BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006790
(631 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255559474|ref|XP_002520757.1| DNA repair helicase rad3/xp-d, putative [Ricinus communis]
gi|223540142|gb|EEF41719.1| DNA repair helicase rad3/xp-d, putative [Ricinus communis]
Length = 758
Score = 1236 bits (3199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/631 (92%), Positives = 612/631 (96%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F++EDVTVYFPYDNIYPEQYSYM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MKFQIEDVTVYFPYDNIYPEQYSYMIELKRALDAKGHCLLEMPTGTGKTIALLSLITSYS 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
LSKP++PVKLIYCTRTVHEMEKTLAELKLLHNYQ +HLGPAA+ILAIGLSSRKNLCVN R
Sbjct: 61 LSKPQSPVKLIYCTRTVHEMEKTLAELKLLHNYQIKHLGPAARILAIGLSSRKNLCVNPR 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
VLAAENRDSVDA CRK TASW+RA+AAENPNI TCEFFENYE+AASAAVLPPGVYTLQDL
Sbjct: 121 VLAAENRDSVDAGCRKLTASWMRAMAAENPNIPTCEFFENYERAASAAVLPPGVYTLQDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
R +GK++GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
Sbjct: 181 RTYGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALSVSVR+QTLEGA+RNLSRINQEIERFKATDAGRLRAEYNRLVEGLA RGNL +
Sbjct: 241 NVCIEALSVSVRKQTLEGASRNLSRINQEIERFKATDAGRLRAEYNRLVEGLAQRGNLAV 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D WLSNPALP DILKEAVPGNIRRAEHFLHVLRRLVQYL+GRL+TENVEKE PVSFVAS
Sbjct: 301 TDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLKGRLDTENVEKESPVSFVAS 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + AGIDQKTL+FCY+RLHSLMLTLEITDTDEFLH+QTICDFATLVGTY+RGFSIIIEP
Sbjct: 361 LNSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYSRGFSIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FDERMPHIPDPVLQLSCHDASLA+KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
Sbjct: 421 FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS+VPDGIVCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSVVPDGIVCFFV 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMD II +WN++GILKEIMQHKLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIINSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKVAEGIDFDRHYGRLVIMFG+PFQYTLSK
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGIPFQYTLSK 631
>gi|224062561|ref|XP_002300852.1| predicted protein [Populus trichocarpa]
gi|222842578|gb|EEE80125.1| predicted protein [Populus trichocarpa]
Length = 758
Score = 1212 bits (3137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/631 (90%), Positives = 602/631 (95%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F++EDVTVYFPYD+IYPEQYSYM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MKFQIEDVTVYFPYDHIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+SKP+ +KLIYCTRTVHEMEKTLAELKLLHNYQ +HLGPAAKILAIGLSSRKNLCVN
Sbjct: 61 ISKPQGAIKLIYCTRTVHEMEKTLAELKLLHNYQVKHLGPAAKILAIGLSSRKNLCVNPN 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
VL A NRDSVDAACRKRTASWVRALAAENPN+ETCEFFENYE+AAS AVLPPGVYTLQDL
Sbjct: 121 VLEANNRDSVDAACRKRTASWVRALAAENPNVETCEFFENYERAASGAVLPPGVYTLQDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
RA+GK++GWCPYFLARHMVQ ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
Sbjct: 181 RAYGKEKGWCPYFLARHMVQLANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALSVSVRRQTL+GA+RN+SRI QEI RFKATDA RLR EY RLV GLAL GNLP
Sbjct: 241 NVCIEALSVSVRRQTLDGASRNISRIEQEINRFKATDANRLRDEYKRLVNGLALSGNLPG 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+D+WLSNPALP DIL+EAVPGNIRRAEHFLHVLRRL+QYL RL+TENVEKE P+SFVAS
Sbjct: 301 SDSWLSNPALPDDILREAVPGNIRRAEHFLHVLRRLLQYLTVRLDTENVEKESPISFVAS 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I AGIDQKTL+FCY+RLHSLMLTLEITDTDEFLH+QTICDFATLVGTY+RGFSIIIEP
Sbjct: 361 INNQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYSRGFSIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FDERMPHIPDPVLQLSCHDASLA+KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
Sbjct: 421 FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGV RNYGKLLVEMVSIVPDGIVCFFV
Sbjct: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGIVCFFV 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMD II TWN+SG+LKEIMQHKLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIINTWNESGLLKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
>gi|225437002|ref|XP_002277634.1| PREDICTED: DNA repair helicase UVH6 [Vitis vinifera]
Length = 758
Score = 1209 bits (3127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/631 (90%), Positives = 603/631 (95%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F++EDVTVYFPYDNIYPEQYSYM+ELKRALDAKGH LLEMPTGTGKTIALLSLITSY
Sbjct: 1 MKFQIEDVTVYFPYDNIYPEQYSYMVELKRALDAKGHALLEMPTGTGKTIALLSLITSYA 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
LSKP NP+KL+YCTRTVHEMEKTLAEL+LLH YQ RHLGPAA+ILA+GLSSRKNLC+N
Sbjct: 61 LSKPSNPIKLLYCTRTVHEMEKTLAELRLLHQYQLRHLGPAARILALGLSSRKNLCINPA 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V++AENRDSVDA CRK TASWVRALA ENPNI TC+FFENYEKAAS AVLPPGVYTLQDL
Sbjct: 121 VVSAENRDSVDAGCRKLTASWVRALAVENPNIPTCQFFENYEKAASEAVLPPGVYTLQDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
RAFG+ +GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ+ESVVVFDEAHNID
Sbjct: 181 RAFGRDKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALSVSVRRQTLEGATRNLS++ QEI RFKATDAGRLRAEYNRLVEGLA RGNLPI
Sbjct: 241 NVCIEALSVSVRRQTLEGATRNLSKMAQEINRFKATDAGRLRAEYNRLVEGLAQRGNLPI 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+D WL+NPALP DILKEAVPGNIRRAEHFL VLRRLVQYL GRLETENVEKEGPV+FVAS
Sbjct: 301 SDTWLANPALPDDILKEAVPGNIRRAEHFLSVLRRLVQYLHGRLETENVEKEGPVAFVAS 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I + AGIDQK L+FCY+RLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP
Sbjct: 361 INSQAGIDQKMLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FDERMPHIPDPVLQLSCHDASLA+KPVF+RFQSVVITSGTLSPIDLYPRLLNF+PVVSRS
Sbjct: 421 FDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F MSLTR+CICPMVLTRGSDQLPVSTKFDMRSDPGV RNYG+LL+EMVS+VPDGIVCFFV
Sbjct: 481 FTMSLTRNCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMVSVVPDGIVCFFV 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMD I+ TWN+SGILKEIMQHKLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNTWNESGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLS+
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSR 631
>gi|356559661|ref|XP_003548117.1| PREDICTED: DNA repair helicase UVH6-like [Glycine max]
Length = 758
Score = 1196 bits (3093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/631 (88%), Positives = 601/631 (95%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F++ED+TVYFPYDNIYPEQYSYM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV
Sbjct: 1 MKFEIEDITVYFPYDNIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
LSKP +P+KL+YCTRTVHEMEKTLAEL+LLH+YQ RHLGPAAKILA+GLSSRKNLCVN R
Sbjct: 61 LSKPHSPLKLLYCTRTVHEMEKTLAELRLLHDYQLRHLGPAAKILALGLSSRKNLCVNPR 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
VLAAENRDSVDA CRK TASWVRA+AAENP + TCEFFE YE+A S+AVLPPGVYTLQDL
Sbjct: 121 VLAAENRDSVDAGCRKLTASWVRAVAAENPGVPTCEFFEQYERAGSSAVLPPGVYTLQDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
R +GK++GWCPY+LARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
Sbjct: 181 RVYGKEKGWCPYYLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALSVSVRRQT+EGA RNL+R+ QEI++FKATDAGRLRAEYNRLVEGLALRG+LP
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNRMRQEIDKFKATDAGRLRAEYNRLVEGLALRGDLPA 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DAWL+NPALP DILKEAVPGNIRRAEHF+HVLRRLVQYL GRL+TENVEKE PVSFV S
Sbjct: 301 TDAWLANPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKESPVSFVVS 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I HAGIDQK L+FCY+RLHSLM+TLEITDTDEFLHIQTICDFATLVGTY RGFSIIIEP
Sbjct: 361 ILNHAGIDQKALKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FDERMPHIPDPVLQL CHDASLA+KPVF+RFQSVVITSGTLSPIDLYPRLLNF+PVVSRS
Sbjct: 421 FDERMPHIPDPVLQLCCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F MSLTRDCICPMVLTRGSDQLPVSTKFDMRSD GV RNYG+LL+EM S+VPDGIVCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMASVVPDGIVCFFV 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMD I+ TWN++GILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGA+FFSVA
Sbjct: 541 SYSYMDGIVNTWNENGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAIFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
>gi|356499550|ref|XP_003518602.1| PREDICTED: DNA repair helicase UVH6-like [Glycine max]
Length = 758
Score = 1194 bits (3089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/631 (88%), Positives = 602/631 (95%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ED+TVYFPYD IYPEQYSYM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV
Sbjct: 1 MKLEIEDITVYFPYDKIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
LSKP +P+KL+YCTRTVHEMEKTLAEL+LLH+YQ RHLGPAAKILA+GLSSRKNLCVN R
Sbjct: 61 LSKPHSPLKLLYCTRTVHEMEKTLAELRLLHHYQLRHLGPAAKILALGLSSRKNLCVNPR 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
VLAAENRDSVDA CRK TASWVRA+AAENP++ +CEFFE YE+A S+AVLPPGVYTLQDL
Sbjct: 121 VLAAENRDSVDAGCRKLTASWVRAVAAENPSVPSCEFFEQYERAGSSAVLPPGVYTLQDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
RA+GK++GWCPY+LARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
Sbjct: 181 RAYGKEKGWCPYYLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALSVSVRRQT+EGA RNLSR+ QEI++FKATDAGRLRAEYNRLVEGLALRG+LP
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLSRMRQEIDKFKATDAGRLRAEYNRLVEGLALRGDLPA 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DAWL+NPALP DILKEAVPGNIRRAEHF+HVLRRLVQYL GRL+TENVEKE PVSFV S
Sbjct: 301 TDAWLANPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKESPVSFVVS 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I HAGIDQK+L+FCY+RLHSLM+TLEITDTDEFLHIQTICDFATLVGTY RGFSIIIEP
Sbjct: 361 ILNHAGIDQKSLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FDERMPHIPDPVLQL CHDASLA+KPVF+RFQSVVITSGTLSPIDLYPRLLNF+PVVSRS
Sbjct: 421 FDERMPHIPDPVLQLCCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F MSLTRDCICPMVLTRGSDQLPVSTKFDMRSD GV RNYG+LL+EM S+VPDGIVCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMASVVPDGIVCFFV 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMD I+ TWN++GILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGA+FFSVA
Sbjct: 541 SYSYMDGIVNTWNENGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAIFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
>gi|15218736|ref|NP_171818.1| DNA repair helicase UVH6 [Arabidopsis thaliana]
gi|30678494|ref|NP_849584.1| DNA repair helicase UVH6 [Arabidopsis thaliana]
gi|57013122|sp|Q8W4M7.1|ERCC2_ARATH RecName: Full=DNA repair helicase UVH6; AltName: Full=ERCC2
homolog; AltName: Full=RAD3 homolog; Short=AtUVH6;
Short=AtXPD; AltName: Full=UV hypersensitive protein 6;
AltName: Full=XPD homolog
gi|17064790|gb|AAL32549.1| Strong similarity to nucleotide excision repair protein
[Arabidopsis thaliana]
gi|20258776|gb|AAM13910.1| putative DNA repair protein [Arabidopsis thaliana]
gi|22651570|gb|AAM10793.1| DNA repair/transcription factor protein [Arabidopsis thaliana]
gi|34098809|gb|AAQ56787.1| At1g03190 [Arabidopsis thaliana]
gi|332189421|gb|AEE27542.1| DNA repair helicase UVH6 [Arabidopsis thaliana]
gi|332189422|gb|AEE27543.1| DNA repair helicase UVH6 [Arabidopsis thaliana]
Length = 758
Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/631 (87%), Positives = 599/631 (94%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MIFK+EDVTVYFPYDNIYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
LS+P++P+KL+YCTRTVHEMEKTL ELKLLH+YQ RHLG AKILA+GLSSRKNLCVN++
Sbjct: 61 LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
VLAAENRDSVDAACRKRTASWVRAL+ ENPN+E C+FFENYEKAA A+LPPGVYTL+DL
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
RAFGK +GWCPYFLARHM+QFANV+VYSYQYLLDPKVAG ISKE+QKESVVVFDEAHNID
Sbjct: 181 RAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALSVSVRR TLEGA RNL++I QEI+RFKATDAGRLRAEYNRLVEGLALRG+L
Sbjct: 241 NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSG 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL RL+TENVEKE PVSFV+S
Sbjct: 301 GDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSS 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + AGI+QKTL+FCY+RL SLMLTLEITDTDEFL IQT+CDFATLVGTY RGFSIIIEP
Sbjct: 361 LNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
+DERMPHIPDP+LQLSCHDASLA+KPVFDRFQSVVITSGTLSPIDLYPRLLNF PVVSRS
Sbjct: 421 YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
FKMS+TRDCICPMVLTRGSDQLPVSTKFDMRSDPGV RNYGKLLVEMVSIVPDG+VCFFV
Sbjct: 481 FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFV 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMD IIATWN++GILKEIMQ KLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKVAEGIDFDRHYGRLV+M+GVPFQYTLSK
Sbjct: 601 RGKVAEGIDFDRHYGRLVVMYGVPFQYTLSK 631
>gi|297843126|ref|XP_002889444.1| hypothetical protein ARALYDRAFT_470299 [Arabidopsis lyrata subsp.
lyrata]
gi|297335286|gb|EFH65703.1| hypothetical protein ARALYDRAFT_470299 [Arabidopsis lyrata subsp.
lyrata]
Length = 758
Score = 1183 bits (3061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/631 (87%), Positives = 600/631 (95%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MIFK+EDVTVYFPYDNIYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
LS+P++P+KL+YCTRTVHEMEKTL ELKLLH+YQ RHLG A ILAIGLSSRKNLCVN++
Sbjct: 61 LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGAQAMILAIGLSSRKNLCVNTK 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
VLAAENRDSVDAACRKRTASWVRAL+ ENPN+E C++FENYEKAA A+LPPGVYTL+DL
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENPNVELCDYFENYEKAADNALLPPGVYTLEDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
RAFGK +GWCPYFLARHMVQFANV+VYSYQYLLDPKVAGIISKE+QKESVVVFDEAHNID
Sbjct: 181 RAFGKNRGWCPYFLARHMVQFANVIVYSYQYLLDPKVAGIISKELQKESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALSVSVRR TLEGA RNL++I QEI+RFKATDAGRLRAEYNRLVEGLALRG+L
Sbjct: 241 NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSG 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL RL+TENVEKE PVSFV+S
Sbjct: 301 SDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSS 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + AGI+QKTL+FCY+RL SLMLTLEITDTDEFL IQT+CDFATLVGTY RGFSIIIEP
Sbjct: 361 LNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
+DERMPHIPDP+LQLSCHDASLA+KPVFDRFQSVVITSGTLSPIDLYPRLL+F PVVSRS
Sbjct: 421 YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLSFTPVVSRS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
FKMS+TRDCICPMVLTRGSDQLPVSTKFDMRSDPGV RNYGKLLVEMVSIVPDG+VCFFV
Sbjct: 481 FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFV 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMD IIATWN++GILKEIMQ KLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKVAEGIDFDRHYGRLV+M+GVPFQYTLSK
Sbjct: 601 RGKVAEGIDFDRHYGRLVVMYGVPFQYTLSK 631
>gi|6503086|gb|AAF14582.1|AF188623_1 nucleotide excision repair protein XP-D homolog [Arabidopsis
thaliana]
Length = 758
Score = 1182 bits (3057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/631 (87%), Positives = 599/631 (94%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MIFK+EDVTVYFPYDNIYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
LS+P++P+KL+YCTRTVHEMEKTL ELKLLH+YQ RHLG AKILA+GLSSRKNLCVN++
Sbjct: 61 LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
VLAAENRDSVDAACRKRTASWVRAL+ ENPN+E C+FFENYEKAA A+LPPGVYTL+DL
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
RAFGK +GWCPYFLARHM+QFANV+VYSYQYLLDPKVAG ISKE+QKESVVVFDEAHNID
Sbjct: 181 RAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALSVSVRR TLEGA RNL++I QEI+RFKATDAGRLRAEYNRLVEGLALRG+L
Sbjct: 241 NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSG 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL RL+TENVEKE PVSFV+S
Sbjct: 301 GDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSS 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + AGI+QKTL+FCY+RL SLMLTLEITDTDEFL IQT+CDFATLVGTY RGFSIIIEP
Sbjct: 361 LNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
+DERMPHIPDP+LQLSCHDASLA+KPVFDRFQSVVITSGTLSPIDLYPRLLNF PVVSRS
Sbjct: 421 YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
FKMS+TRDCICPMVLTRGSDQLPVSTKFDMRSDPGV RNYGKLLVEMVSIVPDG+VCFFV
Sbjct: 481 FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFV 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMD IIATWN++GIL+EIMQ KLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIIATWNETGILEEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKVAEGIDFDRHYGRLV+M+GVPFQYTLSK
Sbjct: 601 RGKVAEGIDFDRHYGRLVVMYGVPFQYTLSK 631
>gi|3850576|gb|AAC72116.1| Strong similarity to gb|U04968 nucleotide excision repair protein
(ERCC2) from Cricetulus grisseus [Arabidopsis thaliana]
Length = 735
Score = 1174 bits (3038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/644 (86%), Positives = 599/644 (93%), Gaps = 13/644 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MIFK+EDVTVYFPYDNIYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
LS+P++P+KL+YCTRTVHEMEKTL ELKLLH+YQ RHLG AKILA+GLSSRKNLCVN++
Sbjct: 61 LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
VLAAENRDSVDAACRKRTASWVRAL+ ENPN+E C+FFENYEKAA A+LPPGVYTL+DL
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
RAFGK +GWCPYFLARHM+QFANV+VYSYQYLLDPKVAG ISKE+QKESVVVFDEAHNID
Sbjct: 181 RAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIE-------------RFKATDAGRLRAEYNR 287
NVCIEALSVSVRR TLEGA RNL++I QEI+ RFKATDAGRLRAEYNR
Sbjct: 241 NVCIEALSVSVRRVTLEGANRNLNKIRQEIDSSYYIIEIVQLVGRFKATDAGRLRAEYNR 300
Query: 288 LVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETE 347
LVEGLALRG+L D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL RL+TE
Sbjct: 301 LVEGLALRGDLSGGDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTE 360
Query: 348 NVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLV 407
NVEKE PVSFV+S+ + AGI+QKTL+FCY+RL SLMLTLEITDTDEFL IQT+CDFATLV
Sbjct: 361 NVEKESPVSFVSSLNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLV 420
Query: 408 GTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY 467
GTY RGFSIIIEP+DERMPHIPDP+LQLSCHDASLA+KPVFDRFQSVVITSGTLSPIDLY
Sbjct: 421 GTYARGFSIIIEPYDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLY 480
Query: 468 PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEM 527
PRLLNF PVVSRSFKMS+TRDCICPMVLTRGSDQLPVSTKFDMRSDPGV RNYGKLLVEM
Sbjct: 481 PRLLNFTPVVSRSFKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEM 540
Query: 528 VSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKA 587
VSIVPDG+VCFFVSYSYMD IIATWN++GILKEIMQ KLVFIETQDVVETTLALDNYR+A
Sbjct: 541 VSIVPDGVVCFFVSYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRA 600
Query: 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
CDCGRGAVFFSVARGKVAEGIDFDRHYGRLV+M+GVPFQYTLSK
Sbjct: 601 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVVMYGVPFQYTLSK 644
>gi|449462346|ref|XP_004148902.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair helicase UVH6-like
[Cucumis sativus]
Length = 919
Score = 1156 bits (2991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/630 (86%), Positives = 591/630 (93%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL 61
+FK+ ++T F +D I+P++Y Y++++ +ALDAKGHCLLEMPTGTGKTIALLSLITSY L
Sbjct: 163 MFKIXNITKLFXFDIIFPQRYHYLIQINKALDAKGHCLLEMPTGTGKTIALLSLITSYAL 222
Query: 62 SKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV 121
SKP+NPVKLIYCTRTVHEMEKTLAEL+LLH+YQ + LGP A+ILA+GLSSRKNLCVN V
Sbjct: 223 SKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPNV 282
Query: 122 LAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLR 181
LA+E+RDSVDA CRK TASWVRA+AAENP++ TCEFFE YEKA S+AVLPPGVYTLQDLR
Sbjct: 283 LASESRDSVDAGCRKLTASWVRAMAAENPDVPTCEFFEQYEKAGSSAVLPPGVYTLQDLR 342
Query: 182 AFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
AFG ++GWCPYFLARHMVQFANVVVYSYQYLLDPKVA IISKEMQ+ESVVVFDEAHNIDN
Sbjct: 343 AFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNIDN 402
Query: 242 VCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIA 301
VCIEALSVSVRRQT+EGA RNL+++ QEIERFK TDAGRLRAEYNRLVEGLA RGNLPI+
Sbjct: 403 VCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPIS 462
Query: 302 DAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASI 361
D WLSNPALP DILKEAVPGNIRRAEHF+HVLRRLVQYL GRL+TENVEKEG V+FV SI
Sbjct: 463 DTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVGSI 522
Query: 362 TAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPF 421
+ AGIDQKTL+FCY+RLHSLMLTLEITDTDEFLH+QTICDFATLVGTY RGFSIIIEP
Sbjct: 523 GSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEPV 582
Query: 422 DERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSF 481
DERMPHIPDPVLQLSCHDASLA+KPVF+RFQSVVITSGTLSPIDLYPRLLNF+PVVSRSF
Sbjct: 583 DERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRSF 642
Query: 482 KMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVS 541
MSLTRDCICPMVLTRGSDQLPVSTKFDMRSD GV RNYG+LL+EMVS VPDGIVCFFVS
Sbjct: 643 TMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFVS 702
Query: 542 YSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVAR 601
YSYMD II +WN++GILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVAR
Sbjct: 703 YSYMDGIINSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVAR 762
Query: 602 GKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GKVAEGIDFDRHYGRLVIMFGVPFQYTLSK
Sbjct: 763 GKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 792
>gi|449491590|ref|XP_004158946.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair helicase UVH6-like
[Cucumis sativus]
Length = 598
Score = 1111 bits (2874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/597 (87%), Positives = 563/597 (94%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F+LEDVTVYFPYD+IYPEQY+YMLELKRALDAKGHCLLEMPTGTG TIALLSLITSY
Sbjct: 1 MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGXTIALLSLITSYA 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
LSKP+NPVKLIYCTRTVHEMEKTLAEL+LLH+YQ + LGP A+ILA+GLSSRKNLCVN
Sbjct: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPN 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
VLA+E+RDSVDA CRK TASWVRA+AAENP++ TCEFFE YEKA S+AVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPDVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
RAFG ++GWCPYFLARHMVQFANVVVYSYQYLLDPKVA IISKEMQ+ESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALSVSVRRQT+EGA RNL+++ QEIERFK TDAGRLRAEYNRLVEGLA RGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+D WLSNPALP DILKEAVPGNIRRAEHF+HVLRRLVQYL GRL+TENVEKEG V+FV S
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVGS 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I + AGIDQKTL+FCY+RLHSLMLTLEITDTDEFLH+QTICDFATLVGTY RGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
DERMPHIPDPVLQLSCHDASLA+KPVF+RFQSVVITSGTLSPIDLYPRLLNF+PVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F MSLTRDCICPMVLTRGSDQLPVSTKFDMRSD GV RNYG+LL+EMVS VPDGIVCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
SYSYMD II +WN++GILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF
Sbjct: 541 SYSYMDGIINSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
>gi|168039045|ref|XP_001772009.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676610|gb|EDQ63090.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 750
Score = 1052 bits (2721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/631 (77%), Positives = 565/631 (89%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M FK+E +TVYFPY+ IYPEQY YM++LKR LDA+GHCLLEMPTGTGKTI LLSLITSY+
Sbjct: 1 MKFKIEGLTVYFPYEFIYPEQYDYMVDLKRTLDARGHCLLEMPTGTGKTITLLSLITSYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L+ P + KLIYCTRTVHEMEK L EL+ L YQ + LG AAK+LA+GLSSRKNLC++ +
Sbjct: 61 LANP-SVGKLIYCTRTVHEMEKVLEELRKLQAYQEKALGKAAKMLALGLSSRKNLCIHPQ 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +R+SVDA CRK TASWVR+LA +NPNIE C ++E YEK + A+LP GVYTL DL
Sbjct: 120 VSGEGSRESVDAGCRKLTASWVRSLALDNPNIELCPYYEGYEKGGADALLPSGVYTLHDL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
R FG+++ WCPYFLARHM+QFANVVVY+YQYLLDPKVAGIISKEM+KE VVVFDEAHNID
Sbjct: 180 RGFGREKRWCPYFLARHMIQFANVVVYNYQYLLDPKVAGIISKEMEKECVVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALSV++R+QTL+GATRNLS++ Q IE+ KATDA RLR EY+RLVEGLA RGNL
Sbjct: 240 NVCIEALSVNIRQQTLDGATRNLSQVTQLIEKSKATDANRLRQEYSRLVEGLAQRGNLAG 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D WL+NPALP DIL+EAVPGNIRRAEHF+ L+RLVQY++ R+ TE VE E PVSFV +
Sbjct: 300 TDTWLANPALPQDILQEAVPGNIRRAEHFVAFLKRLVQYIKNRMITEKVESESPVSFVTA 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ AGIDQK+L+FCY+RLHSL+LTLE+T+TDEF++IQT+CDFATLVGTYTRGF+IIIEP
Sbjct: 360 LQNQAGIDQKSLKFCYDRLHSLLLTLEVTNTDEFMYIQTVCDFATLVGTYTRGFTIIIEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
+DERMP+IPDPVLQLSC D+SLA+KPVF++FQSVVITSGTLSPIDLYPRLLNFHPV+S S
Sbjct: 420 YDERMPNIPDPVLQLSCLDSSLAIKPVFEKFQSVVITSGTLSPIDLYPRLLNFHPVISNS 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+KM+LTRDC+CPMVLTRGSDQLPVSTKFDMRSDPGV RNYG+LL+EMV+ VPDGIVCFFV
Sbjct: 480 YKMTLTRDCLCPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMVTAVPDGIVCFFV 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMD I+ +WN+ GIL+E+MQHKLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 540 SYSYMDGIVNSWNEMGILQEVMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKVAEGIDFDRHYGRLVIM+GVPFQYTLS+
Sbjct: 600 RGKVAEGIDFDRHYGRLVIMYGVPFQYTLSR 630
>gi|115462055|ref|NP_001054627.1| Os05g0144800 [Oryza sativa Japonica Group]
gi|51038192|gb|AAT93995.1| putative nucleotide excision repair protein XP-D [Oryza sativa
Japonica Group]
gi|113578178|dbj|BAF16541.1| Os05g0144800 [Oryza sativa Japonica Group]
gi|222630172|gb|EEE62304.1| hypothetical protein OsJ_17093 [Oryza sativa Japonica Group]
Length = 758
Score = 1051 bits (2718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/638 (78%), Positives = 567/638 (88%), Gaps = 11/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F LE +TV+FPY IYPEQ++YM ELKRALDA+GH LLEMPTGTGKT AL+SLITSY
Sbjct: 1 MKFDLEGLTVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTSALISLITSYS 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK--ILAIGLSSRKNLCVN 118
L+ P P++LIYCTRTVHEMEKTLAEL+LL HL AA +LA+GLSSRKNLCV+
Sbjct: 61 LASPSRPLRLIYCTRTVHEMEKTLAELRLLFA----HLPAAASRSLLALGLSSRKNLCVH 116
