Query 006787
Match_columns 631
No_of_seqs 613 out of 3429
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 14:29:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02125 PA_VSR PA_VSR: Proteas 99.9 2.9E-26 6.3E-31 207.3 14.8 125 61-186 1-127 (127)
2 KOG1214 Nidogen and related ba 99.9 2.2E-22 4.8E-27 218.1 7.6 300 222-568 533-866 (1289)
3 cd02126 PA_EDEM3_like PA_EDEM3 99.9 3.1E-21 6.7E-26 175.0 13.3 118 57-186 2-126 (126)
4 cd02123 PA_C_RZF_like PA_C-RZF 99.9 6.7E-21 1.5E-25 178.4 15.9 122 52-181 21-142 (153)
5 cd02127 PA_hPAP21_like PA_hPAP 99.9 4.4E-21 9.5E-26 171.3 13.9 114 61-187 1-117 (118)
6 cd02122 PA_GRAIL_like PA _GRAI 99.9 6.3E-21 1.4E-25 174.9 14.2 118 57-186 17-138 (138)
7 cd02132 PA_GO-like PA_GO-like: 99.8 4.2E-20 9E-25 170.5 14.7 122 51-186 15-139 (139)
8 cd04813 PA_1 PA_1: Protease-as 99.8 1.4E-18 3.1E-23 154.8 11.0 105 58-178 6-111 (117)
9 cd02129 PA_hSPPL_like PA_hSPPL 99.8 4.9E-18 1.1E-22 150.8 11.9 91 79-182 27-118 (120)
10 cd04816 PA_SaNapH_like PA_SaNa 99.7 2.5E-17 5.3E-22 149.0 14.1 114 61-186 7-122 (122)
11 KOG3920 Uncharacterized conser 99.7 2.9E-18 6.3E-23 153.2 6.2 161 14-187 5-172 (193)
12 cd02130 PA_ScAPY_like PA_ScAPY 99.7 7.9E-17 1.7E-21 145.7 13.3 109 62-186 14-122 (122)
13 cd04818 PA_subtilisin_1 PA_sub 99.7 1.3E-16 2.8E-21 143.5 13.6 113 59-186 2-118 (118)
14 cd02124 PA_PoS1_like PA_PoS1_l 99.6 2E-15 4.4E-20 137.1 13.0 91 79-186 38-129 (129)
15 KOG4628 Predicted E3 ubiquitin 99.6 1.5E-15 3.3E-20 156.3 13.0 116 54-180 35-151 (348)
16 cd04817 PA_VapT_like PA_VapT_l 99.6 1.3E-14 2.8E-19 132.6 12.6 100 66-182 31-137 (139)
17 KOG2442 Uncharacterized conser 99.5 4.8E-13 1E-17 140.2 13.0 137 56-210 56-210 (541)
18 PF02225 PA: PA domain; Inter 99.4 9.5E-14 2.1E-18 121.0 5.9 96 68-176 3-101 (101)
19 cd00538 PA PA: Protease-associ 99.4 6.9E-13 1.5E-17 120.3 10.8 100 79-186 27-126 (126)
20 KOG1219 Uncharacterized conser 99.4 1.5E-13 3.3E-18 161.3 6.9 110 425-566 3864-3977(4289)
21 cd02133 PA_C5a_like PA_C5a_lik 99.4 1.3E-11 2.8E-16 114.8 14.4 100 60-178 15-114 (143)
22 cd04819 PA_2 PA_2: Protease-as 99.3 3.3E-11 7.2E-16 109.6 12.8 105 68-185 20-126 (127)
23 cd04815 PA_M28_2 PA_M28_2: Pro 99.2 6.4E-11 1.4E-15 108.6 8.6 109 62-186 8-134 (134)
24 cd02120 PA_subtilisin_like PA_ 99.0 2.5E-09 5.3E-14 97.2 9.6 84 81-181 36-121 (126)
25 cd02128 PA_TfR PA_TfR: Proteas 98.9 7.2E-09 1.6E-13 98.9 11.4 115 59-178 17-155 (183)
26 KOG1214 Nidogen and related ba 98.8 5.5E-09 1.2E-13 115.3 7.5 121 425-567 692-826 (1289)
27 PF07645 EGF_CA: Calcium-bindi 98.7 1.8E-08 3.8E-13 73.0 4.2 41 524-565 1-42 (42)
28 KOG4289 Cadherin EGF LAG seven 98.7 3.9E-08 8.4E-13 113.4 8.9 87 398-514 1218-1308(2531)
29 KOG4289 Cadherin EGF LAG seven 98.4 3.4E-07 7.3E-12 106.0 6.3 97 448-568 1217-1318(2531)
30 cd02121 PA_GCPII_like PA_GCPII 98.4 1.7E-06 3.8E-11 85.4 10.1 125 69-206 43-209 (220)
31 KOG1219 Uncharacterized conser 98.4 4.3E-07 9.2E-12 108.8 6.6 103 386-518 3867-3974(4289)
32 KOG4260 Uncharacterized conser 98.3 6.7E-07 1.5E-11 87.9 4.6 104 442-558 154-269 (350)
33 PF07645 EGF_CA: Calcium-bindi 98.2 1.5E-06 3.2E-11 62.9 3.9 39 424-469 1-39 (42)
34 cd04822 PA_M28_1_3 PA_M28_1_3: 98.2 1.7E-05 3.7E-10 73.8 11.8 97 69-178 18-134 (151)
35 PF06247 Plasmod_Pvs28: Plasmo 98.1 1.8E-06 4E-11 81.0 4.0 149 387-566 4-169 (197)
36 KOG4260 Uncharacterized conser 98.1 2.9E-06 6.2E-11 83.5 4.1 145 388-567 155-312 (350)
37 cd04814 PA_M28_1 PA_M28_1: Pro 98.0 1.8E-05 3.9E-10 72.9 8.2 63 69-135 18-100 (142)
38 KOG1217 Fibrillins and related 98.0 1.8E-05 4E-10 87.5 9.4 141 400-561 150-306 (487)
39 cd02131 PA_hNAALADL2_like PA_h 98.0 1.8E-05 4E-10 72.7 7.5 103 67-177 11-138 (153)
40 PF14670 FXa_inhibition: Coagu 98.0 8.6E-06 1.9E-10 56.5 3.5 31 532-565 6-36 (36)
41 cd04820 PA_M28_1_1 PA_M28_1_1: 97.9 4E-05 8.7E-10 70.1 7.7 64 68-135 19-96 (137)
42 PF14670 FXa_inhibition: Coagu 97.8 2.5E-05 5.5E-10 54.1 3.5 36 428-473 1-36 (36)
43 smart00179 EGF_CA Calcium-bind 97.6 6E-05 1.3E-09 53.1 3.7 38 524-565 1-38 (39)
44 PF12662 cEGF: Complement Clr- 97.6 3.5E-05 7.6E-10 48.1 1.9 22 506-527 1-24 (24)
45 PF12947 EGF_3: EGF domain; I 97.6 6.3E-05 1.4E-09 52.3 2.8 35 528-565 1-36 (36)
46 KOG1217 Fibrillins and related 97.5 0.00028 6E-09 78.0 9.4 138 402-567 252-399 (487)
47 PF12947 EGF_3: EGF domain; I 97.3 0.00024 5.2E-09 49.3 3.5 36 428-473 1-36 (36)
48 PF12662 cEGF: Complement Clr- 97.1 0.00025 5.4E-09 44.3 1.7 24 452-480 1-24 (24)
49 cd01475 vWA_Matrilin VWA_Matri 96.8 0.0011 2.4E-08 66.4 3.6 41 520-563 182-223 (224)
50 PF00008 EGF: EGF-like domain 96.7 0.0013 2.8E-08 44.5 2.2 29 528-558 1-30 (32)
51 cd00054 EGF_CA Calcium-binding 96.5 0.0027 5.8E-08 43.9 3.3 34 524-558 1-34 (38)
52 smart00179 EGF_CA Calcium-bind 96.3 0.004 8.7E-08 43.5 3.1 33 424-464 1-33 (39)
53 smart00181 EGF Epidermal growt 95.8 0.012 2.5E-07 40.3 3.4 30 528-559 2-31 (35)
54 cd00053 EGF Epidermal growth f 95.7 0.013 2.8E-07 39.7 3.5 27 532-559 6-32 (36)
55 PF06247 Plasmod_Pvs28: Plasmo 95.2 0.027 5.9E-07 53.4 4.6 97 444-557 11-119 (197)
56 PF00008 EGF: EGF-like domain 94.8 0.023 5E-07 38.3 2.2 23 442-468 8-31 (32)
57 cd01475 vWA_Matrilin VWA_Matri 94.2 0.038 8.3E-07 55.2 3.3 43 414-469 180-222 (224)
58 cd00054 EGF_CA Calcium-binding 94.1 0.05 1.1E-06 37.3 2.8 29 425-459 2-30 (38)
59 cd04821 PA_M28_1_2 PA_M28_1_2: 94.0 0.11 2.3E-06 49.0 5.7 42 93-134 42-102 (157)
60 KOG0994 Extracellular matrix g 93.5 0.097 2.1E-06 61.4 5.3 58 506-567 840-908 (1758)
61 PF12946 EGF_MSP1_1: MSP1 EGF 92.7 0.081 1.8E-06 36.6 2.0 31 528-560 2-33 (37)
62 KOG1225 Teneurin-1 and related 91.4 0.4 8.7E-06 53.4 6.5 66 454-557 297-362 (525)
63 cd00053 EGF Epidermal growth f 90.5 0.28 6E-06 32.9 2.8 18 442-459 10-27 (36)
64 KOG2195 Transferrin receptor a 88.5 1.9 4E-05 50.2 9.1 214 61-320 148-412 (702)
65 smart00181 EGF Epidermal growt 88.5 0.46 9.9E-06 32.2 2.7 24 433-464 6-29 (35)
66 KOG1225 Teneurin-1 and related 87.2 1.2 2.5E-05 49.9 6.2 78 444-558 260-337 (525)
67 KOG0994 Extracellular matrix g 86.6 1 2.2E-05 53.5 5.4 50 407-469 848-898 (1758)
68 PHA03099 epidermal growth fact 85.5 0.83 1.8E-05 40.7 3.2 37 524-566 41-81 (139)
69 PF12661 hEGF: Human growth fa 82.4 0.61 1.3E-05 24.8 0.7 11 508-518 1-11 (13)
70 PF12955 DUF3844: Domain of un 75.8 2.6 5.6E-05 36.6 2.8 53 526-579 6-73 (103)
71 cd03023 DsbA_Com1_like DsbA fa 68.3 8.1 0.00018 35.1 4.7 79 309-398 68-146 (154)
72 PF09064 Tme5_EGF_like: Thromb 67.2 5.3 0.00011 27.2 2.2 25 533-561 7-31 (34)
73 PF01683 EB: EB module; Inter 63.7 11 0.00024 28.1 3.8 27 528-559 22-48 (52)
74 PF00954 S_locus_glycop: S-loc 63.6 6.1 0.00013 34.6 2.7 33 524-558 76-108 (110)
75 PF12946 EGF_MSP1_1: MSP1 EGF 63.1 7.5 0.00016 27.1 2.4 26 442-469 9-35 (37)
76 PF13462 Thioredoxin_4: Thiore 54.6 68 0.0015 29.4 8.4 143 195-397 10-152 (162)
77 PF07172 GRP: Glycine rich pro 49.1 10 0.00022 32.6 1.5 20 16-35 7-26 (95)
78 PTZ00214 high cysteine membran 47.1 32 0.0007 41.0 5.8 22 546-569 749-770 (800)
79 KOG1215 Low-density lipoprotei 46.8 27 0.00058 42.3 5.3 59 501-562 339-400 (877)
80 COG1786 Swiveling domain assoc 45.4 1.6E+02 0.0034 26.7 8.3 76 94-185 44-122 (131)
81 PHA02887 EGF-like protein; Pro 44.4 16 0.00035 32.3 2.0 24 500-525 98-124 (126)
82 KOG3516 Neurexin IV [Signal tr 42.6 18 0.00039 43.8 2.7 36 520-557 540-576 (1306)
83 PF07974 EGF_2: EGF-like domai 41.0 29 0.00063 23.3 2.5 21 442-468 10-30 (32)
84 PRK03955 hypothetical protein; 39.5 2.3E+02 0.005 25.9 8.8 72 96-185 46-120 (131)
85 PTZ00459 mucin-associated surf 39.0 18 0.00038 37.8 1.8 7 1-7 1-7 (291)
86 PHA03099 epidermal growth fact 38.8 19 0.00041 32.3 1.6 22 500-523 57-81 (139)
87 COG4882 Predicted aminopeptida 37.1 2E+02 0.0044 30.8 9.0 80 101-188 90-171 (486)
88 KOG1226 Integrin beta subunit 36.6 57 0.0012 38.0 5.4 41 508-555 567-612 (783)
89 KOG1836 Extracellular matrix g 35.9 38 0.00083 43.5 4.3 54 501-557 749-807 (1705)
90 KOG1025 Epidermal growth facto 34.5 1.3E+02 0.0028 35.9 7.8 79 432-519 495-579 (1177)
91 KOG0196 Tyrosine kinase, EPH ( 32.2 39 0.00085 39.6 3.2 27 542-568 302-331 (996)
92 cd04727 pdxS PdxS is a subunit 32.0 50 0.0011 34.1 3.6 69 112-183 16-91 (283)
93 COG5540 RING-finger-containing 30.9 13 0.00028 38.2 -0.7 35 103-137 149-183 (374)
94 PF03302 VSP: Giardia variant- 30.2 1.3E+02 0.0029 32.8 6.9 46 405-467 3-50 (397)
95 PTZ00382 Variant-specific surf 28.8 74 0.0016 27.3 3.7 15 551-567 41-55 (96)
96 PHA02887 EGF-like protein; Pro 27.9 48 0.001 29.4 2.3 37 525-567 83-123 (126)
97 KOG4291 Mucin/alpha-tectorin [ 27.0 1.4E+02 0.0031 36.7 6.9 116 414-557 415-532 (1043)
98 KOG1226 Integrin beta subunit 26.7 1.4E+02 0.0031 34.9 6.4 15 507-523 605-620 (783)
99 KOG1215 Low-density lipoprotei 25.4 86 0.0019 38.0 4.8 75 425-522 325-401 (877)
100 PF00954 S_locus_glycop: S-loc 25.4 63 0.0014 28.1 2.7 31 479-517 78-108 (110)
101 PF13117 Cag12: Cag pathogenic 25.3 86 0.0019 27.8 3.5 30 101-131 82-111 (113)
102 KOG3514 Neurexin III-alpha [Si 23.7 48 0.001 39.9 2.0 36 527-568 625-661 (1591)
103 KOG4258 Insulin/growth factor 22.2 76 0.0016 37.5 3.2 56 508-566 263-324 (1025)
104 cd03029 GRX_hybridPRX5 Glutare 20.4 2E+02 0.0043 22.5 4.6 56 102-167 2-59 (72)
105 PF06858 NOG1: Nucleolar GTP-b 20.3 1.2E+02 0.0025 23.6 2.9 26 203-228 19-44 (58)
No 1
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.94 E-value=2.9e-26 Score=207.34 Aligned_cols=125 Identities=61% Similarity=1.032 Sum_probs=105.0
Q ss_pred CcCCCCCCCceEEEEEecCCCCCCCCCCCCCC-CCC-CCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCCCc
Q 006787 61 NFGIPDYGGFMVGSVIYPDKGASGCQPFEGDK-PFK-SKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL 138 (631)
Q Consensus 61 ~FG~~~~~~~i~g~lv~~~~~~~gC~~~~~~~-~~~-~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~~~ 138 (631)
|||.++||++++|.|++++++.+||++++... +.+ ..+..++||||+||+|+|.+|++|||++||++|||||+.++++
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 80 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL 80 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 79999999999999999989999999997311 111 1134589999999999999999999999999999999998878
Q ss_pred cccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 006787 139 ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (631)
Q Consensus 139 ~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~g~~V~v~l 186 (631)
+.|..+.++. ..++..+++||++||++++|+.|++.|++|..|+|+|
T Consensus 81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 8886654421 1144567899999999999999999999999999875
No 2
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.86 E-value=2.2e-22 Score=218.14 Aligned_cols=300 Identities=21% Similarity=0.368 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHcCCceeEEEEEEEecCcchhccccccccccccCCccCCCCCCCCCCCCC--CcchhHHHHHhhhhhhh
Q 006787 222 VKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPDPEQDFGEGY--QGKDVVFENLRQLCVHR 299 (631)
Q Consensus 222 ~~~f~~~~~~l~~~~~~~f~phy~~~~c~~~~~~~~~~~~~Ci~~GrYC~~dp~~~~~~~~--~G~dvv~e~lrqlCi~~ 299 (631)
-.-|+-.+.++..++.+.|.+||.+-.-.+.... +..+.||.-+..-.....+ .+-++=.+-...|=-|+
T Consensus 533 eNgfs~~g~~ftr~~evtf~g~~~~~vi~q~~~g--------~d~~~~l~ikt~~~G~vp~~p~~~~~hi~py~elyHys 604 (1289)
T KOG1214|consen 533 ENGFSLAGAAFTRDMEVTFYGGEETVVITQTAEG--------LDPENYLSIKTNIQGQVPYVPANFTAHISPYKELYHYS 604 (1289)
T ss_pred hccccccccccccCceEEecCCcceeeeeeecCC--------CCCCceEEEecccccccceeccccccccCcchhhhhcc
Confidence 4445556667777788999999986543222111 2333444433211000000 11111111111111121
Q ss_pred ---hccccCCCcchhhhHHHHhhhcCCc-------cccchhhhHHH-----HHHhcCCChhhhccccCCCcchhhchHHH
Q 006787 300 ---VANESNRSWVWWDYVTDFHIRCSMK-------EKRYSKECAEE-----VMKSLDLPIEKIRKCIGDPEADVENEVLK 364 (631)
Q Consensus 300 ---~~~~~~~~~~ww~Y~~~f~~~C~~~-------~~~y~~~C~~~-----v~~~~~~~~~~v~~C~~d~~~~~~n~iL~ 364 (631)
+++. .=-+|+..|+..|+.. +..| .+|... ....++++++.+++ .++.+..+|+
T Consensus 605 ~s~vtst-----ssr~y~~t~ga~~S~~~sy~~hq~ity-q~C~h~~~~p~~p~tqql~vd~vfa-----lyn~ee~~lr 673 (1289)
T KOG1214|consen 605 DSTVTST-----SSRDYSLTFGAINSQTWSYRIHQNITY-QVCRHAPRHPSFPTTQQLNVDRVFA-----LYNDEERVLR 673 (1289)
T ss_pred cceeecc-----cccceeeecCcccccceeEEEeeccee-EEeecCCCCCCCCCceEeeccccee-----ccCccccchh
Confidence 1122 1234666777777532 1222 355543 35667788888888 7788899999
Q ss_pred HHHHHhcCCCCCCceeecceeeeeccccCCcccc----------cccccccc-cCccccCCCCcccCCcccccccccccc
Q 006787 365 TEQEFQVGRGSRGDVTILPTLVINDVQYRGKLER----------TAVLRAIC-AGFKEATEPQICLTGDLETNECLERNG 433 (631)
Q Consensus 365 ~e~~~~~~~~~~~~v~~~P~l~iN~~~y~G~l~~----------~~v~~~~C-~Gf~~~~~g~~C~~~~~d~deC~~~~~ 433 (631)
+...++++...++ .-|+ ..++||.|..-. ..-+.+.| .||+. +|..|. |.+||++.++
T Consensus 674 ~a~Sn~igpV~E~---S~~~--~~npCy~gsh~cdt~a~C~pg~~~~~tcecs~g~~g--dgr~c~----d~~eca~~~~ 742 (1289)
T KOG1214|consen 674 FAVSNQIGPVKED---SDPT--PVNPCYDGSHMCDTTARCHPGTGVDYTCECSSGYQG--DGRNCV----DENECATGFH 742 (1289)
T ss_pred hhhhhcccceecC---CCCc--ccccceecCcccCCCccccCCCCcceEEEEeeccCC--CCCCCC----ChhhhccCCC
Confidence 9999999875432 2222 367888776611 11345566 89987 899999 6889999999
Q ss_pred CCCcccCCCCCceeeCCCceeeecCCCCCeeeeCCCccceeecC----CCcccCCCCCCCCCCCCCCccccceeCC--Cc
Q 006787 434 GCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDGYISCQAYG----PARCSINNGGCWSDTKNGLTFSACSESQ--IT 507 (631)
Q Consensus 434 ~C~~~~~~~~~~C~~~~g~~~C~C~~~~G~~~~gdg~~~C~~i~----~~~C~~~~~~C~~~~~~g~~~~~C~~~~--~~ 507 (631)
.|. +++.|+|.+++|+|+|.. ||.|.+|+ .+|..+. ++.|....+.|... .++.|+... .|
T Consensus 743 ~CG-----p~s~Cin~pg~~rceC~~--gy~F~dd~-~tCV~i~~pap~n~Ce~g~h~C~i~-----g~a~c~~hGgs~y 809 (1289)
T KOG1214|consen 743 RCG-----PNSVCINLPGSYRCECRS--GYEFADDR-HTCVLITPPAPANPCEDGSHTCAIA-----GQARCVHHGGSTY 809 (1289)
T ss_pred CCC-----CCceeecCCCceeEEEee--cceeccCC-cceEEecCCCCCCccccCccccCcC-----CceEEEecCCceE
Confidence 998 889999999999999999 99999999 7898763 46788887888765 236788877 89
Q ss_pred eeeCCCCcccCCCccccCcCccCCCCCCCCCCeeeecCCCeEEecCCCCeecCCCCceeec
Q 006787 508 GCHCPKGFRGDGHKCEDINECKERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDACIER 568 (631)
Q Consensus 508 ~C~C~~Gy~g~~~~C~dideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~d~~~C~~~ 568 (631)
.|.|.+||.||+..|.|+|||.++ .|+ +.+.|.|++|+|.|+|.+|| .+||..|.+.
