Query 006789
Match_columns 631
No_of_seqs 157 out of 1102
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 14:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4176 Uncharacterized conser 100.0 4.4E-41 9.4E-46 350.7 19.1 301 45-422 7-308 (323)
2 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 3.9E-31 8.5E-36 252.7 11.5 178 223-416 1-194 (194)
3 PRK15401 alpha-ketoglutarate-d 100.0 5.8E-28 1.3E-32 240.4 19.3 186 218-418 14-213 (213)
4 KOG3200 Uncharacterized conser 99.9 1.9E-26 4.1E-31 221.9 13.2 181 212-419 2-215 (224)
5 TIGR00568 alkb DNA alkylation 99.9 3.6E-24 7.8E-29 206.6 16.2 161 227-403 1-169 (169)
6 COG3145 AlkB Alkylated DNA rep 99.9 1.7E-21 3.6E-26 191.7 13.8 175 217-413 10-194 (194)
7 KOG3959 2-Oxoglutarate- and ir 99.8 2.2E-20 4.8E-25 186.9 4.3 179 220-427 70-286 (306)
8 PRK05467 Fe(II)-dependent oxyg 97.8 0.00027 5.9E-09 72.1 12.7 150 224-415 2-174 (226)
9 smart00702 P4Hc Prolyl 4-hydro 97.6 0.0023 5.1E-08 61.2 15.2 161 222-416 1-176 (178)
10 PF03171 2OG-FeII_Oxy: 2OG-Fe( 97.6 5.8E-05 1.3E-09 65.3 3.4 82 324-417 1-96 (98)
11 KOG2731 DNA alkylation damage 96.9 0.0009 2E-08 72.0 4.8 119 276-405 169-293 (378)
12 PF13640 2OG-FeII_Oxy_3: 2OG-F 95.5 0.0079 1.7E-07 52.1 1.9 81 327-415 1-97 (100)
13 COG3128 PiuC Uncharacterized i 94.3 0.29 6.3E-06 49.4 9.6 83 328-415 85-177 (229)
14 PF12933 FTO_NTD: FTO catalyti 93.7 0.33 7.2E-06 50.6 8.9 40 377-416 210-249 (253)
15 TIGR01762 chlorin-enz chlorina 93.4 1.4 3.1E-05 46.5 13.3 41 378-422 208-251 (288)
16 PLN00052 prolyl 4-hydroxylase; 93.0 1.9 4.2E-05 46.3 13.7 168 218-415 50-248 (310)
17 KOG1924 RhoA GTPase effector D 89.1 2 4.2E-05 51.2 9.6 9 12-20 116-124 (1102)
18 KOG1924 RhoA GTPase effector D 88.1 3 6.5E-05 49.8 10.2 6 221-226 293-298 (1102)
19 PF09859 Oxygenase-NA: Oxygena 83.9 3.6 7.8E-05 41.0 7.1 109 301-414 41-167 (173)
20 PF13759 2OG-FeII_Oxy_5: Putat 79.6 3.7 8E-05 36.3 5.1 84 327-415 2-100 (101)
21 PF12851 Tet_JBP: Oxygenase do 68.5 6.4 0.00014 38.8 4.1 35 378-415 127-167 (171)
22 TIGR02466 conserved hypothetic 65.3 45 0.00098 33.9 9.5 87 324-415 95-196 (201)
23 KOG1591 Prolyl 4-hydroxylase a 61.0 39 0.00084 36.3 8.5 166 218-414 93-279 (289)
24 KOG4849 mRNA cleavage factor I 45.3 1.4E+02 0.003 33.5 9.5 9 537-545 318-326 (498)
25 KOG1830 Wiskott Aldrich syndro 44.6 3E+02 0.0064 31.7 12.1 32 48-91 49-80 (518)
26 KOG3671 Actin regulatory prote 35.3 1.3E+02 0.0027 35.1 7.7 77 465-552 381-465 (569)
27 COG3826 Uncharacterized protei 32.7 1.5E+02 0.0033 30.5 7.0 111 300-415 102-232 (236)
28 COG5285 Protein involved in bi 30.9 65 0.0014 35.0 4.4 54 378-436 192-247 (299)
29 PLN02984 oxidoreductase, 2OG-F 29.0 1.8E+02 0.0039 31.8 7.5 79 325-417 200-296 (341)
30 PLN02947 oxidoreductase 28.2 1.7E+02 0.0037 32.3 7.3 79 326-418 226-321 (374)
31 PLN02904 oxidoreductase 27.7 1.8E+02 0.0038 31.9 7.2 80 326-418 209-304 (357)
32 COG2850 Uncharacterized conser 26.3 2.9E+02 0.0064 31.1 8.4 109 299-417 95-214 (383)
33 PLN02912 oxidoreductase, 2OG-F 24.9 1.8E+02 0.0038 31.8 6.5 80 325-418 197-293 (348)
34 PLN03001 oxidoreductase, 2OG-F 24.0 1.9E+02 0.0041 30.3 6.4 78 327-418 118-212 (262)
35 PLN02997 flavonol synthase 23.8 2.1E+02 0.0046 30.9 6.8 79 326-418 184-279 (325)
36 PF05721 PhyH: Phytanoyl-CoA d 23.3 95 0.0021 29.0 3.6 25 222-246 4-28 (211)
37 PRK08304 stage V sporulation p 22.9 38 0.00083 37.2 1.0 28 25-52 205-233 (337)
38 PLN02485 oxidoreductase 22.8 2E+02 0.0043 30.9 6.4 79 326-417 185-285 (329)
39 PF08007 Cupin_4: Cupin superf 22.5 1.4E+02 0.0031 31.9 5.2 83 325-416 112-208 (319)
40 KOG0132 RNA polymerase II C-te 22.3 5.1E+02 0.011 31.9 9.9 40 434-473 602-641 (894)
41 PF07451 SpoVAD: Stage V sporu 22.2 39 0.00084 37.0 0.9 28 25-52 200-228 (329)
42 PLN02515 naringenin,2-oxogluta 22.0 2.9E+02 0.0062 30.4 7.5 82 325-418 195-293 (358)
43 PRK12404 stage V sporulation p 21.4 42 0.0009 36.9 0.9 28 25-52 203-231 (334)
44 TIGR02845 spore_V_AD stage V s 20.5 46 0.00099 36.5 1.0 28 25-52 199-227 (327)
45 PLN02704 flavonol synthase 20.4 1.9E+02 0.0042 31.2 5.7 78 327-418 201-295 (335)
46 PLN02299 1-aminocyclopropane-1 20.0 2.3E+02 0.0049 30.6 6.1 79 326-418 159-255 (321)
No 1
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.4e-41 Score=350.74 Aligned_cols=301 Identities=34% Similarity=0.498 Sum_probs=252.7
Q ss_pred CchhHHHHHHhhhccccchhhhccccchHHHHHHHHHHHHHHhhccccCCCCCCCccccccccccccccccccccccCCC
Q 006789 45 GEYDFAINCIQQRRCNWNSVLHLQQYFSVSEVMLALQQVAWRKQQRSFDHHHHHHHQQQHHLNRTKRSAFVKKDFHNNNN 124 (631)
Q Consensus 45 ~eyd~v~~~~~~rr~~w~~vl~mq~~~sv~dv~~~Lqqva~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (631)
-||+.|...|||||+||.+++.|+.+.+.+.|+.++|.++-+....... +
T Consensus 7 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~------------------------~------ 56 (323)
T KOG4176|consen 7 YEYAKVAKKIHRRRLNSSDVLVQSSRESTSYLAVANQGLAAGLAEAALL------------------------V------ 56 (323)
T ss_pred ccHHHHHHHHHhhhcccCCcceecccCCcHHHHhhccchhhhhhhhhhh------------------------c------
Confidence 6899999999999999999999999999999999999988774211100 0
Q ss_pred CCCCCCCCCCCCCCcccccccccccCCCcccccCCCccccCCCCCccccccccCCCCCcCcCCcccccchhccccccccc
Q 006789 125 NNNHAFDSNSSAFDDKKADVVMKAHDDGSAKSLGNSEITQVGDAEPKAEALDDGCTPGLKENDSQSVQSQNEKQNQSMAA 204 (631)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (631)
.+++ +..++.++.+++++ .....|+. ++. +.+..+.+-....
T Consensus 57 -----------------------~~~~----~~~~~~~~~~~s~~----~~~~~~~~--e~~-----~~~~~~~~~~~~i 98 (323)
T KOG4176|consen 57 -----------------------DAED----GEVDSGIMSPGSED----SLFRELYS--EES-----RLRYRTDANLKAI 98 (323)
T ss_pred -----------------------cccc----cccccccccCCccc----chhhhhch--hhh-----hhhhhhhcccccc
Confidence 0000 11122233333331 01112221 111 1112344556889
Q ss_pred cceeeecccCCcccccCCceEEecCCCCHHHHHHHHHHHHhhHhcCCceeecCceEEecCCcccCCCceeEecCCcccCC
Q 006789 205 KSFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDG 284 (631)
Q Consensus 205 k~f~~~E~vdg~~VnvVpGL~y~pdFLS~eEe~kLLs~I~el~~sgRR~qlyGkty~~pRr~mkg~gReviq~G~~Y~Ys 284 (631)
|.|.++|.+.++.+|+++|++++...|++.|...|.+++.++..++++..+.+.++.. |++|++|+++|||++|.|.
T Consensus 99 ~~f~~~e~~~~~~~n~~~~~~l~~~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~~---~~~gk~R~~iq~G~~f~y~ 175 (323)
T KOG4176|consen 99 KGFGEQEQLKGQSVNVVEGLKLRDEVFIPGELSLIVDFVTELEEKGLIGALVDETFTY---QESGKHREVIQLGYPFDYR 175 (323)
T ss_pred ccccceeeccchhhhhhhhheeeccccChhhceehhhhhhhhHHhhhhccccccccee---eccccceeeeecCceeccC
Confidence 9999999999999999999999999999999999999999999999999999988887 7889999999999999999
Q ss_pred CCCcccCCCCCCCCCCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCCCEEEEEc-Cceeeee
Q 006789 285 PPEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFL-TECDMTF 363 (631)
Q Consensus 285 ~~e~~n~~g~~~~~~~ePIP~~Lq~LidRLv~~~ll~~~PNqcLIN~Y~pGdgI~PHvDep~FG~PIvsLSL-S~cvM~F 363 (631)
+...++.+ ..+|||..++.|++||+.+.+++.+||+|+||+|++|++|.||+|.++|++||++||| |+|+|.|
T Consensus 176 ~~~~d~~~------~~~piPs~~~~ii~rlv~~~~ip~~pd~~~iN~Ye~G~~i~ph~~~~~F~~Pi~slS~lSe~~m~F 249 (323)
T KOG4176|consen 176 TNNVDESK------PVDPIPSLFKSIIDRLVSWRVIPERPDQCTINFYEPGDGIPPHIDHSAFLDPISSLSFLSECTMEF 249 (323)
T ss_pred CCcccccC------ccCCCchHHHHHHHHhhhhccCCCCCCeeEEEeeCCCCCCCCCCChHHhcCceEEEEeecceeEEe
Confidence 76655432 2799999999999999999999999999999999999999999999999999999987 9999999
Q ss_pred eeccCCCCCCCCcceEEEEecCCcEEEecccccccccccccCCCCCeEEEEeeeccCCC
Q 006789 364 GRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKSQPKK 422 (631)
Q Consensus 364 gr~~~~d~~gd~~~~~~L~L~~GSLLVMsGeAR~~WkHaIp~~r~rRISLTFRrv~p~~ 422 (631)
+|.+..++.+++++.++++|..||+|||.|.+.+..+|+++..+..|||||||++++.+
T Consensus 250 g~~~~~~~~~~~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~~~~~kRisitfrki~~~~ 308 (323)
T KOG4176|consen 250 GHGLLSDNIGNFRGSLSLPLRYGSVLVIRGRSADVAPHCIRPSRNKRISITFRKIRPDP 308 (323)
T ss_pred cccccccCccccccccccccccCeEEEeCCCcccccccccCCCCCceEEEEEEEeccCC
Confidence 99998888899999999999999999999999999999999999999999999999966
No 2
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=99.97 E-value=3.9e-31 Score=252.74 Aligned_cols=178 Identities=22% Similarity=0.385 Sum_probs=122.6
Q ss_pred ceEEecCCCCHHHHHHHHHHHHh-hHhcCCceeecCceEEecCCcccCCCceeEecCCcccCCCCCcccCCCCCCCCCCC
Q 006789 223 GLKLYEEVSGNSEVSKLVSLVND-LRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIE 301 (631)
Q Consensus 223 GL~y~pdFLS~eEe~kLLs~I~e-l~~sgRR~qlyGkty~~pRr~mkg~gReviq~G~~Y~Ys~~e~~n~~g~~~~~~~e 301 (631)
||+|++|||+.+|+++|++.|.+ ..|...... .++.+...+.++++. .....+..|.|.... ......+.
