T 3hnw_A 35 SYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 85
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=29.60 E-value=1.3e+02 Score=23.45 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (631)
Q Consensus 437 aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~ 474 (631)
|+|+-.--+..+.+|+.+|..++.+-..|..++..+..
T Consensus 13 A~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 13 ARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444577889999999999999999998887754
No 86
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=29.11 E-value=90 Score=24.61 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=21.0
Q ss_pred HHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhH
Q 006784 260 LKTTISTGQSKEARLARVCAGLSSRLQEYKSENA 293 (631)
Q Consensus 260 L~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~ 293 (631)
|+..+..+-.++.+|+..+...+..|..|+.+..
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666666666665554
No 87
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.51 E-value=64 Score=32.61 Aligned_cols=38 Identities=8% Similarity=0.166 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 532 (631)
Q Consensus 495 ~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lk 532 (631)
.++.++......-.-+...+..++.|+..|+.|+..|+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555444444455555555555555555555554
No 88
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.12 E-value=1.8e+02 Score=24.49 Aligned_cols=48 Identities=13% Similarity=0.270 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 006784 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSR 540 (631)
Q Consensus 493 ~~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lkrda~~~sr 540 (631)
++.|+.-+.......+.-+.-+..++++++..+.+|..|+..++-|.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666666666666677777888999999999999999998887654
No 89
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=28.03 E-value=1.9e+02 Score=26.41 Aligned_cols=98 Identities=17% Similarity=0.287 Sum_probs=58.6
Q ss_pred hHHHHhhhHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHh
Q 006784 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVA----------ERELSRSYEARIKQLEQELS 321 (631)
Q Consensus 252 ql~e~~~lL~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~----------E~~~~~Sl~ar~k~lQ~ELs 321 (631)
-|.+||.|+|.-+.+-+.| ..-.+++.+.|...+.-..-|.+||.+ ..+++..|-.+.+.+|.-+-
T Consensus 24 DL~~AN~LiK~m~~~d~~r----~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~ 99 (140)
T 1o3x_A 24 DLRAANKLIKEMVQEDQKR----MEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLF 99 (140)
T ss_dssp ---CCCSSTHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999764333 444455566788888888888889984 56777777777777766654
Q ss_pred hhhhhhhhhhhhHHHHHhcccchhHHHHHHHHH
Q 006784 322 VYKSEVTKVESNLAEALAAKNSEIETLVSSIDA 354 (631)
Q Consensus 322 ~ar~~v~k~EsdlteAlaAKdSqLavLkvrLde 354 (631)
+.=....-=|.-|.+.|.+-| .|--+-.+|+.
T Consensus 100 ~li~e~~ddee~l~elL~~ND-~ln~vl~kY~~ 131 (140)
T 1o3x_A 100 RLASDTEDNDEALAEILQAND-NLTQVINLYKQ 131 (140)
T ss_dssp HHHTTCTTCHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHhhH-HHHHHHHHHHH
Confidence 332111111234555555543 34444444443
No 90
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=26.88 E-value=6.7e+02 Score=27.61 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471 (631)
Q Consensus 432 tALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqD 471 (631)
.+|+..++.+.++..|...++++...++.....+.|-+..
T Consensus 480 ~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~ 519 (592)
T 1f5n_A 480 QTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQ 519 (592)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888777777665555554443
No 91
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.68 E-value=3.6e+02 Score=24.40 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=20.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006784 504 RQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (631)
Q Consensus 504 R~~qreae~~lss~~aElq~lr~E~a~lkrda~ 536 (631)
...-..+|..|.....++..|+.|++.++.+++
T Consensus 30 ~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE 62 (110)
T 2v4h_A 30 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVME 62 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345566666677777777777666666554
No 92
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=26.28 E-value=3.3e+02 Score=23.89 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=29.3
Q ss_pred HhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhh
Q 006784 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (631)
Q Consensus 338 laAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImq 378 (631)
|+++...|..|+..++...+-=......+.+++.++..|+.
T Consensus 63 L~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 63 LATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666777777777777777766677777777777777765
No 93
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.41 E-value=2.7e+02 Score=30.19 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhh
Q 006784 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (631)
Q Consensus 344 qLavLkvrLdeadq~l~~~~~~LeelQ~e~~RIm 377 (631)
..+.|+.+..+.+..++..+..+.+++.+...++
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777778888888888888877776655
No 94
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=24.62 E-value=6.6e+02 Score=26.72 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (631)
Q Consensus 431 stALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~ 474 (631)
...|-..++.++..=.....+-.+|..+..++..|.+-+++.-.