T Consensus 810 ~C~CLPGfsGDG~~c~dvDeC~ps-rCh-p~A~CyntpgsfsC~C~pGy--~GDGf~CVP~ 866 (1289)
T KOG1214|consen 810 SCACLPGFSGDGHQCTDVDECSPS-RCH-PAATCYNTPGSFSCRCQPGY--YGDGFQCVPD 866 (1289)
T ss_pred EEeecCCccCCccccccccccCcc-ccC-CCceEecCCCcceeecccCc--cCCCceecCC
Confidence 999999999999999999999987 899 99999999999999999999 5789999886
No 3
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.86 E-value=3.1e-21 Score=174.95 Aligned_cols=118 Identities=25% Similarity=0.411 Sum_probs=95.0
Q ss_pred ccccCcCCCCCCC-ceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCC
Q 006787 57 SAIGNFGIPDYGG-FMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVD 135 (631)
Q Consensus 57 ~~~a~FG~~~~~~-~i~g~lv~~~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~ 135 (631)
..+|.||.+.+.. .+.|.|+. ++|.+||+++.+...++ ++|+||+||+|+|.+|+++||++||+||||+|+.+
T Consensus 2 ~~pa~FG~~~~~~~~~~g~l~~-~~p~~gC~~~~~~~~~~-----gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~ 75 (126)
T cd02126 2 AGPAQFGMDLTGDKAGVGRVVK-AKPYRACSEITNAEEVK-----GKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNE 75 (126)
T ss_pred CCCcccCCcCCCCCCceEEEEe-CCchhcccCCCCccccC-----ceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCC
Confidence 3578999888764 68899877 56789999887433444 78999999999999999999999999999999876
Q ss_pred CC------ccccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 006787 136 EP------LITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (631)
Q Consensus 136 ~~------~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~g~~V~v~l 186 (631)
++ ++.|....+ ...+++||+++|++.+|+.|+++|+++..|++.|
T Consensus 76 ~~~~~~~~~~~m~~~~~------~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~~ 126 (126)
T cd02126 76 GSSSDTAPMFAMSGDGD------STDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126 (126)
T ss_pred CccccccceeEeecCCC------CCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEeC
Confidence 43 345532211 1236899999999999999999999999888764
No 4
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.86 E-value=6.7e-21 Score=178.40 Aligned_cols=122 Identities=26% Similarity=0.438 Sum_probs=101.3
Q ss_pred ceeecccccCcCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEE
Q 006787 52 RSKHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVA 131 (631)
Q Consensus 52 ~~~~~~~~a~FG~~~~~~~i~g~lv~~~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~ 131 (631)
...+++..|+||.++++++++|.|++ ++|.+||+++++.+ +......++||||+||+|+|.+|++|||++||++||||
T Consensus 21 ~~~~~~~~A~FG~~~~~~~~~g~lv~-~~p~~gC~~~~~~~-~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~ 98 (153)
T cd02123 21 TDEFDDLPANFGPIPPGSGLKGVLVV-AEPLNACSPIENPP-LNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVY 98 (153)
T ss_pred cceEeeecccCCCCCCCCceEEEEEe-CCccccCCCCcccc-cccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEE
Confidence 34578889999999999999999876 67789999987322 22234458999999999999999999999999999999
Q ss_pred eCCCCCccccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHcCCE
Q 006787 132 DSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEE 181 (631)
Q Consensus 132 ~~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~g~~ 181 (631)
|+.++++..|...+. ...+++||+++|++++|+.|++.++.+..
T Consensus 99 n~~~~~~~~m~~~~~------~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 99 NDESNDLISMSGNDQ------EIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred ECCCCcceeccCCCC------CCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 998777777754322 12478999999999999999999998876
No 5
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.86 E-value=4.4e-21 Score=171.34 Aligned_cols=114 Identities=19% Similarity=0.324 Sum_probs=92.4
Q ss_pred CcCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCC---C
Q 006787 61 NFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDE---P 137 (631)
Q Consensus 61 ~FG~~~~~~~i~g~lv~~~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~---~ 137 (631)
+||.+.....+.|.|+. ++|.+||++..+.++++ ++|+||+||+|+|.+|++|||++||+||||||+.++ .
T Consensus 1 ~~~~~~~~~~~~~~lv~-~~p~~gC~~~~~~~~~~-----g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~ 74 (118)
T cd02127 1 DFGTIFNTRYKHVPLVP-ADPLEACEELRNIHDIN-----GNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEY 74 (118)
T ss_pred CCCccccccccceEEEE-CCccccCCCCCCccccC-----CeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccc
Confidence 48877777778887765 67889999876443444 789999999999999999999999999999998754 2
Q ss_pred ccccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHcCCEEEEEEE
Q 006787 138 LITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLD 187 (631)
Q Consensus 138 ~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~g~~V~v~l~ 187 (631)
.+.|... +...+++||+++|++++|+.|++.+++|..|++.+.
T Consensus 75 ~~~m~~~-------~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 75 YVEMIQD-------DSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred ceEecCC-------CCCCCceEEEEEecHHHHHHHHHHHHcCCceEEeee
Confidence 3456332 123478999999999999999999999998877664
No 6
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.85 E-value=6.3e-21 Score=174.94 Aligned_cols=118 Identities=23% Similarity=0.360 Sum_probs=95.9
Q ss_pred ccccCcCCCCCCCceEEEEEe--cCCCCCCCCCCCCCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCC
Q 006787 57 SAIGNFGIPDYGGFMVGSVIY--PDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSV 134 (631)
Q Consensus 57 ~~~a~FG~~~~~~~i~g~lv~--~~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~ 134 (631)
..+|.||.+.+...+.|.|++ ++++.+||+++++.+.. ....++||||+||+|+|.+|++|||++||++|||||+.
T Consensus 17 ~~~a~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~~~~--~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~ 94 (138)
T cd02122 17 TESGRYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRFPIP--PNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNP 94 (138)
T ss_pred ccccccCCCCCCCccEEEEecCCCCCCcCCCCCCccccCC--ccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECC
Confidence 348899999999999998764 45678999998731110 12348999999999999999999999999999999998
Q ss_pred C--CCccccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 006787 135 D--EPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (631)
Q Consensus 135 ~--~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~g~~V~v~l 186 (631)
+ +.++.|.... ...||+++|++.+|+.|+++|++|.+|+|++
T Consensus 95 ~~~~~~~~m~~~~----------~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 95 GTGNETVKMSHPG----------TGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred CCCCceeeccCCC----------CCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 5 2356663322 2479999999999999999999999988864
No 7
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.84 E-value=4.2e-20 Score=170.46 Aligned_cols=122 Identities=23% Similarity=0.371 Sum_probs=97.8
Q ss_pred cceeecccccCcCCCCCC---CceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcE
Q 006787 51 LRSKHDSAIGNFGIPDYG---GFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAA 127 (631)
Q Consensus 51 ~~~~~~~~~a~FG~~~~~---~~i~g~lv~~~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~a 127 (631)
....+...+|.||..++. ..+.+.++. .++.+||+++++ +++ ++||||+||+|+|.+|++|||++||++
T Consensus 15 ~~~~~~~~~a~FG~~~p~~~~~~~~~~lv~-~~~~~gC~~~~~--~~~-----g~IvLV~RG~C~F~~K~~nA~~aGA~a 86 (139)
T cd02132 15 EGDELVGVTARFGASLPSKEDNANKTRAVL-ANPLDCCSPSTS--KLS-----GSIALVERGECAFTEKAKIAEAGGASA 86 (139)
T ss_pred cccEEEeeccccCCCCCCcccCccEEEEEE-CCcccccCCCCc--ccC-----CeEEEEECCCCCHHHHHHHHHHcCCcE
Confidence 344688899999977655 357788766 567899999862 343 789999999999999999999999999
Q ss_pred EEEEeCCCCCccccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 006787 128 VLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (631)
Q Consensus 128 vII~~~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~g~~V~v~l 186 (631)
|||||+.++ +..|....+ +...+++||+++|++.+|+.|+++|++|..|++++
T Consensus 87 vIv~n~~~~-~~~~~~~~~-----~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~~ 139 (139)
T cd02132 87 LLIINDQEE-LYKMVCEDN-----DTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139 (139)
T ss_pred EEEEECCCc-ccccccCCC-----CCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEeC
Confidence 999998754 455643322 12336799999999999999999999999988764
No 8
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.77 E-value=1.4e-18 Score=154.80 Aligned_cols=105 Identities=30% Similarity=0.338 Sum_probs=82.8
Q ss_pred cccCcCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCC-
Q 006787 58 AIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDE- 136 (631)
Q Consensus 58 ~~a~FG~~~~~~~i~g~lv~~~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~- 136 (631)
..|+||+ ++...+++.. ..+|.+||++++ ..+++ ++||||+||+|+|.+|++|||++||++|||||+.++
T Consensus 6 ~~~~~~~-~~~~~~~~~~--~~~p~~gC~~~~-~~~l~-----gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~ 76 (117)
T cd04813 6 RYASFSP-ILNPHLRGSY--KVSPTDACSLQE-HAEID-----GKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGR 76 (117)
T ss_pred cccccCC-ccCccccccc--cCCCCCCCCCCC-cCCcC-----CeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcc
Confidence 4678994 4555566654 377889999884 34444 789999999999999999999999999999998864
Q ss_pred CccccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHc
Q 006787 137 PLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (631)
Q Consensus 137 ~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~ 178 (631)
.++.|..+.+ ..+++||+++|++++|+.|++++.+
T Consensus 77 ~~~~m~~~~~-------~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 77 GLITMFSNGD-------TDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred cceecccCCC-------CCCcEEEEEEEcHHHHHHHHHhccc
Confidence 3556643322 3478999999999999999988754
No 9
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.76 E-value=4.9e-18 Score=150.78 Aligned_cols=91 Identities=22% Similarity=0.270 Sum_probs=71.1
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCCCccccCCCCCCCCcCCccccc
Q 006787 79 DKGASGCQPFEG-DKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKI 157 (631)
Q Consensus 79 ~~~~~gC~~~~~-~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~~~~~m~~~~~~~~~~~~~~~i 157 (631)
.+|..||++.+. ..+++ ++|+||+||+|+|.+|++|||++||+|||||||.+.. .+.. ..+...++
T Consensus 27 ~~~~~gC~~~~~~~~~l~-----gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~--~~~~------~~~~~~~v 93 (120)
T cd02129 27 LTSSVLCSASDVPPGGLK-----GKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLV--PPSG------NRSEYEKI 93 (120)
T ss_pred CCCcCCCCccccCccccC-----CeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCC--CCCC------CCCCCcCC
Confidence 677899998772 23444 7799999999999999999999999999999987431 1111 11123578
Q ss_pred CccEEEEeHHHHHHHHHHHHcCCEE
Q 006787 158 GIPSALIDRAFGLSLKEALKKGEEV 182 (631)
Q Consensus 158 ~IP~~~I~~~~G~~l~~~l~~g~~V 182 (631)
+||++||++++|+.|++.+.++-.|
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~~~~v 118 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGDSVKV 118 (120)
T ss_pred cccEEEEeHHHHHHHHHHhccCcEE
Confidence 9999999999999999999755443
No 10
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.74 E-value=2.5e-17 Score=148.97 Aligned_cols=114 Identities=24% Similarity=0.349 Sum_probs=88.2
Q ss_pred CcCCCCCCCceEEEEEecCC-CCCCCCCCC-CCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCCCc
Q 006787 61 NFGIPDYGGFMVGSVIYPDK-GASGCQPFE-GDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL 138 (631)
Q Consensus 61 ~FG~~~~~~~i~g~lv~~~~-~~~gC~~~~-~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~~~ 138 (631)
.|+...+.++++|.|++... ..+||++.+ +..+++ ++||||+||+|+|.+|++|||++||++|||+|+.++..
T Consensus 7 ~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~~~~~-----GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~ 81 (122)
T cd04816 7 SYSPSTPPGGVTAPLVPLDPERPAGCDASDYDGLDVK-----GAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGG 81 (122)
T ss_pred eccCCCCCCCcEEEEEEcCCCCccCCCccccCCCCcC-----CeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCcc
Confidence 46656667889999988543 259999876 233444 78999999999999999999999999999999876433
Q ss_pred cccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 006787 139 ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (631)
Q Consensus 139 ~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~g~~V~v~l 186 (631)
..+....+ ...++||+++|++++|+.|++++++|.+|++++
T Consensus 82 ~~~~~~~~-------~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~~ 122 (122)
T cd04816 82 TAGTLGAP-------NIDLKVPVGVITKAAGAALRRRLGAGETLELDA 122 (122)
T ss_pred ccccccCC-------CCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEeC
Confidence 22111110 135689999999999999999999998887763
No 11
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.73 E-value=2.9e-18 Score=153.19 Aligned_cols=161 Identities=22% Similarity=0.314 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHhcccceeeEEEee-ceEEEEcCCCcceeeccccc-CcCCCCCCCceEEEEEecCCCCCCCCCCCCC
Q 006787 14 SKKLTALLLILTVVFSSSVSARFVVEK-SSIRVLHPQSLRSKHDSAIG-NFGIPDYGGFMVGSVIYPDKGASGCQPFEGD 91 (631)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~v~~-~~~~v~~p~~~~~~~~~~~a-~FG~~~~~~~i~g~lv~~~~~~~gC~~~~~~ 91 (631)
.+++++++|...++++.--.-.+..+. -.|+|++|..++.+|...+| .||..-+ .++.+.-+++++|..||+.+.+.
T Consensus 5 gWl~l~~~L~~~vaa~~~~~~~v~~qD~~~F~vlsP~~l~Yty~~~pAkdfG~~F~-~r~e~~~lV~adPp~aC~elrN~ 83 (193)
T KOG3920|consen 5 GWLLLSFLLIIQVAAAKIPYEEVENQDNMLFTVLSPYTLAYTYQMKPAKDFGVHFP-DRFENLELVLADPPHACEELRNE 83 (193)
T ss_pred eehHHHHHHHHHHHHccCCcceeeecceEEEEecCcccEEEEEEecchhhhccccc-hhhcCcceeecCChhHHHHHhhc
Confidence 346677777776665542222332222 57899999999999999999 8996543 45666655669999999999855
Q ss_pred CCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCCC-----ccccCCCCCCCCcCCcccccCccEEEEeH
Q 006787 92 KPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEP-----LITMDSPEESTDANGYVEKIGIPSALIDR 166 (631)
Q Consensus 92 ~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~~-----~~~m~~~~~~~~~~~~~~~i~IP~~~I~~ 166 (631)
.... +.|+||+||+|||..|.+|+|+|||.|+||.|+.... ++.|-. |.+.++.+||++++-.
T Consensus 84 ~f~~-----d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~-------D~sq~~AniPa~fllg 151 (193)
T KOG3920|consen 84 IFAP-----DSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIP-------DESQDRANIPAVFLLG 151 (193)
T ss_pred ccCC-----CcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcC-------cccccccCCceEEEec
Confidence 4444 5699999999999999999999999999999977432 356632 2345678999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEE
Q 006787 167 AFGLSLKEALKKGEEVVIKLD 187 (631)
Q Consensus 167 ~~G~~l~~~l~~g~~V~v~l~ 187 (631)
.+|-.++.-|++-..+-+.++
T Consensus 152 ~~Gy~ir~sL~r~~r~ha~i~ 172 (193)
T KOG3920|consen 152 VTGYYIRVSLKRYFRDHAKID 172 (193)
T ss_pred cceEEEehhHHHhCCccEEEe
Confidence 999999988886543333333
No 12
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.72 E-value=7.9e-17 Score=145.70 Aligned_cols=109 Identities=26% Similarity=0.321 Sum_probs=83.2
Q ss_pred cCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCCCcccc
Q 006787 62 FGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITM 141 (631)
Q Consensus 62 FG~~~~~~~i~g~lv~~~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~~~~~m 141 (631)
|++.+. +..+|+|++. +.+||++.+.+.++ +++||||+||+|+|.+|++||+++||++|||||+........
T Consensus 14 ~~~~~~-~~~~g~lv~~--~~~gC~~~~~~~~~-----~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~ 85 (122)
T cd02130 14 FTYSPA-GEVTGPLVVV--PNLGCDAADYPASV-----AGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSG 85 (122)
T ss_pred cccCCC-CCcEEEEEEe--CCCCCCcccCCcCC-----CCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccc
Confidence 444444 4567999884 35899986633334 388999999999999999999999999999999873222111
Q ss_pred CCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 006787 142 DSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (631)
Q Consensus 142 ~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~g~~V~v~l 186 (631)
... ...+..||+++|++++|+.|++.+++|.+|+++|
T Consensus 86 ~~~--------~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~ 122 (122)
T cd02130 86 TLG--------EPSGPYVPTVGISQEDGKALVAALANGGEVSANL 122 (122)
T ss_pred ccC--------CCCCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 111 1125689999999999999999999999988864
No 13
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.71 E-value=1.3e-16 Score=143.49 Aligned_cols=113 Identities=35% Similarity=0.553 Sum_probs=91.4
Q ss_pred ccCcCCCCCC---CceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCC
Q 006787 59 IGNFGIPDYG---GFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVD 135 (631)
Q Consensus 59 ~a~FG~~~~~---~~i~g~lv~~~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~ 135 (631)
+|.||..... ..+.|.++. +++.++|++.....+++ ++|+|++||+|+|.+|+++|+++||+++||+|+.+
T Consensus 2 ~a~fg~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~~~v~-----GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~ 75 (118)
T cd04818 2 SAGFGPALTNVTADVVLAGAAP-ASNTDGCTAFTNAAAFA-----GKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVA 75 (118)
T ss_pred CcccCCcCccccccceeEEEec-CCcccccCCCCcCCCCC-----CEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCC
Confidence 5789977664 457888876 77889999986323343 88999999999999999999999999999999886
Q ss_pred CC-ccccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 006787 136 EP-LITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (631)
Q Consensus 136 ~~-~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~g~~V~v~l 186 (631)
++ .+.|..+. ....||+++|++++|+.|++++++|.+|+++|
T Consensus 76 ~~~~~~~~~~~---------~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~ 118 (118)
T cd04818 76 GGAPITMGGDD---------PDITIPAVMISQADGDALKAALAAGGTVTVTL 118 (118)
T ss_pred CCcceeccCCC---------CCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 42 34553221 24579999999999999999999999888864
No 14
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.64 E-value=2e-15 Score=137.08 Aligned_cols=91 Identities=24% Similarity=0.384 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCCCccccCCCCCCCCcCCccccc
Q 006787 79 DKGASGCQPFEG-DKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKI 157 (631)
Q Consensus 79 ~~~~~gC~~~~~-~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~~~~~m~~~~~~~~~~~~~~~i 157 (631)
+.+.+||++++. .+++ +++||||+||+|+|.+|++|||++||++|||||+.++.. .+... ...
T Consensus 38 ~~~~~gC~~~~~~~~~~-----~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~-~~~~~----------~~~ 101 (129)
T cd02124 38 SVADDACQPLPDDTPDL-----SGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPT-DQVGS----------DAD 101 (129)
T ss_pred CCCcccCcCCCcccccc-----cCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcc-cccCC----------CCc
Confidence 457799999862 2233 388999999999999999999999999999999885543 23211 123
Q ss_pred CccEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 006787 158 GIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (631)
Q Consensus 158 ~IP~~~I~~~~G~~l~~~l~~g~~V~v~l 186 (631)
.||.+++ +++|+.|+++|++|..|+++|
T Consensus 102 ~~~~~~~-~~~G~~l~~~l~~G~~vtv~f 129 (129)
T cd02124 102 SIIAAVT-PEDGEAWIDALAAGSNVTVDF 129 (129)
T ss_pred ceeeEEe-HHHHHHHHHHHhcCCeEEEeC
Confidence 4666666 999999999999999888764
No 15
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.5e-15 Score=156.33 Aligned_cols=116 Identities=23% Similarity=0.291 Sum_probs=95.3
Q ss_pred eecccccCcCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeC
Q 006787 54 KHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADS 133 (631)
Q Consensus 54 ~~~~~~a~FG~~~~~~~i~g~lv~~~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~ 133 (631)
.+...+|.||......++.|.++. ++|.+||+++.+.+.- +.....++|||+||+|+|.+|++|||++|++|+|||||
T Consensus 35 sf~d~~a~f~~s~~~e~~~G~l~~-~ep~~aC~~i~~~p~~-~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn 112 (348)
T KOG4628|consen 35 SFADLPALFGPSLPSEGNLGVLVV-AEPLNACNPITNFPEH-STRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNN 112 (348)
T ss_pred cccCCccccCCccccccceeeeec-CCCccccCccccCccC-CCCCcceEEEEEccCCchHHHHhhcccccCceEEEecC
Confidence 678889999999998999998755 7788999999842222 34566899999999999999999999999999999998
Q ss_pred CCCC-ccccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHcCC
Q 006787 134 VDEP-LITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGE 180 (631)
Q Consensus 134 ~~~~-~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~g~ 180 (631)
.+.+ ++.|.... .++.|+++||+...|+.|+++.....