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~y~y~~~~------~~~~~~~~ 71 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYP-MGKVYSLPRKLCGGL--SWVGDGPSYRYSGKR------PVRSKPWP 71 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCC-CCCECCECCE-SSEE--EEEECT--CCCTCC-------EECCCEBS
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEc-CCCEEccceecceee--EEECCCCCeEcCCcc------ccCCCCCC
Confidence 89999999999999999999984 444433333 366666554432211 112234677775220 01345778
Q ss_pred CCcHHHHHHHHHHHhCcc--CCCCCCEEEEeccCCCCCCCCCCCCCCC--CCCEEEEEc-CceeeeeeeccCCCCCCCCc
Q 006789 302 PIPSLLQDVIDRLVGLQI--MTVKPDSCIVDVFNEGDHSQPHISPSWF--GRPVCILFL-TECDMTFGRMIGIDHPGDYR 376 (631)
Q Consensus 302 PIP~~Lq~LidRLv~~~l--l~~~PNqcLIN~Y~pGdgI~PHvDep~F--G~PIvsLSL-S~cvM~Fgr~~~~d~~gd~~ 376 (631)
+||++|..+++++.+... ....||+||||+|.+|++|+||+|..++ +.+|++||| ++|+|.|++... ..
T Consensus 72 ~~p~~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~------~~ 145 (194)
T PF13532_consen 72 PFPEWLSRLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSD------DD 145 (194)
T ss_dssp CCHHHHHHHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC-CCSEEEEEEEES-EEEEEEECGG------TS
T ss_pred CccHHHHHHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccccCCCcEEEEEEccCceEEEeeccC------CC
Confidence 999999999999976443 2479999999999999999999988754 889999999 899999987532 23
Q ss_pred ceEEEEecCCcEEEecccccccccccccCCCC----------CeEEEEee
Q 006789 377 GTLRLSVAPGSLLVMQGKSADIAKHAISSIRK----------QRILVTFT 416 (631)
Q Consensus 377 ~~~~L~L~~GSLLVMsGeAR~~WkHaIp~~r~----------rRISLTFR 416 (631)
..++|.|++||||||+|++|+.| |+|++... .|||||||
T Consensus 146 ~~~~~~L~~gsl~vm~g~~r~~~-H~I~~~~~~~~~~~~~~~~RislTfR 194 (194)
T PF13532_consen 146 EPIEVPLPPGSLLVMSGEARYDW-HGIPPVKKDTHPSHYVRGRRISLTFR 194 (194)
T ss_dssp -EEEEEE-TTEEEEEETTHHHHE-EEE-S-SCEEEESTEE-S-EEEEEEE
T ss_pred ccEEEEcCCCCEEEeChHHhhhe-eEcccccCCccccccCCCCEEEEEeC
Confidence 68999999999999999999999 99999554 89999999
No 3
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=99.96 E-value=5.8e-28 Score=240.35 Aligned_cols=186 Identities=17% Similarity=0.212 Sum_probs=136.4
Q ss_pred cccCCceEEecCCCCHHHHHHHHHHHHhhHhc--CCceeecCceEEecCCcccCCCceeEecCCcccCCCCCcccCCCCC
Q 006789 218 VNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTA--GKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTS 295 (631)
Q Consensus 218 VnvVpGL~y~pdFLS~eEe~kLLs~I~el~~s--gRR~qlyGkty~~pRr~mkg~gReviq~G~~Y~Ys~~e~~n~~g~~ 295 (631)
..+.+|..++++|. .+++++|++.|.++-.. -++..++|......|....|.-.++.+- ..|.|+.... .
T Consensus 14 ~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~~~~gg~~msv~mt~~G~~~W~~d~-~~YrYs~~~~------~ 85 (213)
T PRK15401 14 EPLAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHMVTPGGYTMSVAMTNCGALGWVTDR-RGYRYSPIDP------L 85 (213)
T ss_pred eecCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccceecCCCCcceeEEeccccceEecCC-CCcccCCcCC------C
Confidence 34568999999994 99999999998864211 1456666654444433222211233332 4677763210 1
Q ss_pred CCCCCCCCcHHHHHHHHHHHhC-ccCCCCCCEEEEeccCCCCCCCCCCC--CCCCCCCEEEEEc-CceeeeeeeccCCCC
Q 006789 296 RDRRIEPIPSLLQDVIDRLVGL-QIMTVKPDSCIVDVFNEGDHSQPHIS--PSWFGRPVCILFL-TECDMTFGRMIGIDH 371 (631)
Q Consensus 296 ~~~~~ePIP~~Lq~LidRLv~~-~ll~~~PNqcLIN~Y~pGdgI~PHvD--ep~FG~PIvsLSL-S~cvM~Fgr~~~~d~ 371 (631)
....+.+||++|..|.+++... +.....||+||||+|++|++|+||+| +..|+.||++||| .+|+|.|++...
T Consensus 86 ~~~pwp~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~~--- 162 (213)
T PRK15401 86 TGKPWPAMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLKR--- 162 (213)
T ss_pred CCCCCCCchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCcccCCCCEEEEeCCCCeEEEecccCC---
Confidence 2456778888999999998543 22356999999999999999999997 3568889999999 899999987532
Q ss_pred CCCCcceEEEEecCCcEEEecccccccccccccCCC--------CCeEEEEeeec
Q 006789 372 PGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIR--------KQRILVTFTKS 418 (631)
Q Consensus 372 ~gd~~~~~~L~L~~GSLLVMsGeAR~~WkHaIp~~r--------~rRISLTFRrv 418 (631)
...+.+|.|++||||||.|++|+ |.|+|++++ ..|||||||++
T Consensus 163 ---~~~~~~l~L~~Gdllvm~G~sr~-~~HgVp~~~~~~~p~~g~~RINLTFR~~ 213 (213)
T PRK15401 163 ---SDPLQRILLEHGDVVVWGGPSRL-RYHGILPLKAGEHPLTGECRINLTFRKA 213 (213)
T ss_pred ---CCceEEEEeCCCCEEEECchHhh-eeccCCcCCCCcCCCCCCCeEEEEeEcC
Confidence 12368999999999999999997 669999954 37999999985
No 4
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=1.9e-26 Score=221.95 Aligned_cols=181 Identities=18% Similarity=0.216 Sum_probs=143.8
Q ss_pred ccCCcccccCCceEEecCCCCHHHHHHHHHHHHhhHhcCCceeecCceEEecCCcccCCCceeEecCCcccCCCCCcccC
Q 006789 212 MVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIA 291 (631)
Q Consensus 212 ~vdg~~VnvVpGL~y~pdFLS~eEe~kLLs~I~el~~sgRR~qlyGkty~~pRr~mkg~gReviq~G~~Y~Ys~~e~~n~ 291 (631)
++++..|..-|-..||++||+++|+..+++.|...+. .+|.....|++..||.--.-
T Consensus 2 ~~~~F~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~---------------pkW~~L~NRRLqNyGGvvh~-------- 58 (224)
T KOG3200|consen 2 NIKKFIVKSAPTMIYIPNFITEEEENLYLSHIENAPQ---------------PKWRVLANRRLQNYGGVVHK-------- 58 (224)
T ss_pred CcceeEecccceEEEcCCccChHHHHHHHHHHhcCCC---------------chhHHHHhhhhhhcCCcccc--------
Confidence 4566777777888999999999999999999986541 11222233445555421110
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCCCEEEEEc-CceeeeeeeccCCC
Q 006789 292 GGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFL-TECDMTFGRMIGID 370 (631)
Q Consensus 292 ~g~~~~~~~ePIP~~Lq~LidRLv~~~ll~~~PNqcLIN~Y~pGdgI~PHvDep~FG~PIvsLSL-S~cvM~Fgr~~~~d 370 (631)
..+.++.+|+||+.+.+++-..+++....|++|||+|.+|+||+||.|+|.|.+.|+++|| |.|+|+|......+
T Consensus 59 ----~glipeelP~wLq~~v~kinnlglF~s~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vldf~~p~r~e 134 (224)
T KOG3200|consen 59 ----TGLIPEELPPWLQYYVDKINNLGLFKSPANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVLDFYDPVRQE 134 (224)
T ss_pred ----CCcCccccCHHHHHHHHHhhcccccCCCcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEEecccccccc
Confidence 3456799999999999999888999899999999999999999999999999988888999 99999998633211
Q ss_pred CCC-----C--CcceEEEEecCCcEEEecccccccccccccC-------------------------CCCCeEEEEeeec
Q 006789 371 HPG-----D--YRGTLRLSVAPGSLLVMQGKSADIAKHAISS-------------------------IRKQRILVTFTKS 418 (631)
Q Consensus 371 ~~g-----d--~~~~~~L~L~~GSLLVMsGeAR~~WkHaIp~-------------------------~r~rRISLTFRrv 418 (631)
..+ + .+..++|.|+++||||+.|+++.++.|+|.. .++.|||||.|+|
T Consensus 135 ~~d~te~~dqp~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sna~ac~s~k~Gd~lvr~tRvSLTiR~V 214 (224)
T KOG3200|consen 135 VNDGTESKDQPLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSNALACSSRKDGDKLVRQTRVSLTIRLV 214 (224)
T ss_pred cCCccccCCCCccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhhhhhccccCCcceeeecceeEEEEecc
Confidence 111 1 2346899999999999999999999999987 4689999999987
Q ss_pred c
Q 006789 419 Q 419 (631)
Q Consensus 419 ~ 419 (631)
-
T Consensus 215 P 215 (224)
T KOG3200|consen 215 P 215 (224)
T ss_pred h
Confidence 4
No 5
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=99.92 E-value=3.6e-24 Score=206.60 Aligned_cols=161 Identities=18% Similarity=0.238 Sum_probs=125.6
Q ss_pred ecCCCCHHHHHHHHHHHHh----hHhcCCceeecCceEEecCCcccCCCceeEecCCcccCCCCCcccCCCCCCCCCCCC
Q 006789 227 YEEVSGNSEVSKLVSLVND----LRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEP 302 (631)
Q Consensus 227 ~pdFLS~eEe~kLLs~I~e----l~~sgRR~qlyGkty~~pRr~mkg~gReviq~G~~Y~Ys~~e~~n~~g~~~~~~~eP 302 (631)
+++|+..+++..|++.+.+ .+|.+ .+.++|+++.++|..+ ++-|++.+ |+.|+|+..... ....+.+
T Consensus 1 l~~~~~~~~~~~l~~~~~~~~~~~~w~~-~~~~~gk~~~~pr~~~-~~l~W~~~-g~~Y~ys~~~~~------~~~~~p~ 71 (169)
T TIGR00568 1 LKRYFAFNAQEQLIRDINDVASQDPFRQ-YVTPGGYTMSVAMTNL-GKLGWTTH-GQGYLYSPKDPQ------TNKPWPA 71 (169)
T ss_pred CCCccChHHHHHHHHHHHHHhhcCCCcC-eEecCCeEeeehhhhc-ccceEEcC-CCcccCCCcccC------CCCCCCC
Confidence 3688999999999998874 45666 4888999999998743 22234444 889999732211 1235566
Q ss_pred CcHHHHHHHHHHHhC-ccCCCCCCEEEEeccCCCCCCCCCCCCCCCC--CCEEEEEc-CceeeeeeeccCCCCCCCCcce
Q 006789 303 IPSLLQDVIDRLVGL-QIMTVKPDSCIVDVFNEGDHSQPHISPSWFG--RPVCILFL-TECDMTFGRMIGIDHPGDYRGT 378 (631)
Q Consensus 303 IP~~Lq~LidRLv~~-~ll~~~PNqcLIN~Y~pGdgI~PHvDep~FG--~PIvsLSL-S~cvM~Fgr~~~~d~~gd~~~~ 378 (631)
||++|..|.+++... ++....||+||||+|++|++|+||+|+++++ .||++||| ++|+|.|+++.. ...+
T Consensus 72 ~P~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~~------~~~~ 145 (169)
T TIGR00568 72 MPQDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKR------NDPP 145 (169)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCccccccccccccCCCCEEEEeCCCCEEEEecCCcC------CCce
Confidence 999999999998542 2334699999999999999999999976665 69999999 899999987632 1236
Q ss_pred EEEEecCCcEEEecccccccccccc
Q 006789 379 LRLSVAPGSLLVMQGKSADIAKHAI 403 (631)
Q Consensus 379 ~~L~L~~GSLLVMsGeAR~~WkHaI 403 (631)
.+|.|++||||||+|++|+ +.|+|
T Consensus 146 ~~l~L~sGsllvM~G~sR~-~~Hgv 169 (169)
T TIGR00568 146 KRLRLHSGDVVIMGGESRL-AFHGV 169 (169)
T ss_pred EEEEeCCCCEEEECCchhc-cccCC
Confidence 8999999999999999997 77987
No 6
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.7e-21 Score=191.70 Aligned_cols=175 Identities=19% Similarity=0.115 Sum_probs=125.4
Q ss_pred ccccCCceEEecCCCCHHHHHHHHHHHH----hhHhcCCceeecCceEEecCCcccCCCceeEecCCcccCCCCCcccCC
Q 006789 217 MVNVVDGLKLYEEVSGNSEVSKLVSLVN----DLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAG 292 (631)
Q Consensus 217 ~VnvVpGL~y~pdFLS~eEe~kLLs~I~----el~~sgRR~qlyGkty~~pRr~mkg~gReviq~G~~Y~Ys~~e~~n~~ 292 (631)
+..+.+|+.++++|+ -.++.+|++.|. +.+|...+...+|+.+.+.+... ++.+ -..|.|+..