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPN-IETCEFFENYEKAASA----AVLPPG 173
+ AA RDSVD ACR+ TASWVR AA +P+ C+FFE++++AA+A + +PPG
Sbjct: 117 PQASAAAARDSVDTACRRLTASWVRDRAASDPDSTPLCDFFESFDRAAAAGDLASYMPPG 176
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
VYTL DLRA G+ +G CPYFLAR MV++ANVVVYSYQYL+DPKVA I+S+EMQKE VVVF
Sbjct: 177 VYTLADLRALGRDRGICPYFLARQMVKYANVVVYSYQYLIDPKVASIVSREMQKECVVVF 236
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIEALSVS+R+QTLEGA RNL RI+QEI+RFKATDA RLRAEYNRLV+GLA
Sbjct: 237 DEAHNIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLA 296
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
RGNLPI+DAWL+NPALP DILKEAVPGNIRRAEHFL VLRRLV++L GRLETENVE E
Sbjct: 297 QRGNLPISDAWLANPALPEDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEM 356
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
PV+FVASI + AGIDQK LRFCY+RLHSLMLTLEITDTDEF+HIQTICDFATL+GTYTRG
Sbjct: 357 PVAFVASIHSQAGIDQKMLRFCYDRLHSLMLTLEITDTDEFMHIQTICDFATLIGTYTRG 416
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
FSIIIEP+DERMP I DPV+QLSCHDASLA++PVF+RFQ+VVITSGTLSPIDLYPRLLNF
Sbjct: 417 FSIIIEPYDERMPDIRDPVIQLSCHDASLAIQPVFERFQTVVITSGTLSPIDLYPRLLNF 476
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
+PV+SRSF MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGV RNYG+LL+EM S VPD
Sbjct: 477 NPVISRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPD 536
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GIVCFFVSYSYMD I+ +WN+ GIL++IMQHKLVFIET DVVETTLALDNYRKACDCGRG
Sbjct: 537 GIVCFFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRG 596
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
A+FFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS+
Sbjct: 597 AIFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSR 634
>gi|242089495|ref|XP_002440580.1| hypothetical protein SORBIDRAFT_09g003450 [Sorghum bicolor]
gi|241945865|gb|EES19010.1| hypothetical protein SORBIDRAFT_09g003450 [Sorghum bicolor]
Length = 758
Score = 1044 bits (2700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/638 (78%), Positives = 565/638 (88%), Gaps = 11/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F L+ + V+FPY IYPEQ++YM ELKRALDA+GH LLEMPTGTGKT AL+SLITSY
Sbjct: 1 MRFDLDGLPVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA--KILAIGLSSRKNLCVN 118
L+ P P++LIYCTRTVHEMEKTLAEL+LL HL P A +LA+GLSSRKNLCV+
Sbjct: 61 LANPSRPLRLIYCTRTVHEMEKTLAELRLLFA----HLPPPAARSLLALGLSSRKNLCVH 116
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASA----AVLPPG 173
+ AA RDSVD ACR+ TASWVR AA +P + CEF+E +++AA+A + +PPG
Sbjct: 117 PQASAAAARDSVDTACRRLTASWVREKAASDPESTPLCEFYETFDRAAAAGDLASFMPPG 176
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
VYTL DLRA G+++ CPYFLAR MV++ANVVVYSYQYLLDPKVA I+S+EMQKE VVVF
Sbjct: 177 VYTLADLRALGRERRVCPYFLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVF 236
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIEALSVS+R+QTLEGA RNL RI+QEI+RFKATDA RLRAEYNRLV+GLA
Sbjct: 237 DEAHNIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLA 296
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
RGNLPI+DAWL+NPALP DILKEAVPGNIRRAEHFL VLRRLV++L GRLETENVE E
Sbjct: 297 QRGNLPISDAWLANPALPDDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEM 356
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
PVSFVASI + AGIDQK LRFCY+RLHSLM+TLEITDTDEF+HIQTICDFATL+GTYTRG
Sbjct: 357 PVSFVASIHSQAGIDQKMLRFCYDRLHSLMMTLEITDTDEFMHIQTICDFATLIGTYTRG 416
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
FSIIIEP+DERMP I DPV+QLSCHDASLA++PVFDRF++VVITSGTLSPIDLYPRLLNF
Sbjct: 417 FSIIIEPYDERMPDIRDPVIQLSCHDASLAIRPVFDRFETVVITSGTLSPIDLYPRLLNF 476
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
+PV+SRSF MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGV RNYG+LL+EM S VPD
Sbjct: 477 NPVISRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPD 536
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GIVCFFVSYSYMD I+ +W++ GIL++IMQHKLVFIET DVVETTLALDNYRKACDCGRG
Sbjct: 537 GIVCFFVSYSYMDGIVNSWHEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRG 596
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
A+FFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS+
Sbjct: 597 AIFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSR 634
>gi|357134709|ref|XP_003568958.1| PREDICTED: DNA repair helicase UVH6-like [Brachypodium distachyon]
Length = 758
Score = 1043 bits (2696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/638 (78%), Positives = 567/638 (88%), Gaps = 11/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F LE +TV+FPY IYPEQ++YM +LKRALDA+GH LLEMPTGTGKT AL+SLITSY
Sbjct: 1 MKFDLEGLTVHFPYAAIYPEQHAYMGDLKRALDARGHALLEMPTGTGKTAALISLITSYS 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA--KILAIGLSSRKNLCVN 118
L+ P P++L+YCTRTVHEMEKTLAEL+LL + HL PAA +LA+GLSSRKNLCV+
Sbjct: 61 LTNPSRPLRLLYCTRTVHEMEKTLAELRLLFS----HLPPAAARSLLALGLSSRKNLCVH 116
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPN-IETCEFFENYEKAASA----AVLPPG 173
+ A+ RDSVD ACR+ TASWVR AA +P+ C+FFE++++AA+A + +PPG
Sbjct: 117 PQASASAARDSVDTACRRLTASWVRDKAASDPDSTPLCDFFESFDRAAAAGDLASYMPPG 176
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
VYTL DLR+ G+++ CPY+LAR MV++ANVVVYSYQYLLDPKVA I+S+EMQKE VVVF
Sbjct: 177 VYTLADLRSLGRERRICPYYLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVF 236
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIEALSVS+R+QTLEGA RNL RI+QEI+RFKATDA RLRAEYNRLV+GLA
Sbjct: 237 DEAHNIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLA 296
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
RGNLPI+DAWL+NP+LP DILKEAVPGNIRRAEHFL VL+RLV++L GRLETENVE E
Sbjct: 297 QRGNLPISDAWLANPSLPDDILKEAVPGNIRRAEHFLAVLKRLVRFLDGRLETENVENEM 356
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
PVSFVASI + AGIDQ+ LRFCY+RL SL+LTLEITDTDEF+HIQTICDFATL+GTYTRG
Sbjct: 357 PVSFVASIHSQAGIDQRMLRFCYDRLQSLLLTLEITDTDEFMHIQTICDFATLIGTYTRG 416
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
FSIIIEP+D+RMP I DPV+QLSCHDASLA++PVFDRFQ+VVITSGTLSPIDLYPRLLNF
Sbjct: 417 FSIIIEPYDDRMPEIRDPVIQLSCHDASLAIQPVFDRFQTVVITSGTLSPIDLYPRLLNF 476
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
+PV+SRSF MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGV RNYG+LL+EM S VPD
Sbjct: 477 NPVISRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPD 536
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GIVCFFVSYSYMD I+ WN+ GIL++IMQHKLVFIET DVVETTLALDNYRKACDCGRG
Sbjct: 537 GIVCFFVSYSYMDGIVNNWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRG 596
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK
Sbjct: 597 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 634
>gi|226496439|ref|NP_001152321.1| DNA repair helicase UVH6 [Zea mays]
gi|195655087|gb|ACG47011.1| DNA repair helicase UVH6 [Zea mays]
gi|413917667|gb|AFW57599.1| DNA repair helicase UVH6 [Zea mays]
Length = 758
Score = 1043 bits (2696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/638 (78%), Positives = 566/638 (88%), Gaps = 11/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F L+ + V+FPY IYPEQ++YM ELKRALDA+GH LLEMPTGTGKT AL+SLITSY
Sbjct: 1 MRFDLDGLPVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK--ILAIGLSSRKNLCVN 118
L+ P P++LIYCTRTVHEMEKTLAEL+LL HL PAA +LA+GLSSRKNLC++
Sbjct: 61 LANPARPLRLIYCTRTVHEMEKTLAELRLLFA----HLPPAASRSLLALGLSSRKNLCIH 116
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPN-IETCEFFENYEKAASA----AVLPPG 173
+ AA RDSVD ACR+ TASWVR A+ +P+ CEF+E +++AA+A + +PPG
Sbjct: 117 PQASAAAARDSVDTACRRLTASWVREKASSDPDSTPLCEFYETFDRAAAAGDLASFMPPG 176
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
VYTL DLRA G+++ CPYFLAR MV++ANVVVYSYQYLLDPKVA I+S+EMQKE VVVF
Sbjct: 177 VYTLADLRALGRERRVCPYFLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVF 236
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIEALSVS+R+QTLEGA RNL RI+QEI+RFKATDA RLRAEYNRLV+GLA
Sbjct: 237 DEAHNIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLA 296
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
RGNLPI+DAWL+NP+LP DILKEAVPGNIRRAEHFL VLRRLV++L GRLETENVE E
Sbjct: 297 QRGNLPISDAWLANPSLPDDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEM 356
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
PVSFVASI + AGIDQK LRFCY+RLHSLM+TLEITDTDEF+HIQTICDFATL+GTYTRG
Sbjct: 357 PVSFVASIHSQAGIDQKMLRFCYDRLHSLMMTLEITDTDEFMHIQTICDFATLIGTYTRG 416
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
FSIIIEP+D+RMP I DPV+QLSCHDASLA++PVFDRF++VVITSGTLSPIDLYPRLLNF
Sbjct: 417 FSIIIEPYDDRMPDIRDPVIQLSCHDASLAIRPVFDRFETVVITSGTLSPIDLYPRLLNF 476
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
+PV+SRSF MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGV RNYG+LL+EM S VPD
Sbjct: 477 NPVISRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPD 536
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GIVCFFVSYSYMD I+ +W++ GIL++IMQHKLVFIET DVVETTLALDNYRKACDCGRG
Sbjct: 537 GIVCFFVSYSYMDGIVNSWHEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRG 596
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
A+FFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS+
Sbjct: 597 AIFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSR 634
>gi|326508038|dbj|BAJ86762.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 758
Score = 1040 bits (2689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/638 (78%), Positives = 566/638 (88%), Gaps = 11/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F LE +TV+FPY IYPEQ++YM ELKRALDA+GH LLEMPTGTGKT AL+SLITSY
Sbjct: 1 MKFDLEGLTVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK--ILAIGLSSRKNLCVN 118
L+ P P++LIYCTRTVHEMEKTLAEL+LL + HL P A +LA+GLSSRKNLCV+
Sbjct: 61 LANPSRPLRLIYCTRTVHEMEKTLAELRLLFS----HLPPEASRSLLALGLSSRKNLCVH 116
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASA----AVLPPG 173
+ A+ RDSVD ACR+ TASWVR AA +P + CEFFE++++AA+A + +PPG
Sbjct: 117 PQASASAARDSVDTACRRLTASWVRDKAASDPESTPLCEFFESFDRAAAAGDLSSFMPPG 176
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
VYTL DLR+ G+++ CPYFLAR MV++ANVVVYSYQYLLDPKVA I+S+EMQKE VVVF
Sbjct: 177 VYTLADLRSLGRERRICPYFLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVF 236
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIEALSVSVR+QTL+GA RNL RI+QEI+RFKATDA RLRAEYNRLV+GLA
Sbjct: 237 DEAHNIDNVCIEALSVSVRKQTLDGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLA 296
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
RGNLPI+DAWL+NP+LP DILKEAVPGNIR+AEHFL VL+RLV++L GRLETENVE E
Sbjct: 297 QRGNLPISDAWLANPSLPDDILKEAVPGNIRKAEHFLAVLKRLVKFLDGRLETENVENEM 356
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
PVSFVASI + AGIDQ+ LRFCY+RLHSL+LTLEITDTDEF+HIQTICDFATL+GTY+RG
Sbjct: 357 PVSFVASIHSQAGIDQRMLRFCYDRLHSLLLTLEITDTDEFMHIQTICDFATLIGTYSRG 416
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
FSIIIEP+D+RMP I DPV+QLSCHDASLA++PVF+RFQ+VVITSGTLSPI LYPRLLNF
Sbjct: 417 FSIIIEPYDDRMPEIRDPVIQLSCHDASLAIQPVFERFQTVVITSGTLSPITLYPRLLNF 476
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
PV+SRSF MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGV RNYG+LL+EM S VPD
Sbjct: 477 QPVISRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASSVPD 536
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GIVCFFVSYSYMD I+ +WN+ GIL++IMQHKLVFIET DVVETTLALDNYRKACDCGRG
Sbjct: 537 GIVCFFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRG 596
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK
Sbjct: 597 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 634
>gi|302816593|ref|XP_002989975.1| hypothetical protein SELMODRAFT_269587 [Selaginella moellendorffii]
gi|300142286|gb|EFJ08988.1| hypothetical protein SELMODRAFT_269587 [Selaginella moellendorffii]
Length = 752
Score = 1025 bits (2649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/632 (75%), Positives = 553/632 (87%), Gaps = 2/632 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F +E +TVYFPY+ IY EQY+YM+ELK ALDA+GHCLLEMPTGTGKTI LLSLITSY
Sbjct: 1 MKFVIEGLTVYFPYEFIYREQYAYMVELKHALDARGHCLLEMPTGTGKTITLLSLITSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA-AKILAIGLSSRKNLCVNS 119
L+ P + KLIYCTRTVHEMEK L EL+ LH YQ + +G + AKILA+GLSSRKNLC++
Sbjct: 61 LANP-SLAKLIYCTRTVHEMEKVLDELRRLHLYQEKEIGSSRAKILALGLSSRKNLCIHP 119
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
V + +R+SVDA CRK TASWVRA A NP+IETC F++ YEK S LPPGVYTL D
Sbjct: 120 VVSSETSRESVDAGCRKLTASWVRAAAETNPDIETCSFYQGYEKQGSEQPLPPGVYTLHD 179
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
LR +G+Q+GWCPYFLAR M+QFANVVVY+YQYLLDPKV+GIISKEMQKE +VVFDEAHNI
Sbjct: 180 LRVYGRQRGWCPYFLARQMIQFANVVVYNYQYLLDPKVSGIISKEMQKECIVVFDEAHNI 239
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCIEALSV++R+ L+GA+RN+ ++NQ I RFK TDA RLR EYNRLVEGLA +GNL
Sbjct: 240 DNVCIEALSVNLRQNNLDGASRNIHKLNQIISRFKETDANRLRQEYNRLVEGLAQQGNLH 299
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
+D WL+NP LP DIL+EAVPGNIRRAEHF+ L+R VQYLR RL+T+ V KEGPVSF
Sbjct: 300 GSDNWLANPVLPEDILREAVPGNIRRAEHFVAFLQRAVQYLRERLDTDTVVKEGPVSFTT 359
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
+++ AG+DQK L+FCY+RLHSL+LTLE+T+ DEFLH+QT+C+F TLVGTYTRGFSIIIE
Sbjct: 360 TMSTAAGLDQKALKFCYDRLHSLLLTLEVTEIDEFLHVQTVCNFLTLVGTYTRGFSIIIE 419
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
P+DERMPHIPDPVLQLSC DASLA+KPVFDRFQSVVITSGTLSPIDLYPRLLNF+PV+
Sbjct: 420 PYDERMPHIPDPVLQLSCLDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFNPVIIH 479
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
SF M+LTRDC+CPM+L RGSDQLPVS+KFDMRSDPGV RNYG+LL+EMV+ VPDG+VCFF
Sbjct: 480 SFTMTLTRDCLCPMILARGSDQLPVSSKFDMRSDPGVVRNYGRLLLEMVATVPDGVVCFF 539
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
VSYSYMD II +WN+ GIL+E+MQHKLVFIETQD VETTLAL+N+R+ACDCGRGAVFFSV
Sbjct: 540 VSYSYMDGIINSWNEMGILQEVMQHKLVFIETQDYVETTLALENFRQACDCGRGAVFFSV 599
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK
Sbjct: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
>gi|302771019|ref|XP_002968928.1| hypothetical protein SELMODRAFT_91042 [Selaginella moellendorffii]
gi|300163433|gb|EFJ30044.1| hypothetical protein SELMODRAFT_91042 [Selaginella moellendorffii]
Length = 768
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/632 (75%), Positives = 551/632 (87%), Gaps = 2/632 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F +E +TVYFPY+ IY EQY+YM+ELK ALDA+GHCLLEMPTGTGKTI LLSLITSY
Sbjct: 1 MKFVIEGLTVYFPYEFIYREQYAYMVELKHALDARGHCLLEMPTGTGKTITLLSLITSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA-AKILAIGLSSRKNLCVNS 119
L+ P + KLIYCTRTVHEMEK L EL+ LH YQ + +G + AKILA+GLSSRKNLC++
Sbjct: 61 LANP-SLAKLIYCTRTVHEMEKVLDELRRLHLYQEKEIGSSRAKILALGLSSRKNLCIHP 119
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
V +R+SVDA CRK TASWVRA A N +IETC F++ YEK S LPPGVYTL D
Sbjct: 120 VVSGETSRESVDAGCRKLTASWVRAAAETNLDIETCSFYQGYEKQGSEQPLPPGVYTLHD 179
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
LR +G+Q+GWCPYFLAR M+QFANVVVY+YQYLLDPKV+GIISKEMQKE +VVFDEAHNI
Sbjct: 180 LRVYGRQRGWCPYFLARQMIQFANVVVYNYQYLLDPKVSGIISKEMQKECIVVFDEAHNI 239
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCIEALSV++R+ L+GA+RN+ ++NQ I RFK TDA RLR EYNRLVEGLA +GNL
Sbjct: 240 DNVCIEALSVNLRQNNLDGASRNIHKLNQIISRFKETDANRLRQEYNRLVEGLAQQGNLH 299
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
+D WL+NP LP DIL+EAVPGNIRRAEHF+ L+R VQYLR RL+T+ V KEGPVSF
Sbjct: 300 GSDNWLANPVLPEDILREAVPGNIRRAEHFVAFLQRAVQYLRERLDTDTVVKEGPVSFTT 359
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
+++ AG+DQK L+FCY+RLHSL+LTLE+T+ DEFLH+QT+C+F TLVGTYTRGFSIIIE
Sbjct: 360 TMSTAAGLDQKALKFCYDRLHSLLLTLEVTEIDEFLHVQTVCNFLTLVGTYTRGFSIIIE 419
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
P+DERMPHIPDPVLQLSC DASLA+KPVFDRFQSVVITSGTLSPIDLYPRLLNF+PV+
Sbjct: 420 PYDERMPHIPDPVLQLSCLDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFNPVIIH 479
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
SF M+LTRDC+CPM+L RGSDQLPVS+KFDMRSDPGV RNYG+LL+EMV+ VPDG+VCFF
Sbjct: 480 SFTMTLTRDCLCPMILARGSDQLPVSSKFDMRSDPGVVRNYGRLLLEMVATVPDGVVCFF 539
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
VSYSYMD II +WN+ GIL+E+MQHKLVFIETQD VETTLAL+N+R+ACDCGRGAVFFSV
Sbjct: 540 VSYSYMDGIINSWNEMGILQEVMQHKLVFIETQDYVETTLALENFRQACDCGRGAVFFSV 599
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK
Sbjct: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
>gi|125550818|gb|EAY96527.1| hypothetical protein OsI_18432 [Oryza sativa Indica Group]
Length = 734
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/614 (79%), Positives = 548/614 (89%), Gaps = 11/614 (1%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M ELKRALDA+GH LLEMPTGTGKT AL+SLITSY L+ P P++LIYCTRTVHEMEKTL
Sbjct: 1 MGELKRALDARGHALLEMPTGTGKTAALISLITSYSLASPSRPLRLIYCTRTVHEMEKTL 60
Query: 85 AELKLLHNYQTRHLGPAAK--ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWV 142
AEL+LL HL AA +LA+GLSSRKNLCV+ + AA RDSVD ACR+ TASWV
Sbjct: 61 AELRLLFA----HLPAAASRSLLALGLSSRKNLCVHPQASAAAARDSVDTACRRLTASWV 116
Query: 143 RALAAENPN-IETCEFFENYEKAASA----AVLPPGVYTLQDLRAFGKQQGWCPYFLARH 197
R AA +P+ C+FFE++++AA+A + +PPGVYTL DLRA G+ +G CPYFLAR
Sbjct: 117 RDRAASDPDSTPLCDFFESFDRAAAAGDLASYMPPGVYTLADLRALGRDRGICPYFLARQ 176
Query: 198 MVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLE 257
MV++ANVVVYSYQYL+DPKVA I+S+EMQKE VVVFDEAHNIDNVCIEALSVS+R+QTLE
Sbjct: 177 MVKYANVVVYSYQYLIDPKVASIVSREMQKECVVVFDEAHNIDNVCIEALSVSIRKQTLE 236
Query: 258 GATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKE 317
GA RNL RI+QEI+RFKATDA RLRAEYNRLV+GLA RGNLPI+DAWL+NPALP DILKE
Sbjct: 237 GAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGNLPISDAWLANPALPEDILKE 296
Query: 318 AVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYE 377
AVPGNIRRAEHFL VLRRLV++L GRLETENVE E PV+FVASI + AGIDQK LRFCY+
Sbjct: 297 AVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPVAFVASIHSQAGIDQKMLRFCYD 356
Query: 378 RLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSC 437
RLHSLMLTLEITDTDEF+HIQTICDFATL+GTYTRGFSIIIEP+DERMP I DPV+QLSC
Sbjct: 357 RLHSLMLTLEITDTDEFMHIQTICDFATLIGTYTRGFSIIIEPYDERMPDIRDPVIQLSC 416
Query: 438 HDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTR 497
HDASLA++PVF+RFQ+VVITSGTLSPIDLYPRLLNF+PV+SRSF MSLTRDCICPMVLTR
Sbjct: 417 HDASLAIQPVFERFQTVVITSGTLSPIDLYPRLLNFNPVISRSFTMSLTRDCICPMVLTR 476
Query: 498 GSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGI 557
GSDQLPVSTKFDMRSDPGV RNYG+LL+EM S VPDGIVCFFVSYSYMD I+ +WN+ GI
Sbjct: 477 GSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSYSYMDGIVNSWNEMGI 536
Query: 558 LKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRL 617
L++IMQHKLVFIET DVVETTLALDNYRKACDCGRGA+FFSVARGKVAEGIDFDRHYGRL
Sbjct: 537 LQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAIFFSVARGKVAEGIDFDRHYGRL 596
Query: 618 VIMFGVPFQYTLSK 631
VIMFGVPFQYTLS+
Sbjct: 597 VIMFGVPFQYTLSR 610
>gi|357114542|ref|XP_003559059.1| PREDICTED: DNA repair helicase UVH6-like [Brachypodium distachyon]
Length = 752
Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/639 (73%), Positives = 539/639 (84%), Gaps = 15/639 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F L+ + V FPYD IYPEQ+ YM ELKRALDA+GH LLEMPTGTGKT AL+SLITSY
Sbjct: 1 MWFDLDGLPVCFPYDAIYPEQHEYMGELKRALDARGHALLEMPTGTGKTAALISLITSYA 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA--AKILAIGLSSRKNLCVN 118
L+ P P++L YCTRTVHEMEKTLAEL+LL + HL PA ++LA+GLSSRKNLCV+
Sbjct: 61 LANPSRPLRLFYCTRTVHEMEKTLAELRLLFS----HLPPADACRLLALGLSSRKNLCVH 116
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPNIET--CEFFENYEKAAS----AAVLPP 172
+V A+ +VD CR+ TASWV AA + T C++FE ++ AA A + P
Sbjct: 117 PQVSAS---GAVDTGCRRLTASWVCEKAAYDRESATPLCDYFETFDAAARKGDLALYIQP 173
Query: 173 GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
GVYTL DLR+ G+++ CPYFLARHMV+ ANVVVYSYQYLLDP+VA I+S EMQK+ VVV
Sbjct: 174 GVYTLADLRSLGRERRICPYFLARHMVKHANVVVYSYQYLLDPRVASIVSSEMQKDCVVV 233
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGL 292
FDE HNIDNVCIEALSVS+R+QT++GA NL I+Q+I+RFKATDA RL AEY RLV+GL
Sbjct: 234 FDEVHNIDNVCIEALSVSIRKQTIQGAKGNLRHISQQIDRFKATDASRLNAEYRRLVDGL 293
Query: 293 ALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKE 352
A RGNLPI+DAWL+N ALP DILKEAVPGNIR+AEHFL VL RLV+ L R++TENV E
Sbjct: 294 AQRGNLPISDAWLANLALPDDILKEAVPGNIRKAEHFLTVLWRLVRNLDERVDTENVVNE 353
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
PVSF SI + AGI+ TLRF Y+RL SL+LTLEITDTDEF+HIQ ICDFATL+GTY R
Sbjct: 354 RPVSFATSIYSLAGIETTTLRFLYDRLQSLLLTLEITDTDEFMHIQKICDFATLIGTYKR 413
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
GFSIIIEP+D+RMP I DPV+QLSCHDASLA++PVF+RFQ+VVITSGTLSPIDLYPRLLN
Sbjct: 414 GFSIIIEPYDDRMPDIRDPVIQLSCHDASLAIQPVFNRFQTVVITSGTLSPIDLYPRLLN 473
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
F+PV+SRSF MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGV RNYG+LL+EM S VP
Sbjct: 474 FNPVISRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVP 533
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR 592
DGIVCFFVSYSYMD I+++WND GIL+EIMQHKLVFIET DVVETTLALDNYRKACDCGR
Sbjct: 534 DGIVCFFVSYSYMDGIVSSWNDMGILQEIMQHKLVFIETPDVVETTLALDNYRKACDCGR 593
Query: 593 GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GAVFFSVARGKV EGIDF+RHYGRLVIMFGVPFQYTLSK
Sbjct: 594 GAVFFSVARGKVVEGIDFNRHYGRLVIMFGVPFQYTLSK 632
>gi|384253341|gb|EIE26816.1| DNA repair helicase [Coccomyxa subellipsoidea C-169]
Length = 771
Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/650 (65%), Positives = 520/650 (80%), Gaps = 20/650 (3%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F +E +TVYFPYD IYPEQ+ YMLELK ALDAKGHCLLEMPTGTGKTI LLSLITSY
Sbjct: 1 MRFVIEGLTVYFPYDYIYPEQFQYMLELKHALDAKGHCLLEMPTGTGKTITLLSLITSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA----KILAIGLSSRKNLC 116
L+ PE KLIYCTRTV EMEK LAELK L +Y+ R+ KILA+GLSSRKNLC
Sbjct: 61 LAHPEVG-KLIYCTRTVPEMEKVLAELKELVHYRDRYFHEPGMEPPKILALGLSSRKNLC 119
Query: 117 VNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT 176
V+ RV +R+S D+ CRK TASWVR NP+IETC F+E E A + V+ PGVYT
Sbjct: 120 VHPRVSEEGSRESCDSQCRKLTASWVREAHVTNPDIETCTFYEGLEAAGAEGVMEPGVYT 179
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPK---------VAGIISKEMQK 227
LQD+R +G+++GWCPYF ARHM+ FANV+VY+YQY+LDPK V+ ++S+E++K
Sbjct: 180 LQDMREYGRKKGWCPYFTARHMLAFANVMVYNYQYMLDPKASNAATLPPVSNMVSRELEK 239
Query: 228 ESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNR 287
E VVVFDEAHNIDNVCIEALSV++RRQTL+ A RN+ ++ +++ KATD RL+AEY R
Sbjct: 240 ECVVVFDEAHNIDNVCIEALSVTLRRQTLDSAMRNVGKLKAAVDKCKATDEQRLKAEYQR 299
Query: 288 LVEGLALRGNLPIA------DAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLR 341
L+ GL RG LP + WL+NPALP DIL+EAVPGNIRRAEHF L+RLV++L+
Sbjct: 300 LIGGLQERGALPRGRPTPGGEDWLANPALPEDILREAVPGNIRRAEHFCAFLKRLVEHLK 359
Query: 342 GRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTIC 401
GR+ + VE+E +F+A++ +D KTLRFCY+RL SL+ TLEITD D+F I +
Sbjct: 360 GRISVQAVEQESCTTFLATLQESMAVDGKTLRFCYDRLSSLLKTLEITDMDDFTPIHLVA 419
Query: 402 DFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTL 461
DFATLVGTY +GF+II+EP+D+R+P +PDPV+QLSC DASLAV+PVF +FQ+VVITSGTL
Sbjct: 420 DFATLVGTYAKGFAIIVEPYDDRLPSVPDPVIQLSCLDASLAVRPVFQKFQTVVITSGTL 479
Query: 462 SPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYG 521
SPIDLYPR+LNF+PV +SF M+LTRDC+CP+VLTRG+DQ VST FDMR D V RNYG
Sbjct: 480 SPIDLYPRILNFNPVAIQSFAMTLTRDCMCPVVLTRGADQAAVSTAFDMREDENVIRNYG 539
Query: 522 KLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLAL 581
++LVE+ + +PDGIVCFFVSYSYMD+I++ WND GIL+++M HKLVFIET DVVETTLAL
Sbjct: 540 RMLVELAAAIPDGIVCFFVSYSYMDKIVSKWNDMGILQDLMAHKLVFIETVDVVETTLAL 599
Query: 582 DNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
DN+R+ACDCGRGAVF SVARGKVAEGIDFDRHYGR V+MFGVP+QYTLS+
Sbjct: 600 DNFRRACDCGRGAVFLSVARGKVAEGIDFDRHYGRCVVMFGVPYQYTLSR 649
>gi|303271817|ref|XP_003055270.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463244|gb|EEH60522.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 741
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/639 (65%), Positives = 526/639 (82%), Gaps = 9/639 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MIF LE +TVYFPY+ +YPEQY YM ELKR LDAKGH LEMPTGTGKTI L+LITSY
Sbjct: 1 MIFNLEGLTVYFPYEYLYPEQYKYMQELKRGLDAKGHGCLEMPTGTGKTITCLALITSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L+ PE KLIYCTRTV EMEK LAEL++L Y+ +H+G AA +LA+GLSSRKN+CV+ R
Sbjct: 61 LAHPECG-KLIYCTRTVPEMEKVLAELRVLQAYREKHVGEAAAMLALGLSSRKNMCVHPR 119
Query: 121 VLAAENRDSVDAACRKRTASWVR-----ALAA-ENPNIETCEFFENYEKAASAAVLPPGV 174
V +R+SVDA CR+ TASWVR ALA+ E P E C+FFE+YE+ AVLPPGV
Sbjct: 120 VAEEGSRESVDARCRQLTASWVREKHNSALASGEEPTTELCQFFEDYEREGPDAVLPPGV 179
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
YTL DLR FG+ +GWCPYF ARHM++ +NV+VY+YQYLLDPKV+ ++S+E++KE VVVFD
Sbjct: 180 YTLADLRQFGRTKGWCPYFTARHMIKCSNVIVYNYQYLLDPKVSSLVSRELEKECVVVFD 239
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLAL 294
EAHNIDNVCIEALSV++R+QTL+ A RN++ ++ +IER K TD RLRAEY+ LV GLA
Sbjct: 240 EAHNIDNVCIEALSVNLRQQTLDVAGRNITALSAKIERAKQTDERRLRAEYDALVNGLAN 299
Query: 295 RGNLPIADA--WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKE 352
+G LP ++NP +P+DIL+EAVPGNIRRAEHF+ +RRLV+YL+ RL+ VE+E
Sbjct: 300 QGVLPRGGGEDAIANPVIPADILREAVPGNIRRAEHFVAFMRRLVEYLKQRLKATQVEQE 359
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
P++F+A ++ A ID KTL+FC++RL SL+ TLEI DT+EF + + DF TLVGTY +
Sbjct: 360 TPMAFLAHLSQTAAIDGKTLKFCHDRLTSLLKTLEIVDTEEFNAVSLVADFGTLVGTYEK 419
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
GF++I+EP+DER P+IPDPVLQLSC DASLA+ PVF+RF +V ITSGTLSPIDLYP+LL+
Sbjct: 420 GFALILEPYDERYPNIPDPVLQLSCLDASLAIAPVFERFDNVFITSGTLSPIDLYPKLLS 479
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
F+PV S M+LTRDC+CP+V+TRG+DQ VSTKFDMR DPGV +NYG++L++M + VP
Sbjct: 480 FNPVACISLPMTLTRDCLCPIVITRGADQQAVSTKFDMRDDPGVIQNYGRILIDMAASVP 539
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR 592
DG+V FFVSYSYM++I++ W+++G+L+ +MQHKLVFIETQDVVET+LALDNYR+AC+CGR
Sbjct: 540 DGLVAFFVSYSYMEQIVSKWHETGVLQNVMQHKLVFIETQDVVETSLALDNYRRACNCGR 599
Query: 593 GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GAVF SVARGKVAEGIDFDRHYGR VIM+GVP+QYTLS+
Sbjct: 600 GAVFLSVARGKVAEGIDFDRHYGRAVIMYGVPYQYTLSR 638
>gi|302836153|ref|XP_002949637.1| hypothetical protein VOLCADRAFT_59582 [Volvox carteri f.
nagariensis]
gi|300264996|gb|EFJ49189.1| hypothetical protein VOLCADRAFT_59582 [Volvox carteri f.