T Consensus 113 ~~~~~lv~~~~~~---------~~v~i~~~~vs~~~ge~l~~~~~~~~ 151 (348)
T KOG4628|consen 113 VGSEDLVAMASNP---------SKVDIHIVFVSVFSGELLSSYAGRTE 151 (348)
T ss_pred CCCchheeeccCC---------ccceeEEEEEeeehHHHHHHhhcccc
Confidence 7654 56663222 37899999999999999999765443
No 16
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.59 E-value=1.3e-14 Score=132.62 Aligned_cols=100 Identities=28% Similarity=0.250 Sum_probs=72.4
Q ss_pred CCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCEEEEEecCccC-----HHHHHHHHHHcCCcEEEEEeCCC--CCc
Q 006787 66 DYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECY-----FALKVWHGQQAGAAAVLVADSVD--EPL 138 (631)
Q Consensus 66 ~~~~~i~g~lv~~~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~Cs-----F~~Kv~nAq~aGA~avII~~~~~--~~~ 138 (631)
+..+.++|.|++.. .-+|+-. ..+++ ++|+||+||.|+ |.+|++|||+|||+|||||||.+ +.+
T Consensus 31 ~~~g~~tg~lv~~g--~~g~d~~--~~d~~-----GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~ 101 (139)
T cd04817 31 PVTGSATGSLYYCG--TSGGSYI--CGGMA-----GKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQ 101 (139)
T ss_pred ccCCcceEEEEEcc--CCCcccc--CCCcC-----ccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcc
Confidence 34467889888743 2446321 12333 779999999999 99999999999999999999983 322
Q ss_pred cccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHcCCEE
Q 006787 139 ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEV 182 (631)
Q Consensus 139 ~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~g~~V 182 (631)
..+. .++ ..+++||+++|++++|+.|+++|.++..|
T Consensus 102 ~~~l-g~~-------~~~~~IP~v~is~~dG~~L~~~l~~~~tv 137 (139)
T cd04817 102 NPFL-VDT-------NNDTTIPSVSVDRADGQALLAALGQSTTV 137 (139)
T ss_pred cccc-cCC-------CCCceEeEEEeeHHHHHHHHHHhcCCCee
Confidence 2221 111 12579999999999999999999655444
No 17
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.46 E-value=4.8e-13 Score=140.20 Aligned_cols=137 Identities=22% Similarity=0.355 Sum_probs=102.7
Q ss_pred cccccCcCCCCCCCceEEEEEe--cCCCCCCCCCCCCCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeC
Q 006787 56 DSAIGNFGIPDYGGFMVGSVIY--PDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADS 133 (631)
Q Consensus 56 ~~~~a~FG~~~~~~~i~g~lv~--~~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~ 133 (631)
....+.||..+....-...+.+ -.+|.|-|++.. ..+. +++++|.||+|+|.+|+++||++||+|++|.||
T Consensus 56 a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~--~kl~-----~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~ 128 (541)
T KOG2442|consen 56 AGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQ--SKLS-----GKVALVFRGNCSFTEKAKLAQAAGASALLIINN 128 (541)
T ss_pred hhhhhhcCCcCCCCccccccchhhhcCCccccCCCC--cccc-----ceeEEEecccceeehhhhhhhhcCceEEEEEcC
Confidence 4566678876655322222211 146788898875 2333 669999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHcCCEEEEEEEecCCCCCCCCceeEE-----------
Q 006787 134 VDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQRVEYE----------- 202 (631)
Q Consensus 134 ~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~g~~V~v~l~~~~~~p~~~~~v~~~----------- 202 (631)
.. ++.-|...+. ....+++||++||++++|+.|.+....+.+|++.|+-. +...|+|.
T Consensus 129 ~~-d~~~~~~~~~-----~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYaP-----k~P~vD~~~v~iwlmAVgT 197 (541)
T KOG2442|consen 129 KK-DLLFMPCGNK-----ETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYAP-----KRPAVDYAMVFIWLMAVGT 197 (541)
T ss_pred ch-hhccCCCCCC-----CccccccceEEEEEhhhHHHHHhhhccCCeEEEEEECC-----CCCCccHHHHHHHHHHHhH
Confidence 74 4545543332 23568999999999999999999999999999999973 24566665
Q ss_pred -----eeccCCcc
Q 006787 203 -----LWTNSNDE 210 (631)
Q Consensus 203 -----~w~~~~d~ 210 (631)
||....+.
T Consensus 198 Va~ggyWs~~t~~ 210 (541)
T KOG2442|consen 198 VACGGYWSGLTER 210 (541)
T ss_pred hhccchhhhccCh
Confidence 88888775
No 18
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.45 E-value=9.5e-14 Score=120.96 Aligned_cols=96 Identities=25% Similarity=0.404 Sum_probs=63.6
Q ss_pred CCceEEEEEecCC--CCCCCCCCC-CCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCCCccccCCC
Q 006787 68 GGFMVGSVIYPDK--GASGCQPFE-GDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSP 144 (631)
Q Consensus 68 ~~~i~g~lv~~~~--~~~gC~~~~-~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~~~~~m~~~ 144 (631)
++...+.||.+.. ....|.+.. +...++ ++||||+||.|+|.+|++|||++||+||||+|.. .....+...
T Consensus 3 ~~~~~~~lV~~~~~~~~~~~~~~~~~~~~~~-----gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~-~~~~~~~~~ 76 (101)
T PF02225_consen 3 SGTVTGPLVPAGNGIDEGDCCPSDYNGSDVK-----GKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPP-PNNGSMIDS 76 (101)
T ss_dssp -EEEEEEEEEETTEEECCHHHHHHTSTSTCT-----TSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TS-CSCTTTTCE
T ss_pred CCCEEEEEEEecCCCCcccccccccCCcccc-----ceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCC-ccccCcccc
Confidence 4567788873211 113333322 333444 7799999999999999999999999999999922 211112111
Q ss_pred CCCCCcCCcccccCccEEEEeHHHHHHHHHHH
Q 006787 145 EESTDANGYVEKIGIPSALIDRAFGLSLKEAL 176 (631)
Q Consensus 145 ~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l 176 (631)
.....++||+++|++++|+.|++++
T Consensus 77 -------~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 77 -------EDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp -------BTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred -------cCCCCcEEEEEEeCHHHHhhhhccC
Confidence 1234679999999999999999875
No 19
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.43 E-value=6.9e-13 Score=120.29 Aligned_cols=100 Identities=29% Similarity=0.334 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCCCccccCCCCCCCCcCCcccccC
Q 006787 79 DKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIG 158 (631)
Q Consensus 79 ~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~~~~~m~~~~~~~~~~~~~~~i~ 158 (631)
..+..+|.+... ++......++|||++||.|+|.+|+++||++||+||||+++.+.....|....+ ......
T Consensus 27 ~~~~~~C~~~~~--~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~------~~~~~~ 98 (126)
T cd00538 27 AGPLVGCGYGTT--DDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGL------ESTDPS 98 (126)
T ss_pred ccceEEEecCcc--cccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccC------CCCCCc
Confidence 345578987641 233334458899999999999999999999999999999988643333322211 013468
Q ss_pred ccEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 006787 159 IPSALIDRAFGLSLKEALKKGEEVVIKL 186 (631)
Q Consensus 159 IP~~~I~~~~G~~l~~~l~~g~~V~v~l 186 (631)
||+++|++++|+.|+++++++..|++.+
T Consensus 99 iP~~~is~~~g~~l~~~~~~~~~v~~~~ 126 (126)
T cd00538 99 IPTVGISYADGEALLSLLEAGKTVTVDL 126 (126)
T ss_pred EeEEEeCHHHHHHHHHHHhcCCceEEeC
Confidence 9999999999999999999988887753
No 20
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=99.42 E-value=1.5e-13 Score=161.25 Aligned_cols=110 Identities=33% Similarity=0.801 Sum_probs=92.8
Q ss_pred cccccccccCCCcccCCCCCceeeCC-CceeeecCCCCCeeeeCCCccceeecCCCcccCCCCCCCCCCCCCCcccccee
Q 006787 425 TNECLERNGGCWQDTQANITACKDTF-RGRLCECPIVKGVQYRGDGYISCQAYGPARCSINNGGCWSDTKNGLTFSACSE 503 (631)
Q Consensus 425 ~deC~~~~~~C~~~~~~~~~~C~~~~-g~~~C~C~~~~G~~~~gdg~~~C~~i~~~~C~~~~~~C~~~~~~g~~~~~C~~ 503 (631)
.+.|..++ |+ +++.|..++ |+|.|.|++ +|.|.. |+- +.+.|..++ |++| ++|..
T Consensus 3864 ~d~C~~np--Cq-----hgG~C~~~~~ggy~CkCps----qysG~~---CEi-~~epC~snP------C~~G---gtCip 3919 (4289)
T KOG1219|consen 3864 TDPCNDNP--CQ-----HGGTCISQPKGGYKCKCPS----QYSGNH---CEI-DLEPCASNP------CLTG---GTCIP 3919 (4289)
T ss_pred ccccccCc--cc-----CCCEecCCCCCceEEeCcc----cccCcc---ccc-ccccccCCC------CCCC---CEEEe
Confidence 47888777 88 789999875 579999999 777665 985 468888655 6666 88999
Q ss_pred CC-CceeeCCCCcccCCCccc-c-CcCccCCCCCCCCCCeeeecCCCeEEecCCCCeecCCCCcee
Q 006787 504 SQ-ITGCHCPKGFRGDGHKCE-D-INECKERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDACI 566 (631)
Q Consensus 504 ~~-~~~C~C~~Gy~g~~~~C~-d-ideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~d~~~C~ 566 (631)
.. +|.|.|+.||+|. .|+ + |+||+.+ +|. .++.|+|++|+|.|.|.+||. |.+|.
T Consensus 3920 ~~n~f~CnC~~gyTG~--~Ce~~Gi~eCs~n-~C~-~gg~C~n~~gsf~CncT~g~~----gr~c~ 3977 (4289)
T KOG1219|consen 3920 FYNGFLCNCPNGYTGK--RCEARGISECSKN-VCG-TGGQCINIPGSFHCNCTPGIL----GRTCC 3977 (4289)
T ss_pred cCCCeeEeCCCCccCc--eeecccccccccc-ccc-CCceeeccCCceEeccChhHh----cccCc
Confidence 99 9999999999998 898 4 9999987 999 999999999999999999995 45554
No 21
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.36 E-value=1.3e-11 Score=114.76 Aligned_cols=100 Identities=27% Similarity=0.284 Sum_probs=74.5
Q ss_pred cCcCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCCCcc
Q 006787 60 GNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLI 139 (631)
Q Consensus 60 a~FG~~~~~~~i~g~lv~~~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~~~~ 139 (631)
..++.+...+...+.+++... |.+- ++.....+++||||+||+|+|.+|+++|+++||++|||+|+.... .
T Consensus 15 ~~~~~~~~~~~~~~~lv~~g~----g~~~----d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~-~ 85 (143)
T cd02133 15 AFSGNPTDLLGKTYELVDAGL----GTPE----DFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL-I 85 (143)
T ss_pred ccCCCcCCCCCcEEEEEEccC----Cchh----ccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc-c
Confidence 446666666778999988432 2222 233334458899999999999999999999999999999987442 2
Q ss_pred ccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHc
Q 006787 140 TMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (631)
Q Consensus 140 ~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~ 178 (631)
.|.. + ....||+++|++.+|+.|++++++
T Consensus 86 ~~~~--~--------~~~~iP~v~Is~~dG~~L~~~l~~ 114 (143)
T cd02133 86 PGTL--G--------EAVFIPVVFISKEDGEALKAALES 114 (143)
T ss_pred cccC--C--------CCCeEeEEEecHHHHHHHHHHHhC
Confidence 2211 0 134799999999999999999987
No 22
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.29 E-value=3.3e-11 Score=109.63 Aligned_cols=105 Identities=21% Similarity=0.214 Sum_probs=76.6
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCEEEEEecCcc--CHHHHHHHHHHcCCcEEEEEeCCCCCccccCCCC
Q 006787 68 GGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGEC--YFALKVWHGQQAGAAAVLVADSVDEPLITMDSPE 145 (631)
Q Consensus 68 ~~~i~g~lv~~~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~C--sF~~Kv~nAq~aGA~avII~~~~~~~~~~m~~~~ 145 (631)
.+.++|.+++.. .| .+- +|.+...+++||||+||.| +|.+|+++|+++||+||||+|+.+..+..+....
T Consensus 20 ~~~~~~~lV~~g---~G-~~~----d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~ 91 (127)
T cd04819 20 SGEAKGEPVDAG---YG-LPK----DFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEG 91 (127)
T ss_pred CCCeeEEEEEeC---CC-CHH----HcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccc
Confidence 356799998853 22 211 2223334588999999999 9999999999999999999987755443221111
Q ss_pred CCCCcCCcccccCccEEEEeHHHHHHHHHHHHcCCEEEEE
Q 006787 146 ESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIK 185 (631)
Q Consensus 146 ~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~g~~V~v~ 185 (631)
. .......||++.|+.+||+.|++++++|..|.+.
T Consensus 92 ~-----~~~~~~~IP~v~Is~edg~~L~~~l~~g~~~~~~ 126 (127)
T cd04819 92 T-----EDGPPSPIPAASVSGEDGLRLARVAERNDTLVLR 126 (127)
T ss_pred c-----cCCCCCCCCEEEEeHHHHHHHHHHHhcCCceEee
Confidence 1 1122468999999999999999999999877664
No 23
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.18 E-value=6.4e-11 Score=108.65 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=78.3
Q ss_pred cCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCEEEEEecCcc------CHHHH-------HHHHHHcCCcEE
Q 006787 62 FGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGEC------YFALK-------VWHGQQAGAAAV 128 (631)
Q Consensus 62 FG~~~~~~~i~g~lv~~~~~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~C------sF~~K-------v~nAq~aGA~av 128 (631)
|.....+++++|++++..++ + .+. ++.....+|+||||+||.| +|..| +.+|+++||.|+
T Consensus 8 ~s~~t~~~gvta~vv~v~~~--~--~~~---~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~av 80 (134)
T cd04815 8 GSVATPPEGITAEVVVVKSF--D--ELK---AAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAV 80 (134)
T ss_pred CCCCCCCCCcEEEEEEECCH--H--HHH---hcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEE
Confidence 33334446799999886532 1 222 1211233488999999999 99999 699999999999
Q ss_pred EEEeCCCCC---c--cccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 006787 129 LVADSVDEP---L--ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (631)
Q Consensus 129 II~~~~~~~---~--~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~g~~V~v~l 186 (631)
||+|+.+.. . .+|..+ .....||++.|+.++|+.|.+++++|.+|+++|
T Consensus 81 Iv~s~~~~~~~~~~~G~~~~~---------~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~l 134 (134)
T cd04815 81 LIRSIGTDSHRSPHTGMMSYD---------DGVPKIPAAAISVEDADMLERLAARGKPIRVNL 134 (134)
T ss_pred EEEecCcccCCCCcCCccccC---------CCCCCCCEEEechhcHHHHHHHHhCCCCeEEeC
Confidence 999975332 1 122211 124579999999999999999999999888864
No 24
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.98 E-value=2.5e-09 Score=97.16 Aligned_cols=84 Identities=21% Similarity=0.250 Sum_probs=65.9
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCEEEEEecCcc-CHHHHHHHHHHcCCcEEEEEeCCCCCccccCCCCCCCCcCCcccccC
Q 006787 81 GASGCQPFE-GDKPFKSKFPRPTVLLLDRGEC-YFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIG 158 (631)
Q Consensus 81 ~~~gC~~~~-~~~~~~~~~~~~~i~LV~RG~C-sF~~Kv~nAq~aGA~avII~~~~~~~~~~m~~~~~~~~~~~~~~~i~ 158 (631)
...+|++.. ....++ ++|||++||.| +|.+|+.+|+++||.|+|++++..+.. .+. .....
T Consensus 36 ~~~~C~~~~~~~~~v~-----GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~-~~~-----------~~~~~ 98 (126)
T cd02120 36 DASLCLPGSLDPSKVK-----GKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL-DVV-----------ADAHV 98 (126)
T ss_pred ccccCCCCCCChhhcc-----ccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc-eec-----------ccccc
Confidence 346898765 223344 77999999999 999999999999999999998874432 121 11357
Q ss_pred ccEEEEeHHHHHHHHHHHHcCCE
Q 006787 159 IPSALIDRAFGLSLKEALKKGEE 181 (631)
Q Consensus 159 IP~~~I~~~~G~~l~~~l~~g~~ 181 (631)
||+++|++++|+.|+++++++..
T Consensus 99 iP~v~I~~~~g~~l~~y~~~~~~ 121 (126)
T cd02120 99 LPAVHVDYEDGTAILSYINSTSN 121 (126)
T ss_pred cceEEECHHHHHHHHHHHHcCCC
Confidence 99999999999999999997653
No 25
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.93 E-value=7.2e-09 Score=98.86 Aligned_cols=115 Identities=20% Similarity=0.222 Sum_probs=73.7
Q ss_pred ccCcCCCCCCCceEEEEEecCCCCCCCCCCCCCCCC--CCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCC
Q 006787 59 IGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPF--KSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDE 136 (631)
Q Consensus 59 ~a~FG~~~~~~~i~g~lv~~~~~~~gC~~~~~~~~~--~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~ 136 (631)
...|-.....+.++|.+|++. .| .+.++. .+ .+....++||||+||.|+|.+|+++||++||+|||||+|..+
T Consensus 17 ~~~f~~~s~~G~v~g~lVyvn---~G-~~~Df~-~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d 91 (183)
T cd02128 17 PGGYVAYSAAGTVTGKLVYAN---YG-RKKDFE-DLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPAD 91 (183)
T ss_pred cccccCCCCCCceEEEEEEcC---CC-CHHHHH-HHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHH
Confidence 334554445578999999952 33 222210 00 012334889999999999999999999999999999998421
Q ss_pred C-------------------ccccCCCCCCCC---cCCcccccCccEEEEeHHHHHHHHHHHHc
Q 006787 137 P-------------------LITMDSPEESTD---ANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (631)
Q Consensus 137 ~-------------------~~~m~~~~~~~~---~~~~~~~i~IP~~~I~~~~G~~l~~~l~~ 178 (631)
. ..|++.+..... ..+...-.+||++-||.++++.|++.|.-
T Consensus 92 ~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 92 FPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 1 112222211100 00001234799999999999999999953
No 26
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.83 E-value=5.5e-09 Score=115.27 Aligned_cols=121 Identities=24% Similarity=0.619 Sum_probs=96.1
Q ss_pred cccccccccCCCcccCCCCCceeeCCC-ceeeecCCCCCeeeeCCCccceeecCCCcccCCCCCCCCCCCCCCcccccee
Q 006787 425 TNECLERNGGCWQDTQANITACKDTFR-GRLCECPIVKGVQYRGDGYISCQAYGPARCSINNGGCWSDTKNGLTFSACSE 503 (631)
Q Consensus 425 ~deC~~~~~~C~~~~~~~~~~C~~~~g-~~~C~C~~~~G~~~~gdg~~~C~~i~~~~C~~~~~~C~~~~~~g~~~~~C~~ 503 (631)
++.|....+.|. .+..|....+ .|+|+|.. ++.+|+ +.|.++ ++|+..+..|... +.|+|
T Consensus 692 ~npCy~gsh~cd-----t~a~C~pg~~~~~tcecs~----g~~gdg-r~c~d~--~eca~~~~~CGp~-------s~Cin 752 (1289)
T KOG1214|consen 692 VNPCYDGSHMCD-----TTARCHPGTGVDYTCECSS----GYQGDG-RNCVDE--NECATGFHRCGPN-------SVCIN 752 (1289)
T ss_pred cccceecCcccC-----CCccccCCCCcceEEEEee----ccCCCC-CCCCCh--hhhccCCCCCCCC-------ceeec
Confidence 566766777787 6689987654 59999999 788999 999987 8999999999887 88999
Q ss_pred CC-CceeeCCCCcc--cCCCccc------cCcCccCC-CCCCCCCC--eeeecC-CCeEEecCCCCeecCCCCceee
Q 006787 504 SQ-ITGCHCPKGFR--GDGHKCE------DINECKER-SACQCDGC--SCQNTW-GGFECKCKGNLLFIKEQDACIE 567 (631)
Q Consensus 504 ~~-~~~C~C~~Gy~--g~~~~C~------dideC~~~-~~C~~~~~--~C~nt~-Gsy~C~C~~G~~~~~d~~~C~~ 567 (631)
.+ +|+|+|..||. +++.+|. .++.|.+. +.|. ..+ .|+.+. ++|.|.|.+||. +||..|..
T Consensus 753 ~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~-i~g~a~c~~hGgs~y~C~CLPGfs--GDG~~c~d 826 (1289)
T KOG1214|consen 753 LPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCA-IAGQARCVHHGGSTYSCACLPGFS--GDGHQCTD 826 (1289)
T ss_pred CCCceeEEEeecceeccCCcceEEecCCCCCCccccCccccC-cCCceEEEecCCceEEEeecCCcc--CCcccccc
Confidence 99 99999999987 7778897 45778886 7887 544 455555 569999999995 45555443
No 27
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.69 E-value=1.8e-08 Score=72.99 Aligned_cols=41 Identities=32% Similarity=0.796 Sum_probs=36.3
Q ss_pred cCcCccCC-CCCCCCCCeeeecCCCeEEecCCCCeecCCCCce
Q 006787 524 DINECKER-SACQCDGCSCQNTWGGFECKCKGNLLFIKEQDAC 565 (631)
Q Consensus 524 dideC~~~-~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~d~~~C 565 (631)
|||||... +.|. .++.|+|+.|+|+|.|++||....++..|
T Consensus 1 DidEC~~~~~~C~-~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCP-ENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp ESSTTTTTSSSSS-TTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CccccCCCCCcCC-CCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 79999985 6898 89999999999999999999877666655
No 28
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=98.69 E-value=3.9e-08 Score=113.44 Aligned_cols=87 Identities=34% Similarity=0.698 Sum_probs=63.4
Q ss_pred ccccccccc-cCccccCCCCcccCCccccccccccccCCCcccCCCCCceeeCCCceeeecCCCCCeeeeCCCccceeec
Q 006787 398 RTAVLRAIC-AGFKEATEPQICLTGDLETNECLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDGYISCQAY 476 (631)
Q Consensus 398 ~~~v~~~~C-~Gf~~~~~g~~C~~~~~d~deC~~~~~~C~~~~~~~~~~C~~~~g~~~C~C~~~~G~~~~gdg~~~C~~i 476 (631)
+-+.++|.| +||. +..|+. ++|+|-+++ |. ++++|....|+|+|+|.+ +|.| ++|+-.