T Consensus 10 ~~~~~~G~~~~~~~~-~~~~~~l~~~l~~~~~~~P~~~~~~~~~g~~~sV~r~~~-----W~~d-~~gy~y~~~------ 76 (194)
T COG3145 10 RRQLAPGAVILPGFL-LLTQGALVAALLFLLSQAPWFRPRRTPYGKPMSVPRLLG-----WVTD-RRGYRYSLR------ 76 (194)
T ss_pred cccCCCCeEEEeccc-ccchHHHHHHHHHhcccCcccceeecCCCcEeeeeeccc-----eecc-ccccccccc------
Confidence 445678999999999 555555655444 67888889999999999987321 1222 122444310
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCC--CCEEEEEc-CceeeeeeeccCC
Q 006789 293 GTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFG--RPVCILFL-TECDMTFGRMIGI 369 (631)
Q Consensus 293 g~~~~~~~ePIP~~Lq~LidRLv~~~ll~~~PNqcLIN~Y~pGdgI~PHvDep~FG--~PIvsLSL-S~cvM~Fgr~~~~ 369 (631)
......+||.++.-..+...+.+.....+++||||+|++|+.|+||+|...++ .+|++||| +.|+|.|++...
T Consensus 77 ---~p~~~~p~p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~~~~v~slSLg~~~~F~~~~~~r- 152 (194)
T COG3145 77 ---SPLTGKPWPPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRRR- 152 (194)
T ss_pred ---ccCCCCCCCccHHHHHHHHHHhcCCCCChhheeEEeccCCCccccccccccccCCCceEEEecCCCeEEEeccccC-
Confidence 12334455544433333333344455788999999999999999999765554 37999999 999999998642
Q ss_pred CCCCCCcceEEEEecCCcEEEecccccccccccccCC---CCCeEEE
Q 006789 370 DHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSI---RKQRILV 413 (631)
Q Consensus 370 d~~gd~~~~~~L~L~~GSLLVMsGeAR~~WkHaIp~~---r~rRISL 413 (631)
.....++.|++||||||.|.+|+.|.|.||+. ...||||
T Consensus 153 -----~~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~~~~~~~Rinl 194 (194)
T COG3145 153 -----RGPGLRLRLEHGDVVVMGGPSRLAWHHIIPKTSRLTGQRINL 194 (194)
T ss_pred -----CCCceeEEecCCCEEEecCCccccccccccccccCCcccccC
Confidence 23478999999999999999999999999993 3477775
No 7
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=99.80 E-value=2.2e-20 Score=186.92 Aligned_cols=179 Identities=20% Similarity=0.324 Sum_probs=137.5
Q ss_pred cCCceEEecCCCCHHHHHHHHHHHHhhHh----cCCceeecCceEEecCCcccCCCceeEecCCcccCCCCCcccCCCCC
Q 006789 220 VVDGLKLYEEVSGNSEVSKLVSLVNDLRT----AGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTS 295 (631)
Q Consensus 220 vVpGL~y~pdFLS~eEe~kLLs~I~el~~----sgRR~qlyGkty~~pRr~mkg~gReviq~G~~Y~Ys~~e~~n~~g~~ 295 (631)
.+|||.+++||||.+|+++|+..|+.++| +|||.|.||..++++++.+|
T Consensus 70 p~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klk--------------------------- 122 (306)
T KOG3959|consen 70 PIPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLK--------------------------- 122 (306)
T ss_pred ccCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhc---------------------------
Confidence 47999999999999999999999997665 78999999999999877543
Q ss_pred CCCCCCCCcHHHHHHHHHHHhCccCC--CCCCEEEEeccCCC--CCCCCCCCCCC-CCCCEEEE-EcCceeeeeeeccC-
Q 006789 296 RDRRIEPIPSLLQDVIDRLVGLQIMT--VKPDSCIVDVFNEG--DHSQPHISPSW-FGRPVCIL-FLTECDMTFGRMIG- 368 (631)
Q Consensus 296 ~~~~~ePIP~~Lq~LidRLv~~~ll~--~~PNqcLIN~Y~pG--dgI~PHvDep~-FG~PIvsL-SLS~cvM~Fgr~~~- 368 (631)
....-.||.+...|..||.+..++. ..|.+|.+ +|.|- ..|.||+|+.| +|..++++ .|++.++.+-.++-
T Consensus 123 -t~~F~G~P~~~~~v~rrm~~yp~l~gfqp~EqCnL-eYep~kgsaIdpH~DD~WiWGeRlv~~n~l~d~vl~lc~~e~~ 200 (306)
T KOG3959|consen 123 -TDTFVGMPEYADMVLRRMSEYPVLKGFQPFEQCNL-EYEPVKGSAIDPHQDDMWIWGERLVRSNRLFDFVLKLCSKECL 200 (306)
T ss_pred -cCcccCCchHHHHHHHHhhccchhhccCcHHHcCc-ccccccCCccCccccchhhhhhheeehhhccHHHHHhhhhhhh
Confidence 1245688999999999997665553 68899999 57764 45899999987 57767664 33444444432110
Q ss_pred -----------CCCC---------CC----Cc-ceEEEEecCCcEEEecccccccccccccC--CCCCeEEEEeeeccCC
Q 006789 369 -----------IDHP---------GD----YR-GTLRLSVAPGSLLVMQGKSADIAKHAISS--IRKQRILVTFTKSQPK 421 (631)
Q Consensus 369 -----------~d~~---------gd----~~-~~~~L~L~~GSLLVMsGeAR~~WkHaIp~--~r~rRISLTFRrv~p~ 421 (631)
+.++ ++ .. -.+.|.|+++|||||.|+|||.|+|+|-. ++++||.+|||...+.
T Consensus 201 ~sg~~nL~~~~s~~~e~l~~~li~~s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vlr~hi~~RRvcvt~RE~~~~ 280 (306)
T KOG3959|consen 201 ASGIINLNTNFSESNEFLSINLINGSVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVLRHHIRGRRVCVTMREAAKD 280 (306)
T ss_pred ccceeeeccCccccccccchhhcccchhhhccceEEEeecCcceeEEeechhHhhHHHHHHHHhhhhceeeeeHHhhhHh
Confidence 0011 00 11 25899999999999999999999999998 8999999999999877
Q ss_pred CCCCCC
Q 006789 422 KLTPTD 427 (631)
Q Consensus 422 ~~~~~d 427 (631)
.....+
T Consensus 281 f~~Gg~ 286 (306)
T KOG3959|consen 281 FAEGGE 286 (306)
T ss_pred hccchh
Confidence 644443
No 8
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=97.79 E-value=0.00027 Score=72.10 Aligned_cols=150 Identities=17% Similarity=0.256 Sum_probs=86.2
Q ss_pred eEEecCCCCHHHHHHHHHHHHhhHhcCCceeecCceEEecCCcccCCCceeEecCCcccCCCCCcccCCCCCCCCCCCCC
Q 006789 224 LKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEPI 303 (631)
Q Consensus 224 L~y~pdFLS~eEe~kLLs~I~el~~sgRR~qlyGkty~~pRr~mkg~gReviq~G~~Y~Ys~~e~~n~~g~~~~~~~ePI 303 (631)
+..++++||++|+++|.+.++...|.--+..- |.. .+.+|. | .+...-.++
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~ta-G~~----~~~vKn--------------------N----~ql~~d~~~ 52 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVTA-GAQ----AAQVKN--------------------N----QQLPEDSPL 52 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcCc-Ccc----chhccc--------------------c----cccCCCCHH
Confidence 56799999999999999999887664211110 100 000110 0 011111111
Q ss_pred cHHH-HHHHHHHHhCccC-----CCCCCEEEEeccCCCCCCCCCCCCCCCC--------CCEE--EEEcCce------ee
Q 006789 304 PSLL-QDVIDRLVGLQIM-----TVKPDSCIVDVFNEGDHSQPHISPSWFG--------RPVC--ILFLTEC------DM 361 (631)
Q Consensus 304 P~~L-q~LidRLv~~~ll-----~~~PNqcLIN~Y~pGdgI~PHvDep~FG--------~PIv--sLSLS~c------vM 361 (631)
-..| +.|.++|....++ +.+....++|.|.+|+.-++|+|..... +..+ +|.|++. .+
T Consensus 53 a~~l~~~i~~~L~~~~l~~sa~lp~~i~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl 132 (226)
T PRK05467 53 ARELGNLILDALTRNPLFFSAALPRKIHPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGEL 132 (226)
T ss_pred HHHHHHHHHHHHhcCchhhhhccccccccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCce
Confidence 1223 2333344322222 2333356899999999999999875331 1122 2344322 22
Q ss_pred eeeeccCCCCCCCCcceEEEEecCCcEEEecccccccccccccC-CCCCeEEEEe
Q 006789 362 TFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISS-IRKQRILVTF 415 (631)
Q Consensus 362 ~Fgr~~~~d~~gd~~~~~~L~L~~GSLLVMsGeAR~~WkHaIp~-~r~rRISLTF 415 (631)
.|.. ..+...|.++.|++||+... ..|.+.+ .++.|++++|
T Consensus 133 ~~~~---------~~g~~~Vkp~aG~~vlfps~----~lH~v~pVt~G~R~~~~~ 174 (226)
T PRK05467 133 VIED---------TYGEHRVKLPAGDLVLYPST----SLHRVTPVTRGVRVASFF 174 (226)
T ss_pred EEec---------CCCcEEEecCCCeEEEECCC----CceeeeeccCccEEEEEe
Confidence 2211 11357899999999999964 5599999 7889999998
No 9
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=97.59 E-value=0.0023 Score=61.22 Aligned_cols=161 Identities=15% Similarity=0.225 Sum_probs=90.8
Q ss_pred CceEEecCCCCHHHHHHHHHHHHhhHhcCCceeec-CceEEecCCcccCCCceeEecCCcccCCCCCcccCCCCCCCCCC
Q 006789 222 DGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQ-GPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRI 300 (631)
Q Consensus 222 pGL~y~pdFLS~eEe~kLLs~I~el~~sgRR~qly-Gkty~~pRr~mkg~gReviq~G~~Y~Ys~~e~~n~~g~~~~~~~ 300 (631)
|++.++++||+++|+++|++..+..-+ +..+. +..- ... ....+. ..+.. ...
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~---~~~~~~~~~~--~~~---~~~~R~-~~~~~-----------------l~~ 54 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGW---RGEVTRGDTN--PNH---DSKYRQ-SNGTW-----------------LEL 54 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcc---cceeecCCCC--ccc---cCCCEe-eccee-----------------cCC
Confidence 578999999999999999998876443 11111 1000 000 000000 00000 000
Q ss_pred CCCcHHHHHHHHHHHhCccCC----CCCCEEEEeccCCCCCCCCCCCCCCCC---CCEEEE--EcCc----eeeeeeecc
Q 006789 301 EPIPSLLQDVIDRLVGLQIMT----VKPDSCIVDVFNEGDHSQPHISPSWFG---RPVCIL--FLTE----CDMTFGRMI 367 (631)
Q Consensus 301 ePIP~~Lq~LidRLv~~~ll~----~~PNqcLIN~Y~pGdgI~PHvDep~FG---~PIvsL--SLS~----cvM~Fgr~~ 367 (631)
..-.+....|.+|+...-.+. .....+.|..|.+|+...+|.|..... ..++++ -|++ -.+.|....