nagariensis]
Length = 780
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/652 (65%), Positives = 526/652 (80%), Gaps = 22/652 (3%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F LE +TVYFPY+ IYPEQY YMLELKRALDA+GHCLLEMPTGTGKTI LLSLITSY
Sbjct: 1 MKFNLEGLTVYFPYEYIYPEQYRYMLELKRALDARGHCLLEMPTGTGKTITLLSLITSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG--PAA-KILAIGLSSRKNLCV 117
L+ E KLIYCTRTV EMEK LAEL L +Y+ ++LG P + +ILA+GLSSRKNLC+
Sbjct: 61 LAHKEVG-KLIYCTRTVPEMEKVLAELAELIDYRAKYLGRGPGSNEILALGLSSRKNLCI 119
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAEN------------------PNIETCEFFE 159
+ RV +R+SVDA CR+ TASWVR AAE +IE C+FFE
Sbjct: 120 HPRVAEEGSRESVDAGCRRLTASWVRERAAERGARGGEGGAEEGGSGGSVADIELCDFFE 179
Query: 160 NYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAG 219
+E+A A+LPPGVYTL DLR FG+++GWCPYFLARHM+ FANVVVY+YQY++DPKV+
Sbjct: 180 GHERAGVEALLPPGVYTLSDLRDFGRKRGWCPYFLARHMMAFANVVVYNYQYMIDPKVSQ 239
Query: 220 IISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAG 279
++S+E++KE VVVFDEAHNIDNVCIEALSV++R+QTLE A RNL +++ I R + DA
Sbjct: 240 MVSRELEKECVVVFDEAHNIDNVCIEALSVNLRKQTLEAAGRNLGKLSNSIRRAREADAA 299
Query: 280 RLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQY 339
RL+ EYNRLV GL +G L + WL+NPALP D+++E VPGNIRRAEHF+ L R + +
Sbjct: 300 RLQGEYNRLVAGLVAQGALRGGEDWLANPALPEDVVQETVPGNIRRAEHFMGFLNRFLAF 359
Query: 340 LRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQT 399
LR ++ + V + P F+ + +D KTL+FCY+RL SL+ TLEIT+TDEF IQ
Sbjct: 360 LREKMASPVVTSQTPQVFLQELQERVQVDAKTLKFCYDRLSSLLKTLEITNTDEFTPIQL 419
Query: 400 ICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSG 459
+ DFATLVGTY +GF+II+EP+DER+P +PDPVLQLSC DASLA+KPVF +FQSVVITSG
Sbjct: 420 VADFATLVGTYAKGFAIIMEPYDERLPQVPDPVLQLSCLDASLAMKPVFSKFQSVVITSG 479
Query: 460 TLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARN 519
TLSPIDLYPR+LNF+PV +SF+M+LTRDC+CP+V+TRG+DQ+P+STKF+MR DPGV RN
Sbjct: 480 TLSPIDLYPRILNFNPVAIQSFQMTLTRDCLCPVVVTRGADQMPMSTKFEMRGDPGVMRN 539
Query: 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTL 579
YG+LLVE+ ++VPDGIV FFVSY YMD+II+ W+D GIL+EIMQHKL+FIETQDVVETTL
Sbjct: 540 YGRLLVELSAVVPDGIVAFFVSYRYMDQIISKWHDMGILQEIMQHKLIFIETQDVVETTL 599
Query: 580 ALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ALDN+R+ACD GRGAVF SVARGKVAEGIDFDRHYGR V+MFGVP+QYTLS+
Sbjct: 600 ALDNFRRACDSGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPYQYTLSR 651
>gi|255072415|ref|XP_002499882.1| predicted protein [Micromonas sp. RCC299]
gi|226515144|gb|ACO61140.1| predicted protein [Micromonas sp. RCC299]
Length = 797
Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/642 (64%), Positives = 522/642 (81%), Gaps = 12/642 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MIF LE +TVYFPY+ +YPEQY YMLELKRALDAKGH LEMPTGTGKTI LSLITSY
Sbjct: 1 MIFNLEGLTVYFPYEYLYPEQYRYMLELKRALDAKGHGCLEMPTGTGKTITCLSLITSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L PE KLIYCTRTV EMEK LAEL+ L Y+ +H+G A++I+A+GLSSRKN+C++ +
Sbjct: 61 LQNPECG-KLIYCTRTVPEMEKVLAELRNLQAYREKHVGKASQIMALGLSSRKNMCIHPK 119
Query: 121 VLAAENRDSVDAACRKRTASWVR--ALAA-------ENPNIETCEFFENYEKAASAAVLP 171
V +R+SVDA CR+ TASWVR +AA E CEFFE+YEK A+LP
Sbjct: 120 VADEGSRESVDANCRRLTASWVRDKHMAALANEEEAPENAPELCEFFEDYEKEGPNAILP 179
Query: 172 PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVV 231
PGVYTL DLR FG+++GWCPYFLARHM+ FANVVVY+YQYLLDPKVA ++S+E+++E VV
Sbjct: 180 PGVYTLADLRDFGRKKGWCPYFLARHMISFANVVVYNYQYLLDPKVANMVSRELERECVV 239
Query: 232 VFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEG 291
VFDEAHNIDNVCIEALSV++R+QTL+GA+RN++++ Q IE KA D RLR EY RLV G
Sbjct: 240 VFDEAHNIDNVCIEALSVNLRQQTLDGASRNIAQLTQRIEHVKAHDEQRLREEYTRLVNG 299
Query: 292 LALRGNLPIA--DAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
LA +G L A D ++NP + DIL+EAVPGNIRRAEHF+ LRR V+YL+ R+ +V
Sbjct: 300 LAQQGVLDRARSDQLIANPVISEDILREAVPGNIRRAEHFIAFLRRFVEYLKQRMRGGSV 359
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
E+E P++F+A + A ID KTL+FCY+R+ SL+ TLE+ DT++F I ICDFATLVGT
Sbjct: 360 EQETPIAFLAHLQQTAAIDGKTLKFCYDRITSLLKTLEVVDTEDFSAISLICDFATLVGT 419
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
Y +GF++I+EP+DER P+IPDPV QL+C DAS A+ PVFD+F SV ITSGTLSPI+LYP+
Sbjct: 420 YEKGFALILEPYDERYPNIPDPVFQLTCLDASYAIAPVFDKFNSVFITSGTLSPINLYPQ 479
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
LL F PV S + M+LTR+C+CPMV+TRG+DQ VSTKFDMR DPGV +NYG++L+++ S
Sbjct: 480 LLGFKPVCSAALDMTLTRECLCPMVITRGADQQMVSTKFDMRDDPGVIQNYGRVLIDLCS 539
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
VPDGIV FFVSYSYM++II+ W+++G+L+++M+ KLVF+ETQDVVET+LALDNYR+AC+
Sbjct: 540 CVPDGIVAFFVSYSYMEQIISKWHETGVLQQVMRRKLVFLETQDVVETSLALDNYRRACN 599
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
CGRGAVF SVARGK+AEGIDFDRHYGR VIM+GVP+QYTLS+
Sbjct: 600 CGRGAVFLSVARGKIAEGIDFDRHYGRAVIMYGVPYQYTLSR 641
>gi|145353086|ref|XP_001420860.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581095|gb|ABO99153.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 788
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/648 (63%), Positives = 503/648 (77%), Gaps = 18/648 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F LE + V+FPY IYPEQ + M E KR+LDA+GH +EMPTGTGKTI +LSL SY
Sbjct: 1 MDFNLEGLRVFFPYPQIYPEQLAMMTEFKRSLDARGHGAIEMPTGTGKTITVLSLCVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGP-AAKILAIGLSSRKNLCVNS 119
++ PE KLIYCTRTV EMEK LAE + L + G A +LA+GLSSRKN+CVN
Sbjct: 61 IAHPECG-KLIYCTRTVPEMEKVLAECRTLERFIAARAGEDVAAMLALGLSSRKNMCVNP 119
Query: 120 RVLAAENRDSVDAACRKRTASWVRAL--------AAENPNIE------TCEFFENYEKAA 165
RV+ +R+SVD CR+ TASWVR A+EN N+E CEFFE++E A
Sbjct: 120 RVVDEGSRESVDGKCRRLTASWVREKRLEREARGASENENVEDGGEGNCCEFFEDFESAG 179
Query: 166 SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM 225
AVLPPGVYTL DLRAFG+ + WCPYFLAR+M+ FANVVVY+YQY+LDPKVA ++S +
Sbjct: 180 EKAVLPPGVYTLHDLRAFGRTKKWCPYFLARNMISFANVVVYNYQYMLDPKVASLVSSSL 239
Query: 226 QKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEY 285
+KE +VVFDEAHNIDNVCIEALSV++R+QTLE A R+++ +N I+R K TD RLR EY
Sbjct: 240 EKECIVVFDEAHNIDNVCIEALSVNLRQQTLENAGRSITSLNTRIDRAKQTDERRLRQEY 299
Query: 286 NRLVEGLALRGNLPIADAW--LSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGR 343
RLV GLA +G L L NP +P DIL+EAVPGNIRRAEHF+ VL+R V+YL R
Sbjct: 300 ERLVNGLAQQGVLARGGGEDVLMNPIIPDDILREAVPGNIRRAEHFVAVLKRFVEYLNMR 359
Query: 344 LETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDF 403
L + VE+E P +F+ A+AGID KTL+FCY+RL SL+ TLE+ D DEF + + +F
Sbjct: 360 LRSTQVEQETPTAFLQHCAANAGIDGKTLKFCYDRLTSLLKTLEVVDMDEFNALSLVANF 419
Query: 404 ATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSP 463
A LVGTY+ GF++I+EP+DER P+IPDPVLQL+C DASLA+KPVF+RFQSV ITSGTLSP
Sbjct: 420 AALVGTYSNGFALILEPYDERYPNIPDPVLQLACLDASLAIKPVFERFQSVFITSGTLSP 479
Query: 464 IDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKL 523
IDLYP+LL F+PV RS M+LTRDC+CPMV+TRG+DQ VSTKFDMR DP V +NYG++
Sbjct: 480 IDLYPKLLGFNPVSVRSLAMTLTRDCLCPMVITRGADQQAVSTKFDMRDDPNVIQNYGRI 539
Query: 524 LVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDN 583
L+ + VPDGIV FFVSYSYM+ I++ W+++GIL+EIMQHKLVFIET DVVET+LALDN
Sbjct: 540 LIGLAQTVPDGIVAFFVSYSYMENIVSKWHETGILREIMQHKLVFIETTDVVETSLALDN 599
Query: 584 YRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
YR+AC+CGRGA+F SVARGKVAEGIDFDRHYGR V+M+GVP+QYTLS+
Sbjct: 600 YRRACNCGRGAIFLSVARGKVAEGIDFDRHYGRAVVMYGVPYQYTLSR 647
>gi|424513271|emb|CCO66855.1| predicted protein [Bathycoccus prasinos]
Length = 770
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/633 (61%), Positives = 480/633 (75%), Gaps = 26/633 (4%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M+ELK ALDAKGH LEMPTGTGKTI LLSLITSY L P + KLIYCTRTV EMEK L
Sbjct: 1 MIELKHALDAKGHGALEMPTGTGKTITLLSLITSYQLQYPHSCGKLIYCTRTVPEMEKVL 60
Query: 85 AELKLLHNYQTRHLGPAAK----ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTAS 140
AELK+L Y+ H+ + ILA+GLSSRKNLCVN +V +R+SVDA CR TAS
Sbjct: 61 AELKVLQKYREEHVEKGKEEETHILALGLSSRKNLCVNPKVSEEGSRESVDARCRNLTAS 120
Query: 141 WVRALAAENP--------NIET------------CEFFENYEKAASAAVLPPGVYTLQDL 180
WVR A E I+T CEF+E+ E + A +P GVYTLQDL
Sbjct: 121 WVRDKAKEEAEEGDQKGTKIKTVLENEKIRKSNLCEFYEDLEALGAEAEVPKGVYTLQDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
R FG+++ WCPYFLAR +Q ANVVVY+YQYLLDPKVAG++S+E + ++VVFDEAHNID
Sbjct: 181 REFGREKRWCPYFLARQTLQRANVVVYNYQYLLDPKVAGLVSREFEDNAIVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALSV++R QTL+ A RN++ +N I K TD RL+ EY RLV GLA +G +
Sbjct: 241 NVCIEALSVNLRSQTLDAAQRNITTLNTRITEVKKTDRKRLQDEYERLVSGLANQGAISR 300
Query: 301 --ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
+ ++NP + D+++E +PGNIRRAEHF+ ++RR V++LR L +V + P F+
Sbjct: 301 QRGEDLMANPVISEDVVQEVIPGNIRRAEHFVAIMRRFVEFLRHELRAPSVVQTAPRMFI 360
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
A G+D KTL+FCY+RL SL+ TLEI DT+EF + ++ DFATL+GTY +GF+II+
Sbjct: 361 QKSEAGGGVDAKTLKFCYDRLTSLLKTLEIVDTEEFGALSSVADFATLIGTYDQGFTIIM 420
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EP+DER PHIPDPVLQL+C DASLAVKPVF+++QSV ITSGTLSPIDLYPRLL F P V
Sbjct: 421 EPYDERYPHIPDPVLQLACLDASLAVKPVFEKYQSVFITSGTLSPIDLYPRLLKFRPNVM 480
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCF 538
+S M+LTR C+CPMV+TRG+DQ +S+KFDMR DP V +NYGK+LV + +PDGIV F
Sbjct: 481 KSLMMTLTRKCLCPMVITRGADQQHISSKFDMREDPNVIQNYGKVLVGLAQSIPDGIVAF 540
Query: 539 FVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS 598
FVSYSYM+ II+ W+D+GIL+EIMQHKL+F+ETQDVVET+LALDNYR+AC+ GRGAVF S
Sbjct: 541 FVSYSYMENIISKWHDTGILREIMQHKLIFMETQDVVETSLALDNYRRACNAGRGAVFLS 600
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
VARGKVAEGIDFDRHYGR V+M+GVP+QYTLS+
Sbjct: 601 VARGKVAEGIDFDRHYGRAVVMYGVPYQYTLSR 633
>gi|325186971|emb|CCA21515.1| predicted protein putative [Albugo laibachii Nc14]
Length = 801
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/656 (56%), Positives = 478/656 (72%), Gaps = 27/656 (4%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + V FPYD +Y EQ YM ELKRALDA GHC+LEMPTGTGKTI+LL+L+ +Y
Sbjct: 1 MKVDIDGLQVLFPYDRMYAEQLQYMRELKRALDAHGHCMLEMPTGTGKTISLLALVLAYR 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGP-AAKILAIGLSSRKNLCVNS 119
+ P KL+YCTRTV EM K + ELK L Y+T+ L A +I A+ LSSR+N+C++
Sbjct: 61 HAHPSTCGKLVYCTRTVTEMAKCVEELKSLMEYRTQILSTEATQITAVCLSSRRNMCIHE 120
Query: 120 RVLA-AENRDSVDAACRKRTASWVRALAAENP--------NIETCEFFENYE-KAASAAV 169
+VL + + +SVD+ CRK TASWVRA A E P I+ C ++E YE + +
Sbjct: 121 KVLENSTDGESVDSQCRKMTASWVRARAIETPIEQAVSNNGIDLCSYYEQYEARKQDQQL 180
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
LPPGVY+L DL+ GK++GWCPYFL RH+V FA+V+VY+YQY+LDPKV+ ++S+ +KES
Sbjct: 181 LPPGVYSLDDLKRLGKEKGWCPYFLTRHVVNFADVIVYNYQYMLDPKVSQLVSRAFEKES 240
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
++VFDEAHNIDNVCIEALSV + R++L+ A+RNL I+ +++R K D RL AEY RLV
Sbjct: 241 IIVFDEAHNIDNVCIEALSVDLNRRSLDRASRNLGSISTQVQRLKQADRSRLDAEYRRLV 300
Query: 290 EGLALRGNL---------------PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLR 334
EGL N+ D SNP LP D+L+EA+PGNIRRAEHF+ +R
Sbjct: 301 EGLRASNNILAPTYQNRATGQSIDTTNDILTSNPVLPDDVLEEAIPGNIRRAEHFIAFMR 360
Query: 335 RLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEF 394
RL++YLR RL NVE E P +F+ + ++ K ++FCY RL+SL+ TLEIT +EF
Sbjct: 361 RLIEYLRTRLRVGNVESETPQAFLHHLNQVISMETKPMKFCYTRLNSLLRTLEITKLEEF 420
Query: 395 LHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSV 454
+ + +FATL+ TY GF +I++P D PDPVL L+C DASLA++PV +RF SV
Sbjct: 421 QALTDVANFATLLATYADGFMLIVDPLDN-ASGAPDPVLHLACLDASLAIRPVLERFSSV 479
Query: 455 VITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDP 514
+ITSGTLSPIDLYPRLLNF PV+ S MS+ R CICP+ +TRGSDQ+PVSTKFD+R D
Sbjct: 480 IITSGTLSPIDLYPRLLNFSPVIRESLPMSVYRSCICPLTITRGSDQMPVSTKFDLRDDL 539
Query: 515 GVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV 574
V RNYG LL+EM + PDG+VCFF SY YM++II W+ G+LK ++Q KL+FIET D+
Sbjct: 540 SVVRNYGTLLLEMAAHCPDGMVCFFPSYLYMEKIIGQWDQLGVLKRVLQFKLLFIETTDI 599
Query: 575 VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
VETTLAL+NY++ACDCGRGA+FFSVARGKVAEGIDFDRHYGR VI+FG+PFQYTLS
Sbjct: 600 VETTLALNNYKRACDCGRGAIFFSVARGKVAEGIDFDRHYGRCVILFGIPFQYTLS 655
>gi|422296028|gb|EKU23327.1| DNA excision repair protein ERCC-2, partial [Nannochloropsis
gaditana CCMP526]
Length = 937
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/641 (56%), Positives = 486/641 (75%), Gaps = 14/641 (2%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
F L+ + ++FPYD +Y EQY+YMLELKRALDAKGHCLLEMPTGTGKT+ L+SLITSY +
Sbjct: 4 FDLDGLDLFFPYDRLYEEQYNYMLELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFA 63
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGP-AAKILAIGLSSRKNLCVNSRV 121
PE KLIYCTRTV EM K + E++ + +Y+ + +G K+LA+ LSSR+NLC++ RV
Sbjct: 64 HPEVG-KLIYCTRTVPEMVKCVEEVRKVIDYRVKCIGAEGGKVLAVCLSSRRNLCIHERV 122
Query: 122 LAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLR 181
+ +R++VD+ACR TASWVR A + N+E C+++E YEK + A + G+Y+L DL+
Sbjct: 123 MEESDREAVDSACRSMTASWVRQRGATSANVELCQYYEEYEKNGTDAGIAHGIYSLDDLK 182
Query: 182 AFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
GK +GWCPYFLARH++ AN+++Y+YQY+LDPKVAG++SKE++ ES+VVFDEAHNIDN
Sbjct: 183 ELGKDRGWCPYFLARHIINHANILIYNYQYVLDPKVAGLVSKELEAESIVVFDEAHNIDN 242
Query: 242 VCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIA 301
VCIEALSV + ++L+ ATR L +++ E+ + K DA +L EY RLV GLA G L A
Sbjct: 243 VCIEALSVELDERSLDKATRCLGKLSTEVSKMKQKDANKLNEEYQRLVRGLAESGALGGA 302
Query: 302 ----------DAWLSNPA--LPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
DA L+NP LP + +EAVPGNIRRAEHFL ++++V++L+ L ++
Sbjct: 303 AGAGSAASPADAMLANPVPRLPDALAQEAVPGNIRRAEHFLTFMKKVVEHLKTLLRVDST 362
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
+K+ P++F+ + ++ K LRF Y RL+SL+ TLE+T DEF +Q + DFATLV T
Sbjct: 363 QKQSPLAFLHYLQTKTALEVKPLRFTYSRLNSLLRTLEVTHLDEFNPLQDVADFATLVAT 422
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
Y GF++I EP +P + PVLQLSC DASLA+KPVF+RF+SV+ITSGTLSP+DLYP
Sbjct: 423 YAEGFTVITEPQGSSIPGLRQPVLQLSCLDASLAIKPVFERFKSVIITSGTLSPLDLYPT 482
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
LL+F PVV +S MS+ R ICP+V+T+GS Q ++T+F+ R DP V R+YG+LLVE+ +
Sbjct: 483 LLSFTPVVRQSMDMSMFRKSICPLVVTKGSGQQVITTRFEKRDDPSVTRDYGELLVEIAT 542
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
VPDG+VCFF SYSYM+ ++ W D GIL++I++ KL+FIET+DVVETTLALDN+R+ACD
Sbjct: 543 HVPDGVVCFFTSYSYMERVVQEWEDGGILRQILERKLIFIETKDVVETTLALDNFRRACD 602
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
GRGA+F SVARGKVAEGIDFDRHYGR VI+ GVPFQYTLS
Sbjct: 603 SGRGAIFLSVARGKVAEGIDFDRHYGRAVILIGVPFQYTLS 643
>gi|301097762|ref|XP_002897975.1| TFIIH basal transcription factor complex helicase subunit
[Phytophthora infestans T30-4]
gi|262106420|gb|EEY64472.1| TFIIH basal transcription factor complex helicase subunit
[Phytophthora infestans T30-4]
Length = 763
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/647 (56%), Positives = 478/647 (73%), Gaps = 30/647 (4%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + V FPY+ +Y EQ YM ELKRALDA+GHC+LEMPTGTGKT++LLSL+ +Y
Sbjct: 1 MKVDIDGLEVVFPYERMYSEQLQYMRELKRALDAQGHCMLEMPTGTGKTVSLLSLVLAYK 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KL+YCTRTV EM K + E+K L Y+ + G A++ A+ LSSR+N+CV+ R
Sbjct: 61 AAHP-TAGKLVYCTRTVPEMAKCVEEIKKLIKYREHYYGDKAQVTAVCLSSRRNMCVHPR 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE-KAASAAVLPPGVYTLQD 179
V+A + + VD CRK TASWV ETC F+ENY+ + ++ VLPPGVY++ D
Sbjct: 120 VMAHADGEDVDGQCRKMTASWV----------ETCSFYENYDARKSNDTVLPPGVYSVDD 169
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L+ G ++GWCPYFL R++V FA+VVVY+YQY+LDPKV+ ++S+ +KES+VVFDEAHNI
Sbjct: 170 LKELGVKKGWCPYFLTRYVVTFADVVVYNYQYMLDPKVSQLVSRSFEKESIVVFDEAHNI 229
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCIEALSV + R++L+ A+RNL+ ++ ++ + K D RL AEY RLVEGL N
Sbjct: 230 DNVCIEALSVDLDRRSLDRASRNLTTLSGQVNKLKQADKSRLDAEYRRLVEGLR-SSNAV 288
Query: 300 IA----------------DAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGR 343
+A D ++NP LP D+L EA+PGNIRRAEHF+ +RRL++YLR R
Sbjct: 289 VAPSYTDPATNQAIDTSNDIMIANPVLPDDVLDEAIPGNIRRAEHFVAFMRRLIEYLRQR 348
Query: 344 LETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDF 403
+ VE E P +F+ + ++ K ++FCY RL+SL+ TLE+T+ +E+ + + DF
Sbjct: 349 IRVRQVESETPQAFLHHLHQAINMEIKPMKFCYTRLNSLLRTLEVTNLEEYNSLTDVADF 408
Query: 404 ATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSP 463
ATLV TY GF +IIEPFD + DPVLQLSC DASLA++PVF+RF SVVITSGTLSP
Sbjct: 409 ATLVATYAEGFMLIIEPFDS-ASGVHDPVLQLSCLDASLAIRPVFERFSSVVITSGTLSP 467
Query: 464 IDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKL 523
IDLYPRLLNF+PV+ S MS+ R ICP+V+TRGSDQ+PVSTKFD+R D V RNYG L
Sbjct: 468 IDLYPRLLNFNPVIRESLPMSVYRSSICPLVITRGSDQMPVSTKFDLRDDLSVVRNYGTL 527
Query: 524 LVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDN 583
L+EM + PDG+VCFF SY YM++II W+ G+LK ++ KL+FIET+D+VETTLALDN
Sbjct: 528 LLEMAACTPDGMVCFFPSYLYMEKIIGQWDSLGVLKRVLSSKLLFIETKDIVETTLALDN 587
Query: 584 YRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
Y+KACDCGRGA+FFSVARGKVAEGIDFDRHYGR VI+FG+PFQYTLS
Sbjct: 588 YKKACDCGRGAIFFSVARGKVAEGIDFDRHYGRAVILFGIPFQYTLS 634
>gi|320166669|gb|EFW43568.1| nucleotide excision repair protein [Capsaspora owczarzaki ATCC
30864]
Length = 747
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/607 (57%), Positives = 465/607 (76%), Gaps = 1/607 (0%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
MLELKR++DAKGHC+LEMP+GTGKTI+LLSLI S+ + P+ KLIYC+RTV E+EK L
Sbjct: 1 MLELKRSIDAKGHCVLEMPSGTGKTISLLSLIISHQMVNPQMG-KLIYCSRTVPEIEKVL 59
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
E+ L Y G K L +GLS+RKN+C++ V + VD+ CR+ TASWVR
Sbjct: 60 DEMTKLVAYIESETGQRLKFLGLGLSARKNMCIHPEVSKERDGKLVDSKCRELTASWVRT 119
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
A N +E C F+E ++++ A+LP GVYTL +LRAFG++Q WCPY+LARHM+ FANV
Sbjct: 120 RAENNSEVELCSFYEEFDRSGREALLPAGVYTLDELRAFGQRQNWCPYYLARHMISFANV 179
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
+VYSY YLLDPK+A ++SKE+ KESVVVFDEAHNIDNVCIE++SV + ++TL+ +TRNL+
Sbjct: 180 IVYSYHYLLDPKIANLVSKELAKESVVVFDEAHNIDNVCIESMSVEITKRTLDNSTRNLN 239
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ I K TD RL+ EY RLV+GL D L+NP LP +I++EAVPG IR
Sbjct: 240 ALASTISEIKQTDTARLQDEYTRLVQGLREANTARETDLVLANPVLPDEIMQEAVPGTIR 299
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
RAEHF+ LRR V+YL+ RL ++V E P SF+ + ID+K LRFC ERL SL+
Sbjct: 300 RAEHFVAFLRRFVEYLKNRLRVQHVVAENPTSFLQDLYQAVQIDRKPLRFCAERLGSLVR 359
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLE+ + D+F + T+ +FATLV TY +GFS+IIEPFD+R P IP+PVL SC DASLA+
Sbjct: 360 TLELPNMDDFSALVTVANFATLVSTYAKGFSLIIEPFDDRTPTIPNPVLYFSCMDASLAI 419
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KP+FDRFQ+VVITSGTLSPI++YP++LNF PV ++SF M+L+R+C+CP+++TRGSDQ+ V
Sbjct: 420 KPIFDRFQTVVITSGTLSPIEMYPKILNFQPVTAQSFTMTLSRNCVCPVIVTRGSDQVAV 479
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S++F +R DP V RNYG LLV++ ++VPDG+VCFF SY+YM+ I+A W++ G+L ++++
Sbjct: 480 SSRFQVRDDPAVVRNYGSLLVDLSAVVPDGLVCFFPSYTYMESIVAKWHEQGVLTNLLRN 539
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KLVFIETQD ET++ALDNY+KAC+ GRGAV SVARGKV+EGIDFD HYGR VI+FG+P
Sbjct: 540 KLVFIETQDGAETSIALDNYQKACENGRGAVLLSVARGKVSEGIDFDHHYGRAVILFGIP 599
Query: 625 FQYTLSK 631
+ YT S+
Sbjct: 600 YVYTESR 606
>gi|348678980|gb|EGZ18797.1| hypothetical protein PHYSODRAFT_354695 [Phytophthora sojae]
Length = 791
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/665 (55%), Positives = 485/665 (72%), Gaps = 36/665 (5%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + V FPY+ +Y EQ YM ELKRALDA+GHC+LEMPTGTGKT++LL+L+ +Y
Sbjct: 1 MKVDIDGLEVLFPYERMYSEQLQYMRELKRALDAQGHCMLEMPTGTGKTVSLLALVLAYK 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGP-AAKILAIGLSSRKNLCVNS 119
+ P KL+YCTRTV EM K + E+K L Y+T H G A++ A+ LSSR+N+CV+
Sbjct: 61 HAHP-TAGKLVYCTRTVPEMAKCVEEIKKLAQYRTAHYGADKAQLTAVCLSSRRNMCVHP 119
Query: 120 RVLAAENRDSVDAACRKRTASWVRAL---------AAENP--------NIETCEFFENYE 162
RV+A + + VD CRK TASWVRA + + P +ETC F+ENY+
Sbjct: 120 RVMAHADGEDVDGQCRKMTASWVRARAAKAREAAASGDVPMDGGEQVREVETCSFYENYD 179
Query: 163 -KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
+ + VLPPG+Y++ DL+ G ++GWCPYFL R++V FA+VVVY+YQY+LDPKV+ ++
Sbjct: 180 ARKSDDTVLPPGIYSVDDLKEIGAKKGWCPYFLTRYVVTFADVVVYNYQYMLDPKVSQLV 239
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRL 281
S+ +KES+VVFDEAHNIDNVCIEALSV + R++L+ A+RNL+ ++ ++ + K D RL
Sbjct: 240 SRSFEKESIVVFDEAHNIDNVCIEALSVDLDRRSLDRASRNLTTLSSQVNKLKQADKARL 299
Query: 282 RAEYNRLVEGL--------------ALRGNLPIA-DAWLSNPALPSDILKEAVPGNIRRA 326
AEY RLV+GL A N+ + D ++NP LP D+L EA+PGNIRRA
Sbjct: 300 DAEYRRLVDGLRSSNAVVAPSYSDPATNRNIDTSNDIMIANPVLPDDVLDEAIPGNIRRA 359
Query: 327 EHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386
EHF+ +RRL++YLR R+ VE E P +F+ + ++ K ++FCY RL+SL+ TL
Sbjct: 360 EHFVAFMRRLIEYLRQRIRVRQVESETPQAFLHHLHQAINMEIKPMKFCYTRLNSLLRTL 419
Query: 387 EITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKP 446
E+T+ +E+ + + DFATLV TY GF +IIEPFD + DPVLQLSC DASLA++P
Sbjct: 420 EVTNLEEYNALTDVADFATLVATYAEGFMLIIEPFDS-ASGVHDPVLQLSCLDASLAIRP 478
Query: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVST 506
VF+RF SV+ITSGTLSPIDLYPRLLNF+PV+ S MS+ R ICP+V+TRGSDQ+PVST
Sbjct: 479 VFERFSSVIITSGTLSPIDLYPRLLNFNPVIRESLPMSVYRSSICPLVITRGSDQMPVST 538
Query: 507 KFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKL 566
KFD+R D V RNYG LL+EM S PDG+VCFF SY YM++II W+ G+LK ++ KL
Sbjct: 539 KFDLRDDMSVVRNYGTLLLEMASCTPDGMVCFFPSYLYMEKIIGQWDSLGVLKRVLSSKL 598
Query: 567 VFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626
+FIET+D+VETTLALDNY+KACDCGRGA+FFSVARGKVAEGIDFDRHYGR VI+FG+PFQ
Sbjct: 599 LFIETKDIVETTLALDNYKKACDCGRGAIFFSVARGKVAEGIDFDRHYGRAVILFGIPFQ 658
Query: 627 YTLSK 631
YTLS
Sbjct: 659 YTLSN 663
>gi|198412602|ref|XP_002126055.1| PREDICTED: similar to ERCC2/XPD gene product [Ciona intestinalis]
Length = 760
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/631 (54%), Positives = 458/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQYSYMLELKR LDAKGH +LEMP+GTGKT LLSLI +Y
Sbjct: 1 MKINVDGLLVYFPYEFIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTATLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE KLIYC+RTV E+EK L EL+ L Y + +G K+ A+ LSSRKNLC+N+
Sbjct: 61 YEYPEIISKLIYCSRTVPEIEKVLEELRRLMEYYEKEVGEVPKLCALALSSRKNLCINAS 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V A VD C + TAS VR + ++E C F+E ++ LP GVY L DL
Sbjct: 121 VRGARIGKEVDTKCHQLTASHVRIKQKHDASVELCSFYEQFDANGREEALPAGVYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
R +GK + WCPYFLAR+ + AN+VVYSY YLLDPK+A ++SKE+ K +VVVFDEAHNID
Sbjct: 181 RRYGKLRNWCPYFLARYTITHANIVVYSYHYLLDPKIADLVSKELSKNAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ ++N+ + +E+ + TD +LR EY RLVEGL
Sbjct: 241 NVCIDSMSVTISRRTLDKCSQNIQSLQNHLEKSRQTDEDKLRNEYKRLVEGLREANIARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
AD L+NP +P D+LKE+VPGNIR AEHFL ++R +YL+ RL +V E P+SF+
Sbjct: 301 ADVVLANPVIPDDVLKESVPGNIRNAEHFLAFMKRFNEYLKSRLRVRHVVSETPLSFIHD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
ID+K LRFC ERL SL+ TLE+ + +F ++ + +FA+LV TY +GF ++IEP
Sbjct: 361 AFEQVCIDKKPLRFCSERLRSLLQTLELANMSDFSNLTLLANFASLVSTYNKGFVVLIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DAS+A+KPVF RFQSV+ITSGTLSP+D+YPR+L+FHPV +
Sbjct: 421 FDDRTPTIVNPILHFSCMDASVAIKPVFSRFQSVIITSGTLSPLDMYPRILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CP+V+T G+DQ+ +S+KF+ R D V RNYG LLVEM IVPDGIVCFFV
Sbjct: 481 FTMTLARQCLCPVVVTHGNDQVAISSKFETREDVAVIRNYGNLLVEMTKIVPDGIVCFFV 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY+YM+ I+A+W + GIL+ + ++KL+FIETQD ET++ALD Y++AC+ GRGAV SVA
Sbjct: 541 SYAYMENIVASWYEQGILENVQKNKLLFIETQDAAETSMALDKYQEACENGRGAVLLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF H+GR VIMFG+P+ YT S+
Sbjct: 601 RGKVSEGIDFTHHHGRAVIMFGIPYVYTQSR 631
>gi|348537926|ref|XP_003456443.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Oreochromis niloticus]
Length = 760
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/631 (55%), Positives = 460/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +E + VYFPYD IYPEQYSYMLELKR LDAKGH +LEMP+GTGKTI+LLSLI +Y
Sbjct: 1 MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L + T+ G + LA+ LSSRKNLC++
Sbjct: 61 RAFPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYTKETGESNNFLALALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + VD C TAS++RA NPN+ C F+E ++ LP G+Y L DL
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQHHSNPNLPVCRFYEEFDSVGRQVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+AFG+++GWCPY+LAR+ + AN+VVYSY YLLDPK+A ++SKE+ K+SVVVFDEAHNID
Sbjct: 181 KAFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ N+ + I + K TDA +LR EY RLVEGL
Sbjct: 241 NVCIDSMSVNITRRTLDRCQNNVDTLQNTIHKIKETDAAKLREEYRRLVEGLKEANVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +L+NP LP +IL+EAVPG+IR AEHF+ +RR ++YL+ RL ++V +E F+
Sbjct: 301 TDIYLANPVLPDEILQEAVPGSIRTAEHFVGFMRRFLEYLKSRLRVQHVVQESAPQFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I ID+K LRFC ERL SL+ TLEI D +F + I +FATLV TY++GF+IIIEP
Sbjct: 361 IFDKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F++R P I +PVL SC D S+A+KPVF RFQSVVITSGTLSP+D+YPR+L+F PV S
Sbjct: 421 FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVVITSGTLSPLDIYPRILDFRPVTMAS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CP+++ RG+DQ+ +S+KF+ R D V RNYG LL+EM +IVPDGIV FF
Sbjct: 481 FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ I+A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYVYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR V+MFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVLMFGVPYVYTQSR 631
>gi|224001022|ref|XP_002290183.1| nucleotide excision repair protein ERCC2 [Thalassiosira pseudonana
CCMP1335]
gi|220973605|gb|EED91935.1| nucleotide excision repair protein ERCC2 [Thalassiosira pseudonana
CCMP1335]
Length = 770
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/646 (56%), Positives = 468/646 (72%), Gaps = 17/646 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F LE + V+FPYD IY EQY YM LK+ LDA GHCLLEMPTGTGKT+ LLSLITSY
Sbjct: 1 MRFNLEGLDVFFPYDRIYLEQYQYMRALKQTLDAGGHCLLEMPTGTGKTVCLLSLITSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L+ P N KL+YCTRTV EM + EL + Y++ LG + +LA+ LSSR+N+C++ R
Sbjct: 61 LANP-NCGKLVYCTRTVPEMNSVMEELGTVLAYRSEQLGAGSGVLALCLSSRRNMCIHER 119
Query: 121 VLAAENRDSVDAACRKRTASWV--RALAAENPN----IETCEFFENYEKAASAAVLPPGV 174
VL +R+ +DAACR TA W +A A +ETCE+++ ++ A A +P GV
Sbjct: 120 VLRESDREGIDAACRSMTAPWAIEKAQKARQQQSAQVVETCEYYDGFQSAGEATSMPSGV 179
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
Y L++LR +GK + WCPY+L R + A+V+V++YQY+LDPKVA ++SKE++ ES++VFD
Sbjct: 180 YDLEELRKWGKNKNWCPYYLTRQAINHASVLVFNYQYMLDPKVAKMVSKELESESIIVFD 239
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLAL 294
EAHNID+VCIEALSV + + LE ATR+L R++ E+ R KA+D RL+AEY LV GL
Sbjct: 240 EAHNIDSVCIEALSVDIHERNLEQATRSLGRLSSEVSRIKASDGARLQAEYQNLVNGLVD 299
Query: 295 RGNL--PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLET-----E 347
+G L P A LS+ L D++ EAVPGNIRRAEHF+ ++++V++L+ RL
Sbjct: 300 QGLLDAPAAAVGLSSNVLSPDVINEAVPGNIRRAEHFIAFMKKIVEHLKTRLRAVSGPRG 359
Query: 348 NVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLV 407
V E P++F+ + ++ K L+F Y RL SL+ TL++ + D+F + + DFA+LV
Sbjct: 360 GVISETPLAFLHRMITTTSLEAKPLKFAYSRLSSLLRTLQVPNLDDFNALTDVADFASLV 419
Query: 408 GTYTRG---FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI 464
TY G F+II+EP +P DPV+QL+C DASLA+ P+F RF SVVITSGTLSPI
Sbjct: 420 ATYAEGLPRFAIIMEPNGSSIPGALDPVIQLACLDASLAIAPLFKRFGSVVITSGTLSPI 479
Query: 465 DLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLL 524
DLYP+LL F P VS SF MS R CI P+V+TRGSDQLPVSTKFD R D GV RNYG +L
Sbjct: 480 DLYPKLLQFEPCVSESFNMSTFRPCIRPLVITRGSDQLPVSTKFDDRDDMGVVRNYGSML 539
Query: 525 VEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY 584
VE+ S +PDG+V FF SYSYM+ II+ W+ GIL+++ + KLVFIET+DVVETTLALDNY
Sbjct: 540 VELCSSIPDGVVAFFTSYSYMESIISEWDGMGILRQLTKSKLVFIETKDVVETTLALDNY 599
Query: 585 RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
R+ACD GRGAVF SVARGKV+EGI+FDRHYGR VIMFGVPFQYTLS
Sbjct: 600 RRACDSGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLS 645
>gi|156400058|ref|XP_001638817.1| predicted protein [Nematostella vectensis]
gi|156225941|gb|EDO46754.1| predicted protein [Nematostella vectensis]
Length = 735
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/607 (56%), Positives = 450/607 (74%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
MLELKR LDAKGHCLLEMP+GTGKT++LLSLI +Y+ +KP KLIYC+RTV E+EK +
Sbjct: 1 MLELKRTLDAKGHCLLEMPSGTGKTVSLLSLIVAYLKNKPLELTKLIYCSRTVPEIEKVM 60
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
ELK L Y G ILA+ LSSRKNLC++ V VD C TAS+VR
Sbjct: 61 EELKKLTEYYESETGEKPNILALALSSRKNLCIHPEVAGEREGKKVDGKCLSMTASFVRL 120
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
E+ ++ C F+E+++ +PPG Y L DLR FG+++GWCPYFLAR + ANV
Sbjct: 121 KHKEDSSVPVCNFYEDFDSLGRDEKMPPGSYNLDDLRQFGRKKGWCPYFLARRAIYHANV 180
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
+VYSY Y+LDPK+A ++SKE+ K++VVVFDEAHNIDNVCI+++SV++ R+TL+ + N+
Sbjct: 181 IVYSYHYMLDPKIADLVSKELDKKAVVVFDEAHNIDNVCIDSMSVTISRRTLDRSHANVE 240
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ I+R KATDA +LR EYNRLVEGL D LSNP LP ++L+E+VPGNIR
Sbjct: 241 SLASVIDRIKATDAQKLREEYNRLVEGLRQASEARDTDIVLSNPVLPDEVLQESVPGNIR 300
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
+AEHF+ +RR ++YL+ RL ++V +E P+SF+ I I++K LRFC ERL SL+
Sbjct: 301 KAEHFVGFMRRFIEYLKTRLRIQHVVQESPMSFLQHIYQQVCIERKPLRFCAERLSSLLR 360
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLEI + ++ + I +FATLV TY +GF+IIIEPFD+R P IP+P+L SC DAS+AV
Sbjct: 361 TLEIPEMQDYGPLVLIANFATLVSTYNKGFNIIIEPFDDRTPTIPNPILHFSCMDASIAV 420
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KPVFDRFQSVVITSGTLSPID+YP++L+F PV +F M+L R C+CPM+++RGSDQ+ +
Sbjct: 421 KPVFDRFQSVVITSGTLSPIDMYPKILDFRPVTMATFTMTLARTCLCPMIVSRGSDQVAM 480
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
+TKF+MR D V RNYG LL EM ++VPDGIVCFF SY YM+ +++ W+D GI+ I ++
Sbjct: 481 TTKFEMREDLAVIRNYGNLLTEMSAVVPDGIVCFFTSYLYMESVVSLWHDQGIISNIQKN 540
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+FIET D ET+LAL NY+KAC+ GRGA+ SVARGKV+EGIDFD HYGR VIMFG+P
Sbjct: 541 KLLFIETTDAAETSLALHNYQKACENGRGAILLSVARGKVSEGIDFDHHYGRAVIMFGIP 600
Query: 625 FQYTLSK 631
+ YT S+
Sbjct: 601 YVYTQSR 607
>gi|449018319|dbj|BAM81721.1| DNA excision repair protein ERCC2/XPD [Cyanidioschyzon merolae
strain 10D]
Length = 782
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/652 (53%), Positives = 479/652 (73%), Gaps = 25/652 (3%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MIF +E+V VYFPYD +YPEQY+YM ELKRALD+ GHC+LEMPTGTGKT+ LLS ITSY
Sbjct: 1 MIFNVENVKVYFPYDYVYPEQYAYMRELKRALDSNGHCILEMPTGTGKTVTLLSFITSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK------ILAIGLSSRKN 114
L+ E KLIYCTRTV E+EK L+EL+++ Y+ L A K +LA+GL++R+N
Sbjct: 61 LAHREVR-KLIYCTRTVGELEKVLSELEVVIRYRDAQLEKAGKRDQAAAVLAVGLTTRRN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVR-------ALAAENPNIET-----CEFFENYE 162
LC+ S V AE+R+ D+ CR TASWVR A +NP++E C+F+E Y
