Query 006786
Match_columns 631
No_of_seqs 537 out of 3548
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 14:28:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02125 PA_VSR PA_VSR: Proteas 99.9 2.5E-27 5.5E-32 212.2 14.3 127 54-181 1-127 (127)
2 cd02123 PA_C_RZF_like PA_C-RZF 99.9 3.3E-22 7.2E-27 185.6 14.3 121 46-176 22-142 (153)
3 cd02126 PA_EDEM3_like PA_EDEM3 99.9 3.7E-22 8E-27 179.4 13.3 118 50-181 2-126 (126)
4 cd02127 PA_hPAP21_like PA_hPAP 99.9 7E-22 1.5E-26 174.8 13.6 114 54-182 1-117 (118)
5 cd02122 PA_GRAIL_like PA _GRAI 99.9 9.6E-22 2.1E-26 178.6 14.0 115 51-181 18-138 (138)
6 cd02132 PA_GO-like PA_GO-like: 99.9 2.7E-21 5.8E-26 176.8 13.7 121 45-181 16-139 (139)
7 cd04813 PA_1 PA_1: Protease-as 99.8 2.7E-19 5.8E-24 157.9 11.4 105 51-173 6-111 (117)
8 cd02129 PA_hSPPL_like PA_hSPPL 99.8 3.3E-19 7.2E-24 156.5 11.4 93 72-180 27-119 (120)
9 cd04816 PA_SaNapH_like PA_SaNa 99.8 2.3E-18 4.9E-23 154.5 13.8 116 53-181 6-122 (122)
10 KOG1214 Nidogen and related ba 99.8 6.5E-19 1.4E-23 189.9 11.8 189 352-564 666-866 (1289)
11 cd02130 PA_ScAPY_like PA_ScAPY 99.7 2.1E-17 4.6E-22 148.3 12.8 103 62-181 20-122 (122)
12 cd04818 PA_subtilisin_1 PA_sub 99.7 4.2E-17 9.2E-22 145.5 13.4 113 52-181 2-118 (118)
13 KOG3920 Uncharacterized conser 99.7 4.9E-18 1.1E-22 149.8 5.2 132 35-181 34-171 (193)
14 cd02124 PA_PoS1_like PA_PoS1_l 99.7 3.2E-16 7E-21 140.9 12.2 92 72-181 38-129 (129)
15 cd04817 PA_VapT_like PA_VapT_l 99.7 5.5E-16 1.2E-20 140.1 12.6 104 55-177 27-137 (139)
16 KOG4628 Predicted E3 ubiquitin 99.7 4.3E-16 9.3E-21 158.9 13.0 115 47-174 35-150 (348)
17 KOG2442 Uncharacterized conser 99.5 2.5E-14 5.5E-19 148.2 10.1 174 48-243 55-249 (541)
18 PF02225 PA: PA domain; Inter 99.5 2.9E-14 6.3E-19 123.4 5.5 68 96-171 34-101 (101)
19 cd00538 PA PA: Protease-associ 99.5 1.7E-13 3.6E-18 123.7 10.6 98 72-181 27-126 (126)
20 KOG1219 Uncharacterized conser 99.5 9.2E-14 2E-18 161.9 8.6 104 421-553 3865-3972(4289)
21 cd02133 PA_C5a_like PA_C5a_lik 99.4 2.7E-12 5.8E-17 118.5 12.5 107 53-182 15-121 (143)
22 cd04819 PA_2 PA_2: Protease-as 99.4 6.4E-12 1.4E-16 113.4 12.2 105 61-180 20-126 (127)
23 cd04815 PA_M28_2 PA_M28_2: Pro 99.3 1.3E-11 2.9E-16 112.2 8.4 111 55-181 8-134 (134)
24 cd02120 PA_subtilisin_like PA_ 99.1 3.8E-10 8.2E-15 101.8 10.1 85 74-176 36-121 (126)
25 cd02128 PA_TfR PA_TfR: Proteas 99.0 2.3E-09 5E-14 101.2 9.5 123 53-184 18-163 (183)
26 KOG1214 Nidogen and related ba 99.0 2.2E-09 4.7E-14 117.4 10.4 117 383-519 744-864 (1289)
27 KOG4289 Cadherin EGF LAG seven 98.7 3.9E-08 8.4E-13 112.6 9.8 102 378-509 1204-1308(2531)
28 PF07645 EGF_CA: Calcium-bindi 98.6 3.1E-08 6.8E-13 70.8 3.4 41 520-561 1-42 (42)
29 cd02121 PA_GCPII_like PA_GCPII 98.6 3.1E-07 6.8E-12 89.8 10.1 120 62-199 43-207 (220)
30 KOG1219 Uncharacterized conser 98.5 1.5E-07 3.3E-12 111.7 6.4 102 383-514 3870-3975(4289)
31 KOG4289 Cadherin EGF LAG seven 98.4 2.1E-07 4.6E-12 106.8 5.2 98 444-566 1218-1320(2531)
32 cd04822 PA_M28_1_3 PA_M28_1_3: 98.4 2.1E-06 4.6E-11 79.0 10.9 96 62-172 18-133 (151)
33 PF07645 EGF_CA: Calcium-bindi 98.3 5.4E-07 1.2E-11 64.4 3.9 42 419-468 1-42 (42)
34 cd04814 PA_M28_1 PA_M28_1: Pro 98.3 2.2E-06 4.9E-11 77.9 7.9 71 51-130 10-100 (142)
35 cd04820 PA_M28_1_1 PA_M28_1_1: 98.2 6.3E-06 1.4E-10 74.5 7.8 64 61-130 19-96 (137)
36 KOG4260 Uncharacterized conser 98.1 3.3E-06 7.2E-11 82.2 5.5 57 496-554 211-269 (350)
37 cd02131 PA_hNAALADL2_like PA_h 98.0 1.2E-05 2.6E-10 73.0 7.0 105 60-172 11-138 (153)
38 KOG1217 Fibrillins and related 98.0 3.9E-05 8.4E-10 84.8 10.8 149 392-557 148-306 (487)
39 PF14670 FXa_inhibition: Coagu 97.9 7.5E-06 1.6E-10 55.9 2.7 31 528-561 6-36 (36)
40 KOG4260 Uncharacterized conser 97.8 1.7E-05 3.7E-10 77.3 4.4 88 445-553 214-304 (350)
41 PF14670 FXa_inhibition: Coagu 97.8 1.5E-05 3.2E-10 54.4 2.7 36 423-468 1-36 (36)
42 PF06247 Plasmod_Pvs28: Plasmo 97.8 2.3E-05 4.9E-10 72.9 4.3 137 395-562 19-169 (197)
43 KOG1217 Fibrillins and related 97.8 0.0001 2.2E-09 81.5 10.3 150 387-565 243-401 (487)
44 PF12947 EGF_3: EGF domain; I 97.6 4.2E-05 9.1E-10 52.3 2.3 31 528-561 6-36 (36)
45 smart00179 EGF_CA Calcium-bind 97.5 0.00012 2.6E-09 51.0 3.9 38 520-561 1-38 (39)
46 PF12947 EGF_3: EGF domain; I 97.4 0.00013 2.8E-09 49.9 2.9 36 423-468 1-36 (36)
47 PF02128 Peptidase_M36: Fungal 97.2 7.6E-05 1.6E-09 78.0 -0.7 148 195-365 192-356 (378)
48 PF12662 cEGF: Complement Clr- 97.1 0.00025 5.4E-09 43.6 1.5 22 447-471 1-22 (24)
49 PF12662 cEGF: Complement Clr- 96.9 0.00082 1.8E-08 41.3 2.4 23 543-565 1-23 (24)
50 smart00179 EGF_CA Calcium-bind 96.6 0.0019 4.2E-08 44.7 2.9 33 419-459 1-33 (39)
51 cd00054 EGF_CA Calcium-binding 96.6 0.0029 6.3E-08 43.3 3.8 34 520-554 1-34 (38)
52 cd01475 vWA_Matrilin VWA_Matri 96.5 0.0021 4.7E-08 63.9 3.7 39 518-559 184-223 (224)
53 PF00008 EGF: EGF-like domain 96.3 0.0027 5.8E-08 42.3 2.1 29 524-554 1-30 (32)
54 smart00181 EGF Epidermal growt 95.6 0.016 3.5E-07 39.1 3.6 30 524-555 2-31 (35)
55 cd00053 EGF Epidermal growth f 95.5 0.02 4.3E-07 38.4 3.7 26 529-555 7-32 (36)
56 cd01475 vWA_Matrilin VWA_Matri 94.9 0.017 3.6E-07 57.5 2.7 43 409-464 180-222 (224)
57 PF06247 Plasmod_Pvs28: Plasmo 94.8 0.045 9.7E-07 51.4 4.9 97 439-553 11-119 (197)
58 PHA03099 epidermal growth fact 94.6 0.052 1.1E-06 47.5 4.4 38 520-563 41-82 (139)
59 PF00008 EGF: EGF-like domain 94.4 0.031 6.8E-07 37.1 2.1 18 437-454 8-26 (32)
60 cd04821 PA_M28_1_2 PA_M28_1_2: 94.3 0.064 1.4E-06 50.0 4.7 35 96-130 50-103 (157)
61 cd00054 EGF_CA Calcium-binding 93.9 0.053 1.1E-06 36.8 2.6 29 420-454 2-30 (38)
62 KOG1225 Teneurin-1 and related 93.6 0.21 4.6E-06 55.1 7.9 37 502-554 327-363 (525)
63 KOG1225 Teneurin-1 and related 92.5 0.28 6.1E-06 54.2 6.9 11 504-514 355-365 (525)
64 KOG0994 Extracellular matrix g 90.8 0.31 6.6E-06 57.1 5.0 59 501-563 840-908 (1758)
65 PF12946 EGF_MSP1_1: MSP1 EGF 90.7 0.15 3.2E-06 34.8 1.5 30 524-555 2-32 (37)
66 cd00053 EGF Epidermal growth f 89.9 0.29 6.2E-06 32.5 2.4 20 437-458 10-29 (36)
67 KOG1226 Integrin beta subunit 89.4 5.6 0.00012 45.5 13.2 13 161-173 153-165 (783)
68 smart00181 EGF Epidermal growt 88.4 0.4 8.7E-06 32.1 2.3 24 428-459 6-29 (35)
69 KOG0994 Extracellular matrix g 84.3 1.5 3.3E-05 51.7 5.4 46 400-454 846-892 (1758)
70 PF12661 hEGF: Human growth fa 83.2 0.62 1.4E-05 24.3 0.9 12 503-514 1-12 (13)
71 PF12955 DUF3844: Domain of un 81.2 1.8 3.9E-05 37.1 3.4 45 521-566 5-64 (103)
72 PF09064 Tme5_EGF_like: Thromb 72.6 3.2 6.9E-05 27.7 2.0 25 529-557 7-31 (34)
73 PF07974 EGF_2: EGF-like domai 70.6 6.5 0.00014 26.1 3.2 22 529-553 7-28 (32)
74 PF12946 EGF_MSP1_1: MSP1 EGF 68.3 4.9 0.00011 27.6 2.3 25 437-463 9-34 (37)
75 PTZ00214 high cysteine membran 61.8 4.8 0.0001 47.5 2.1 23 542-566 749-771 (800)
76 PF09064 Tme5_EGF_like: Thromb 61.3 7.5 0.00016 26.0 2.0 19 496-514 12-30 (34)
77 PF07172 GRP: Glycine rich pro 60.4 4.6 9.9E-05 34.3 1.2 25 1-27 1-25 (95)
78 KOG1025 Epidermal growth facto 57.6 1.4E+02 0.0029 35.5 12.3 19 496-514 558-579 (1177)
79 KOG2195 Transferrin receptor a 57.0 11 0.00025 43.5 4.1 35 95-129 184-218 (702)
80 PF01683 EB: EB module; Inter 56.8 18 0.00039 26.6 3.8 26 524-554 22-47 (52)
81 PF12191 stn_TNFRSF12A: Tumour 54.0 4.4 9.5E-05 35.7 0.1 10 505-514 35-44 (129)
82 PF00954 S_locus_glycop: S-loc 53.9 12 0.00025 32.5 2.8 33 520-554 76-108 (110)
83 PHA02887 EGF-like protein; Pro 53.4 11 0.00025 32.7 2.4 25 494-521 97-124 (126)
84 PF12273 RCR: Chitin synthesis 50.4 5.6 0.00012 35.8 0.2 27 573-599 2-28 (130)
85 KOG1215 Low-density lipoprotei 50.2 19 0.00041 43.4 4.7 72 474-558 326-400 (877)
86 PHA03099 epidermal growth fact 47.0 14 0.00031 32.7 2.1 21 494-514 56-79 (139)
87 KOG1226 Integrin beta subunit 46.9 34 0.00073 39.4 5.6 45 503-553 567-615 (783)
88 PTZ00382 Variant-specific surf 46.4 8.3 0.00018 32.8 0.6 15 547-563 41-55 (96)
89 COG5540 RING-finger-containing 43.5 6.7 0.00014 39.8 -0.5 35 98-132 149-183 (374)
90 cd04727 pdxS PdxS is a subunit 42.2 40 0.00087 34.4 4.8 69 107-178 16-91 (283)
91 PF05984 Cytomega_UL20A: Cytom 39.8 32 0.0007 27.9 2.9 34 7-42 3-36 (100)
92 cd03023 DsbA_Com1_like DsbA fa 39.2 50 0.0011 29.6 4.7 76 304-390 68-143 (154)
93 PHA02887 EGF-like protein; Pro 38.0 30 0.00066 30.2 2.7 37 521-563 83-123 (126)
94 KOG3512 Netrin, axonal chemotr 37.8 64 0.0014 35.1 5.6 15 501-515 370-385 (592)
95 cd03029 GRX_hybridPRX5 Glutare 36.8 84 0.0018 24.5 5.1 57 97-162 2-59 (72)
96 PF02009 Rifin_STEVOR: Rifin/s 35.2 33 0.00071 35.6 3.0 26 581-606 266-291 (299)
97 KOG3516 Neurexin IV [Signal tr 34.0 32 0.00069 41.5 2.9 41 517-563 541-582 (1306)
98 TIGR00343 pyridoxal 5'-phospha 33.3 34 0.00074 35.0 2.7 54 107-163 18-77 (287)
99 COG4736 CcoQ Cbb3-type cytochr 33.1 33 0.00071 26.4 1.9 43 576-622 12-54 (60)
100 KOG1836 Extracellular matrix g 32.2 63 0.0014 41.4 5.3 55 496-554 749-808 (1705)
101 TIGR01477 RIFIN variant surfac 32.2 34 0.00073 36.1 2.5 26 582-607 321-346 (353)
102 PTZ00046 rifin; Provisional 30.9 36 0.00077 36.0 2.5 25 583-607 327-351 (358)
103 COG4882 Predicted aminopeptida 28.4 3E+02 0.0064 29.3 8.4 80 96-183 90-171 (486)
104 PRK01844 hypothetical protein; 28.1 72 0.0016 25.5 3.1 24 589-612 20-50 (72)
105 KOG1215 Low-density lipoprotei 27.7 73 0.0016 38.5 4.8 72 420-514 325-398 (877)
106 PF01826 TIL: Trypsin Inhibito 27.6 40 0.00088 25.0 1.7 24 501-524 32-55 (55)
107 PF04478 Mid2: Mid2 like cell 27.1 12 0.00026 34.4 -1.5 14 592-605 73-86 (154)
108 cd03028 GRX_PICOT_like Glutare 27.1 1.4E+02 0.0029 24.7 5.0 71 96-174 8-87 (90)
109 PF01680 SOR_SNZ: SOR/SNZ fami 26.9 20 0.00044 33.8 -0.1 63 107-172 22-93 (208)
110 PF00954 S_locus_glycop: S-loc 22.8 80 0.0017 27.2 2.9 31 474-512 78-108 (110)
111 KOG0196 Tyrosine kinase, EPH ( 20.8 88 0.0019 36.6 3.3 49 503-552 260-316 (996)
112 COG0214 SNZ1 Pyridoxine biosyn 20.3 54 0.0012 32.4 1.4 64 106-172 27-99 (296)
113 KOG3514 Neurexin III-alpha [Si 20.1 64 0.0014 38.7 2.1 36 523-564 625-661 (1591)
No 1
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.95 E-value=2.5e-27 Score=212.24 Aligned_cols=127 Identities=65% Similarity=1.100 Sum_probs=106.9
Q ss_pred ccCCCCCCCCceeeEEccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEECCCCCc
Q 006786 54 NFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEAL 133 (631)
Q Consensus 54 ~FG~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~~~~ 133 (631)
|||.++||+++.|.|++|+++.+||++++....+.+.++...++||||+||+|+|.+|++|||++||+||||||+.++++
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 80 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL 80 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 79999999999999999989999999997643222223345589999999999999999999999999999999998878
Q ss_pred eecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcCCCeEEEEE
Q 006786 134 ITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (631)
Q Consensus 134 ~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l 181 (631)
+.|..+.++. +.++..+|+||++||++++|+.|+++|++|..|+|+|
T Consensus 81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 8886544321 1134567899999999999999999999999999875
No 2
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.88 E-value=3.3e-22 Score=185.63 Aligned_cols=121 Identities=33% Similarity=0.469 Sum_probs=101.2
Q ss_pred ccccccccccCCCCCCCCceeeEEccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEE
Q 006786 46 GSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLV 125 (631)
Q Consensus 46 ~~~~~~~a~FG~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi 125 (631)
..|++.+|.||.+++++.++|.|++ ++|.+||+++.++. + ......++|+||+||+|+|.+|++|||++||+||||
T Consensus 22 ~~~~~~~A~FG~~~~~~~~~g~lv~-~~p~~gC~~~~~~~--~-~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII 97 (153)
T cd02123 22 DEFDDLPANFGPIPPGSGLKGVLVV-AEPLNACSPIENPP--L-NSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIV 97 (153)
T ss_pred ceEeeecccCCCCCCCCceEEEEEe-CCccccCCCCcccc--c-ccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEE
Confidence 3588999999999999999999887 67899999998632 0 012223899999999999999999999999999999
Q ss_pred EECCCCCceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcCCCe
Q 006786 126 ADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEM 176 (631)
Q Consensus 126 ~n~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~ 176 (631)
||+.++.+..|...+.+ ..+++||+++|++++|+.|+++++.++.
T Consensus 98 ~n~~~~~~~~m~~~~~~------~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 98 YNDESNDLISMSGNDQE------IKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred EECCCCcceeccCCCCC------CcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 99988777778643221 2478999999999999999999998876
No 3
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.88 E-value=3.7e-22 Score=179.38 Aligned_cols=118 Identities=27% Similarity=0.439 Sum_probs=96.0
Q ss_pred ccccccCCCCCCC-CceeeEEccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEEC
Q 006786 50 SAIGNFGIPQYGG-SMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADD 128 (631)
Q Consensus 50 ~~~a~FG~~~~~~-~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~ 128 (631)
..+|.||.+.+.. .+.|.|+. ++|.+||+++.++. +++ ++|+||+||+|+|.+|+++||+|||+||||+|+
T Consensus 2 ~~pa~FG~~~~~~~~~~g~l~~-~~p~~gC~~~~~~~-~~~------gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~ 73 (126)
T cd02126 2 AGPAQFGMDLTGDKAGVGRVVK-AKPYRACSEITNAE-EVK------GKIAIMERGDCMFVEKARRVQKAGAIGGIVIDN 73 (126)
T ss_pred CCCcccCCcCCCCCCceEEEEe-CCchhcccCCCCcc-ccC------ceEEEEECCCCcHHHHHHHHHHCCCcEEEEEEC
Confidence 3578899888864 68999887 66789999987632 343 899999999999999999999999999999998
Q ss_pred CCC------CceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcCCCeEEEEE
Q 006786 129 IEE------ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (631)
Q Consensus 129 ~~~------~~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l 181 (631)
.++ .++.|....+ ..+.++||+++|++++|+.|+++|+++.+|++.|
T Consensus 74 ~~~~~~~~~~~~~m~~~~~------~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~~ 126 (126)
T cd02126 74 NEGSSSDTAPMFAMSGDGD------STDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126 (126)
T ss_pred CCCccccccceeEeecCCC------CCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEeC
Confidence 765 2455643211 1236899999999999999999999998888764
No 4
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.88 E-value=7e-22 Score=174.77 Aligned_cols=114 Identities=25% Similarity=0.340 Sum_probs=93.6
Q ss_pred ccCCCCCCCCceeeEEccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEECCCC--
Q 006786 54 NFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEE-- 131 (631)
Q Consensus 54 ~FG~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~~-- 131 (631)
.||.+..+..+.|.|+. ++|.+||++..+. .+++ ++|+||+||+|+|.+|+++||++||+||||||+..+
T Consensus 1 ~~~~~~~~~~~~~~lv~-~~p~~gC~~~~~~-~~~~------g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 72 (118)
T cd02127 1 DFGTIFNTRYKHVPLVP-ADPLEACEELRNI-HDIN------GNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSD 72 (118)
T ss_pred CCCccccccccceEEEE-CCccccCCCCCCc-cccC------CeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 48888888888888866 6789999987653 2443 899999999999999999999999999999998754
Q ss_pred -CceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcCCCeEEEEEE
Q 006786 132 -ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLD 182 (631)
Q Consensus 132 -~~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l~ 182 (631)
..+.|... +...+++||+++|++++|+.|++++++|..|++.|.