T Consensus 55 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~ 134 (178)
T smart00702 55 LKGDLVIERIRQRLADFLGLLRGLPLSAEDAQVARYGPGGHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLG 134 (178)
T ss_pred CCCCHHHHHHHHHHHHHHCCCchhhccCcceEEEEECCCCcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCC
Confidence 001234455555554321122 345677888999999999999875432 445553 3432 234443211
Q ss_pred CCCCCCCCcceEEEEecCCcEEEecccccccccccccCCC-CCeEEEEee
Q 006789 368 GIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIR-KQRILVTFT 416 (631)
Q Consensus 368 ~~d~~gd~~~~~~L~L~~GSLLVMsGeAR~~WkHaIp~~r-~rRISLTFR 416 (631)
.....+|.-..|++|++...-. ...|++.++. +.|++|+..
T Consensus 135 -------~~~~~~v~P~~G~~v~f~~~~~-~~~H~v~pv~~G~r~~~~~W 176 (178)
T smart00702 135 -------LMVCATVKPKKGDLLFFPSGRG-RSLHGVCPVTRGSRWAITGW 176 (178)
T ss_pred -------CccceEEeCCCCcEEEEeCCCC-CccccCCcceeCCEEEEEEE
Confidence 0124688889999999874321 4669999955 799999863
No 10
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=97.56 E-value=5.8e-05 Score=65.30 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=46.3
Q ss_pred CCEEEEeccC---CCCCCCCCCCCCCCCCCEEEEEc--CceeeeeeeccCCCCCCCCcceEEEEecCCcEEEecc-----
Q 006789 324 PDSCIVDVFN---EGDHSQPHISPSWFGRPVCILFL--TECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQG----- 393 (631)
Q Consensus 324 PNqcLIN~Y~---pGdgI~PHvDep~FG~PIvsLSL--S~cvM~Fgr~~~~d~~gd~~~~~~L~L~~GSLLVMsG----- 393 (631)
++.|.||+|. .+.++.+|.|.. ..++++.+ ...-+.|.... ..+.+...++.++|+-|
T Consensus 1 ~~~~~~~~Y~~~~~~~~~~~H~D~~---~~~~Til~~~~~~gL~~~~~~---------~~~~v~~~~~~~~v~~G~~l~~ 68 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGVGIGPHTDDE---DGLLTILFQDEVGGLQVRDDG---------EWVDVPPPPGGFIVNFGDALEI 68 (98)
T ss_dssp --EEEEEEE-SCCGCEEEEEEEES-----SSEEEEEETSTS-EEEEETT---------EEEE----TTCEEEEEBHHHHH
T ss_pred CCEEEEEECCCcccCCceeCCCcCC---CCeEEEEecccchheeccccc---------cccCccCccceeeeeceeeeec
Confidence 4789999999 667889999864 34565544 56677776542 23444444445555555
Q ss_pred ---cccccccccccCCC-CCeEEEEeee
Q 006789 394 ---KSADIAKHAISSIR-KQRILVTFTK 417 (631)
Q Consensus 394 ---eAR~~WkHaIp~~r-~rRISLTFRr 417 (631)
..+..+.|+|.... +.|+||||+.
T Consensus 69 ~t~g~~~~~~HrV~~~~~~~R~s~~~f~ 96 (98)
T PF03171_consen 69 LTNGRYPATLHRVVPPTEGERYSLTFFL 96 (98)
T ss_dssp HTTTSS----EEEE--STS-EEEEEEEE
T ss_pred ccCCccCCceeeeEcCCCCCEEEEEEEE
Confidence 48889999999974 9999999973
No 11
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=96.94 E-value=0.0009 Score=72.02 Aligned_cols=119 Identities=16% Similarity=0.137 Sum_probs=78.1
Q ss_pred ecCCcccCCCCCcccCCCCCCCCCCCCCcHHHHHH-HHHHHhCccC-C-CCCCEEEEeccCCCCCCCCCCCCCCCC--CC
Q 006789 276 QLGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDV-IDRLVGLQIM-T-VKPDSCIVDVFNEGDHSQPHISPSWFG--RP 350 (631)
Q Consensus 276 q~G~~Y~Ys~~e~~n~~g~~~~~~~ePIP~~Lq~L-idRLv~~~ll-~-~~PNqcLIN~Y~pGdgI~PHvDep~FG--~P 350 (631)
.+|..|++...+.- +....+...++++|..+ .++.....-+ . ..++.+|+|||..++-++-|.|..++| .|
T Consensus 169 T~G~~~dw~s~~~~----~~~s~k~~~~~~~ll~~~~~~~~~a~~~~~~~~~~Gli~nYlsi~~tl~ih~d~reld~~~p 244 (378)
T KOG2731|consen 169 TLGNQYDWSSKDIF----IFLSKKHYNIKPSLLGLLREKVKAAKGFSHIVIRPGLIKNYLSIDDTLGIHLDCRELDLSKP 244 (378)
T ss_pred ccccccCCcccccc----ccccccCCCCChHHhhhhhhhhhhhcCccceeccCcceeeecccCcEEEEEeehhhcccCCc
Confidence 35666666543311 00122344556666544 4443221111 1 345668999999999999999887655 57
Q ss_pred EEEEEc-CceeeeeeeccCCCCCCCCcceEEEEecCCcEEEecccccccccccccC
Q 006789 351 VCILFL-TECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISS 405 (631)
Q Consensus 351 IvsLSL-S~cvM~Fgr~~~~d~~gd~~~~~~L~L~~GSLLVMsGeAR~~WkHaIp~ 405 (631)
+++.|| -+|.+..+-.... .....+.|..|+.++|.|.+| ...|||+.
T Consensus 245 f~s~s~g~~ai~lLg~m~l~------e~p~p~~lrsGdv~im~Gfsr-lv~haIp~ 293 (378)
T KOG2731|consen 245 FYSPSLGQGAILLLGMMCLG------ENPDPMTLRSGDVVIMDGFSR-LVEHAIPE 293 (378)
T ss_pred cccccccccceeeecccccC------CCCCccccccCceEeecchHH-HHhhccch
Confidence 778888 6888888754321 225678999999999999988 68899993
No 12
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=95.46 E-value=0.0079 Score=52.11 Aligned_cols=81 Identities=20% Similarity=0.358 Sum_probs=52.4
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCCEEEE--EcCce-------eeeeeeccCCCCCCCCcceEEEE-----ecCCcEEEec
Q 006789 327 CIVDVFNEGDHSQPHISPSWFGRPVCIL--FLTEC-------DMTFGRMIGIDHPGDYRGTLRLS-----VAPGSLLVMQ 392 (631)
Q Consensus 327 cLIN~Y~pGdgI~PHvDep~FG~PIvsL--SLS~c-------vM~Fgr~~~~d~~gd~~~~~~L~-----L~~GSLLVMs 392 (631)
|-|+.|.+|+.+.||.|.......++++ .|+.. .+.|.... + .+ .....+. ...|+|+++.
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~--~-~~--~~~~~~~~~~~~p~~g~~v~F~ 75 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSK--D-SD--DVSREVEDFDIVPKPGRLVIFP 75 (100)
T ss_dssp -EEEEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS----TS--STCEEEGGGSEE-BTTEEEEEE
T ss_pred CEEEEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccc--c-CC--CcceEEEeccccCCCCEEEEEe
Confidence 5689999999999999985444444443 45422 34444321 0 00 1123333 9999999999
Q ss_pred ccccccccccccCC--CCCeEEEEe
Q 006789 393 GKSADIAKHAISSI--RKQRILVTF 415 (631)
Q Consensus 393 GeAR~~WkHaIp~~--r~rRISLTF 415 (631)
+ ....|++.++ ..+|++||+
T Consensus 76 ~---~~~~H~v~~v~~~~~R~~l~~ 97 (100)
T PF13640_consen 76 S---DNSLHGVTPVGEGGRRYSLTF 97 (100)
T ss_dssp S---CTCEEEEEEE-EESEEEEEEE
T ss_pred C---CCCeecCcccCCCCCEEEEEE
Confidence 9 5677999996 789999987
No 13
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=94.30 E-value=0.29 Score=49.45 Aligned_cols=83 Identities=22% Similarity=0.377 Sum_probs=52.5
Q ss_pred EEeccCCCCCCCCCCCCCCCC-CCEE--EEEc-CceeeeeeeccCCCC-----CCCCcceEEEEecCCcEEEeccccccc
Q 006789 328 IVDVFNEGDHSQPHISPSWFG-RPVC--ILFL-TECDMTFGRMIGIDH-----PGDYRGTLRLSVAPGSLLVMQGKSADI 398 (631)
Q Consensus 328 LIN~Y~pGdgI~PHvDep~FG-~PIv--sLSL-S~cvM~Fgr~~~~d~-----~gd~~~~~~L~L~~GSLLVMsGeAR~~ 398 (631)
+-|.|.+|+..++|+|...-. .|.. .++- -.|++.|...+..+. .+-| +.+.|.|+.|||++..+.+-
T Consensus 85 ~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtY-g~h~VklPAGdLVlypStSl-- 161 (229)
T COG3128 85 LFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTY-GNHRVKLPAGDLVLYPSTSL-- 161 (229)
T ss_pred hhhhccCCCcccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEeccc-cceEEeccCCCEEEcccccc--
Confidence 578999999999999864211 1111 1111 134444433221110 0112 46899999999999998864
Q ss_pred ccccccC-CCCCeEEEEe
Q 006789 399 AKHAISS-IRKQRILVTF 415 (631)
Q Consensus 399 WkHaIp~-~r~rRISLTF 415 (631)
|.|.+ +|+.|+-.-|
T Consensus 162 --H~VtPVTRg~R~asff 177 (229)
T COG3128 162 --HEVTPVTRGERFASFF 177 (229)
T ss_pred --eeccccccCceEEEee
Confidence 88877 7899988766
No 14
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=93.66 E-value=0.33 Score=50.56 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=31.4
Q ss_pred ceEEEEecCCcEEEecccccccccccccCCCCCeEEEEee
Q 006789 377 GTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFT 416 (631)
Q Consensus 377 ~~~~L~L~~GSLLVMsGeAR~~WkHaIp~~r~rRISLTFR 416 (631)
..+.++|+.||++.|-++.....+|+|-.-..+|+|=|-|
T Consensus 210 P~L~vPL~sgd~Y~Mldd~N~tHqH~VlaG~~~RfSSTHR 249 (253)
T PF12933_consen 210 PGLAVPLRSGDCYYMLDDFNATHQHCVLAGSSARFSSTHR 249 (253)
T ss_dssp -EEEEEE-TT-EEEE-TTHHHHEEEEEE--SS-EEEEEEE
T ss_pred CeeEEeccCCCeEEEccccchhhHHHHhcCCCccccccce
Confidence 4699999999999999999999999999988889999987
No 15
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=93.37 E-value=1.4 Score=46.46 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=31.8
Q ss_pred eEEEEecCCcEEEecccccccccccccC-C--CCCeEEEEeeeccCCC
Q 006789 378 TLRLSVAPGSLLVMQGKSADIAKHAISS-I--RKQRILVTFTKSQPKK 422 (631)
Q Consensus 378 ~~~L~L~~GSLLVMsGeAR~~WkHaIp~-~--r~rRISLTFRrv~p~~ 422 (631)
.+.+.|++|++++|.+.+- |+=-+ . ..+|+.+++|.+....
