BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006787
(631 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 477 GPARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRGDGHKCEDINECKERSACQC 536
G C++NNGGC + C+ CH DG C+D+NEC E C
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCT------CHTGYRLTEDGRTCQDVNECAEEGYCS- 54
Query: 537 DGCSCQNTWGGFECKCKGNLLFIKEQDAC 565
C N+ G F+C C+ ++ +C
Sbjct: 55 --QGCTNSEGAFQCWCEAGYELRPDRRSC 81
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 474 QAYGPARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRG-DGHKC 522
Q G RC NNGGC T Q C CP GFR + H C
Sbjct: 343 QPAGKNRCGDNNGGC--------THLCLPSGQNYTCACPTGFRKINSHAC 384
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 477 GPARCSINNGGCWSDTKNGLTFSACSESQI-TGCHCPKGFRGDGHK-CEDINECKERSAC 534
G C NNGGC C++ +I C CP GF+ + CEDI+EC++ C
Sbjct: 39 GTNECLDNNGGC---------SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC 89
Query: 535 QCDGCSCQNTWGGFECKCKGNLLFIKEQDACIERNGSRFGWFFT 578
C N GG++C+C+ AC + GS FFT
Sbjct: 90 S---QLCVNLEGGYKCQCEEGFQLDPHTKAC-KAVGSIAYLFFT 129
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 481 CSINNGGCWSDTKNGLTFSACSESQI-TGCHCPKGFRGDGHK-CEDINECKERSACQCDG 538
C NNGGC C++ +I C CP GF+ + CEDI+EC++ C
Sbjct: 3 CLDNNGGC---------SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC---S 50
Query: 539 CSCQNTWGGFECKCKGNLLFIKEQDACIERNGSRFGWFFT 578
C N GG++C+C+ AC + GS FFT
Sbjct: 51 QLCVNLEGGYKCQCEEGFQLDPHTKAC-KAVGSIAYLFFT 89
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 477 GPARCSINNGGCWSDTKNGLTFSACSESQIT-GCHCPKGFRGDGHK-CEDINECKERSAC 534
G C NNGGC C++ +I C CP GF+ + CEDI+EC++ C
Sbjct: 311 GTNECLDNNGGC---------SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC 361
Query: 535 QCDGCSCQNTWGGFECKCKGNLLFIKEQDACIERNGSRFGWFFT 578
C N GG++C+C+ AC + GS FFT
Sbjct: 362 S---QLCVNLEGGYKCQCEEGFQLDPHTKAC-KAVGSIAYLFFT 401
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 477 GPARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRGDGHK-CEDINECKERSACQ 535
G C NNGGC S N L C CP GF+ + CEDI+EC++ C
Sbjct: 293 GTNECLDNNGGC-SHVCNDLKIGY-------ECLCPDGFQLVAQRRCEDIDECQDPDTCS 344
Query: 536 CDGCSCQNTWGGFECKCKGNLLFIKEQDACIERNGSRFGWFFT 578
C N GG++C+C+ AC + GS FFT
Sbjct: 345 ---QLCVNLEGGYKCQCEEGFQLDPHTKAC-KAVGSIAYLFFT 383
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 25/112 (22%)
Query: 458 PIVKGVQYRGDGYISCQAYGPARCSINNGGCWSDTKNGLTFSACSESQIT-GCHCPKGFR 516
P + + ++G A G C NNGGC C++ +I C CP GF+
Sbjct: 16 PTTENLYFQG-------AMGTNECLDNNGGCSH---------VCNDLKIGYECLCPDGFQ 59
Query: 517 GDGHK-CEDINECKERSACQCDGCS--CQNTWGGFECKCKGNLLFIKEQDAC 565
+ CEDI+EC++ D CS C N GG++C+C+ AC
Sbjct: 60 LVAQRRCEDIDECQDP-----DTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 25/112 (22%)
Query: 458 PIVKGVQYRGDGYISCQAYGPARCSINNGGCWSDTKNGLTFSACSESQIT-GCHCPKGFR 516
P + + ++G A G C NNGGC C++ +I C CP GF+
Sbjct: 16 PTTENLYFQG-------AMGTNECLDNNGGCSY---------VCNDLKIGYECLCPDGFQ 59
Query: 517 GDGHK-CEDINECKERSACQCDGCS--CQNTWGGFECKCKGNLLFIKEQDAC 565
+ CEDI+EC++ D CS C N GG++C+C+ AC
Sbjct: 60 LVAQRRCEDIDECQDP-----DTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 509 CHCPKGFRGD--GHKCEDINECKERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQD 563
C CP+G+R + CEDI+EC E Q C N GG+ C C G F QD
Sbjct: 27 CECPEGYRYNLKSKSCEDIDECSENMCAQ----LCVNYPGGYTCYCDGKKGFKLAQD 79
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 475 AYGPARCSINNGGCWSDTKNGLTFSACSESQIT-GCHCPKGFRGDGHK-CEDINECKERS 532
A G C NNGGC C++ +I C CP GF+ + CEDI+EC++
Sbjct: 2 AMGTNECLDNNGGCSH---------VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDP- 51
Query: 533 ACQCDGCS--CQNTWGGFECKCKGNLLFIKEQDAC 565
D CS C N GG++C+C+ AC