T Consensus 73 ~~~~~m~~~-------~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 73 EYYVEMIQD-------DSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred ccceEecCC-------CCCCCceEEEEEecHHHHHHHHHHHHcCCceEEeee
Confidence 34556432 123478999999999999999999999998877654
No 5
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.87 E-value=9.6e-22 Score=178.64 Aligned_cols=115 Identities=23% Similarity=0.338 Sum_probs=95.8
Q ss_pred cccccCCCCCCCCceeeEEc--cCCCcCCCCCCCC--CCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEE
Q 006786 51 AIGNFGIPQYGGSMAGAVTY--PKENRKGCREFGD--FGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVA 126 (631)
Q Consensus 51 ~~a~FG~~~~~~~~~g~l~~--~~~~~~gC~~~~~--~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~ 126 (631)
.+|.||...+...+.|.|++ ++.+.+||+++++ ...++ .++||||+||+|+|.+|++|||++||++||||
T Consensus 18 ~~a~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~~~~~~~------~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIy 91 (138)
T cd02122 18 ESGRYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRFPIPPNG------EPWIALIQRGNCTFEEKIKLAAERNASAVVIY 91 (138)
T ss_pred cccccCCCCCCCccEEEEecCCCCCCcCCCCCCccccCCccC------CCeEEEEECCCCCHHHHHHHHHHCCCcEEEEE
Confidence 47999999999999999764 4567899999976 22223 38999999999999999999999999999999
Q ss_pred ECCC--CCceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcCCCeEEEEE
Q 006786 127 DDIE--EALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (631)
Q Consensus 127 n~~~--~~~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l 181 (631)
|+.+ +.++.|.... ...||+++|++++|+.|++++++|.+|+|++
T Consensus 92 n~~~~~~~~~~m~~~~----------~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 92 NNPGTGNETVKMSHPG----------TGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred ECCCCCCceeeccCCC----------CCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 9986 2356664221 3479999999999999999999999888864
No 6
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.86 E-value=2.7e-21 Score=176.84 Aligned_cols=121 Identities=29% Similarity=0.406 Sum_probs=98.2
Q ss_pred cccccccccccCCCCCC---CCceeeEEccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCc
Q 006786 45 KGSHDSAIGNFGIPQYG---GSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGAS 121 (631)
Q Consensus 45 ~~~~~~~~a~FG~~~~~---~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~ 121 (631)
...|...+|.||..++. ..+.+.++. +++.+||+++++ +++ ++|+||+||+|+|.+|++|||++||+
T Consensus 16 ~~~~~~~~a~FG~~~p~~~~~~~~~~lv~-~~~~~gC~~~~~---~~~------g~IvLV~RG~C~F~~K~~nA~~aGA~ 85 (139)
T cd02132 16 GDELVGVTARFGASLPSKEDNANKTRAVL-ANPLDCCSPSTS---KLS------GSIALVERGECAFTEKAKIAEAGGAS 85 (139)
T ss_pred ccEEEeeccccCCCCCCcccCccEEEEEE-CCcccccCCCCc---ccC------CeEEEEECCCCCHHHHHHHHHHcCCc
Confidence 34688999999987654 356777766 577899999864 444 89999999999999999999999999
Q ss_pred EEEEEECCCCCceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcCCCeEEEEE
Q 006786 122 AVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (631)
Q Consensus 122 avIi~n~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l 181 (631)
+|||||+.++ ++.|....+ +....+.||+++|++++|+.|+++|++|..|++++
T Consensus 86 avIv~n~~~~-~~~~~~~~~-----~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~~ 139 (139)
T cd02132 86 ALLIINDQEE-LYKMVCEDN-----DTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139 (139)
T ss_pred EEEEEECCCc-ccccccCCC-----CCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEeC
Confidence 9999998754 455643322 11236899999999999999999999999888764
No 7
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.80 E-value=2.7e-19 Score=157.92 Aligned_cols=105 Identities=29% Similarity=0.346 Sum_probs=83.1
Q ss_pred cccccCCCCCCCCceeeEEccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEECCC
Q 006786 51 AIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIE 130 (631)
Q Consensus 51 ~~a~FG~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~ 130 (631)
..|.||++ +...+++.. ..+|.+||++++. .+++ ++||||+||+|+|.+|++|||++||++|||||+.+
T Consensus 6 ~~~~~~~~-~~~~~~~~~--~~~p~~gC~~~~~--~~l~------gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~ 74 (117)
T cd04813 6 RYASFSPI-LNPHLRGSY--KVSPTDACSLQEH--AEID------GKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEP 74 (117)
T ss_pred cccccCCc-cCccccccc--cCCCCCCCCCCCc--CCcC------CeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 45789954 444566653 3788999998843 2444 89999999999999999999999999999999886
Q ss_pred C-CceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcC
Q 006786 131 E-ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSG 173 (631)
Q Consensus 131 ~-~~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~ 173 (631)
+ .++.|..+. ....++||+++|++++|+.|++++.+
T Consensus 75 ~~~~~~m~~~~-------~~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 75 GRGLITMFSNG-------DTDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred cccceecccCC-------CCCCcEEEEEEEcHHHHHHHHHhccc
Confidence 4 455665322 13478999999999999999988754
No 8
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.80 E-value=3.3e-19 Score=156.51 Aligned_cols=93 Identities=24% Similarity=0.232 Sum_probs=73.5
Q ss_pred CCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEECCCCCceecCCCCCccccccccCc
Q 006786 72 KENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIEN 151 (631)
Q Consensus 72 ~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~~~~~~m~~~~~~~~~~~~~~~ 151 (631)
.+|..||++.+....+++ ++|+||+||+|+|.+|++|||++||+|||||||.+.. .+.. ..+...+
T Consensus 27 ~~~~~gC~~~~~~~~~l~------gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~--~~~~------~~~~~~~ 92 (120)
T cd02129 27 LTSSVLCSASDVPPGGLK------GKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLV--PPSG------NRSEYEK 92 (120)
T ss_pred CCCcCCCCccccCccccC------CeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCC--CCCC------CCCCCcC
Confidence 578899998876433444 8999999999999999999999999999999997532 1111 1122357
Q ss_pred ccccEEEEcHHHHHHHHHHHcCCCeEEEE
Q 006786 152 ITIPSALIDKSFGETLKKALSGGEMVNVN 180 (631)
Q Consensus 152 i~IP~~~i~~~~G~~l~~~l~~~~~v~v~ 180 (631)
++||++||++++|++|++++.++ |+|.
T Consensus 93 v~IP~v~Is~~dG~~i~~~l~~~--~~v~ 119 (120)
T cd02129 93 IDIPVALLSYKDMLDIQQTFGDS--VKVA 119 (120)
T ss_pred CcccEEEEeHHHHHHHHHHhccC--cEEe
Confidence 89999999999999999999865 4443
No 9
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.78 E-value=2.3e-18 Score=154.49 Aligned_cols=116 Identities=25% Similarity=0.361 Sum_probs=90.8
Q ss_pred cccCCCCCCCCceeeEEccCC-CcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEECCCC
Q 006786 53 GNFGIPQYGGSMAGAVTYPKE-NRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEE 131 (631)
Q Consensus 53 a~FG~~~~~~~~~g~l~~~~~-~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~~ 131 (631)
..|++..+.+.++|.+++... ..+||++.+....+++ +|||||+||+|+|.+|++|||++||++|||+|+.++
T Consensus 6 ~~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~~~~~------GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~ 79 (122)
T cd04816 6 LSYSPSTPPGGVTAPLVPLDPERPAGCDASDYDGLDVK------GAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDG 79 (122)
T ss_pred EeccCCCCCCCcEEEEEEcCCCCccCCCccccCCCCcC------CeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 347766677889999988533 2599998766544454 999999999999999999999999999999998764
Q ss_pred CceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcCCCeEEEEE
Q 006786 132 ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (631)
Q Consensus 132 ~~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l 181 (631)
....+....+ ...++||+++|++++|+.|++++++|.+|++++
T Consensus 80 ~~~~~~~~~~-------~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~~ 122 (122)
T cd04816 80 GGTAGTLGAP-------NIDLKVPVGVITKAAGAALRRRLGAGETLELDA 122 (122)
T ss_pred ccccccccCC-------CCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEeC
Confidence 3322211110 135789999999999999999999998887763
No 10
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.78 E-value=6.5e-19 Score=189.89 Aligned_cols=189 Identities=24% Similarity=0.528 Sum_probs=148.4
Q ss_pred CCCchhhHHHHHhhcCCCCC--Ccceecceeeec---Cccccccc-CCCceeeeccCCCCcCCCCccccCCccccccccc
Q 006786 352 DADNPVLKEEQDAQVGKGSR--GDVTILPTLVVN---NRQYRGKL-EKGAVLKAICSGFEETTEPAVCLSGDVETNECLD 425 (631)
Q Consensus 352 d~~n~iL~~e~~~q~~~g~~--~~v~~~P~~~in---~~~~~c~~-~~~~~~c~cc~Gf~~~~~~~~C~~~~~d~deC~~ 425 (631)
+.+..+|..+..++++.... .+-...|...-. +...+|.- +...|.|+|..||. .+++.|. |++||++
T Consensus 666 n~ee~~lr~a~Sn~igpV~E~S~~~~~npCy~gsh~cdt~a~C~pg~~~~~tcecs~g~~--gdgr~c~----d~~eca~ 739 (1289)
T KOG1214|consen 666 NDEERVLRFAVSNQIGPVKEDSDPTPVNPCYDGSHMCDTTARCHPGTGVDYTCECSSGYQ--GDGRNCV----DENECAT 739 (1289)
T ss_pred CccccchhhhhhhcccceecCCCCcccccceecCcccCCCccccCCCCcceEEEEeeccC--CCCCCCC----Chhhhcc
Confidence 55788899999999876321 111222222111 11222332 23468999999998 5899999 7999999
Q ss_pred CCCCCCCCCCCCccccccCCCceeeeecCCCCeeEeCCCcceecccC----CCccccCCCCCCCCCCCCCccceeeeCC-
Q 006786 426 NNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSG----PGKCKINNGGCWHESKDGHTYSACLDSE- 500 (631)
Q Consensus 426 ~~~~C~~~~~~~~~~C~n~~gs~~C~C~~~~G~~~~~dg~~~C~~~~----~~~C~~~~~~C~~~~~~~~~~~~C~~~~- 500 (631)
.++.|. +++.|+|.+++|+|+|.. ||.|.+|+ .+|..+. +++|....+.|.-. ..+.|....
T Consensus 740 ~~~~CG-----p~s~Cin~pg~~rceC~~--gy~F~dd~-~tCV~i~~pap~n~Ce~g~h~C~i~-----g~a~c~~hGg 806 (1289)
T KOG1214|consen 740 GFHRCG-----PNSVCINLPGSYRCECRS--GYEFADDR-HTCVLITPPAPANPCEDGSHTCAIA-----GQARCVHHGG 806 (1289)
T ss_pred CCCCCC-----CCceeecCCCceeEEEee--cceeccCC-cceEEecCCCCCCccccCccccCcC-----CceEEEecCC
Confidence 999998 669999999999999999 99999999 8898662 46777766667543 336677777
Q ss_pred -CCeeeCCCCcccCCccCcccCccccCCCCCCCCCCeeeeCCCceEEeCCCCccccCCCCccccC
Q 006786 501 -NGKCQCPPGFKGDGVKSCVDIDECKERKACQCSECSCKDTWGSYECTCSGDLLYIRDHDTCISK 564 (631)
Q Consensus 501 -~~~C~C~~Gf~g~~~~~C~dideC~~~~~C~~~~~~C~n~~Gsy~C~C~~G~~~~~~g~~C~~~ 564 (631)
+|.|.|.+||.|++.. |.|+|||.++ .|+ +.++|.|++|+|.|+|.+||. +||..|.+.
T Consensus 807 s~y~C~CLPGfsGDG~~-c~dvDeC~ps-rCh-p~A~CyntpgsfsC~C~pGy~--GDGf~CVP~ 866 (1289)
T KOG1214|consen 807 STYSCACLPGFSGDGHQ-CTDVDECSPS-RCH-PAATCYNTPGSFSCRCQPGYY--GDGFQCVPD 866 (1289)
T ss_pred ceEEEeecCCccCCccc-cccccccCcc-ccC-CCceEecCCCcceeecccCcc--CCCceecCC
Confidence 8999999999999966 9999999988 999 999999999999999999998 789999886
No 11
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.74 E-value=2.1e-17 Score=148.27 Aligned_cols=103 Identities=26% Similarity=0.364 Sum_probs=81.1
Q ss_pred CCceeeEEccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEECCCCCceecCCCCC
Q 006786 62 GSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEE 141 (631)
Q Consensus 62 ~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~~~~~~m~~~~~ 141 (631)
+..+|.|++. +.+||.+.+.+ .+++ +|||||+||+|+|.+|+++||++||++|||||+.....+...
T Consensus 20 ~~~~g~lv~~--~~~gC~~~~~~-~~~~------gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~---- 86 (122)
T cd02130 20 GEVTGPLVVV--PNLGCDAADYP-ASVA------GNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGT---- 86 (122)
T ss_pred CCcEEEEEEe--CCCCCCcccCC-cCCC------CEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccc----
Confidence 4568998873 46799986553 2344 999999999999999999999999999999998732221111
Q ss_pred ccccccccCcccccEEEEcHHHHHHHHHHHcCCCeEEEEE
Q 006786 142 DISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (631)
Q Consensus 142 ~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l 181 (631)
.+....+.||+++|++++|+.|++++++|.+|+++|
T Consensus 87 ----~~~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~ 122 (122)
T cd02130 87 ----LGEPSGPYVPTVGISQEDGKALVAALANGGEVSANL 122 (122)
T ss_pred ----cCCCCCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 111235789999999999999999999999898874
No 12
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.73 E-value=4.2e-17 Score=145.49 Aligned_cols=113 Identities=38% Similarity=0.612 Sum_probs=91.8
Q ss_pred ccccCCCCCC---CCceeeEEccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEEC
Q 006786 52 IGNFGIPQYG---GSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADD 128 (631)
Q Consensus 52 ~a~FG~~~~~---~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~ 128 (631)
+|.||..... ..+.|.++. +++.++|++.... .+++ +||+|++||+|+|.+|+++|+++||+++||+|+
T Consensus 2 ~a~fg~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~-~~v~------GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~ 73 (118)
T cd04818 2 SAGFGPALTNVTADVVLAGAAP-ASNTDGCTAFTNA-AAFA------GKIALIDRGTCNFTVKVLNAQNAGAIAVIVANN 73 (118)
T ss_pred CcccCCcCccccccceeEEEec-CCcccccCCCCcC-CCCC------CEEEEEECCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 6889977664 447777776 7889999998752 2343 999999999999999999999999999999998
Q ss_pred CCC-CceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcCCCeEEEEE
Q 006786 129 IEE-ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (631)
Q Consensus 129 ~~~-~~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l 181 (631)
.++ ..+.|.... ....||+++|++++|+.|++++++|.+|+++|
T Consensus 74 ~~~~~~~~~~~~~---------~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~ 118 (118)
T cd04818 74 VAGGAPITMGGDD---------PDITIPAVMISQADGDALKAALAAGGTVTVTL 118 (118)
T ss_pred CCCCcceeccCCC---------CCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 864 344553221 24679999999999999999999998888864
No 13
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.72 E-value=4.9e-18 Score=149.77 Aligned_cols=132 Identities=19% Similarity=0.271 Sum_probs=103.0
Q ss_pred cEEEEccCcccccccccccc-cCCCCCCCCceeeEEccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHH
Q 006786 35 SLMVTSPEKIKGSHDSAIGN-FGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVW 113 (631)
Q Consensus 35 ~~~v~~p~~~~~~~~~~~a~-FG~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~ 113 (631)
-|+|++|..++..|+..+|- ||...+ .+..+.-+++++|..||+.+.|.- ... +.|+||+||+|+|..|.+
T Consensus 34 ~F~vlsP~~l~Yty~~~pAkdfG~~F~-~r~e~~~lV~adPp~aC~elrN~~-f~~------d~vaL~eRGeCSFl~Ktl 105 (193)
T KOG3920|consen 34 LFTVLSPYTLAYTYQMKPAKDFGVHFP-DRFENLELVLADPPHACEELRNEI-FAP------DSVALMERGECSFLVKTL 105 (193)
T ss_pred EEEecCcccEEEEEEecchhhhccccc-hhhcCcceeecCChhHHHHHhhcc-cCC------CcEEEEecCCceeeehhh
Confidence 58899999999999988875 885444 356665455699999999998741 222 689999999999999999
Q ss_pred HHHHcCCcEEEEEECCCCC-----ceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcCCCeEEEEE
Q 006786 114 NAQKAGASAVLVADDIEEA-----LITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (631)
Q Consensus 114 ~Aq~aGA~avIi~n~~~~~-----~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l 181 (631)
++|+|||.|+||.|+.... .+.|.. +.+.+..+||++++-..+|-.++..|++-..+-+.+
T Consensus 106 ~~e~aGa~aiiitd~~~~~~sf~~YveMI~-------D~sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i 171 (193)
T KOG3920|consen 106 NGEKAGATAIIITDSQNYEYSFHQYVEMIP-------DESQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKI 171 (193)
T ss_pred hhhhcCceEEEEecCCCCchhHHHHHHhcC-------cccccccCCceEEEeccceEEEehhHHHhCCccEEE
Confidence 9999999999999876432 456742 233456799999999999999998887654333333
No 14
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.68 E-value=3.2e-16 Score=140.94 Aligned_cols=92 Identities=28% Similarity=0.347 Sum_probs=72.4
Q ss_pred CCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEECCCCCceecCCCCCccccccccCc
Q 006786 72 KENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIEN 151 (631)
Q Consensus 72 ~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~~~~~~m~~~~~~~~~~~~~~~ 151 (631)
+.+.+||++++...++++ ++||||+||+|+|.+|++|||++||++|||||+.++.+ .|... ..
T Consensus 38 ~~~~~gC~~~~~~~~~~~------g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~-~~~~~----------~~ 100 (129)
T cd02124 38 SVADDACQPLPDDTPDLS------GYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPT-DQVGS----------DA 100 (129)
T ss_pred CCCcccCcCCCccccccc------CeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcc-cccCC----------CC
Confidence 567899999865322333 89999999999999999999999999999999986543 23211 12
Q ss_pred ccccEEEEcHHHHHHHHHHHcCCCeEEEEE
Q 006786 152 ITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (631)
Q Consensus 152 i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l 181 (631)
..||.+++ +++|++|+++|++|..|+++|
T Consensus 101 ~~~~~~~~-~~~G~~l~~~l~~G~~vtv~f 129 (129)
T cd02124 101 DSIIAAVT-PEDGEAWIDALAAGSNVTVDF 129 (129)
T ss_pred cceeeEEe-HHHHHHHHHHHhcCCeEEEeC
Confidence 34566666 999999999999998888864
No 15
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.67 E-value=5.5e-16 Score=140.13 Aligned_cols=104 Identities=25% Similarity=0.259 Sum_probs=74.7
Q ss_pred cCCCCCCCCceeeEEccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcc-----HHHHHHHHHHcCCcEEEEEECC
Q 006786 55 FGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCF-----FALKVWNAQKAGASAVLVADDI 129 (631)
Q Consensus 55 FG~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~-----F~~Kv~~Aq~aGA~avIi~n~~ 129 (631)
|-.....+.++|.|++.. .-+|+-. ..+++ +||+||+||+|+ |.+|++|||+|||+|||||||.