T Consensus 208 ~v~~~lkaGd~~~f~~~t~----HgS~~N~S~~~~R~~~~~ry~~~~~ 251 (288)
T TIGR01762 208 AVPMQMKAGQFIIFWSTLM----HASYPNSGESQMRMGFASRYVPSFV 251 (288)
T ss_pred eeeeeeCCceEEEECCCce----ecCCCCCCCCceEEEEEEEEcCCCc
Confidence 4789999999999999755 66555 2 3469999999886533
No 16
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=92.99 E-value=1.9 Score=46.35 Aligned_cols=168 Identities=14% Similarity=0.273 Sum_probs=93.2
Q ss_pred cccCCceEEecCCCCHHHHHHHHHHHHhhHhcCCceeec----CceEEecCCcccCCCceeEecCCcccCCCCCcccCCC
Q 006789 218 VNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQ----GPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGG 293 (631)
Q Consensus 218 VnvVpGL~y~pdFLS~eEe~kLLs~I~el~~sgRR~qly----Gkty~~pRr~mkg~gReviq~G~~Y~Ys~~e~~n~~g 293 (631)
++.=|-+.+|+||||.+|++.|++.....- ++-... |+...-.. |. ..+..+
T Consensus 50 lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l---~~S~v~~~~~g~~~~s~~-------RT--S~~~~l------------ 105 (310)
T PLN00052 50 VSWQPRIFVYKGFLSDAECDHLVKLAKKKI---QRSMVADNKSGKSVMSEV-------RT--SSGMFL------------ 105 (310)
T ss_pred ecCCCCEEEECCcCCHHHHHHHHHhccccc---ccceeecCCCCccccCCC-------EE--ecceee------------
Confidence 344478999999999999999998765311 111111 11110000 00 001000
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhCccCCC-CCCEEEEeccCCCCCCCCCCCCC-------CCCCCEEEEEc--Cce----
Q 006789 294 TSRDRRIEPIPSLLQDVIDRLVGLQIMTV-KPDSCIVDVFNEGDHSQPHISPS-------WFGRPVCILFL--TEC---- 359 (631)
Q Consensus 294 ~~~~~~~ePIP~~Lq~LidRLv~~~ll~~-~PNqcLIN~Y~pGdgI~PHvDep-------~FG~PIvsLSL--S~c---- 359 (631)
. ..+ -+.+..|.+|+..+..++. .-..+-|=.|..|+...+|.|-. .-|+.++|+.+ ++.
T Consensus 106 ---~-~~~--dpvv~~I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GG 179 (310)
T PLN00052 106 ---D-KRQ--DPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGG 179 (310)
T ss_pred ---c-CCC--CHHHHHHHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCC
Confidence 0 001 2467888888876655552 23345555699999999999831 12456777543 321
Q ss_pred eeeeeeccCCC-CC-C-----CCcceEEEEecCCcEEEec-----ccccccccccccC-CCCCeEEEEe
Q 006789 360 DMTFGRMIGID-HP-G-----DYRGTLRLSVAPGSLLVMQ-----GKSADIAKHAISS-IRKQRILVTF 415 (631)
Q Consensus 360 vM~Fgr~~~~d-~~-g-----d~~~~~~L~L~~GSLLVMs-----GeAR~~WkHaIp~-~r~rRISLTF 415 (631)
.-.|-...... .+ + -.+..+.|.=..|+.|++- |..-..-.|+.++ +.+.++.+|.
T Consensus 180 eT~FP~~~~~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atk 248 (310)
T PLN00052 180 ETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPK 248 (310)
T ss_pred ceecCCcccccccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEE
Confidence 12232211000 00 0 0012478888999999975 3444456899888 4678888884
No 17
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=89.05 E-value=2 Score=51.23 Aligned_cols=9 Identities=0% Similarity=0.010 Sum_probs=4.5
Q ss_pred CCccchhhh
Q 006789 12 ADDPFVMWL 20 (631)
Q Consensus 12 ~~d~~~~w~ 20 (631)
+||-+|+|+
T Consensus 116 ek~kmis~~ 124 (1102)
T KOG1924|consen 116 EKRKMISQY 124 (1102)
T ss_pred HHHHHHHHH
Confidence 344455554
No 18
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=88.08 E-value=3 Score=49.79 Aligned_cols=6 Identities=50% Similarity=1.066 Sum_probs=2.4
Q ss_pred CCceEE
Q 006789 221 VDGLKL 226 (631)
Q Consensus 221 VpGL~y 226 (631)
|+||..
T Consensus 293 v~gl~~ 298 (1102)
T KOG1924|consen 293 VEGLDF 298 (1102)
T ss_pred HHHHhc
Confidence 334433
No 19
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=83.90 E-value=3.6 Score=40.98 Aligned_cols=109 Identities=18% Similarity=0.325 Sum_probs=68.2
Q ss_pred CCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCC---CEEE-EEcCceeeeeeecc--CCC-CCC
Q 006789 301 EPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGR---PVCI-LFLTECDMTFGRMI--GID-HPG 373 (631)
Q Consensus 301 ePIP~~Lq~LidRLv~~~ll~~~PNqcLIN~Y~pGdgI~PHvDep~FG~---PIvs-LSLS~cvM~Fgr~~--~~d-~~g 373 (631)
..+|+.+.+.++++-+.+ ..+|..+|+ .|.+|++..-|+| .||+ |+-. +.||+---+|.--+ -.+ .+.
T Consensus 41 ~~yP~~~~~fl~~ch~aG--Q~rptplll-rY~~gdyn~LHqd--lyGe~vFPlQvv~lLs~Pg~DftGGEFVltEQrPR 115 (173)
T PF09859_consen 41 ARYPATLAEFLARCHAAG--QTRPTPLLL-RYGPGDYNCLHQD--LYGEHVFPLQVVILLSEPGEDFTGGEFVLTEQRPR 115 (173)
T ss_pred CCCCccHHHHHHHHHhcc--CCCCchhhh-eeCCCCccccccC--CCCCcccCeEEEEEcCCCCCcccCceEEEEEecCC
Confidence 467888888888875432 256666555 7999999999997 3443 4433 34554332332110 000 011
Q ss_pred CCcceEEEEecCCcEEEec----------ccccccccccccCC-CCCeEEEE
Q 006789 374 DYRGTLRLSVAPGSLLVMQ----------GKSADIAKHAISSI-RKQRILVT 414 (631)
Q Consensus 374 d~~~~~~L~L~~GSLLVMs----------GeAR~~WkHaIp~~-r~rRISLT 414 (631)
.-....-|.|..|+.+|+. |.-|-.-+|+|..+ .++|..|.
T Consensus 116 ~QSR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLg 167 (173)
T PF09859_consen 116 MQSRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLG 167 (173)
T ss_pred ccCccccCCcCCCCEEEEecCCCCcCCCccceecccccccccccccceEEEE
Confidence 1112466899999999984 66777889999995 46777664
No 20
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=79.58 E-value=3.7 Score=36.30 Aligned_cols=84 Identities=18% Similarity=0.326 Sum_probs=40.8
Q ss_pred EEEeccCCCCCCCCCCC-CCCCCCCEEEEEc--CceeeeeeeccCC----------CCCCCCcceEEEEecCCcEEEecc
Q 006789 327 CIVDVFNEGDHSQPHIS-PSWFGRPVCILFL--TECDMTFGRMIGI----------DHPGDYRGTLRLSVAPGSLLVMQG 393 (631)
Q Consensus 327 cLIN~Y~pGdgI~PHvD-ep~FG~PIvsLSL--S~cvM~Fgr~~~~----------d~~gd~~~~~~L~L~~GSLLVMsG 393 (631)
|=+|.|+.|+...+|.- ...+. -|.=|.+ ....+.|...... +..........+..+.|+|||+-+
T Consensus 2 ~W~ni~~~g~~~~~H~H~~s~~S-gVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs 80 (101)
T PF13759_consen 2 SWANIYRKGGYNEPHNHPNSWLS-GVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPS 80 (101)
T ss_dssp EEEEEE-TT--EEEE--TT-SEE-EEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEET
T ss_pred eeEEEeCCCCccCceECCCcCEE-EEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCC
Confidence 34688999999888883 33321 1222333 2234566543210 001112346889999999999997
Q ss_pred cccccccccccC--CCCCeEEEEe
Q 006789 394 KSADIAKHAISS--IRKQRILVTF 415 (631)
Q Consensus 394 eAR~~WkHaIp~--~r~rRISLTF 415 (631)
-.. |++.+ ....||||.|
T Consensus 81 ~l~----H~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 81 WLW----HGVPPNNSDEERISISF 100 (101)
T ss_dssp TSE----EEE----SSS-EEEEEE
T ss_pred CCE----EeccCcCCCCCEEEEEc
Confidence 644 88888 4468999987
No 21
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=68.52 E-value=6.4 Score=38.77 Aligned_cols=35 Identities=23% Similarity=0.517 Sum_probs=31.3
Q ss_pred eEEEEecCCcEEEecccccccccccccCCC------CCeEEEEe
Q 006789 378 TLRLSVAPGSLLVMQGKSADIAKHAISSIR------KQRILVTF 415 (631)
Q Consensus 378 ~~~L~L~~GSLLVMsGeAR~~WkHaIp~~r------~rRISLTF 415 (631)
-+.|.+.+||+|++.|. ...|++.++. ..||||.|
T Consensus 127 g~~~~~~~GtVl~~~~~---~~~Hgvtpv~~~~~~~~~R~slvf 167 (171)
T PF12851_consen 127 GVAFAYQPGTVLIFCAK---RELHGVTPVESPNRNHGTRISLVF 167 (171)
T ss_pred CEEEecCCCcEEEEccc---ceeeecCcccCCCCCCCeEEEEEE
Confidence 58899999999999987 5789999976 89999998
No 22
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=65.34 E-value=45 Score=33.89 Aligned_cols=87 Identities=15% Similarity=0.238 Sum_probs=53.5
Q ss_pred CCEEEEeccCCCCCCCCCCCCC-CCCCCEEEEEc--CceeeeeeeccCC----------CCCCCCcceEEEEecCCcEEE
Q 006789 324 PDSCIVDVFNEGDHSQPHISPS-WFGRPVCILFL--TECDMTFGRMIGI----------DHPGDYRGTLRLSVAPGSLLV 390 (631)
Q Consensus 324 PNqcLIN~Y~pGdgI~PHvDep-~FG~PIvsLSL--S~cvM~Fgr~~~~----------d~~gd~~~~~~L~L~~GSLLV 390 (631)
+..|=+|.+++|+....|.-+. ++. .++=|+. ....+.|...... ..+......+.+.-+.|.|||
T Consensus 95 i~~~W~ni~~~Gg~h~~H~Hp~~~lS-gvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvl 173 (201)
T TIGR02466 95 IQKAWVNILPQGGTHSPHLHPGSVIS-GTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLL 173 (201)
T ss_pred EeeEeEEEcCCCCccCceECCCceEE-EEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEE
Confidence 4567789999999888888443 221 1222444 2334555432110 000011123567779999999
Q ss_pred ecccccccccccccC--CCCCeEEEEe
Q 006789 391 MQGKSADIAKHAISS--IRKQRILVTF 415 (631)
Q Consensus 391 MsGeAR~~WkHaIp~--~r~rRISLTF 415 (631)
+-.-.+ |++.+ ..+.||||.|
T Consensus 174 FPS~L~----H~v~p~~~~~~RISiSF 196 (201)
T TIGR02466 174 FESWLR----HEVPPNESEEERISVSF 196 (201)
T ss_pred ECCCCc----eecCCCCCCCCEEEEEE
Confidence 988755 88888 4579999998
No 23
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=61.01 E-value=39 Score=36.32 Aligned_cols=166 Identities=14% Similarity=0.138 Sum_probs=83.3
Q ss_pred cccCCceEEecCCCCHHHHHHHHHHHHh-hHhcCCceeecCceEEecCCcccCCCceeEecCCcccCCCCCcccCCCCCC
Q 006789 218 VNVVDGLKLYEEVSGNSEVSKLVSLVND-LRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSR 296 (631)
Q Consensus 218 VnvVpGL~y~pdFLS~eEe~kLLs~I~e-l~~sgRR~qlyGkty~~pRr~mkg~gReviq~G~~Y~Ys~~e~~n~~g~~~ 296 (631)
+.--|.+.+|.|||+.+|++.|.++-.. +. ..++...+.+-.... . .+ ..+.++.