Sbjct: 120 LCLQSAVSKAESREEADSLCRSLTASWVRESHSAAIARFEKNPDLEDLPTTLCQFYEGYR 179
Query: 163 KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS 222
+ + A+LP G+YTL+ + G+++GWCPY+ RH + FANV+VY+YQYLLDPK+AG+IS
Sbjct: 180 REGNDAILPSGIYTLEKVLQIGRERGWCPYYTVRHTMNFANVIVYNYQYLLDPKIAGLIS 239
Query: 223 KEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR 282
+E+ +E +VVFDEAHNIDNVCI+ALSVS+R L A N+ + I+ + D RL
Sbjct: 240 RELSRECIVVFDEAHNIDNVCIDALSVSLRLDDLRRAQANVVSLRNRIQEIRTHDERRLL 299
Query: 283 AEYNRLVEGLALRGNLPIADAWL--SNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYL 340
EY R+++G+ ++ DA+ ++P +P D+L+E +PGNIRR EHFL L RL+ +
Sbjct: 300 EEYRRILQGIRRPADV---DAFTIEASPVIPEDVLQETIPGNIRRGEHFLLFLLRLIDFF 356
Query: 341 RGRLETENVEKEGPVSFVASITAHAGI-DQKTLRFCYERLHSLMLTLEITDTDEFLHIQT 399
R R+ + V ++ P +F+ ++ I D K LRFC +RL SL+ TLEI++ +F+ +Q
Sbjct: 357 RQRMRSTQVTQDTPRNFLHALMPSVQIPDSKPLRFCSDRLASLLQTLEISNVRDFVSLQK 416
Query: 400 ICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSG 459
+ FATL+GTY++GFS+I+EP+DER P++PDPVLQLSC DAS+ ++P+F RFQSV++TSG
Sbjct: 417 LAHFATLLGTYSQGFSVIMEPYDERAPNVPDPVLQLSCLDASIGMRPIFTRFQSVILTSG 476
Query: 460 TLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARN 519
T+SP+DLY R+L F P V+ S +SL R ICPMV+ RGSDQ+ +S+K+D R DP V RN
Sbjct: 477 TISPLDLYARILGFRPAVAHSLNISLHRASICPMVIARGSDQIAISSKYDSRRDPSVIRN 536
Query: 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTL 579
YG LLVE+ S+VPDG+V FF SY Y++ ++ W+ GI++++++HKLVFIET D+ E+++
Sbjct: 537 YGALLVELASVVPDGVVGFFTSYIYLESVVQMWHQMGIIQKLLEHKLVFIETPDIFESSV 596
Query: 580 ALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AL+NYR+ACD GRGA+F VARGKVAEGIDFDRHYGR V++ GVPFQYT S+
Sbjct: 597 ALENYRRACDSGRGAIFLCVARGKVAEGIDFDRHYGRCVVIIGVPFQYTESR 648
>gi|390366297|ref|XP_003731011.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 1 [Strongylocentrotus purpuratus]
Length = 672
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/632 (53%), Positives = 458/632 (72%), Gaps = 1/632 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + V+FPYD IYPEQ+ YM+ELK+ LDAKGH +LEMP+GTGKT++LL+LI +Y+
Sbjct: 1 MKVNVDGLLVHFPYDYIYPEQFMYMMELKKLLDAKGHGVLEMPSGTGKTVSLLALIVAYI 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L +Y G + + LSSRKNLC++
Sbjct: 61 QANPHELTKLIYCSRTVPEIEKAVEELRRLLDYIEEQTGEKPNFVGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD+ C TAS++R +P + C+F+E ++ A + + PG Y+L DL
Sbjct: 121 VSKERIGKVVDSKCHSLTASYIRERRKHDPAVPICDFYEEFDAAGRDSPIEPGAYSLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ G+Q GWCPYFLAR+ + AN++VYSY YLLDPK+A +SKE+ K+S V+FDEAHNID
Sbjct: 181 KEIGRQNGWCPYFLARYTITHANIIVYSYHYLLDPKIAEQVSKELSKQSAVIFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE++SV++ R+TL+ + +NL + + I R K TDA RLR EY RLV+GL
Sbjct: 241 NVCIESMSVNISRKTLDKSNQNLDSLTRHINRIKDTDAQRLREEYQRLVDGLREASRARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D LSNPALP ++L EAVPGNIR AEHF+ LRR V+YL+ RL ++V E P SF+
Sbjct: 301 TDVHLSNPALPDEVLDEAVPGNIRTAEHFIGFLRRFVEYLKTRLRVQHVISETPASFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDT-DEFLHIQTICDFATLVGTYTRGFSIIIE 419
+ + I++K LRFC ERLHSL+ TLE+TD D + + FATLV TYT+GFS+IIE
Sbjct: 361 VFSKVCIERKPLRFCAERLHSLLRTLELTDVQDNMSPLVAVSGFATLVSTYTKGFSLIIE 420
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
PFD++ P I +PVL SC DAS+A+KPVFDRFQSVVITSGTLSP+D+YP++L+F PV
Sbjct: 421 PFDDKTPTISNPVLHFSCMDASIAIKPVFDRFQSVVITSGTLSPLDMYPKILDFRPVSMA 480
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
SF M+L+R ICP+++ RG+DQ+ +S++F+ R D V RNYG L+VE+ IVPDGIV FF
Sbjct: 481 SFSMTLSRSSICPIIVARGNDQVTISSRFESREDVAVIRNYGNLIVELSGIVPDGIVAFF 540
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
SY+YM+ ++ATW + GI+ I ++KL+FIETQD ET++AL+NY KAC+ GRGA+ SV
Sbjct: 541 TSYTYMESVVATWYEQGIIDSIQKNKLLFIETQDAAETSIALNNYHKACENGRGAILLSV 600
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ARGKV+EGIDFD HYGR VIM G+P+ YT S+
Sbjct: 601 ARGKVSEGIDFDHHYGRAVIMLGIPYVYTQSR 632
>gi|347365666|gb|AEO89688.1| ercc2 [Danio rerio]
Length = 760
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/631 (54%), Positives = 458/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQYSYMLELKR LDAKGH +LEMP+GTGKTI+LLSLI +Y
Sbjct: 1 MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KL+YC+RTV E+EK + EL+ L +Y ++ G LA+ LSSRKNLC++
Sbjct: 61 KTYPLEVTKLVYCSRTVPEIEKVVEELRKLMDYYSKQTGVKNDFLALALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + VD C TAS++RA NPN C+F+E ++ +PPG+Y L DL
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQHQSNPNQPVCQFYEEFDNVGRQVPIPPGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ FG+++GWCPYFLAR+ + AN+VVYSY YLLDPK+A ++SKE+ K+SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ N+ + I R K TDA +LR EY RLVEGL
Sbjct: 241 NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +LSNP LP +IL+EAVPG+IR AEHF+ ++R ++YL+ RL +V +E F+
Sbjct: 301 TDIYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I ID+K LRFC ERL SL+ TLEI D +F I I FATLV TY++GF+IIIEP
Sbjct: 361 IFEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSPITLISHFATLVSTYSKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+++ P I +PVL SC D S+A+KPVF RFQ+V+ITSGTLSP+D+YPR+L+F PV S
Sbjct: 421 FEDKTPTIANPVLHFSCMDPSIAIKPVFGRFQTVIITSGTLSPLDIYPRILDFRPVTMAS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CP+++ RG+DQ+ +++KF+ R D V RNYG LL+EM +IVPDGIV FF
Sbjct: 481 FTMTLARTCLCPLIVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ I+A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYMYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF H+GR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSR 631
>gi|390366295|ref|XP_780825.3| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 2 [Strongylocentrotus purpuratus]
Length = 734
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/632 (53%), Positives = 458/632 (72%), Gaps = 1/632 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + V+FPYD IYPEQ+ YM+ELK+ LDAKGH +LEMP+GTGKT++LL+LI +Y+
Sbjct: 1 MKVNVDGLLVHFPYDYIYPEQFMYMMELKKLLDAKGHGVLEMPSGTGKTVSLLALIVAYI 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L +Y G + + LSSRKNLC++
Sbjct: 61 QANPHELTKLIYCSRTVPEIEKAVEELRRLLDYIEEQTGEKPNFVGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD+ C TAS++R +P + C+F+E ++ A + + PG Y+L DL
Sbjct: 121 VSKERIGKVVDSKCHSLTASYIRERRKHDPAVPICDFYEEFDAAGRDSPIEPGAYSLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ G+Q GWCPYFLAR+ + AN++VYSY YLLDPK+A +SKE+ K+S V+FDEAHNID
Sbjct: 181 KEIGRQNGWCPYFLARYTITHANIIVYSYHYLLDPKIAEQVSKELSKQSAVIFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE++SV++ R+TL+ + +NL + + I R K TDA RLR EY RLV+GL
Sbjct: 241 NVCIESMSVNISRKTLDKSNQNLDSLTRHINRIKDTDAQRLREEYQRLVDGLREASRARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D LSNPALP ++L EAVPGNIR AEHF+ LRR V+YL+ RL ++V E P SF+
Sbjct: 301 TDVHLSNPALPDEVLDEAVPGNIRTAEHFIGFLRRFVEYLKTRLRVQHVISETPASFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDT-DEFLHIQTICDFATLVGTYTRGFSIIIE 419
+ + I++K LRFC ERLHSL+ TLE+TD D + + FATLV TYT+GFS+IIE
Sbjct: 361 VFSKVCIERKPLRFCAERLHSLLRTLELTDVQDNMSPLVAVSGFATLVSTYTKGFSLIIE 420
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
PFD++ P I +PVL SC DAS+A+KPVFDRFQSVVITSGTLSP+D+YP++L+F PV
Sbjct: 421 PFDDKTPTISNPVLHFSCMDASIAIKPVFDRFQSVVITSGTLSPLDMYPKILDFRPVSMA 480
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
SF M+L+R ICP+++ RG+DQ+ +S++F+ R D V RNYG L+VE+ IVPDGIV FF
Sbjct: 481 SFSMTLSRSSICPIIVARGNDQVTISSRFESREDVAVIRNYGNLIVELSGIVPDGIVAFF 540
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
SY+YM+ ++ATW + GI+ I ++KL+FIETQD ET++AL+NY KAC+ GRGA+ SV
Sbjct: 541 TSYTYMESVVATWYEQGIIDSIQKNKLLFIETQDAAETSIALNNYHKACENGRGAILLSV 600
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ARGKV+EGIDFD HYGR VIM G+P+ YT S+
Sbjct: 601 ARGKVSEGIDFDHHYGRAVIMLGIPYVYTQSR 632
>gi|56118508|ref|NP_001008131.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Xenopus (Silurana) tropicalis]
gi|51703768|gb|AAH81339.1| ercc2 protein [Xenopus (Silurana) tropicalis]
Length = 760
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/631 (55%), Positives = 455/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQYSYMLELKR LDAKGH +LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKLNIDGLLVYFPYEYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L Y G +A+ LSSR+NLCVN
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVVEELRKLIEYTQAQTGGTLNFMALALSSRRNLCVNPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V A +D C TAS+VR+ +P ++TC FFE ++ LPPG+Y L DL
Sbjct: 121 VSALRFGKEIDGRCHSLTASFVRSQKQRDPTVQTCRFFEEFDAIGRETPLPPGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
R G+Q+GWCPY+LARH + NVVVYSY YLLDPK+A ++S+E+ K+SVVVFDEAHNID
Sbjct: 181 RTLGRQKGWCPYYLARHALGQCNVVVYSYHYLLDPKIADLVSRELSKKSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TLE N+ +N IE+ K TD +L+ EY +LVEGL
Sbjct: 241 NVCIDSMSVTITRRTLERCQTNIETLNTAIEKIKETDEKKLKEEYAQLVEGLREASVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +LSNP LP +IL+EAVPG IR A HFL LRRLV Y++ RL +V +EGP +F+
Sbjct: 301 TDVYLSNPVLPDEILQEAVPGCIRNALHFLGFLRRLVGYIKSRLRAGHVTQEGPAAFLRD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K +RFC ERL SL TLEI D + + I +FATLV TYT+GF IIIEP
Sbjct: 361 LYEKVCIERKPMRFCAERLRSLTRTLEIADITDLSPLTLITNFATLVSTYTKGFMIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F++R P I +PVL SC D+SLA+KPVF RFQSV+ITSGTLSP+D+YP++L+F PV +
Sbjct: 421 FEDRTPSISNPVLHFSCLDSSLAIKPVFQRFQSVIITSGTLSPLDIYPKILDFRPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPMV+ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMVVGRGNDQVAMSSKFETREDLAVMRNYGNLLLEMSAVVPDGIVGFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ I+A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYLYMENIVASWYEQGILENIQRNKLIFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|410910536|ref|XP_003968746.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Takifugu rubripes]
Length = 760
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/631 (54%), Positives = 458/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQYSYMLELKR LDAKGH +LEMP+GTGKTI+LLSLI +Y
Sbjct: 1 MRLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L Y + G + LA+ LSSRKNLC++
Sbjct: 61 KAFPLEVTKLIYCSRTVPEIEKVVEELRKLLEYHAKQTGQSNNFLALALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V A VD C TAS++RA +PN+ C +FE+++ LP G+Y L DL
Sbjct: 121 VSALRFGKEVDGKCHSLTASYIRAQRHSDPNVPVCRYFEDFDAVGRQVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ FG+++GWCPY+LAR+ + AN+VVYSY YLLDPK+A ++SKE+ K+SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ N+ + + I + K TDA +L+ EY RLVEGL
Sbjct: 241 NVCIDSMSVNITRRTLDRCQGNVDTLQKTIHKIKDTDAAKLKEEYRRLVEGLKEANIARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +LSNP LP +IL+EAVPG IR AEHF+ L+R ++YL+ RL ++V +E F+
Sbjct: 301 TDVYLSNPVLPDEILREAVPGTIRTAEHFVGFLKRFLEYLKSRLRVQHVVQESTPQFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I ID+K LRFC ERL SL+ TLEI D +F + I +FATLV TY++GF+IIIEP
Sbjct: 361 IFEKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAVTLIANFATLVSTYSQGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F++R P I +PVL SC D S+A+KPVF RFQSVVITSGTLSP+D+YP++L+F PV S
Sbjct: 421 FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVVITSGTLSPLDIYPKILDFRPVTMAS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CP+++ RG+DQ+ +S+KF+ R D V RNYG LL+EM +IVPDGIV FF
Sbjct: 481 FTMTLARTCLCPLIIGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ I+A+W + GIL+ I ++KL+FIET D ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYVYMENIVASWYEQGILENIQKNKLIFIETPDAAETSMALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF H+GR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSR 631
>gi|213511929|ref|NP_001133411.1| TFIIH basal transcription factor complex helicase subunit [Salmo
salar]
gi|209153902|gb|ACI33183.1| TFIIH basal transcription factor complex helicase subunit [Salmo
salar]
Length = 760
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/631 (54%), Positives = 460/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +E + VYFPYD IYPEQYSYMLELKR LDAKGH +LEMP+GTGKTI+LLSLI +Y
Sbjct: 1 MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
P KLIYC+RTV E+EK + EL+ L + ++ G ILA+ LSSRKNLCV+
Sbjct: 61 REYPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYSKETGEKNNILALALSSRKNLCVHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + VD C TAS++RA NP++ +C F+E ++ LP GVY L DL
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQRQSNPSLPSCRFYEEFDAMGKQVPLPAGVYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ FG+++GWCPY+LAR+ + AN++VYSY YLLDPK+A ++SKE+ K+SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIIVYSYHYLLDPKIADLVSKELSKKSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ + N+ + I + K TDA +L+ EY RLVEGL
Sbjct: 241 NVCIDSMSVNITRRTLDRSQANVETLQNTILKIKETDAAKLKEEYRRLVEGLKEANVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++SNP LP +IL+EAVPG+IR AEHF+ ++R ++YL+ RL +V +E F+
Sbjct: 301 TDIYMSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I ID+K LRFC ERL SL+ TLEI D +F I I +FATLV TY++GF+IIIEP
Sbjct: 361 IFEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSAITLISNFATLVSTYSKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F++R P I +PVL SC D S+A+KPVF+RFQSV+ITSGTLSP+D+YPR+L+F PV S
Sbjct: 421 FEDRTPTIANPVLHFSCMDPSIAIKPVFERFQSVIITSGTLSPLDIYPRILDFRPVTVAS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CP+V+ RG+DQ+ +++KF+ R D V RNYG LL+EM +IVPDGIV FF
Sbjct: 481 FTMTLARTCLCPLVVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY+YM+ I+A+W + GIL+ + ++KL+FIET D ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYTYMENIVASWYEQGILENVQRNKLIFIETPDAAETSMALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF H+GR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSR 631
>gi|260830571|ref|XP_002610234.1| hypothetical protein BRAFLDRAFT_286830 [Branchiostoma floridae]
gi|229295598|gb|EEN66244.1| hypothetical protein BRAFLDRAFT_286830 [Branchiostoma floridae]
Length = 763
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/631 (52%), Positives = 465/631 (73%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + V FPYD IYPEQYSYM+ELKR+LDAKGHC+LEMP+GTGKT++LLSLI +Y+
Sbjct: 1 MKINIDGLLVLFPYDYIYPEQYSYMVELKRSLDAKGHCVLEMPSGTGKTVSLLSLIVAYL 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P++ KLIYC+RTV E+EK L EL+ L Y + G ++ + LSSRKNLC++
Sbjct: 61 KTSPKDVCKLIYCSRTVPEIEKVLEELRKLMEYYEKETGEPPNLIGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + VD C + TAS+VR+ +P++ C+F+E ++ +LPPG+Y L D+
Sbjct: 121 VSTLQFGKEVDGRCHQMTASFVRSRHERDPDVPVCDFYERFDALGRETLLPPGIYNLDDM 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ G+++G+CPYF+AR+ + +AN+VVYSY YLLDPK+A ++SKE+ K SVVVFDEAHNID
Sbjct: 181 KDVGREKGYCPYFMARYAITYANIVVYSYHYLLDPKIADLVSKELAKNSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+ L+ N+ + + ++R K TD RLR EY+RLVEGL
Sbjct: 241 NVCIDSMSVTINRRMLDRCQTNVEALTRTVQRLKDTDQQRLRQEYSRLVEGLREANVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D LSNP LP ++L+EAVPGNIR AEHF+ ++R ++YL+ RL ++V +E P SF+
Sbjct: 301 TDVVLSNPVLPDEVLQEAVPGNIRTAEHFVGFMKRFLEYLKSRLRIQHVVQETPASFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ +D+K LRFC ERL+SL+ TLEI D +F + + +FATLV TY +GF++I+EP
Sbjct: 361 LKEKVCLDRKPLRFCSERLNSLIRTLEIADLTDFSPLILLANFATLVSTYMKGFTLIMEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DAS+A+KPVFDRFQSVVITSGTLSP+D+YP++L+F PV S
Sbjct: 421 FDDRTPTISNPILNFSCMDASIAIKPVFDRFQSVVITSGTLSPLDMYPKILDFRPVNMAS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R CICPM++ RG+DQ+ +++KF+ R D + RNYG LLV+M ++VPDGIV FF
Sbjct: 481 FTMTLARPCICPMIVGRGNDQVTMTSKFESREDVAIIRNYGNLLVDMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYM+ +A W + GI++ + ++KL+FIETQ ET++AL Y++AC+ GRGA+ SVA
Sbjct: 541 SYSYMESTVAAWYEQGIIENVQRNKLLFIETQSAAETSVALQKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF+ H GR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGIDFEHHLGRAVVMFGIPYVYTQSR 631
>gi|604371|gb|AAA85822.1| ERCC2/XPD [Xiphophorus maculatus]
Length = 760
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/631 (54%), Positives = 456/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +E + VYFPYD IYPEQYSYMLELKR LDAKGH +LEMP+GTGKTI+LLSLI +Y
Sbjct: 1 MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P + KLIYC+RTV E+EK + EL+ L + + G LA+ LSSRKNLC++
Sbjct: 61 RAFPLDVTKLIYCSRTVPEIEKVVEELRKLMEFYAKETGEVNNFLALSLSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + VD C TAS++RA NPN C F+E ++ LP G+Y L DL
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQRHSNPNQPVCRFYEEFDAVGRQVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ FG+++GWCPY+LAR+ + AN+VVYSY YLLDPK+A ++SKE+ K+SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+T++ N+ + I + K TDA +LR EY RLVEGL
Sbjct: 241 NVCIDSMSVNITRRTVDRCQNNVDTLQNTIHKIKETDAAKLREEYRRLVEGLKEANVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +L+NP LP ++L+EAVPG+IR AEHF+ LRR ++YL+ RL ++V +E F+
Sbjct: 301 TDIYLANPVLPDEVLQEAVPGSIRTAEHFVGFLRRFLEYLKARLRVQHVVQESAPQFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I ID+K LRFC ERL L+ TLEI D +F + I +FATLV TY++GF+IIIEP
Sbjct: 361 IFDKVCIDRKPLRFCAERLQCLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F++R P I +PVL SC D S+A+KPVF RFQSV+ITSGTLSP+D+YPR+L+F PV S
Sbjct: 421 FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVIITSGTLSPLDIYPRILDFRPVTMAS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CP+++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ I+A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYVYMENIVASWYEQGILENIQKNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF H+GR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSR 631
>gi|410982712|ref|XP_003997692.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Felis catus]
Length = 760
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/632 (54%), Positives = 464/632 (73%), Gaps = 2/632 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNS 119
+ P KLIYC+RTV E+EK + EL KLLH Y+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLHFYEKQE-GEKLPFLGLALSSRKNLCIHP 119
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
V+ VD C TAS+VRA ++P++ C F+E ++ LP G+Y L D
Sbjct: 120 EVMPLRFGKDVDGKCHSLTASYVRAQYQQDPSLPHCRFYEEFDVHGRQVPLPAGIYNLDD 179
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNI
Sbjct: 180 LKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKELARKAVVVFDEAHNI 239
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 240 DNVCIDSMSVNITRRTLDRCQGNLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAAR 299
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 300 ETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLS 359
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIE
Sbjct: 360 GLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIE 419
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
PFD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV
Sbjct: 420 PFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMA 479
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
+F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 480 TFTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFF 539
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SV
Sbjct: 540 TSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSV 599
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ARGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 600 ARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|157132567|ref|XP_001656074.1| DNA repair helicase rad3/xp-d [Aedes aegypti]
gi|108884369|gb|EAT48594.1| AAEL000404-PA [Aedes aegypti]
Length = 760
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/631 (53%), Positives = 456/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY+YMLELKR DAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 1 MRISVDGLLVYFPYEYIYPEQYAYMLELKRTFDAKGHCLLEMPSGTGKTTTLLSLIVAYI 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK +AELK L NY + G I + LSSRKN+C++S
Sbjct: 61 MENPHIVRKLIYCSRTVPEIEKVIAELKHLMNYYEKQTGVMPNITGLVLSSRKNMCIHSE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + VDA C TAS+VR A + ++ C+++E ++ + LPPGVY++ DL
Sbjct: 121 VSKERDGKIVDAKCYGMTASYVRERATTDDSVAVCQYYEGFQAEGKESTLPPGVYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ FG+++ WCPYFL+R + A+VVVYSY YLLDPK+A ++SKE+ KESVVV DEAHNID
Sbjct: 181 KDFGRERNWCPYFLSRFAINQAHVVVYSYHYLLDPKIAEVVSKELAKESVVVCDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVC++++SV + R+ +E +T + + + + K D RL EY RLV+GL
Sbjct: 241 NVCVDSMSVKINRRLIEKSTTGVHTLEKYVAEMKEDDRKRLNDEYLRLVQGLKDASFARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP++ILKE VPGNIR A+HFL L+R ++Y++ RL ++V +E P F+
Sbjct: 301 TDMVLANPVLPTEILKEVVPGNIRNADHFLSFLKRFIEYIKSRLRVQHVVQESPAGFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I I++K LRFC ERL SL+ TLEITD EF + I FATLV TYT+GF+IIIEP
Sbjct: 361 IQQKVCIERKPLRFCAERLSSLLRTLEITDLTEFGPLTVITSFATLVSTYTKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P+L LSC D+S+A+KP+F RFQSVVITSGTLSP+D+YP++L+F PVV S
Sbjct: 421 FDDKTPTVSNPILHLSCMDSSIAMKPIFQRFQSVVITSGTLSPMDMYPKILDFEPVVMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM+++RG+DQ+ +S+KF+ R D V RNYG+LLVE VPDGIVCFF
Sbjct: 481 FTMTLARPCLLPMIVSRGNDQVAISSKFETREDTAVTRNYGQLLVETAKTVPDGIVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KAC+CGRGAV +VA
Sbjct: 541 SYLYLESVVASWYDQGIIDTLLRYKLLFIETQDNAETSYALMNYVKACECGRGAVLLAVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RG+V+EG+DFD H GR V+MFG+P+ YT S+
Sbjct: 601 RGRVSEGVDFDHHLGRAVLMFGIPYVYTQSR 631
>gi|345785629|ref|XP_541562.3| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit [Canis lupus familiaris]
Length = 760
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/631 (54%), Positives = 461/631 (73%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V+ VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VMPLRFGKDVDGKCHSLTASYVRAQYQQDSSLPHCRFYEEFDVHGRQVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNITRRTLDRCQGNLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|345480734|ref|XP_001605333.2| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Nasonia vitripennis]
Length = 759
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/631 (53%), Positives = 459/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQY+YML+LKR LDAKGHCLLEMP+GTGKTI LLSLI +Y+
Sbjct: 1 MKISVDGLLVYFPYDYIYPEQYAYMLDLKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L P KLIYC+RTV E+EK + ELK L +Y + KI+ + LSSRKN+C++
Sbjct: 61 LEHPHQVTKLIYCSRTVPEIEKVIEELKKLIDYYEKETKVLPKIIGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD+ C TAS+VR + + C F+E ++ ++PPG+Y++ D+
Sbjct: 121 VSKEREGKIVDSQCHALTASYVRERHNYDESTPVCGFYETFDIEGREMMMPPGIYSIDDM 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +GK + WCPYFLAR+ + A ++VYSY YLLDPK+A +SKE+ K SVVVFDEAHNID
Sbjct: 181 KEYGKDRNWCPYFLARYTIMHAQIIVYSYHYLLDPKIAEAVSKELAKSSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+T+E + NLS + + + K DA +L+ EYN+LVEGL
Sbjct: 241 NVCIDSMSVKLNRRTMEKSCANLSLLEKTVAEMKEDDANKLKDEYNKLVEGLKDAQVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP+++L++ VPGNIR+AEHF+ L+R V+YL+ RL ++V +E PV+F+
Sbjct: 301 TDVVLANPVLPNEVLEDVVPGNIRKAEHFVGFLKRFVEYLKMRLRIQHVVQETPVTFLRD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ A I++K LRFC ERL SL+ T+EITD +F + + ATLV TYT+GF+IIIEP
Sbjct: 361 VQAKICIERKPLRFCAERLASLLRTMEITDLTDFSPLILVTHLATLVATYTKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P+L SC D+S+A+KP+FDRFQSVVITSGTLSP+D+YP++LNFHPV+ S
Sbjct: 421 FDDKAPTVHNPILYFSCLDSSIAMKPIFDRFQSVVITSGTLSPLDMYPKILNFHPVIMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++++G+DQ+ +S+K++ R D V RNYG+LLVE + VPDGIVCFF
Sbjct: 481 FTMTLARPCLLPMIVSKGNDQVAISSKYETREDVAVIRNYGQLLVEFAANVPDGIVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ ++A W D GIL +I ++KL+FIETQD ET+LAL Y KACD GRGAV SVA
Sbjct: 541 SYLYMESVVAAWYDQGILDQIQRYKLIFIETQDAAETSLALYYYNKACDNGRGAVLLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD H GR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSR 631
>gi|383850774|ref|XP_003700951.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Megachile rotundata]
Length = 759
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/631 (52%), Positives = 455/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MI ++ + VYFPYD IYPEQY+YMLELKRALDAKGHCLLEMP+GTGKTI LLSLI +Y+
Sbjct: 1 MIISVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHCLLEMPSGTGKTITLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L P + KLIYC+RTV E+EK + ELK L +Y + G KI+ + LSSRKN+C++
Sbjct: 61 LENPLDITKLIYCSRTVPEIEKVIEELKKLMDYYEKETGSKPKIVGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VR + + C F+E ++ ++PPG+Y++ DL
Sbjct: 121 VSREREGKIVDGRCHALTASYVRERHNYDESTPICNFYEGFDMEGKEQLMPPGIYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ + WCPYFLAR + A +VVYSY YLLDPK+A +SKE+ K SVVVFDEAHNID
Sbjct: 181 KDYGRDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAESVSKELSKSSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+ LE ++ N+ + + + + D +L+ EY+RLVEGL
Sbjct: 241 NVCIDSMSVKINRRILEKSSANIQLLEKTVAEMREDDVNKLKEEYDRLVEGLKDARVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP ++L+E +PGNIR AEHF+ L+R V+YL+ RL ++V +E P +F+
Sbjct: 301 TDIILANPVLPDEVLQEVIPGNIRNAEHFICFLKRFVEYLKTRLRVQHVVQESPAAFLRD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ A I++K LRFC ERL S + T+EITD +F I + ATLV TYT+GF+II+EP
Sbjct: 361 VQAKVSIERKLLRFCAERLGSFLRTMEITDLTDFSPIILVTHLATLVSTYTKGFTIIVEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P+L SC D+S+A+KP+FDRFQSVVITSGTLSP+D+YP++LNFHPV+ S
Sbjct: 421 FDDKSPTVLNPILHFSCLDSSIAMKPIFDRFQSVVITSGTLSPLDMYPKILNFHPVIMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++ +G+DQ+ +S+K++ R D V RNYG+LLVE + VPDG+VCFF
Sbjct: 481 FTMTLARPCLLPMIVAKGNDQVTISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ ++A W D G++ ++ +HKL+FIETQD ET+LAL NY KAC+ GRGAV SVA
Sbjct: 541 SYLYMESVVAAWYDQGVVDQLQRHKLLFIETQDSAETSLALINYIKACENGRGAVLLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD H GR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSR 631
>gi|432891078|ref|XP_004075537.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Oryzias latipes]
Length = 665
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/635 (55%), Positives = 456/635 (71%), Gaps = 7/635 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +E + VYFPYD IYPEQYSYMLELKR LDAKGH +LEMP+GTGKTI+LLSLI +Y
Sbjct: 1 MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P + KLIYC+RTV E+EK + EL+ L + + G LA+ LSSRKNLC++
Sbjct: 61 KAFPLDVTKLIYCSRTVPEIEKVVEELRKLMEFYAKETGEVNNFLALALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + VD C TAS++RA NP+ C F+E ++ LP G+Y L DL
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQRHSNPDQPVCRFYEEFDAVGRQVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ FG+++GWCPY+LAR+ + AN+VVYSY YLLDPK+A ++SKE+ K+SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIER----FKATDAGRLRAEYNRLVEGLALRG 296
NVCI+++SV++ R+TL+ R I E++R K TDA +LR EY RLVEGL
Sbjct: 241 NVCIDSMSVNITRRTLD---RRFCLIQTELKRKILKIKDTDAAKLREEYRRLVEGLKEAN 297
Query: 297 NLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVS 356
D +L+NP LP +IL+EAVPG+IR AEHFL LRR ++YL+ RL +V +E
Sbjct: 298 VARETDVYLANPVLPDEILQEAVPGSIRTAEHFLGFLRRFLEYLKSRLRVHHVVQESAPQ 357
Query: 357 FVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSI 416
F+ I ID+K LRFC ERL SL+ TLEI D +F + I +FATLV TY+ GF+I
Sbjct: 358 FLKDIFEKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSLGFTI 417
Query: 417 IIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPV 476
IIEPFD+R P I +PVL SC D S+A+KPVF RFQSVVITSGTLSP+D+YP++L+F PV
Sbjct: 418 IIEPFDDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVVITSGTLSPLDIYPKILDFRPV 477
Query: 477 VSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIV 536
SF M+L R C+CP+++ RG+DQ+ +S+KF+ R D V RNYG LL+EM +IVPDGIV
Sbjct: 478 TMASFTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAIVPDGIV 537
Query: 537 CFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVF 596
FF SY YM+ I+A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+
Sbjct: 538 AFFTSYVYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAIL 597
Query: 597 FSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDF H+GR VIMFGVP+ YT S+
Sbjct: 598 LSVARGKVSEGIDFVHHFGRAVIMFGVPYVYTQSR 632
>gi|296234099|ref|XP_002762284.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 1 [Callithrix jacchus]
Length = 760
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/630 (54%), Positives = 458/630 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA + ++ C F+E ++ LPPG+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDTHGREVPLPPGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G+ QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGRHQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEITD +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
RGKV+EGIDF HYGR VIMFGVP+ YT S
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQS 630
>gi|157168345|ref|NP_001096787.1| TFIIH basal transcription factor complex helicase XPD subunit [Bos
taurus]
gi|182645388|sp|A6QLJ0.1|ERCC2_BOVIN RecName: Full=TFIIH basal transcription factor complex helicase XPD
subunit; AltName: Full=CXPD; AltName: Full=DNA excision
repair protein ERCC-2; AltName: Full=DNA repair protein
complementing XP-D cells; AltName: Full=Xeroderma
pigmentosum group D-complementing protein
gi|151556394|gb|AAI47983.1| ERCC2 protein [Bos taurus]
gi|296477395|tpg|DAA19510.1| TPA: TFIIH basal transcription factor complex helicase subunit [Bos
taurus]
Length = 760
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/631 (54%), Positives = 460/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++LKEAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI+D +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLYTLEISDLTDFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|348557833|ref|XP_003464723.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Cavia porcellus]
Length = 760
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/631 (54%), Positives = 461/631 (73%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLSFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDTSMPHCRFYEEFDAHGRQVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQANLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL+++++ RL ++V +E P +F++S
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEFVKWRLRVQHVVQESPPAFLSS 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +PVL SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|355703655|gb|EHH30146.1| hypothetical protein EGK_10751 [Macaca mulatta]
Length = 760
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/631 (54%), Positives = 458/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL + V +E P SF++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQPVVQESPASFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEITD +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|334328785|ref|XP_003341121.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit-like [Monodelphis
domestica]
Length = 807
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/629 (54%), Positives = 458/629 (72%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