T Consensus 27 ~~s~~~~g~~tg~lv~~g--~~g~d~~---~~d~~------GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~ 95 (139)
T cd04817 27 YASMPVTGSATGSLYYCG--TSGGSYI---CGGMA------GKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNA 95 (139)
T ss_pred ccccccCCcceEEEEEcc--CCCcccc---CCCcC------ccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCC
Confidence 433334556888887632 3446321 12344 999999999999 9999999999999999999998
Q ss_pred C--CCceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcCCCeE
Q 006786 130 E--EALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMV 177 (631)
Q Consensus 130 ~--~~~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~v 177 (631)
+ +.+..|.... ...++||+++|++++|++|+++|.++.+|
T Consensus 96 ~~~g~~~~~lg~~--------~~~~~IP~v~is~~dG~~L~~~l~~~~tv 137 (139)
T cd04817 96 ALAGLQNPFLVDT--------NNDTTIPSVSVDRADGQALLAALGQSTTV 137 (139)
T ss_pred CCCCcccccccCC--------CCCceEeEEEeeHHHHHHHHHHhcCCCee
Confidence 3 3222232111 12579999999999999999999766444
No 16
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.3e-16 Score=158.85 Aligned_cols=115 Identities=23% Similarity=0.333 Sum_probs=95.4
Q ss_pred cccccccccCCCCCCCCceeeEEccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEE
Q 006786 47 SHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVA 126 (631)
Q Consensus 47 ~~~~~~a~FG~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~ 126 (631)
+|...+|.||+......+.|.++. ++|.+||+++.+.. ... .....+++||.||+|+|.+|+++||+||++|+|||
T Consensus 35 sf~d~~a~f~~s~~~e~~~G~l~~-~ep~~aC~~i~~~p-~~~--~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVy 110 (348)
T KOG4628|consen 35 SFADLPALFGPSLPSEGNLGVLVV-AEPLNACNPITNFP-EHS--TRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVY 110 (348)
T ss_pred cccCCccccCCccccccceeeeec-CCCccccCccccCc-cCC--CCCcceEEEEEccCCchHHHHhhcccccCceEEEe
Confidence 688999999999999999999865 78889999997742 222 34447999999999999999999999999999999
Q ss_pred ECCCCC-ceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcCC
Q 006786 127 DDIEEA-LITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGG 174 (631)
Q Consensus 127 n~~~~~-~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~ 174 (631)
||...+ ++.|... ..+|.||++||+...|+.|+++....
T Consensus 111 nn~~~~~lv~~~~~---------~~~v~i~~~~vs~~~ge~l~~~~~~~ 150 (348)
T KOG4628|consen 111 NNVGSEDLVAMASN---------PSKVDIHIVFVSVFSGELLSSYAGRT 150 (348)
T ss_pred cCCCCchheeeccC---------CccceeEEEEEeeehHHHHHHhhccc
Confidence 988654 5666332 23799999999999999999976544
No 17
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.53 E-value=2.5e-14 Score=148.20 Aligned_cols=174 Identities=21% Similarity=0.323 Sum_probs=116.9
Q ss_pred ccccccccCCCCCCCCceeeEEc--cCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEE
Q 006786 48 HDSAIGNFGIPQYGGSMAGAVTY--PKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLV 125 (631)
Q Consensus 48 ~~~~~a~FG~~~~~~~~~g~l~~--~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi 125 (631)
+....+.||..+....-...+.+ -.+|.|-|++... .++ +++++|.||+|+|.+|+++||+|||.|++|
T Consensus 55 ~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~---kl~------~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLli 125 (541)
T KOG2442|consen 55 FAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQS---KLS------GKVALVFRGNCSFTEKAKLAQAAGASALLI 125 (541)
T ss_pred hhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCc---ccc------ceeEEEecccceeehhhhhhhhcCceEEEE
Confidence 44667788876554332222211 1568889998764 333 899999999999999999999999999999
Q ss_pred EECCCCCceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcCCCeEEEEEEecccccCCCCceeEE--------
Q 006786 126 ADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYE-------- 197 (631)
Q Consensus 126 ~n~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l~~~~~~p~~~~~~~~~-------- 197 (631)
+||.. ++.-|...+.+ ...+++||++||++++|+.|.+....+..|++.|..+. ...++|.
T Consensus 126 in~~~-d~~~~~~~~~~-----~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYaPk-----~P~vD~~~v~iwlmA 194 (541)
T KOG2442|consen 126 INNKK-DLLFMPCGNKE-----TSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYAPK-----RPAVDYAMVFIWLMA 194 (541)
T ss_pred EcCch-hhccCCCCCCC-----ccccccceEEEEEhhhHHHHHhhhccCCeEEEEEECCC-----CCCccHHHHHHHHHH
Confidence 99985 44455443332 24589999999999999999999999999999998732 4455554
Q ss_pred --------EEeecCCcccchhhhHHHHHHHhhHHH-HHH--hcCCceeEEEEEEEec
Q 006786 198 --------LWTNSNDECGVKCDMLMAFVKEFRGPA-QIL--EKGGYTQFTPHYITWY 243 (631)
Q Consensus 198 --------~~~~s~~~~~~~~~~~~~f~~~~~~~~-~~~--~~~~~~~f~p~~~~~~ 243 (631)
+|+...+.-.. .++.+.+++-.... +.. ++++..+|+|.+....
T Consensus 195 VgTVa~ggyWs~~t~~~~~--~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~~f 249 (541)
T KOG2442|consen 195 VGTVACGGYWSGLTEREKA--IEADRLLDDDSSSEGNTKETKEEEVVDISPITAVFF 249 (541)
T ss_pred HhHhhccchhhhccChhhh--hhhhhhcccccccccccccCCccccEEeeeeEEEEe
Confidence 67666654221 12222222111100 011 1247889999887543
No 18
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.49 E-value=2.9e-14 Score=123.43 Aligned_cols=68 Identities=37% Similarity=0.455 Sum_probs=52.6
Q ss_pred CcEEEEeCCCccHHHHHHHHHHcCCcEEEEEECCCCCceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHH
Q 006786 96 PNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKAL 171 (631)
Q Consensus 96 ~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l 171 (631)
++||||+||.|+|.+|+++||++||+||||+|.. .....+. .......+.||+++|++++|+.|++++
T Consensus 34 gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~-~~~~~~~-------~~~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 34 GKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPP-PNNGSMI-------DSEDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp TSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TS-CSCTTTT-------CEBTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred ceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCC-ccccCcc-------cccCCCCcEEEEEEeCHHHHhhhhccC
Confidence 9999999999999999999999999999999922 1111111 112234689999999999999999875
No 19
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.48 E-value=1.7e-13 Score=123.67 Aligned_cols=98 Identities=36% Similarity=0.431 Sum_probs=75.2
Q ss_pred CCCcCCCCCCC--CCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEECCCCCceecCCCCCcccccccc
Q 006786 72 KENRKGCREFG--DFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYI 149 (631)
Q Consensus 72 ~~~~~gC~~~~--~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~~~~~~m~~~~~~~~~~~~~ 149 (631)
..+..+|.+.. ....+++ +||||++||+|+|.+|+++||++||+||||+|+.+.....|....+ ..
T Consensus 27 ~~~~~~C~~~~~~~~~~~~~------GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~------~~ 94 (126)
T cd00538 27 AGPLVGCGYGTTDDSGADVK------GKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGL------ES 94 (126)
T ss_pred ccceEEEecCcccccCCCcc------ceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccC------CC
Confidence 45667898875 2222343 9999999999999999999999999999999998643333321110 02
Q ss_pred CcccccEEEEcHHHHHHHHHHHcCCCeEEEEE
Q 006786 150 ENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (631)
Q Consensus 150 ~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l 181 (631)
....||+++|++++|+.|++++.++.+|++++
T Consensus 95 ~~~~iP~~~is~~~g~~l~~~~~~~~~v~~~~ 126 (126)
T cd00538 95 TDPSIPTVGISYADGEALLSLLEAGKTVTVDL 126 (126)
T ss_pred CCCcEeEEEeCHHHHHHHHHHHhcCCceEEeC
Confidence 35689999999999999999999988877753
No 20
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=99.46 E-value=9.2e-14 Score=161.90 Aligned_cols=104 Identities=33% Similarity=0.818 Sum_probs=89.5
Q ss_pred cccccCCCCCCCCCCCCccccccCC-CceeeeecCCCCeeEeCCCcceecccCCCccccCCCCCCCCCCCCCccceeeeC
Q 006786 421 NECLDNNGGCWQDKTANVTACKDTF-RGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACLDS 499 (631)
Q Consensus 421 deC~~~~~~C~~~~~~~~~~C~n~~-gs~~C~C~~~~G~~~~~dg~~~C~~~~~~~C~~~~~~C~~~~~~~~~~~~C~~~ 499 (631)
+.|..++ |+ +++.|..++ |+|.|.|++ +|.| ++|+ ++.++|..+ +|... ++|...
T Consensus 3865 d~C~~np--Cq-----hgG~C~~~~~ggy~CkCps----qysG---~~CE-i~~epC~sn--PC~~G-------gtCip~ 3920 (4289)
T KOG1219|consen 3865 DPCNDNP--CQ-----HGGTCISQPKGGYKCKCPS----QYSG---NHCE-IDLEPCASN--PCLTG-------GTCIPF 3920 (4289)
T ss_pred cccccCc--cc-----CCCEecCCCCCceEEeCcc----cccC---cccc-cccccccCC--CCCCC-------CEEEec
Confidence 6676554 76 789999985 689999999 7775 5698 456899866 78776 889988
Q ss_pred C-CCeeeCCCCcccCCccCcc-c-CccccCCCCCCCCCCeeeeCCCceEEeCCCCcc
Q 006786 500 E-NGKCQCPPGFKGDGVKSCV-D-IDECKERKACQCSECSCKDTWGSYECTCSGDLL 553 (631)
Q Consensus 500 ~-~~~C~C~~Gf~g~~~~~C~-d-ideC~~~~~C~~~~~~C~n~~Gsy~C~C~~G~~ 553 (631)
. +|.|.|+.||+|.. |+ + |+||+.+ +|. .++.|+|++|+|.|.|.+||.
T Consensus 3921 ~n~f~CnC~~gyTG~~---Ce~~Gi~eCs~n-~C~-~gg~C~n~~gsf~CncT~g~~ 3972 (4289)
T KOG1219|consen 3921 YNGFLCNCPNGYTGKR---CEARGISECSKN-VCG-TGGQCINIPGSFHCNCTPGIL 3972 (4289)
T ss_pred CCCeeEeCCCCccCce---eecccccccccc-ccc-CCceeeccCCceEeccChhHh
Confidence 8 99999999999987 87 3 8999998 999 999999999999999999997
No 21
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.40 E-value=2.7e-12 Score=118.49 Aligned_cols=107 Identities=25% Similarity=0.260 Sum_probs=77.1
Q ss_pred cccCCCCCCCCceeeEEccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEECCCCC
Q 006786 53 GNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA 132 (631)
Q Consensus 53 a~FG~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~~~ 132 (631)
..|+.+...+...+.+++.. . |.+-+....+++ +|||||+||+|+|.+|+++||++||++|||+|+....
T Consensus 15 ~~~~~~~~~~~~~~~lv~~g---~-g~~~d~~~~dv~------GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~ 84 (143)
T cd02133 15 AFSGNPTDLLGKTYELVDAG---L-GTPEDFEGKDVK------GKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL 84 (143)
T ss_pred ccCCCcCCCCCcEEEEEEcc---C-CchhccCCCCcc------ceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc
Confidence 44666666677889988742 1 222222222343 9999999999999999999999999999999987543
Q ss_pred ceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcCCCeEEEEEE
Q 006786 133 LITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLD 182 (631)
Q Consensus 133 ~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l~ 182 (631)
..|.. .....||+++|++++|+.|++++++ .+++++.
T Consensus 85 -~~~~~----------~~~~~iP~v~Is~~dG~~L~~~l~~--~~~i~~~ 121 (143)
T cd02133 85 -IPGTL----------GEAVFIPVVFISKEDGEALKAALES--SKKLTFN 121 (143)
T ss_pred -ccccC----------CCCCeEeEEEecHHHHHHHHHHHhC--CCeEEEE
Confidence 22311 0134799999999999999999987 3444433
No 22
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.36 E-value=6.4e-12 Score=113.37 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=76.0
Q ss_pred CCCceeeEEccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCc--cHHHHHHHHHHcCCcEEEEEECCCCCceecCC
Q 006786 61 GGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDC--FFALKVWNAQKAGASAVLVADDIEEALITMDT 138 (631)
Q Consensus 61 ~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C--~F~~Kv~~Aq~aGA~avIi~n~~~~~~~~m~~ 138 (631)
.+.++|.+++.. .| .+-+..+.+++ ||||||+||.| +|..|+++|+++||+||||+|+.+..+..+..
T Consensus 20 ~~~~~~~lV~~g---~G-~~~d~~~~~v~------GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~ 89 (127)
T cd04819 20 SGEAKGEPVDAG---YG-LPKDFDGLDLE------GKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGD 89 (127)
T ss_pred CCCeeEEEEEeC---CC-CHHHcCCCCCC------CeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccc
Confidence 345789988842 22 22111122343 99999999999 99999999999999999999987655432211
Q ss_pred CCCccccccccCcccccEEEEcHHHHHHHHHHHcCCCeEEEE
Q 006786 139 PEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVN 180 (631)
Q Consensus 139 ~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~ 180 (631)
.. ........||++.|+.+||+.|++++++|..|.++
T Consensus 90 ~~-----~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~~~~~ 126 (127)
T cd04819 90 EG-----TEDGPPSPIPAASVSGEDGLRLARVAERNDTLVLR 126 (127)
T ss_pred cc-----ccCCCCCCCCEEEEeHHHHHHHHHHHhcCCceEee
Confidence 10 11123468999999999999999999998877764
No 23
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.26 E-value=1.3e-11 Score=112.16 Aligned_cols=111 Identities=20% Similarity=0.160 Sum_probs=78.3
Q ss_pred cCCCCCCCCceeeEEccCCCcCCCCCCC-CCCCccccCCCCCCcEEEEeCCCc------cHHHH-------HHHHHHcCC
Q 006786 55 FGIPQYGGSMAGAVTYPKENRKGCREFG-DFGISFKAKPGALPNFVLVDRGDC------FFALK-------VWNAQKAGA 120 (631)
Q Consensus 55 FG~~~~~~~~~g~l~~~~~~~~gC~~~~-~~~~~~~~~~~~~~~i~Lv~RG~C------~F~~K-------v~~Aq~aGA 120 (631)
|++...++.++|.+++..++ + .+. ++..+++ ||||||+||.| +|..| +.+|+++||
T Consensus 8 ~s~~t~~~gvta~vv~v~~~--~--~~~~~~~~~v~------GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA 77 (134)
T cd04815 8 GSVATPPEGITAEVVVVKSF--D--ELKAAPAGAVK------GKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGA 77 (134)
T ss_pred CCCCCCCCCcEEEEEEECCH--H--HHHhcchhhcC------CeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCC
Confidence 44445556699999874421 1 221 1112333 99999999999 99999 799999999
Q ss_pred cEEEEEECCCCCc-eecCCCCCccccccc-cCcccccEEEEcHHHHHHHHHHHcCCCeEEEEE
Q 006786 121 SAVLVADDIEEAL-ITMDTPEEDISSAKY-IENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (631)
Q Consensus 121 ~avIi~n~~~~~~-~~m~~~~~~~~~~~~-~~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l 181 (631)
.|+||+|+.+... ....+ ..++ ...+.||++.|+.+||+.|.+++++|.+|.++|
T Consensus 78 ~avIv~s~~~~~~~~~~~G------~~~~~~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~l 134 (134)
T cd04815 78 VAVLIRSIGTDSHRSPHTG------MMSYDDGVPKIPAAAISVEDADMLERLAARGKPIRVNL 134 (134)
T ss_pred EEEEEEecCcccCCCCcCC------ccccCCCCCCCCEEEechhcHHHHHHHHhCCCCeEEeC
Confidence 9999999754321 00000 0111 224679999999999999999999998888864
No 24
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.11 E-value=3.8e-10 Score=101.84 Aligned_cols=85 Identities=19% Similarity=0.199 Sum_probs=67.4
Q ss_pred CcCCCCCCCCCCCccccCCCCCCcEEEEeCCCc-cHHHHHHHHHHcCCcEEEEEECCCCCceecCCCCCccccccccCcc
Q 006786 74 NRKGCREFGDFGISFKAKPGALPNFVLVDRGDC-FFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENI 152 (631)
Q Consensus 74 ~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C-~F~~Kv~~Aq~aGA~avIi~n~~~~~~~~m~~~~~~~~~~~~~~~i 152 (631)
...+|++.......++ |||||++||.| +|.+|+.+|+++||.|+|++|+..+.. .+. ....
T Consensus 36 ~~~~C~~~~~~~~~v~------GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~-~~~-----------~~~~ 97 (126)
T cd02120 36 DASLCLPGSLDPSKVK------GKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL-DVV-----------ADAH 97 (126)
T ss_pred ccccCCCCCCChhhcc------ccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc-eec-----------cccc
Confidence 4478987654322344 99999999999 999999999999999999999875432 121 1135
Q ss_pred cccEEEEcHHHHHHHHHHHcCCCe
Q 006786 153 TIPSALIDKSFGETLKKALSGGEM 176 (631)
Q Consensus 153 ~IP~~~i~~~~G~~l~~~l~~~~~ 176 (631)
.||+++|++++|+.|+++++++..
T Consensus 98 ~iP~v~I~~~~g~~l~~y~~~~~~ 121 (126)
T cd02120 98 VLPAVHVDYEDGTAILSYINSTSN 121 (126)
T ss_pred ccceEEECHHHHHHHHHHHHcCCC
Confidence 799999999999999999987653
No 25
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.97 E-value=2.3e-09 Score=101.18 Aligned_cols=123 Identities=24% Similarity=0.296 Sum_probs=75.5
Q ss_pred cccCCCCCCCCceeeEEccCCCcCCCCCCCCCCCccc-cCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEECCCC
Q 006786 53 GNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFK-AKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEE 131 (631)
Q Consensus 53 a~FG~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~-~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~~ 131 (631)
..|-.-...+.++|.++|. ..| ..-+.. .+. ......++||||+||.|+|.+|+++||++||+|||||+|..+
T Consensus 18 ~~f~~~s~~G~v~g~lVyv---n~G-~~~Df~--~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d 91 (183)
T cd02128 18 GGYVAYSAAGTVTGKLVYA---NYG-RKKDFE--DLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPAD 91 (183)
T ss_pred ccccCCCCCCceEEEEEEc---CCC-CHHHHH--HHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHH
Confidence 3454444556789999984 233 221110 000 011223999999999999999999999999999999998522
Q ss_pred C-------------------ceecCCCCCccc---cccccCcccccEEEEcHHHHHHHHHHHcCCCeEEEEEEec
Q 006786 132 A-------------------LITMDTPEEDIS---SAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWR 184 (631)
Q Consensus 132 ~-------------------~~~m~~~~~~~~---~~~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~v~v~l~~~ 184 (631)
. .+++..+..... ......-.+||++=||+++++.|++.|.-.. +--+|+
T Consensus 92 ~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~~---~p~~w~ 163 (183)
T cd02128 92 FPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGPV---CPSGWK 163 (183)
T ss_pred cCcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCCC---CCcccc
Confidence 1 111111110000 0000112489999999999999999996432 234663
No 26
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.97 E-value=2.2e-09 Score=117.37 Aligned_cols=117 Identities=25% Similarity=0.518 Sum_probs=96.7
Q ss_pred cCcccccccCCCceeeeccCCCCcCCCCccccCCcc--cccccccCCCCCCCCCCCCccccccC-CCceeeeecCCCCee
Q 006786 383 NNRQYRGKLEKGAVLKAICSGFEETTEPAVCLSGDV--ETNECLDNNGGCWQDKTANVTACKDT-FRGRVCECPLVDGVQ 459 (631)
Q Consensus 383 n~~~~~c~~~~~~~~c~cc~Gf~~~~~~~~C~~~~~--d~deC~~~~~~C~~~~~~~~~~C~n~-~gs~~C~C~~~~G~~ 459 (631)
.+..-.|.+.++++.|.|..||....++.+|..... .+|.|.++.+.|.-+ ....|... .++|.|.|.+ +
T Consensus 744 CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~---g~a~c~~hGgs~y~C~CLP----G 816 (1289)
T KOG1214|consen 744 CGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIA---GQARCVHHGGSTYSCACLP----G 816 (1289)
T ss_pred CCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCccccCcC---CceEEEecCCceEEEeecC----C
Confidence 456677899999999999999999889899984322 468899888889743 34567766 4579999999 7
Q ss_pred EeCCCcceecccCCCccccCCCCCCCCCCCCCccceeeeCC-CCeeeCCCCcccCCccCcc
Q 006786 460 FKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACLDSE-NGKCQCPPGFKGDGVKSCV 519 (631)
Q Consensus 460 ~~~dg~~~C~~~~~~~C~~~~~~C~~~~~~~~~~~~C~~~~-~~~C~C~~Gf~g~~~~~C~ 519 (631)
|.||| ..|.++ ++|.. ..|... +.|.+++ ++.|+|.+||.|++.. |.