T Consensus 1218 pvnglrCrCPpGFT----gd~CeT---eiDlCYs~p--C~-----nng~C~srEggYtCeCrp----g~tG---ehCEvs 1276 (2531)
T KOG4289|consen 1218 PVNGLRCRCPPGFT----GDYCET---EIDLCYSGP--CG-----NNGRCRSREGGYTCECRP----GFTG---EHCEVS 1276 (2531)
T ss_pred ccCceeEeCCCCCC----cccccc---hhHhhhcCC--CC-----CCCceEEecCceeEEecC----Cccc---cceeee
Confidence 335677888 9994 568996 899998877 98 899999999999999999 5554 458742
Q ss_pred -CCCcccCCCCCCCCCCCCCCccccceeCC--CceeeCCCC
Q 006787 477 -GPARCSINNGGCWSDTKNGLTFSACSESQ--ITGCHCPKG 514 (631)
Q Consensus 477 -~~~~C~~~~~~C~~~~~~g~~~~~C~~~~--~~~C~C~~G 514 (631)
....|.. + .|+|| ++|++.. ++.|.|+.|
T Consensus 1277 ~~agrCvp--G----vC~ng---gtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1277 ARAGRCVP--G----VCKNG---GTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred cccCcccc--c----eecCC---CEEeecCCCceeccCCCc
Confidence 1233432 2 25555 6788776 777777765
No 29
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=98.40 E-value=3.4e-07 Score=105.99 Aligned_cols=97 Identities=30% Similarity=0.738 Sum_probs=76.6
Q ss_pred eCCCceeeecCCCCCeeeeCCCccceeecCCCcccCCCCCCCCCCCCCCccccceeCC-CceeeCCCCcccCCCccc-c-
Q 006787 448 DTFRGRLCECPIVKGVQYRGDGYISCQAYGPARCSINNGGCWSDTKNGLTFSACSESQ-ITGCHCPKGFRGDGHKCE-D- 524 (631)
Q Consensus 448 ~~~g~~~C~C~~~~G~~~~gdg~~~C~~i~~~~C~~~~~~C~~~~~~g~~~~~C~~~~-~~~C~C~~Gy~g~~~~C~-d- 524 (631)
+..++++|.||+ +|+||- |+.. +|+|-.++ |.+. ++|.... +|+|.|.+||.|. .|+ +
T Consensus 1217 ~pvnglrCrCPp----GFTgd~---CeTe-iDlCYs~p--C~nn-------g~C~srEggYtCeCrpg~tGe--hCEvs~ 1277 (2531)
T KOG4289|consen 1217 HPVNGLRCRCPP----GFTGDY---CETE-IDLCYSGP--CGNN-------GRCRSREGGYTCECRPGFTGE--HCEVSA 1277 (2531)
T ss_pred cccCceeEeCCC----CCCccc---ccch-hHhhhcCC--CCCC-------CceEEecCceeEEecCCcccc--ceeeec
Confidence 456789999999 778886 9863 69997644 6554 8899988 9999999999998 888 2
Q ss_pred -CcCccCCCCCCCCCCeeeecC-CCeEEecCCCCeecCCCCceeec
Q 006787 525 -INECKERSACQCDGCSCQNTW-GGFECKCKGNLLFIKEQDACIER 568 (631)
Q Consensus 525 -ideC~~~~~C~~~~~~C~nt~-Gsy~C~C~~G~~~~~d~~~C~~~ 568 (631)
--.|.++ .|. ++++|+|.. |+|.|.|+.| ...+..|.-.
T Consensus 1278 ~agrCvpG-vC~-nggtC~~~~nggf~c~Cp~g---e~e~prC~v~ 1318 (2531)
T KOG4289|consen 1278 RAGRCVPG-VCK-NGGTCVNLLNGGFCCHCPYG---EFEDPRCEVT 1318 (2531)
T ss_pred ccCccccc-eec-CCCEEeecCCCceeccCCCc---ccCCCceEEE
Confidence 2347775 899 999999976 8899999998 2345567653
No 30
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.38 E-value=1.7e-06 Score=85.43 Aligned_cols=125 Identities=21% Similarity=0.230 Sum_probs=79.3
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCCCC--CCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCCCc--------
Q 006787 69 GFMVGSVIYPDKGASGCQPFEGDKPFK--SKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL-------- 138 (631)
Q Consensus 69 ~~i~g~lv~~~~~~~gC~~~~~~~~~~--~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~~~-------- 138 (631)
+.++|.+||+. .|..-+. ..+. +-...++||||++|.+.+.+|+++|+++||+|||||++..+.-
T Consensus 43 g~v~g~lVyvn----yG~~~D~-~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~ 117 (220)
T cd02121 43 GNVTAELVYAN----YGSPEDF-EYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENGK 117 (220)
T ss_pred CCceEEEEEcC----CCcHHHH-HHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhcccccccccc
Confidence 56899999953 3433221 0111 2234488999999999999999999999999999999752210
Q ss_pred ------------ccc-------CCCCCC-CC------cC------CcccccCccEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 006787 139 ------------ITM-------DSPEES-TD------AN------GYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (631)
Q Consensus 139 ------------~~m-------~~~~~~-~~------~~------~~~~~i~IP~~~I~~~~G~~l~~~l~~g~~V~v~l 186 (631)
+.. ..++|. +. .. ....-.+||++=||..+++.|++.|.... +--
T Consensus 118 ~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~~---~p~ 194 (220)
T cd02121 118 TYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGGPG---APS 194 (220)
T ss_pred cCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCCCC---CCc
Confidence 000 011110 00 00 11122479999999999999999997433 455
Q ss_pred EecCCCCCCCCceeEEeecc
Q 006787 187 DWTESMPHPDQRVEYELWTN 206 (631)
Q Consensus 187 ~~~~~~p~~~~~v~~~~w~~ 206 (631)
+|+..+ .+.|.+|..
T Consensus 195 ~W~g~l-----~~~y~~g~~ 209 (220)
T cd02121 195 DWQGGL-----PVTYRLGFG 209 (220)
T ss_pred cccCCC-----CCceeeCCC
Confidence 675433 467777633
No 31
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=98.38 E-value=4.3e-07 Score=108.85 Aligned_cols=103 Identities=24% Similarity=0.585 Sum_probs=81.1
Q ss_pred eeeccccCCcc---cccccccccc-cCccccCCCCcccCCccccccccccccCCCcccCCCCCceeeCCCceeeecCCCC
Q 006787 386 VINDVQYRGKL---ERTAVLRAIC-AGFKEATEPQICLTGDLETNECLERNGGCWQDTQANITACKDTFRGRLCECPIVK 461 (631)
Q Consensus 386 ~iN~~~y~G~l---~~~~v~~~~C-~Gf~~~~~g~~C~~~~~d~deC~~~~~~C~~~~~~~~~~C~~~~g~~~C~C~~~~ 461 (631)
+-.++|..|.. .+.+.+.|.| +-| .|.+|+- +++.|..+| |. .+++|....++|.|.|+.
T Consensus 3867 C~~npCqhgG~C~~~~~ggy~CkCpsqy----sG~~CEi---~~epC~snP--C~-----~GgtCip~~n~f~CnC~~-- 3930 (4289)
T KOG1219|consen 3867 CNDNPCQHGGTCISQPKGGYKCKCPSQY----SGNHCEI---DLEPCASNP--CL-----TGGTCIPFYNGFLCNCPN-- 3930 (4289)
T ss_pred cccCcccCCCEecCCCCCceEEeCcccc----cCccccc---ccccccCCC--CC-----CCCEEEecCCCeeEeCCC--
Confidence 44555555543 2356777888 666 5688994 788999888 98 789999999999999999
Q ss_pred CeeeeCCCccceeecCCCcccCCCCCCCCCCCCCCccccceeCC-CceeeCCCCcccC
Q 006787 462 GVQYRGDGYISCQAYGPARCSINNGGCWSDTKNGLTFSACSESQ-ITGCHCPKGFRGD 518 (631)
Q Consensus 462 G~~~~gdg~~~C~~i~~~~C~~~~~~C~~~~~~g~~~~~C~~~~-~~~C~C~~Gy~g~ 518 (631)
+|+|+. |+..++++|+-+. |.+. +.|.|.. +|.|.|.+||.|.
T Consensus 3931 --gyTG~~---Ce~~Gi~eCs~n~--C~~g-------g~C~n~~gsf~CncT~g~~gr 3974 (4289)
T KOG1219|consen 3931 --GYTGKR---CEARGISECSKNV--CGTG-------GQCINIPGSFHCNCTPGILGR 3974 (4289)
T ss_pred --CccCce---eeccccccccccc--ccCC-------ceeeccCCceEeccChhHhcc
Confidence 667665 9986678998543 5444 8899999 9999999999986
No 32
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=6.7e-07 Score=87.86 Aligned_cols=104 Identities=28% Similarity=0.607 Sum_probs=67.8
Q ss_pred CCCceee---CCCceeeecCCCCCeeeeCCCccceeecCCCcccC---CC----CCCCCCCCCCCccccceeCCCceee-
Q 006787 442 NITACKD---TFRGRLCECPIVKGVQYRGDGYISCQAYGPARCSI---NN----GGCWSDTKNGLTFSACSESQITGCH- 510 (631)
Q Consensus 442 ~~~~C~~---~~g~~~C~C~~~~G~~~~gdg~~~C~~i~~~~C~~---~~----~~C~~~~~~g~~~~~C~~~~~~~C~- 510 (631)
.++.|.. ..|+-.|.|.. +|.|.. |.+-++..-.. .. ..|+..|. ..|.......|.
T Consensus 154 GnG~C~GdGsR~GsGkCkC~~----GY~Gp~---C~~Cg~eyfes~Rne~~lvCt~Ch~~C~-----~~Csg~~~k~C~k 221 (350)
T KOG4260|consen 154 GNGSCHGDGSREGSGKCKCET----GYTGPL---CRYCGIEYFESSRNEQHLVCTACHEGCL-----GVCSGESSKGCSK 221 (350)
T ss_pred CCCcccCCCCCCCCCcccccC----CCCCcc---ccccchHHHHhhcccccchhhhhhhhhh-----cccCCCCCCChhh
Confidence 4455652 25667899999 555655 43311110000 00 12444432 124433344554
Q ss_pred CCCCcccCCCccccCcCccCC-CCCCCCCCeeeecCCCeEEecCCCCee
Q 006787 511 CPKGFRGDGHKCEDINECKER-SACQCDGCSCQNTWGGFECKCKGNLLF 558 (631)
Q Consensus 511 C~~Gy~g~~~~C~dideC~~~-~~C~~~~~~C~nt~Gsy~C~C~~G~~~ 558 (631)
|..|+.-+...|.|||||... .+|. ..+.|+|+.|||.|.+.+||..
T Consensus 222 CkkGW~lde~gCvDvnEC~~ep~~c~-~~qfCvNteGSf~C~dk~Gy~~ 269 (350)
T KOG4260|consen 222 CKKGWKLDEEGCVDVNECQNEPAPCK-AHQFCVNTEGSFKCEDKEGYKK 269 (350)
T ss_pred hcccceecccccccHHHHhcCCCCCC-hhheeecCCCceEecccccccC
Confidence 999999887899999999874 6898 8899999999999999999954
No 33
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.21 E-value=1.5e-06 Score=62.89 Aligned_cols=39 Identities=31% Similarity=0.652 Sum_probs=34.3
Q ss_pred ccccccccccCCCcccCCCCCceeeCCCceeeecCCCCCeeeeCCC
Q 006787 424 ETNECLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDG 469 (631)
Q Consensus 424 d~deC~~~~~~C~~~~~~~~~~C~~~~g~~~C~C~~~~G~~~~gdg 469 (631)
|+|||...++.|. .++.|+|+.|+|.|.|++ ||.+..++
T Consensus 1 DidEC~~~~~~C~-----~~~~C~N~~Gsy~C~C~~--Gy~~~~~~ 39 (42)
T PF07645_consen 1 DIDECAEGPHNCP-----ENGTCVNTEGSYSCSCPP--GYELNDDG 39 (42)
T ss_dssp ESSTTTTTSSSSS-----TTSEEEEETTEEEEEEST--TEEECTTS
T ss_pred CccccCCCCCcCC-----CCCEEEcCCCCEEeeCCC--CcEECCCC
Confidence 5899999888898 779999999999999999 88865555
No 34
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.20 E-value=1.7e-05 Score=73.78 Aligned_cols=97 Identities=18% Similarity=0.110 Sum_probs=64.6
Q ss_pred CceEEEEEecCC--CCCCCCCCCCCCCCCCCCCCCEEEEEecCc------------------cCHHHHHHHHHHcCCcEE
Q 006787 69 GFMVGSVIYPDK--GASGCQPFEGDKPFKSKFPRPTVLLLDRGE------------------CYFALKVWHGQQAGAAAV 128 (631)
Q Consensus 69 ~~i~g~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~------------------CsF~~Kv~nAq~aGA~av 128 (631)
+.++|.||++.. ...+|...+ |.+-...++||||.||. |+|..|+++|+++||+||
T Consensus 18 g~vtg~lVfvGyGi~~~~~~~~D----y~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aV 93 (151)
T cd04822 18 GAVTAPVVFAGYGITAPELGYDD----YAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAV 93 (151)
T ss_pred CCceEeEEEecCCcCccccchhh----ccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEE
Confidence 678999998642 235565443 33334448899999984 999999999999999999
Q ss_pred EEEeCCCCCccccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHc
Q 006787 129 LVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (631)
Q Consensus 129 II~~~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~ 178 (631)
|||++..+..-.-..+. .. ... .++.|+....+.|..++..
T Consensus 94 Iv~~d~~~~~~~~~~~~----~~----~~~-~~~~~~~~~~~~~~~~~~~ 134 (151)
T cd04822 94 IVVNGPNSHSGDADRLP----RF----GGT-APQRVDIAAADPWFTAAEA 134 (151)
T ss_pred EEEeCCcccCccccccc----cc----Ccc-ceEEechHHHHHHhhhhhh
Confidence 99998744321000000 00 011 1788888888888876443
No 35
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=98.14 E-value=1.8e-06 Score=80.96 Aligned_cols=149 Identities=24% Similarity=0.524 Sum_probs=92.7
Q ss_pred eeccccCCcc-cccccccccc-cCccccCCCCcccCCcccccccccc-c--cCCCcccCCCCCceeeCC-----Cceeee
Q 006787 387 INDVQYRGKL-ERTAVLRAIC-AGFKEATEPQICLTGDLETNECLER-N--GGCWQDTQANITACKDTF-----RGRLCE 456 (631)
Q Consensus 387 iN~~~y~G~l-~~~~v~~~~C-~Gf~~~~~g~~C~~~~~d~deC~~~-~--~~C~~~~~~~~~~C~~~~-----g~~~C~ 456 (631)
++..|..|.| .....|++.| .||... .-..|+ +..+|... + -.|. ..+.|.+.. ..|.|.
T Consensus 4 vdT~CKNG~LiQMSNHfEC~Cnegfvl~-~EntCE----~kv~C~~~e~~~K~Cg-----dya~C~~~~~~~~~~~~~C~ 73 (197)
T PF06247_consen 4 VDTICKNGYLIQMSNHFECKCNEGFVLK-NENTCE----EKVECDKLENVNKPCG-----DYAKCINQANKGEERAYKCD 73 (197)
T ss_dssp TT---BTEEEEEESSEEEEEESTTEEEE-ETTEEE----E----SG-GGTTSEEE-----TTEEEEE-SSTTSSTSEEEE
T ss_pred ccccccCCEEEEccCceEEEcCCCcEEc-cccccc----cceecCcccccCcccc-----chhhhhcCCCcccceeEEEe
Confidence 4666777777 5578999999 999875 456788 46788752 1 2377 779999875 469999
Q ss_pred cCCCCCeeeeCCCccceeecCCCcccCCCCCCCCCCCCCCccccceeCC----CceeeCCCCcc-cCCCccc--cCcCcc
Q 006787 457 CPIVKGVQYRGDGYISCQAYGPARCSINNGGCWSDTKNGLTFSACSESQ----ITGCHCPKGFR-GDGHKCE--DINECK 529 (631)
Q Consensus 457 C~~~~G~~~~gdg~~~C~~i~~~~C~~~~~~C~~~~~~g~~~~~C~~~~----~~~C~C~~Gy~-g~~~~C~--dideC~ 529 (631)
|.+ ||.+..+- |.. ++|.. ..|.. +.|+-.+ ...|+|.-|+. .+...|+ .-.+|+
T Consensus 74 C~~--gY~~~~~v---Cvp---~~C~~--~~Cg~--------GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~T~C~ 135 (197)
T PF06247_consen 74 CIN--GYILKQGV---CVP---NKCNN--KDCGS--------GKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGETKCS 135 (197)
T ss_dssp E-T--TEEESSSS---EEE---GGGSS-----TT--------EEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE-----
T ss_pred ccc--CceeeCCe---Ech---hhcCc--eecCC--------CeEEecCCCCCCceeEeeeceEeccCCcccCCCcccee
Confidence 999 99887665 875 67764 34543 5687544 55999999998 5556776 234576
Q ss_pred CCCCCCCCCCeeeecCCCeEEecCCCCeecCCCCcee
Q 006787 530 ERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDACI 566 (631)
Q Consensus 530 ~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~d~~~C~ 566 (631)
. .|. .+..|..+.+-|+|.|.+|+.....+..+.
T Consensus 136 L--KCk-~nE~CK~~~~~Y~C~~~~~~~~~~~~~~~~ 169 (197)
T PF06247_consen 136 L--KCK-ENEECKLVDGYYKCVCKEGFPGDGEGEGCG 169 (197)
T ss_dssp -----T-TTEEEEEETTEEEEEE-TT-EEETTT----
T ss_pred e--ecC-CCcceeeeCcEEEeecCCCCCCCCCccccc
Confidence 6 476 788999999999999999998887776553
No 36
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=2.9e-06 Score=83.51 Aligned_cols=145 Identities=23% Similarity=0.568 Sum_probs=93.8
Q ss_pred eccccCCcccccccccccc-cCccccCCCCcccCCcccccc---------ccccccCCCcccCCCCCceeeCCCceee-e
Q 006787 388 NDVQYRGKLERTAVLRAIC-AGFKEATEPQICLTGDLETNE---------CLERNGGCWQDTQANITACKDTFRGRLC-E 456 (631)
Q Consensus 388 N~~~y~G~l~~~~v~~~~C-~Gf~~~~~g~~C~~~~~d~de---------C~~~~~~C~~~~~~~~~~C~~~~g~~~C-~ 456 (631)
|+.|. |+-++.+..++.| .||. |..|..-+++.-| |..=..+|. ..|.. .++..| .
T Consensus 155 nG~C~-GdGsR~GsGkCkC~~GY~----Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~-------~~Csg-~~~k~C~k 221 (350)
T KOG4260|consen 155 NGSCH-GDGSREGSGKCKCETGYT----GPLCRYCGIEYFESSRNEQHLVCTACHEGCL-------GVCSG-ESSKGCSK 221 (350)
T ss_pred CCccc-CCCCCCCCCcccccCCCC----CccccccchHHHHhhcccccchhhhhhhhhh-------cccCC-CCCCChhh
Confidence 44433 5555666777888 8885 4556532211111 111011132 34432 334456 6
Q ss_pred cCCCCCeeeeCCCccceeecCCCcccCCCCCCCCCCCCCCccccceeCC-CceeeCCCCcccCCCccccCcCccCC-CCC
Q 006787 457 CPIVKGVQYRGDGYISCQAYGPARCSINNGGCWSDTKNGLTFSACSESQ-ITGCHCPKGFRGDGHKCEDINECKER-SAC 534 (631)
Q Consensus 457 C~~~~G~~~~gdg~~~C~~i~~~~C~~~~~~C~~~~~~g~~~~~C~~~~-~~~C~C~~Gy~g~~~~C~dideC~~~-~~C 534 (631)
|.. |+.+..-+ |.|+ |||...+.+|... ..|+|+. +|.|.+.+||.+. +|||..- ..|
T Consensus 222 Ckk--GW~lde~g---CvDv--nEC~~ep~~c~~~-------qfCvNteGSf~C~dk~Gy~~g------~d~C~~~~d~~ 281 (350)
T KOG4260|consen 222 CKK--GWKLDEEG---CVDV--NECQNEPAPCKAH-------QFCVNTEGSFKCEDKEGYKKG------VDECQFCADVC 281 (350)
T ss_pred hcc--cceecccc---cccH--HHHhcCCCCCChh-------heeecCCCceEecccccccCC------hHHhhhhhhhc
Confidence 888 76666555 9998 9999988888776 6799999 9999999999863 5666541 255
Q ss_pred CCCCCeeeecCCCeEEecCCCCeecCCCCceee
Q 006787 535 QCDGCSCQNTWGGFECKCKGNLLFIKEQDACIE 567 (631)
Q Consensus 535 ~~~~~~C~nt~Gsy~C~C~~G~~~~~d~~~C~~ 567 (631)
...+..|.|+.|+|+|.|..|+... ...|..