++ + V+FPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKTI+LL+LI +Y
Sbjct: 50 LNVDGLLVHFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTISLLALIVAYQRV 109
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
P KLIYC+RTV E+EK + EL+ L N + G L + LSSRKNLC++ V
Sbjct: 110 HPLEVTKLIYCSRTVPEIEKVIEELRKLMNSFEKQEGEKVPFLGLALSSRKNLCIHPEVT 169
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
VD C TAS+VRA ++ ++ C F+E ++ +P G+Y L DL+A
Sbjct: 170 PLRFGKDVDGKCHSLTASYVRAQRQQDSSVPHCRFYEEFDAQGRQMPIPWGIYNLDDLKA 229
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
FG+Q+GWCPYFLAR+ + ANV+VYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNV
Sbjct: 230 FGRQKGWCPYFLARYSILHANVIVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNV 289
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
CI+++SV++ R+TL+ NL + + + + K TD RLR EY RLVEGL D
Sbjct: 290 CIDSMSVNLTRRTLDRCQNNLETLQRTVHKIKETDEKRLREEYRRLVEGLREASVARETD 349
Query: 303 AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASIT 362
A L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL T++V +E P +F+ +
Sbjct: 350 AHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRTQHVVQESPPAFLGGLA 409
Query: 363 AHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFD 422
I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY+RGF+IIIEPFD
Sbjct: 410 HRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLSNFATLVSTYSRGFTIIIEPFD 469
Query: 423 ERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFK 482
ER P I +PVL SC DASLA+KPVF+RFQSV+ITSGTLSP+++YP++L+FHPV +F
Sbjct: 470 ERTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLEIYPKILDFHPVTMATFT 529
Query: 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSY 542
M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY
Sbjct: 530 MTLARVCLCPMIVGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSY 589
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARG 602
YM+ +A W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARG
Sbjct: 590 QYMESTVAAWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARG 649
Query: 603 KVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
KV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 650 KVSEGIDFVHHYGRAVIMFGVPYVYTQSR 678
>gi|307686333|dbj|BAJ21097.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 [synthetic construct]
Length = 760
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/631 (54%), Positives = 460/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP+++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPNEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEITD +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|119936449|gb|ABM06129.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 protein [Bos taurus]
Length = 773
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/629 (54%), Positives = 459/629 (72%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y +
Sbjct: 16 LNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRA 75
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++ V
Sbjct: 76 YPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVT 135
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL+A
Sbjct: 136 PLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDLKA 195
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNV
Sbjct: 196 VGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNV 255
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
CI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL D
Sbjct: 256 CIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARETD 315
Query: 303 AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASIT 362
A L+NP LP ++LKEAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++ +
Sbjct: 316 AHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLA 375
Query: 363 AHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFD 422
I +K LRFC ERL SL+ TLEI+D +F + + +FATLV TY +GF+IIIEPFD
Sbjct: 376 QRVCIQRKPLRFCAERLRSLLYTLEISDLTDFSPLTLLANFATLVSTYAKGFTIIIEPFD 435
Query: 423 ERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFK 482
+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F
Sbjct: 436 DRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFT 495
Query: 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSY 542
M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY
Sbjct: 496 MTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSY 555
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARG 602
YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARG
Sbjct: 556 QYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARG 615
Query: 603 KVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
KV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 616 KVSEGIDFVHHYGRAVIMFGVPYVYTQSR 644
>gi|402905923|ref|XP_003915757.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Papio anubis]
Length = 760
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/631 (54%), Positives = 459/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEITD +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|346986337|ref|NP_001231320.1| TFIIH basal transcription factor complex helicase XPD subunit
[Cricetulus griseus]
gi|2495145|sp|Q60452.1|ERCC2_CRIGR RecName: Full=TFIIH basal transcription factor complex helicase XPD
subunit; AltName: Full=CXPD; AltName: Full=DNA excision
repair protein ERCC-2; AltName: Full=DNA repair protein
complementing XP-D cells; AltName: Full=Xeroderma
pigmentosum group D-complementing protein
gi|604908|gb|AAC13749.1| nucleotide excision repair protein [Cricetulus griseus]
Length = 760
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/631 (54%), Positives = 460/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++
Sbjct: 61 RAFPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDAHGRQVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|307182232|gb|EFN69563.1| TFIIH basal transcription factor complex helicase subunit
[Camponotus floridanus]
Length = 759
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/631 (52%), Positives = 453/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQY+YMLELKR LDAKGHCLLEMP+GTGKTI LLSLI +Y+
Sbjct: 1 MKISVDGLIVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L P + KLIYC+RTV E+EK + ELK L +Y + KI+ + LSSRKN+C++
Sbjct: 61 LEHPLDVTKLIYCSRTVPEIEKVIEELKKLIDYYEKETKSKPKIVGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VR + + C F+E ++ ++PPG+Y++ DL
Sbjct: 121 VSREREGKIVDGRCHSLTASYVRERHNYDESTPICSFYEGFDMEGREQIIPPGIYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +GK + WCPYFLAR + A +VVYSY YLLDPK+A +SKE+ K SVVVFDEAHNID
Sbjct: 181 KDYGKDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSKNSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+ +E ++ N+ + + + + D +L+ EYNRLVEGL
Sbjct: 241 NVCIDSMSVKINRKLMEKSSTNIQLLEKTVAEMREVDVNKLKEEYNRLVEGLKDAQLQRE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP+++L+E VPGNIR AEHF+ L+R V+YL+ RL ++V +E P +F+
Sbjct: 301 TDVILANPILPNEVLEEVVPGNIRNAEHFVSFLKRFVEYLKTRLRVQHVVQESPAAFLRD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I A I++K LRFC +RL SL+ T+EITD +F I + ATLV TYT GF+II+EP
Sbjct: 361 IQAKVAIERKPLRFCAQRLASLLRTMEITDLTDFSPIILVTHLATLVSTYTHGFTIIVEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P+L SC D+S+AVKP+FDRFQSV+ITSGTLSP+D+YP++LNFHPV+ S
Sbjct: 421 FDDKTPTVLNPILHFSCLDSSIAVKPIFDRFQSVIITSGTLSPLDMYPKILNFHPVIMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++ +G+DQ+ +S+K++ R D V RNYG+LLVE + VPDG+VCFF
Sbjct: 481 FTMTLARPCLLPMIVGKGNDQVTISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ ++A W D G++ ++ +HKL+FIETQD ET+LAL NY KAC+ GRGAV SVA
Sbjct: 541 SYLYMESVVAAWYDQGVVDQLQRHKLLFIETQDSAETSLALINYIKACENGRGAVLLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD H GR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSR 631
>gi|350538411|ref|NP_001233519.1| TFIIH basal transcription factor complex helicase subunit [Pan
troglodytes]
gi|397493359|ref|XP_003817575.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 1 [Pan paniscus]
gi|343958692|dbj|BAK63201.1| TFIIH basal transcription factor complex helicase subunit [Pan
troglodytes]
Length = 760
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/631 (54%), Positives = 459/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDSSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEITD +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|328770825|gb|EGF80866.1| hypothetical protein BATDEDRAFT_29908 [Batrachochytrium
dendrobatidis JAM81]
Length = 758
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/632 (53%), Positives = 467/632 (73%), Gaps = 8/632 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F L+D+ + FPY+ IYPEQY+YM ++KRALDA+GHCLLEMP+GTGKTI+LLSLI +Y
Sbjct: 1 MKFTLDDLPIIFPYEYIYPEQYAYMKDMKRALDAQGHCLLEMPSGTGKTISLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE KLIYC+RTV E+EK LAEL L Y+ G L +GL+SR+NLC++
Sbjct: 61 QFYPEKR-KLIYCSRTVPEIEKALAELSRLMKYREEQ-GLVENFLGLGLTSRRNLCIHP- 117
Query: 121 VLAAENRDSV-DAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
+++ E R +V DA CR T+ WVR A P+IE CEF+E E A + A +P GVYTL+D
Sbjct: 118 IVSKEKRGTVTDAKCRNLTSPWVRENAKHEPDIELCEFYETLEAADTTATVPSGVYTLED 177
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L+ + ++ +CPYFLAR ++ FANV++YSY YLLDPKVA ++SKE+ ++ +VVFDEAHNI
Sbjct: 178 LKEYSTKKKYCPYFLARRLLPFANVIIYSYHYLLDPKVADMVSKELSRDCIVVFDEAHNI 237
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVC E+LS+ + + L+ + R+++ +++ IE K +++ +L+ EY RL + R
Sbjct: 238 DNVCTESLSIDISKPMLDASARSVAELSRRIESMKVSNSEKLQNEYTRLRQAQESRD--- 294
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
A ++NP LP DIL+E+VPGNIRRAEHF+ LRR ++YL+ R+ +V E P+SF+
Sbjct: 295 -AGEIMTNPVLPDDILQESVPGNIRRAEHFVAFLRRFIEYLKTRMRVMHVVAESPLSFLQ 353
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
+ ID+K LRF ERL SL+ TLEI D ++ +Q + FATLV TY +GF +I+E
Sbjct: 354 HVKEITFIDKKPLRFSAERLGSLIKTLEINDLTDYSALQKVASFATLVATYQKGFVLILE 413
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
PF+ M IP+PVL +C DA+LA+KPVFDRF SV+ITSGTLSP++LYP LL F PVV+
Sbjct: 414 PFENDMDTIPNPVLHFTCLDATLAIKPVFDRFSSVIITSGTLSPMELYPMLLGFEPVVTE 473
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
S++M+LTR C P+++TRGSDQ+ VS+KF++R+D V RNYG +L+E I PDG+VCFF
Sbjct: 474 SYQMTLTRTCFLPLIVTRGSDQVTVSSKFEVRNDVAVVRNYGNILLEFAKITPDGLVCFF 533
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
SY YM+ I+A WND G+L+E+++ KL+FIET D ET++AL+NYR+ACD GRGAV SV
Sbjct: 534 PSYLYMESIVAAWNDLGMLRELLKLKLIFIETPDATETSIALENYRQACDNGRGAVLLSV 593
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ARGKV+EG+DFD +YGR VI+FG+P+QYT S+
Sbjct: 594 ARGKVSEGVDFDHNYGRAVILFGIPYQYTESR 625
>gi|426389184|ref|XP_004061004.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Gorilla gorilla gorilla]
gi|83405523|gb|AAI10524.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Homo sapiens]
gi|119577745|gb|EAW57341.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 (xeroderma pigmentosum D),
isoform CRA_a [Homo sapiens]
gi|383416479|gb|AFH31453.1| TFIIH basal transcription factor complex helicase XPD subunit
isoform 1 [Macaca mulatta]
Length = 760
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/631 (54%), Positives = 459/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEITD +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|296645|emb|CAA36463.1| ercc2 gene product [Homo sapiens]
Length = 730
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/631 (54%), Positives = 459/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEITD +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|15834617|ref|NP_000391.1| TFIIH basal transcription factor complex helicase XPD subunit
isoform 1 [Homo sapiens]
gi|119540|sp|P18074.1|ERCC2_HUMAN RecName: Full=TFIIH basal transcription factor complex helicase XPD
subunit; AltName: Full=Basic transcription factor 2 80
kDa subunit; Short=BTF2 p80; AltName: Full=CXPD;
AltName: Full=DNA excision repair protein ERCC-2;
AltName: Full=DNA repair protein complementing XP-D
cells; AltName: Full=TFIIH basal transcription factor
complex 80 kDa subunit; Short=TFIIH 80 kDa subunit;
Short=TFIIH p80; AltName: Full=Xeroderma pigmentosum
group D-complementing protein
gi|17939382|gb|AAL48323.1| ERCC2 [Homo sapiens]
gi|82568960|gb|AAI08256.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Homo sapiens]
Length = 760
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/631 (54%), Positives = 459/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEITD +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|2114484|gb|AAB58296.1| DNA helicase [Mus musculus]
Length = 760
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/631 (54%), Positives = 460/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +PVL SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGAV SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAVLLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|289802977|ref|NP_001166280.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Rattus norvegicus]
gi|149056774|gb|EDM08205.1| rCG54110 [Rattus norvegicus]
Length = 760
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/631 (54%), Positives = 460/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDTHGRQVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTITNPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|403299021|ref|XP_003940291.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 1 [Saimiri boliviensis boliviensis]
Length = 782
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/629 (54%), Positives = 457/629 (72%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y +
Sbjct: 25 LNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRA 84
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++ V
Sbjct: 85 YPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVT 144
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
VD C TAS+VRA + ++ C F+E ++ LPPG+Y L DL+A
Sbjct: 145 PLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDTHGREVPLPPGIYNLDDLKA 204
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G+ GWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNV
Sbjct: 205 LGRHHGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNV 264
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
CI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL D
Sbjct: 265 CIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETD 324
Query: 303 AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASIT 362
A L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++ +
Sbjct: 325 AHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLA 384
Query: 363 AHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFD 422
I +K LRFC ERL SL+ TLEITD +F + + +FATLV TY +GF+IIIEPFD
Sbjct: 385 QRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFD 444
Query: 423 ERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFK 482
+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F
Sbjct: 445 DRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFT 504
Query: 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSY 542
M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY
Sbjct: 505 MTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSY 564
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARG 602
YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARG
Sbjct: 565 QYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARG 624
Query: 603 KVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
KV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 625 KVSEGIDFVHHYGRAVIMFGVPYVYTQSR 653
>gi|380799421|gb|AFE71586.1| TFIIH basal transcription factor complex helicase XPD subunit
isoform 1, partial [Macaca mulatta]
Length = 771
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/629 (54%), Positives = 458/629 (72%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y +
Sbjct: 14 LNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRA 73
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++ V
Sbjct: 74 YPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVT 133
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL+A
Sbjct: 134 PLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKA 193
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNV
Sbjct: 194 LGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNV 253
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
CI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL D
Sbjct: 254 CIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETD 313
Query: 303 AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASIT 362
A L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++ +
Sbjct: 314 AHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLA 373
Query: 363 AHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFD 422
I +K LRFC ERL SL+ TLEITD +F + + +FATLV TY +GF+IIIEPFD
Sbjct: 374 QRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFD 433
Query: 423 ERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFK 482
+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F
Sbjct: 434 DRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFT 493
Query: 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSY 542
M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY
Sbjct: 494 MTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSY 553
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARG 602
YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARG
Sbjct: 554 QYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARG 613
Query: 603 KVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
KV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 614 KVSEGIDFVHHYGRAVIMFGVPYVYTQSR 642
>gi|31542614|ref|NP_031975.2| TFIIH basal transcription factor complex helicase XPD subunit [Mus
musculus]
gi|341940664|sp|O08811.2|ERCC2_MOUSE RecName: Full=TFIIH basal transcription factor complex helicase XPD
subunit; AltName: Full=CXPD; AltName: Full=DNA excision
repair protein ERCC-2; AltName: Full=DNA repair protein
complementing XP-D cells; AltName: Full=Xeroderma
pigmentosum group D-complementing protein
gi|26349935|dbj|BAC38607.1| unnamed protein product [Mus musculus]
gi|148691193|gb|EDL23140.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Mus musculus]
Length = 760
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/631 (54%), Positives = 460/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +PVL SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|321463407|gb|EFX74423.1| hypothetical protein DAPPUDRAFT_324413 [Daphnia pulex]
Length = 760
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/631 (54%), Positives = 455/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELK ALDAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKHALDAKGHCLLEMPSGTGKTTTLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P + KL+YC+RTV E+EK + EL+ L NY + +G IL + LSSRKNLC++
Sbjct: 61 KAHPLDLTKLVYCSRTVPEIEKVMEELRKLMNYYEKEMGMEQNILGLALSSRKNLCIHPS 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA A + + C F+E ++ LPPGVY L DL
Sbjct: 121 VSKEREGKVVDGRCYGLTASFVRARHAGDDAVPVCNFYEGFDAHGKEFPLPPGVYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ +GWCPYFLAR+ + AN+VVYSY YLLDPK+A ++SKE+ K SVVVFDEAHNID
Sbjct: 181 KEYGQAKGWCPYFLARYTITHANIVVYSYHYLLDPKIAEVVSKEISKTSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + ++ L+ + ++ + I K D RL EY RLVEGL
Sbjct: 241 NVCIDSMSVKITKRLLDKCSNSIQILETTISNMKENDNRRLEKEYQRLVEGLRDANIARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L NP LPS+IL+EAVPG IR AEHF+ L+R+V+Y++ RL ++V +E P F+
Sbjct: 301 TDMALVNPVLPSEILEEAVPGTIRTAEHFVAFLKRVVEYIKTRLRVQHVVQESPAGFLRD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I ID+K LRF ERL SL+ TLEI+D +F + T+ FATLV TYT+GF+IIIEP
Sbjct: 361 IHIKVCIDRKPLRFTAERLSSLIRTLEISDLTDFSPLVTVSHFATLVSTYTKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F++R P + +P+L SC D+S+A+KPVF+RFQ+VVITSGTLSP+D+YP++L+FHPV+ S
Sbjct: 421 FEDRAPTVSNPILYFSCLDSSIAIKPVFNRFQTVVITSGTLSPLDMYPKILDFHPVIMTS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R CI PM++++G+DQ+ +S++++ R D V RNYG LLVE+ + VPDGIVCFF
Sbjct: 481 FTMTLARPCILPMIVSKGNDQVAMSSRYETREDTAVIRNYGNLLVEVAAAVPDGIVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ I+++W D GI+ ++ +HKL+FIETQD ET+LAL NY KACD GRGAV SVA
Sbjct: 541 SYLYLETIVSSWYDQGIIDQLQRHKLLFIETQDAAETSLALINYIKACDNGRGAVLLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD H GR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGIDFDHHLGRAVLMFGIPYVYTQSR 631
>gi|340710930|ref|XP_003394036.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit-like [Bombus terrestris]
Length = 759
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/631 (52%), Positives = 451/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQY+YMLELKR LDAKGHCLLEMP+GTGKTI LLSLI +Y+
Sbjct: 1 MKISVDGLLVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L P + KLIYC+RTV E+EK + ELK L +Y + G KI+ + LSSRKN+C++
Sbjct: 61 LENPLDVTKLIYCSRTVPEIEKVIEELKKLMDYYEKETGSKPKIVGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VR + + C F+E ++ +PPG+Y++ DL
Sbjct: 121 VSREREGKIVDGRCHSLTASYVRERHNYDESTPICNFYEGFDMEGKEQFMPPGIYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ + WCPYFLAR + A +VVYSY YLLDPK+A +SKE+ K SVVVFDEAHNID
Sbjct: 181 KEYGRDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSKSSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+TLE ++ N+ + + + + D +L+ EY RLVEGL
Sbjct: 241 NVCIDSMSVKINRRTLEKSSANIQLLEKTVAEMREDDVNKLKEEYERLVEGLKDAHVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP +IL+E VPGNIR AEHF+ LRR V+YL+ RL ++V +E P +F+
Sbjct: 301 TDIILANPVLPDEILQEVVPGNIRNAEHFVGFLRRFVEYLKTRLRVQHVVQESPAAFLRD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ T+EITD +F + ATLV TYT+GF+II+EP
Sbjct: 361 VQTKVSIERKPLRFCAERLASLLRTMEITDLTDFSPAILVTHLATLVSTYTKGFTIIVEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P++ +P+L C D+S+A+KP+FDRFQSVVITSGTLSP+D+YP++LNFHPV+ S
Sbjct: 421 FDDKTPNVLNPILHFVCLDSSIAIKPIFDRFQSVVITSGTLSPLDMYPKILNFHPVIMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++ +G+DQ+ +S+K++ R D V RNYG+LLVE + VPDG+VCFF
Sbjct: 481 FTMTLARPCLLPMIVAKGNDQVAISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ ++A W D G++ ++ +HKL+FIETQD ET+LAL NY +AC+ GRGAV SVA
Sbjct: 541 SYLYMESVVAAWYDQGVVDQLQRHKLLFIETQDSAETSLALINYIRACENGRGAVLLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD H GR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSR 631
>gi|443703659|gb|ELU01094.1| hypothetical protein CAPTEDRAFT_167887 [Capitella teleta]
Length = 786
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/627 (52%), Positives = 460/627 (73%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
L+ + VYFPYD IYPEQY+YM ELKRALDA+GHC LEMP+GTGKT++LLSLI +Y+ +P
Sbjct: 31 LDGLLVYFPYDYIYPEQYAYMQELKRALDAQGHCALEMPSGTGKTVSLLSLIVAYMKQRP 90
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
+ KLIYC+RTV E+EK + ELK L Y R G + ++ + LSSRKNLC++ +
Sbjct: 91 LDVTKLIYCSRTVPELEKVVEELKNLIEYYERETGEPSTLVGLALSSRKNLCIHPELRGQ 150
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFG 184
+ +DA C TAS VR E+ +I C ++E+Y+ LPPG+Y L LR +G
Sbjct: 151 RDGKEIDARCHAMTASHVRNRHQEDDSIPVCSYYEDYDAHGREVPLPPGIYDLDKLREYG 210
Query: 185 KQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCI 244
++GWCPYF+AR+ + +++VVYSY YLLDPK+A ++SKE+ K+SVVVFDEAHNID+VCI
Sbjct: 211 TEKGWCPYFMARYAIMHSSIVVYSYYYLLDPKIADLVSKELSKKSVVVFDEAHNIDSVCI 270
Query: 245 EALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAW 304
E++S + R+T++ N+ ++ + I+ K D +L+ EY R+VEGL D
Sbjct: 271 ESMSCVISRRTVDKCHTNIEKLQECIDTIKEHDQQKLKDEYLRMVEGLRDANVARETDVV 330
Query: 305 LSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAH 364
LSNP LP ++L+EAVPG IR AEHFL ++R ++Y++ RL ++V +E P F+ I+
Sbjct: 331 LSNPVLPDEVLQEAVPGGIRNAEHFLVFMKRFLEYIKTRLRAQHVVQESPPVFLRDISNK 390
Query: 365 AGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDER 424
ID+K LRFC ERL SL+ TLE+T+ +F + + +FAT+V TYT+GF++I+EPFD+R
Sbjct: 391 VCIDRKPLRFCSERLRSLLRTLELTNLQDFSPLTLMANFATMVSTYTKGFTLIMEPFDDR 450
Query: 425 MPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS 484
P I +P+L SC DAS+A+KPVFDRFQSV+ITSGTLSP+D+YP++L+F PV S+ M+
Sbjct: 451 TPTISNPILHFSCMDASIAIKPVFDRFQSVIITSGTLSPLDIYPKILDFRPVTMSSYTMT 510
Query: 485 LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSY 544
L R CI P++++RG+DQ+ +S+KF+ R DP V RNYG LLV++ ++VPDG+V FF SY Y
Sbjct: 511 LARQCILPLIVSRGNDQVTISSKFETREDPDVIRNYGNLLVDLAAVVPDGVVAFFTSYVY 570
Query: 545 MDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKV 604
M+ I+A W D GI+ ++ +HK++FIETQD ET+LAL N++KACD GRGAV SVARGKV
Sbjct: 571 METIVAAWYDQGIIDQVQRHKVLFIETQDAAETSLALANFQKACDNGRGAVLLSVARGKV 630
Query: 605 AEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+EG+DFD HYGR VIMFGVP+ YT S+
Sbjct: 631 SEGVDFDHHYGRAVIMFGVPYVYTQSR 657
>gi|332026203|gb|EGI66345.1| TFIIH basal transcription factor complex helicase subunit
[Acromyrmex echinatior]
Length = 774
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/627 (52%), Positives = 452/627 (72%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
++ + VYFPYD IYPEQY+YMLELKR LDAKGHCLLEMP+GTGKTI LLSLI +Y+L P
Sbjct: 20 VDGLIVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYMLEHP 79
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
+ KLIYC+RTV E+EK + ELK L +Y + KI+ + LSSRKN+C++ V
Sbjct: 80 LDVTKLIYCSRTVPEIEKVIEELKKLIDYYEKETKSKPKIVGLVLSSRKNMCIHPEVSRE 139
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFG 184
VD C TAS+VR + + C F+E ++ ++PPG+Y++ DL+ +G
Sbjct: 140 REGKIVDGRCHSLTASYVRERHNYDESTPICNFYEGFDMEGREQIMPPGIYSIDDLKEYG 199
Query: 185 KQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCI 244
K + WCPYFLAR + A +VVYSY YLLDPK+A +SKE+ + SVV+FDEAHNIDNVCI
Sbjct: 200 KDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSRSSVVIFDEAHNIDNVCI 259
Query: 245 EALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAW 304
+++SV + R+T+E +T N+ + + + + D +L+ EY RLVEGL D
Sbjct: 260 DSMSVKINRKTMEKSTANIQLLEKTVAEMRQEDVNKLKEEYERLVEGLRDAQFQRETDVI 319
Query: 305 LSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAH 364
L+NP LP++IL+E +PGNIR AEHF+ L+R V+YL+ RL ++V +E P +F+ I A
Sbjct: 320 LANPILPNEILEEVIPGNIRNAEHFVSFLKRFVEYLKTRLRVQHVVQESPAAFLKDIQAK 379
Query: 365 AGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDER 424
I++K LRFC +RL SL+ T+EITD +F I + ATLV TYT GF+II+EPFD++
Sbjct: 380 VAIERKPLRFCAQRLASLLRTMEITDLTDFSPIILVTHLATLVSTYTHGFTIIVEPFDDK 439
Query: 425 MPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS 484
P + +P+L SC D+S+A+KP+FDRFQSVVITSGTLSP+D+YP++LNFHPV+ SF M+
Sbjct: 440 TPTVLNPILHFSCLDSSIAIKPIFDRFQSVVITSGTLSPLDMYPKVLNFHPVIMSSFTMT 499
Query: 485 LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSY 544
L R C+ PM++ +G+DQ+ +S+K++ R D V RNYG+LLVE + VPDG+VCFF SY Y
Sbjct: 500 LARPCLLPMIVAKGNDQVAISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFTSYLY 559
Query: 545 MDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKV 604
M+ ++A W D G++ ++ +HKL+FIETQD ET+LAL NY KAC+ GRGAV SVARGKV
Sbjct: 560 MESVVAAWYDQGVVDQLQRHKLLFIETQDSAETSLALINYIKACENGRGAVLLSVARGKV 619
Query: 605 AEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+EG+DFD H GR V+MFG+P+ YT S+
Sbjct: 620 SEGVDFDHHLGRAVLMFGIPYVYTQSR 646
>gi|146741362|dbj|BAF62336.1| DNA-repair protein complementing XP-D cells [Sus scrofa]
Length = 756
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/627 (54%), Positives = 458/627 (73%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y + P
Sbjct: 1 VDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYP 60
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++ V
Sbjct: 61 LEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPL 120
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFG 184
VD C TAS+VRA ++P++ C F+E ++ LP G+Y L DL+A G
Sbjct: 121 RFGKDVDGKCHSLTASYVRAQYQQDPSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKALG 180
Query: 185 KQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCI 244
++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI
Sbjct: 181 RRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCI 240
Query: 245 EALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAW 304
+++SV++ R+ L+ NL + + + R K TD RLR EY RLVEGL DA
Sbjct: 241 DSMSVNLTRRMLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAH 300
Query: 305 LSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAH 364
L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++ +
Sbjct: 301 LANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQR 360
Query: 365 AGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDER 424
I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEPFD+R
Sbjct: 361 VCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDR 420
Query: 425 MPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS 484
P I +PVL SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+
Sbjct: 421 TPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMT 480
Query: 485 LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSY 544
L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY Y
Sbjct: 481 LARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQY 540
Query: 545 MDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKV 604
M+ +A W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV
Sbjct: 541 MESTVAAWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKV 600
Query: 605 AEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 SEGIDFVHHYGRAVIMFGVPYVYTQSR 627
>gi|219112193|ref|XP_002177848.1| xeroderma pigmentosum group D complementing protein [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217410733|gb|EEC50662.1| xeroderma pigmentosum group D complementing protein [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 782
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/660 (53%), Positives = 474/660 (71%), Gaps = 33/660 (5%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F L+ + V+FPYD IY EQ+ YM LK++LDA GHCLLEMPTGTGKT+ LLSLITSY
Sbjct: 1 MRFDLDGLDVFFPYDRIYLEQHQYMRALKQSLDAGGHCLLEMPTGTGKTVCLLSLITSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG-------------------PA 101
+ P + KL+YCTRTV EM + EL + Y+++ L P
Sbjct: 61 FANP-SAGKLVYCTRTVPEMNHVMEELATVLAYRSQELQRHQEENILPMDTDGDIENVPV 119
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFEN 160
A L LSSR+N+CV+ RV+A +R++VDAACR TASWV A + P +IETC +++N
Sbjct: 120 AGTLC--LSSRRNMCVHERVMAESDREAVDAACRSLTASWVLEEAQKRPGSIETCSYYDN 177
Query: 161 YEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGI 220
+ A + +P GVY L++L+ +GK++GWCPY+L R + AN++V++YQY+LDPKVA +
Sbjct: 178 FHAAGESTSMPSGVYDLEELQKWGKRRGWCPYYLTRQAINHANILVFNYQYMLDPKVAKM 237
Query: 221 ISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGR 280
+SKE++ ES+VVFDEAHNID+VCIEALSV++ + LE ATR+L R++ E+ R KA+D R
Sbjct: 238 VSKELEAESIVVFDEAHNIDSVCIEALSVTINDRGLEQATRSLGRLSSEVSRLKASDNQR 297
Query: 281 LRAEYNRLVEGLALRGNL--PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQ 338