T Consensus 817 fsGDG-~~c~dv--DeC~p--srChp~-------A~CyntpgsfsC~C~pGy~GDGf~-CV 864 (1289)
T KOG1214|consen 817 FSGDG-HQCTDV--DECSP--SRCHPA-------ATCYNTPGSFSCRCQPGYYGDGFQ-CV 864 (1289)
T ss_pred ccCCc-cccccc--cccCc--cccCCC-------ceEecCCCcceeecccCccCCCce-ec
Confidence 88999 889877 99984 478877 8999999 9999999999999965 75
No 27
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=98.72 E-value=3.9e-08 Score=112.58 Aligned_cols=102 Identities=29% Similarity=0.622 Sum_probs=74.1
Q ss_pred ceeeecCcccccccCCCceeeeccCCCCcCCCCccccCCcccccccccCCCCCCCCCCCCccccccCCCceeeeecCCCC
Q 006786 378 PTLVVNNRQYRGKLEKGAVLKAICSGFEETTEPAVCLSGDVETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDG 457 (631)
Q Consensus 378 P~~~in~~~~~c~~~~~~~~c~cc~Gf~~~~~~~~C~~~~~d~deC~~~~~~C~~~~~~~~~~C~n~~gs~~C~C~~~~G 457 (631)
|-+.....-+|-.+..++..|.|.+||+ +..|.. ++|+|-.++ |. |+++|....|+|+|+|.+
T Consensus 1204 pf~~s~s~lfRpi~pvnglrCrCPpGFT----gd~CeT---eiDlCYs~p--C~-----nng~C~srEggYtCeCrp--- 1266 (2531)
T KOG4289|consen 1204 PFLASDSVLFRPIHPVNGLRCRCPPGFT----GDYCET---EIDLCYSGP--CG-----NNGRCRSREGGYTCECRP--- 1266 (2531)
T ss_pred ccccccceeeeeccccCceeEeCCCCCC----cccccc---hhHhhhcCC--CC-----CCCceEEecCceeEEecC---
Confidence 3333344456666677889999999997 568997 899996655 97 789999999999999999
Q ss_pred eeEeCCCcceecc-cCCCccccCCCCCCCCCCCCCccceeeeCC--CCeeeCCCC
Q 006786 458 VQFKGDGYSHCEV-SGPGKCKINNGGCWHESKDGHTYSACLDSE--NGKCQCPPG 509 (631)
Q Consensus 458 ~~~~~dg~~~C~~-~~~~~C~~~~~~C~~~~~~~~~~~~C~~~~--~~~C~C~~G 509 (631)
+|. | ++|+- .....|. ++.|.+. ++|.+.. ++.|.||.|
T Consensus 1267 -g~t--G-ehCEvs~~agrCv--pGvC~ng-------gtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1267 -GFT--G-EHCEVSARAGRCV--PGVCKNG-------GTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred -Ccc--c-cceeeecccCccc--cceecCC-------CEEeecCCCceeccCCCc
Confidence 455 4 67883 2234554 4455554 6688776 777778755
No 28
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.61 E-value=3.1e-08 Score=70.78 Aligned_cols=41 Identities=41% Similarity=0.851 Sum_probs=36.2
Q ss_pred cCccccCC-CCCCCCCCeeeeCCCceEEeCCCCccccCCCCcc
Q 006786 520 DIDECKER-KACQCSECSCKDTWGSYECTCSGDLLYIRDHDTC 561 (631)
Q Consensus 520 dideC~~~-~~C~~~~~~C~n~~Gsy~C~C~~G~~~~~~g~~C 561 (631)
|||||... +.|. .++.|+|+.|+|+|.|++||....++.+|
T Consensus 1 DidEC~~~~~~C~-~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCP-ENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp ESSTTTTTSSSSS-TTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CccccCCCCCcCC-CCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 79999987 7898 88999999999999999999976666655
No 29
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.57 E-value=3.1e-07 Score=89.83 Aligned_cols=120 Identities=28% Similarity=0.326 Sum_probs=78.0
Q ss_pred CCceeeEEccCCCcCCCCCCCC-----CCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEECCCCCc---
Q 006786 62 GSMAGAVTYPKENRKGCREFGD-----FGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEAL--- 133 (631)
Q Consensus 62 ~~~~g~l~~~~~~~~gC~~~~~-----~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~~~~--- 133 (631)
+.++|.+||.. .|..-+. .+.+++ ||||||++|.+.+..|+++||++||+|||||++..+.-
T Consensus 43 g~v~g~lVyvn----yG~~~D~~~L~~~gvdv~------GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~ 112 (220)
T cd02121 43 GNVTAELVYAN----YGSPEDFEYLEDLGIDVK------GKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYIT 112 (220)
T ss_pred CCceEEEEEcC----CCcHHHHHHHhhcCCCCC------CeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhccccc
Confidence 45899999852 3333221 122333 99999999999999999999999999999998753210
Q ss_pred -----------------e-----e---cCCCCCcccc-----------c-cccCcccccEEEEcHHHHHHHHHHHcCCCe
Q 006786 134 -----------------I-----T---MDTPEEDISS-----------A-KYIENITIPSALIDKSFGETLKKALSGGEM 176 (631)
Q Consensus 134 -----------------~-----~---m~~~~~~~~~-----------~-~~~~~i~IP~~~i~~~~G~~l~~~l~~~~~ 176 (631)
+ . ...++.-+.+ . ....-.+||++=|+..|++.|++.|....
T Consensus 113 ~~~~~~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~~- 191 (220)
T cd02121 113 GENGKTYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGGPG- 191 (220)
T ss_pred ccccccCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCCCC-
Confidence 0 0 0001100000 0 11122479999999999999999997543
Q ss_pred EEEEEEecccccCCCCceeEEEE
Q 006786 177 VNVNLDWREAVPHPDDRVEYELW 199 (631)
Q Consensus 177 v~v~l~~~~~~p~~~~~~~~~~~ 199 (631)
+--+|...+ .+.|.+|
T Consensus 192 --~p~~W~g~l-----~~~y~~g 207 (220)
T cd02121 192 --APSDWQGGL-----PVTYRLG 207 (220)
T ss_pred --CCccccCCC-----CCceeeC
Confidence 445775443 3677776
No 30
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=98.48 E-value=1.5e-07 Score=111.72 Aligned_cols=102 Identities=27% Similarity=0.595 Sum_probs=83.7
Q ss_pred cCcccccccC---CCceeeeccCCCCcCCCCccccCCcccccccccCCCCCCCCCCCCccccccCCCceeeeecCCCCee
Q 006786 383 NNRQYRGKLE---KGAVLKAICSGFEETTEPAVCLSGDVETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQ 459 (631)
Q Consensus 383 n~~~~~c~~~---~~~~~c~cc~Gf~~~~~~~~C~~~~~d~deC~~~~~~C~~~~~~~~~~C~n~~gs~~C~C~~~~G~~ 459 (631)
|.|+.-|.+. .+.|.|.|.+-|. +..|+. ++++|..+| |. ++++|....++|.|.|+. +
T Consensus 3870 npCqhgG~C~~~~~ggy~CkCpsqys----G~~CEi---~~epC~snP--C~-----~GgtCip~~n~f~CnC~~----g 3931 (4289)
T KOG1219|consen 3870 NPCQHGGTCISQPKGGYKCKCPSQYS----GNHCEI---DLEPCASNP--CL-----TGGTCIPFYNGFLCNCPN----G 3931 (4289)
T ss_pred CcccCCCEecCCCCCceEEeCccccc----Cccccc---ccccccCCC--CC-----CCCEEEecCCCeeEeCCC----C
Confidence 4444444443 4789999999996 889996 899998776 98 789999999999999999 5
Q ss_pred EeCCCcceecccCCCccccCCCCCCCCCCCCCccceeeeCC-CCeeeCCCCcccCC
Q 006786 460 FKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACLDSE-NGKCQCPPGFKGDG 514 (631)
Q Consensus 460 ~~~dg~~~C~~~~~~~C~~~~~~C~~~~~~~~~~~~C~~~~-~~~C~C~~Gf~g~~ 514 (631)
|+| .+|+..++++|+.+ .|.+. ++|.+.. +|.|.|.+||.|..
T Consensus 3932 yTG---~~Ce~~Gi~eCs~n--~C~~g-------g~C~n~~gsf~CncT~g~~gr~ 3975 (4289)
T KOG1219|consen 3932 YTG---KRCEARGISECSKN--VCGTG-------GQCINIPGSFHCNCTPGILGRT 3975 (4289)
T ss_pred ccC---ceeecccccccccc--cccCC-------ceeeccCCceEeccChhHhccc
Confidence 555 45997667899855 78777 8999999 99999999999876
No 31
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=98.42 E-value=2.1e-07 Score=106.78 Aligned_cols=98 Identities=29% Similarity=0.706 Sum_probs=77.5
Q ss_pred CCCceeeeecCCCCeeEeCCCcceecccCCCccccCCCCCCCCCCCCCccceeeeCC-CCeeeCCCCcccCCccCcc---
Q 006786 444 TFRGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACLDSE-NGKCQCPPGFKGDGVKSCV--- 519 (631)
Q Consensus 444 ~~gs~~C~C~~~~G~~~~~dg~~~C~~~~~~~C~~~~~~C~~~~~~~~~~~~C~~~~-~~~C~C~~Gf~g~~~~~C~--- 519 (631)
..++++|.||+ +|+||- |+. .++.|-.. +|.++ +.|.... +|+|.|.+||+|.. |+
T Consensus 1218 pvnglrCrCPp----GFTgd~---CeT-eiDlCYs~--pC~nn-------g~C~srEggYtCeCrpg~tGeh---CEvs~ 1277 (2531)
T KOG4289|consen 1218 PVNGLRCRCPP----GFTGDY---CET-EIDLCYSG--PCGNN-------GRCRSREGGYTCECRPGFTGEH---CEVSA 1277 (2531)
T ss_pred ccCceeEeCCC----CCCccc---ccc-hhHhhhcC--CCCCC-------CceEEecCceeEEecCCccccc---eeeec
Confidence 45678999999 667665 873 35889754 78776 8899888 99999999999987 76
Q ss_pred cCccccCCCCCCCCCCeeeeCC-CceEEeCCCCccccCCCCccccCCc
Q 006786 520 DIDECKERKACQCSECSCKDTW-GSYECTCSGDLLYIRDHDTCISKTA 566 (631)
Q Consensus 520 dideC~~~~~C~~~~~~C~n~~-Gsy~C~C~~G~~~~~~g~~C~~~~~ 566 (631)
.---|.++ .|. ++++|+|.. |+|.|.|+.| ..++..|.....
T Consensus 1278 ~agrCvpG-vC~-nggtC~~~~nggf~c~Cp~g---e~e~prC~v~tr 1320 (2531)
T KOG4289|consen 1278 RAGRCVPG-VCK-NGGTCVNLLNGGFCCHCPYG---EFEDPRCEVTTR 1320 (2531)
T ss_pred ccCccccc-eec-CCCEEeecCCCceeccCCCc---ccCCCceEEEee
Confidence 22347776 999 999999987 9999999999 245677877654
No 32
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.42 E-value=2.1e-06 Score=79.03 Aligned_cols=96 Identities=20% Similarity=0.177 Sum_probs=66.1
Q ss_pred CCceeeEEccCC--CcCCCCCCCCCCCccccCCCCCCcEEEEeCCC------------------ccHHHHHHHHHHcCCc
Q 006786 62 GSMAGAVTYPKE--NRKGCREFGDFGISFKAKPGALPNFVLVDRGD------------------CFFALKVWNAQKAGAS 121 (631)
Q Consensus 62 ~~~~g~l~~~~~--~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~------------------C~F~~Kv~~Aq~aGA~ 121 (631)
+.++|.+|+... ...+|...++.+.+++ ||||||.||. |+|..|+.+|+++||+
T Consensus 18 g~vtg~lVfvGyGi~~~~~~~~Dy~giDVk------GKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (151)
T cd04822 18 GAVTAPVVFAGYGITAPELGYDDYAGLDVK------GKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAA 91 (151)
T ss_pred CCceEeEEEecCCcCccccchhhccCCCCC------CeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCe
Confidence 568899988532 3456765555445665 9999999985 9999999999999999
Q ss_pred EEEEEECCCCCceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHc
Q 006786 122 AVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALS 172 (631)
Q Consensus 122 avIi~n~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~ 172 (631)
|||||++..+..- ..+.....+ .. .++.|+....+.+..++.
T Consensus 92 aVIv~~d~~~~~~----~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~ 133 (151)
T cd04822 92 AVIVVNGPNSHSG----DADRLPRFG----GT-APQRVDIAAADPWFTAAE 133 (151)
T ss_pred EEEEEeCCcccCc----ccccccccC----cc-ceEEechHHHHHHhhhhh
Confidence 9999998754320 000000001 11 178888888888877643
No 33
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.33 E-value=5.4e-07 Score=64.37 Aligned_cols=42 Identities=29% Similarity=0.745 Sum_probs=35.5
Q ss_pred cccccccCCCCCCCCCCCCccccccCCCceeeeecCCCCeeEeCCCccee
Q 006786 419 ETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHC 468 (631)
Q Consensus 419 d~deC~~~~~~C~~~~~~~~~~C~n~~gs~~C~C~~~~G~~~~~dg~~~C 468 (631)
|||||...++.|. .++.|+|+.|+|.|.|++ ||.+..++ ..|
T Consensus 1 DidEC~~~~~~C~-----~~~~C~N~~Gsy~C~C~~--Gy~~~~~~-~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCP-----ENGTCVNTEGSYSCSCPP--GYELNDDG-TTC 42 (42)
T ss_dssp ESSTTTTTSSSSS-----TTSEEEEETTEEEEEEST--TEEECTTS-SEE
T ss_pred CccccCCCCCcCC-----CCCEEEcCCCCEEeeCCC--CcEECCCC-CcC
Confidence 6899999888897 569999999999999999 88866555 443
No 34
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.29 E-value=2.2e-06 Score=77.94 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=53.5
Q ss_pred cccccCCCCCCCCceeeEEccCC--CcCCCCCCCCCCCccccCCCCCCcEEEEeCCCc------------------cHHH
Q 006786 51 AIGNFGIPQYGGSMAGAVTYPKE--NRKGCREFGDFGISFKAKPGALPNFVLVDRGDC------------------FFAL 110 (631)
Q Consensus 51 ~~a~FG~~~~~~~~~g~l~~~~~--~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C------------------~F~~ 110 (631)
.+.+|+. ...+.+.+|+... ...+|.--++.+.+++ ||||||.||.| +|..
T Consensus 10 ~~~~~~~---~~~~~aelVfvGyGi~a~~~~~dDYag~DVk------GKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~ 80 (142)
T cd04814 10 AMLNVDA---VAIKDAPLVFVGYGIKAPELSWDDYAGLDVK------GKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTY 80 (142)
T ss_pred cccCCCC---ccccceeeEEecCCcCCCCCChhhcCCCCCC------CcEEEEEcCCCCcccccccccccccccccCHHH
Confidence 3555653 2457788887532 2346665555555665 99999999999 6999
Q ss_pred HHHHHHHcCCcEEEEEECCC
Q 006786 111 KVWNAQKAGASAVLVADDIE 130 (631)
Q Consensus 111 Kv~~Aq~aGA~avIi~n~~~ 130 (631)
|+.+|+++||+||||+++.+
T Consensus 81 K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 81 KYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred HHHHHHHCCCcEEEEEeCCC
Confidence 99999999999999999875
No 35
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.16 E-value=6.3e-06 Score=74.54 Aligned_cols=64 Identities=19% Similarity=0.112 Sum_probs=49.9
Q ss_pred CCCceeeEEccC--CCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcc------------HHHHHHHHHHcCCcEEEEE
Q 006786 61 GGSMAGAVTYPK--ENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCF------------FALKVWNAQKAGASAVLVA 126 (631)
Q Consensus 61 ~~~~~g~l~~~~--~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~------------F~~Kv~~Aq~aGA~avIi~ 126 (631)
.+.++|.+|+.. ....+|..-++.+.+++ ||||||+||.|. |..|+++|+++||+||||+
T Consensus 19 ~g~v~gelVfvGyG~~~~~~~~~Dy~~iDVk------GKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~ 92 (137)
T cd04820 19 AASVEAPLVFVGYGLVAPELGHDDYAGLDVK------GKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITL 92 (137)
T ss_pred CCCceEeEEEecCCcCccCcCHhhccCCCCC------CeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEE
Confidence 356889988753 23456665554444565 999999999995 8899999999999999999
Q ss_pred ECCC
Q 006786 127 DDIE 130 (631)
Q Consensus 127 n~~~ 130 (631)
++..
T Consensus 93 ~d~~ 96 (137)
T cd04820 93 TTPR 96 (137)
T ss_pred eCCc
Confidence 9864
No 36
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=3.3e-06 Score=82.16 Aligned_cols=57 Identities=30% Similarity=0.743 Sum_probs=46.6
Q ss_pred eeeCCCCee-eCCCCcccCCccCcccCccccCC-CCCCCCCCeeeeCCCceEEeCCCCccc
Q 006786 496 CLDSENGKC-QCPPGFKGDGVKSCVDIDECKER-KACQCSECSCKDTWGSYECTCSGDLLY 554 (631)
Q Consensus 496 C~~~~~~~C-~C~~Gf~g~~~~~C~dideC~~~-~~C~~~~~~C~n~~Gsy~C~C~~G~~~ 554 (631)
|....+..| .|..||..+. .+|.|||||... .+|. +++.|+|+.|||+|.+++||..
T Consensus 211 Csg~~~k~C~kCkkGW~lde-~gCvDvnEC~~ep~~c~-~~qfCvNteGSf~C~dk~Gy~~ 269 (350)
T KOG4260|consen 211 CSGESSKGCSKCKKGWKLDE-EGCVDVNECQNEPAPCK-AHQFCVNTEGSFKCEDKEGYKK 269 (350)
T ss_pred cCCCCCCChhhhcccceecc-cccccHHHHhcCCCCCC-hhheeecCCCceEecccccccC
Confidence 443334455 4999999885 459999999876 6898 8899999999999999999975
No 37
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.03 E-value=1.2e-05 Score=73.01 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=66.4
Q ss_pred CCCCceeeEEccCC--CcCCCCCCCCCCCccccCCCCCCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEECCCCCc----
Q 006786 60 YGGSMAGAVTYPKE--NRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEAL---- 133 (631)
Q Consensus 60 ~~~~~~g~l~~~~~--~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~~~~---- 133 (631)
..+.++|.+||..- ..|- +.+.. ..+++ |||+|++.|.-++..||+|||++||+|||||.|..+.-
T Consensus 11 ~sG~Vtg~~VYvNyG~~eDf-~~L~~-~V~v~------GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~ 82 (153)
T cd02131 11 AKGTLQAEVVDVQYGSVEDL-RRIRD-NMNVT------NQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRH 82 (153)
T ss_pred CCCceEEEEEEecCCCHHHH-HHHHh-CCCcc------ceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCC
Confidence 34568999998521 0000 01111 12343 99999999999999999999999999999998753221
Q ss_pred -----ee-cCC--CCCccccc---------cccCcccccEEEEcHHHHHHHHHHHc
Q 006786 134 -----IT-MDT--PEEDISSA---------KYIENITIPSALIDKSFGETLKKALS 172 (631)
Q Consensus 134 -----~~-m~~--~~~~~~~~---------~~~~~i~IP~~~i~~~~G~~l~~~l~ 172 (631)
.. +.. ++.-|.+. ....-.+||+.=|+..|+..|+++-.