T Consensus 93 lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~--~stv~~~~~~~~~~~-----------~-----~~-----R~S~~t~- 148 (289)
T KOG1591|consen 93 LSWDPRVVLYHDFLSDEECDHLISLAKPKLE--RSTVVADKGTGHSTT-----------S-----AV-----RTSSGTF- 148 (289)
T ss_pred cccCCceEeehhcCCHHHHHHHHHhhhhhhh--ceeeeccCCcccccc-----------e-----ee-----EecceeE-
Confidence 4445789999999999999999877552 22 111111110000000 0 00 0000110
Q ss_pred CCCCCCCcHHHHHHHHHHHhCccCC-CCCCEEEEeccCCCCCCCCCCCCCC-----------CCCCEEEEEcCceeeeee
Q 006789 297 DRRIEPIPSLLQDVIDRLVGLQIMT-VKPDSCIVDVFNEGDHSQPHISPSW-----------FGRPVCILFLTECDMTFG 364 (631)
Q Consensus 297 ~~~~ePIP~~Lq~LidRLv~~~ll~-~~PNqcLIN~Y~pGdgI~PHvDep~-----------FG~PIvsLSLS~cvM~Fg 364 (631)
... .=.+.+..|-+|+.....++ ..-...-|=.|..|+.-.+|.|--. .|+.|+++.+ .+.
T Consensus 149 -l~~-~~~~~~~~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~-----yls 221 (289)
T KOG1591|consen 149 -LPD-GASPVVSRIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVLM-----YLS 221 (289)
T ss_pred -ecC-CCCHHHHHHHHHHHhccCCCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEEE-----Eec
Confidence 011 12346677777776554444 3445555555999999999985321 3456665433 222
Q ss_pred eccCCCCCC--CCcceEEEEecCCcEEEe-----cccccccccccccC-CCCCeEEEE
Q 006789 365 RMIGIDHPG--DYRGTLRLSVAPGSLLVM-----QGKSADIAKHAISS-IRKQRILVT 414 (631)
Q Consensus 365 r~~~~d~~g--d~~~~~~L~L~~GSLLVM-----sGeAR~~WkHaIp~-~r~rRISLT 414 (631)
........- +...++.|....||.|.. .|+--..=+|+-++ ..+.|++-|
T Consensus 222 ~v~~GG~TvFP~~~~~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~ 279 (289)
T KOG1591|consen 222 DVEQGGETVFPNLGMKPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIAT 279 (289)
T ss_pred ccCCCCcccCCCCCCcccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeee
Confidence 222100000 011124788888998875 22222234677777 344555544
No 24
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=45.31 E-value=1.4e+02 Score=33.47 Aligned_cols=9 Identities=56% Similarity=1.309 Sum_probs=5.7
Q ss_pred eeeCCCCCC
Q 006789 537 VFLPPPGSG 545 (631)
Q Consensus 537 vflp~~gsg 545 (631)
.|.|||.+|
T Consensus 318 affpPP~~~ 326 (498)
T KOG4849|consen 318 AFFPPPQLG 326 (498)
T ss_pred ccCCCCCcC
Confidence 477777654
No 25
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=44.62 E-value=3e+02 Score=31.66 Aligned_cols=32 Identities=9% Similarity=-0.066 Sum_probs=19.6
Q ss_pred hHHHHHHhhhccccchhhhccccchHHHHHHHHHHHHHHhhccc
Q 006789 48 DFAINCIQQRRCNWNSVLHLQQYFSVSEVMLALQQVAWRKQQRS 91 (631)
Q Consensus 48 d~v~~~~~~rr~~w~~vl~mq~~~sv~dv~~~Lqqva~~r~~~~ 91 (631)
|-||+-|..-- ..+.+=+-.||+-.+|.....
T Consensus 49 EdIFGELf~da------------~~f~~R~NSLQ~RIDRL~vkV 80 (518)
T KOG1830|consen 49 EDIFGELFNDA------------NNFNHRANSLQERIDRLAVKV 80 (518)
T ss_pred HHHHHHHHHHh------------hhhhhhhhHHHHHHHHHhhhh
Confidence 34677765433 345566778888888864433
No 26
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=35.29 E-value=1.3e+02 Score=35.05 Aligned_cols=77 Identities=39% Similarity=0.771 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCccccCCCCCCCCceeecCCC--CCCCCCCCCccCCCCCCC--CCCCCCCCCCCCCCC----CCCCCCce
Q 006789 465 IPTTGVLPAPAIRAQIPPTNGVPPIFVSPPV--TPAMPFPAPVPIPPGSTG--WTAAPPRHTPPPPPP----RLPVPGTG 536 (631)
Q Consensus 465 ~p~~~v~p~p~~~~~~~~~~~~qp~f~~~~v--~~~~pf~~~v~~~~~~~~--w~~~~pr~~~~~~~~----r~p~pgtg 536 (631)
.+++.+.|+|+.|+-.|+| |+ +.+.|-+ |+|-|+...| =.+++|-+|||||.| -=|-|=+-
T Consensus 381 ~s~~~~~p~~Pgr~aPp~P----------P~~~ps~~p~~-PpPPPPs~~g~~Pp~apPppPPPPPmPs~gagppPPP~~ 449 (569)
T KOG3671|consen 381 RSRAVSPPAPPGRPAPPPP----------PLGNPSAVPVP-PPPPPPSLPGSAPPSAPPPPPPPPPMPSTGAGPPPPPSA 449 (569)
T ss_pred CCccccCCCCCCCCCCCCC----------CCCCCCCCCCC-CCCCCCcccCCCCCCCCCCCCcCCCCCccCCCCCCCCCc
Q ss_pred eeeCCCCCCCCCCcCc
Q 006789 537 VFLPPPGSGGSSSPRQ 552 (631)
Q Consensus 537 vflp~~gsg~~~~~~~ 552 (631)
-.+||-|.|...++.+
T Consensus 450 ~~~Pp~~aga~aPp~p 465 (569)
T KOG3671|consen 450 PIAPPQGAGAAAPPAP 465 (569)
T ss_pred cCCCCCccCCCCCCCC
No 27
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.72 E-value=1.5e+02 Score=30.55 Aligned_cols=111 Identities=23% Similarity=0.399 Sum_probs=67.5
Q ss_pred CCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCC---CEE-EEEcCc--eeeeeeeccCCC-CC
Q 006789 300 IEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGR---PVC-ILFLTE--CDMTFGRMIGID-HP 372 (631)
Q Consensus 300 ~ePIP~~Lq~LidRLv~~~ll~~~PNqcLIN~Y~pGdgI~PHvDep~FG~---PIv-sLSLS~--cvM~Fgr~~~~d-~~ 372 (631)
..+||..|.+.++++-..+ ..+|.-+|+ .|-+|++-.-|+| .||+ |+- .+.||+ .+|+=+.-.-.+ .+
T Consensus 102 ~~r~P~tlad~L~~CHaAG--Q~RpTpLlL-qYgpgD~NcLHQD--LYGelvFPLQvailLsePg~DfTGGEF~lvEQRP 176 (236)
T COG3826 102 DARYPATLADFLARCHAAG--QVRPTPLLL-QYGPGDYNCLHQD--LYGELVFPLQVAILLSEPGTDFTGGEFVLVEQRP 176 (236)
T ss_pred CCCCchhHHHHHHHHHhcc--CccCCceeE-EecCCccchhhhh--hhhceeeeeeEEEeccCCCCcccCceEEEEeccc
Confidence 3578889988888874322 257777777 5999999999998 4554 322 244543 333311110000 11
Q ss_pred CCCcceEEEEecCCcEEEe----------cccccccccccccCCC-CCe--EEEEe
Q 006789 373 GDYRGTLRLSVAPGSLLVM----------QGKSADIAKHAISSIR-KQR--ILVTF 415 (631)
Q Consensus 373 gd~~~~~~L~L~~GSLLVM----------sGeAR~~WkHaIp~~r-~rR--ISLTF 415 (631)
.......-+.|..|+-+|+ +|..|..-.|++...+ ++| +-|.|
T Consensus 177 R~QSr~~vvpLrqG~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiIF 232 (236)
T COG3826 177 RMQSRPTVVPLRQGDGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGIIF 232 (236)
T ss_pred ccccCCceeeccCCceEEEEeecCcccCccCccccchhcchhhhhcccceeeEEEe
Confidence 1111245688999999987 4677777888888854 344 44444
No 28
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.89 E-value=65 Score=34.97 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=39.9
Q ss_pred eEEEEecCCcEEEecccccccccccccC--CCCCeEEEEeeeccCCCCCCCCCCCCCCCCC
Q 006789 378 TLRLSVAPGSLLVMQGKSADIAKHAISS--IRKQRILVTFTKSQPKKLTPTDGQRLASPGI 436 (631)
Q Consensus 378 ~~~L~L~~GSLLVMsGeAR~~WkHaIp~--~r~rRISLTFRrv~p~~~~~~d~~~~~~p~~ 436 (631)
.+.+.|++||+|++.|... |+-.. ...+|+.|||+-+..- ....++.+|.++.+
T Consensus 192 ~~pv~lekGDallF~~~L~----HaA~aNrT~~~R~A~~~~~~~~~-~~~~~n~~l~~~~~ 247 (299)
T COG5285 192 AVPVELEKGDALLFNGSLW----HAAGANRTSADRVALTLQFTVSF-VKQQVNQVLSPPRE 247 (299)
T ss_pred ceeeeecCCCEEEEcchhh----hhhhcCCCCcccceEEEEEeecc-ccccCCcccCCCce
Confidence 6889999999999999865 55555 4479999999988764 34556655555433
No 29
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=29.01 E-value=1.8e+02 Score=31.76 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=50.3
Q ss_pred CEEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cc-eeeeeeeccCCCCCCCCcceEEEEecCCcEEEeccccc
Q 006789 325 DSCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSA 396 (631)
Q Consensus 325 NqcLIN~Y~pG------dgI~PHvDep~FG~PIvsLSL-S~-cvM~Fgr~~~~d~~gd~~~~~~L~L~~GSLLVMsGeAR 396 (631)
...-+|+|.+- -++++|.|- | ++||.+ .+ -=+...+ .| +=+.|.-.+|+++|.-|+.=
T Consensus 200 ~~lRl~~YPp~~~~~~~~g~~aHTD~---g--~lTlL~Qd~v~GLQV~~------~g---~Wv~V~p~pgalVVNiGD~L 265 (341)
T PLN02984 200 GVIRVYRYPQCSNEAEAPGMEVHTDS---S--VISILNQDEVGGLEVMK------DG---EWFNVKPIANTLVVNLGDMM 265 (341)
T ss_pred ceEEEEeCCCCCCcccccCccCccCC---C--ceEEEEeCCCCCeeEee------CC---ceEECCCCCCeEEEECChhh
Confidence 35678999652 256788873 3 445444 11 1122211 11 23777888999999999988
Q ss_pred cccc--------ccc--cCCCCCeEEEEeee
Q 006789 397 DIAK--------HAI--SSIRKQRILVTFTK 417 (631)
Q Consensus 397 ~~Wk--------HaI--p~~r~rRISLTFRr 417 (631)
..|. |.| +.....|+||.|--
T Consensus 266 e~wTNg~~kSt~HRVv~~~~~~~R~Sia~F~ 296 (341)
T PLN02984 266 QVISDDEYKSVLHRVGKRNKKKERYSICYFV 296 (341)
T ss_pred hhhcCCeeeCCCCccccCCCCCCeEEEEEEe
Confidence 8887 777 23456799999863
No 30
>PLN02947 oxidoreductase
Probab=28.24 E-value=1.7e+02 Score=32.30 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=48.3
Q ss_pred EEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cc-eeeeeeeccCCCCCCCCcceEEEEecCCcEEEecccccc
Q 006789 326 SCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSAD 397 (631)
Q Consensus 326 qcLIN~Y~pG------dgI~PHvDep~FG~PIvsLSL-S~-cvM~Fgr~~~~d~~gd~~~~~~L~L~~GSLLVMsGeAR~ 397 (631)
.+.+|+|.+- -++++|.|- .++||.+ .+ .=+...+ .| +=+.|.-.+|+++|.-|+.=.
T Consensus 226 ~lrln~YPp~p~~~~~~G~~~HTD~-----g~lTlL~Qd~v~GLQV~~------~g---~Wi~V~p~pga~VVNvGD~Lq 291 (374)
T PLN02947 226 MMVVNCYPACPEPELTLGMPPHSDY-----GFLTLLLQDEVEGLQIMH------AG---RWVTVEPIPGSFVVNVGDHLE 291 (374)
T ss_pred eeeeecCCCCCCcccccCCCCccCC-----CceEEEEecCCCCeeEeE------CC---EEEeCCCCCCeEEEEeCceee
Confidence 4568999753 256788883 2555555 22 1122222 11 236677778888888888776
Q ss_pred ccc--------cccc-CCCCCeEEEEeeec
Q 006789 398 IAK--------HAIS-SIRKQRILVTFTKS 418 (631)
Q Consensus 398 ~Wk--------HaIp-~~r~rRISLTFRrv 418 (631)
.|. |.+. +....|+||.|.-.