Sbjct: 52 ----DTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 22/97 (22%)
Query: 475 AYGPARCSINNGGC---WSDTKNGLTFSACSESQITGCHCPKGFRGDGHK-CEDINECKE 530
A G C NNGGC +D K G C CP GF+ + CEDI+EC++
Sbjct: 2 AMGTNECLDNNGGCSYVCNDLKIGYE-----------CLCPDGFQLVAQRRCEDIDECQD 50
Query: 531 RSACQCDGCS--CQNTWGGFECKCKGNLLFIKEQDAC 565
D CS C N GG++C+C+ AC
Sbjct: 51 P-----DTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 509 CHCPKGFRGDGHKCEDINECKERSACQCDGCSCQNTWGGFECKCK 553
C CP G+ G++C D +EC + C +G +C+N GGFEC C+
Sbjct: 28 CECPFGYILAGNECVDTDECSVGNPCG-NG-TCKNVIGGFECTCE 70
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 480 RCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRGDGHK-CEDINECKERSACQCDG 538
C NNGGC S N L C CP GF+ + CEDI+EC++ D
Sbjct: 4 ECLDNNGGC-SHVCNDLKIG-------YECLCPDGFQLVAQRRCEDIDECQDP-----DT 50
Query: 539 CS--CQNTWGGFECKCKGNLLFIKEQDAC 565
CS C N GG++C+C+ AC
Sbjct: 51 CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 79
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 480 RCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRGDGHK-CEDINECKERSACQCDG 538
C NNGGC S N L C CP GF+ + CEDI+EC++ D
Sbjct: 4 ECLDNNGGC-SHVCNDLKIGY-------ECLCPDGFQLVAQRRCEDIDECQDP-----DT 50
Query: 539 CS--CQNTWGGFECKCKGNLLFIKEQDAC 565
CS C N GG++C+C+ AC
Sbjct: 51 CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 79
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 520 HKCEDINECK--ERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDACIERN 569
+ EDI+EC+ A CD C N GGF C C+ + + + C E++
Sbjct: 119 YAAEDIDECQVAPGEAPTCDH-HCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 523 EDINECKERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDAC 565
EDI+EC+E C G C NT+G F+C+C ++ C
Sbjct: 120 EDIDECQELPG-LCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 523 EDINECKERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDAC 565
EDI+EC+E C G C NT+G F+C+C ++ C
Sbjct: 120 EDIDECQELPG-LCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
Query: 478 PARCSI--NNGGCWSDTKNGLTFSACSESQITGCHCPKGF-RGDGHKCEDINECKERSAC 534
P RC + N C +D C + C CP+G+ DG C DI+EC+ C
Sbjct: 39 PHRCQMFCNQTACPAD---------CDPNTQASCECPEGYILDDGFICTDIDECENGGFC 89
Query: 535 QCDGCSCQNTWGGFECKC 552
G C N G FEC C
Sbjct: 90 S--G-VCHNLPGTFECIC 104
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
Query: 478 PARCSI--NNGGCWSDTKNGLTFSACSESQITGCHCPKGF-RGDGHKCEDINECKERSAC 534
P RC + N C +D C + C CP+G+ DG C DI+EC+ C
Sbjct: 39 PHRCQLFCNQTACPAD---------CDPNTQASCECPEGYILDDGFICTDIDECENGGFC 89
Query: 535 QCDGCSCQNTWGGFECKC 552
G C N G FEC C
Sbjct: 90 S--G-VCHNLPGTFECIC 104
>pdb|1AE9|A Chain A, Structure Of The Lambda Integrase Catalytic Core
pdb|1AE9|B Chain B, Structure Of The Lambda Integrase Catalytic Core
Length = 179
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 156 KIGIPSALIDRAFGLSLKEALKKGEEVV 183
KI IP+AL A G+S+KE L K +E++
Sbjct: 63 KIAIPTALHIDALGISMKETLDKCKEIL 90
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 511 CPKGFRGDGHKCEDINECKERSACQCDGC-------SCQNTWGGFEC 550
CP GF G+G CED++EC A D C C NT GF C
Sbjct: 27 CPVGFLGNGTHCEDLDEC----ALVPDICFSTSKVPRCVNTQPGFHC 69
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 511 CPKGFRGDGHKCEDINECKERSACQCDGC-------SCQNTWGGFEC 550
CP GF G+G CED++EC A D C C NT GF C
Sbjct: 30 CPVGFLGNGTHCEDLDEC----ALVPDICFSTSKVPRCVNTQPGFHC 72
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 474 QAYGPARCSINNGGCWSDTKNGLTFSACSESQITGCH----CPKGF-RGDGHKCEDINEC 528
Q RC IN G ++ + A S T C C KG+ R G +CEDI+EC
Sbjct: 51 QTVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDEC 110
Query: 529 KERSACQCDGCSCQNTWGGFECKCKGNLLF 558
+ C C NT G F+C+C +
Sbjct: 111 EVFPG-VCKNGLCVNTRGSFKCQCPSGMTL 139
>pdb|1Z1B|A Chain A, Crystal Structure Of A Lambda Integrase Dimer Bound To A