T Consensus 83 ~~~~v~~v~~~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~~ 138 (153)
T cd02131 83 TWHQAFMVSLNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPP 138 (153)
T ss_pred CccceEEEecCCCCCCCCCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCCc
Confidence 00 111 11111000 00123589999999999999887654
No 38
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=97.95 E-value=3.9e-05 Score=84.80 Aligned_cols=149 Identities=26% Similarity=0.549 Sum_probs=99.4
Q ss_pred CCCceeeeccCCCCcCCCCccccCCcccccccccCCCCCCCCCCCCccccccCCCceeeeecCCCCeeEeCCCc----ce
Q 006786 392 EKGAVLKAICSGFEETTEPAVCLSGDVETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGY----SH 467 (631)
Q Consensus 392 ~~~~~~c~cc~Gf~~~~~~~~C~~~~~d~deC~~~~~~C~~~~~~~~~~C~n~~gs~~C~C~~~~G~~~~~dg~----~~ 467 (631)
....+.|.|..||. ...|.. +.++|......|. +...|.+..++|.|.|++ ||....... ..
T Consensus 148 ~~~~~~c~C~~g~~----~~~~~~---~~~~C~~~~~~c~-----~~~~C~~~~~~~~C~c~~--~~~~~~~~~~~~~~~ 213 (487)
T KOG1217|consen 148 SVGPFRCSCTEGYE----GEPCET---DLDECIQYSSPCQ-----NGGTCVNTGGSYLCSCPP--GYTGSTCETTGNGGT 213 (487)
T ss_pred CCCceeeeeCCCcc----cccccc---cccccccCCCCcC-----CCcccccCCCCeeEeCCC--CccCCcCcCCCCCce
Confidence 34578899999997 445553 3378986666787 668999999999999999 554332210 11
Q ss_pred ecccCCCccccC----CCCCCCCCCCCCcc-ceeeeCC-CCeeeCCCCcccCCccCcccCccccCCCCCCCCCCeeeeCC
Q 006786 468 CEVSGPGKCKIN----NGGCWHESKDGHTY-SACLDSE-NGKCQCPPGFKGDGVKSCVDIDECKERKACQCSECSCKDTW 541 (631)
Q Consensus 468 C~~~~~~~C~~~----~~~C~~~~~~~~~~-~~C~~~~-~~~C~C~~Gf~g~~~~~C~dideC~~~~~C~~~~~~C~n~~ 541 (631)
|.+. ..|... ...|......+... +.|.+.. ++.|.|++||.+.....|.++++|.....|. ++++|.+..
T Consensus 214 c~~~--~~~~~~~g~~~~~c~~~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~-~~~~C~~~~ 290 (487)
T KOG1217|consen 214 CVDS--VACSCPPGARGPECEVSIVECASGDGTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCP-NGGTCVNVP 290 (487)
T ss_pred Eecc--eeccCCCCCCCCCcccccccccCCCCcccccCCceeeeCCCCccccccceeeeccccCCCCccC-CCCeeecCC
Confidence 2211 001100 00111110111111 5688888 8999999999988622388999999872387 789999999
Q ss_pred CceEEeCCCCccccCC
Q 006786 542 GSYECTCSGDLLYIRD 557 (631)
Q Consensus 542 Gsy~C~C~~G~~~~~~ 557 (631)
++|.|.|++||.....
T Consensus 291 ~~~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 291 GSYRCTCPPGFTGRLC 306 (487)
T ss_pred CcceeeCCCCCCCCCC
Confidence 9999999999986554
No 39
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.92 E-value=7.5e-06 Score=55.91 Aligned_cols=31 Identities=35% Similarity=0.778 Sum_probs=27.3
Q ss_pred CCCCCCCCeeeeCCCceEEeCCCCccccCCCCcc
Q 006786 528 KACQCSECSCKDTWGSYECTCSGDLLYIRDHDTC 561 (631)
Q Consensus 528 ~~C~~~~~~C~n~~Gsy~C~C~~G~~~~~~g~~C 561 (631)
+.|+ +.|+|++|+|+|.|++||.+..|+++|
T Consensus 6 GgC~---h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 6 GGCS---HICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp GGSS---SEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCcC---CCCccCCCceEeECCCCCEECcCCCCC
Confidence 5788 999999999999999999999999987
No 40
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=1.7e-05 Score=77.30 Aligned_cols=88 Identities=26% Similarity=0.668 Sum_probs=68.2
Q ss_pred CCceee-eecCCCCeeEeCCCcceecccCCCccccCCCCCCCCCCCCCccceeeeCC-CCeeeCCCCcccCCccCcccCc
Q 006786 445 FRGRVC-ECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACLDSE-NGKCQCPPGFKGDGVKSCVDID 522 (631)
Q Consensus 445 ~gs~~C-~C~~~~G~~~~~dg~~~C~~~~~~~C~~~~~~C~~~~~~~~~~~~C~~~~-~~~C~C~~Gf~g~~~~~C~did 522 (631)
.++..| .|.. |+.+...+ |.|+ |+|...+.+|... ..|+|+. +|.|.+.+||.+. +|
T Consensus 214 ~~~k~C~kCkk--GW~lde~g---CvDv--nEC~~ep~~c~~~-------qfCvNteGSf~C~dk~Gy~~g-------~d 272 (350)
T KOG4260|consen 214 ESSKGCSKCKK--GWKLDEEG---CVDV--NECQNEPAPCKAH-------QFCVNTEGSFKCEDKEGYKKG-------VD 272 (350)
T ss_pred CCCCChhhhcc--cceecccc---cccH--HHHhcCCCCCChh-------heeecCCCceEecccccccCC-------hH
Confidence 344557 7888 77766555 9988 9999887778665 7799999 9999999999762 56
Q ss_pred cccCC-CCCCCCCCeeeeCCCceEEeCCCCcc
Q 006786 523 ECKER-KACQCSECSCKDTWGSYECTCSGDLL 553 (631)
Q Consensus 523 eC~~~-~~C~~~~~~C~n~~Gsy~C~C~~G~~ 553 (631)
+|..- ..|.-.+..|.|+.|+|+|.|..|+.
T Consensus 273 ~C~~~~d~~~~kn~~c~ni~~~~r~v~f~~~~ 304 (350)
T KOG4260|consen 273 ECQFCADVCASKNRPCMNIDGQYRCVCFSGLI 304 (350)
T ss_pred HhhhhhhhcccCCCCcccCCccEEEEecccce
Confidence 66551 25554567899999999999999976
No 41
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.81 E-value=1.5e-05 Score=54.44 Aligned_cols=36 Identities=42% Similarity=0.919 Sum_probs=29.9
Q ss_pred cccCCCCCCCCCCCCccccccCCCceeeeecCCCCeeEeCCCccee
Q 006786 423 CLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHC 468 (631)
Q Consensus 423 C~~~~~~C~~~~~~~~~~C~n~~gs~~C~C~~~~G~~~~~dg~~~C 468 (631)
|...+++|. +.|++++++|+|.|++ ||.+..|+ ++|
T Consensus 1 C~~~NGgC~-------h~C~~~~g~~~C~C~~--Gy~L~~D~-~tC 36 (36)
T PF14670_consen 1 CSVNNGGCS-------HICVNTPGSYRCSCPP--GYKLAEDG-RTC 36 (36)
T ss_dssp CTTGGGGSS-------SEEEEETTSEEEE-ST--TEEE-TTS-SSE
T ss_pred CCCCCCCcC-------CCCccCCCceEeECCC--CCEECcCC-CCC
Confidence 455678898 8999999999999999 99999999 766
No 42
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=97.78 E-value=2.3e-05 Score=72.90 Aligned_cols=137 Identities=26% Similarity=0.504 Sum_probs=83.7
Q ss_pred ceeeeccCCCCcCCCCccccCCcccccccccC---CCCCCCCCCCCccccccCC-----CceeeeecCCCCeeEeCCCcc
Q 006786 395 AVLKAICSGFEETTEPAVCLSGDVETNECLDN---NGGCWQDKTANVTACKDTF-----RGRVCECPLVDGVQFKGDGYS 466 (631)
Q Consensus 395 ~~~c~cc~Gf~~~~~~~~C~~~~~d~deC~~~---~~~C~~~~~~~~~~C~n~~-----gs~~C~C~~~~G~~~~~dg~~ 466 (631)
-+.|.|-+||... ...+|+ ...+|... ...|. +.+.|.+.. ..|.|.|.+ ||.+..+-
T Consensus 19 HfEC~Cnegfvl~-~EntCE----~kv~C~~~e~~~K~Cg-----dya~C~~~~~~~~~~~~~C~C~~--gY~~~~~v-- 84 (197)
T PF06247_consen 19 HFECKCNEGFVLK-NENTCE----EKVECDKLENVNKPCG-----DYAKCINQANKGEERAYKCDCIN--GYILKQGV-- 84 (197)
T ss_dssp EEEEEESTTEEEE-ETTEEE----E----SG-GGTTSEEE-----TTEEEEE-SSTTSSTSEEEEE-T--TEEESSSS--
T ss_pred ceEEEcCCCcEEc-cccccc----cceecCcccccCcccc-----chhhhhcCCCcccceeEEEeccc--CceeeCCe--
Confidence 3567888999875 567899 47788652 33576 679999875 579999999 98887654
Q ss_pred eecccCCCccccCCCCCCCCCCCCCccceeeeCC----CCeeeCCCCcccCCccCcc--cCccccCCCCCCCCCCeeeeC
Q 006786 467 HCEVSGPGKCKINNGGCWHESKDGHTYSACLDSE----NGKCQCPPGFKGDGVKSCV--DIDECKERKACQCSECSCKDT 540 (631)
Q Consensus 467 ~C~~~~~~~C~~~~~~C~~~~~~~~~~~~C~~~~----~~~C~C~~Gf~g~~~~~C~--dideC~~~~~C~~~~~~C~n~ 540 (631)
|.. ++|... .|.. +.|+-.+ ...|+|.-|+..+....|. .-.+|... |. .+..|..+
T Consensus 85 -Cvp---~~C~~~--~Cg~--------GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~T~C~LK--Ck-~nE~CK~~ 147 (197)
T PF06247_consen 85 -CVP---NKCNNK--DCGS--------GKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGETKCSLK--CK-ENEECKLV 147 (197)
T ss_dssp -EEE---GGGSS-----TT--------EEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE----------T-TTEEEEEE
T ss_pred -Ech---hhcCce--ecCC--------CeEEecCCCCCCceeEeeeceEeccCCcccCCCccceeee--cC-CCcceeee
Confidence 774 467633 5543 6786443 4599999999944433475 23356654 76 77899999
Q ss_pred CCceEEeCCCCccccCCCCccc
Q 006786 541 WGSYECTCSGDLLYIRDHDTCI 562 (631)
Q Consensus 541 ~Gsy~C~C~~G~~~~~~g~~C~ 562 (631)
.+-|+|.|.+|+....++..+.
T Consensus 148 ~~~Y~C~~~~~~~~~~~~~~~~ 169 (197)
T PF06247_consen 148 DGYYKCVCKEGFPGDGEGEGCG 169 (197)
T ss_dssp TTEEEEEE-TT-EEETTT----
T ss_pred CcEEEeecCCCCCCCCCccccc
Confidence 9999999999998887776554
No 43
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=97.77 E-value=0.0001 Score=81.46 Aligned_cols=150 Identities=25% Similarity=0.526 Sum_probs=105.8
Q ss_pred cccccCCCceeeeccCCCCcCCCCccccCCcccccccccCCCCCCCCCCCCccccccCCCceeeeecCCCCeeEeCCCcc
Q 006786 387 YRGKLEKGAVLKAICSGFEETTEPAVCLSGDVETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYS 466 (631)
Q Consensus 387 ~~c~~~~~~~~c~cc~Gf~~~~~~~~C~~~~~d~deC~~~~~~C~~~~~~~~~~C~n~~gs~~C~C~~~~G~~~~~dg~~ 466 (631)
.+|.+..+.+.|.|..||.... ...|. ++++|..... |. +++.|.+..+.|.|.|++ || .+..-.
T Consensus 243 ~~c~~~~~~~~C~~~~g~~~~~-~~~~~----~~~~C~~~~~-c~-----~~~~C~~~~~~~~C~C~~--g~--~g~~~~ 307 (487)
T KOG1217|consen 243 GTCVNTVGSYTCRCPEGYTGDA-CVTCV----DVDSCALIAS-CP-----NGGTCVNVPGSYRCTCPP--GF--TGRLCT 307 (487)
T ss_pred CcccccCCceeeeCCCCccccc-cceee----eccccCCCCc-cC-----CCCeeecCCCcceeeCCC--CC--CCCCCc
Confidence 6678888889999999997421 03456 6899987765 87 569999999999999999 54 443301
Q ss_pred eecccCCCcccc--CCCCCCCCCCCCCccceee--eCC-CCeeeCCCCcccCCccCcccCc-cccCCCCCCCCCCeeee-
Q 006786 467 HCEVSGPGKCKI--NNGGCWHESKDGHTYSACL--DSE-NGKCQCPPGFKGDGVKSCVDID-ECKERKACQCSECSCKD- 539 (631)
Q Consensus 467 ~C~~~~~~~C~~--~~~~C~~~~~~~~~~~~C~--~~~-~~~C~C~~Gf~g~~~~~C~did-eC~~~~~C~~~~~~C~n- 539 (631)
.|.+. .+|.. ....|... +.|. ... .+.|.|..||.|.. |++.+ +|... +|. .++.|.+
T Consensus 308 ~~~~~--~~C~~~~~~~~c~~g-------~~C~~~~~~~~~~C~c~~~~~g~~---C~~~~~~C~~~-~~~-~~~~c~~~ 373 (487)
T KOG1217|consen 308 ECVDV--DECSPRNAGGPCANG-------GTCNTLGSFGGFRCACGPGFTGRR---CEDSNDECASS-PCC-PGGTCVNE 373 (487)
T ss_pred ccccc--ccccccccCCcCCCC-------cccccCCCCCCCCcCCCCCCCCCc---cccCCccccCC-ccc-cCCEeccC
Confidence 23332 56753 22345543 4572 223 67899999977765 98884 99987 666 7799999
Q ss_pred CCCceEEeCCCCcccc--CCCCccccCC
Q 006786 540 TWGSYECTCSGDLLYI--RDHDTCISKT 565 (631)
Q Consensus 540 ~~Gsy~C~C~~G~~~~--~~g~~C~~~~ 565 (631)
..++|.|.|+.+|... .++..|....
T Consensus 374 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 401 (487)
T KOG1217|consen 374 TPGSYRCACPAGFAGKANGDGVGCEDID 401 (487)
T ss_pred CCCCeEecCCCccccCCccccccccccc
Confidence 7999999999998753 4455555443
No 44
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.60 E-value=4.2e-05 Score=52.34 Aligned_cols=31 Identities=35% Similarity=0.780 Sum_probs=24.5
Q ss_pred CCCCCCCCeeeeCCCceEEeCCCCccccCCCCcc
Q 006786 528 KACQCSECSCKDTWGSYECTCSGDLLYIRDHDTC 561 (631)
Q Consensus 528 ~~C~~~~~~C~n~~Gsy~C~C~~G~~~~~~g~~C 561 (631)
+.|+ ++++|+|+.++|.|+|++||. +||..|
T Consensus 6 ~~C~-~nA~C~~~~~~~~C~C~~Gy~--GdG~~C 36 (36)
T PF12947_consen 6 GGCH-PNATCTNTGGSYTCTCKPGYE--GDGFFC 36 (36)
T ss_dssp GGS--TTCEEEE-TTSEEEEE-CEEE--CCSTCE
T ss_pred CCCC-CCcEeecCCCCEEeECCCCCc--cCCcCC
Confidence 6899 899999999999999999988 666665
No 45
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.52 E-value=0.00012 Score=51.00 Aligned_cols=38 Identities=42% Similarity=0.934 Sum_probs=31.2
Q ss_pred cCccccCCCCCCCCCCeeeeCCCceEEeCCCCccccCCCCcc
Q 006786 520 DIDECKERKACQCSECSCKDTWGSYECTCSGDLLYIRDHDTC 561 (631)
Q Consensus 520 dideC~~~~~C~~~~~~C~n~~Gsy~C~C~~G~~~~~~g~~C 561 (631)
|+|||....+|. +++.|+|+.|+|.|.|++||. ++..|
T Consensus 1 d~~~C~~~~~C~-~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 1 DIDECASGNPCQ-NGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred CcccCcCCCCcC-CCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 578898733898 778999999999999999997 45555
No 46
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.42 E-value=0.00013 Score=49.93 Aligned_cols=36 Identities=42% Similarity=1.002 Sum_probs=27.3
Q ss_pred cccCCCCCCCCCCCCccccccCCCceeeeecCCCCeeEeCCCccee
Q 006786 423 CLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHC 468 (631)
Q Consensus 423 C~~~~~~C~~~~~~~~~~C~n~~gs~~C~C~~~~G~~~~~dg~~~C 468 (631)
|..++++|. .++.|+++.++|.|+|++ +|.||| ..|
T Consensus 1 C~~~~~~C~-----~nA~C~~~~~~~~C~C~~----Gy~GdG-~~C 36 (36)
T PF12947_consen 1 CLENNGGCH-----PNATCTNTGGSYTCTCKP----GYEGDG-FFC 36 (36)
T ss_dssp TTTGGGGS------TTCEEEE-TTSEEEEE-C----EEECCS-TCE
T ss_pred CCCCCCCCC-----CCcEeecCCCCEEeECCC----CCccCC-cCC
Confidence 456677898 559999999999999999 888998 544
No 47
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M36 (fungalysin family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Fungalysin is produced by fungi, Aspergillus and other species, to aid degradation of host lung cell walls on infection. The enzyme is a 42kDa single chain protein, with a pH optimum of 7.5-8.0 and optimal temperature of 60 celcius [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005615 extracellular space
Probab=97.16 E-value=7.6e-05 Score=77.98 Aligned_cols=148 Identities=18% Similarity=0.220 Sum_probs=97.5
Q ss_pred eEEEEeecCCccc----chhhhHHHHHHHhhHHHHHHhcCCceeEEEEEEEeccCcccccc---hhhhcccccCCcccCC
Q 006786 195 EYELWTNSNDECG----VKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLS---RQCKSQCINHGRYCAP 267 (631)
Q Consensus 195 ~~~~~~~s~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~~~~f~p~~~~~~c~~~~~~~---~~~~~~Ci~~Gryc~~ 267 (631)
||.|..+ +.+.| ..|+.+. -...| +|||+||+.++++.+-.+..... ......=...|+.+|+
T Consensus 192 Ey~HGiS-nRLvgG~~~s~cL~~~--------e~~~m-GEGWsD~~Al~~~~~~~d~~~~~~~~G~y~~~~~~~g~GIR~ 261 (378)
T PF02128_consen 192 EYGHGIS-NRLVGGPANSSCLQNL--------ESGGM-GEGWSDFFALMMTMKPGDTRDTDYGIGTYVTGNPTDGAGIRR 261 (378)
T ss_pred eeccccc-ccccCCCccccccccc--------ccCCC-cccHHHHHHHHheecccccCCCCceeeeeecCCccccccccc
Confidence 8888754 44444 1343221 13455 58999999999988754321110 0111111235788999
Q ss_pred CC-CCCCCCC-CCcchhHHHHHHhhhhhhhcccCCCCchh--------hhHHHHhcccCCCCchhhhHHHHHHHHHHcCC
Q 006786 268 DP-EQDFSSG-YEGKDVVLENLRQLCVFKVAKESKKPWVW--------WDYVTDFQIRCPMKDKKYNKECAAAVIKSLGL 337 (631)
Q Consensus 268 dp-~~~~~~~-~~g~dvv~e~lrq~Ci~~~~~~~~~~~~w--------w~Y~~~f~~~C~~~~~~y~~~C~~~v~~~~~i 337 (631)
.| ++|++.+ ++.+++....+ ...+.+|.+| |.+|.++++.= ..|+.+.++.++++|.+
T Consensus 262 ~pYSt~~~~Np~tY~~i~~~~~--------~~~H~~GeVWA~~Lwe~~~~Lv~~~G~~~----~~~~~~~Gn~~~~~lv~ 329 (378)
T PF02128_consen 262 YPYSTDMTVNPLTYGDIGRDGV--------SEVHAIGEVWATMLWEVYWALVDKHGFSP----DLYNGTGGNNRAMQLVV 329 (378)
T ss_pred ccccCCcCCCCCcHhhhccCcc--------cccccCcchHHHHHHHHHHHHHHHhCCCC----cccccccHHHHHHHHHH
Confidence 99 7787755 56666621111 1123566677 89999999965 35666669999999999
Q ss_pred CHhhhccccCCCCCCCCchhhHHHHHhh
Q 006786 338 DAKKIEKCMGDPDADADNPVLKEEQDAQ 365 (631)
Q Consensus 338 d~~~i~~C~~ds~~d~~n~iL~~e~~~q 365 (631)
|..+++.| ..++.+.++.||.+++...