T Consensus 26 ~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~ 69 (409)
T 1m1j_C 26 ADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYP 69 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566677878777666666667777777777777777777633
No 95
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=24.62 E-value=3.9e+02 Score=24.14 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=39.0
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH 409 (631)
Q Consensus 342 dSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~rL~~Ereah 409 (631)
..+|-.|+++|..|...|........++..+..+.-.+- --|+.|+....-=...-..||.++
T Consensus 23 ~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l-----E~I~vLkaQv~IY~~DF~aERadR 85 (110)
T 2v4h_A 23 SMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM-----ETVPVLKAQADIYKADFQAERHAR 85 (110)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHccchhhH
Confidence 457888888888888888887777777755544411111 225566665555555555555553
No 96
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.92 E-value=1.3e+02 Score=25.41 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=23.0
Q ss_pred HHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHh
Q 006784 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (631)
Q Consensus 337 AlaAKdSqLavLkvrLdeadq~l~~~~~~LeelQ~e~~RI 376 (631)
+|--|+.+|.....++.+.+..+...+..+..|+.+.+.+
T Consensus 27 ~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 27 ALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333455555555556666666666666666666665554
No 97
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=23.16 E-value=3.9e+02 Score=23.57 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006784 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQK 454 (631)
Q Consensus 388 lqaLREeLa~AE~rL~~Ereah~atr~aamERE~eLE~q~aEastALa~aqR~~~E~k~Ka~eLeqq 454 (631)
|..=++.|..|+..+..+ .+..+|+=+- +.+|..++|++=.-.+..+..+++-+..+..|.++
T Consensus 31 l~~A~dKl~~A~~Am~~~--~y~~Ar~lAE--qAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqE 93 (98)
T 4fm3_A 31 LKLAQDKYAAAQIAMTAE--SYKKARLLAE--QAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQ 93 (98)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc--cHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777776432 2333443332 35677777777666555555555544444444433
No 98
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.98 E-value=4.4e+02 Score=24.18 Aligned_cols=79 Identities=20% Similarity=0.380 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHH-HH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006784 450 ELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI-QM-QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 527 (631)
Q Consensus 450 eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~agq~i-e~-~~~q~Eve~aR~~qreae~~lss~~aElq~lr~E 527 (631)
||++--..++.++.-++.=|.+.+.-|. .-|+-+ .+ ..|..+....+....+++.+|..+.+.|+++..|
T Consensus 22 ECrN~T~lLq~qLTqAQe~l~~~eaQAa--------TCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae 93 (121)
T 3mq7_A 22 EARNVTHLLQQELTEAQKGFQDVEAQAA--------TANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAE 93 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555554433 122222 22 2344444444445667777777788888888888
Q ss_pred HHHHHHhhh
Q 006784 528 MAAMKRDAE 536 (631)
Q Consensus 528 ~a~lkrda~ 536 (631)
++.||++..
T Consensus 94 ~erlr~~~~ 102 (121)
T 3mq7_A 94 VERLRRENQ 102 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhch
Confidence 888777765
No 99
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=22.97 E-value=47 Score=33.57 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=55.5
Q ss_pred HHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH--------HHHHHHhHHHHHHHHHHHHHHhhhhh
Q 006784 260 LKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELL--------VAERELSRSYEARIKQLEQELSVYKS 325 (631)
Q Consensus 260 L~~~~~~~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLL--------r~E~~~~~Sl~ar~k~lQ~ELs~ar~ 325 (631)
|...+++++.|...+-..+..|+++|.++-.+-.++|.|| ..-+.+..-=..+|..+|.=|..|+.
T Consensus 162 L~q~i~~ln~k~~~~E~si~~L~~qLeElv~~k~~~dqLi~~RD~~tR~~fv~LLNEKK~KIR~qqrlL~sa~i 235 (246)
T 1z56_A 162 LYKDICCVNDSYRNIKESDSSNRNRVEQLARERELLDKLLETRDERTRAMMVTLLNEKKKKIRELHEILRQNNI 235 (246)
T ss_dssp SGGGTTHHHHHHHHTTTTTTHHHHHHHHTTTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHGGGTTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 3458999999999999999999999999999999999999 66677777777778888877765543
No 100
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.81 E-value=55 Score=23.01 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006784 448 AGELEQKVAMLEVECATLQQ 467 (631)
Q Consensus 448 a~eLeqqv~~lka~~esl~Q 467 (631)
-+.|+|+++.+++..+||+|
T Consensus 9 ndaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 9 NDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHhcC
Confidence 35677777777777777764
No 101
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=22.61 E-value=2.3e+02 Score=25.39 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006784 433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (631)
Q Consensus 433 ALa~aqR~~~E~k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~ 479 (631)
+|..++..+...+..+.+|.+++..++..++.+.+|--=|=.|.+.|
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34458888888888999999999999999999998887787777765
No 102
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=22.57 E-value=2.5e+02 Score=21.83 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHH
Q 006784 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (631)
Q Consensus 545 ELE~RlrELTdlLy~KQTqLEaLatEKaAlqlQLER~~~q~ 585 (631)
+||.++..|.-+|=.=||-+-+|-+|+.+.|-.|..-+..+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999999999999999988766544
No 103
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=22.43 E-value=3.5e+02 Score=22.76 Aligned_cols=74 Identities=24% Similarity=0.408 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHH--HHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 006784 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN--QAI--QMQAWQDEVERARQGQRDAENKLSSLEAEV 521 (631)
Q Consensus 446 ~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~ag--q~i--e~~~~q~Eve~aR~~qreae~~lss~~aEl 521 (631)
+++..+...=..+..++..++-.+.||+.|-. ++.+ +.+ ++..++..|+.+- -....++.++
T Consensus 7 ~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE-------~E~~~R~~~E~d~~~LrkdvD~a~-------l~r~dLE~kv 72 (86)
T 3swk_A 7 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQ-------EEMLQREEAENTLQSFRQDVDNAS-------LARLDLERKV 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTTHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHH
Confidence 44455555555677788888888888888766 2222 222 3444555555433 3444466677
Q ss_pred HHHHHHHHHHHH
Q 006784 522 QKMRVEMAAMKR 533 (631)
Q Consensus 522 q~lr~E~a~lkr 533 (631)
+.|..||.+||.