L+ EY LV GL +G L P DA L++ L D+L EAVPGNIRRAEHF+ ++++V+
Sbjct: 298 LQTEYQNLVNGLIDQGLLDAPANDAGLTSNVLNPDVLNEAVPGNIRRAEHFIGFMKKVVE 357
Query: 339 YLRGRLET-----ENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDE 393
+L+ RL + V E P++F+ +T ++ K LRF Y RL SL+ TL++++ D+
Sbjct: 358 HLKARLRSVAGPNGGVRSETPLAFLHRMTNGTSLEAKPLRFAYSRLSSLLRTLQVSNLDD 417
Query: 394 FLHIQTICDFATLVGTYTRG---FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR 450
F + + DF++L+ Y+ G F+II+EP +P DPV+QL C D+SLA+ P+F R
Sbjct: 418 FNSLTDVADFSSLLAAYSEGVAKFAIIMEPNGSSIPGATDPVIQLVCLDSSLAIAPLFKR 477
Query: 451 FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM 510
F SV+ITSGTLSPIDLYP+LL F P VS S MS R CI P+V+T+GSDQL VSTK++
Sbjct: 478 FGSVIITSGTLSPIDLYPKLLQFEPCVSESLSMSTFRPCIRPLVITKGSDQLAVSTKYED 537
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE 570
R D GV RNYG +LVE+ S +PDG+V FF SYSYM+ +I+ W+ GIL+E+ + KLVFIE
Sbjct: 538 RGDMGVIRNYGTMLVELCSTIPDGVVAFFTSYSYMESLISEWDAIGILRELTKSKLVFIE 597
Query: 571 TQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
T+DVVETTLALDNYR+ACDCGRGAVF SVARGKV+EGI+FDRHYGR VIMFGVPFQYTLS
Sbjct: 598 TKDVVETTLALDNYRRACDCGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLS 657
>gi|395854140|ref|XP_003799556.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 1 [Otolemur garnettii]
Length = 760
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/631 (54%), Positives = 458/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDTSLPHCRFYEEFDAHGRQVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KTLGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+ L+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRILDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEITD +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFESREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|66827895|ref|XP_647302.1| transcription factor IIH component [Dictyostelium discoideum AX4]
gi|74859460|sp|Q55G81.1|ERCC2_DICDI RecName: Full=TFIIH basal transcription factor complex helicase
repD subunit; AltName: Full=DNA excision repair
cross-complementing protein-2 homolog; AltName: Full=DNA
repair protein D
gi|60475224|gb|EAL73159.1| transcription factor IIH component [Dictyostelium discoideum AX4]
Length = 776
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/632 (53%), Positives = 460/632 (72%), Gaps = 9/632 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F +ED+ VYFPY IYPEQYSYM+ LKR+LD G C+LEMP+GTGKT++LLSLI+SY
Sbjct: 1 MKFYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNGGPCILEMPSGTGKTVSLLSLISSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA-KILAIGLSSRKNLCVNS 119
+ P +KLIYC+RTV E+E+ E + + Y+ +G + K L + +SSR+NLC+
Sbjct: 61 VKNPS--IKLIYCSRTVPEIEQATEEARRVLQYRNSEMGEESPKTLCMSMSSRRNLCIQP 118
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
RV + VDA CR+ T+SW R E+P E C+FFEN+E + +L GVY+L+D
Sbjct: 119 RVSEERDGKVVDALCRELTSSWNR----ESPTSEKCKFFENFE-SNGKEILLEGVYSLED 173
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L+ +G + CPYFL+RHM+ FAN+V++SYQYLLDPK+A +IS S+VVFDEAHNI
Sbjct: 174 LKEYGLKHQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSSFPSNSIVVFDEAHNI 233
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCI ALS+++ + L+ +++N+++IN++IE K D RL+ EY RLV GLA G+
Sbjct: 234 DNVCINALSINIDNKLLDTSSKNIAKINKQIEDIKKVDEKRLKDEYQRLVNGLARSGSTR 293
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
AD S+P LP+D+++EAVPGNIR+AEHF+ +LRR+V YL+ RL+++ + E P++F+
Sbjct: 294 -ADETTSDPVLPNDVIQEAVPGNIRKAEHFISLLRRVVDYLKSRLKSQMLLSESPLAFLQ 352
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
+ I +TLRFC RL SL+ TL I D ++F I I DFATLVGTY GF IIIE
Sbjct: 353 GLYHATQISSRTLRFCSSRLSSLLRTLRINDVNQFSGISLIADFATLVGTYNNGFLIIIE 412
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
P+ +R + D + Q C DAS+ +KP+FD+++SVVITSGTLSP+D+Y ++LNF P V
Sbjct: 413 PYYQRQNNTYDQIFQFCCLDASIGMKPIFDKYRSVVITSGTLSPLDIYTKMLNFRPTVVE 472
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
MSL R+CICP +LTRGSDQ+ +STKFD+RSD V RNYG LLVE+ +IVPDGI+CFF
Sbjct: 473 RLTMSLNRNCICPCILTRGSDQISISTKFDVRSDTAVVRNYGALLVEVSAIVPDGIICFF 532
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
SYSYM++I++ WN+ G+L I+ +KL+F+ET D E+ LAL NY+KACD GRGAV SV
Sbjct: 533 TSYSYMEQIVSVWNEMGLLNNILTNKLIFVETSDPAESALALQNYKKACDSGRGAVLLSV 592
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ARGKV+EGIDFD YGR VI++G+P+ T SK
Sbjct: 593 ARGKVSEGIDFDNQYGRCVILYGIPYINTESK 624
>gi|350400679|ref|XP_003485920.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Bombus impatiens]
Length = 777
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/627 (52%), Positives = 450/627 (71%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
++ + VYFPYD IYPEQY+YMLELKR LDAKGHCLLEMP+GTGKTI LLSLI +Y+L P
Sbjct: 23 VDGLLVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYMLENP 82
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
+ KLIYC+RTV E+EK + ELK L +Y + KI+ + LSSRKN+C++ V
Sbjct: 83 LDVTKLIYCSRTVPEIEKVIEELKKLMDYYEKETESKPKIVGLVLSSRKNMCIHPEVSRE 142
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFG 184
VD C TAS+VR + + C F+E ++ +PPG+Y++ DL+ +G
Sbjct: 143 REGKIVDGRCHSLTASYVRERHNYDESTPICNFYEGFDMEGKEQFMPPGIYSIDDLKEYG 202
Query: 185 KQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCI 244
+ + WCPYFLAR + A +VVYSY YLLDPK+A +SKE+ K SVVVFDEAHNIDNVCI
Sbjct: 203 RDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSKSSVVVFDEAHNIDNVCI 262
Query: 245 EALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAW 304
+++SV + R+TLE ++ N+ + + + + D +L+ EY RLVEGL D
Sbjct: 263 DSMSVKINRRTLEKSSANIQLLEKTVAEMREDDVNKLKEEYERLVEGLKDAHVARETDII 322
Query: 305 LSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAH 364
L+NP LP +IL+E VPGNIR AEHF+ LRR V+YL+ RL ++V +E P +F+ +
Sbjct: 323 LANPVLPDEILQEVVPGNIRNAEHFVGFLRRFVEYLKTRLRVQHVVQESPAAFLRDVQTK 382
Query: 365 AGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDER 424
I++K LRFC ERL SL+ T+EITD +F + + ATLV TYT+GF+II+EPFD++
Sbjct: 383 VSIERKPLRFCAERLASLLRTMEITDLTDFSPVILVTHLATLVSTYTKGFTIIVEPFDDK 442
Query: 425 MPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS 484
P++ +P+L C D+S+A+KP+FDRFQSVVITSGTLSP+D+YP++LNFHPV+ SF M+
Sbjct: 443 TPNVLNPILHFVCLDSSIAIKPIFDRFQSVVITSGTLSPLDMYPKILNFHPVIMSSFTMT 502
Query: 485 LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSY 544
L R C+ PM++ +G+DQ+ +S+K++ R D V RNYG+LLVE + VPDG+VCFF SY Y
Sbjct: 503 LARPCLLPMIVAKGNDQVAISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFTSYLY 562
Query: 545 MDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKV 604
M+ ++A W D G++ ++ +HKL+FIETQD ET+LAL NY +AC+ GRGAV SVARGKV
Sbjct: 563 MESVVAAWYDQGVVDQLQRHKLLFIETQDSAETSLALINYIRACENGRGAVLLSVARGKV 622
Query: 605 AEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+EG+DFD H GR V+MFG+P+ YT S+
Sbjct: 623 SEGVDFDHHLGRAVLMFGIPYVYTQSR 649
>gi|74219327|dbj|BAE26794.1| unnamed protein product [Mus musculus]
Length = 760
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/631 (54%), Positives = 459/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + E + L ++ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEERRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +PVL SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 631
>gi|195430790|ref|XP_002063431.1| GK21904 [Drosophila willistoni]
gi|194159516|gb|EDW74417.1| GK21904 [Drosophila willistoni]
Length = 769
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/631 (52%), Positives = 454/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY+YMLELKR+LDAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE KLIYC+RTV E+EK +AEL+ L Y RH + + LSSRKN+C++
Sbjct: 61 IEHPETIRKLIYCSRTVPEIEKVIAELQNLMVYYERHSDNPPAMTGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +VD C TAS+VR + C++FE + A LP G+Y++ D+
Sbjct: 121 VSKEREGKAVDGKCYGLTASYVRDRHEMDAETPICQYFEGFSLEGKEAALPVGIYSIDDM 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ FG+ + WCPYF+ARH + A++VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNID
Sbjct: 181 KEFGRSRNWCPYFMARHAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+T+E +T L+++ + ++ + D RL EY R+V+GL
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQEIREEDTNRLNEEYQRMVQGLKDATVQRD 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP+D+L E VPGNIR A+HFL LRR ++Y++ RL +V +E F+
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESSAGFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I++ I++K LRFC ERL SL+ TLEITD EF + I FATLV TYT+GF+IIIEP
Sbjct: 361 ISSKICIERKPLRFCAERLSSLLRTLEITDLTEFGALTLITHFATLVSTYTKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P+L SC D+S+A+ PVF RFQ+VVITSGTLSP+D+YP++L+F PVV S
Sbjct: 421 FDDKTPTVSNPILYFSCMDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++++G+DQ+ +S+KF+ R D V RNYG+LLVE+ VPDG+VCFF
Sbjct: 481 FTMTLARPCLLPMIVSKGNDQVAISSKFETREDTAVIRNYGQLLVEVAKTVPDGVVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KACDCGRGAV +VA
Sbjct: 541 SYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHYGRAVLMFGIPYVYTQSR 631
>gi|328786210|ref|XP_396155.4| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Apis mellifera]
Length = 759
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/631 (52%), Positives = 452/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQY+YMLELKR LDAKGHCLLEMP+GTGKTI LLSLI +Y+
Sbjct: 1 MKISVDGLLVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L P + KLIYC+RTV E+EK + ELK L +Y + KI+ + LSSRKN+C++
Sbjct: 61 LENPLDVTKLIYCSRTVPEIEKVIEELKKLMDYYEKETDNKPKIVGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VR + + C F+E ++ ++P G+Y++ DL
Sbjct: 121 VSREREGKIVDGRCHSLTASYVRERHNYDDSTPICNFYEGFDMEGKEQIMPSGIYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +GK + WCPYFLAR + A +VVYSY YLLDPK+A +S+E+ K SVV+FDEAHNID
Sbjct: 181 KEYGKDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSRELSKSSVVIFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+TLE ++ N+ + + + + D +L+ EY RLVEGL
Sbjct: 241 NVCIDSMSVKINRRTLEKSSANIQLLEKTVAEMREDDVNKLKEEYERLVEGLKDAHVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP+++L+E VPGNIR AEHF+ L+R V+YL+ RL ++V +E P +F+
Sbjct: 301 TDIILANPVLPNEVLQEVVPGNIRNAEHFVSFLKRFVEYLKTRLRVQHVVQESPAAFLRD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ T+EITD +F I + ATLV TYT+GF+II+EP
Sbjct: 361 VQTKVSIERKPLRFCAERLASLLRTMEITDLTDFSPIILVTHLATLVSTYTKGFTIIVEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P++ +P+L C D+S+A+KP+FDRFQSVVITSGTLSP+D+YP++LNFHPV+ S
Sbjct: 421 FDDKTPNVLNPILHFVCLDSSIAMKPIFDRFQSVVITSGTLSPLDMYPKILNFHPVIMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++ +G+DQ+ +S+K++ R D V RNYG+LLVE + VPDG+VCFF
Sbjct: 481 FTMTLARPCLLPMIVAKGNDQVAISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ ++A W D G++ ++ +HKL+FIETQD ET+LAL NY KAC+ GRGAV SVA
Sbjct: 541 SYLYMESVVAAWYDQGVVDQLQRHKLLFIETQDSAETSLALINYIKACENGRGAVLLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD H GR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSR 631
>gi|380014617|ref|XP_003691322.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Apis florea]
Length = 759
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/631 (52%), Positives = 452/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQY+YMLELKR LDAKGHCLLEMP+GTGKTI LLSLI +Y+
Sbjct: 1 MKISVDGLLVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L P + KLIYC+RTV E+EK + ELK L +Y + KI+ + LSSRKN+C++
Sbjct: 61 LENPLDVTKLIYCSRTVPEIEKVIEELKKLMDYYEKETENKPKIVGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VR + + C F+E ++ ++P G+Y++ DL
Sbjct: 121 VSREREGKIVDGRCHSLTASYVRERHNYDDSTPICNFYEGFDMEGKEQIMPSGIYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +GK + WCPYFLAR + A +VVYSY YLLDPK+A +S+E+ K SVV+FDEAHNID
Sbjct: 181 KEYGKDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSRELSKNSVVIFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+TLE ++ N+ + + + + D +L+ EY RLVEGL
Sbjct: 241 NVCIDSMSVKINRRTLEKSSANIQLLEKTVAEMREDDVNKLKEEYERLVEGLKDAHVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP+++L+E VPGNIR AEHF+ L+R V+YL+ RL ++V +E P +F+
Sbjct: 301 TDIILANPVLPNEVLQEVVPGNIRNAEHFVSFLKRFVEYLKTRLRVQHVVQESPAAFLRD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ T+EITD +F I + ATLV TYT+GF+II+EP
Sbjct: 361 VQTKVSIERKPLRFCAERLASLLRTMEITDLTDFSPIILVTHLATLVSTYTKGFTIIVEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P++ +P+L C D+S+A+KP+FDRFQSVVITSGTLSP+D+YP++LNFHPV+ S
Sbjct: 421 FDDKTPNVLNPILHFVCLDSSIAMKPIFDRFQSVVITSGTLSPLDMYPKILNFHPVIMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++ +G+DQ+ +S+K++ R D V RNYG+LLVE + VPDG+VCFF
Sbjct: 481 FTMTLARPCLLPMIVAKGNDQVAISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ ++A W D G++ ++ +HKL+FIETQD ET+LAL NY KAC+ GRGAV SVA
Sbjct: 541 SYLYMESVVAAWYDQGVVDQLQRHKLLFIETQDSAETSLALINYIKACENGRGAVLLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD H GR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSR 631
>gi|347969002|ref|XP_311900.4| AGAP002988-PA [Anopheles gambiae str. PEST]
gi|333467742|gb|EAA08105.4| AGAP002988-PA [Anopheles gambiae str. PEST]
Length = 760
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/631 (52%), Positives = 453/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY+YMLELKR DAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 1 MRISVDGLLVYFPYEYIYPEQYAYMLELKRTFDAKGHCLLEMPSGTGKTTTLLSLIVAYI 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L P KLIYC+RTV E+EK +AELK L NY + G I + LSSRKN+C++
Sbjct: 61 LENPHVVRKLIYCSRTVPEIEKVIAELKHLMNYYEKQTGAMPNITGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VDA C TAS+VR AA + + C+++E ++ +LPPGVY++ DL
Sbjct: 121 VSREREGKIVDARCYGMTASYVRERAAHDESAPVCQYYEGFQAEGKENMLPPGVYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ FG+++ WCPYFL+R + A+VVVYSY YLLDPKVA ++SKE+ +ESVVV DEAHNID
Sbjct: 181 KEFGRERNWCPYFLSRFAINQAHVVVYSYYYLLDPKVAEVVSKELARESVVVCDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVC++++SV + R+ +E +T + + +++ K D RL EY RLV+GL
Sbjct: 241 NVCVDSMSVKINRRLIERSTTGIHNLEKKVAELKEDDKRRLNEEYVRLVQGLKDASFARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP+++++E VPGNIR A+HFL L+R ++Y++ RL ++V +E P F+
Sbjct: 301 TDMVLANPVLPNEVIREVVPGNIRNADHFLSFLKRFIEYIKSRLRVQHVVQESPAGFLRD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC +RL SL+ TLEITD E+ + I FATLV TYT+GF+IIIEP
Sbjct: 361 VQQKVCIERKPLRFCADRLQSLLRTLEITDLSEYGPLSVITSFATLVSTYTKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P++ SC D+S+A+KP+F RFQSVVITSGTLSP+D+YP++L+F PVV S
Sbjct: 421 FDDKTPTVSNPIMHFSCLDSSIAMKPIFQRFQSVVITSGTLSPMDMYPKILDFEPVVMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++ RG+DQ+ +S++F+ R D V RNYG+LLVE VPDG+VCFF
Sbjct: 481 FTMTLARPCLLPMIVARGNDQVAISSRFETREDTAVTRNYGQLLVETAKTVPDGVVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KAC+CGRGAV +VA
Sbjct: 541 SYLYLESVVASWYDQGIIDTLLRYKLLFIETQDNAETSYALMNYVKACECGRGAVLLAVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD H GR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSR 631
>gi|195346339|ref|XP_002039723.1| GM15813 [Drosophila sechellia]
gi|194135072|gb|EDW56588.1| GM15813 [Drosophila sechellia]
Length = 769
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/631 (52%), Positives = 453/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY+YMLELKR+LDAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE KLIYC+RTV E+EK +AEL+ L Y RH + LSSRKN+C++
Sbjct: 61 VEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +VD C TAS++R + C++FE + + LP GVY++ DL
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHDMDAETPICQYFEGFSLEGKESTLPVGVYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ + WCPYFLAR+ + A++VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+T+E +T L+ + + ++ + D RL EY R+V+GL
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP+D+L E VPGNIR A+HFL LRR ++Y++ RL +V +E P F+
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I++ I++K LRFC ERL SL+ TLEI D EF + I FATLV TYT+GF+IIIEP
Sbjct: 361 ISSKICIERKPLRFCAERLSSLLRTLEINDLTEFGALTLITHFATLVSTYTKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P+L SC D+S+A+ PVF RFQ+VVITSGTLSP+D+YP++L+F PVV S
Sbjct: 421 FDDKTPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+LTR C+ PM++++G+DQ+ +S+KF+ R D V RNYG+LLVE+ VPDGIVCFF
Sbjct: 481 FTMTLTRPCLLPMIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KACDCGRGAV +VA
Sbjct: 541 SYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHYGRAVLMFGIPYVYTQSR 631
>gi|195382171|ref|XP_002049804.1| GJ20544 [Drosophila virilis]
gi|194144601|gb|EDW60997.1| GJ20544 [Drosophila virilis]
Length = 769
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/631 (52%), Positives = 456/631 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY+YMLELKR+LDAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE KLIYC+RTV E+EK +AEL+ L Y RH + + LSSRKN+C++
Sbjct: 61 IEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYDRHCPVPPGLTGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +VD C TAS++R + + C++FE + + LP G+Y+L DL
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIREHHELDAEVPICQYFEGFTLEGKESTLPVGIYSLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ + WCPYFLAR+ + A++VVYSY YLLDPK+A ++SKEM +E+ VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMTREACVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+ +E +T L+++ + ++ + D RL EY R+V+GL
Sbjct: 241 NVCIDSMSVKINRRIVERSTNALNQLTKLVQDMREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LPSD+LKE VPGNIR A+HFL LRR V+Y++ RL +V +E P F+
Sbjct: 301 TDMILANPVLPSDVLKEVVPGNIRNADHFLSFLRRFVEYIKTRLRVHHVVQESPAGFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+++ I++K LRFC ERL SL+ TLEI+D E+ + I FATLV TYT+GF+IIIEP
Sbjct: 361 VSSKICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P++ SC D+S+A+ PVF RFQ+VVITSGTLSP+D+YP++L+F PVV S
Sbjct: 421 FDDKTPTVSNPIMHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++++G+DQ+ +S+KF+ R D V RNYG+LLVE+ VPDGIVCFF
Sbjct: 481 FTMTLARPCLLPMIVSKGNDQVAISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KACDCGRGAV +VA
Sbjct: 541 SYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHYGRAVLMFGIPYVYTQSR 631
>gi|195585328|ref|XP_002082441.1| GD11571 [Drosophila simulans]
gi|194194450|gb|EDX08026.1| GD11571 [Drosophila simulans]
Length = 769
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/631 (52%), Positives = 453/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY+YMLELKR+LDAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE KLIYC+RTV E+EK +AEL+ L Y RH + LSSRKN+C++
Sbjct: 61 VEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +VD C TAS++R + C++FE + + LP GVY++ DL
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHDMDAETPICQYFEGFSLEGKESTLPVGVYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ + WCPYFLAR+ + A++VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+T+E +T L+ + + ++ + D RL EY R+V+GL
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP+D+L E VPGNIR A+HFL LRR ++Y++ RL +V +E P F+
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I++ I++K LRFC ERL SL+ TLEI+D EF + I FATLV TYT+GF+IIIEP
Sbjct: 361 ISSKICIERKPLRFCAERLSSLLRTLEISDLTEFGALTLITHFATLVSTYTKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P+L SC D+S+A+ PVF RFQ+VVITSGTLSP+D+YP++L+F PVV S
Sbjct: 421 FDDKTPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++++G+DQ+ +S+KF+ R D V RNYG+LLVE+ VPDGIVCFF
Sbjct: 481 FTMTLARPCLLPMIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KACDCGRGAV +VA
Sbjct: 541 SYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHYGRAVLMFGIPYVYTQSR 631
>gi|351706985|gb|EHB09904.1| TFIIH basal transcription factor complex helicase subunit, partial
[Heterocephalus glaber]
Length = 759
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/629 (53%), Positives = 457/629 (72%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y +
Sbjct: 2 LNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQWA 61
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++ V
Sbjct: 62 YPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVT 121
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL+A
Sbjct: 122 PLRFGKDVDGKCHSLTASYVRAQYQQDASMPHCRFYEEFDAHGRQVPLPTGIYNLDDLKA 181
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G++QGWCPYFLAR+ + AN VY+Y YLLDPK+A ++SKE+ +++VVVFDEAHNIDNV
Sbjct: 182 LGQRQGWCPYFLARYSILHANEGVYTYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNV 241
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
CI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL D
Sbjct: 242 CIDSMSVNLTRRTLDRCQANLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETD 301
Query: 303 AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASIT 362
A L+NP LP ++L+EAVPG+IR AEHFL LRRL+++++ RL ++V +E P +F++S+
Sbjct: 302 AHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEFIKWRLRVQHVVQESPPAFLSSLA 361
Query: 363 AHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFD 422
I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEPFD
Sbjct: 362 QRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFD 421
Query: 423 ERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFK 482
+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F
Sbjct: 422 DRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFT 481
Query: 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSY 542
M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY
Sbjct: 482 MTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSY 541
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARG 602
YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRG + SVARG
Sbjct: 542 QYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGPILLSVARG 601
Query: 603 KVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
KV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 602 KVSEGIDFVHHYGRAVIMFGVPYVYTQSR 630
>gi|338710190|ref|XP_001500524.3| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit-like [Equus caballus]
Length = 785
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/629 (53%), Positives = 457/629 (72%), Gaps = 3/629 (0%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y +
Sbjct: 31 LNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRA 90
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
P KLIYC+RTV E+EK + EL+ L N+ + G + L + LSSRKNLC++ V
Sbjct: 91 YPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLQFLGLALSSRKNLCIHPEVT 150
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL+A
Sbjct: 151 PLRFGKDVDGKCHSLTASYVRAQHQQDASLPHCRFYEEFDTHGRQVPLPSGIYNLDDLKA 210
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNV
Sbjct: 211 VGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNV 270
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
CI+++SV++ R+TL+ NL + + + R D RLR EY RLVEGL D
Sbjct: 271 CIDSMSVTITRRTLDRCQGNLETLQKTVLR---ADEQRLRDEYRRLVEGLREASAARETD 327
Query: 303 AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASIT 362
A L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++ +
Sbjct: 328 AHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKXRLRVQHVVQESPPAFLSGLA 387
Query: 363 AHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFD 422
I K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEPFD
Sbjct: 388 QRVCIQYKILRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFD 447
Query: 423 ERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFK 482
+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F
Sbjct: 448 DRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFT 507
Query: 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSY 542
M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY
Sbjct: 508 MTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSY 567
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARG 602
YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARG
Sbjct: 568 QYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARG 627
Query: 603 KVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
KV+EGIDF HYGR V+MFGVP+ YT S+
Sbjct: 628 KVSEGIDFVHHYGRAVLMFGVPYVYTQSR 656
>gi|45551134|ref|NP_726036.2| xeroderma pigmentosum D, isoform A [Drosophila melanogaster]
gi|45445340|gb|AAM70857.2| xeroderma pigmentosum D, isoform A [Drosophila melanogaster]
Length = 769
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/631 (52%), Positives = 453/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY+YMLELKR+LDAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE KLIYC+RTV E+EK +AEL+ L Y RH + LSSRKN+C++
Sbjct: 61 VEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +VD C TAS++R + C++FE + + LP GVY++ DL
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ + WCPYFLAR+ + A++VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+T+E +T L+ + + ++ + D RL EY R+V+GL
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP+D+L E VPGNIR A+HFL LRR ++Y++ RL +V +E P F+
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I++ I++K LRFC ERL SL+ TLEI+D E+ + I FATLV TYT+GF+IIIEP
Sbjct: 361 ISSKICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P+L SC D+S+A+ PVF RFQ+VVITSGTLSP+D+YP++L+F PVV S
Sbjct: 421 FDDKTPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++++G+DQ+ +S+KF+ R D V RNYG+LLVE+ VPDGIVCFF
Sbjct: 481 FTMTLARPCLLPMIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KACDCGRGAV +VA
Sbjct: 541 SYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHYGRAVLMFGIPYVYTQSR 631
>gi|195170160|ref|XP_002025881.1| GL10160 [Drosophila persimilis]
gi|198461162|ref|XP_002138963.1| GA25100 [Drosophila pseudoobscura pseudoobscura]
gi|194110745|gb|EDW32788.1| GL10160 [Drosophila persimilis]
gi|198137256|gb|EDY69521.1| GA25100 [Drosophila pseudoobscura pseudoobscura]
Length = 769
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/631 (52%), Positives = 453/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY+YMLELKR LDAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 1 MKISIDGLLVYFPYEYIYPEQYAYMLELKRTLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE KLIYC+RTV E+EK +AEL+ L Y R + + LSSRKNLC++
Sbjct: 61 IEHPETIRKLIYCSRTVPEIEKVIAELQNLMVYYERECVKPPAMTGLVLSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +VD C TAS++R + + C++FE + + LP G+Y+L DL
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRDKHELDTDTPICQYFEGFSLEGKESTLPIGIYSLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ + WCPYFLAR+ + A +VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAISHAQIVVYSYHYLLDPKIAQVVSKEMTRESCVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+T+E +T L+++ + ++ + D RL EY R+V+GL
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++NP LP+D+L E VPGNIR A+HFL LRR +++++ RL +V +E P F+
Sbjct: 301 TDMIMANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEFIKTRLRVHHVVQESPAGFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I+A I++K LRFC ERL SL+ TLEITD E+ + I FATLV TYT+GF+IIIEP
Sbjct: 361 ISAKICIERKPLRFCAERLSSLLRTLEITDMTEYGALTLITHFATLVSTYTKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P+L SC D+S+A+ PVF RFQ+VVITSGTLSP+D+YP++L+F PVV S
Sbjct: 421 FDDKTPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++++G+DQ+ +S+KF+ R D V RNYG+LLVE+ VPDG+VCFF
Sbjct: 481 FTMTLARPCLLPMIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGVVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KACDCGRGAV +VA
Sbjct: 541 SYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHYGRAVLMFGIPYVYTQSR 631
>gi|281183417|gb|ADA53577.1| RH28463p [Drosophila melanogaster]
Length = 781
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/631 (52%), Positives = 453/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY+YMLELKR+LDAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 13 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 72
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE KLIYC+RTV E+EK +AEL+ L Y RH + LSSRKN+C++
Sbjct: 73 VEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPE 132
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +VD C TAS++R + C++FE + + LP GVY++ DL
Sbjct: 133 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 192
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ + WCPYFLAR+ + A++VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNID
Sbjct: 193 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 252
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+T+E +T L+ + + ++ + D RL EY R+V+GL
Sbjct: 253 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 312
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP+D+L E VPGNIR A+HFL LRR ++Y++ RL +V +E P F+
Sbjct: 313 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 372
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I++ I++K LRFC ERL SL+ TLEI+D E+ + I FATLV TYT+GF+IIIEP
Sbjct: 373 ISSKICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEP 432
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P+L SC D+S+A+ PVF RFQ+VVITSGTLSP+D+YP++L+F PVV S
Sbjct: 433 FDDKTPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSS 492
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++++G+DQ+ +S+KF+ R D V RNYG+LLVE+ VPDGIVCFF
Sbjct: 493 FTMTLARPCLLPMIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFT 552
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KACDCGRGAV +VA
Sbjct: 553 SYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVA 612
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR V+MFG+P+ YT S+
Sbjct: 613 RGKVSEGVDFDHHYGRAVLMFGIPYVYTQSR 643
>gi|194881824|ref|XP_001975021.1| GG22096 [Drosophila erecta]
gi|190658208|gb|EDV55421.1| GG22096 [Drosophila erecta]
Length = 769
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/631 (52%), Positives = 454/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY+YMLELKR+LDAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE KLIYC+RTV E+EK +AEL+ L Y R + + LSSRKN+C++
Sbjct: 61 VEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERQCPNPPPLTGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +VD C TAS++R + C++FE + + LP GVY++ DL
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHEMDAETPICQYFEGFSMEGKESTLPVGVYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ + WCPYFLAR+ + A++VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+T+E +T L+++ + ++ + D RL EY R+V+GL
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP+D+L E VPGNIR A+HFL LRR ++Y++ RL +V +E P F+
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I++ I++K LRFC ERL SL+ TLEI+D E+ + I FATLV TYT+GF+IIIEP
Sbjct: 361 ISSKICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P+L SC D+S+A+ PVF RFQ+VVITSGTLSP+D+YP++L+F PVV S
Sbjct: 421 FDDKTPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++++G+DQ+ +S+KF+ R D V RNYG+LLVE+ VPDGIVCFF
Sbjct: 481 FTMTLARPCLLPMIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KACDCGRGAV +VA
Sbjct: 541 SYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHYGRAVLMFGIPYVYTQSR 631
>gi|195486599|ref|XP_002091573.1| GE12176 [Drosophila yakuba]
gi|194177674|gb|EDW91285.1| GE12176 [Drosophila yakuba]
Length = 769
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/631 (52%), Positives = 454/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY+YMLELKR+LDAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE KLIYC+RTV E+EK +AEL+ L Y R+ + + LSSRKN+C++