T Consensus 330 dgmklqPc-nPtf~daRDAIl~Ad~~~~ 356 (378)
T PF02128_consen 330 DGMKLQPC-NPTFVDARDAILQADQALY 356 (378)
T ss_pred HHHhcCCC-CCChHHHHHHHHHHHHHHh
Confidence 99999999 2448899999999988754
No 48
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.12 E-value=0.00025 Score=43.56 Aligned_cols=22 Identities=41% Similarity=0.865 Sum_probs=20.6
Q ss_pred ceeeeecCCCCeeEeCCCcceeccc
Q 006786 447 GRVCECPLVDGVQFKGDGYSHCEVS 471 (631)
Q Consensus 447 s~~C~C~~~~G~~~~~dg~~~C~~~ 471 (631)
||+|+|++ ||.+..|+ ++|++|
T Consensus 1 sy~C~C~~--Gy~l~~d~-~~C~DI 22 (24)
T PF12662_consen 1 SYTCSCPP--GYQLSPDG-RSCEDI 22 (24)
T ss_pred CEEeeCCC--CCcCCCCC-CccccC
Confidence 69999999 99999999 999987
No 49
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=96.90 E-value=0.00082 Score=41.31 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=20.9
Q ss_pred ceEEeCCCCccccCCCCccccCC
Q 006786 543 SYECTCSGDLLYIRDHDTCISKT 565 (631)
Q Consensus 543 sy~C~C~~G~~~~~~g~~C~~~~ 565 (631)
||+|.|++||.+..++++|....
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DId 23 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDID 23 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCC
Confidence 69999999999999999998753
No 50
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=96.59 E-value=0.0019 Score=44.74 Aligned_cols=33 Identities=33% Similarity=0.751 Sum_probs=26.2
Q ss_pred cccccccCCCCCCCCCCCCccccccCCCceeeeecCCCCee
Q 006786 419 ETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQ 459 (631)
Q Consensus 419 d~deC~~~~~~C~~~~~~~~~~C~n~~gs~~C~C~~~~G~~ 459 (631)
|+|+|... ..|. +++.|.++.++|.|.|++ ||.
T Consensus 1 d~~~C~~~-~~C~-----~~~~C~~~~g~~~C~C~~--g~~ 33 (39)
T smart00179 1 DIDECASG-NPCQ-----NGGTCVNTVGSYRCECPP--GYT 33 (39)
T ss_pred CcccCcCC-CCcC-----CCCEeECCCCCeEeECCC--CCc
Confidence 47888763 4587 557999999999999999 654
No 51
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=96.59 E-value=0.0029 Score=43.32 Aligned_cols=34 Identities=41% Similarity=0.874 Sum_probs=28.1
Q ss_pred cCccccCCCCCCCCCCeeeeCCCceEEeCCCCccc
Q 006786 520 DIDECKERKACQCSECSCKDTWGSYECTCSGDLLY 554 (631)
Q Consensus 520 dideC~~~~~C~~~~~~C~n~~Gsy~C~C~~G~~~ 554 (631)
++++|....+|. +++.|.++.++|.|.|++||..
T Consensus 1 ~~~~C~~~~~C~-~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 1 DIDECASGNPCQ-NGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred CcccCCCCCCcC-CCCEeECCCCCeEeECCCCCcC
Confidence 467887623787 7789999999999999999873
No 52
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.50 E-value=0.0021 Score=63.90 Aligned_cols=39 Identities=36% Similarity=0.732 Sum_probs=34.1
Q ss_pred cccCccccCC-CCCCCCCCeeeeCCCceEEeCCCCccccCCCC
Q 006786 518 CVDIDECKER-KACQCSECSCKDTWGSYECTCSGDLLYIRDHD 559 (631)
Q Consensus 518 C~dideC~~~-~~C~~~~~~C~n~~Gsy~C~C~~G~~~~~~g~ 559 (631)
|.+++||... +.|. +.|.|+.|+|.|.|+.||.+..++.
T Consensus 184 C~~~~~C~~~~~~c~---~~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 184 CVVPDLCATLSHVCQ---QVCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred CcCchhhcCCCCCcc---ceEEcCCCCEEeECCCCccCCCCCC
Confidence 8889999865 6787 8999999999999999999877764
No 53
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=96.32 E-value=0.0027 Score=42.32 Aligned_cols=29 Identities=31% Similarity=0.749 Sum_probs=25.0
Q ss_pred ccCCCCCCCCCCeeeeCC-CceEEeCCCCccc
Q 006786 524 CKERKACQCSECSCKDTW-GSYECTCSGDLLY 554 (631)
Q Consensus 524 C~~~~~C~~~~~~C~n~~-Gsy~C~C~~G~~~ 554 (631)
|.++ +|. ++++|++.. ++|.|.|++||..
T Consensus 1 C~~~-~C~-n~g~C~~~~~~~y~C~C~~G~~G 30 (32)
T PF00008_consen 1 CSSN-PCQ-NGGTCIDLPGGGYTCECPPGYTG 30 (32)
T ss_dssp TTTT-SST-TTEEEEEESTSEEEEEEBTTEES
T ss_pred CCCC-cCC-CCeEEEeCCCCCEEeECCCCCcc
Confidence 4445 898 889999999 9999999999973
No 54
>smart00181 EGF Epidermal growth factor-like domain.
Probab=95.63 E-value=0.016 Score=39.09 Aligned_cols=30 Identities=30% Similarity=0.697 Sum_probs=23.8
Q ss_pred ccCCCCCCCCCCeeeeCCCceEEeCCCCcccc
Q 006786 524 CKERKACQCSECSCKDTWGSYECTCSGDLLYI 555 (631)
Q Consensus 524 C~~~~~C~~~~~~C~n~~Gsy~C~C~~G~~~~ 555 (631)
|..+++|. ++ .|+++.++|.|.|++||.++
T Consensus 2 C~~~~~C~-~~-~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 2 CASGGPCS-NG-TCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCcCCCC-CC-EEECCCCCeEeECCCCCccC
Confidence 44423788 55 99999999999999999753
No 55
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=95.51 E-value=0.02 Score=38.41 Aligned_cols=26 Identities=31% Similarity=0.653 Sum_probs=22.9
Q ss_pred CCCCCCCeeeeCCCceEEeCCCCcccc
Q 006786 529 ACQCSECSCKDTWGSYECTCSGDLLYI 555 (631)
Q Consensus 529 ~C~~~~~~C~n~~Gsy~C~C~~G~~~~ 555 (631)
+|. +++.|+++.++|.|.|+.||...
T Consensus 7 ~C~-~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 7 PCS-NGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCC-CCCEEecCCCCeEeECCCCCccc
Confidence 777 77999999999999999999743
No 56
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=94.93 E-value=0.017 Score=57.49 Aligned_cols=43 Identities=21% Similarity=0.496 Sum_probs=36.4
Q ss_pred CCccccCCcccccccccCCCCCCCCCCCCccccccCCCceeeeecCCCCeeEeCCC
Q 006786 409 EPAVCLSGDVETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDG 464 (631)
Q Consensus 409 ~~~~C~~~~~d~deC~~~~~~C~~~~~~~~~~C~n~~gs~~C~C~~~~G~~~~~dg 464 (631)
....|. +++||...++.|. ..|.++.|+|.|.|++ ||.+..++
T Consensus 180 ~~~~C~----~~~~C~~~~~~c~-------~~C~~~~g~~~c~c~~--g~~~~~~~ 222 (224)
T cd01475 180 QGKICV----VPDLCATLSHVCQ-------QVCISTPGSYLCACTE--GYALLEDN 222 (224)
T ss_pred ccccCc----CchhhcCCCCCcc-------ceEEcCCCCEEeECCC--CccCCCCC
Confidence 356787 6899988888898 7899999999999999 88776665
No 57
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=94.79 E-value=0.045 Score=51.40 Aligned_cols=97 Identities=22% Similarity=0.482 Sum_probs=61.8
Q ss_pred cccccCCCceeeeecCCCCeeEeCCCcceecccCCCcccc---CCCCCCCCCCCCCccceeeeCC------CCeeeCCCC
Q 006786 439 TACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKI---NNGGCWHESKDGHTYSACLDSE------NGKCQCPPG 509 (631)
Q Consensus 439 ~~C~n~~gs~~C~C~~~~G~~~~~dg~~~C~~~~~~~C~~---~~~~C~~~~~~~~~~~~C~~~~------~~~C~C~~G 509 (631)
+......+.|.|.|.+ ||.+... .+|+.. .+|.. .+.+|... +.|.+.. .|.|.|.+|
T Consensus 11 G~LiQMSNHfEC~Cne--gfvl~~E--ntCE~k--v~C~~~e~~~K~Cgdy-------a~C~~~~~~~~~~~~~C~C~~g 77 (197)
T PF06247_consen 11 GYLIQMSNHFECKCNE--GFVLKNE--NTCEEK--VECDKLENVNKPCGDY-------AKCINQANKGEERAYKCDCING 77 (197)
T ss_dssp EEEEEESSEEEEEEST--TEEEEET--TEEEE------SG-GGTTSEEETT-------EEEEE-SSTTSSTSEEEEE-TT
T ss_pred CEEEEccCceEEEcCC--CcEEccc--cccccc--eecCcccccCccccch-------hhhhcCCCcccceeEEEecccC
Confidence 4455557889999999 9988854 479976 67764 23467665 8897653 689999999
Q ss_pred cccCCccCcccCccccCCCCCCCCCCeeeeCC---CceEEeCCCCcc
Q 006786 510 FKGDGVKSCVDIDECKERKACQCSECSCKDTW---GSYECTCSGDLL 553 (631)
Q Consensus 510 f~g~~~~~C~dideC~~~~~C~~~~~~C~n~~---Gsy~C~C~~G~~ 553 (631)
|...... |. .++|... .|. .+.|+-.+ ....|+|.-|+.
T Consensus 78 Y~~~~~v-Cv-p~~C~~~-~Cg--~GKCI~d~~~~~~~~CSC~IGkV 119 (197)
T PF06247_consen 78 YILKQGV-CV-PNKCNNK-DCG--SGKCILDPDNPNNPTCSCNIGKV 119 (197)
T ss_dssp EEESSSS-EE-EGGGSS----T--TEEEEEEEGGGSEEEEEE-TEEE
T ss_pred ceeeCCe-Ec-hhhcCce-ecC--CCeEEecCCCCCCceeEeeeceE
Confidence 9965532 53 2456554 554 57887433 355999999998
No 58
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=94.58 E-value=0.052 Score=47.48 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=27.7
Q ss_pred cCccccCC--CCCCCCCCeeeeCC--CceEEeCCCCccccCCCCcccc
Q 006786 520 DIDECKER--KACQCSECSCKDTW--GSYECTCSGDLLYIRDHDTCIS 563 (631)
Q Consensus 520 dideC~~~--~~C~~~~~~C~n~~--Gsy~C~C~~G~~~~~~g~~C~~ 563 (631)
++.+|.+. +.|- + +.|.-.+ ..+.|.|..||. |..|..
T Consensus 41 ~i~~Cp~ey~~YCl-H-G~C~yI~dl~~~~CrC~~GYt----GeRCEh 82 (139)
T PHA03099 41 AIRLCGPEGDGYCL-H-GDCIHARDIDGMYCRCSHGYT----GIRCQH 82 (139)
T ss_pred ccccCChhhCCEeE-C-CEEEeeccCCCceeECCCCcc----cccccc
Confidence 56677664 5676 4 5897655 889999999998 566754
No 59
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=94.37 E-value=0.031 Score=37.15 Aligned_cols=18 Identities=44% Similarity=0.827 Sum_probs=16.9
Q ss_pred CccccccCC-CceeeeecC
Q 006786 437 NVTACKDTF-RGRVCECPL 454 (631)
Q Consensus 437 ~~~~C~n~~-gs~~C~C~~ 454 (631)
++++|++.. ++|.|.|++
T Consensus 8 n~g~C~~~~~~~y~C~C~~ 26 (32)
T PF00008_consen 8 NGGTCIDLPGGGYTCECPP 26 (32)
T ss_dssp TTEEEEEESTSEEEEEEBT
T ss_pred CCeEEEeCCCCCEEeECCC
Confidence 679999998 999999999
No 60
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.28 E-value=0.064 Score=49.97 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=29.3
Q ss_pred CcEEEEeCCCccHH-------------------HHHHHHHHcCCcEEEEEECCC
Q 006786 96 PNFVLVDRGDCFFA-------------------LKVWNAQKAGASAVLVADDIE 130 (631)
Q Consensus 96 ~~i~Lv~RG~C~F~-------------------~Kv~~Aq~aGA~avIi~n~~~ 130 (631)
||||||.+|+=.|. .|...|+++||+|||++++..
T Consensus 50 GKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 50 GKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred CcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 89999998865443 499999999999999998753
No 61
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=93.88 E-value=0.053 Score=36.84 Aligned_cols=29 Identities=31% Similarity=0.721 Sum_probs=23.4
Q ss_pred ccccccCCCCCCCCCCCCccccccCCCceeeeecC
Q 006786 420 TNECLDNNGGCWQDKTANVTACKDTFRGRVCECPL 454 (631)
Q Consensus 420 ~deC~~~~~~C~~~~~~~~~~C~n~~gs~~C~C~~ 454 (631)
+|+|... ..|. +++.|.++.++|.|.|++
T Consensus 2 ~~~C~~~-~~C~-----~~~~C~~~~~~~~C~C~~ 30 (38)
T cd00054 2 IDECASG-NPCQ-----NGGTCVNTVGSYRCSCPP 30 (38)
T ss_pred cccCCCC-CCcC-----CCCEeECCCCCeEeECCC
Confidence 6788652 3486 558999999999999999
No 62
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=93.59 E-value=0.21 Score=55.12 Aligned_cols=37 Identities=32% Similarity=0.933 Sum_probs=20.3
Q ss_pred CeeeCCCCcccCCccCcccCccccCCCCCCCCCCeeeeCCCceEEeCCCCccc
Q 006786 502 GKCQCPPGFKGDGVKSCVDIDECKERKACQCSECSCKDTWGSYECTCSGDLLY 554 (631)
Q Consensus 502 ~~C~C~~Gf~g~~~~~C~dideC~~~~~C~~~~~~C~n~~Gsy~C~C~~G~~~ 554 (631)
-.|.|.+||+|.. |.-. .|+ .++.|+| | |.|..||+.
T Consensus 327 G~C~C~~Gy~G~~---C~~~-------~C~-~~g~cv~--g---C~C~~Gw~G 363 (525)
T KOG1225|consen 327 GECLCDEGYTGEL---CIQR-------ACS-GGGQCVN--G---CKCKKGWRG 363 (525)
T ss_pred CceEeCCCCcCCc---cccc-------ccC-CCceecc--C---ceeccCccC
Confidence 3566777776655 4322 133 3345544 2 677777763
No 63
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=92.53 E-value=0.28 Score=54.17 Aligned_cols=11 Identities=36% Similarity=1.277 Sum_probs=7.9
Q ss_pred eeCCCCcccCC
Q 006786 504 CQCPPGFKGDG 514 (631)
Q Consensus 504 C~C~~Gf~g~~ 514 (631)
|.|..||+|..
T Consensus 355 C~C~~Gw~G~d 365 (525)
T KOG1225|consen 355 CKCKKGWRGPD 365 (525)
T ss_pred ceeccCccCCC
Confidence 77777777655
No 64
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.84 E-value=0.31 Score=57.06 Aligned_cols=59 Identities=27% Similarity=0.607 Sum_probs=36.1
Q ss_pred CCee-eCCCCcccCCc-cCcc---cCccccCC-CCCCCCCCeeeeCCCceEE-eCCCCcccc---CCCCcccc
Q 006786 501 NGKC-QCPPGFKGDGV-KSCV---DIDECKER-KACQCSECSCKDTWGSYEC-TCSGDLLYI---RDHDTCIS 563 (631)
Q Consensus 501 ~~~C-~C~~Gf~g~~~-~~C~---dideC~~~-~~C~~~~~~C~n~~Gsy~C-~C~~G~~~~---~~g~~C~~ 563 (631)
+..| .|.+||-|-+. +.|+ --|+|.+. +.|- .|.+..+++.| +|..||.++ +.|..|.+
T Consensus 840 grqCnqCqpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi----~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrP 908 (1758)
T KOG0994|consen 840 GRQCNQCQPGYWGFPECRPCQCNGHADTCDPITGACI----DCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRP 908 (1758)
T ss_pred hhhccccCCCccCCCcCccccccCcccccCccccccc----cccccccccchhhhhccccCCcccCCCCCCCC
Confidence 5555 37777776552 2233 23445443 4443 56677788889 499999765 45666766
No 65
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=90.67 E-value=0.15 Score=34.80 Aligned_cols=30 Identities=27% Similarity=0.573 Sum_probs=20.8
Q ss_pred ccCCCCCCCCCCeeeeCC-CceEEeCCCCcccc
Q 006786 524 CKERKACQCSECSCKDTW-GSYECTCSGDLLYI 555 (631)
Q Consensus 524 C~~~~~C~~~~~~C~n~~-Gsy~C~C~~G~~~~ 555 (631)
|... .|. .++.|.+.. |+++|.|..||...
T Consensus 2 C~~~-~cP-~NA~C~~~~dG~eecrCllgyk~~ 32 (37)
T PF12946_consen 2 CIDT-KCP-ANAGCFRYDDGSEECRCLLGYKKV 32 (37)
T ss_dssp -SSS-----TTEEEEEETTSEEEEEE-TTEEEE
T ss_pred ccCc-cCC-CCcccEEcCCCCEEEEeeCCcccc
Confidence 4443 677 789999887 99999999999854
No 66
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=89.86 E-value=0.29 Score=32.49 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=17.7
Q ss_pred CccccccCCCceeeeecCCCCe
Q 006786 437 NVTACKDTFRGRVCECPLVDGV 458 (631)
Q Consensus 437 ~~~~C~n~~gs~~C~C~~~~G~ 458 (631)
+++.|.++.++|.|.|+. ||
T Consensus 10 ~~~~C~~~~~~~~C~C~~--g~ 29 (36)
T cd00053 10 NGGTCVNTPGSYRCVCPP--GY 29 (36)
T ss_pred CCCEEecCCCCeEeECCC--CC
Confidence 568999999999999999 55
No 67
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=89.41 E-value=5.6 Score=45.50 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHcC
Q 006786 161 KSFGETLKKALSG 173 (631)
Q Consensus 161 ~~~G~~l~~~l~~ 173 (631)
++-|..|...|+.
T Consensus 153 ~~LG~~L~~~m~~ 165 (783)
T KOG1226|consen 153 KSLGTDLAREMRK 165 (783)
T ss_pred HHHHHHHHHHHHH
Confidence 5678888887764
No 68
>smart00181 EGF Epidermal growth factor-like domain.
Probab=88.36 E-value=0.4 Score=32.07 Aligned_cols=24 Identities=38% Similarity=0.780 Sum_probs=19.2
Q ss_pred CCCCCCCCCCccccccCCCceeeeecCCCCee
Q 006786 428 GGCWQDKTANVTACKDTFRGRVCECPLVDGVQ 459 (631)
Q Consensus 428 ~~C~~~~~~~~~~C~n~~gs~~C~C~~~~G~~ 459 (631)
..|. ++ .|.++.++|.|.|++ ||.
T Consensus 6 ~~C~-----~~-~C~~~~~~~~C~C~~--g~~ 29 (35)
T smart00181 6 GPCS-----NG-TCINTPGSYTCSCPP--GYT 29 (35)
T ss_pred CCCC-----CC-EEECCCCCeEeECCC--CCc
Confidence 4476 44 899999999999999 554
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.29 E-value=1.5 Score=51.66 Aligned_cols=46 Identities=24% Similarity=0.514 Sum_probs=29.4
Q ss_pred ccCCCCcCCCCccccCCcccccccccCCCCCCCCCCCCccccccCCCceee-eecC
Q 006786 400 ICSGFEETTEPAVCLSGDVETNECLDNNGGCWQDKTANVTACKDTFRGRVC-ECPL 454 (631)
Q Consensus 400 cc~Gf~~~~~~~~C~~~~~d~deC~~~~~~C~~~~~~~~~~C~n~~gs~~C-~C~~ 454 (631)
|-+||..-+.-+.|.=. -..|+|.+..+-|. .|.+...+++| .|..