T Consensus 73 esL~eEl~fLkk 84 (86)
T 3swk_A 73 ESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 777888888764
No 104
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=22.18 E-value=4.3e+02 Score=24.30 Aligned_cols=27 Identities=26% Similarity=0.275 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 006784 266 TGQSKEARLARVCAGLSSRLQEYKSEN 292 (631)
Q Consensus 266 ~~~~ke~rL~rv~~qls~rLs~lr~EN 292 (631)
.++.|.+.|..-++.+.+.|..+.-++
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d 36 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESE 36 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 445666666666666666665555444
No 105
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.12 E-value=2.4e+02 Score=22.97 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHh
Q 006784 267 GQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELS 306 (631)
Q Consensus 267 ~~~ke~rL~rv~~qls~rLs~lr~EN~QLEeLLr~E~~~~ 306 (631)
|...|..|.-++-.|+-.+++|+.||.++-.-|--|...-
T Consensus 1 ~~veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkAR 40 (56)
T 2w6b_A 1 GPLGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRAR 40 (56)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999999997776666655543
No 106
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.87 E-value=2.9e+02 Score=21.62 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 400 RRAEEERAAHNATKMAAMEREVELEHR 426 (631)
Q Consensus 400 ~rL~~Ereah~atr~aamERE~eLE~q 426 (631)
++..+=+.|-..+|.-+.++..+||..
T Consensus 4 rrr~rNr~AA~k~R~rKk~~~~~Le~~ 30 (62)
T 1jnm_A 4 RKRMRNRIAASKSRKRKLERIARLEEK 30 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555554444444
No 107
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=21.83 E-value=2.5e+02 Score=24.26 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=25.1
Q ss_pred HHHHHhhhhhhhhhhhhhhHHHHHHHHH
Q 006784 274 LARVCAGLSSRLQEYKSENAQLEELLVA 301 (631)
Q Consensus 274 L~rv~~qls~rLs~lr~EN~QLEeLLr~ 301 (631)
..++++....||..||...+++|..|..
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s 37 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLAT 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578889999999999999999999985
No 108
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.38 E-value=1.4e+02 Score=25.13 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchH
Q 006784 445 TAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEE 486 (631)
Q Consensus 445 k~Ka~eLeqqv~~lka~~esl~QELqDyk~KA~R~lkk~~E~ 486 (631)
..+...++..++.++..+..+..++.+++......++++|.|
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~~~~~ 117 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRPPTAG 117 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
No 109
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.82 E-value=3.9e+02 Score=22.75 Aligned_cols=36 Identities=14% Similarity=0.315 Sum_probs=17.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006784 497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 532 (631)
Q Consensus 497 q~Eve~aR~~qreae~~lss~~aElq~lr~E~a~lk 532 (631)
+.++..+|.....+......+.-++..|..++..+|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444445555555444444
No 110
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=20.64 E-value=3.3e+02 Score=21.76 Aligned_cols=55 Identities=9% Similarity=0.273 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 006784 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400 (631)
Q Consensus 345 LavLkvrLdeadq~l~~~~~~LeelQ~e~~RImqdh~~~e~qalqaLREeLa~AE~ 400 (631)
|+.|..++......+......++.+....+.+.+.+... -+.|.+|..++..-++
T Consensus 8 ~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d-~~~Ie~Le~kv~~l~~ 62 (65)
T 3m0d_C 8 LAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLD-RERILSLEQRVVELQQ 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHh
Confidence 444555566666666666666666666666666555554 4556666555554443
No 111
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=20.19 E-value=5.5e+02 Score=24.17 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=25.6
Q ss_pred hhhHHHHhhhHHHhhhhhhhHHHHHHHHH--hhhhhhhhhhhh
Q 006784 250 QDQLDEAQGLLKTTISTGQSKEARLARVC--AGLSSRLQEYKS 290 (631)
Q Consensus 250 q~ql~e~~~lL~~~~~~~~~ke~rL~rv~--~qls~rLs~lr~ 290 (631)
+.|++.....+...++..+.-...+..-+ ..+...+..+..
T Consensus 23 ~s~~e~v~~~~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~ 65 (191)
T 1nfn_A 23 GQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMD 65 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 45888888888888888766655555544 344444433333
Done!