Sbjct: 61 VEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERNCPNPPPLTGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +VD C TAS++R + C++FE + + LP GVY++ DL
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHEMDAETPICQYFEGFSMEGKESTLPVGVYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ + WCPYFLAR+ + A++VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNID
Sbjct: 181 KEYGRARNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+T+E +T L+++ + ++ + D RL EY R+V+GL
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP+D+L E VPGNIR A+HFL LRR ++Y++ RL +V +E P F+
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I+ I++K LRFC ERL SL+ TLEI+D E+ + I FATLV TYT+GF+IIIEP
Sbjct: 361 ISTKICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P+L SC D+S+A+ PVF RFQ+VVITSGTLSP+D+YP++L+F PVV S
Sbjct: 421 FDDKTPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++++G+DQ+ +S+KF+ R D V RNYG+LLVE+ VPDGIVCFF
Sbjct: 481 FTMTLARPCLLPMIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KACDCGRGAV +VA
Sbjct: 541 SYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHYGRAVLMFGIPYVYTQSR 631
>gi|195025610|ref|XP_001986090.1| GH20727 [Drosophila grimshawi]
gi|193902090|gb|EDW00957.1| GH20727 [Drosophila grimshawi]
Length = 769
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/631 (51%), Positives = 453/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY+YMLELKR+LDAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE KLIYC+RTV E+EK +AEL+ L Y +H + + LSSRKN+C++
Sbjct: 61 IEHPERIRKLIYCSRTVPEIEKVIAELQNLMVYYDKHAHTPPGMTGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +VD C TAS++R + + C++FE + + LP G+Y++ DL
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHEMDAEVPICQYFEGFTLEGKESTLPVGIYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ + WCPYF AR+ + A++VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFTARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMTRESCVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+T+E +T L+ + + ++ + D RL EY R+V+GL
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNNLTKLVQDMRDEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP D+L E VPGNIR A+HFL LRR ++Y++ RL +V +E P F+
Sbjct: 301 TDMILANPVLPKDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+++ I++K LRFC ERL SL+ TLEI+D EF + I FATLV TYT+GF+IIIEP
Sbjct: 361 VSSKICIERKPLRFCAERLSSLLRTLEISDMTEFGALTLITHFATLVSTYTKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P++ SC D+S+A+ PVF RFQ+VVITSGTLSP+D+YP++L+F PVV S
Sbjct: 421 FDDKTPTVSNPIMHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++++G+DQ+ +S+KF+ R D V RNYG+LLVE+ VPDGIVCFF
Sbjct: 481 FTMTLARPCLLPMIVSKGNDQVSISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KACDCGRGAV +VA
Sbjct: 541 SYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHYGRAVLMFGIPYVYTQSR 631
>gi|242024030|ref|XP_002432433.1| TFIIH basal transcription factor complex helicase subunit, putative
[Pediculus humanus corporis]
gi|212517866|gb|EEB19695.1| TFIIH basal transcription factor complex helicase subunit, putative
[Pediculus humanus corporis]
Length = 747
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/631 (51%), Positives = 456/631 (72%), Gaps = 13/631 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQY+YM+ELK+ LDAKGHCLLEMP+GTGKT LLSL+ SY+
Sbjct: 1 MKLCVDGLLVYFPYDYIYPEQYAYMIELKKGLDAKGHCLLEMPSGTGKTTTLLSLVVSYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L+ P + KLIYC+RTV E+EK + EL+LL Y + G A K+L + R+ V+ R
Sbjct: 61 LTYPLDVTKLIYCSRTVPEIEKVVEELRLLFKYIEQETGKATKMLGLVSKEREGKVVDGR 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
C TAS++R N ++ C+F+E ++ + PG Y++ D+
Sbjct: 121 -------------CHSLTASYIREQHRYNKSVPICDFYEGFDCFGREDSVMPGAYSIDDI 167
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ + + +G+CPYFLARH++ AN++VYSY YLLDPK+A ++SKE+ K +VVVFDEAHNID
Sbjct: 168 KNYAQTKGYCPYFLARHLIAQANIIVYSYHYLLDPKIANVVSKELTKTAVVVFDEAHNID 227
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+T++ +T+ + R+ + I K +DA +L+ EYNRLV GL G
Sbjct: 228 NVCIDSMSVKIHRRTIDKSTQAIQRLEKNIAEIKESDANKLKEEYNRLVAGLREAGIARE 287
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP +IL E++PGNIR AEHF+ L+R V+YL+ RL ++V +E P SF+
Sbjct: 288 TDLILANPVLPEEILTESIPGNIRNAEHFISFLKRFVEYLKTRLRVQHVVQESPASFLKD 347
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLEI D +F + + ATLV TYT+GF+IIIEP
Sbjct: 348 VYGKVCIERKPLRFCAERLSSLLRTLEIADHTDFTSLVLVTHLATLVSTYTKGFTIIIEP 407
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P +P+P+L SC D+S+A+KPVFDRFQSVVITSGTLSP+D+YP++L+FHPV+ S
Sbjct: 408 FDDKAPTVPNPILHFSCLDSSIAMKPVFDRFQSVVITSGTLSPLDMYPKILDFHPVIMAS 467
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++++G+DQ+ +S++F+ R D V RNYG+LLVE+ S+VPDG+VCFF
Sbjct: 468 FTMTLARPCLLPMIVSKGNDQVAISSRFETREDVAVVRNYGQLLVEISSVVPDGVVCFFT 527
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D G+L + +HKL+FIETQD ET+LAL NY KAC+ GRGAV SVA
Sbjct: 528 SYLYLESVVASWYDQGVLNNLQKHKLLFIETQDAAETSLALLNYIKACESGRGAVLLSVA 587
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD H GR V+MFG+P+ YT S+
Sbjct: 588 RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSR 618
>gi|328871712|gb|EGG20082.1| transcription factor IIH component [Dictyostelium fasciculatum]
Length = 791
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/632 (53%), Positives = 460/632 (72%), Gaps = 9/632 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F L+D+ VYFPY IYPEQY+YML LKR+LD G C+LEMP+GTGKT++LL+LI+SY
Sbjct: 1 MKFYLDDLLVYFPYAFIYPEQYNYMLHLKRSLDNGGPCMLEMPSGTGKTVSLLALISSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG-PAAKILAIGLSSRKNLCVNS 119
+ P VKLIYC+RTV E+E+ + E + + Y+ LG A K L + +SSR+NLCV+
Sbjct: 61 VKNPN--VKLIYCSRTVPEIEQAVEEARKVLAYRNAELGDKAPKTLCMAMSSRRNLCVHP 118
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
RV + +VD+ CR T+ W+R +NP + C F EN+E + +L GVY + D
Sbjct: 119 RVSSEREGKTVDSLCRDLTSPWIR----DNPQADKCSFNENFE-SNGQEILLEGVYNIGD 173
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L+ FG + CPYFL+R ++ FAN+V++SYQY+LDPK+A +I+ S+VVFDEAHNI
Sbjct: 174 LKEFGLKNQMCPYFLSRRIINFANIVIFSYQYMLDPKIASLITASFDSNSIVVFDEAHNI 233
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCI +LSV++ + LE +RN+++I +I++ KA D RL+ EY+RL+ GLA R
Sbjct: 234 DNVCINSLSVNIDNRILEAGSRNITKITGQIDKVKAIDEKRLKDEYSRLLGGLA-RTGAS 292
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
D +++P LP+D+++EAVPGNIR+AEH+L ++RR + YL RL ++ + E P++F+
Sbjct: 293 NRDELMTDPVLPADVIREAVPGNIRKAEHYLSLMRRFMDYLANRLRSQTLISESPMAFLQ 352
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
S+ I+ KTLRFC +RL SL+ TL+I+D ++F I I D ATL+GTY +GF IIIE
Sbjct: 353 SLYHTTSINAKTLRFCSQRLSSLLRTLQISDINQFSGIGVIADLATLIGTYNKGFLIIIE 412
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
PFD+R P+ DPV Q C DAS+ +KP+FD+F++VVITSGTLSP+D+Y ++LN P
Sbjct: 413 PFDQRSPNQFDPVFQFCCLDASIGMKPIFDKFKNVVITSGTLSPLDIYTKILNIRPTTVE 472
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
MSL RD ICP +LTRGSDQ+ VSTKFD+RSD V RNYG LLVEM SIVPDGI+CFF
Sbjct: 473 RLPMSLIRDSICPCILTRGSDQISVSTKFDVRSDTTVIRNYGSLLVEMSSIVPDGIICFF 532
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
SYSYM++I++ WN+ G+L +++ +KL+F+ET D E+ LAL NY+KACD GRGAV SV
Sbjct: 533 TSYSYMEQIVSVWNEMGLLNKVLSNKLIFVETSDPAESALALQNYKKACDNGRGAVLLSV 592
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ARGKV+EGIDFD HYGR VI++G+P+ T S+
Sbjct: 593 ARGKVSEGIDFDHHYGRCVILYGIPYINTESR 624
>gi|2058510|gb|AAB62733.1| RepD [Dictyostelium discoideum]
Length = 776
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/632 (53%), Positives = 457/632 (72%), Gaps = 9/632 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F +ED+ VYFPY IYPEQYSYM+ LKR+LD G C+LEMP+GTGKT++LLSLI+SY
Sbjct: 1 MKFYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNGGPCILEMPSGTGKTVSLLSLISSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA-KILAIGLSSRKNLCVNS 119
+ P +KLIYC+RTV E+E+ E + + Y+ +G + K L + +SSR+NLC+
Sbjct: 61 VKNPS--IKLIYCSRTVPEIEQATEEARRVLQYRNSEMGEESPKTLCMSMSSRRNLCIQP 118
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
RV + VDA CR+ T+SW R E+P E C+FFEN+E + +L GVY+L+D
Sbjct: 119 RVSEERDGKVVDALCRELTSSWNR----ESPTSEKCKFFENFE-SNGKEILLEGVYSLED 173
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L+ +G + CPYFL+RHM+ FAN+V++SYQYLLDPK+A +IS S+VVFDEAHNI
Sbjct: 174 LKEYGLKHQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSSFPSNSIVVFDEAHNI 233
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCI ALS+++ + L+ +++N+++IN++IE K D RL+ EY RLV GLA G+
Sbjct: 234 DNVCINALSINIDNKLLDTSSKNIAKINKQIEDIKKVDEKRLKDEYQRLVNGLARSGSTR 293
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
AD S+P LP+D+++EAVPGNIR+ F+ +LRR+V YL+ RL+++ + E P++F+
Sbjct: 294 -ADETTSDPVLPNDVIQEAVPGNIRKPSIFISLLRRVVDYLKSRLKSQMLLSESPLAFLQ 352
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
+ I +TLRFC RL SL+ TL I D ++F I I DFATLVGTY GF IIIE
Sbjct: 353 GLYHATQISSRTLRFCSSRLSSLLRTLRINDVNQFSGISLIADFATLVGTYNNGFLIIIE 412
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
P+ +R + D + Q C DAS+ +KP+FD+++SVVITSGTLSP+D+Y ++LNF P V
Sbjct: 413 PYYQRQNNTYDQIFQFCCLDASIGMKPIFDKYRSVVITSGTLSPLDIYTKMLNFRPTVVE 472
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
MSL R+CICP +LTRGSDQ+ +STKFD+RSD V RNYG LLVE+ +IVPDGI+CFF
Sbjct: 473 RLTMSLNRNCICPCILTRGSDQISISTKFDVRSDTAVVRNYGALLVEVSAIVPDGIICFF 532
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
SYSYM++I++ WN+ G+L I+ +KL+F+ET D E+ LAL NY+KACD GRGAV SV
Sbjct: 533 TSYSYMEQIVSVWNEMGLLNNILTNKLIFVETSDPAESALALQNYKKACDSGRGAVLLSV 592
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ARGKV+EGIDFD YGR VI++G+P+ T SK
Sbjct: 593 ARGKVSEGIDFDNQYGRCVILYGIPYINTESK 624
>gi|323456743|gb|EGB12609.1| hypothetical protein AURANDRAFT_51952 [Aureococcus anophagefferens]
Length = 760
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/633 (54%), Positives = 465/633 (73%), Gaps = 8/633 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F+L+++ V+FPYD +YPEQ++Y+ ELK+ALDA+GH LLEMPTGTGKT LL+LIT+Y
Sbjct: 1 MRFQLDELDVFFPYDALYPEQFTYICELKKALDAEGHALLEMPTGTGKTACLLTLITAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK---ILAIGLSSRKNLCV 117
+ PE KLIYCTRTV EMEK LAELK L Y+ G A LA+ LSSR+N+CV
Sbjct: 61 YAHPEMG-KLIYCTRTVPEMEKCLAELKRLRAYRDAQRGVGASKAPFLALCLSSRRNMCV 119
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
+ RV+ +RD VD CRK TASW R+ + E C FFE +++A + A +P GVY +
Sbjct: 120 HERVVRDADRDRVDVECRKMTASWARS----RDDAEKCPFFEAWDEAGTEAEVPDGVYDV 175
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
DLR GK +GWCPYFLARH + ANV+VY+YQY+LDPKVAG++S+E++ ESVVVFDE H
Sbjct: 176 DDLRVLGKAKGWCPYFLARHAIAHANVIVYNYQYMLDPKVAGLVSRELEAESVVVFDEGH 235
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGN 297
NIDN+CIEALSV + + L+ A R ++R+ + ++ +A+DAGR+RAEY+RLV GL G+
Sbjct: 236 NIDNICIEALSVELDARRLDQAQRCVARLARSVDALRASDAGRVRAEYDRLVSGLRAAGS 295
Query: 298 LPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
LP + ++P LP D+L EAVPGN+R+AEHFL +LR LV +L+ +L V E P +F
Sbjct: 296 LPGDELGGASPVLPQDVLDEAVPGNVRKAEHFLRLLRVLVLHLKKKLAGTRVAVESPAAF 355
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + G+D K L+F + RLH L+ T+E ++ + + +FA++V TY GFS++
Sbjct: 356 LLGLQQATGLDAKPLKFFHTRLHQLLRTVEAAGLEDSAALGDVANFASIVSTYDDGFSVV 415
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
+P +P L L+C DASLA+KPV +RF+SVVITSGTLSP++LYP+LLNF PVV
Sbjct: 416 ADPTSRGPSGLPQARLDLACLDASLAIKPVLERFRSVVITSGTLSPLELYPKLLNFSPVV 475
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
S +MS+ R CI P+V+T+G+DQ PVST+F+ R D V RN+G+LL + VPDG+V
Sbjct: 476 RESLQMSIFRPCILPLVVTKGADQQPVSTRFESRDDASVVRNFGQLLAGLCGDVPDGMVV 535
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SYSYM+ + TW++ G+L+++ +HKL+F+ET+DVVETT+ALDN+R+ACD GRGAVF
Sbjct: 536 FFPSYSYMERTVTTWDELGVLRKVAEHKLLFVETKDVVETTIALDNFRRACDTGRGAVFL 595
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
S+ARGKVAEGIDFDRHYGR V+ GVPFQYT S
Sbjct: 596 SIARGKVAEGIDFDRHYGRCVLNVGVPFQYTQS 628
>gi|330841374|ref|XP_003292674.1| hypothetical protein DICPUDRAFT_50564 [Dictyostelium purpureum]
gi|325077069|gb|EGC30807.1| hypothetical protein DICPUDRAFT_50564 [Dictyostelium purpureum]
Length = 788
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/632 (52%), Positives = 456/632 (72%), Gaps = 9/632 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ VYFPY YPEQY YM+ LK++LD G C+LEMP+GTGKT++LL+LI+SY
Sbjct: 1 MKFFIDDLAVYFPYHYCYPEQYQYMVSLKKSLDEGGPCILEMPSGTGKTVSLLALISSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA-KILAIGLSSRKNLCVNS 119
L P VKL+YC+RTV E+E+ E + + NY+ LG A K L I +SSR+NLC++
Sbjct: 61 LVNP--TVKLLYCSRTVPEIEQATEEARRVLNYRNSQLGEKAPKTLCISMSSRRNLCIHP 118
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
RV VD+ CR+ T+ W R ENPN E C+FFEN+E +L GVY+L+D
Sbjct: 119 RVSEEREGKIVDSLCRELTSPWNR----ENPNSERCKFFENFEDKGKE-ILLEGVYSLED 173
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L+ +G + CPYFL RH++ FAN+V++SYQYLLDPK+A ++S S+VVFDEAHNI
Sbjct: 174 LKEYGLKNQMCPYFLDRHVLNFANIVIFSYQYLLDPKIASLVSSSFATNSIVVFDEAHNI 233
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCI ALSV++ + L+ + +N+++IN++IE K D RL+ EY+RLV+GLA G
Sbjct: 234 DNVCINALSVNLDNKILDASLKNVTKINKQIEEIKKVDEKRLKEEYSRLVQGLARSGTNR 293
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
+ ++P LP+D+++EAVPGNIR+AEHF+ +++R++ YL+ RL+++ V E P++F+
Sbjct: 294 TEEVS-ADPVLPNDVIQEAVPGNIRKAEHFMSLIKRVIDYLKSRLKSQMVISESPMAFLQ 352
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
+ I +TLRFC RL SL+ TL+I D + F I I DFATLVGTY GF IIIE
Sbjct: 353 GLYHATSITSRTLRFCSARLSSLLRTLKINDINAFSGISLIADFATLVGTYNNGFLIIIE 412
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
P+ +R + D + Q C DAS+ +KP+FDRF+SV+ITSGTLSP+D+Y ++LNF P V
Sbjct: 413 PYYQRQNNTYDQIFQFCCLDASIGMKPIFDRFRSVIITSGTLSPLDIYTKMLNFRPKVIE 472
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
MSL R+CICP +LTRGSDQ+ +STKFD+RSD V RNYG LLVE+ +IVPDGI+CFF
Sbjct: 473 KLSMSLNRNCICPCILTRGSDQISISTKFDVRSDTAVVRNYGSLLVEVSAIVPDGIICFF 532
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
SYSYM++I++ WN+ G+L I+ +KL+F+ET D E+ LAL NY+KACD GRGAV SV
Sbjct: 533 TSYSYMEQIVSVWNEMGLLNNILTNKLIFVETSDPAESALALQNYKKACDSGRGAVLLSV 592
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ARGK++EGIDFD YGR VI++G+P+ T SK
Sbjct: 593 ARGKISEGIDFDNQYGRCVILYGIPYINTESK 624
>gi|312370938|gb|EFR19235.1| hypothetical protein AND_22844 [Anopheles darlingi]
Length = 807
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/651 (51%), Positives = 452/651 (69%), Gaps = 24/651 (3%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
++ + VYFPY+ IYPEQY+YMLELKR DAKGHCLLEMP+GTGKT LLSL +Y+L P
Sbjct: 3 VDGLLVYFPYEYIYPEQYAYMLELKRTFDAKGHCLLEMPSGTGKTTTLLSLTVAYILENP 62
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
KLIYC+RTV E+EK +AELK L NY + G I + LSSRKN+C++ V
Sbjct: 63 HIVRKLIYCSRTVPEIEKVIAELKHLMNYYEKQTGTMPNITGLVLSSRKNMCIHPEVSRE 122
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFG 184
VDA C TAS+VR AA + C+++E ++ ++LPPGVY++ DL+ FG
Sbjct: 123 REGKIVDARCYGMTASYVRERAAHDETAPVCQYYEGFQAEGKESMLPPGVYSIDDLKEFG 182
Query: 185 KQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCI 244
+++ WCPYFL+R + A+VVVYSY YLLDPKVA ++SKE+ +ESVVV DEAHNIDNVC+
Sbjct: 183 RERNWCPYFLSRFAINQAHVVVYSYYYLLDPKVAEVVSKELTRESVVVCDEAHNIDNVCV 242
Query: 245 EALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAW 304
+++SV + ++ +E +T + + Q+I K D RL EY RLV+GL D
Sbjct: 243 DSMSVKINKRLIERSTTGIHNLEQKISELKEDDKRRLNDEYTRLVQGLKDASFARETDMV 302
Query: 305 LSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAH 364
++NP LP++IL+E VPGNIR A+HFL L+R ++Y++ RL ++V +E P F+ +
Sbjct: 303 VANPVLPNEILREVVPGNIRNADHFLSFLKRFIEYIKSRLRVQHVVQESPAGFLRDVQRQ 362
Query: 365 AGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDER 424
I++K LRFC +RL SL+ TLEITD E+ + I FATLV TYT+GF+IIIEPFD++
Sbjct: 363 VCIERKPLRFCADRLQSLLRTLEITDLSEYGPLSVITSFATLVSTYTKGFTIIIEPFDDK 422
Query: 425 MPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS 484
P +P+P+L SC D+S+A+KP+F RFQSVVITSGTLSP+D+YP++L+F PVV SF M+
Sbjct: 423 TPTVPNPILHFSCLDSSIAMKPIFQRFQSVVITSGTLSPMDMYPKILDFEPVVMSSFTMT 482
Query: 485 LTRDCICPMV------------------------LTRGSDQLPVSTKFDMRSDPGVARNY 520
L R C+ PMV + RG+DQ+ +S++F+ R D V RNY
Sbjct: 483 LARPCLLPMVGSFHLLRYSVLVLTINCICSPHQIVARGNDQVAISSRFETREDTAVTRNY 542
Query: 521 GKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA 580
G+LLVE VPDGIVCFF SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ A
Sbjct: 543 GQLLVETAKTVPDGIVCFFTSYLYLESVVASWYDQGIIDTLLRYKLLFIETQDNAETSYA 602
Query: 581 LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
L NY KAC+CGRGAV +VARGKV+EG+DFD H GR V+MFG+P+ YT S+
Sbjct: 603 LMNYVKACECGRGAVLLAVARGKVSEGVDFDHHLGRAVLMFGIPYVYTQSR 653
>gi|449664165|ref|XP_002163452.2| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit-like [Hydra magnipapillata]
Length = 759
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/631 (51%), Positives = 448/631 (70%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + V FP+D IYPEQYSYMLELKR LDAKGHCLLEMP+GTGKT++L+SLI +Y+
Sbjct: 1 MKLNIDGLLVLFPHDFIYPEQYSYMLELKRTLDAKGHCLLEMPSGTGKTVSLISLIVAYI 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+P + K +YC+RTV E+EK LL + + G K++ + LSSRKNLC++
Sbjct: 61 KERPHHLSKFVYCSRTVPEIEKVYNFXXLLIEFYKKETGQDLKMVGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VD C TAS+VR + C+F+EN++ LP G+Y L+DL
Sbjct: 121 VKNLKDGKQVDGKCHTLTASFVRTRYQADKQTPVCQFYENFDSFGREEPLPSGIYNLEDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G++ G CPYF+ARH + AN+VVYSY YLLDPK+A ++SK K S VVFDEAHNID
Sbjct: 181 KQYGEEIGCCPYFMARHAISLANIVVYSYHYLLDPKIADLVSKSFPKSSAVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI++++V + R+TL+ N+ ++ + ++R K TDA +L EY RLV+GL
Sbjct: 241 NVCIDSMTVHINRRTLDKCHSNIDKLAEHVQRIKMTDAKKLNGEYERLVQGLREAQEARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +L NP LP +L+EAVPGNIR+AEHF+ +RR V+YL+ RL ++V E P SF+
Sbjct: 301 TDQYLGNPVLPDAVLEEAVPGNIRQAEHFIAFMRRFVEYLKTRLRIQHVVSETPPSFLQH 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I I++K LRFC ERL SL+ TLE+ D ++ + + +FATLV TY++GF +IIEP
Sbjct: 361 IHQQVCIERKPLRFCSERLRSLLNTLELPDITDYSGLSLVANFATLVSTYSKGFVLIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P IP+P++ C DAS+A+KPVF+RFQSVVITSGTLSP+D+YP+LL+F PV +
Sbjct: 421 FDDQTPTIPNPIIHFCCLDASVAIKPVFERFQSVVITSGTLSPVDMYPKLLDFQPVNMST 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ P++ ++G+DQ+ +S+ F R D V RNYG LLVEM + VPDGI CFFV
Sbjct: 481 FTMTLARQCVLPIICSKGNDQVAISSSFQTRDDMAVIRNYGNLLVEMSASVPDGIACFFV 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +++ W+D GI+ I ++KL+FIETQD ET LAL NY+KAC+ GRGA+ SVA
Sbjct: 541 SYLYMETVVSIWHDQGIISNIQKNKLLFIETQDGPETALALYNYQKACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR VIMFG+P+ YT S+
Sbjct: 601 RGKVSEGIDFDHHYGRAVIMFGIPYVYTQSR 631
>gi|167536176|ref|XP_001749760.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771687|gb|EDQ85349.1| predicted protein [Monosiga brevicollis MX1]
Length = 798
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/630 (53%), Positives = 456/630 (72%), Gaps = 2/630 (0%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL 61
+F ++D+ V+FPYD IYPEQY YM E+KRALDAKGH LLEMP+GTGKT++LLSLI SY L
Sbjct: 22 MFMIDDLQVFFPYDLIYPEQYEYMQEIKRALDAKGHALLEMPSGTGKTVSLLSLIVSYQL 81
Query: 62 SKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV 121
P K IYC+RTV E+EK L ELK + Y ++ +G L +GLSSR+N+C++ V
Sbjct: 82 GYPGRLGKFIYCSRTVPEIEKVLGELKRVIAYMSKEMGRNLDYLGLGLSSRRNMCIHPDV 141
Query: 122 LAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLR 181
VD+ CR+ TAS+VR A+ ++ C +F +E A LP GVY L+DL+
Sbjct: 142 SQERTGAIVDSRCRQLTASFVREKTADGKSL--CTYFNGFEAHGRDAPLPAGVYNLEDLK 199
Query: 182 AFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
FG+Q+ +CPYFLAR+ + AN+VVYSY YLLDPK+A ++S+EM ++SVVVFDEAHNIDN
Sbjct: 200 VFGEQRKFCPYFLARYAITHANIVVYSYHYLLDPKIAELVSREMGRDSVVVFDEAHNIDN 259
Query: 242 VCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIA 301
VCIE++SV+++++ L+ AT NL + +++ K ++ +LR EY LV+GL
Sbjct: 260 VCIESMSVTIQQRHLDRATANLRSLKNKVKEMKESNTEQLRHEYQNLVQGLRDNRANQAT 319
Query: 302 DAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASI 361
D+ ++NP LP D+L+EAVPGNIR+AEHF+ + R V+YL+ RL + V E P +F+ +
Sbjct: 320 DSVMANPVLPHDVLEEAVPGNIRKAEHFVAFMDRFVEYLKTRLRVKQVLSEPPAAFLEHV 379
Query: 362 TAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPF 421
I+ K LRFC ERL SL+ TLE+ D++ I I FATLV TY++GFS+IIEP+
Sbjct: 380 FQSVCIEAKPLRFCSERLGSLLQTLELARIDDYGPITLIASFATLVSTYSKGFSLIIEPY 439
Query: 422 DERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSF 481
D+R P +PDPVL+ +C DASLAVKPVFDRFQSV+ITSGTLSP+D+YP++LNF PV SF
Sbjct: 440 DDRAPSVPDPVLRFTCMDASLAVKPVFDRFQSVIITSGTLSPLDMYPKILNFRPVTMCSF 499
Query: 482 KMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVS 541
M+L+R + P+V+TR +DQ P+ST+++ R V R YG LL+++ S VPDG+VCFFVS
Sbjct: 500 DMTLSRTSLLPIVVTRSADQTPLSTRYEDREQSAVKRGYGHLLLDICSAVPDGVVCFFVS 559
Query: 542 YSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVAR 601
Y Y++ ++TW D GI+ +I KLVF+ETQD ET+ ALD+++KAC GRGAV SVAR
Sbjct: 560 YEYLESAVSTWIDQGIMTQIQAKKLVFVETQDGAETSQALDSFQKACANGRGAVLLSVAR 619
Query: 602 GKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GKV+EGIDFD H GR V+M G+P+ YT S+
Sbjct: 620 GKVSEGIDFDHHLGRAVVMMGIPYVYTQSR 649
>gi|41055526|ref|NP_957220.1| TFIIH basal transcription factor complex helicase subunit [Danio
rerio]
gi|29437217|gb|AAH49410.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Danio rerio]
Length = 643
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/616 (54%), Positives = 445/616 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQYSYMLELKR LDAKGH +LEMP+GTGKTI+LLSLI +Y
Sbjct: 1 MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KL+YC+RTV E+EK + EL+ L +Y ++ G LA+ LSSRKNLC++
Sbjct: 61 KTYPLEVTKLVYCSRTVPEIEKVVEELRKLMDYYSKQTGVKNDFLALALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + VD C TAS++RA NPN C+F+E ++ +PPG+Y L DL
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQHQSNPNQPVCQFYEEFDNVGRQVPIPPGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ FG+++GWCPYFLAR+ + AN+VVYSY YLLDPK+A ++SKE+ K+SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ N+ + I R K TDA +LR EY RLVEGL
Sbjct: 241 NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +LSNP LP +IL+EAVPG+IR AEHF+ ++R ++YL+ RL +V +E F+
Sbjct: 301 TDIYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I ID+K LRFC ERL SL+ TLEI D +F I I FATLV TY++GF+IIIEP
Sbjct: 361 IFEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSPITLISHFATLVSTYSKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+++ P I +PVL SC D S+A+KPVF RFQ+V+ITSGTLSP+D+YPR+L+F PV S
Sbjct: 421 FEDKTPTIANPVLHFSCMDPSIAIKPVFGRFQTVIITSGTLSPLDIYPRILDFRPVTMAS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CP+++ RG+DQ+ +++KF+ R D V RNYG LL+EM +IVPDGIV FF
Sbjct: 481 FTMTLARTCLCPLIVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ I+A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYMYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGR 616
RGKV+EGIDF H+ R
Sbjct: 601 RGKVSEGIDFVHHHVR 616
>gi|358057423|dbj|GAA96772.1| hypothetical protein E5Q_03443 [Mixia osmundae IAM 14324]
Length = 797
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/632 (53%), Positives = 453/632 (71%), Gaps = 2/632 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++ + V FPYD IYPEQY+Y+ +LKR LDA G+C+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDQLPVIFPYDRIYPEQYAYVCDLKRTLDAGGNCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE KL+YC+RTV E+EK LAELK L Y+ +A+GLSSRKNLC++
Sbjct: 61 QHYPERR-KLVYCSRTVPEIEKALAELKRLMEYRRAAGCNDDGFMALGLSSRKNLCIHPT 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPGVYTLQD 179
+ + DA CR T++WV +P ++E CEF EN + LPP VYTL+D
Sbjct: 120 ISREKKGKVADAKCRDLTSAWVCEKGRADPGSVELCEFHENLGQLEPGTQLPPAVYTLED 179
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
++A+G+QQG CPYF R M+ A+VV+YS+ YLLDPKVA +SKEM K+++VVFDEAHNI
Sbjct: 180 VKAYGEQQGICPYFAVRRMLVHASVVIYSFHYLLDPKVAEQVSKEMSKDAIVVFDEAHNI 239
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCIE+LS+ + R L+ A R+++ + +I+ + TDA +L+ EY RLVEGL
Sbjct: 240 DNVCIESLSIDLTRPMLDSAARSVTALTDKIKEIRQTDATKLQDEYARLVEGLQGAEADQ 299
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
+A++ NP LP DIL EAVPGNIRRAEHF+ L R V+YL+ R+ +V E P SF+
Sbjct: 300 DENAFMGNPVLPDDILNEAVPGNIRRAEHFVAFLARFVEYLKTRMRVLHVVAEKPASFLQ 359
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
+ I++K LRFC ERL SL+ TLE+T DEF + + FATLV TY +GF +I+E
Sbjct: 360 HLKDITFIEKKPLRFCAERLTSLVRTLELTRIDEFSALSKVASFATLVATYDKGFLLILE 419
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
PF+ +P+P+ L C DASLA+KPVFDRF SVVITSGT+SP+++YP++L F V
Sbjct: 420 PFETENATVPNPIFHLCCLDASLAIKPVFDRFSSVVITSGTISPLEMYPKMLQFTATVQE 479
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
S+ M+LTR+C P+V+TRGSDQ+ +S++F++R+DP V RN+G +L+E VPDG+VCFF
Sbjct: 480 SYAMTLTRNCFLPLVITRGSDQVNISSRFEVRNDPAVVRNFGTILIEYAKAVPDGMVCFF 539
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
SY YM+ I+A W+D GIL E +HKL+F+ET D ET++AL+NYR+ACD GRGAV SV
Sbjct: 540 PSYLYMESIVAAWHDMGILNEAWKHKLIFVETPDAAETSVALENYRRACDNGRGAVLLSV 599
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ARGKV+EGIDFD HYGR VIMFG+P+QYT S+
Sbjct: 600 ARGKVSEGIDFDHHYGRCVIMFGIPYQYTESR 631
>gi|308810260|ref|XP_003082439.1| DNA repair/transcription factor protein (ISS) [Ostreococcus tauri]
gi|116060907|emb|CAL57385.1| DNA repair/transcription factor protein (ISS) [Ostreococcus tauri]
Length = 792
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/681 (54%), Positives = 466/681 (68%), Gaps = 79/681 (11%)
Query: 1 MIFKLED-----VTVYFPYDNIYPEQYS--------------------YMLELKRALDAK 35
M F ++D + V+FPYD++YPEQ + YM E+KRALDA+
Sbjct: 1 MRFTIDDGGSAPIEVFFPYDSVYPEQVALARTRRLTRSARVRSIAKVAYMREMKRALDAR 60
Query: 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQT 95
GH +EMPTGTGKTI +LS+ SY L+ PE K+IYCTRTV EMEK L E+K L Y
Sbjct: 61 GHGAVEMPTGTGKTITVLSMCVSYQLAHPEVG-KIIYCTRTVPEMEKVLEEMKALQAYIE 119
Query: 96 RHLGP-AAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR----------- 143
+ LG A++L++GLSSRKN+CVN V +R+SVD CR+ TASWVR
Sbjct: 120 KELGAETARMLSLGLSSRKNMCVNPAVADEGSRESVDGRCRRLTASWVRERRLERQARDA 179
Query: 144 --ALAAENP------NIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLA 195
+AAE+ + C++FE +E A AVLPPGVYTL DLR FG+ + WCPYFLA
Sbjct: 180 GRTVAAEDGEGDNEGGVSCCDWFEEFETAGEKAVLPPGVYTLHDLRQFGRAKKWCPYFLA 239
Query: 196 RHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQT 255
R+M+ FANV+VY+YQY+LDPKVA ++S ++KE VVVFDEAHNIDNVCIEALSV++R+QT
Sbjct: 240 RNMISFANVIVYNYQYMLDPKVASLVSSALEKECVVVFDEAHNIDNVCIEALSVNLRQQT 299
Query: 256 LEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADA--WLSNPALPSD 313
LE A R+++ +N I++ K TD RLR EY RLV GLA +G L L NP +P D
Sbjct: 300 LENAGRSITSLNARIDKAKQTDERRLRQEYERLVNGLAQQGVLARGGGEDMLMNPVIPDD 359
Query: 314 ILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLR 373
IL+EAVPGNIRRAEHF+ VL+R V+YL+ RL++ A+AGID KTL+
Sbjct: 360 ILREAVPGNIRRAEHFVAVLKRFVEYLKFRLQS-----------TQHCAANAGIDGKTLK 408
Query: 374 FCYERLHSLMLTLEITDTDEFLHIQTICDFATLV---GTYTRGFSIIIEPFDERMPHIPD 430
L S ++E +Q I L G +GF
Sbjct: 409 VL---LRSPDESVEDARGGRHGRVQRIVVGGELCCARGDIFQGFR--------------S 451
Query: 431 PVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
L+C DASLA+KPVF+RFQSV ITSGTLSPIDLYP+LL F+PV ++S +M+LTR+C+
Sbjct: 452 HTRALACLDASLAIKPVFERFQSVFITSGTLSPIDLYPKLLGFNPVCAKSLEMTLTRECL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
CPMV+TRG+DQ VSTKFD+R DP V +NYG++LV + VPDGIV FFVSYSYM+ I++
Sbjct: 512 CPMVITRGADQQAVSTKFDVRDDPNVIQNYGRILVGLAQTVPDGIVAFFVSYSYMENIVS 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610
W+++GIL+EIMQHKLVFIET DVVET+LALDNYR+AC+CGRGA+F SVARGKVAEGIDF
Sbjct: 572 KWHETGILREIMQHKLVFIETTDVVETSLALDNYRRACNCGRGAIFLSVARGKVAEGIDF 631
Query: 611 DRHYGRLVIMFGVPFQYTLSK 631
DRHYGR V+M+GVP+QYTLS+
Sbjct: 632 DRHYGRAVVMYGVPYQYTLSR 652
>gi|91079234|ref|XP_970844.1| PREDICTED: similar to Xeroderma pigmentosum D CG9433-PA [Tribolium
castaneum]
gi|270003570|gb|EFA00018.1| hypothetical protein TcasGA2_TC002825 [Tribolium castaneum]
Length = 759
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/631 (51%), Positives = 452/631 (71%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQY+YM ELKRALDAKGHCLLEMP+GTGKT +LSL+ +Y+
Sbjct: 1 MKLNVDGLIVYFPYDYIYPEQYAYMCELKRALDAKGHCLLEMPSGTGKTTTILSLVVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L P + KLIYC+RTV E+EK + ELK L Y + G +L + LSSRKNLC++
Sbjct: 61 LEHPHDVRKLIYCSRTVPEIEKVMEELKKLLEYYEKLDGEYPHLLGLVLSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS++R + C+++E + + +P GVY++ DL
Sbjct: 121 VSTEREGKIVDGKCHALTASYIRERHNYDDTTPICQYYEGFALDGKESTMPFGVYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ + WCPYFL+R ++ +AN+VVYSY YLLDPK+A ++SKE+ +ESVV+FDEAHNID
Sbjct: 181 KQYGRDRNWCPYFLSRFVISYANIVVYSYHYLLDPKIAEVVSKELTRESVVIFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + ++ ++ A+ N+ + + + + D +L+ EY RLVEGL
Sbjct: 241 NVCIDSMSVKINKRIIDRASANIQLLERTVAEMREDDHKKLQEEYQRLVEGLRDASVARD 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP IL+EAVPGNIR AEHF+ L+R ++YL+ RL ++V +E P F+
Sbjct: 301 TDVILANPVLPDAILQEAVPGNIRNAEHFVSFLKRFLEYLKTRLRVQHVVQESPAGFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + I++K LRFC ERL SL+ TLEI+D +F + + ATLV TYT+GF+II+EP
Sbjct: 361 VQSKVCIERKPLRFCAERLASLLRTLEISDLTDFSPVILVTHLATLVATYTKGFTIIVEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P+L SC D+S+A+KPVFDRFQ+VVITSGTLSP+D+YP++LNFHPV+ S
Sbjct: 421 FDDKTPTVSNPILHFSCLDSSIAIKPVFDRFQTVVITSGTLSPLDMYPKILNFHPVIMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++++G+DQ+ +S+KF+ R D V RNYG+LLVE+ + VPDGIVCFF
Sbjct: 481 FTMTLARPCLLPMIVSKGNDQVAISSKFETREDNAVIRNYGQLLVEIAANVPDGIVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D G++ + ++KL+FIETQD ET+ AL Y KAC+ GRGAV SVA
Sbjct: 541 SYLYLESVVASWYDQGVIDSLQRYKLLFIETQDSAETSFALMYYIKACESGRGAVLLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD H GR V+MFG+P+ YT S+
Sbjct: 601 RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSR 631
>gi|428170235|gb|EKX39162.1| ERCC2/XPD/Rad3 nucleotide excision repair [Guillardia theta
CCMP2712]
Length = 703
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/626 (54%), Positives = 465/626 (74%), Gaps = 20/626 (3%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLI 71
PY + PE+ M KR D GTGKTI LLSLITSY L+ PE P KL+
Sbjct: 1 MPYMGLLPEKLPSMTS-KRDAD-----------GTGKTITLLSLITSYQLAHPEVP-KLV 47
Query: 72 YCTRTVHEMEKTLAELKLLHNYQTRHLGP-AAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
YCTRTV EMEK L EL+ L Y+T LG KILA+GLSSR+N+C++ + +R +V
Sbjct: 48 YCTRTVPEMEKALEELRELIKYRTSILGAEGGKILALGLSSRRNMCIHPEISQESDRIAV 107
Query: 131 DAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWC 190
DA CR TASWVR ++ NI C FFE ++K S ++L PGVYTL DLR GK++GWC
Sbjct: 108 DAQCRSITASWVRQRKEQDNNINVCSFFEGFDKHGSQSLLQPGVYTLDDLRNMGKEKGWC 167
Query: 191 PYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVS 250
PYF ARHM+++ANV+VY+Y Y++DPK++ ++S++++KES++VFDEAHNIDNVCIEALSV+
Sbjct: 168 PYFTARHMIRYANVIVYNYAYVIDPKISLLVSRDVEKESILVFDEAHNIDNVCIEALSVN 227
Query: 251 VRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL---PIADAWLSN 307