T Consensus 846 CqpG~WgFPeCr~CqCN-gHA~~Cd~~tGaCi--------~CqD~T~G~~CdrCl~ 892 (1758)
T KOG0994|consen 846 CQPGYWGFPECRPCQCN-GHADTCDPITGACI--------DCQDSTTGHSCDRCLD 892 (1758)
T ss_pred cCCCccCCCcCcccccc-CcccccCccccccc--------cccccccccchhhhhc
Confidence 44777644444444311 14577776666674 68888889999 7988
No 70
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=83.21 E-value=0.62 Score=24.27 Aligned_cols=12 Identities=58% Similarity=1.597 Sum_probs=9.2
Q ss_pred eeeCCCCcccCC
Q 006786 503 KCQCPPGFKGDG 514 (631)
Q Consensus 503 ~C~C~~Gf~g~~ 514 (631)
.|.|++||.|..
T Consensus 1 ~C~C~~G~~G~~ 12 (13)
T PF12661_consen 1 TCQCPPGWTGPN 12 (13)
T ss_dssp EEEE-TTEETTT
T ss_pred CccCcCCCcCCC
Confidence 489999999875
No 71
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=81.20 E-value=1.8 Score=37.08 Aligned_cols=45 Identities=20% Similarity=0.596 Sum_probs=30.0
Q ss_pred CccccCC-CCCCCCCCeeeeCC-----CceEEeCCCCcccc---------CCCCccccCCc
Q 006786 521 IDECKER-KACQCSECSCKDTW-----GSYECTCSGDLLYI---------RDHDTCISKTA 566 (631)
Q Consensus 521 ideC~~~-~~C~~~~~~C~n~~-----Gsy~C~C~~G~~~~---------~~g~~C~~~~~ 566 (631)
.++|... +.|. .|+.|++.. .=|.|.|.+..... .-|..|.-+..
T Consensus 5 ~~aC~~~Tn~Cs-gHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkDv 64 (103)
T PF12955_consen 5 NDACENATNNCS-GHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKKDV 64 (103)
T ss_pred HHHHHHhccCCC-CCceEeeccCCCccceEEEEeeccccccccccCceeeecccccccccc
Confidence 3456654 5788 889998873 34899999865432 23566776653
No 72
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=72.58 E-value=3.2 Score=27.74 Aligned_cols=25 Identities=16% Similarity=0.519 Sum_probs=17.0
Q ss_pred CCCCCCCeeeeCCCceEEeCCCCccccCC
Q 006786 529 ACQCSECSCKDTWGSYECTCSGDLLYIRD 557 (631)
Q Consensus 529 ~C~~~~~~C~n~~Gsy~C~C~~G~~~~~~ 557 (631)
.|. +.|.... .+.|.|++||.++.+
T Consensus 7 ~Cp---A~CDpn~-~~~C~CPeGyIlde~ 31 (34)
T PF09064_consen 7 ECP---ADCDPNS-PGQCFCPEGYILDEG 31 (34)
T ss_pred cCC---CccCCCC-CCceeCCCceEecCC
Confidence 566 6775432 238999999987643
No 73
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=70.62 E-value=6.5 Score=26.09 Aligned_cols=22 Identities=18% Similarity=0.619 Sum_probs=18.2
Q ss_pred CCCCCCCeeeeCCCceEEeCCCCcc
Q 006786 529 ACQCSECSCKDTWGSYECTCSGDLL 553 (631)
Q Consensus 529 ~C~~~~~~C~n~~Gsy~C~C~~G~~ 553 (631)
.|. .+++|++. ..+|.|.+||.
T Consensus 7 ~C~-~~G~C~~~--~g~C~C~~g~~ 28 (32)
T PF07974_consen 7 ICS-GHGTCVSP--CGRCVCDSGYT 28 (32)
T ss_pred ccC-CCCEEeCC--CCEEECCCCCc
Confidence 577 77899876 57899999997
No 74
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=68.31 E-value=4.9 Score=27.55 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=19.6
Q ss_pred CccccccCC-CceeeeecCCCCeeEeCC
Q 006786 437 NVTACKDTF-RGRVCECPLVDGVQFKGD 463 (631)
Q Consensus 437 ~~~~C~n~~-gs~~C~C~~~~G~~~~~d 463 (631)
.++.|.+.. |++.|.|.. ||...++
T Consensus 9 ~NA~C~~~~dG~eecrCll--gyk~~~~ 34 (37)
T PF12946_consen 9 ANAGCFRYDDGSEECRCLL--GYKKVGG 34 (37)
T ss_dssp TTEEEEEETTSEEEEEE-T--TEEEETT
T ss_pred CCcccEEcCCCCEEEEeeC--CccccCC
Confidence 458999886 999999999 8876654
No 75
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=61.78 E-value=4.8 Score=47.50 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=16.9
Q ss_pred CceEEeCCCCccccCCCCccccCCc
Q 006786 542 GSYECTCSGDLLYIRDHDTCISKTA 566 (631)
Q Consensus 542 Gsy~C~C~~G~~~~~~g~~C~~~~~ 566 (631)
....|.|..||.+ .+..|.+...
T Consensus 749 ~~~vC~C~~g~~l--~~~~c~~~~~ 771 (800)
T PTZ00214 749 NQGVCMCELDAVL--TKGVCVPAKE 771 (800)
T ss_pred cCCeEEeCCccee--cCCeeEeccc
Confidence 3568999999976 5568877543
No 76
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=61.29 E-value=7.5 Score=26.03 Aligned_cols=19 Identities=37% Similarity=0.906 Sum_probs=14.3
Q ss_pred eeeCCCCeeeCCCCcccCC
Q 006786 496 CLDSENGKCQCPPGFKGDG 514 (631)
Q Consensus 496 C~~~~~~~C~C~~Gf~g~~ 514 (631)
|.......|.||.||..+.
T Consensus 12 CDpn~~~~C~CPeGyIlde 30 (34)
T PF09064_consen 12 CDPNSPGQCFCPEGYILDE 30 (34)
T ss_pred cCCCCCCceeCCCceEecC
Confidence 5444456899999999765
No 77
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=60.37 E-value=4.6 Score=34.26 Aligned_cols=25 Identities=28% Similarity=0.105 Sum_probs=11.7
Q ss_pred CCCCcchhHHHHHHHHHHHhhhcccce
Q 006786 1 MESHGSITLKLFLGFLILSLNVHTSVS 27 (631)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~~~~~~~a 27 (631)
|++.. .|+|+|+|++||+.++.++|
T Consensus 1 MaSK~--~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKA--FLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhH--HHHHHHHHHHHHHHHhhhhh
Confidence 66333 24444454454444544444
No 78
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=57.56 E-value=1.4e+02 Score=35.47 Aligned_cols=19 Identities=32% Similarity=0.837 Sum_probs=13.1
Q ss_pred eeeCC-CCeee--CCCCcccCC
Q 006786 496 CLDSE-NGKCQ--CPPGFKGDG 514 (631)
Q Consensus 496 C~~~~-~~~C~--C~~Gf~g~~ 514 (631)
|.... +..|. ||.|-.|..
T Consensus 558 CaHf~dgp~CV~~CP~G~~G~~ 579 (1177)
T KOG1025|consen 558 CAHFRDGPHCVSDCPDGVTGPK 579 (1177)
T ss_pred hhhcCCCcchhccCCCcccCCC
Confidence 54444 66674 999988765
No 79
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=56.97 E-value=11 Score=43.54 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=32.6
Q ss_pred CCcEEEEeCCCccHHHHHHHHHHcCCcEEEEEECC
Q 006786 95 LPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDI 129 (631)
Q Consensus 95 ~~~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~ 129 (631)
.++|+|++-|.=.+..|+.||+.+||.+||||.+.
T Consensus 184 ~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~ 218 (702)
T KOG2195|consen 184 SGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDP 218 (702)
T ss_pred cCceEEEEccccchhhhHhhHHHhhcCcEEEeecc
Confidence 38999999999999999999999999999999764
No 80
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=56.80 E-value=18 Score=26.60 Aligned_cols=26 Identities=19% Similarity=0.658 Sum_probs=17.3
Q ss_pred ccCCCCCCCCCCeeeeCCCceEEeCCCCccc
Q 006786 524 CKERKACQCSECSCKDTWGSYECTCSGDLLY 554 (631)
Q Consensus 524 C~~~~~C~~~~~~C~n~~Gsy~C~C~~G~~~ 554 (631)
|.....|. .++.|++ -.|.|++||..
T Consensus 22 C~~~~qC~-~~s~C~~----g~C~C~~g~~~ 47 (52)
T PF01683_consen 22 CESDEQCI-GGSVCVN----GRCQCPPGYVE 47 (52)
T ss_pred CCCcCCCC-CcCEEcC----CEeECCCCCEe
Confidence 44333555 5677855 38999999864
No 81
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=53.97 E-value=4.4 Score=35.74 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=5.0
Q ss_pred eCCCCcccCC
Q 006786 505 QCPPGFKGDG 514 (631)
Q Consensus 505 ~C~~Gf~g~~ 514 (631)
.|++|+.-+.
T Consensus 35 ~Cp~G~sWs~ 44 (129)
T PF12191_consen 35 PCPRGSSWSA 44 (129)
T ss_dssp SS-SSEEEET
T ss_pred CCCCCCcCcc
Confidence 4666766443
No 82
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=53.87 E-value=12 Score=32.52 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=25.1
Q ss_pred cCccccCCCCCCCCCCeeeeCCCceEEeCCCCccc
Q 006786 520 DIDECKERKACQCSECSCKDTWGSYECTCSGDLLY 554 (631)
Q Consensus 520 dideC~~~~~C~~~~~~C~n~~Gsy~C~C~~G~~~ 554 (631)
..|+|...+.|. +.+.|. ...+..|.|.+||..
T Consensus 76 p~d~Cd~y~~CG-~~g~C~-~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 76 PKDQCDVYGFCG-PNGICN-SNNSPKCSCLPGFEP 108 (110)
T ss_pred cccCCCCccccC-CccEeC-CCCCCceECCCCcCC
Confidence 456787766898 889994 445667999999973
No 83
>PHA02887 EGF-like protein; Provisional
Probab=53.43 E-value=11 Score=32.73 Aligned_cols=25 Identities=24% Similarity=0.753 Sum_probs=19.1
Q ss_pred ceeeeCC---CCeeeCCCCcccCCccCcccC
Q 006786 494 SACLDSE---NGKCQCPPGFKGDGVKSCVDI 521 (631)
Q Consensus 494 ~~C~~~~---~~~C~C~~Gf~g~~~~~C~di 521 (631)
+.|.... ...|.|+.||.|.. |+.+
T Consensus 97 G~C~yI~dL~epsCrC~~GYtG~R---CE~v 124 (126)
T PHA02887 97 GECMNIIDLDEKFCICNKGYTGIR---CDEV 124 (126)
T ss_pred CEEEccccCCCceeECCCCcccCC---CCcc
Confidence 4676544 78999999999987 7644
No 84
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=50.43 E-value=5.6 Score=35.81 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhheeeeehhHH
Q 006786 573 WAAVWVILIGLAMAGGGAYLVYKYRLR 599 (631)
Q Consensus 573 ~~~~~~i~~~~~~~~~~~~~~~~~r~r 599 (631)
|++++++++.++|++++.+.+-++|+|
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444444444444433
No 85
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=50.22 E-value=19 Score=43.41 Aligned_cols=72 Identities=19% Similarity=0.351 Sum_probs=49.2
Q ss_pred CccccCCCCCCCCCCCCCccceeeeCC-CCeeeCCCCcccCCccCc-ccCccccCCCCCCCCCCeee-eCCCceEEeCCC
Q 006786 474 GKCKINNGGCWHESKDGHTYSACLDSE-NGKCQCPPGFKGDGVKSC-VDIDECKERKACQCSECSCK-DTWGSYECTCSG 550 (631)
Q Consensus 474 ~~C~~~~~~C~~~~~~~~~~~~C~~~~-~~~C~C~~Gf~g~~~~~C-~dideC~~~~~C~~~~~~C~-n~~Gsy~C~C~~ 550 (631)
++|......|.+. |.++. ...|.|..++...... . ...+++..++.|. +.|. +.++.|.|.|..
T Consensus 326 ~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~Cs---q~C~~~~p~~~~c~c~~ 392 (877)
T KOG1215|consen 326 NECAERVLKCSHK---------CPDVSVGPRCDCMGAKVLPLGA-RTDSNPCESDNGGCS---QLCVPNSPGTFKCACSP 392 (877)
T ss_pred ccchhhcccccCC---------CCccccCCcccCCccceecccc-cccCCcccccCCccc---eeccCCCCCceeEecCC
Confidence 4455444455444 66666 8889999888753311 1 1233444447898 9999 668999999999
Q ss_pred CccccCCC
Q 006786 551 DLLYIRDH 558 (631)
Q Consensus 551 G~~~~~~g 558 (631)
||.+..++
T Consensus 393 g~~~~~~~ 400 (877)
T KOG1215|consen 393 GYELRLDK 400 (877)
T ss_pred CcEeccCC
Confidence 99887666
No 86
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=47.02 E-value=14 Score=32.68 Aligned_cols=21 Identities=24% Similarity=0.770 Sum_probs=16.9
Q ss_pred ceeeeCC---CCeeeCCCCcccCC
Q 006786 494 SACLDSE---NGKCQCPPGFKGDG 514 (631)
Q Consensus 494 ~~C~~~~---~~~C~C~~Gf~g~~ 514 (631)
+.|.... .+.|.|..||.|..
T Consensus 56 G~C~yI~dl~~~~CrC~~GYtGeR 79 (139)
T PHA03099 56 GDCIHARDIDGMYCRCSHGYTGIR 79 (139)
T ss_pred CEEEeeccCCCceeECCCCccccc
Confidence 4576554 78999999999987
No 87
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=46.87 E-value=34 Score=39.45 Aligned_cols=45 Identities=27% Similarity=0.893 Sum_probs=24.7
Q ss_pred eeeCCCCcccCCccCc-ccCccccCC--CCCCCCCCeeeeCCCceEEeCCCC-cc
Q 006786 503 KCQCPPGFKGDGVKSC-VDIDECKER--KACQCSECSCKDTWGSYECTCSGD-LL 553 (631)
Q Consensus 503 ~C~C~~Gf~g~~~~~C-~dideC~~~--~~C~~~~~~C~n~~Gsy~C~C~~G-~~ 553 (631)
.|.|.+||+|.... | .+.|-|.+. ..|. ..++|.= -+|.|..+ |.
T Consensus 567 ~CvC~~GwtG~~C~-C~~std~C~~~~G~iCS-GrG~C~C----g~C~C~~~~~s 615 (783)
T KOG1226|consen 567 RCVCNPGWTGSACN-CPLSTDTCESSDGQICS-GRGTCEC----GRCKCTDPPYS 615 (783)
T ss_pred cEEcCCCCccCCCC-CCCCCccccCCCCceeC-CCceeeC----CceEcCCCCcC
Confidence 46777888877633 2 256667654 3455 3344432 14666655 44
No 88
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=46.41 E-value=8.3 Score=32.79 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=9.4
Q ss_pred eCCCCccccCCCCcccc
Q 006786 547 TCSGDLLYIRDHDTCIS 563 (631)
Q Consensus 547 ~C~~G~~~~~~g~~C~~ 563 (631)
.|..||.+. +..|..
T Consensus 41 ~C~~GY~~~--~~~Cv~ 55 (96)
T PTZ00382 41 ECNSGFSLD--NGKCVS 55 (96)
T ss_pred cCcCCcccC--CCcccc
Confidence 478888754 445644
No 89
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.50 E-value=6.7 Score=39.83 Aligned_cols=35 Identities=9% Similarity=-0.038 Sum_probs=31.3
Q ss_pred EEEEeCCCccHHHHHHHHHHcCCcEEEEEECCCCC
Q 006786 98 FVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA 132 (631)
Q Consensus 98 i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~~~ 132 (631)
+.+++||+|+..+|.+-+++.|.+|||..++....
T Consensus 149 ~~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~~ 183 (374)
T COG5540 149 DRCNRRGNETEEDPTRERRRTRFKGVIRGSERNGE 183 (374)
T ss_pred HHHHHccCccccCccccchhccccceeeccccCCc
Confidence 56789999999999999999999999999987543
No 90
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=42.16 E-value=40 Score=34.44 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHcCCcEEEEEECCCCCc------eecCCCCCccccccccCcccccEEEEcHHHH-HHHHHHHcCCCeEE
Q 006786 107 FFALKVWNAQKAGASAVLVADDIEEAL------ITMDTPEEDISSAKYIENITIPSALIDKSFG-ETLKKALSGGEMVN 178 (631)
Q Consensus 107 ~F~~Kv~~Aq~aGA~avIi~n~~~~~~------~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G-~~l~~~l~~~~~v~ 178 (631)
+-+++++-|++|||.+|++.+..+.++ ..|.++++ -..--+.++||++.+-|.+- ...+...+.|..+.
T Consensus 16 ~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~---I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiI 91 (283)
T cd04727 16 TNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKM---IKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMI 91 (283)
T ss_pred CCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHH---HHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEE
Confidence 557899999999999999988765443 33433322 11112357999999988763 33333344554333
No 91
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=39.83 E-value=32 Score=27.92 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHhhhcccceEEEEeeCcEEEEccC
Q 006786 7 ITLKLFLGFLILSLNVHTSVSRFVVEKNSLMVTSPE 42 (631)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~v~~p~ 42 (631)
||||++.+|.+.+..+.++-.+- -+.++++..|.
T Consensus 3 RRlwiLslLAVtLtVALAAPsQK--sKRSVtveqPs 36 (100)
T PF05984_consen 3 RRLWILSLLAVTLTVALAAPSQK--SKRSVTVEQPS 36 (100)
T ss_pred hhhHHHHHHHHHHHHHhhccccc--cccceeecCCc
Confidence 55666655555444333222221 13445555553
No 92
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=39.24 E-value=50 Score=29.64 Aligned_cols=76 Identities=18% Similarity=0.362 Sum_probs=45.5
Q ss_pred hhhhHHHHhcccCCCCchhhhHHHHHHHHHHcCCCHhhhccccCCCCCCCCchhhHHHHHhhcCCCCCCcceecceeeec
Q 006786 304 VWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIEKCMGDPDADADNPVLKEEQDAQVGKGSRGDVTILPTLVVN 383 (631)
Q Consensus 304 ~ww~Y~~~f~~~C~~~~~~y~~~C~~~v~~~~~id~~~i~~C~~ds~~d~~n~iL~~e~~~q~~~g~~~~v~~~P~~~in 383 (631)
.+|+|....-.. . ......=-..+++.+|++.+++..|+.+.. ....++.+...-. +.+|...|++.+|
T Consensus 68 ~~~~~~~~lf~~---~-~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~gi~gtPt~~v~ 136 (154)
T cd03023 68 KYLEFHNALMAT---R-GRLNEESLLRIAKKAGLDEAKLKKDMDDPE---IEATIDKNRQLAR----ALGITGTPAFIIG 136 (154)
T ss_pred HHHHHHHHHHhc---C-CCCCHHHHHHHHHHcCCCHHHHHHHhhChH---HHHHHHHHHHHHH----HcCCCcCCeEEEC
Confidence 678877655321 0 112222245677889999999999985432 2233444333222 2357889999999
Q ss_pred Ccccccc
Q 006786 384 NRQYRGK 390 (631)
Q Consensus 384 ~~~~~c~ 390 (631)
+..+.|.
T Consensus 137 g~~~~G~ 143 (154)
T cd03023 137 DTVIPGA 143 (154)
T ss_pred CEEecCC
Confidence 8766554
No 93
>PHA02887 EGF-like protein; Provisional
Probab=38.00 E-value=30 Score=30.18 Aligned_cols=37 Identities=19% Similarity=0.495 Sum_probs=25.2
Q ss_pred CccccCC--CCCCCCCCeeeeCC--CceEEeCCCCccccCCCCcccc
Q 006786 521 IDECKER--KACQCSECSCKDTW--GSYECTCSGDLLYIRDHDTCIS 563 (631)
Q Consensus 521 ideC~~~--~~C~~~~~~C~n~~--Gsy~C~C~~G~~~~~~g~~C~~ 563 (631)
+++|.+. +.|- +++|.-.. ....|.|+.||. |..|..