T Consensus 282 ~~kn~~c~ni~~~~r~v~f~~~~~~--~g~cV~ 312 (350)
T KOG4260|consen 282 ASKNRPCMNIDGQYRCVCFSGLIII--EGFCVW 312 (350)
T ss_pred ccCCCCcccCCccEEEEecccceee--eeeeec
Confidence 5456889999999999999998533 233554
No 37
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.03 E-value=1.8e-05 Score=72.85 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=48.2
Q ss_pred CceEEEEEecCCC--CCCCCCCCCCCCCCCCCCCCEEEEEecCcc------------------CHHHHHHHHHHcCCcEE
Q 006787 69 GFMVGSVIYPDKG--ASGCQPFEGDKPFKSKFPRPTVLLLDRGEC------------------YFALKVWHGQQAGAAAV 128 (631)
Q Consensus 69 ~~i~g~lv~~~~~--~~gC~~~~~~~~~~~~~~~~~i~LV~RG~C------------------sF~~Kv~nAq~aGA~av 128 (631)
..+.+.+|++... ..+|..-+ |.+...+++||||.||.| +|..|+++|+++||+||
T Consensus 18 ~~~~aelVfvGyGi~a~~~~~dD----Yag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gv 93 (142)
T cd04814 18 AIKDAPLVFVGYGIKAPELSWDD----YAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGV 93 (142)
T ss_pred cccceeeEEecCCcCCCCCChhh----cCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEE
Confidence 4678888886432 24555433 444445588999999999 79999999999999999
Q ss_pred EEEeCCC
Q 006787 129 LVADSVD 135 (631)
Q Consensus 129 II~~~~~ 135 (631)
||+++.+
T Consensus 94 Iii~~~~ 100 (142)
T cd04814 94 LIVHELA 100 (142)
T ss_pred EEEeCCC
Confidence 9999864
No 38
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=98.00 E-value=1.8e-05 Score=87.48 Aligned_cols=141 Identities=27% Similarity=0.633 Sum_probs=95.9
Q ss_pred ccccccc-cCccccCCCCcccCCccccccccccccCCCcccCCCCCceeeCCCceeeecCCCCCeeeeCCCc----ccee
Q 006787 400 AVLRAIC-AGFKEATEPQICLTGDLETNECLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDGY----ISCQ 474 (631)
Q Consensus 400 ~v~~~~C-~Gf~~~~~g~~C~~~~~d~deC~~~~~~C~~~~~~~~~~C~~~~g~~~C~C~~~~G~~~~gdg~----~~C~ 474 (631)
..+.+.| .||.. ..|.. ..++|......|. +...|.+..++|.|.|++ ||....... ..|.
T Consensus 150 ~~~~c~C~~g~~~----~~~~~---~~~~C~~~~~~c~-----~~~~C~~~~~~~~C~c~~--~~~~~~~~~~~~~~~c~ 215 (487)
T KOG1217|consen 150 GPFRCSCTEGYEG----EPCET---DLDECIQYSSPCQ-----NGGTCVNTGGSYLCSCPP--GYTGSTCETTGNGGTCV 215 (487)
T ss_pred CceeeeeCCCccc----ccccc---cccccccCCCCcC-----CCcccccCCCCeeEeCCC--CccCCcCcCCCCCceEe
Confidence 3566677 88843 45553 2368886666688 779999999999999999 554322220 1232
Q ss_pred ec-----C----CCcccCCCCCCCCCCCCCCccccceeCC-CceeeCCCCcccCC-CccccCcCccCCCCCCCCCCeeee
Q 006787 475 AY-----G----PARCSINNGGCWSDTKNGLTFSACSESQ-ITGCHCPKGFRGDG-HKCEDINECKERSACQCDGCSCQN 543 (631)
Q Consensus 475 ~i-----~----~~~C~~~~~~C~~~~~~g~~~~~C~~~~-~~~C~C~~Gy~g~~-~~C~dideC~~~~~C~~~~~~C~n 543 (631)
+. . ...|......|.. + . +.|.+.. +|.|.|++||.+.. ..|.++++|....+|. ++++|.+
T Consensus 216 ~~~~~~~~~g~~~~~c~~~~~~~~~----~-~-~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~-~~~~C~~ 288 (487)
T KOG1217|consen 216 DSVACSCPPGARGPECEVSIVECAS----G-D-GTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCP-NGGTCVN 288 (487)
T ss_pred cceeccCCCCCCCCCcccccccccC----C-C-CcccccCCceeeeCCCCccccccceeeeccccCCCCccC-CCCeeec
Confidence 21 0 0112111111111 0 1 4688888 99999999999987 5789999999962388 7899999
Q ss_pred cCCCeEEecCCCCeecCC
Q 006787 544 TWGGFECKCKGNLLFIKE 561 (631)
Q Consensus 544 t~Gsy~C~C~~G~~~~~d 561 (631)
..++|.|.|++||.....
T Consensus 289 ~~~~~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 289 VPGSYRCTCPPGFTGRLC 306 (487)
T ss_pred CCCcceeeCCCCCCCCCC
Confidence 999999999999976554
No 39
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.99 E-value=1.8e-05 Score=72.66 Aligned_cols=103 Identities=15% Similarity=0.078 Sum_probs=66.5
Q ss_pred CCCceEEEEEecCCCCCCC-CCCC---CCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCCCc----
Q 006787 67 YGGFMVGSVIYPDKGASGC-QPFE---GDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL---- 138 (631)
Q Consensus 67 ~~~~i~g~lv~~~~~~~gC-~~~~---~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~~~---- 138 (631)
..++++|++||+.- |= +.+. ...+++ ++|||++.|.-++..||+|||++||.|||||.|..+.-
T Consensus 11 ~sG~Vtg~~VYvNy---G~~eDf~~L~~~V~v~-----GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~ 82 (153)
T cd02131 11 AKGTLQAEVVDVQY---GSVEDLRRIRDNMNVT-----NQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRH 82 (153)
T ss_pred CCCceEEEEEEecC---CCHHHHHHHHhCCCcc-----ceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCC
Confidence 35789999999531 11 0111 112233 88999999999999999999999999999998852221
Q ss_pred -----cc-cCC-CCCC-CC------cC---CcccccCccEEEEeHHHHHHHHHHHH
Q 006787 139 -----IT-MDS-PEES-TD------AN---GYVEKIGIPSALIDRAFGLSLKEALK 177 (631)
Q Consensus 139 -----~~-m~~-~~~~-~~------~~---~~~~~i~IP~~~I~~~~G~~l~~~l~ 177 (631)
.. +.. ++|. |. +. ....-.+||+.=|+..|+..|+++-.
T Consensus 83 ~~~~v~~v~~~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~~ 138 (153)
T cd02131 83 TWHQAFMVSLNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPP 138 (153)
T ss_pred CccceEEEecCCCCCCCCCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCCc
Confidence 00 111 1111 10 00 11123579999999999999987654
No 40
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.95 E-value=8.6e-06 Score=56.45 Aligned_cols=31 Identities=26% Similarity=0.735 Sum_probs=27.3
Q ss_pred CCCCCCCCeeeecCCCeEEecCCCCeecCCCCce
Q 006787 532 SACQCDGCSCQNTWGGFECKCKGNLLFIKEQDAC 565 (631)
Q Consensus 532 ~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~d~~~C 565 (631)
+.|. +.|+|++|+|+|.|++||.+..|+++|
T Consensus 6 GgC~---h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 6 GGCS---HICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp GGSS---SEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCcC---CCCccCCCceEeECCCCCEECcCCCCC
Confidence 5788 999999999999999999999999987
No 41
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.89 E-value=4e-05 Score=70.10 Aligned_cols=64 Identities=9% Similarity=0.055 Sum_probs=48.4
Q ss_pred CCceEEEEEecCC--CCCCCCCCCCCCCCCCCCCCCEEEEEecCccC------------HHHHHHHHHHcCCcEEEEEeC
Q 006787 68 GGFMVGSVIYPDK--GASGCQPFEGDKPFKSKFPRPTVLLLDRGECY------------FALKVWHGQQAGAAAVLVADS 133 (631)
Q Consensus 68 ~~~i~g~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~i~LV~RG~Cs------------F~~Kv~nAq~aGA~avII~~~ 133 (631)
.+.++|.||++.. ...+|..-+ |.+...+++||||+||.|. |..|+++|+++||+||||+++
T Consensus 19 ~g~v~gelVfvGyG~~~~~~~~~D----y~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 19 AASVEAPLVFVGYGLVAPELGHDD----YAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred CCCceEeEEEecCCcCccCcCHhh----ccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 3578999998642 234555433 3333444889999999995 889999999999999999997
Q ss_pred CC
Q 006787 134 VD 135 (631)
Q Consensus 134 ~~ 135 (631)
..
T Consensus 95 ~~ 96 (137)
T cd04820 95 PR 96 (137)
T ss_pred Cc
Confidence 63
No 42
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.78 E-value=2.5e-05 Score=54.13 Aligned_cols=36 Identities=39% Similarity=0.867 Sum_probs=30.3
Q ss_pred ccccccCCCcccCCCCCceeeCCCceeeecCCCCCeeeeCCCccce
Q 006787 428 CLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDGYISC 473 (631)
Q Consensus 428 C~~~~~~C~~~~~~~~~~C~~~~g~~~C~C~~~~G~~~~gdg~~~C 473 (631)
|..++++|+ +.|++++++|+|.|++ ||.+..|+ ++|
T Consensus 1 C~~~NGgC~-------h~C~~~~g~~~C~C~~--Gy~L~~D~-~tC 36 (36)
T PF14670_consen 1 CSVNNGGCS-------HICVNTPGSYRCSCPP--GYKLAEDG-RTC 36 (36)
T ss_dssp CTTGGGGSS-------SEEEEETTSEEEE-ST--TEEE-TTS-SSE
T ss_pred CCCCCCCcC-------CCCccCCCceEeECCC--CCEECcCC-CCC
Confidence 556788899 9999999999999999 99999998 666
No 43
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.64 E-value=6e-05 Score=53.07 Aligned_cols=38 Identities=37% Similarity=0.950 Sum_probs=31.5
Q ss_pred cCcCccCCCCCCCCCCeeeecCCCeEEecCCCCeecCCCCce
Q 006787 524 DINECKERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDAC 565 (631)
Q Consensus 524 dideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~d~~~C 565 (631)
|+|||....+|. ++++|+|+.|+|.|.|++||. ++..|
T Consensus 1 d~~~C~~~~~C~-~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 1 DIDECASGNPCQ-NGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred CcccCcCCCCcC-CCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 578998733898 778999999999999999996 45555
No 44
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.61 E-value=3.5e-05 Score=48.11 Aligned_cols=22 Identities=50% Similarity=1.183 Sum_probs=19.8
Q ss_pred CceeeCCCCcc--cCCCccccCcC
Q 006787 506 ITGCHCPKGFR--GDGHKCEDINE 527 (631)
Q Consensus 506 ~~~C~C~~Gy~--g~~~~C~dide 527 (631)
+|.|.|++||+ .+++.|+||||
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 68999999999 56789999998
No 45
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.55 E-value=6.3e-05 Score=52.26 Aligned_cols=35 Identities=31% Similarity=0.781 Sum_probs=25.8
Q ss_pred ccCC-CCCCCCCCeeeecCCCeEEecCCCCeecCCCCce
Q 006787 528 CKER-SACQCDGCSCQNTWGGFECKCKGNLLFIKEQDAC 565 (631)
Q Consensus 528 C~~~-~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~d~~~C 565 (631)
|..+ +.|+ ++++|.|+.++|.|.|++||. +||..|
T Consensus 1 C~~~~~~C~-~nA~C~~~~~~~~C~C~~Gy~--GdG~~C 36 (36)
T PF12947_consen 1 CLENNGGCH-PNATCTNTGGSYTCTCKPGYE--GDGFFC 36 (36)
T ss_dssp TTTGGGGS--TTCEEEE-TTSEEEEE-CEEE--CCSTCE
T ss_pred CCCCCCCCC-CCcEeecCCCCEEeECCCCCc--cCCcCC
Confidence 4443 6899 899999999999999999994 566655
No 46
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=97.54 E-value=0.00028 Score=78.04 Aligned_cols=138 Identities=28% Similarity=0.635 Sum_probs=94.6
Q ss_pred ccccc-cCccccCCCCcccCCccccccccccccCCCcccCCCCCceeeCCCceeeecCCCCCeeeeCCCccceeecCCCc
Q 006787 402 LRAIC-AGFKEATEPQICLTGDLETNECLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDGYISCQAYGPAR 480 (631)
Q Consensus 402 ~~~~C-~Gf~~~~~g~~C~~~~~d~deC~~~~~~C~~~~~~~~~~C~~~~g~~~C~C~~~~G~~~~gdg~~~C~~i~~~~ 480 (631)
+.+.| .||.... ...|. ++++|..... |. +++.|.+..+.|.|.|++ +|.+.....|.+. ++
T Consensus 252 ~~C~~~~g~~~~~-~~~~~----~~~~C~~~~~-c~-----~~~~C~~~~~~~~C~C~~----g~~g~~~~~~~~~--~~ 314 (487)
T KOG1217|consen 252 YTCRCPEGYTGDA-CVTCV----DVDSCALIAS-CP-----NGGTCVNVPGSYRCTCPP----GFTGRLCTECVDV--DE 314 (487)
T ss_pred eeeeCCCCccccc-cceee----eccccCCCCc-cC-----CCCeeecCCCcceeeCCC----CCCCCCCcccccc--cc
Confidence 55566 6775421 02455 5889988765 87 679999999999999999 5555541123333 66
Q ss_pred ccC--CCCCCCCCCCCCCccccce--eCC-CceeeCCCCcccCCCccccCc-CccCCCCCCCCCCeeee-cCCCeEEecC
Q 006787 481 CSI--NNGGCWSDTKNGLTFSACS--ESQ-ITGCHCPKGFRGDGHKCEDIN-ECKERSACQCDGCSCQN-TWGGFECKCK 553 (631)
Q Consensus 481 C~~--~~~~C~~~~~~g~~~~~C~--~~~-~~~C~C~~Gy~g~~~~C~did-eC~~~~~C~~~~~~C~n-t~Gsy~C~C~ 553 (631)
|.. ....|... ..|. +.. .+.|.|..||.|. .|++.+ +|... +|. .++.|.+ +.++|.|.|+
T Consensus 315 C~~~~~~~~c~~g-------~~C~~~~~~~~~~C~c~~~~~g~--~C~~~~~~C~~~-~~~-~~~~c~~~~~~~~~c~~~ 383 (487)
T KOG1217|consen 315 CSPRNAGGPCANG-------GTCNTLGSFGGFRCACGPGFTGR--RCEDSNDECASS-PCC-PGGTCVNETPGSYRCACP 383 (487)
T ss_pred ccccccCCcCCCC-------cccccCCCCCCCCcCCCCCCCCC--ccccCCccccCC-ccc-cCCEeccCCCCCeEecCC
Confidence 753 22334443 4562 222 7889999996655 899884 99986 677 7899999 7999999999
Q ss_pred CCCeec--CCCCceee
Q 006787 554 GNLLFI--KEQDACIE 567 (631)
Q Consensus 554 ~G~~~~--~d~~~C~~ 567 (631)
.+|.+. .++..|..
T Consensus 384 ~~~~~~~~~~~~~~~~ 399 (487)
T KOG1217|consen 384 AGFAGKANGDGVGCED 399 (487)
T ss_pred CccccCCccccccccc
Confidence 998753 44454544
No 47
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.34 E-value=0.00024 Score=49.34 Aligned_cols=36 Identities=44% Similarity=0.985 Sum_probs=27.9
Q ss_pred ccccccCCCcccCCCCCceeeCCCceeeecCCCCCeeeeCCCccce
Q 006787 428 CLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDGYISC 473 (631)
Q Consensus 428 C~~~~~~C~~~~~~~~~~C~~~~g~~~C~C~~~~G~~~~gdg~~~C 473 (631)
|..++++|. .++.|.++.++|.|.|++ +|.||| ..|
T Consensus 1 C~~~~~~C~-----~nA~C~~~~~~~~C~C~~----Gy~GdG-~~C 36 (36)
T PF12947_consen 1 CLENNGGCH-----PNATCTNTGGSYTCTCKP----GYEGDG-FFC 36 (36)
T ss_dssp TTTGGGGS------TTCEEEE-TTSEEEEE-C----EEECCS-TCE
T ss_pred CCCCCCCCC-----CCcEeecCCCCEEeECCC----CCccCC-cCC
Confidence 556778898 779999999999999999 888998 444
No 48
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.14 E-value=0.00025 Score=44.32 Aligned_cols=24 Identities=38% Similarity=0.768 Sum_probs=21.7
Q ss_pred ceeeecCCCCCeeeeCCCccceeecCCCc
Q 006787 452 GRLCECPIVKGVQYRGDGYISCQAYGPAR 480 (631)
Q Consensus 452 ~~~C~C~~~~G~~~~gdg~~~C~~i~~~~ 480 (631)
||+|.|++ ||.+..++ ++|+|| ||
T Consensus 1 sy~C~C~~--Gy~l~~d~-~~C~DI--dE 24 (24)
T PF12662_consen 1 SYTCSCPP--GYQLSPDG-RSCEDI--DE 24 (24)
T ss_pred CEEeeCCC--CCcCCCCC-CccccC--CC
Confidence 69999999 99999999 999998 64
No 49
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.76 E-value=0.0011 Score=66.42 Aligned_cols=41 Identities=22% Similarity=0.568 Sum_probs=35.3
Q ss_pred CccccCcCccCC-CCCCCCCCeeeecCCCeEEecCCCCeecCCCC
Q 006787 520 HKCEDINECKER-SACQCDGCSCQNTWGGFECKCKGNLLFIKEQD 563 (631)
Q Consensus 520 ~~C~dideC~~~-~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~d~~ 563 (631)
..|.+++||... +.|. +.|.|+.|+|.|.|++||++..++.
T Consensus 182 ~~C~~~~~C~~~~~~c~---~~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 182 KICVVPDLCATLSHVCQ---QVCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred ccCcCchhhcCCCCCcc---ceEEcCCCCEEeECCCCccCCCCCC
Confidence 378889999874 5788 7999999999999999998877765
No 50
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=96.66 E-value=0.0013 Score=44.47 Aligned_cols=29 Identities=31% Similarity=0.856 Sum_probs=25.0
Q ss_pred ccCCCCCCCCCCeeeecC-CCeEEecCCCCee
Q 006787 528 CKERSACQCDGCSCQNTW-GGFECKCKGNLLF 558 (631)
Q Consensus 528 C~~~~~C~~~~~~C~nt~-Gsy~C~C~~G~~~ 558 (631)
|.++ +|. ++++|++.. ++|.|.|++||..
T Consensus 1 C~~~-~C~-n~g~C~~~~~~~y~C~C~~G~~G 30 (32)
T PF00008_consen 1 CSSN-PCQ-NGGTCIDLPGGGYTCECPPGYTG 30 (32)
T ss_dssp TTTT-SST-TTEEEEEESTSEEEEEEBTTEES
T ss_pred CCCC-cCC-CCeEEEeCCCCCEEeECCCCCcc
Confidence 4444 899 899999999 9999999999964
No 51
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=96.53 E-value=0.0027 Score=43.90 Aligned_cols=34 Identities=38% Similarity=0.877 Sum_probs=28.4
Q ss_pred cCcCccCCCCCCCCCCeeeecCCCeEEecCCCCee
Q 006787 524 DINECKERSACQCDGCSCQNTWGGFECKCKGNLLF 558 (631)
Q Consensus 524 dideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~ 558 (631)
++|+|....+|. +++.|.++.++|.|.|++||.+
T Consensus 1 ~~~~C~~~~~C~-~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 1 DIDECASGNPCQ-NGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred CcccCCCCCCcC-CCCEeECCCCCeEeECCCCCcC
Confidence 468888623898 7789999999999999999953
No 52
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=96.30 E-value=0.004 Score=43.54 Aligned_cols=33 Identities=33% Similarity=0.716 Sum_probs=26.1
Q ss_pred ccccccccccCCCcccCCCCCceeeCCCceeeecCCCCCee
Q 006787 424 ETNECLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQ 464 (631)
Q Consensus 424 d~deC~~~~~~C~~~~~~~~~~C~~~~g~~~C~C~~~~G~~ 464 (631)
++|+|... ..|. +++.|.++.++|.|.|++ ||.
T Consensus 1 d~~~C~~~-~~C~-----~~~~C~~~~g~~~C~C~~--g~~ 33 (39)
T smart00179 1 DIDECASG-NPCQ-----NGGTCVNTVGSYRCECPP--GYT 33 (39)
T ss_pred CcccCcCC-CCcC-----CCCEeECCCCCeEeECCC--CCc
Confidence 36788763 3488 667999999999999999 554
No 53
>smart00181 EGF Epidermal growth factor-like domain.
Probab=95.77 E-value=0.012 Score=40.27 Aligned_cols=30 Identities=30% Similarity=0.743 Sum_probs=24.0
Q ss_pred ccCCCCCCCCCCeeeecCCCeEEecCCCCeec
Q 006787 528 CKERSACQCDGCSCQNTWGGFECKCKGNLLFI 559 (631)
Q Consensus 528 C~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~~ 559 (631)
|..+.+|. ++ .|+++.++|.|.|++||.+.