Coc' Core Site
pdb|1Z1B|B Chain B, Crystal Structure Of A Lambda Integrase Dimer Bound To A
Coc' Core Site
Length = 356
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 156 KIGIPSALIDRAFGLSLKEALKKGEEVV 183
KI IP+AL A G+S+KE L K +E++
Sbjct: 239 KIAIPTALHIDALGISMKETLDKCKEIL 266
>pdb|3DPN|A Chain A, Crystal Structure Of Cpaf S499a Mutant
pdb|3DPN|B Chain B, Crystal Structure Of Cpaf S499a Mutant
Length = 583
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 161 SALIDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQM- 219
S L DR L + +EVV LDW + + D VE L N E G D Q+
Sbjct: 354 SMLTDRPLELPKHRMILTQDEVVDALDWLTLLENVDTNVESRLALGDNME-GYTVDLQVA 412
Query: 220 NFVKNF 225
++K+F
Sbjct: 413 EYLKSF 418
>pdb|3DOR|A Chain A, Crystal Structure Of Mature Cpaf
pdb|3DOR|B Chain B, Crystal Structure Of Mature Cpaf
pdb|3DPM|A Chain A, Structure Of Mature Cpaf Complexed With Lactacystin
pdb|3DPM|B Chain B, Structure Of Mature Cpaf Complexed With Lactacystin
Length = 583
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 161 SALIDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQM- 219
S L DR L + +EVV LDW + + D VE L N E G D Q+
Sbjct: 354 SMLTDRPLELPKHRMILTQDEVVDALDWLTLLENVDTNVESRLALGDNME-GYTVDLQVA 412
Query: 220 NFVKNF 225
++K+F
Sbjct: 413 EYLKSF 418
>pdb|1P7D|A Chain A, Crystal Structure Of The Lambda Integrase (Residues
75-356) Bound To Dna
pdb|1P7D|B Chain B, Crystal Structure Of The Lambda Integrase (Residues
75-356) Bound To Dna
Length = 283
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 148 TDANGYVE------KIGIPSALIDRAFGLSLKEALKKGEEVV 183
D YVE KI IP+AL A G+S+KE L K +E++
Sbjct: 152 VDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEIL 193
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 524 DINECKERS--ACQCDGCSCQNTWGGFECKCKGNLLFIKEQDAC 565
D++ECKER CD C N GG+ C C+ + + C
Sbjct: 120 DVDECKEREDEELSCDH-YCHNYIGGYYCSCRFGYILHTDNRTC 162
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 502 SESQITGCHCPKGFR---GDGHKCEDINECKERSACQCDGCSCQNTWGGFECKCKGNLLF 558
SE Q GC C G D KC E + C D C+N G ++C+C F
Sbjct: 111 SEIQSAGCSCAIGKVPNPEDEKKCTKTGETACQLKCNTDNEVCKNVEGVYKCQCMEGFTF 170
Query: 559 IKEQDACI 566
KE++ C+
Sbjct: 171 DKEKNVCL 178
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 32/135 (23%)
Query: 432 NGGCWQDTQANITACKDTFRGRLCE--CPIV---KGVQYRGDGYISCQAYGPARCSINNG 486
NG C +DT I C F GR CE C + + + R G C++Y C +
Sbjct: 208 NGVCHEDTGECI--CPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSY--VFCLPDPY 263
Query: 487 GCWSDTKNGLTFSACSESQITGCHCPKGFRGDGHKCEDINECKERSAC----QCD---GC 539
GC T G C+E+ C GF G +CK R +C CD GC
Sbjct: 264 GCSCAT--GWKGLQCNEA------CHPGFYGP--------DCKLRCSCNNGEMCDRFQGC 307
Query: 540 SCQNTWGGFECKCKG 554
C W G +C+ +G
Sbjct: 308 LCSPGWQGLQCEREG 322
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 474 QAYGPARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRG-DGHKC 522
Q G RC NNGGC T Q C CP GFR + H C
Sbjct: 300 QPAGKNRCGDNNGGC--------THLCLPSGQNYTCACPTGFRKINSHAC 341
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 524 DINECKERS--ACQCDGCSCQNTWGGFECKCKGNLLFIKEQDAC 565
D++ECKER CD C N GG+ C C+ + + C
Sbjct: 120 DVDECKEREDEELSCDH-YCHNYIGGYYCSCRFGYILHTDNRTC 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,903,690
Number of Sequences: 62578
Number of extensions: 820762
Number of successful extensions: 1714
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 96
length of query: 631
length of database: 14,973,337
effective HSP length: 105
effective length of query: 526
effective length of database: 8,402,647
effective search space: 4419792322
effective search space used: 4419792322
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)