T Consensus 292 ~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~ 321 (374)
T PLN02947 292 IFSNGRYKSVLHRVRVNSTKPRISVASLHS 321 (374)
T ss_pred eeeCCEEeccccccccCCCCCEEEEEEEec
Confidence 665 4442 23567999999654
No 31
>PLN02904 oxidoreductase
Probab=27.68 E-value=1.8e+02 Score=31.93 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=49.8
Q ss_pred EEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-CceeeeeeeccCCCCCCCCcceEEEEecCCcEEEeccccccc
Q 006789 326 SCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADI 398 (631)
Q Consensus 326 qcLIN~Y~pG------dgI~PHvDep~FG~PIvsLSL-S~cvM~Fgr~~~~d~~gd~~~~~~L~L~~GSLLVMsGeAR~~ 398 (631)
.+-+|+|.+- -++++|.|- | .+||.+ ...=+..... .| +=+.|.-.+|+|+|.-|+.=..
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~---g--~lTlL~qd~~GLQV~~~-----~g---~Wi~V~p~pgalVVNiGD~Le~ 275 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDF---G--SLTILLQSSQGLQIMDC-----NK---NWVCVPYIEGALIVQLGDQVEV 275 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCC---C--ceEEEecCCCeeeEEeC-----CC---CEEECCCCCCeEEEEccHHHHH
Confidence 4568999752 256788883 2 455545 2222332221 11 2478888999999999987767
Q ss_pred cc--------ccccC-CCCCeEEEEeeec
Q 006789 399 AK--------HAISS-IRKQRILVTFTKS 418 (631)
Q Consensus 399 Wk--------HaIp~-~r~rRISLTFRrv 418 (631)
|. |.|.. ....|+||.|.-.
T Consensus 276 ~TNG~~kSt~HRVv~~~~~~R~Si~~F~~ 304 (357)
T PLN02904 276 MSNGIYKSVVHRVTVNKDYKRLSFASLHS 304 (357)
T ss_pred HhCCeeeccCCcccCCCCCCEEEEEEeec
Confidence 64 44432 3467999999743
No 32
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=26.31 E-value=2.9e+02 Score=31.07 Aligned_cols=109 Identities=11% Similarity=0.258 Sum_probs=66.5
Q ss_pred CCCCCcHHHHHHHHHHHhCccCC-CCCCEEEEeccCCCCCCCCCCCCCCCCCCEEEEEc-CceeeeeeeccCCCC----C
Q 006789 299 RIEPIPSLLQDVIDRLVGLQIMT-VKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFL-TECDMTFGRMIGIDH----P 372 (631)
Q Consensus 299 ~~ePIP~~Lq~LidRLv~~~ll~-~~PNqcLIN~Y~pGdgI~PHvDep~FG~PIvsLSL-S~cvM~Fgr~~~~d~----~ 372 (631)
.++-|-+.+..|++++ ..++ .+-|-++|-+=.+|.+.++|.|. |+ |.+|=. +.+....+....... .
T Consensus 95 ~vd~w~p~v~~l~~~F---rflP~wr~ddiMIS~a~~GGgvg~H~D~--YD--VfliQg~G~RRW~v~~~~~~~~~~~~~ 167 (383)
T COG2850 95 AVDHWHPEVAALMEPF---RFLPDWRIDDIMISFAAPGGGVGPHFDQ--YD--VFLIQGQGRRRWRVGKKCNMSTLCPHP 167 (383)
T ss_pred hhhhcCHHHHHHHHHh---ccCccccccceEEEEecCCCccCccccc--hh--eeEEeecccceeecCCcccccCcCCCc
Confidence 3455556666676665 3344 68899999855788999999985 33 444444 556555554321100 0
Q ss_pred -----CCCcceEEEEecCCcEEEecccccccccccccCCCCCeEEEEeee
Q 006789 373 -----GDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTK 417 (631)
Q Consensus 373 -----gd~~~~~~L~L~~GSLLVMsGeAR~~WkHaIp~~r~rRISLTFRr 417 (631)
..+.......|++|++|-+=- ..|-|+|+--.---.|+-||-
T Consensus 168 d~~~~~~f~~~~d~vlepGDiLYiPp---~~~H~gvae~dc~tySvG~r~ 214 (383)
T COG2850 168 DLLILAPFEPDIDEVLEPGDILYIPP---GFPHYGVAEDDCMTYSVGFRA 214 (383)
T ss_pred chhhcCCCCchhhhhcCCCceeecCC---CCCcCCcccccccceeeeccC
Confidence 112235678899999776632 246677776444556777765
No 33
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=24.89 E-value=1.8e+02 Score=31.76 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=48.7
Q ss_pred CEEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cc-eeeeeeeccCCCCCCCCcceEEEEecCCcEEEeccccc
Q 006789 325 DSCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSA 396 (631)
Q Consensus 325 NqcLIN~Y~pG------dgI~PHvDep~FG~PIvsLSL-S~-cvM~Fgr~~~~d~~gd~~~~~~L~L~~GSLLVMsGeAR 396 (631)
..+-+|+|.+- -++++|.|- | .+||.+ .+ -=+...+. | +=+.|.-.+|+|+|--|++=
T Consensus 197 ~~lrl~~YPp~~~~~~~~G~~~HtD~---g--~lTlL~Qd~v~GLQV~~~------g---~Wi~V~p~pgalvVNiGD~L 262 (348)
T PLN02912 197 QHMAINYYPPCPQPELTYGLPGHKDA---N--LITVLLQDEVSGLQVFKD------G---KWIAVNPIPNTFIVNLGDQM 262 (348)
T ss_pred ceeeeeecCCCCChhhcCCcCCCcCC---C--ceEEEEECCCCceEEEEC------C---cEEECCCcCCeEEEEcCHHH
Confidence 45678999752 256788873 2 455544 21 11332221 1 24677778899999888876
Q ss_pred cccc--------cccc-CCCCCeEEEEeeec
Q 006789 397 DIAK--------HAIS-SIRKQRILVTFTKS 418 (631)
Q Consensus 397 ~~Wk--------HaIp-~~r~rRISLTFRrv 418 (631)
..|. |.|- +....|+||.|-.-
T Consensus 263 ~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~ 293 (348)
T PLN02912 263 QVISNDKYKSVLHRAVVNTDKERISIPTFYC 293 (348)
T ss_pred HHHhCCEEEcccccccCCCCCCEEEEEEEec
Confidence 6665 4442 23567999998654
No 34
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=24.01 E-value=1.9e+02 Score=30.34 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=48.2
Q ss_pred EEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cc-eeeeeeeccCCCCCCCCcceEEEEecCCcEEEeccccccc
Q 006789 327 CIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADI 398 (631)
Q Consensus 327 cLIN~Y~pG------dgI~PHvDep~FG~PIvsLSL-S~-cvM~Fgr~~~~d~~gd~~~~~~L~L~~GSLLVMsGeAR~~ 398 (631)
+-+|+|.+- -++++|.|- | .+||.+ .+ .=+...+ .| +=+.|.-.+|+++|.-|+.=..
T Consensus 118 lrl~~YP~~~~~~~~~g~~~HtD~---g--~lTlL~qd~v~GLqV~~------~g---~Wi~V~p~p~a~vVNiGD~l~~ 183 (262)
T PLN03001 118 ITVSYYPPCPQPELTLGLQSHSDF---G--AITLLIQDDVEGLQLLK------DA---EWLMVPPISDAILIIIADQTEI 183 (262)
T ss_pred heeecCCCCCCcccccCCcCCcCC---C--eeEEEEeCCCCceEEee------CC---eEEECCCCCCcEEEEccHHHHH
Confidence 457888641 256788883 3 555544 22 1233321 11 2366777889999999998888
Q ss_pred cc--------ccccC-CCCCeEEEEeeec
Q 006789 399 AK--------HAISS-IRKQRILVTFTKS 418 (631)
Q Consensus 399 Wk--------HaIp~-~r~rRISLTFRrv 418 (631)
|. |.|-. ....|+||.|-..
T Consensus 184 ~tng~~~S~~HRVv~~~~~~R~Sia~F~~ 212 (262)
T PLN03001 184 ITNGNYKSAQHRAIANANKARLSVATFHD 212 (262)
T ss_pred HhCCccccccceEEcCCCCCEEEEEEEEc
Confidence 87 44432 3467999998643
No 35
>PLN02997 flavonol synthase
Probab=23.80 E-value=2.1e+02 Score=30.90 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=49.3
Q ss_pred EEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cc-eeeeeeeccCCCCCCCCcceEEEEecCCcEEEecccccc
Q 006789 326 SCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSAD 397 (631)
Q Consensus 326 qcLIN~Y~pG------dgI~PHvDep~FG~PIvsLSL-S~-cvM~Fgr~~~~d~~gd~~~~~~L~L~~GSLLVMsGeAR~ 397 (631)
.+-+|+|.+- -++++|.|- | ++||.+ .+ -=+...+ .| +=+.|.-.+|+|+|.-|+.=.
T Consensus 184 ~lRl~~YP~~~~~~~~~g~~~HTD~---g--~lTlL~Qd~v~GLQV~~------~g---~Wi~V~p~pgalvVNiGD~Le 249 (325)
T PLN02997 184 VLRVNFYPPTQDTELVIGAAAHSDM---G--AIALLIPNEVPGLQAFK------DE---QWLDLNYINSAVVVIIGDQLM 249 (325)
T ss_pred eeeeecCCCCCCcccccCccCccCC---C--ceEEEecCCCCCEEEeE------CC---cEEECCCCCCeEEEEechHHH
Confidence 4568999652 256788883 2 555545 22 1132222 11 246777889999999998877
Q ss_pred ccc--------ccccCC-CCCeEEEEeeec
Q 006789 398 IAK--------HAISSI-RKQRILVTFTKS 418 (631)
Q Consensus 398 ~Wk--------HaIp~~-r~rRISLTFRrv 418 (631)
.|. |.|... ...|+||.|-.-
T Consensus 250 ~~TNG~~kSt~HRVv~~~~~~R~Si~fF~~ 279 (325)
T PLN02997 250 RMTNGRFKNVLHRAKTDKERLRISWPVFVA 279 (325)
T ss_pred HHhCCccccccceeeCCCCCCEEEEEEEec
Confidence 776 555432 346999988654
No 36
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=23.25 E-value=95 Score=28.99 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.0
Q ss_pred CceEEecCCCCHHHHHHHHHHHHhh
Q 006789 222 DGLKLYEEVSGNSEVSKLVSLVNDL 246 (631)
Q Consensus 222 pGL~y~pdFLS~eEe~kLLs~I~el 246 (631)
.|..+++++|+.+|.++|.+.++++
T Consensus 4 ~Gyvvi~~~l~~~~~~~l~~~~~~~ 28 (211)
T PF05721_consen 4 DGYVVIRNVLSPEEVERLREELDRL 28 (211)
T ss_dssp HSEEEETTSS-HHHHHHHHHHHHHH
T ss_pred CcEEEECCcCCHHHHHHHHHHHHHH
Confidence 3889999999999999999999876
No 37
>PRK08304 stage V sporulation protein AD; Validated
Probab=22.86 E-value=38 Score=37.25 Aligned_cols=28 Identities=36% Similarity=0.638 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHhhhhhcC-CCCchhHHHH
Q 006789 25 AAANAIIDTLCHHLRVIG-EPGEYDFAIN 52 (631)
Q Consensus 25 aaanaiid~l~~Hl~~~~-~~~eyd~v~~ 52 (631)
|-|.|-.|.+++||++.| .|..||.++.