T Consensus 2 C~~~~~C~-~~-~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 2 CASGGPCS-NG-TCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCcCCCC-CC-EEECCCCCeEeECCCCCccC
Confidence 44423788 55 99999999999999999653
No 54
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=95.71 E-value=0.013 Score=39.68 Aligned_cols=27 Identities=30% Similarity=0.669 Sum_probs=23.4
Q ss_pred CCCCCCCCeeeecCCCeEEecCCCCeec
Q 006787 532 SACQCDGCSCQNTWGGFECKCKGNLLFI 559 (631)
Q Consensus 532 ~~C~~~~~~C~nt~Gsy~C~C~~G~~~~ 559 (631)
.+|. +++.|+++.++|.|.|+.||...
T Consensus 6 ~~C~-~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 6 NPCS-NGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCC-CCCEEecCCCCeEeECCCCCccc
Confidence 3787 78999999999999999999643
No 55
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=95.16 E-value=0.027 Score=53.42 Aligned_cols=97 Identities=19% Similarity=0.435 Sum_probs=63.2
Q ss_pred CceeeCCCceeeecCCCCCeeeeCCCccceeecCCCcccC---CCCCCCCCCCCCCccccceeCC------CceeeCCCC
Q 006787 444 TACKDTFRGRLCECPIVKGVQYRGDGYISCQAYGPARCSI---NNGGCWSDTKNGLTFSACSESQ------ITGCHCPKG 514 (631)
Q Consensus 444 ~~C~~~~g~~~C~C~~~~G~~~~gdg~~~C~~i~~~~C~~---~~~~C~~~~~~g~~~~~C~~~~------~~~C~C~~G 514 (631)
+......+.|.|.|.+ ||.+... .+|+.. .+|.. .+..|... +.|.+.. .|.|.|.+|
T Consensus 11 G~LiQMSNHfEC~Cne--gfvl~~E--ntCE~k--v~C~~~e~~~K~Cgdy-------a~C~~~~~~~~~~~~~C~C~~g 77 (197)
T PF06247_consen 11 GYLIQMSNHFECKCNE--GFVLKNE--NTCEEK--VECDKLENVNKPCGDY-------AKCINQANKGEERAYKCDCING 77 (197)
T ss_dssp EEEEEESSEEEEEEST--TEEEEET--TEEEE------SG-GGTTSEEETT-------EEEEE-SSTTSSTSEEEEE-TT
T ss_pred CEEEEccCceEEEcCC--CcEEccc--cccccc--eecCcccccCccccch-------hhhhcCCCcccceeEEEecccC
Confidence 5666678889999999 9988854 479987 78865 23456654 8898764 699999999
Q ss_pred cccCCCccccCcCccCCCCCCCCCCeeeec---CCCeEEecCCCCe
Q 006787 515 FRGDGHKCEDINECKERSACQCDGCSCQNT---WGGFECKCKGNLL 557 (631)
Q Consensus 515 y~g~~~~C~dideC~~~~~C~~~~~~C~nt---~Gsy~C~C~~G~~ 557 (631)
|......|.+ ++|... .|. .+.|+-. +....|+|.-|+.
T Consensus 78 Y~~~~~vCvp-~~C~~~-~Cg--~GKCI~d~~~~~~~~CSC~IGkV 119 (197)
T PF06247_consen 78 YILKQGVCVP-NKCNNK-DCG--SGKCILDPDNPNNPTCSCNIGKV 119 (197)
T ss_dssp EEESSSSEEE-GGGSS----T--TEEEEEEEGGGSEEEEEE-TEEE
T ss_pred ceeeCCeEch-hhcCce-ecC--CCeEEecCCCCCCceeEeeeceE
Confidence 9965556652 355553 554 5888633 3355999999997
No 56
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=94.75 E-value=0.023 Score=38.34 Aligned_cols=23 Identities=43% Similarity=0.806 Sum_probs=19.5
Q ss_pred CCCceeeCC-CceeeecCCCCCeeeeCC
Q 006787 442 NITACKDTF-RGRLCECPIVKGVQYRGD 468 (631)
Q Consensus 442 ~~~~C~~~~-g~~~C~C~~~~G~~~~gd 468 (631)
++++|++.. ++|.|.|++ +|.|+
T Consensus 8 n~g~C~~~~~~~y~C~C~~----G~~G~ 31 (32)
T PF00008_consen 8 NGGTCIDLPGGGYTCECPP----GYTGK 31 (32)
T ss_dssp TTEEEEEESTSEEEEEEBT----TEEST
T ss_pred CCeEEEeCCCCCEEeECCC----CCccC
Confidence 789999998 999999999 45553
No 57
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=94.15 E-value=0.038 Score=55.24 Aligned_cols=43 Identities=26% Similarity=0.525 Sum_probs=36.1
Q ss_pred CCCcccCCccccccccccccCCCcccCCCCCceeeCCCceeeecCCCCCeeeeCCC
Q 006787 414 EPQICLTGDLETNECLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDG 469 (631)
Q Consensus 414 ~g~~C~~~~~d~deC~~~~~~C~~~~~~~~~~C~~~~g~~~C~C~~~~G~~~~gdg 469 (631)
.+..|. +.+||...++.|+ +.|.++.|+|.|.|++ ||.+..++
T Consensus 180 ~~~~C~----~~~~C~~~~~~c~-------~~C~~~~g~~~c~c~~--g~~~~~~~ 222 (224)
T cd01475 180 QGKICV----VPDLCATLSHVCQ-------QVCISTPGSYLCACTE--GYALLEDN 222 (224)
T ss_pred ccccCc----CchhhcCCCCCcc-------ceEEcCCCCEEeECCC--CccCCCCC
Confidence 456787 5789988888898 7899999999999999 88777665
No 58
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=94.08 E-value=0.05 Score=37.34 Aligned_cols=29 Identities=31% Similarity=0.682 Sum_probs=23.4
Q ss_pred cccccccccCCCcccCCCCCceeeCCCceeeecCC
Q 006787 425 TNECLERNGGCWQDTQANITACKDTFRGRLCECPI 459 (631)
Q Consensus 425 ~deC~~~~~~C~~~~~~~~~~C~~~~g~~~C~C~~ 459 (631)
+++|... ..|. +++.|.+..++|.|.|++
T Consensus 2 ~~~C~~~-~~C~-----~~~~C~~~~~~~~C~C~~ 30 (38)
T cd00054 2 IDECASG-NPCQ-----NGGTCVNTVGSYRCSCPP 30 (38)
T ss_pred cccCCCC-CCcC-----CCCEeECCCCCeEeECCC
Confidence 5678652 2387 668999999999999999
No 59
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.04 E-value=0.11 Score=48.97 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCCCCCCCCEEEEEecCccC-------------------HHHHHHHHHHcCCcEEEEEeCC
Q 006787 93 PFKSKFPRPTVLLLDRGECY-------------------FALKVWHGQQAGAAAVLVADSV 134 (631)
Q Consensus 93 ~~~~~~~~~~i~LV~RG~Cs-------------------F~~Kv~nAq~aGA~avII~~~~ 134 (631)
+|.+-..+|+||||.+|+=. +..|...|+++||+|||++++.
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 34444455778888877643 3459999999999999999875
No 60
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.53 E-value=0.097 Score=61.42 Aligned_cols=58 Identities=24% Similarity=0.597 Sum_probs=38.3
Q ss_pred Cceee-CCCCcccCC--Cccc---cCcCccCC-CCCCCCCCeeeecCCCeEE-ecCCCCeec---CCCCceee
Q 006787 506 ITGCH-CPKGFRGDG--HKCE---DINECKER-SACQCDGCSCQNTWGGFEC-KCKGNLLFI---KEQDACIE 567 (631)
Q Consensus 506 ~~~C~-C~~Gy~g~~--~~C~---dideC~~~-~~C~~~~~~C~nt~Gsy~C-~C~~G~~~~---~d~~~C~~ 567 (631)
+-.|. |.+||.|-| +.|+ --|+|.+. +.|. .|.+..+++.| +|..||.++ +.+..|.|
T Consensus 840 grqCnqCqpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi----~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrP 908 (1758)
T KOG0994|consen 840 GRQCNQCQPGYWGFPECRPCQCNGHADTCDPITGACI----DCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRP 908 (1758)
T ss_pred hhhccccCCCccCCCcCccccccCcccccCccccccc----cccccccccchhhhhccccCCcccCCCCCCCC
Confidence 55664 888888766 4444 23556553 3454 56777788889 599999765 45666775
No 61
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=92.73 E-value=0.081 Score=36.65 Aligned_cols=31 Identities=23% Similarity=0.526 Sum_probs=21.2
Q ss_pred ccCCCCCCCCCCeeeecC-CCeEEecCCCCeecC
Q 006787 528 CKERSACQCDGCSCQNTW-GGFECKCKGNLLFIK 560 (631)
Q Consensus 528 C~~~~~C~~~~~~C~nt~-Gsy~C~C~~G~~~~~ 560 (631)
|... .|. .++.|.+.. |++.|+|..||...+
T Consensus 2 C~~~-~cP-~NA~C~~~~dG~eecrCllgyk~~~ 33 (37)
T PF12946_consen 2 CIDT-KCP-ANAGCFRYDDGSEECRCLLGYKKVG 33 (37)
T ss_dssp -SSS-----TTEEEEEETTSEEEEEE-TTEEEET
T ss_pred ccCc-cCC-CCcccEEcCCCCEEEEeeCCccccC
Confidence 4443 788 789999888 999999999997643
No 62
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=91.36 E-value=0.4 Score=53.44 Aligned_cols=66 Identities=35% Similarity=0.869 Sum_probs=39.1
Q ss_pred eeecCCCCCeeeeCCCccceeecCCCcccCCCCCCCCCCCCCCccccceeCCCceeeCCCCcccCCCccccCcCccCCCC
Q 006787 454 LCECPIVKGVQYRGDGYISCQAYGPARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRGDGHKCEDINECKERSA 533 (631)
Q Consensus 454 ~C~C~~~~G~~~~gdg~~~C~~i~~~~C~~~~~~C~~~~~~g~~~~~C~~~~~~~C~C~~Gy~g~~~~C~dideC~~~~~ 533 (631)
.|.|++ +|.|.. |+.. +|. ..|... +.|+ .-.|.|.+||.|. .|.-. .
T Consensus 297 ~CiC~~----g~~G~d---Cs~~---~cp---adC~g~-------G~Ci---~G~C~C~~Gy~G~--~C~~~-------~ 344 (525)
T KOG1225|consen 297 ECICNP----GYSGKD---CSIR---RCP---ADCSGH-------GKCI---DGECLCDEGYTGE--LCIQR-------A 344 (525)
T ss_pred EeecCC----Cccccc---cccc---cCC---ccCCCC-------Cccc---CCceEeCCCCcCC--ccccc-------c
Confidence 789998 445433 6532 232 234333 5566 3479999999887 55533 2
Q ss_pred CCCCCCeeeecCCCeEEecCCCCe
Q 006787 534 CQCDGCSCQNTWGGFECKCKGNLL 557 (631)
Q Consensus 534 C~~~~~~C~nt~Gsy~C~C~~G~~ 557 (631)
|. +++.|+|. |.|..||+
T Consensus 345 C~-~~g~cv~g-----C~C~~Gw~ 362 (525)
T KOG1225|consen 345 CS-GGGQCVNG-----CKCKKGWR 362 (525)
T ss_pred cC-CCceeccC-----ceeccCcc
Confidence 54 44566542 77777775
No 63
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=90.53 E-value=0.28 Score=32.90 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=16.8
Q ss_pred CCCceeeCCCceeeecCC
Q 006787 442 NITACKDTFRGRLCECPI 459 (631)
Q Consensus 442 ~~~~C~~~~g~~~C~C~~ 459 (631)
+++.|+++.++|.|.|+.
T Consensus 10 ~~~~C~~~~~~~~C~C~~ 27 (36)
T cd00053 10 NGGTCVNTPGSYRCVCPP 27 (36)
T ss_pred CCCEEecCCCCeEeECCC
Confidence 678999999999999999
No 64
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=88.50 E-value=1.9 Score=50.16 Aligned_cols=214 Identities=18% Similarity=0.158 Sum_probs=118.4
Q ss_pred CcCCCCCCCceEEEEEecCCCCCCCCCCC--CCCCCCCCCCCCEEEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCCCc
Q 006787 61 NFGIPDYGGFMVGSVIYPDKGASGCQPFE--GDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL 138 (631)
Q Consensus 61 ~FG~~~~~~~i~g~lv~~~~~~~gC~~~~--~~~~~~~~~~~~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~~~ 138 (631)
.|+.....++..|.+||...+. =..+. ....+ ...++|+|++-|.=++..|+.||+++||.+||||.+.....
T Consensus 148 ~~~~~s~~g~~~~~~Vy~N~~~--~~d~~~l~~~~i---~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~~d~~ 222 (702)
T KOG2195|consen 148 PFRAYSPSGSVTGELVYANYGR--IEDFYKLEDLGI---NLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDPYDYG 222 (702)
T ss_pred chhccCcCCCccceEEEEecCc--hhhhhHhhcCcc---cccCceEEEEccccchhhhHhhHHHhhcCcEEEeecccccc
Confidence 3443344567788888742211 01111 00111 13377999999999999999999999999999998642100
Q ss_pred ------------ccc-------------CCCCCCC-------------C-cCCccccc-CccEEEEeHHHHHHHHHHHHc
Q 006787 139 ------------ITM-------------DSPEEST-------------D-ANGYVEKI-GIPSALIDRAFGLSLKEALKK 178 (631)
Q Consensus 139 ------------~~m-------------~~~~~~~-------------~-~~~~~~~i-~IP~~~I~~~~G~~l~~~l~~ 178 (631)
..| ...++.. + +......+ .||+.=|+..+.+.|...+..
T Consensus 223 ~~~~~~~~p~~~~~~p~~~v~~g~v~~~~~~gdp~tpg~pa~~~~~~~~~~~~~~~~~P~Ip~~Pis~~~ae~l~~~~~g 302 (702)
T KOG2195|consen 223 SDEVLEVYPKGIWFMPEPGVERGKVYNSNGVGDPLTPGYPAVDIYSRHSPDAKFSGGLPKIPSLPISAEDAEILLRLLGG 302 (702)
T ss_pred ccccccccCcccccCCccceecceecccCCCCCCCCCCccCccccccCChhhhhcCCCCCCCCcCccchhHHHHHHHhCC
Confidence 001 0111100 0 01122223 799999999777777766654
Q ss_pred CCEEEEEEEecCCCCCCCCceeEEeeccCCcccccchhhHHHHHHHHHHHHHHHHcCCceeEEEEEEEecCcchhccccc
Q 006787 179 GEEVVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQ 258 (631)
Q Consensus 179 g~~V~v~l~~~~~~p~~~~~v~~~~w~~~~d~~~~~~~~~~~f~~~f~~~~~~l~~~~~~~f~phy~~~~c~~~~~~~~~ 258 (631)
+.... + ...+.|.+|....-.+. + .+.. +...+++.+.+..+-+...+.
T Consensus 303 ~~~~~----~-------~~~~~~~~gpg~~~~~~--------~---------~~~~-~~~~~~ki~NIig~I~Gs~ep-- 351 (702)
T KOG2195|consen 303 GVKPD----G-------LLGVSYRVGPGSTGDKD--------L---------VVVQ-NTREETKIQNIIGKIEGSEEP-- 351 (702)
T ss_pred Ccccc----c-------ccCcccccccccccccc--------c---------eecc-ceeeeeeeeeEEEEEecCcCC--
Confidence 43322 2 34566666666543211 1 0111 356677777776655443321
Q ss_pred cccccccCCccC------CCCCCCCCCCCCCcchhHHHHHhhhhhhhhcccc---CCCcchhhhHHHHhhh
Q 006787 259 CKSQCINHGRYC------APDPEQDFGEGYQGKDVVFENLRQLCVHRVANES---NRSWVWWDYVTDFHIR 320 (631)
Q Consensus 259 ~~~~Ci~~GrYC------~~dp~~~~~~~~~G~dvv~e~lrqlCi~~~~~~~---~~~~~ww~Y~~~f~~~ 320 (631)
++=|--|.+- +.|| -+|.-+++|..|++=.++..... ...+.||+ ..+|+-.
T Consensus 352 --D~~ViigahrDSw~~Ga~dp-------~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWd-AeEfGli 412 (702)
T KOG2195|consen 352 --DRYVIIGAHRDSWTFGAIDP-------NSGTALLLEIARALSKLKKRGWRPRRTILFASWD-AEEFGLL 412 (702)
T ss_pred --CeEEEEeccccccccCCcCC-------CccHHHHHHHHHHHHHHHHcCCCccceEEEEEcc-chhcccc
Confidence 2223333222 4444 25888999999999888765541 23356887 4555543
No 65
>smart00181 EGF Epidermal growth factor-like domain.
Probab=88.49 E-value=0.46 Score=32.17 Aligned_cols=24 Identities=38% Similarity=0.742 Sum_probs=19.3
Q ss_pred cCCCcccCCCCCceeeCCCceeeecCCCCCee
Q 006787 433 GGCWQDTQANITACKDTFRGRLCECPIVKGVQ 464 (631)
Q Consensus 433 ~~C~~~~~~~~~~C~~~~g~~~C~C~~~~G~~ 464 (631)
..|. ++ .|.++.++|.|.|++ ||.
T Consensus 6 ~~C~-----~~-~C~~~~~~~~C~C~~--g~~ 29 (35)
T smart00181 6 GPCS-----NG-TCINTPGSYTCSCPP--GYT 29 (35)
T ss_pred CCCC-----CC-EEECCCCCeEeECCC--CCc
Confidence 3477 55 899999999999999 553
No 66
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=87.16 E-value=1.2 Score=49.86 Aligned_cols=78 Identities=27% Similarity=0.746 Sum_probs=48.4
Q ss_pred CceeeCCCceeeecCCCCCeeeeCCCccceeecCCCcccCCCCCCCCCCCCCCccccceeCCCceeeCCCCcccCCCccc
Q 006787 444 TACKDTFRGRLCECPIVKGVQYRGDGYISCQAYGPARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRGDGHKCE 523 (631)
Q Consensus 444 ~~C~~~~g~~~C~C~~~~G~~~~gdg~~~C~~i~~~~C~~~~~~C~~~~~~g~~~~~C~~~~~~~C~C~~Gy~g~~~~C~ 523 (631)
+.|++ -+|.|++ +|.|+. |... .|.. .|+.. ..|++ + .|.|++||.|. .|+
T Consensus 260 g~c~~----G~CIC~~----Gf~G~d---C~e~---~Cp~---~cs~~-------g~~~~--g-~CiC~~g~~G~--dCs 310 (525)
T KOG1225|consen 260 GQCVE----GRCICPP----GFTGDD---CDEL---VCPV---DCSGG-------GVCVD--G-ECICNPGYSGK--DCS 310 (525)
T ss_pred ceEeC----CeEeCCC----CCcCCC---CCcc---cCCc---ccCCC-------ceecC--C-EeecCCCcccc--ccc
Confidence 55554 2599999 666665 6542 2322 13222 23333 3 89999999986 554
Q ss_pred cCcCccCCCCCCCCCCeeeecCCCeEEecCCCCee
Q 006787 524 DINECKERSACQCDGCSCQNTWGGFECKCKGNLLF 558 (631)
Q Consensus 524 dideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~ 558 (631)
. .+|.. .|+ .++.|+ . -+|.|.+||..
T Consensus 311 ~-~~cpa--dC~-g~G~Ci--~--G~C~C~~Gy~G 337 (525)
T KOG1225|consen 311 I-RRCPA--DCS-GHGKCI--D--GECLCDEGYTG 337 (525)
T ss_pred c-ccCCc--cCC-CCCccc--C--CceEeCCCCcC
Confidence 2 22442 688 788898 2 36999999964
No 67
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=86.55 E-value=1 Score=53.48 Aligned_cols=50 Identities=28% Similarity=0.623 Sum_probs=31.9
Q ss_pred cCccccCCCCcccCCccccccccccccCCCcccCCCCCceeeCCCceee-ecCCCCCeeeeCCC
Q 006787 407 AGFKEATEPQICLTGDLETNECLERNGGCWQDTQANITACKDTFRGRLC-ECPIVKGVQYRGDG 469 (631)
Q Consensus 407 ~Gf~~~~~g~~C~~~~~d~deC~~~~~~C~~~~~~~~~~C~~~~g~~~C-~C~~~~G~~~~gdg 469 (631)
+||.+-++-..|.-.+ ..|+|....+.|- .|.+...++.| .|.. +|.||.
T Consensus 848 pG~WgFPeCr~CqCNg-HA~~Cd~~tGaCi--------~CqD~T~G~~CdrCl~----GyyGdP 898 (1758)
T KOG0994|consen 848 PGYWGFPECRPCQCNG-HADTCDPITGACI--------DCQDSTTGHSCDRCLD----GYYGDP 898 (1758)
T ss_pred CCccCCCcCccccccC-cccccCccccccc--------cccccccccchhhhhc----cccCCc
Confidence 7776544444444222 4667776666664 58888888999 6888 455554
No 68
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=85.54 E-value=0.83 Score=40.69 Aligned_cols=37 Identities=22% Similarity=0.556 Sum_probs=26.3
Q ss_pred cCcCccCC--CCCCCCCCeeeecC--CCeEEecCCCCeecCCCCcee
Q 006787 524 DINECKER--SACQCDGCSCQNTW--GGFECKCKGNLLFIKEQDACI 566 (631)
Q Consensus 524 dideC~~~--~~C~~~~~~C~nt~--Gsy~C~C~~G~~~~~d~~~C~ 566 (631)
++.+|.+. +-|. + +.|.-.. ..+.|.|..||. |..|+
T Consensus 41 ~i~~Cp~ey~~YCl-H-G~C~yI~dl~~~~CrC~~GYt----GeRCE 81 (139)
T PHA03099 41 AIRLCGPEGDGYCL-H-GDCIHARDIDGMYCRCSHGYT----GIRCQ 81 (139)
T ss_pred ccccCChhhCCEeE-C-CEEEeeccCCCceeECCCCcc----ccccc
Confidence 45667663 5687 4 5896554 789999999995 55565
No 69
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=82.36 E-value=0.61 Score=24.78 Aligned_cols=11 Identities=45% Similarity=1.392 Sum_probs=8.7
Q ss_pred eeeCCCCcccC
Q 006787 508 GCHCPKGFRGD 518 (631)
Q Consensus 508 ~C~C~~Gy~g~ 518 (631)
.|.|++||.|.