T Consensus 83 f~pC~~eyk~YCi--HG~C~yI~dL~epsCrC~~GYt----G~RCE~ 123 (126)
T PHA02887 83 FEKCKNDFNDFCI--NGECMNIIDLDEKFCICNKGYT----GIRCDE 123 (126)
T ss_pred ccccChHhhCEee--CCEEEccccCCCceeECCCCcc----cCCCCc
Confidence 4556554 4565 57887544 678999999997 555653
No 94
>KOG3512 consensus Netrin, axonal chemotropic factor [Signal transduction mechanisms]
Probab=37.84 E-value=64 Score=35.08 Aligned_cols=15 Identities=33% Similarity=0.926 Sum_probs=11.3
Q ss_pred CCeee-CCCCcccCCc
Q 006786 501 NGKCQ-CPPGFKGDGV 515 (631)
Q Consensus 501 ~~~C~-C~~Gf~g~~~ 515 (631)
+-+|. |..||..++.
T Consensus 370 GrhChyCreGyyRd~s 385 (592)
T KOG3512|consen 370 GRHCHYCREGYYRDGS 385 (592)
T ss_pred CcccccccCccccCCC
Confidence 66775 9999986653
No 95
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=36.79 E-value=84 Score=24.45 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=33.5
Q ss_pred cEEEEeCCCccHHHHHHHHHHcCCcEEEEEECCCCCc-eecCCCCCccccccccCcccccEEEEcHH
Q 006786 97 NFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEAL-ITMDTPEEDISSAKYIENITIPSALIDKS 162 (631)
Q Consensus 97 ~i~Lv~RG~C~F~~Kv~~Aq~aGA~avIi~n~~~~~~-~~m~~~~~~~~~~~~~~~i~IP~~~i~~~ 162 (631)
+|.|..+-+|+|-.|++.+-+.-......+|-..+.. ..+ .......++|+++|...
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~---------~~~~g~~~vP~ifi~g~ 59 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSL---------RAVTGAMTVPQVFIDGE 59 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHH---------HHHhCCCCcCeEEECCE
Confidence 5889999999999999987754333333444322111 000 00012358899998753
No 96
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=35.16 E-value=33 Score=35.58 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=17.4
Q ss_pred HHHHHHHhhheeeeehhHHHHHhHHH
Q 006786 581 IGLAMAGGGAYLVYKYRLRSYMDSEI 606 (631)
Q Consensus 581 ~~~~~~~~~~~~~~~~r~r~~~~~~~ 606 (631)
+.++++.++.|++++||+++-|++..
T Consensus 266 liIVLIMvIIYLILRYRRKKKmkKKl 291 (299)
T PF02009_consen 266 LIIVLIMVIIYLILRYRRKKKMKKKL 291 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33444557888999999667776543
No 97
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=33.97 E-value=32 Score=41.53 Aligned_cols=41 Identities=27% Similarity=0.779 Sum_probs=33.3
Q ss_pred CcccCccccCCCCCCCCCCeeeeCCCceEEeCC-CCccccCCCCcccc
Q 006786 517 SCVDIDECKERKACQCSECSCKDTWGSYECTCS-GDLLYIRDHDTCIS 563 (631)
Q Consensus 517 ~C~dideC~~~~~C~~~~~~C~n~~Gsy~C~C~-~G~~~~~~g~~C~~ 563 (631)
.|.-+|.|.++ +|+ .++.|...+..|.|.|. .||. |.+|..
T Consensus 541 ~C~i~drClPN-~Ce-hgG~C~Qs~~~f~C~C~~TGY~----GatCHt 582 (1306)
T KOG3516|consen 541 MCGISDRCLPN-PCE-HGGKCSQSWDDFECNCELTGYK----GATCHT 582 (1306)
T ss_pred ccccccccCCc-ccc-CCCcccccccceeEeccccccc----cccccC
Confidence 36677888888 999 89999999999999999 6887 445544
No 98
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=33.26 E-value=34 Score=34.96 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHcCCcEEEEEECCCCC------ceecCCCCCccccccccCcccccEEEEcHHH
Q 006786 107 FFALKVWNAQKAGASAVLVADDIEEA------LITMDTPEEDISSAKYIENITIPSALIDKSF 163 (631)
Q Consensus 107 ~F~~Kv~~Aq~aGA~avIi~n~~~~~------~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~ 163 (631)
+-.++++-|++|||.||+.....+.+ ...|.++.+ -..--..++||++.+-|..
T Consensus 18 ~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~---I~~I~~~V~iPVig~~kig 77 (287)
T TIGR00343 18 VNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKM---IKEIMDAVSIPVMAKVRIG 77 (287)
T ss_pred CCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHH---HHHHHHhCCCCEEEEeecc
Confidence 45789999999999999997766543 345543332 1111235799999987765
No 99
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.07 E-value=33 Score=26.41 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhheeeeehhHHHHHhHHHHHHHHhhcCCCCCCCC
Q 006786 576 VWVILIGLAMAGGGAYLVYKYRLRSYMDSEIRAIMAQYMPLDSQSEV 622 (631)
Q Consensus 576 ~~~i~~~~~~~~~~~~~~~~~r~r~~~~~~~~~i~~q~~~~~~~~~~ 622 (631)
+++++..+++...+.+.+|+++.|.-++.+-+.+ +||+++..+
T Consensus 12 a~~t~~~~l~fiavi~~ayr~~~K~~~d~aa~~~----l~l~Dd~q~ 54 (60)
T COG4736 12 AWGTIAFTLFFIAVIYFAYRPGKKGEFDEAARGI----LPLNDDAQD 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHhccC----CCCCcchhh
Confidence 3443333333334445566666555556554444 666655543
No 100
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=32.22 E-value=63 Score=41.44 Aligned_cols=55 Identities=27% Similarity=0.548 Sum_probs=30.6
Q ss_pred eeeCC-CCee-eCCCCcccCCccCcccCccccCCCCCCCCCCeeeeCC--CceEEe-CCCCccc
Q 006786 496 CLDSE-NGKC-QCPPGFKGDGVKSCVDIDECKERKACQCSECSCKDTW--GSYECT-CSGDLLY 554 (631)
Q Consensus 496 C~~~~-~~~C-~C~~Gf~g~~~~~C~dideC~~~~~C~~~~~~C~n~~--Gsy~C~-C~~G~~~ 554 (631)
|.... +-.| +|.+||.|.+..+ ..-| |..- +|. .+..|..+. ....|+ |++||++
T Consensus 749 C~~~t~G~~C~~C~~GfYg~~~~~-~~~d-C~~C-~Cp-~~~~~~~~~~~~~~iCk~Cp~gytG 808 (1705)
T KOG1836|consen 749 CKHNTFGGQCAQCVDGFYGLPDLG-TSGD-CQPC-PCP-NGGACGQTPEILEVVCKNCPPGYTG 808 (1705)
T ss_pred cccCCCCCchhhhcCCCCCccccC-CCCC-CccC-CCC-CChhhcCcCcccceecCCCCCCCcc
Confidence 44333 5566 4899998766210 1111 5433 344 445555443 667788 8888763
No 101
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=32.22 E-value=34 Score=36.08 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=18.5
Q ss_pred HHHHHHhhheeeeehhHHHHHhHHHH
Q 006786 582 GLAMAGGGAYLVYKYRLRSYMDSEIR 607 (631)
Q Consensus 582 ~~~~~~~~~~~~~~~r~r~~~~~~~~ 607 (631)
.++++.++.|++.+||+++-|++..+
T Consensus 321 vIVLIMvIIYLILRYRRKKKMkKKLQ 346 (353)
T TIGR01477 321 IIVLIMVIIYLILRYRRKKKMKKKLQ 346 (353)
T ss_pred HHHHHHHHHHHHHHhhhcchhHHHHH
Confidence 34444488899999997777776643
No 102
>PTZ00046 rifin; Provisional
Probab=30.95 E-value=36 Score=36.00 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=18.0
Q ss_pred HHHHHhhheeeeehhHHHHHhHHHH
Q 006786 583 LAMAGGGAYLVYKYRLRSYMDSEIR 607 (631)
Q Consensus 583 ~~~~~~~~~~~~~~r~r~~~~~~~~ 607 (631)
++++.++.|++.+||+++-|++..+
T Consensus 327 IVLIMvIIYLILRYRRKKKMkKKLQ 351 (358)
T PTZ00046 327 IVLIMVIIYLILRYRRKKKMKKKLQ 351 (358)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHH
Confidence 4444488899999997777776543
No 103
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=28.39 E-value=3e+02 Score=29.33 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=49.5
Q ss_pred CcEEEEeCCCccHHHHH--HHHHHcCCcEEEEEECCCCCceecCCCCCccccccccCcccccEEEEcHHHHHHHHHHHcC
Q 006786 96 PNFVLVDRGDCFFALKV--WNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSG 173 (631)
Q Consensus 96 ~~i~Lv~RG~C~F~~Kv--~~Aq~aGA~avIi~n~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~~G~~l~~~l~~ 173 (631)
|++++.+|-.=-...|. ..|.++||.|+|+-.+.+..+++-+.-.- ........||++.+...++..++.+
T Consensus 90 Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~~Gd~gy----~~~s~PtPIPva~v~en~~~y~~~~--- 162 (486)
T COG4882 90 GRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIVTGGDWGY----SVSSSPTPIPVAVVPENYSRYAEEA--- 162 (486)
T ss_pred CeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCceeEEecccccc----cCCCCCCCcceEEeccCcchhhccc---
Confidence 77888777554444443 46889999999998766544444321110 0111345899999999988876532
Q ss_pred CCeEEEEEEe
Q 006786 174 GEMVNVNLDW 183 (631)
Q Consensus 174 ~~~v~v~l~~ 183 (631)
..|.+.++.
T Consensus 163 -~rvrl~vD~ 171 (486)
T COG4882 163 -GRVRLWVDA 171 (486)
T ss_pred -eeEEEEEec
Confidence 245555554
No 104
>PRK01844 hypothetical protein; Provisional
Probab=28.05 E-value=72 Score=25.46 Aligned_cols=24 Identities=13% Similarity=0.393 Sum_probs=11.6
Q ss_pred hheeeeehhHHHHHh-------HHHHHHHHh
Q 006786 589 GAYLVYKYRLRSYMD-------SEIRAIMAQ 612 (631)
Q Consensus 589 ~~~~~~~~r~r~~~~-------~~~~~i~~q 612 (631)
++|.+-++-.++|++ +-+|..+.|
T Consensus 20 ~Gff~ark~~~k~lk~NPpine~mir~Mm~Q 50 (72)
T PRK01844 20 LGFFIARKYMMNYLQKNPPINEQMLKMMMMQ 50 (72)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 333333333466764 335665555
No 105
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=27.69 E-value=73 Score=38.47 Aligned_cols=72 Identities=31% Similarity=0.615 Sum_probs=51.5
Q ss_pred ccccccCCCCCCCCCCCCccccccCCCceeeeecCCCCeeEeCCCcceecccCCCccccCCCCCCCCCCCCCccceee-e
Q 006786 420 TNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACL-D 498 (631)
Q Consensus 420 ~deC~~~~~~C~~~~~~~~~~C~n~~gs~~C~C~~~~G~~~~~dg~~~C~~~~~~~C~~~~~~C~~~~~~~~~~~~C~-~ 498 (631)
+++|......|. +.|.+......|.|.. ++.+...+ ... . +.|...++.|.+. |. +
T Consensus 325 ~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~--~~~~~~~~-~~~--~--~~~~~~~g~Csq~---------C~~~ 381 (877)
T KOG1215|consen 325 LNECAERVLKCS-------HKCPDVSVGPRCDCMG--AKVLPLGA-RTD--S--NPCESDNGGCSQL---------CVPN 381 (877)
T ss_pred cccchhhccccc-------CCCCccccCCcccCCc--cceecccc-ccc--C--CcccccCCcccee---------ccCC
Confidence 556665555565 6788888888999998 66665555 221 1 5677778889877 77 4
Q ss_pred CC-CCeeeCCCCcccCC
Q 006786 499 SE-NGKCQCPPGFKGDG 514 (631)
Q Consensus 499 ~~-~~~C~C~~Gf~g~~ 514 (631)
.+ .+.|.|..||....
T Consensus 382 ~p~~~~c~c~~g~~~~~ 398 (877)
T KOG1215|consen 382 SPGTFKCACSPGYELRL 398 (877)
T ss_pred CCCceeEecCCCcEecc
Confidence 45 99999999998543
No 106
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=27.64 E-value=40 Score=25.00 Aligned_cols=24 Identities=38% Similarity=0.923 Sum_probs=16.6
Q ss_pred CCeeeCCCCcccCCccCcccCccc
Q 006786 501 NGKCQCPPGFKGDGVKSCVDIDEC 524 (631)
Q Consensus 501 ~~~C~C~~Gf~g~~~~~C~dideC 524 (631)
...|.|++||..+....|+...+|
T Consensus 32 ~~gC~C~~G~v~~~~~~CV~~~~C 55 (55)
T PF01826_consen 32 VEGCFCPPGYVRNDNGRCVPPSEC 55 (55)
T ss_dssp ESEEEETTTEEEETTSEEEEGGGC
T ss_pred CccCCCCCCeeEcCCCCEEcHHHC
Confidence 345999999986554347766655
No 107
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=27.13 E-value=12 Score=34.38 Aligned_cols=14 Identities=14% Similarity=0.484 Sum_probs=6.3
Q ss_pred eeeehhHHHHHhHH
Q 006786 592 LVYKYRLRSYMDSE 605 (631)
Q Consensus 592 ~~~~~r~r~~~~~~ 605 (631)
..++.|+..||+++
T Consensus 73 ~c~r~kktdfidSd 86 (154)
T PF04478_consen 73 FCIRRKKTDFIDSD 86 (154)
T ss_pred EEEecccCccccCC
Confidence 33344434566533
No 108
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=27.12 E-value=1.4e+02 Score=24.70 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=39.1
Q ss_pred CcEEEEeCC-----CccHHHHHHHHH-HcCCcEEEEEECCCCCceecCCCCCccccccccCcccccEEEEcHH---HHHH
Q 006786 96 PNFVLVDRG-----DCFFALKVWNAQ-KAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKS---FGET 166 (631)
Q Consensus 96 ~~i~Lv~RG-----~C~F~~Kv~~Aq-~aGA~avIi~n~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~i~~~---~G~~ 166 (631)
.+|+|...| .|.|-.|++..- +.|+. ...+|-..++-+... -......-++|.++|... ..+.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~-y~~idv~~~~~~~~~-------l~~~~g~~tvP~vfi~g~~iGG~~~ 79 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD-FGTFDILEDEEVRQG-------LKEYSNWPTFPQLYVNGELVGGCDI 79 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC-eEEEEcCCCHHHHHH-------HHHHhCCCCCCEEEECCEEEeCHHH
Confidence 467777766 899999988665 45644 333442211100000 000112348999999865 4456
Q ss_pred HHHHHcCC
Q 006786 167 LKKALSGG 174 (631)
Q Consensus 167 l~~~l~~~ 174 (631)
|+++.++|
T Consensus 80 l~~l~~~g 87 (90)
T cd03028 80 VKEMHESG 87 (90)
T ss_pred HHHHHHcC
Confidence 66655555
No 109
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=26.95 E-value=20 Score=33.82 Aligned_cols=63 Identities=22% Similarity=0.299 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEECCC------CCceecCCCCCccccccccCcccccEEE---EcHHHHHHHHHHHc
Q 006786 107 FFALKVWNAQKAGASAVLVADDIE------EALITMDTPEEDISSAKYIENITIPSAL---IDKSFGETLKKALS 172 (631)
Q Consensus 107 ~F~~Kv~~Aq~aGA~avIi~n~~~------~~~~~m~~~~~~~~~~~~~~~i~IP~~~---i~~~~G~~l~~~l~ 172 (631)
+-.++++-|++|||.||+.....+ +....|..|.- -.+--+.++||++. |.+-.=.+|+++|.
T Consensus 22 ~n~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~---I~eI~~aVsIPVMAK~RIGHfvEAqiLealg 93 (208)
T PF01680_consen 22 TNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKM---IKEIMDAVSIPVMAKVRIGHFVEAQILEALG 93 (208)
T ss_dssp SSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHH---HHHHHHH-SSEEEEEEETT-HHHHHHHHHTT
T ss_pred cCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHH---HHHHHHheEeceeeccccceeehhhhHHHhC
Confidence 457899999999999999987654 23345532210 01112346899854 55555556666664
No 110
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=22.84 E-value=80 Score=27.21 Aligned_cols=31 Identities=32% Similarity=0.845 Sum_probs=20.4
Q ss_pred CccccCCCCCCCCCCCCCccceeeeCCCCeeeCCCCccc
Q 006786 474 GKCKINNGGCWHESKDGHTYSACLDSENGKCQCPPGFKG 512 (631)
Q Consensus 474 ~~C~~~~~~C~~~~~~~~~~~~C~~~~~~~C~C~~Gf~g 512 (631)
+.|... +.|... +.|.......|.|.+||+.
T Consensus 78 d~Cd~y-~~CG~~-------g~C~~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 78 DQCDVY-GFCGPN-------GICNSNNSPKCSCLPGFEP 108 (110)
T ss_pred cCCCCc-cccCCc-------cEeCCCCCCceECCCCcCC
Confidence 455432 356554 8895433667999999975
No 111
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=20.78 E-value=88 Score=36.64 Aligned_cols=49 Identities=24% Similarity=0.663 Sum_probs=0.0
Q ss_pred eeeCCCCccc--CCccCcc----cCccccCC-CCCC-CCCCeeeeCCCceEEeCCCCc
Q 006786 503 KCQCPPGFKG--DGVKSCV----DIDECKER-KACQ-CSECSCKDTWGSYECTCSGDL 552 (631)
Q Consensus 503 ~C~C~~Gf~g--~~~~~C~----dideC~~~-~~C~-~~~~~C~n~~Gsy~C~C~~G~ 552 (631)
.|.|.+||+. .+.. |+ ..-.-... ..|. |+.+.=...+|+-.|.|..||
T Consensus 260 ~C~C~aGye~~~~~~~-C~aCp~G~yK~~~~~~~C~~CP~~S~s~~ega~~C~C~~gy 316 (996)
T KOG0196|consen 260 GCVCKAGYEEAENGKA-CQACPPGTYKASQGDSLCLPCPPNSHSSSEGATSCTCENGY 316 (996)
T ss_pred ceeecCCCCcccCCCc-ceeCCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccccCCc
No 112
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=20.26 E-value=54 Score=32.39 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHcCCcEEEEEECCCCC------ceecCCCCCccccccccCcccccEEE---EcHHHHHHHHHHHc
Q 006786 106 CFFALKVWNAQKAGASAVLVADDIEEA------LITMDTPEEDISSAKYIENITIPSAL---IDKSFGETLKKALS 172 (631)
Q Consensus 106 C~F~~Kv~~Aq~aGA~avIi~n~~~~~------~~~m~~~~~~~~~~~~~~~i~IP~~~---i~~~~G~~l~~~l~ 172 (631)
-+-.++++-|+.|||.||......+.+ ...|..+.- -.+--..++||+.. |.+-.-..++++|.
T Consensus 27 V~n~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRMaDp~~---i~eim~aVsIPVMAKvRIGH~~EA~iLealg 99 (296)
T COG0214 27 VVNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKM---IEEIMDAVSIPVMAKVRIGHFVEAQILEALG 99 (296)
T ss_pred ecCHHHHHHHHhcCceeEeehhhCcHHHHhccCccccCCHHH---HHHHHHhcccceeeeeecchhHHHHHHHHhC
Confidence 355789999999999999988776533 345543211 11112357899853 55544455666664
No 113
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=20.11 E-value=64 Score=38.66 Aligned_cols=36 Identities=31% Similarity=0.878 Sum_probs=30.4
Q ss_pred cccCCCCCCCCCCeeeeCCCceEEeCCC-CccccCCCCccccC
Q 006786 523 ECKERKACQCSECSCKDTWGSYECTCSG-DLLYIRDHDTCISK 564 (631)
Q Consensus 523 eC~~~~~C~~~~~~C~n~~Gsy~C~C~~-G~~~~~~g~~C~~~ 564 (631)
.|..+ ||. ++++|...+..|.|.|.. ||. |.+|...
T Consensus 625 ~C~~n-PC~-N~g~C~egwNrfiCDCs~T~~~----G~~CerE 661 (1591)
T KOG3514|consen 625 ICESN-PCQ-NGGKCSEGWNRFICDCSGTGFE----GRTCERE 661 (1591)
T ss_pred ccCCC-ccc-CCCCccccccccccccccCccc----Cccccce
Confidence 48777 999 999999999999999987 654 7788764
Done!