T Consensus 205 aMapAa~dti~~h~~d~~~~~~~yDli~t 233 (337)
T PRK08304 205 AMAPAAADTIQQHFKDTGRSPEDYDLIVT 233 (337)
T ss_pred hhhHHHHHHHHHHHHHcCCChhhccEEEE
Confidence 668899999999999998 9999999864
No 38
>PLN02485 oxidoreductase
Probab=22.75 E-value=2e+02 Score=30.88 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=49.7
Q ss_pred EEEEeccCCC----------CCCCCCCCCCCCCCCEEEEEcCc---eeeeeeeccCCCCCCCCcceEEEEecCCcEEEec
Q 006789 326 SCIVDVFNEG----------DHSQPHISPSWFGRPVCILFLTE---CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQ 392 (631)
Q Consensus 326 qcLIN~Y~pG----------dgI~PHvDep~FG~PIvsLSLS~---cvM~Fgr~~~~d~~gd~~~~~~L~L~~GSLLVMs 392 (631)
.+-+|+|.+- -++++|.|- | .+||.+.+ -=+..... .| .=+.|.-.+|.++|.-
T Consensus 185 ~lrl~~YP~~~~~~~~~~~~~g~~~HTD~---g--~lTlL~qd~~~~GLqV~~~-----~g---~Wi~V~p~pg~~vVNi 251 (329)
T PLN02485 185 VMRIIGYPGVSNLNGPPENDIGCGAHTDY---G--LLTLVNQDDDITALQVRNL-----SG---EWIWAIPIPGTFVCNI 251 (329)
T ss_pred eEEEEeCCCCccccCCcccCcccccccCC---C--eEEEEeccCCCCeeeEEcC-----CC---cEEECCCCCCcEEEEh
Confidence 4567778542 246788873 3 55555522 12333221 11 2477888899999999
Q ss_pred cccccccc--------ccccC-CCCCeEEEEeee
Q 006789 393 GKSADIAK--------HAISS-IRKQRILVTFTK 417 (631)
Q Consensus 393 GeAR~~Wk--------HaIp~-~r~rRISLTFRr 417 (631)
|++=..|. |.|.. ....|+||.|--
T Consensus 252 GD~L~~~TnG~~~St~HRVv~~~~~~R~Si~~F~ 285 (329)
T PLN02485 252 GDMLKIWSNGVYQSTLHRVINNSPKYRVCVAFFY 285 (329)
T ss_pred HHHHHHHHCCEeeCCCceecCCCCCCeEEEEEEe
Confidence 98887787 66653 345799999863
No 39
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=22.53 E-value=1.4e+02 Score=31.93 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=44.8
Q ss_pred CEEEEeccC-CCC--CCCCCCCCCCCCCCEEEEEc-CceeeeeeeccCCCCC----------CCCcceEEEEecCCcEEE
Q 006789 325 DSCIVDVFN-EGD--HSQPHISPSWFGRPVCILFL-TECDMTFGRMIGIDHP----------GDYRGTLRLSVAPGSLLV 390 (631)
Q Consensus 325 NqcLIN~Y~-pGd--gI~PHvDep~FG~PIvsLSL-S~cvM~Fgr~~~~d~~----------gd~~~~~~L~L~~GSLLV 390 (631)
-.|-+|.|- ++. +.++|.|.. -+++|=| +...+.+......... ........+.|++|++|.
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~----dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LY 187 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDH----DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLY 187 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SS----EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEE
T ss_pred cccceEEEecCCCCCCccCEECCc----ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEE
Confidence 678999995 444 899999863 3566666 7778887762110000 011235789999999998
Q ss_pred ecccccccccccccCCCCCeEEEEee
Q 006789 391 MQGKSADIAKHAISSIRKQRILVTFT 416 (631)
Q Consensus 391 MsGeAR~~WkHaIp~~r~rRISLTFR 416 (631)
|=-- |-|...... .=++|||.
T Consensus 188 lPrG----~~H~~~~~~-~S~hltv~ 208 (319)
T PF08007_consen 188 LPRG----WWHQAVTTD-PSLHLTVG 208 (319)
T ss_dssp E-TT-----EEEEEESS--EEEEEEE
T ss_pred ECCC----ccCCCCCCC-CceEEEEe
Confidence 8432 334443333 55666665
No 40
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=22.35 E-value=5.1e+02 Score=31.93 Aligned_cols=40 Identities=38% Similarity=0.720 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCCCCCCCcccCCCCCCCccccCCCCCCCC
Q 006789 434 PGIAPSPHWGPPPGRPPNHIRHPTGPKHFAPIPTTGVLPA 473 (631)
Q Consensus 434 p~~~~~~~w~~~~~r~~~~~~h~~~pkh~~~~p~~~v~p~ 473 (631)
|...++..|.++++=.||...-+..|---+|-|-.|++|-
T Consensus 602 Ppa~p~~~~~ppPgf~PnpPpP~~~Pg~np~~pPpg~~pP 641 (894)
T KOG0132|consen 602 PPAFPGPMWHPPPGFVPNPPPPPLRPGYNPYPPPPGFMPP 641 (894)
T ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCC
Confidence 4455677888877777766555555543336666666654
No 41
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=22.17 E-value=39 Score=36.98 Aligned_cols=28 Identities=36% Similarity=0.642 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHhhhhhcC-CCCchhHHHH
Q 006789 25 AAANAIIDTLCHHLRVIG-EPGEYDFAIN 52 (631)
Q Consensus 25 aaanaiid~l~~Hl~~~~-~~~eyd~v~~ 52 (631)
|-|.|-.|.+++||++.| .|..||+++.
T Consensus 200 AMAPAA~dTI~~h~~D~g~~p~dYDlIvT 228 (329)
T PF07451_consen 200 AMAPAAADTIEQHFKDTGRSPDDYDLIVT 228 (329)
T ss_dssp HHHHHHHHHHHHHHHHCT--GGG-SEEEE
T ss_pred hHhHHHHHHHHHHHHHhCCChhhcCeEEe
Confidence 678899999999999998 9999999864
No 42
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=22.04 E-value=2.9e+02 Score=30.40 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=50.7
Q ss_pred CEEEEeccCC--C----CCCCCCCCCCCCCCCEEEEEc-Cc-eeeeeeeccCCCCCCCCcceEEEEecCCcEEEeccccc
Q 006789 325 DSCIVDVFNE--G----DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSA 396 (631)
Q Consensus 325 NqcLIN~Y~p--G----dgI~PHvDep~FG~PIvsLSL-S~-cvM~Fgr~~~~d~~gd~~~~~~L~L~~GSLLVMsGeAR 396 (631)
..+.+|+|.+ . -++++|.|- | .+||.+ .+ .=+...+.. + ..=+.|.-.+|+|+|.-|+.=
T Consensus 195 ~~lrl~~YP~~~~~~~~~G~~~HTD~---g--~lTlL~Qd~v~GLQV~~~~-----~--~~Wi~Vpp~pgalVVNiGD~L 262 (358)
T PLN02515 195 QKVVVNYYPKCPQPDLTLGLKRHTDP---G--TITLLLQDQVGGLQATRDG-----G--KTWITVQPVEGAFVVNLGDHG 262 (358)
T ss_pred ceEEEeecCCCCChhhccCCCCCCCC---C--eEEEEecCCCCceEEEECC-----C--CeEEECCCCCCeEEEEccHHH
Confidence 3567999975 1 257788873 2 555555 22 223332211 0 124778888999999999877
Q ss_pred cccc--------ccc-cCCCCCeEEEEeeec
Q 006789 397 DIAK--------HAI-SSIRKQRILVTFTKS 418 (631)
Q Consensus 397 ~~Wk--------HaI-p~~r~rRISLTFRrv 418 (631)
..|. |.| ......|+||.|.--
T Consensus 263 ~~~TNG~~kSt~HRVv~~~~~~R~Si~~F~~ 293 (358)
T PLN02515 263 HYLSNGRFKNADHQAVVNSNCSRLSIATFQN 293 (358)
T ss_pred HHHhCCeeeeecceEECCCCCCEEEEEEEec
Confidence 6775 443 223567999998654
No 43
>PRK12404 stage V sporulation protein AD; Provisional
Probab=21.44 E-value=42 Score=36.91 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHhhhhhcC-CCCchhHHHH
Q 006789 25 AAANAIIDTLCHHLRVIG-EPGEYDFAIN 52 (631)
Q Consensus 25 aaanaiid~l~~Hl~~~~-~~~eyd~v~~ 52 (631)
|-|.|-.|.+++||++.| .|..||.++.
T Consensus 203 aMAPAA~dti~~h~~d~~~~~~~yDlI~T 231 (334)
T PRK12404 203 AMAPAAVDTIEAHLRDRQIDASYYDLIVT 231 (334)
T ss_pred hhhHHHHHHHHHHHHHhCCChhhccEEEE
Confidence 678899999999999998 9999999864
No 44
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=20.50 E-value=46 Score=36.53 Aligned_cols=28 Identities=32% Similarity=0.507 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHhhhhhcC-CCCchhHHHH
Q 006789 25 AAANAIIDTLCHHLRVIG-EPGEYDFAIN 52 (631)
Q Consensus 25 aaanaiid~l~~Hl~~~~-~~~eyd~v~~ 52 (631)
|-|.|-.|.+++||++.| .|..||.++.
T Consensus 199 amapaa~dti~~h~~d~~~~~~~yd~i~t 227 (327)
T TIGR02845 199 AMAPAAADTIEAHFKDTGRSVDDYDLIVT 227 (327)
T ss_pred hhhHHHHHHHHHHHHHcCCChhhccEEEe
Confidence 668899999999999998 9999999864
No 45
>PLN02704 flavonol synthase
Probab=20.36 E-value=1.9e+02 Score=31.21 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=48.7
Q ss_pred EEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cc-eeeeeeeccCCCCCCCCcceEEEEecCCcEEEeccccccc
Q 006789 327 CIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADI 398 (631)
Q Consensus 327 cLIN~Y~pG------dgI~PHvDep~FG~PIvsLSL-S~-cvM~Fgr~~~~d~~gd~~~~~~L~L~~GSLLVMsGeAR~~ 398 (631)
+-+|+|.+- -++++|.|- | ++||.+ .+ -=+...+ .| +=+.+.-.+|+|+|.-|+.=..
T Consensus 201 lrl~~YP~~~~~~~~~g~~~HtD~---g--~lTlL~qd~v~GLQV~~------~g---~Wi~V~p~pg~lvVNvGD~L~~ 266 (335)
T PLN02704 201 LKINYYPPCPRPDLALGVVAHTDM---S--AITILVPNEVQGLQVFR------DD---HWFDVKYIPNALVIHIGDQIEI 266 (335)
T ss_pred hhhhcCCCCCCcccccCccCccCC---c--ceEEEecCCCCceeEeE------CC---EEEeCCCCCCeEEEEechHHHH
Confidence 457888652 146788873 2 555544 22 1233322 11 2477888899999999988777
Q ss_pred ccccccC---------CCCCeEEEEeeec
Q 006789 399 AKHAISS---------IRKQRILVTFTKS 418 (631)
Q Consensus 399 WkHaIp~---------~r~rRISLTFRrv 418 (631)
|.-+.-+ ....|+||.|--.
T Consensus 267 ~TNg~~kSt~HRVv~~~~~~R~Si~~F~~ 295 (335)
T PLN02704 267 LSNGKYKSVLHRTTVNKEKTRMSWPVFLE 295 (335)
T ss_pred HhCCeeecccceeecCCCCCeEEEEEEec
Confidence 7644333 3467999998654
No 46
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=20.02 E-value=2.3e+02 Score=30.62 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=49.7
Q ss_pred EEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cce--eeeeeeccCCCCCCCCcceEEEEecCCcEEEeccccc
Q 006789 326 SCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TEC--DMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSA 396 (631)
Q Consensus 326 qcLIN~Y~pG------dgI~PHvDep~FG~PIvsLSL-S~c--vM~Fgr~~~~d~~gd~~~~~~L~L~~GSLLVMsGeAR 396 (631)
.+-+|+|.+- -++.+|.|- | .+||.+ .+. =+...+ .| +=+.|.-.+|+|+|.-|++=
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~---g--~lTlL~qd~~v~GLQV~~------~g---~Wi~V~p~pg~lvVNiGD~l 224 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDA---G--GIILLFQDDKVSGLQLLK------DG---EWVDVPPMRHSIVVNLGDQL 224 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCC---C--eEEEEEecCCCCCcCccc------CC---eEEECCCCCCeEEEEeCHHH
Confidence 4568889742 256688873 2 555555 221 122211 11 24677888999999999988
Q ss_pred ccccccccC---------CCCCeEEEEeeec
Q 006789 397 DIAKHAISS---------IRKQRILVTFTKS 418 (631)
Q Consensus 397 ~~WkHaIp~---------~r~rRISLTFRrv 418 (631)
..|..+.-+ ....|+||.|-.-
T Consensus 225 ~~~Tng~~kS~~HRVv~~~~~~R~Si~~F~~ 255 (321)
T PLN02299 225 EVITNGKYKSVMHRVVAQTDGNRMSIASFYN 255 (321)
T ss_pred HHHhCCceecccceeecCCCCCEEEEEEEec
Confidence 888755444 3457999998654
Done!