T Consensus 1 ~C~C~~G~~G~ 11 (13)
T PF12661_consen 1 TCQCPPGWTGP 11 (13)
T ss_dssp EEEE-TTEETT
T ss_pred CccCcCCCcCC
Confidence 48999999986
No 70
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=75.76 E-value=2.6 Score=36.56 Aligned_cols=53 Identities=26% Similarity=0.576 Sum_probs=32.2
Q ss_pred cCccCC-CCCCCCCCeeeecC-----CCeEEecCCCCee---------cCCCCceeecccccccchhhh
Q 006787 526 NECKER-SACQCDGCSCQNTW-----GGFECKCKGNLLF---------IKEQDACIERNGSRFGWFFTF 579 (631)
Q Consensus 526 deC~~~-~~C~~~~~~C~nt~-----Gsy~C~C~~G~~~---------~~d~~~C~~~~~~~~~~~~~~ 579 (631)
++|... +.|. .++.|++.. .=|.|.|.+.... ..-|..|..+..+..-|++++
T Consensus 6 ~aC~~~Tn~Cs-gHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkDvS~~F~L~~~ 73 (103)
T PF12955_consen 6 DACENATNNCS-GHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKKDVSVPFWLFAG 73 (103)
T ss_pred HHHHHhccCCC-CCceEeeccCCCccceEEEEeeccccccccccCceeeecccccccccccchhhHHHH
Confidence 456553 4788 789998873 3489999985532 234566776554333343333
No 71
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=68.33 E-value=8.1 Score=35.15 Aligned_cols=79 Identities=18% Similarity=0.322 Sum_probs=49.5
Q ss_pred chhhhHHHHhhhcCCccccchhhhHHHHHHhcCCChhhhccccCCCcchhhchHHHHHHHHhcCCCCCCceeecceeeee
Q 006787 309 VWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVIN 388 (631)
Q Consensus 309 ~ww~Y~~~f~~~C~~~~~~y~~~C~~~v~~~~~~~~~~v~~C~~d~~~~~~n~iL~~e~~~~~~~~~~~~v~~~P~l~iN 388 (631)
++|+|...+-.. . .....+=...+.+.+|++.+++.+|+.+.. ....++.....-.. .+|...|++.||
T Consensus 68 ~~~~~~~~lf~~---~-~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~---~~~~~~~~~~~~~~----~gi~gtPt~~v~ 136 (154)
T cd03023 68 KYLEFHNALMAT---R-GRLNEESLLRIAKKAGLDEAKLKKDMDDPE---IEATIDKNRQLARA----LGITGTPAFIIG 136 (154)
T ss_pred HHHHHHHHHHhc---C-CCCCHHHHHHHHHHcCCCHHHHHHHhhChH---HHHHHHHHHHHHHH----cCCCcCCeEEEC
Confidence 688888766432 1 112211133467889999999999997642 23344444332222 347889999999
Q ss_pred ccccCCcccc
Q 006787 389 DVQYRGKLER 398 (631)
Q Consensus 389 ~~~y~G~l~~ 398 (631)
+..+.|..+.
T Consensus 137 g~~~~G~~~~ 146 (154)
T cd03023 137 DTVIPGAVPA 146 (154)
T ss_pred CEEecCCCCH
Confidence 9888776543
No 72
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=67.22 E-value=5.3 Score=27.19 Aligned_cols=25 Identities=16% Similarity=0.481 Sum_probs=16.9
Q ss_pred CCCCCCCeeeecCCCeEEecCCCCeecCC
Q 006787 533 ACQCDGCSCQNTWGGFECKCKGNLLFIKE 561 (631)
Q Consensus 533 ~C~~~~~~C~nt~Gsy~C~C~~G~~~~~d 561 (631)
.|. +.|..... +.|.|+.||.++.+
T Consensus 7 ~Cp---A~CDpn~~-~~C~CPeGyIlde~ 31 (34)
T PF09064_consen 7 ECP---ADCDPNSP-GQCFCPEGYILDEG 31 (34)
T ss_pred cCC---CccCCCCC-CceeCCCceEecCC
Confidence 566 67754322 37999999987643
No 73
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=63.73 E-value=11 Score=28.09 Aligned_cols=27 Identities=26% Similarity=0.749 Sum_probs=17.8
Q ss_pred ccCCCCCCCCCCeeeecCCCeEEecCCCCeec
Q 006787 528 CKERSACQCDGCSCQNTWGGFECKCKGNLLFI 559 (631)
Q Consensus 528 C~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~~ 559 (631)
|.....|. .+..|++ -+|.|++||...
T Consensus 22 C~~~~qC~-~~s~C~~----g~C~C~~g~~~~ 48 (52)
T PF01683_consen 22 CESDEQCI-GGSVCVN----GRCQCPPGYVEV 48 (52)
T ss_pred CCCcCCCC-CcCEEcC----CEeECCCCCEec
Confidence 44433565 5677855 379999998643
No 74
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=63.55 E-value=6.1 Score=34.61 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=24.8
Q ss_pred cCcCccCCCCCCCCCCeeeecCCCeEEecCCCCee
Q 006787 524 DINECKERSACQCDGCSCQNTWGGFECKCKGNLLF 558 (631)
Q Consensus 524 dideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~ 558 (631)
..|.|...+.|. +.+.|. ...+-.|.|.+||+.
T Consensus 76 p~d~Cd~y~~CG-~~g~C~-~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 76 PKDQCDVYGFCG-PNGICN-SNNSPKCSCLPGFEP 108 (110)
T ss_pred cccCCCCccccC-CccEeC-CCCCCceECCCCcCC
Confidence 456787756888 889994 445667999999964
No 75
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=63.11 E-value=7.5 Score=27.11 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=19.7
Q ss_pred CCCceeeCC-CceeeecCCCCCeeeeCCC
Q 006787 442 NITACKDTF-RGRLCECPIVKGVQYRGDG 469 (631)
Q Consensus 442 ~~~~C~~~~-g~~~C~C~~~~G~~~~gdg 469 (631)
.++.|.+.. |++.|.|.. ||...++.
T Consensus 9 ~NA~C~~~~dG~eecrCll--gyk~~~~~ 35 (37)
T PF12946_consen 9 ANAGCFRYDDGSEECRCLL--GYKKVGGK 35 (37)
T ss_dssp TTEEEEEETTSEEEEEE-T--TEEEETTE
T ss_pred CCcccEEcCCCCEEEEeeC--CccccCCC
Confidence 568999886 889999999 77765543
No 76
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=54.61 E-value=68 Score=29.37 Aligned_cols=143 Identities=14% Similarity=0.240 Sum_probs=77.8
Q ss_pred CCCceeEEeeccCCcccccchhhHHHHHHHHHHHHHHHHcCCceeEEEEEEEecCcchhccccccccccccCCccCCCCC
Q 006787 195 PDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPDP 274 (631)
Q Consensus 195 ~~~~v~~~~w~~~~d~~~~~~~~~~~f~~~f~~~~~~l~~~~~~~f~phy~~~~c~~~~~~~~~~~~~Ci~~GrYC~~dp 274 (631)
|+.++....+++.. |-...+|-+.+.+..+.+-+.+.+.|..|-+...
T Consensus 10 ~~a~~~v~~f~d~~------Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~-------------------------- 57 (162)
T PF13462_consen 10 PDAPITVTEFFDFQ------CPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD-------------------------- 57 (162)
T ss_dssp TTTSEEEEEEE-TT------SHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS--------------------------
T ss_pred CCCCeEEEEEECCC------CHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc--------------------------
Confidence 46777777777773 5566777777777777763345677766544110
Q ss_pred CCCCCCCCCcchhHHHHHhhhhhhhhccccCCCcchhhhHHHHhhhcCCccccchhhhHHHHHHhcCCChhhhccccCCC
Q 006787 275 EQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDP 354 (631)
Q Consensus 275 ~~~~~~~~~G~dvv~e~lrqlCi~~~~~~~~~~~~ww~Y~~~f~~~C~~~~~~y~~~C~~~v~~~~~~~~~~v~~C~~d~ 354 (631)
+..+..-..--.|+++.. + .||.+...+...-.. +... ..+....+.+.+++++|+.+.
T Consensus 58 ---------~~~~~~a~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~----~~~~--~~i~~~~~~~~~~~~~~~~~~ 116 (162)
T PF13462_consen 58 ---------KHSSLRAAMAAECVADQG-K-----YFWFFHELLFSQQEN----FENK--KDIAANAGGSNEQFNKCLNSD 116 (162)
T ss_dssp ---------HHHHHHHHHHHHHHHHHT-H-----HHHHHHHHHHHHCHS----TSSH--HHHHHHTTSHHHHHHHHHTSH
T ss_pred ---------chhHHHHHHHHHHHHHHh-H-----HHHHHHHHHHHhhhc----cchh--HHHHHHcCCCHHHHHHHhhch
Confidence 011222223345566554 4 688887765554221 1111 333344455677888888754
Q ss_pred cchhhchHHHHHHHHhcCCCCCCceeecceeeeeccccCCccc
Q 006787 355 EADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLE 397 (631)
Q Consensus 355 ~~~~~n~iL~~e~~~~~~~~~~~~v~~~P~l~iN~~~y~G~l~ 397 (631)
.. ...++....... +.+|...|+++|||..+.+..+
T Consensus 117 ~~---~~~~~~~~~~~~----~~~i~~tPt~~inG~~~~~~~~ 152 (162)
T PF13462_consen 117 EI---KAQLEADSQLAR----QLGITGTPTFFINGKYVVGPYT 152 (162)
T ss_dssp HH---HHHHHHHHHHHH----HHT-SSSSEEEETTCEEETTTS
T ss_pred HH---HHHHHHHHHHHH----HcCCccccEEEECCEEeCCCCC
Confidence 32 122222222111 1236789999999998866543
No 77
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=49.08 E-value=10 Score=32.55 Aligned_cols=20 Identities=45% Similarity=0.511 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhcccceee
Q 006787 16 KLTALLLILTVVFSSSVSAR 35 (631)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~~~ 35 (631)
+||+|+|+++++.++.++++
T Consensus 7 llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred HHHHHHHHHHHHHHhhhhhH
Confidence 44444444444434443433
No 78
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=47.10 E-value=32 Score=41.02 Aligned_cols=22 Identities=14% Similarity=0.477 Sum_probs=16.1
Q ss_pred CCeEEecCCCCeecCCCCceeecc
Q 006787 546 GGFECKCKGNLLFIKEQDACIERN 569 (631)
Q Consensus 546 Gsy~C~C~~G~~~~~d~~~C~~~~ 569 (631)
....|.|..||.+ .+.+|.+..
T Consensus 749 ~~~vC~C~~g~~l--~~~~c~~~~ 770 (800)
T PTZ00214 749 NQGVCMCELDAVL--TKGVCVPAK 770 (800)
T ss_pred cCCeEEeCCccee--cCCeeEecc
Confidence 3458999999976 456888653
No 79
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=46.84 E-value=27 Score=42.32 Aligned_cols=59 Identities=22% Similarity=0.471 Sum_probs=42.5
Q ss_pred ceeCC-CceeeCCCCcccCCCccccCcCc-cCCCCCCCCCCeee-ecCCCeEEecCCCCeecCCC
Q 006787 501 CSESQ-ITGCHCPKGFRGDGHKCEDINEC-KERSACQCDGCSCQ-NTWGGFECKCKGNLLFIKEQ 562 (631)
Q Consensus 501 C~~~~-~~~C~C~~Gy~g~~~~C~dideC-~~~~~C~~~~~~C~-nt~Gsy~C~C~~G~~~~~d~ 562 (631)
|.+.. ...|.|..++......-.+.+.| ..++.|. +.|. +.++.|.|.|..||.+..++
T Consensus 339 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Cs---q~C~~~~p~~~~c~c~~g~~~~~~~ 400 (877)
T KOG1215|consen 339 CPDVSVGPRCDCMGAKVLPLGARTDSNPCESDNGGCS---QLCVPNSPGTFKCACSPGYELRLDK 400 (877)
T ss_pred CCccccCCcccCCccceecccccccCCcccccCCccc---eeccCCCCCceeEecCCCcEeccCC
Confidence 66666 88899998887432222232334 4456898 8998 66899999999999887666
No 80
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=45.43 E-value=1.6e+02 Score=26.71 Aligned_cols=76 Identities=22% Similarity=0.324 Sum_probs=48.7
Q ss_pred CCCCCCCCEEEEEe--cCccCHHHHHHHHHHcC-CcEEEEEeCCCCCccccCCCCCCCCcCCcccccCccEEEEeHHHHH
Q 006787 94 FKSKFPRPTVLLLD--RGECYFALKVWHGQQAG-AAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGL 170 (631)
Q Consensus 94 ~~~~~~~~~i~LV~--RG~CsF~~Kv~nAq~aG-A~avII~~~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~ 170 (631)
+.+++-.++|+++- ||.|.=.-=.+.+.+.| |-++||. .+.|++++.+.-- ..||.+-...
T Consensus 44 l~G~~l~Gkilv~P~grGStvGSyVl~~l~~~G~AP~aIv~-~e~EpIla~Gai~-----------a~iPlv~~~~---- 107 (131)
T COG1786 44 LHGESLTGKILVFPGGRGSTVGSYVLYELAKNGRAPAAIVN-EEAEPILAVGAIL-----------AGIPLVDGVD---- 107 (131)
T ss_pred cccccccceEEEeeCCCCccccHHHHHHHHHcCCCchhhhh-cCCcceeeehhhh-----------cCCceEeccH----
Confidence 44445558898887 77887777788888888 5566664 4457666553221 1677654433
Q ss_pred HHHHHHHcCCEEEEE
Q 006787 171 SLKEALKKGEEVVIK 185 (631)
Q Consensus 171 ~l~~~l~~g~~V~v~ 185 (631)
.+.+.++.+..|.+.
T Consensus 108 e~~~~l~~g~~v~v~ 122 (131)
T COG1786 108 EFFEELKTGDRVRVN 122 (131)
T ss_pred HHHHHhccCCEEEEc
Confidence 566777777766554
No 81
>PHA02887 EGF-like protein; Provisional
Probab=44.35 E-value=16 Score=32.25 Aligned_cols=24 Identities=29% Similarity=0.828 Sum_probs=17.8
Q ss_pred cceeCC---CceeeCCCCcccCCCccccC
Q 006787 500 ACSESQ---ITGCHCPKGFRGDGHKCEDI 525 (631)
Q Consensus 500 ~C~~~~---~~~C~C~~Gy~g~~~~C~di 525 (631)
+|.... .+.|.|.+||.|. .|+.+
T Consensus 98 ~C~yI~dL~epsCrC~~GYtG~--RCE~v 124 (126)
T PHA02887 98 ECMNIIDLDEKFCICNKGYTGI--RCDEV 124 (126)
T ss_pred EEEccccCCCceeECCCCcccC--CCCcc
Confidence 455444 7899999999997 67643
No 82
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=42.58 E-value=18 Score=43.83 Aligned_cols=36 Identities=28% Similarity=0.885 Sum_probs=31.2
Q ss_pred CccccCcCccCCCCCCCCCCeeeecCCCeEEecC-CCCe
Q 006787 520 HKCEDINECKERSACQCDGCSCQNTWGGFECKCK-GNLL 557 (631)
Q Consensus 520 ~~C~dideC~~~~~C~~~~~~C~nt~Gsy~C~C~-~G~~ 557 (631)
..|.-+|.|.++ +|+ .++.|.-.+..|.|.|. .||.
T Consensus 540 d~C~i~drClPN-~Ce-hgG~C~Qs~~~f~C~C~~TGY~ 576 (1306)
T KOG3516|consen 540 DMCGISDRCLPN-PCE-HGGKCSQSWDDFECNCELTGYK 576 (1306)
T ss_pred cccccccccCCc-ccc-CCCcccccccceeEeccccccc
Confidence 357778888887 999 89999999999999998 6884
No 83
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=41.05 E-value=29 Score=23.33 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=15.8
Q ss_pred CCCceeeCCCceeeecCCCCCeeeeCC
Q 006787 442 NITACKDTFRGRLCECPIVKGVQYRGD 468 (631)
Q Consensus 442 ~~~~C~~~~g~~~C~C~~~~G~~~~gd 468 (631)
++++|... ..+|.|.+ +|.|+
T Consensus 10 ~~G~C~~~--~g~C~C~~----g~~G~ 30 (32)
T PF07974_consen 10 GHGTCVSP--CGRCVCDS----GYTGP 30 (32)
T ss_pred CCCEEeCC--CCEEECCC----CCcCC
Confidence 77899866 46899999 55554
No 84
>PRK03955 hypothetical protein; Reviewed
Probab=39.50 E-value=2.3e+02 Score=25.86 Aligned_cols=72 Identities=19% Similarity=0.322 Sum_probs=42.6
Q ss_pred CCCCCCEEEEEe--cCccCHHHHHHHHHHcC-CcEEEEEeCCCCCccccCCCCCCCCcCCcccccCccEEEEeHHHHHHH
Q 006787 96 SKFPRPTVLLLD--RGECYFALKVWHGQQAG-AAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSL 172 (631)
Q Consensus 96 ~~~~~~~i~LV~--RG~CsF~~Kv~nAq~aG-A~avII~~~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l 172 (631)
+++-.+||++.. ||.|+=.-=.+.+.+.| |=++||.... ++++..+.-- ..||.+.-..
T Consensus 46 G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~~~-~~ils~GaIv-----------AgIP~V~~~~------ 107 (131)
T PRK03955 46 GESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINLEA-EPIVATGAII-----------SGIPLVDKVD------ 107 (131)
T ss_pred CCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEecC-CceeEeeeee-----------cCCceEcccc------
Confidence 344458898887 77887555555444444 4466776544 5454442211 1688886222
Q ss_pred HHHHHcCCEEEEE
Q 006787 173 KEALKKGEEVVIK 185 (631)
Q Consensus 173 ~~~l~~g~~V~v~ 185 (631)
.+.|+.|..|+|.
T Consensus 108 ~~~l~~G~~V~Vd 120 (131)
T PRK03955 108 ISKLKDGDRVVVD 120 (131)
T ss_pred ceecCCCCEEEEe
Confidence 5678888887665
No 85
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=39.03 E-value=18 Score=37.80 Aligned_cols=7 Identities=57% Similarity=0.705 Sum_probs=4.1
Q ss_pred CchhhHH
Q 006787 1 MMMMMIT 7 (631)
Q Consensus 1 ~~~~~~~ 7 (631)
|||||-.
T Consensus 1 MaMmMTG 7 (291)
T PTZ00459 1 MAMMMTG 7 (291)
T ss_pred Cccchhc
Confidence 6666644
No 86
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=38.77 E-value=19 Score=32.34 Aligned_cols=22 Identities=27% Similarity=0.880 Sum_probs=16.4
Q ss_pred cceeCC---CceeeCCCCcccCCCccc
Q 006787 500 ACSESQ---ITGCHCPKGFRGDGHKCE 523 (631)
Q Consensus 500 ~C~~~~---~~~C~C~~Gy~g~~~~C~ 523 (631)
.|.... .+.|+|..||.|. .|+
T Consensus 57 ~C~yI~dl~~~~CrC~~GYtGe--RCE 81 (139)
T PHA03099 57 DCIHARDIDGMYCRCSHGYTGI--RCQ 81 (139)
T ss_pred EEEeeccCCCceeECCCCcccc--ccc
Confidence 355444 7899999999997 444
No 87
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=37.13 E-value=2e+02 Score=30.78 Aligned_cols=80 Identities=20% Similarity=0.149 Sum_probs=50.0
Q ss_pred CEEEEEecCccCHHHHH--HHHHHcCCcEEEEEeCCCCCccccCCCCCCCCcCCcccccCccEEEEeHHHHHHHHHHHHc
Q 006787 101 PTVLLLDRGECYFALKV--WHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (631)
Q Consensus 101 ~~i~LV~RG~CsF~~Kv--~nAq~aGA~avII~~~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~ 178 (631)
|.+++.+|-+=-...|. ..|.++||.|+|+-.+.+..+++-+.-.-. .......||++.+...++..++.
T Consensus 90 Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~~Gd~gy~----~~s~PtPIPva~v~en~~~y~~~---- 161 (486)
T COG4882 90 GRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIVTGGDWGYS----VSSSPTPIPVAVVPENYSRYAEE---- 161 (486)
T ss_pred CeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCceeEEeccccccc----CCCCCCCcceEEeccCcchhhcc----
Confidence 66888777665555453 368899999999987654444333211110 01124589999999988866542
Q ss_pred CCEEEEEEEe
Q 006787 179 GEEVVIKLDW 188 (631)
Q Consensus 179 g~~V~v~l~~ 188 (631)
...|.+.+|.
T Consensus 162 ~~rvrl~vD~ 171 (486)
T COG4882 162 AGRVRLWVDA 171 (486)
T ss_pred ceeEEEEEec
Confidence 3456666665
No 88
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=36.62 E-value=57 Score=37.97 Aligned_cols=41 Identities=27% Similarity=0.846 Sum_probs=21.6
Q ss_pred eeeCCCCcccCCCccc---cCcCccCC--CCCCCCCCeeeecCCCeEEecCCC
Q 006787 508 GCHCPKGFRGDGHKCE---DINECKER--SACQCDGCSCQNTWGGFECKCKGN 555 (631)
Q Consensus 508 ~C~C~~Gy~g~~~~C~---dideC~~~--~~C~~~~~~C~nt~Gsy~C~C~~G 555 (631)
+|.|.+||+|. .|. +.|-|... ..|. ..++|.= -+|.|...
T Consensus 567 ~CvC~~GwtG~--~C~C~~std~C~~~~G~iCS-GrG~C~C----g~C~C~~~ 612 (783)
T KOG1226|consen 567 RCVCNPGWTGS--ACNCPLSTDTCESSDGQICS-GRGTCEC----GRCKCTDP 612 (783)
T ss_pred cEEcCCCCccC--CCCCCCCCccccCCCCceeC-CCceeeC----CceEcCCC
Confidence 46677777776 443 56666653 3454 3334431 13566554
No 89
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=35.93 E-value=38 Score=43.54 Aligned_cols=54 Identities=26% Similarity=0.550 Sum_probs=30.7
Q ss_pred ceeCC-Cceee-CCCCcccCCCccccCcCccCCCCCCCCCCeeeecC--CCeEEe-cCCCCe
Q 006787 501 CSESQ-ITGCH-CPKGFRGDGHKCEDINECKERSACQCDGCSCQNTW--GGFECK-CKGNLL 557 (631)
Q Consensus 501 C~~~~-~~~C~-C~~Gy~g~~~~C~dideC~~~~~C~~~~~~C~nt~--Gsy~C~-C~~G~~ 557 (631)
|.... +-.|. |..||.|++..=..-| |+.= +|. .+..|..+. ....|. |++||+
T Consensus 749 C~~~t~G~~C~~C~~GfYg~~~~~~~~d-C~~C-~Cp-~~~~~~~~~~~~~~iCk~Cp~gyt 807 (1705)
T KOG1836|consen 749 CKHNTFGGQCAQCVDGFYGLPDLGTSGD-CQPC-PCP-NGGACGQTPEILEVVCKNCPPGYT 807 (1705)
T ss_pred cccCCCCCchhhhcCCCCCccccCCCCC-CccC-CCC-CChhhcCcCcccceecCCCCCCCc
Confidence 44444 66664 9999998763212222 5532 344 444565444 556787 887774
No 90
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=34.54 E-value=1.3e+02 Score=35.89 Aligned_cols=79 Identities=25% Similarity=0.672 Sum_probs=37.3
Q ss_pred ccCCCcccCCCCCceeeCCCceee--ecCCCCCeeee-CCCccceeecCCCcccCCCCCCCCCCCCCCccccceeCC-Cc
Q 006787 432 NGGCWQDTQANITACKDTFRGRLC--ECPIVKGVQYR-GDGYISCQAYGPARCSINNGGCWSDTKNGLTFSACSESQ-IT 507 (631)
Q Consensus 432 ~~~C~~~~~~~~~~C~~~~g~~~C--~C~~~~G~~~~-gdg~~~C~~i~~~~C~~~~~~C~~~~~~g~~~~~C~~~~-~~ 507 (631)
.++||.-.+..=..|++..++.+| .|....| .+. ... +.|+.- --||. +|...- ..+..+|.... +.
T Consensus 495 ~~GCWGpgp~qClsCrn~~rgg~CVe~C~~l~g-~~rf~~~-~~C~~C-hPEC~----TCnG~G--~d~C~~CaHf~dgp 565 (1177)
T KOG1025|consen 495 SGGCWGPGPDQCLSCRNFSRGGTCVEKCNLLGG-EPRFVNS-RECERC-HPECE----TCNGPG--ADNCLQCAHFRDGP 565 (1177)
T ss_pred CCCCcCCCCccceeccccccCceehhhccccCC-ccccccc-ceeccc-Chhhc----cCCCCC--ccchhhhhhcCCCc
Confidence 345873222222367777777788 4644222 111 122 345432 12343 221110 00114465555 67
Q ss_pred eee--CCCCcccCC
Q 006787 508 GCH--CPKGFRGDG 519 (631)
Q Consensus 508 ~C~--C~~Gy~g~~ 519 (631)
.|. ||.|-.|..
T Consensus 566 ~CV~~CP~G~~G~~ 579 (1177)
T KOG1025|consen 566 HCVSDCPDGVTGPK 579 (1177)
T ss_pred chhccCCCcccCCC
Confidence 775 999988764
No 91
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=32.22 E-value=39 Score=39.65 Aligned_cols=27 Identities=15% Similarity=0.436 Sum_probs=17.9
Q ss_pred eecCCCeEEecCCCCeec-CC--CCceeec
Q 006787 542 QNTWGGFECKCKGNLLFI-KE--QDACIER 568 (631)
Q Consensus 542 ~nt~Gsy~C~C~~G~~~~-~d--~~~C~~~ 568 (631)
...+|+-.|.|..||... .| .-.|+..
T Consensus 302 s~~ega~~C~C~~gyyRA~~Dp~~mpCT~P 331 (996)
T KOG0196|consen 302 SSSEGATSCTCENGYYRADSDPPSMPCTRP 331 (996)
T ss_pred CCCCCCCcccccCCcccCCCCCCCCCCCCC
Confidence 456788999999998543 22 2347654
No 92
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=31.96 E-value=50 Score=34.10 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHcCCcEEEEEeCCCCCc------cccCCCCCCCCcCCcccccCccEEEEeHHH-HHHHHHHHHcCCEEE
Q 006787 112 YFALKVWHGQQAGAAAVLVADSVDEPL------ITMDSPEESTDANGYVEKIGIPSALIDRAF-GLSLKEALKKGEEVV 183 (631)
Q Consensus 112 sF~~Kv~nAq~aGA~avII~~~~~~~~------~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~-G~~l~~~l~~g~~V~ 183 (631)
+-.++++-|+.|||.+|++.++.+.++ -.|..+++- ..-...++||++.+-|.+ -...+...+.|..+.
T Consensus 16 ~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I---~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiI 91 (283)
T cd04727 16 TNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMI---KEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMI 91 (283)
T ss_pred CCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHH---HHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEE
Confidence 457899999999999999987765443 233333321 111234789999998877 444444555565443
No 93
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.87 E-value=13 Score=38.20 Aligned_cols=35 Identities=9% Similarity=-0.079 Sum_probs=30.9
Q ss_pred EEEEecCccCHHHHHHHHHHcCCcEEEEEeCCCCC
Q 006787 103 VLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEP 137 (631)
Q Consensus 103 i~LV~RG~CsF~~Kv~nAq~aGA~avII~~~~~~~ 137 (631)
+.+++||+|+..+|.+-+++.+-+|||..++....
T Consensus 149 ~~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~~ 183 (374)
T COG5540 149 DRCNRRGNETEEDPTRERRRTRFKGVIRGSERNGE 183 (374)
T ss_pred HHHHHccCccccCccccchhccccceeeccccCCc
Confidence 45788999999999999999999999999887543
No 94
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=30.22 E-value=1.3e+02 Score=32.79 Aligned_cols=46 Identities=30% Similarity=0.782 Sum_probs=25.7
Q ss_pred cc-cCccccCCCCcccCCccccccccccccCCCcccCCCCCceeeCCCceee-ecCCCCCeeeeC
Q 006787 405 IC-AGFKEATEPQICLTGDLETNECLERNGGCWQDTQANITACKDTFRGRLC-ECPIVKGVQYRG 467 (631)
Q Consensus 405 ~C-~Gf~~~~~g~~C~~~~~d~deC~~~~~~C~~~~~~~~~~C~~~~g~~~C-~C~~~~G~~~~g 467 (631)
.| .||....+...|.. ..+|...+ |. .|.+... -.| .|.. +|.+..
T Consensus 3 ~C~~gy~~~~~~t~C~~----~~~C~~~~--C~--------~Cs~~~~-~~Ct~C~~--~~~lt~ 50 (397)
T PF03302_consen 3 ECTSGYKLSTDKTSCVS----ASECKTPN--CK--------TCSNDKK-EVCTECNS--GYYLTP 50 (397)
T ss_pred cccCCceECCCCCcccc----cCCCCCCC--Cc--------cccCCCC-CccCcCCC--CCcCCC
Confidence 35 67877767777873 34665443 53 4544333 345 4666 555444
No 95
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=28.79 E-value=74 Score=27.33 Aligned_cols=15 Identities=13% Similarity=0.614 Sum_probs=9.6
Q ss_pred ecCCCCeecCCCCceee
Q 006787 551 KCKGNLLFIKEQDACIE 567 (631)
Q Consensus 551 ~C~~G~~~~~d~~~C~~ 567 (631)
.|..||.+. +..|..
T Consensus 41 ~C~~GY~~~--~~~Cv~ 55 (96)
T PTZ00382 41 ECNSGFSLD--NGKCVS 55 (96)
T ss_pred cCcCCcccC--CCcccc
Confidence 488888764 445643
No 96
>PHA02887 EGF-like protein; Provisional
Probab=27.93 E-value=48 Score=29.38 Aligned_cols=37 Identities=24% Similarity=0.501 Sum_probs=24.2
Q ss_pred CcCccCC--CCCCCCCCeeeec--CCCeEEecCCCCeecCCCCceee
Q 006787 525 INECKER--SACQCDGCSCQNT--WGGFECKCKGNLLFIKEQDACIE 567 (631)
Q Consensus 525 ideC~~~--~~C~~~~~~C~nt--~Gsy~C~C~~G~~~~~d~~~C~~ 567 (631)
+++|.+. +-|- +++|.-. .....|.|+.||. |..|..
T Consensus 83 f~pC~~eyk~YCi--HG~C~yI~dL~epsCrC~~GYt----G~RCE~ 123 (126)
T PHA02887 83 FEKCKNDFNDFCI--NGECMNIIDLDEKFCICNKGYT----GIRCDE 123 (126)
T ss_pred ccccChHhhCEee--CCEEEccccCCCceeECCCCcc----cCCCCc
Confidence 3455552 4566 4788654 4668999999995 455643
No 97
>KOG4291 consensus Mucin/alpha-tectorin [Extracellular structures]
Probab=27.01 E-value=1.4e+02 Score=36.65 Aligned_cols=116 Identities=18% Similarity=0.226 Sum_probs=69.0
Q ss_pred CCCcccCCccccccccccccCCCcccCCCCCceeeCCCceeeecCCCCCeeeeCCCccceeecCCCcccCCCCCCCCCCC
Q 006787 414 EPQICLTGDLETNECLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDGYISCQAYGPARCSINNGGCWSDTK 493 (631)
Q Consensus 414 ~g~~C~~~~~d~deC~~~~~~C~~~~~~~~~~C~~~~g~~~C~C~~~~G~~~~gdg~~~C~~i~~~~C~~~~~~C~~~~~ 493 (631)
+...|+ ++++|..-...|.. ..-+..+....+...|.|.. ||.+.+. ..|.+. .+|..+...|...
T Consensus 415 ~~~~ct----~~~~~~~~~~~~~~--~~~g~~~~~~~~~~q~~~~~--G~~~~~~--~~~~~~--~~~~~ns~~~~~n-- 480 (1043)
T KOG4291|consen 415 EVATCT----DVVRCRARCEQPAL--TDWGTKARQSDGGNQCFCFR--GYIYDVP--PECEPV--SECKTNSDACKKN-- 480 (1043)
T ss_pred CCceeE----ecccceeeeccccc--cccccceeecCCcccceecc--CcccccC--cccccc--cccccchhhccCC--
Confidence 344577 35666543222320 00124556666678899988 6665544 356665 5565443323221
Q ss_pred CCCccccceeCCCceeeCCCCcccC--CCccccCcCccCCCCCCCCCCeeeecCCCeEEecCCCCe
Q 006787 494 NGLTFSACSESQITGCHCPKGFRGD--GHKCEDINECKERSACQCDGCSCQNTWGGFECKCKGNLL 557 (631)
Q Consensus 494 ~g~~~~~C~~~~~~~C~C~~Gy~g~--~~~C~dideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~ 557 (631)
..+.|.|..|+... +.. ...+++... .++ +...+.++.+.|.+.+.+||.
T Consensus 481 -----------~~~~~~~~~~~~~~~~~~~-~~r~~~~v~-~~~-~~~~~~~~~~~~~~~~~~~f~ 532 (1043)
T KOG4291|consen 481 -----------GRWYCRNFEGFSITWQGDN-QVRMFDDVT-YGT-QARIMISLYGYYEDKVRKKFR 532 (1043)
T ss_pred -----------ceecccccccccccccccc-ccccccccc-ccc-cceeEeeeccceeeccccCCc
Confidence 14567777777632 233 555666654 566 667899999999999999984
No 98
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=26.68 E-value=1.4e+02 Score=34.92 Aligned_cols=15 Identities=33% Similarity=1.032 Sum_probs=9.6
Q ss_pred ceeeCCCC-cccCCCccc
Q 006787 507 TGCHCPKG-FRGDGHKCE 523 (631)
Q Consensus 507 ~~C~C~~G-y~g~~~~C~ 523 (631)
-+|.|... |.|. .|+
T Consensus 605 g~C~C~~~~~sG~--~CE 620 (783)
T KOG1226|consen 605 GRCKCTDPPYSGE--FCE 620 (783)
T ss_pred CceEcCCCCcCcc--hhh
Confidence 46777766 7765 555
No 99
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=25.43 E-value=86 Score=38.03 Aligned_cols=75 Identities=31% Similarity=0.584 Sum_probs=51.8
Q ss_pred cccccccccCCCcccCCCCCceeeCCCceeeecCCCCCeeeeCCCccceeecCCCcccCCCCCCCCCCCCCCccccce-e
Q 006787 425 TNECLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDGYISCQAYGPARCSINNGGCWSDTKNGLTFSACS-E 503 (631)
Q Consensus 425 ~deC~~~~~~C~~~~~~~~~~C~~~~g~~~C~C~~~~G~~~~gdg~~~C~~i~~~~C~~~~~~C~~~~~~g~~~~~C~-~ 503 (631)
+++|......|. +.|.+......|.|.. ++.+.... .. + .+.|...++.|.+. |. +
T Consensus 325 ~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~--~~~~~~~~-~~--~--~~~~~~~~g~Csq~---------C~~~ 381 (877)
T KOG1215|consen 325 LNECAERVLKCS-------HKCPDVSVGPRCDCMG--AKVLPLGA-RT--D--SNPCESDNGGCSQL---------CVPN 381 (877)
T ss_pred cccchhhccccc-------CCCCccccCCcccCCc--cceecccc-cc--c--CCcccccCCcccee---------ccCC
Confidence 556665555565 6788888888999988 66665555 22 1 25677778888876 77 4
Q ss_pred CC-CceeeCCCCcccCCCcc
Q 006787 504 SQ-ITGCHCPKGFRGDGHKC 522 (631)
Q Consensus 504 ~~-~~~C~C~~Gy~g~~~~C 522 (631)
.+ .+.|.|..||......|
T Consensus 382 ~p~~~~c~c~~g~~~~~~~c 401 (877)
T KOG1215|consen 382 SPGTFKCACSPGYELRLDKC 401 (877)
T ss_pred CCCceeEecCCCcEeccCCc
Confidence 45 99999999998443334
No 100
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=25.36 E-value=63 Score=28.13 Aligned_cols=31 Identities=26% Similarity=0.749 Sum_probs=20.3
Q ss_pred CcccCCCCCCCCCCCCCCccccceeCCCceeeCCCCccc
Q 006787 479 ARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRG 517 (631)
Q Consensus 479 ~~C~~~~~~C~~~~~~g~~~~~C~~~~~~~C~C~~Gy~g 517 (631)
+.|.. .+.|... +.|.......|.|.+||+.
T Consensus 78 d~Cd~-y~~CG~~-------g~C~~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 78 DQCDV-YGFCGPN-------GICNSNNSPKCSCLPGFEP 108 (110)
T ss_pred cCCCC-ccccCCc-------cEeCCCCCCceECCCCcCC
Confidence 44544 2356654 7784433677999999975
No 101
>PF13117 Cag12: Cag pathogenicity island protein Cag12
Probab=25.30 E-value=86 Score=27.81 Aligned_cols=30 Identities=30% Similarity=0.575 Sum_probs=26.0
Q ss_pred CEEEEEecCccCHHHHHHHHHHcCCcEEEEE
Q 006787 101 PTVLLLDRGECYFALKVWHGQQAGAAAVLVA 131 (631)
Q Consensus 101 ~~i~LV~RG~CsF~~Kv~nAq~aGA~avII~ 131 (631)
..|+++.+|+=.|..|-+ .++.||+|+|-+
T Consensus 82 ~iIv~~~~~~~~~~~K~w-L~~nGa~avIe~ 111 (113)
T PF13117_consen 82 KIIVLTGDGNLFFQYKNW-LRKNGATAVIEY 111 (113)
T ss_pred cEEEEcCCHHHHHHHHHH-HHHcCCceeEEe
Confidence 568888899999999987 788999999975
No 102
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=23.68 E-value=48 Score=39.91 Aligned_cols=36 Identities=33% Similarity=0.984 Sum_probs=29.5
Q ss_pred CccCCCCCCCCCCeeeecCCCeEEecCC-CCeecCCCCceeec
Q 006787 527 ECKERSACQCDGCSCQNTWGGFECKCKG-NLLFIKEQDACIER 568 (631)
Q Consensus 527 eC~~~~~C~~~~~~C~nt~Gsy~C~C~~-G~~~~~d~~~C~~~ 568 (631)
.|..+ ||. ++++|...+.+|.|.|.. || .|.+|...
T Consensus 625 ~C~~n-PC~-N~g~C~egwNrfiCDCs~T~~----~G~~CerE 661 (1591)
T KOG3514|consen 625 ICESN-PCQ-NGGKCSEGWNRFICDCSGTGF----EGRTCERE 661 (1591)
T ss_pred ccCCC-ccc-CCCCccccccccccccccCcc----cCccccce
Confidence 47776 999 999999999999999975 45 47788754
No 103
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=22.18 E-value=76 Score=37.55 Aligned_cols=56 Identities=18% Similarity=0.363 Sum_probs=31.6
Q ss_pred eee--CCCCcccCC-CccccCcCccCCCCCCCCCCee-eecCCCeEE--ecCCCCeecCCCCcee
Q 006787 508 GCH--CPKGFRGDG-HKCEDINECKERSACQCDGCSC-QNTWGGFEC--KCKGNLLFIKEQDACI 566 (631)
Q Consensus 508 ~C~--C~~Gy~g~~-~~C~dideC~~~~~C~~~~~~C-~nt~Gsy~C--~C~~G~~~~~d~~~C~ 566 (631)
.|. |+++|.-.. ..|....+|..-+++. +.-+= +-+. -.| .||.||+.+.+...|.
T Consensus 263 ~CV~~Cp~~~Y~~e~~RCvt~~~C~~l~~~~-~~~i~G~~~~--~~Cv~~CPsGy~~N~~~~~C~ 324 (1025)
T KOG4258|consen 263 VCVEACPPDYYLFENWRCVTREECALLHSLS-NSVISGVIHA--GQCVAKCPSGYKRNSSSSECV 324 (1025)
T ss_pred ceeccCCcchhhhccceeccHHHHHHhcCcc-cccccceecc--ccchhhCCCcceecCccccee
Confidence 464 999887443 4798888898743333 11000 0011 135 5899998776643333
No 104
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=20.41 E-value=2e+02 Score=22.45 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=33.3
Q ss_pred EEEEEecCccCHHHHHHHHHHc-CCcEEEEEeCCCCCc-cccCCCCCCCCcCCcccccCccEEEEeHH
Q 006787 102 TVLLLDRGECYFALKVWHGQQA-GAAAVLVADSVDEPL-ITMDSPEESTDANGYVEKIGIPSALIDRA 167 (631)
Q Consensus 102 ~i~LV~RG~CsF~~Kv~nAq~a-GA~avII~~~~~~~~-~~m~~~~~~~~~~~~~~~i~IP~~~I~~~ 167 (631)
.|.|..+-+|+|-.|++.+.+. |... ..+|-..+.. ..+. ......++|+++|...
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~-~~~~v~~~~~~~~~~---------~~~g~~~vP~ifi~g~ 59 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISY-EEIPLGKDITGRSLR---------AVTGAMTVPQVFIDGE 59 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCc-EEEECCCChhHHHHH---------HHhCCCCcCeEEECCE
Confidence 3888999999999999987654 5443 3334321111 1110 0012358899998754
No 105
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=20.32 E-value=1.2e+02 Score=23.59 Aligned_cols=26 Identities=23% Similarity=0.555 Sum_probs=19.3
Q ss_pred eeccCCcccccchhhHHHHHHHHHHH
Q 006787 203 LWTNSNDECGIRCDEQMNFVKNFKGH 228 (631)
Q Consensus 203 ~w~~~~d~~~~~~~~~~~f~~~f~~~ 228 (631)
|-+++...||+...+|+..+++.++.
T Consensus 19 fi~D~Se~CGysie~Q~~L~~~ik~~ 44 (58)
T PF06858_consen 19 FIIDPSEQCGYSIEEQLSLFKEIKPL 44 (58)
T ss_dssp EEE-TT-TTSS-HHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHH
Confidence 44589999999999999999888874
Done!