+ ++ L+GA+RN++ +++ IE+ K +A +LR EY RLV GL G + P++D + +
Sbjct: 228 INKKNLDGASRNIATLSRAIEKSKEQNAEQLRQEYERLVAGLQGSGAITGAPLSDQFGGD 287
Query: 308 PALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETEN-VEKEGPVSFVASITAHAG 366
P ++ L++ +PG+I +A +F+ +R++V +L+ RL N VE V FV S+
Sbjct: 288 PVGFANELEQLIPGDIIQAHNFISFMRKVVDFLKERLRVSNTVEMTDNVPFVRSLMQKMQ 347
Query: 367 IDQ-KTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERM 425
+ + K+LRF +RL SL+ TLE+ D D + + + DF LV TYT+GF IIIEPFDER+
Sbjct: 348 LQEPKSLRFSAQRLKSLLHTLEVVDVDTYTPLSLVADFCALVSTYTQGFKIIIEPFDERL 407
Query: 426 PHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSL 485
P++PDP+L L+C DASLA+KPVF+ FQSVVITSGTLSPIDLYP++LNF P ++++F+MSL
Sbjct: 408 PNVPDPILHLACLDASLAIKPVFEHFQSVVITSGTLSPIDLYPKILNFVP-LTKTFEMSL 466
Query: 486 TRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYM 545
+R CICPM++TRGSDQ+P++ ++ RSD + NYG+L+VE+ S VPDG+V FF SY YM
Sbjct: 467 SRQCICPMIVTRGSDQMPLNARYQSRSDRSIIHNYGRLIVELSSCVPDGMVVFFPSYRYM 526
Query: 546 DEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVA 605
+E++ W + +L++I +KL+FIETQDVVETTLAL+N+++ACDCGRGAVFFSVARGKVA
Sbjct: 527 EEVVGAWANGKVLEQITTYKLLFIETQDVVETTLALENFKRACDCGRGAVFFSVARGKVA 586
Query: 606 EGIDFDRHYGRLVIMFGVPFQYTLSK 631
EGIDFD+HYGR VI+ G+PFQYTLSK
Sbjct: 587 EGIDFDKHYGRAVIIIGIPFQYTLSK 612
>gi|344269323|ref|XP_003406502.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Loxodonta africana]
Length = 845
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/634 (52%), Positives = 454/634 (71%), Gaps = 3/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 83 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 142
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 143 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 202
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA ++ ++ C F+E ++ L G+Y L DL
Sbjct: 203 VTPLRFGKDVDGKCHSLTASYVRAQYQQDSSLPHCSFYEEFDTHGRQVPLSAGIYNLDDL 262
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 263 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 322
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 323 NVCIDSMSVNITRRTLDRCQGNLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 382
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 383 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 442
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 443 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 502
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 503 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 562
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 563 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 622
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++ + GRG + S A
Sbjct: 623 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEGWEKGRGGIPVSSA 682
Query: 601 RGKVAEGIDF---DRHYGRLVIMFGVPFQYTLSK 631
RGK++EG +F HYGR VIMFGVP+ YT S+
Sbjct: 683 RGKMSEGNEFWEGVHHYGRAVIMFGVPYVYTQSR 716
>gi|194754721|ref|XP_001959643.1| GF11940 [Drosophila ananassae]
gi|190620941|gb|EDV36465.1| GF11940 [Drosophila ananassae]
Length = 770
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/631 (51%), Positives = 452/631 (71%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY+YMLELKR+LDAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE KLIYC+RTV E+EK +AEL+ L Y R+ + LSSRKN+C++
Sbjct: 61 VEYPETVRKLIYCSRTVPEIEKVIAELQNLMAYYERNCPNPPPFTGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +VD C TAS++R + C+++E + + LP GVY++ DL
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRDRHEMDSETPICQYYEGFTLEGKESTLPVGVYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ + WCPYFLAR+ + A++VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMTRESCVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+T+E +T L+++ + ++ + D RL EY R+V+GL
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP+D+L E VPGNIR A+HFL LRR ++Y++ RL +V +E P F+
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I++ I++K LRFC ERL SL+ TLEI+D E+ + I FATLV TYT+GF+III+
Sbjct: 361 ISSKICIERKPLRFCAERLSSLLRTLEISDMTEYGALTLITHFATLVSTYTKGFTIIID- 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
D++ P + +P+L SC D+S+A+ PVF RFQ+VVITSGTLSP+D+YP++L+F PVV S
Sbjct: 420 LDDKTPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSS 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++++G+DQ+ +S+KF+ R D V RNYG+LLVE+ VPDGIVCFF
Sbjct: 480 FTMTLARPCLLPMIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFT 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KACDCGRGAV +VA
Sbjct: 540 SYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR V+MFG+P+ YT S+
Sbjct: 600 RGKVSEGVDFDHHYGRAVLMFGIPYVYTQSR 630
>gi|395333451|gb|EJF65828.1| DNA repair helicase [Dichomitus squalens LYAD-421 SS1]
Length = 796
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/638 (52%), Positives = 456/638 (71%), Gaps = 10/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPYD IYPEQY+YM +LKR LDA GHCLLEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFFIDDLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCLLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ------TRHLGPAAKILAIGLSSRKN 114
P KLIYC+RTV E+EK L+EL+ L +Y+ IGL+SRKN
Sbjct: 61 QFYPTKR-KLIYCSRTVPEIEKALSELQRLMDYRRDCAETDEQREKEKNFYGIGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC++ V + VDA CR T S V ENP ++E C++ EN K ++PPG
Sbjct: 120 LCIHPEVSKEKKGKVVDARCRDLTNSAVCTKGRENPGSVELCDWHENLGKLEPGNLIPPG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++TL D+ G++ CPYFL R M+ F +V++YS+ YLLDPKVA +SKE+ K+++VVF
Sbjct: 180 IWTLADVLQHGRENKICPYFLVRRMMPFVDVIIYSFHYLLDPKVAEQVSKELTKDAIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ A R++ ++ +I+ K TDA +L+ EY +LVEGL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSAARSVVKLGDKIDEIKKTDASKLQDEYAKLVEGLQ 299
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
N DA++SNP LP D+LKEA+PGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 EASN--DEDAFVSNPVLPEDLLKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAET 357
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
P+SF+ + I+++ LRFC ERL SL+ TLE++ DE +Q + FATLV TY +G
Sbjct: 358 PLSFLQHLKDITYIERRPLRFCAERLQSLVRTLELSRLDELSSLQKVASFATLVATYEKG 417
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
F +I+EPF+ +P+P+ L+C D S+A+KPVF+RF SVVITSGTLSP+D+YP++L F
Sbjct: 418 FLLILEPFETDNATVPNPIFHLTCLDPSIAIKPVFERFSSVVITSGTLSPLDMYPKMLQF 477
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
PVV ++ M+LTR+ P+V+TRGSDQ+ +S++F++R+DP V RN+G +L+E IVPD
Sbjct: 478 TPVVQETYSMTLTRNSFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGSILIEYSKIVPD 537
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GIV FF SY YM+ I+A WND GIL E+ +HKL+F+ET D ET++AL+NYR+ACD GRG
Sbjct: 538 GIVAFFPSYLYMESIVAAWNDMGILNEVWKHKLIFVETPDANETSIALENYRRACDNGRG 597
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AV SVARGKV+EGIDFD +YGR VIMFGVP+QYT S+
Sbjct: 598 AVLLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTESR 635
>gi|389748846|gb|EIM90023.1| DNA repair helicase [Stereum hirsutum FP-91666 SS1]
Length = 802
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/638 (52%), Positives = 455/638 (71%), Gaps = 10/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPYD IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFFIDDLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK------ILAIGLSSRKN 114
P KLIYC+RTV E+EK LAEL+ L Y+ + + IGL+SRKN
Sbjct: 61 QFFPTKR-KLIYCSRTVPEIEKALAELRRLMEYRISQAETEEQRVKEQGFMGIGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC++ V + VDA CR T S NP +++ C+F E + ++PPG
Sbjct: 120 LCIHPEVSKEKKGKVVDARCRDMTNSAACQKGRANPGSVDLCDFHEKLGEREPGNLIPPG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++TL D+ +G+QQG CPYF R M+ F ++V+YS+ YLLDPKVA +SKEM K+S+VVF
Sbjct: 180 IWTLADVMDYGRQQGTCPYFTVRRMLPFVDIVIYSFHYLLDPKVAEQVSKEMSKDSIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ A R+++++ +I+ K TDA +L+ EY +LVEGL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSAARSVNKLGDKIDEIKKTDASKLQDEYAKLVEGL- 298
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
+ DA++SNP LP D+L EA+PGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 299 -QDAASDEDAFMSNPVLPEDLLNEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAET 357
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
P+SF+ + I+++ LRFC ERL SL+ TLEI DEF +Q + FATLV TY +G
Sbjct: 358 PLSFLQHLKDITYIERRPLRFCAERLQSLVKTLEINRLDEFSALQKVASFATLVSTYEKG 417
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
F +I+EPF+ +P+P+ +C D ++A+KPVF+RF SVVITSGT+SP+D+YP++L F
Sbjct: 418 FLLILEPFETDNATVPNPIFHFTCLDPAIAIKPVFERFSSVVITSGTISPLDMYPKMLQF 477
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
PVV ++ M+LTR+ P+V+TRGSDQ+ +S++F++R+DP V RN+G +LVE IVPD
Sbjct: 478 TPVVQETYAMTLTRNAFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGSILVEYSKIVPD 537
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GIV FF SY YM+ I+A WND GIL E+ +HKL+F+ET D ET++AL+NYR+ACD GRG
Sbjct: 538 GIVAFFPSYLYMESIVAAWNDMGILNEVWKHKLIFVETPDANETSIALENYRRACDNGRG 597
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AV SVARGKV+EGIDFD +YGR VIMFGVP+QYT S+
Sbjct: 598 AVLLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTESR 635
>gi|302681585|ref|XP_003030474.1| hypothetical protein SCHCODRAFT_77555 [Schizophyllum commune H4-8]
gi|300104165|gb|EFI95571.1| hypothetical protein SCHCODRAFT_77555 [Schizophyllum commune H4-8]
Length = 792
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/639 (52%), Positives = 455/639 (71%), Gaps = 9/639 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPYD IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFNIDDLPIVFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTR------HLGPAAKILAIGLSSRKN 114
P KLIYC+RTV E+EK LAELK L Y+ + +GL+SRKN
Sbjct: 61 QFYPTKR-KLIYCSRTVPEIEKALAELKRLMAYRIQCAETPEQRAKEEAFTGLGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC++ V + VDA CR T + V +P ++E CE+ EN + ++PPG
Sbjct: 120 LCIHPEVSKEKKGVVVDARCRDLTNAVVCEKGRADPGSVELCEWHENLGQREPGQLIPPG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++TL D+ +G+ CPYFL R M+ F +VV+YS+ YLLDPKVA +SKE+ K+++VVF
Sbjct: 180 IWTLADVLQYGRDNTICPYFLVRRMMPFVDVVIYSFHYLLDPKVADQVSKELSKDAIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ A R++ ++ ++IE K TDA +L+ EY RLVEGL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSAARSVGKLGEKIEEIKTTDAAKLQDEYARLVEGLQ 299
Query: 294 LRGNLPI-ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKE 352
+ P AD ++SNP LP D+L EAVPGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 EASDRPDDADGFMSNPLLPDDLLNEAVPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAE 359
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
P+SF+ + I+++ LRFC ERL SL+ TLE++ DE+ +Q + FATLV TY R
Sbjct: 360 TPLSFLQHLKDITYIERRPLRFCAERLQSLIRTLELSRLDEYSALQKVASFATLVSTYER 419
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
GF +I+EPF+ +P+P+ +C D SLA++PVF+RF SVVITSGT+SP+D+YP++L
Sbjct: 420 GFILILEPFETDNATVPNPIFHFACLDPSLAIQPVFERFSSVVITSGTISPLDMYPKMLQ 479
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
F PVV S+ M+LTR+ P+V+TRGSDQ+ +S++F++R+DP V RN+G +L+E IVP
Sbjct: 480 FTPVVQESYPMTLTRNSFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGSILIEYSKIVP 539
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR 592
DGIV FF SY YM+ I+A WND GIL E+ HKL+F+ET D ET++AL+NYR+ACD GR
Sbjct: 540 DGIVAFFPSYLYMESIVAAWNDMGILNEVWNHKLIFVETPDSNETSIALENYRRACDNGR 599
Query: 593 GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GAV SVARGKV+EGIDFD +YGR VIMFGVP+QYT S+
Sbjct: 600 GAVLLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTESR 638
>gi|296086736|emb|CBI32371.3| unnamed protein product [Vitis vinifera]
Length = 922
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/359 (91%), Positives = 347/359 (96%)
Query: 273 FKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHV 332
FKATDAGRLRAEYNRLVEGLA RGNLPI+D WL+NPALP DILKEAVPGNIRRAEHFL V
Sbjct: 437 FKATDAGRLRAEYNRLVEGLAQRGNLPISDTWLANPALPDDILKEAVPGNIRRAEHFLSV 496
Query: 333 LRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTD 392
LRRLVQYL GRLETENVEKEGPV+FVASI + AGIDQK L+FCY+RLHSLMLTLEITDTD
Sbjct: 497 LRRLVQYLHGRLETENVEKEGPVAFVASINSQAGIDQKMLKFCYDRLHSLMLTLEITDTD 556
Query: 393 EFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQ 452
EFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLA+KPVF+RFQ
Sbjct: 557 EFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAIKPVFERFQ 616
Query: 453 SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
SVVITSGTLSPIDLYPRLLNF+PVVSRSF MSLTR+CICPMVLTRGSDQLPVSTKFDMRS
Sbjct: 617 SVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRNCICPMVLTRGSDQLPVSTKFDMRS 676
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ 572
DPGV RNYG+LL+EMVS+VPDGIVCFFVSYSYMD I+ TWN+SGILKEIMQHKLVFIETQ
Sbjct: 677 DPGVVRNYGRLLLEMVSVVPDGIVCFFVSYSYMDGIVNTWNESGILKEIMQHKLVFIETQ 736
Query: 573 DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
DVVETTLALDNYR+ACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS+
Sbjct: 737 DVVETTLALDNYRRACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSR 795
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/270 (80%), Positives = 231/270 (85%), Gaps = 27/270 (10%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F++EDVTVYFPYDNIYPEQYSYM+ELKRALDAKGH LLEMPTGTGKTIALLSLITSY
Sbjct: 1 MKFQIEDVTVYFPYDNIYPEQYSYMVELKRALDAKGHALLEMPTGTGKTIALLSLITSYA 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
LSKP NP+KL+YCTRTVHEMEKTLAEL+LLH YQ RHLGPAA+ILA+GLSSRKNLC+N
Sbjct: 61 LSKPSNPIKLLYCTRTVHEMEKTLAELRLLHQYQLRHLGPAARILALGLSSRKNLCINPA 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V NPNI TC+FFENYEKAAS AVLPPGVYTLQDL
Sbjct: 121 V---------------------------NPNIPTCQFFENYEKAASEAVLPPGVYTLQDL 153
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
RAFG+ +GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ+ESVVVFDEAHNID
Sbjct: 154 RAFGRDKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDEAHNID 213
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEI 270
NVCIEALSVSVRRQTLEGATRNLS++ QEI
Sbjct: 214 NVCIEALSVSVRRQTLEGATRNLSKMAQEI 243
>gi|392595870|gb|EIW85193.1| DNA repair helicase [Coniophora puteana RWD-64-598 SS2]
Length = 787
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/638 (52%), Positives = 455/638 (71%), Gaps = 9/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ + FPYD IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFFIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTR------HLGPAAKILAIGLSSRKN 114
P N KLIYC+RTV E+EK LAELK L Y+ + +GL+SRKN
Sbjct: 61 QFYP-NKRKLIYCSRTVPEIEKALAELKRLMEYRIKCAETTEQKEKEENFRGLGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC++ V + VDA CR T S V A E+P ++E CE+ EN K +++ PG
Sbjct: 120 LCIHPEVAKEKKGKVVDARCRDLTNSAVCAKGREDPGSVELCEWHENLGKLEPGSLISPG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
V+TL D+ G+ G CPYF R M+ F +VV+YS+ YLLDPKVA +SKEM K+++VVF
Sbjct: 180 VHTLADVLEHGRANGTCPYFTVRRMMPFVDVVIYSFHYLLDPKVAEQVSKEMSKDAIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ A R++ ++ +IE K TDA +L+ EY RLVEGL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSAARSVVKLGDKIEEIKRTDAAKLQDEYARLVEGLQ 299
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
P D+++SNP LP D+L EA+PGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 -EPAAPEEDSFMSNPVLPEDLLSEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAET 358
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
P+SF+ + I+++ LRFC ERL S++ TLE++ DE+ +Q + FATLV TY +G
Sbjct: 359 PLSFLQHLKDITYIERRPLRFCAERLQSMIRTLELSRLDEYSSLQKVASFATLVATYEKG 418
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
F +I+EPF+ +P+P+ +C D SLA+KPVF+RF SVVITSGT+SP+D+YP++L F
Sbjct: 419 FLLILEPFETDSATVPNPMFHFTCLDPSLAIKPVFERFSSVVITSGTISPLDMYPKMLQF 478
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
PVV S+ M+L R+ P+V+TRGSDQ+ +S++F++R+DP V RN+G +L+E IVPD
Sbjct: 479 TPVVQESYSMTLARNTFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGSILIEYSKIVPD 538
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GIV FF SY YM+ I+A WND GIL E+ ++KL+F+ET D ET++AL+NYR+ACD GRG
Sbjct: 539 GIVAFFPSYLYMESIVAAWNDMGILTEVWKNKLIFVETPDANETSIALENYRRACDNGRG 598
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AV SVARGKV+EGIDFD +YGR VIMFGVP+QYT S+
Sbjct: 599 AVLLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTESR 636
>gi|343425212|emb|CBQ68748.1| probable RAD3-DNA helicase/ATPase [Sporisorium reilianum SRZ2]
Length = 847
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/666 (50%), Positives = 459/666 (68%), Gaps = 36/666 (5%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ V FPY IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFYIDELPVLFPYPKIYPEQYAYMTDLKRTLDANGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRH----------------------- 97
L P KLIYC+RTV E+EK LAELK L Y+ R+
Sbjct: 61 LFHPAKR-KLIYCSRTVPEIEKALAELKRLMEYRARYNVKEGEESEVLKNEAEGSNGPGE 119
Query: 98 -----------LGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
G ILA+GLSSRKNLC++ V VDA CR T+SW
Sbjct: 120 HNVEMKGKGKAGGQMEDILALGLSSRKNLCIHPDVSRERKGKVVDARCRDMTSSWACEKG 179
Query: 147 AENPN-IETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
++P +E C+F E K ++P GV TL++++ + + +G CPYF R M+ F +++
Sbjct: 180 RQDPGTVELCDFHEKLGKMEPGQLIPQGVRTLEEVKEYARDKGICPYFAIRRMLPFVDII 239
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
+YS+ YLLDPK+A +SKEM K+++VVFDEAHNIDNVCIE+LS+ + R L+ A R++++
Sbjct: 240 IYSFHYLLDPKIAEQVSKEMSKDAIVVFDEAHNIDNVCIESLSIDLTRPMLDSAYRSINQ 299
Query: 266 INQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRR 325
+++ ++ K TDA +L+ EY RLVEGL +G A+++++NP LP D+L+EAVPGNIRR
Sbjct: 300 LSEHVDEIKKTDASKLQDEYARLVEGLQEQGEQREAESFMANPVLPDDLLQEAVPGNIRR 359
Query: 326 AEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLT 385
AEHF+ L+R V+YL+ R+ +V E P SF+ + I++K LRFC ERL L+ T
Sbjct: 360 AEHFVAFLKRFVEYLKTRMRVLHVVAETPASFLQHLKDITYIERKPLRFCAERLRMLVST 419
Query: 386 LEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVK 445
LE+T DEF +Q + FATLV TY +GF +I+EPF+ +P+P+ +C DASLA+
Sbjct: 420 LELTRLDEFSALQKVAAFATLVATYDKGFLLILEPFETENATVPNPIFHFTCLDASLAIA 479
Query: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
PVF+RF SV+ITSGT+SP+D+YP++L F +V S+ M+LTR C P+V+TRGSDQ+ +S
Sbjct: 480 PVFERFSSVIITSGTISPLDMYPKMLKFDAIVQESYAMTLTRQCFLPLVITRGSDQVAIS 539
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
++F++R+DP V RNYG +L+E VPDGIV FF SY YM+ I+A W+D GIL E+ ++K
Sbjct: 540 SRFEVRNDPAVVRNYGSILIEYAKCVPDGIVAFFPSYLYMESIVAAWHDMGILDEVWKYK 599
Query: 566 LVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L+FIET D ET++AL+NYR+ACD GRGA+ SVARGKV+EGIDFD +YGR VIMFGVP+
Sbjct: 600 LIFIETPDAPETSIALENYRRACDNGRGAILLSVARGKVSEGIDFDHNYGRAVIMFGVPY 659
Query: 626 QYTLSK 631
QYT S+
Sbjct: 660 QYTESR 665
>gi|449547579|gb|EMD38547.1| hypothetical protein CERSUDRAFT_113726 [Ceriporiopsis subvermispora
B]
Length = 794
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/638 (51%), Positives = 457/638 (71%), Gaps = 10/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPYD IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFHIDDLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ------TRHLGPAAKILAIGLSSRKN 114
P N KLIYC+RTV E+EK LAELK L +Y+ +GL+SRKN
Sbjct: 61 QFYP-NKRKLIYCSRTVPEIEKALAELKRLMDYRMTCAETEEEKAKEQNFYGLGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC++ V + VDA CR T S V +NP ++E C++ EN + ++PPG
Sbjct: 120 LCLHPEVSKEKKGRVVDARCRDLTNSAVCEKGRQNPGSVELCDWHENLGQMEPGNLIPPG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++TL D+ +G+ + CPYFL R M+ F +V++YS+ YLLDPKVA +S+E+ K+++VVF
Sbjct: 180 IWTLADVLQYGRDKRVCPYFLVRRMMPFVDVIIYSFHYLLDPKVAEQVSREVSKDAIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ A R++ R+ ++IE K TDA +L+ EY +LVEGL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSAARSVGRLGEKIEEIKKTDASKLQDEYAKLVEGLQ 299
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
D++++NP LP D+LKEA+PGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 EASQ--DEDSFMANPVLPEDLLKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAET 357
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
P+SF+ + I+++ LRFC ERL SL+ TLE+ DE +Q + FATLV TY +G
Sbjct: 358 PLSFLQHLKDITYIERRPLRFCAERLQSLVRTLELNRLDELSALQKVAGFATLVATYEKG 417
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
F +I+EPF+ +P+P+ L+C D ++A+KPVF+RF +VVITSGT+SP+D+YP++L F
Sbjct: 418 FLLILEPFETDNATVPNPIFHLTCLDPAIAIKPVFERFSTVVITSGTISPLDMYPKMLQF 477
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
PVV ++ M+LTR+ P+V+TRGSDQ+ +S++F++R+DP V RN+G +LVE IVPD
Sbjct: 478 TPVVQETYSMTLTRNSFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGSILVEYSKIVPD 537
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GIV FF SY YM+ I+A WND GIL E+ +HKL+F+ET D ET++AL+NYR+ACD GRG
Sbjct: 538 GIVAFFPSYLYMESIVAAWNDMGILNEVWKHKLIFVETPDANETSIALENYRRACDNGRG 597
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AV SVARGKV+EGIDFD +YGR VIMFGVP+QYT S+
Sbjct: 598 AVLLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTESR 635
>gi|443898496|dbj|GAC75831.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, 5'-3' helicase subunit RAD3
[Pseudozyma antarctica T-34]
Length = 851
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/666 (50%), Positives = 462/666 (69%), Gaps = 36/666 (5%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ V FPY IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++L SLI SY
Sbjct: 1 MKFYIDELPVLFPYPKIYPEQYAYMTDLKRTLDANGHCVLEMPSGTGKTVSLFSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHL------------------GPA- 101
L P KLIYC+RTV E+EK LAELK L Y+ R+ GPA
Sbjct: 61 LFHPAKR-KLIYCSRTVPEIEKALAELKRLMEYRARYNVPEGEESHVAKSDADGTNGPAD 119
Query: 102 ---------------AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
ILA+GLSSRKNLC++ V VDA CR T+SW
Sbjct: 120 DDIEMKGRGKAGGQMEDILALGLSSRKNLCIHPDVGRERKGKVVDARCRDMTSSWACEKG 179
Query: 147 AENP-NIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
++P +++ C+F E K ++P GV+TL++++ + + +G CPYF R M+ F +++
Sbjct: 180 RQDPGSVQLCDFHEELGKMEPGQLIPQGVWTLEEVKEYARVKGICPYFAIRRMIPFVDII 239
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
VYS+ YLLDPK+A +SKEM K+++VVFDEAHNIDNVCIE+LS+ + R L+ A R++++
Sbjct: 240 VYSFHYLLDPKIAEQVSKEMSKDAIVVFDEAHNIDNVCIESLSIDLTRPMLDSAYRSINQ 299
Query: 266 INQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRR 325
+++ ++ K TDA +L+ EY RLVEGL +G A+++++NP LP D+L+EAVPGNIRR
Sbjct: 300 LSERVDEIKRTDASKLQDEYARLVEGLQEQGEQREAESFMANPVLPDDLLQEAVPGNIRR 359
Query: 326 AEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLT 385
AEHF+ L+R V+YL+ R+ +V E P SF+ + I++K LRFC ERL L+ T
Sbjct: 360 AEHFVAFLKRFVEYLKTRMRVLHVVAETPASFLQHLKDITYIERKPLRFCAERLRMLVGT 419
Query: 386 LEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVK 445
LE+T DE+ +Q + FATLV TY +GF +I+EPF+ +P+P+ +C DASLA+
Sbjct: 420 LELTRLDEYSALQKVAAFATLVATYDKGFLLILEPFETENATVPNPIFHFTCLDASLAIA 479
Query: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
PVF+RF SV+ITSGT+SP+D+YP++L F +V S+ M+LTR C P+V+TRGSDQ+ +S
Sbjct: 480 PVFERFSSVIITSGTISPLDMYPKMLKFDAIVQESYAMTLTRQCFLPLVITRGSDQVAIS 539
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
++F++R+DP V RNYG +L+E VPDGIV FF SY YM+ I+A W+D GIL E+ ++K
Sbjct: 540 SRFEVRNDPAVVRNYGSILIEYAKCVPDGIVAFFPSYLYMESIVAAWHDMGILDEVWKYK 599
Query: 566 LVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L+FIET D ET++AL+NYR+ACD GRGA+ SVARGKV+EGIDFD +YGR VIMFGVP+
Sbjct: 600 LIFIETPDAPETSIALENYRRACDNGRGAILLSVARGKVSEGIDFDHNYGRAVIMFGVPY 659
Query: 626 QYTLSK 631
QYT S+
Sbjct: 660 QYTESR 665
>gi|21322260|gb|AAM45142.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 (xeroderma pigmentosum D) [Homo
sapiens]
Length = 736
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/607 (54%), Positives = 441/607 (72%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y + P KLIYC+RTV E+EK +
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
EL+ L N+ + G L + LSSRKNLC++ V VD C TAS+VRA
Sbjct: 61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+ ++ C F+E ++ LP G+Y L DL+A G++QGWCPYFLAR+ + ANV
Sbjct: 121 QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV 180
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+ NL
Sbjct: 181 VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 240
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + + R K TD RLR EY RLVEGL DA L+NP LP ++L+EAVPG+IR
Sbjct: 241 TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR 300
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
AEHFL LRRL++Y++ RL ++V +E P +F++ + I +K LRFC ERL SL+
Sbjct: 301 TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH 360
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLEITD +F + + +FATLV TY +GF+IIIEPFD+R P I +P+L SC DASLA+
Sbjct: 361 TLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAI 420
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+L R C+CPM++ RG+DQ+ +
Sbjct: 421 KPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQVAI 480
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY YM+ +A+W + GIL+ I ++
Sbjct: 481 SSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRN 540
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV+EGIDF HYGR VIMFGVP
Sbjct: 541 KLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVP 600
Query: 625 FQYTLSK 631
+ YT S+
Sbjct: 601 YVYTQSR 607
>gi|195123085|ref|XP_002006040.1| GI20811 [Drosophila mojavensis]
gi|193911108|gb|EDW09975.1| GI20811 [Drosophila mojavensis]
Length = 745
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/607 (52%), Positives = 439/607 (72%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
MLELKR+LDAKGHCLLEMP+GTGKT LLSL+ +Y++ PE KLIYC+RTV E+EK +
Sbjct: 1 MLELKRSLDAKGHCLLEMPSGTGKTATLLSLVVAYMIEHPETVRKLIYCSRTVPEIEKVI 60
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
AEL+ L Y R+ A + LSSRKNLC++ V +VD C TAS++R
Sbjct: 61 AELQNLMAYYERNAPVAPGFTGLVLSSRKNLCIHPEVSKEREGKAVDGKCYGLTASYIRE 120
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+P + C++FE + + LP GVY++ DL+ +G+ + WCPYFLAR+ + A++
Sbjct: 121 RHELDPEVPICQYFEGFTLEGKESTLPVGVYSIDDLKEYGRSRNWCPYFLARYAIAHAHI 180
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNIDNVCI+++SV + R+T+E +T L+
Sbjct: 181 VVYSYHYLLDPKIAQVVSKEMTRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNALN 240
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
++ + ++ + D RL EY R+V+GL D L+NP LP+D+L E VPGNIR
Sbjct: 241 QLTKLVQEMREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIR 300
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
A+HFL LRR ++Y++ RL +V +E P F+ +++ I++K LRFC ERL SL+
Sbjct: 301 NADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKDVSSKICIERKPLRFCAERLSSLLR 360
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLEITD EF + I FATLV TYT+GF+IIIEPFD++ P + +P++ SC D+S+A+
Sbjct: 361 TLEITDMTEFGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPIMHFSCLDSSIAM 420
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
PVF RFQ+VVITSGTLSP+D+YP++L+F PVV SF M+L R C+ PM++++G+DQ+ +
Sbjct: 421 APVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMIVSKGNDQVAI 480
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+KF+ R D V RNYG+LLVE+ VPDGIVCFF SY Y++ ++A+W D GI+ ++++
Sbjct: 481 SSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTLLRY 540
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+FIETQD ET+ AL NY KACDCGRGAV +VARGKV+EG+DFD HYGR V+MFG+P
Sbjct: 541 KLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMFGIP 600
Query: 625 FQYTLSK 631
+ YT S+
Sbjct: 601 YVYTQSR 607
>gi|164662899|ref|XP_001732571.1| hypothetical protein MGL_0346 [Malassezia globosa CBS 7966]
gi|159106474|gb|EDP45357.1| hypothetical protein MGL_0346 [Malassezia globosa CBS 7966]
Length = 837
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/652 (51%), Positives = 458/652 (70%), Gaps = 22/652 (3%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQYSYM++LKR LD KGH +LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYSYMVDLKRTLDVKGHGVLEMPSGTGKTVSLLSLIISYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRH--------------------LGP 100
P KL+YC+RTV E+EK LAELK L Y+ ++ G
Sbjct: 61 RFYP-GSRKLVYCSRTVSEIEKALAELKRLMAYRAKYNTKKQLSDGIEPMDVDSEDIQGQ 119
Query: 101 AAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFE 159
ILA+GLSSRKN+CV+ V VDA CR T++W ++P ++E C+F E
Sbjct: 120 MEDILALGLSSRKNMCVHPTVSQERKGKVVDARCRDMTSAWACEKGRQDPGSVELCDFHE 179
Query: 160 NYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAG 219
K ++PPGV+T+++L + K +G CPYF R M+ F ++++YS+ YLLDPKVA
Sbjct: 180 ELGKLEPGHLVPPGVWTIEELIEYSKDKGICPYFAVRRMMPFCDIIIYSFHYLLDPKVAE 239
Query: 220 IISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAG 279
+SKE+ K+++VVFDEAHNIDNVCIE+LS+ + R L+ A R ++++ +++ K D+
Sbjct: 240 QVSKEISKDAIVVFDEAHNIDNVCIESLSIDLTRPILDNAYRCVNQLADKVDEVKKVDSA 299
Query: 280 RLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQY 339
RL+ EY RLVEGL + + A+++++NP LP D+L+EA+PGNIRRAEHF+ LRR V+Y
Sbjct: 300 RLQDEYVRLVEGLQQQSDDREAESFMANPVLPDDLLQEAIPGNIRRAEHFVAFLRRFVEY 359
Query: 340 LRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQT 399
L+ R+ +V E P SF+ + I++K LRFC ERL L+ TLE+T DE+ +QT
Sbjct: 360 LKTRMRVLHVVAETPASFLQHLKEITFIERKPLRFCAERLRMLVQTLELTRLDEYSALQT 419
Query: 400 ICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSG 459
+ FATLV TY +GF +I+EPF+ +P+P+ +C DASLA+ PVF+RF SV+ITSG
Sbjct: 420 VAFFATLVSTYDKGFLLILEPFETEQATVPNPIFHFTCLDASLAIAPVFERFSSVIITSG 479
Query: 460 TLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARN 519
T+SP+D+YP++L F VV S+ M+LTR C P+V+TRGSDQ+ +S++F++R+DP V RN
Sbjct: 480 TISPLDMYPKMLRFDTVVQESYTMTLTRQCFLPLVITRGSDQVAISSRFEVRNDPSVVRN 539
Query: 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTL 579
YG +L+E +PDGIV FF SY YM+ I+A W+D GIL E+ +HKLVFIET D ET++
Sbjct: 540 YGNILIEYSRCIPDGIVAFFPSYLYMESIVAAWHDMGILDEVWRHKLVFIETPDAPETSI 599
Query: 580 ALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AL+NYR+ACD GRGA+ SVARGKV+EGIDFD +YGR VIMFGVP+QYT S+
Sbjct: 600 ALENYRRACDNGRGAILLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTESR 651
>gi|307210249|gb|EFN86899.1| TFIIH basal transcription factor complex helicase subunit
[Harpegnathos saltator]
Length = 735
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/607 (52%), Positives = 433/607 (71%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
MLELKR LDAKGHCLLEMP+GTGKTI LLSLI +Y+L P N KLIYC+RTV E+EK +
Sbjct: 1 MLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYMLEYPLNVTKLIYCSRTVPEIEKVI 60
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
ELK L +Y KI+ + LSSRKN+C++ V VD C TAS+VR
Sbjct: 61 EELKKLIDYYETETKSKPKIVGLVLSSRKNMCIHPEVSREREGKIVDGRCHSLTASYVRE 120
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+ + C F+E ++ ++PPG+Y+L DL+ +GK +GWCPYFLAR + A +
Sbjct: 121 RHNHDESTPICNFYEGFDMEGREQIVPPGIYSLDDLKDYGKDRGWCPYFLARFTILHAQI 180
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A +SKE+ K SVVVFDEAHNIDNVCI+++SV + ++ +E +T N+
Sbjct: 181 VVYSYHYLLDPKIAETVSKELSKSSVVVFDEAHNIDNVCIDSMSVKINKKLMERSTNNIQ 240
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + + + D +L+ EY+RLV GL D L+NP LP +IL+E VPGNIR
Sbjct: 241 LLEKTVAEMRDCDVNKLKEEYDRLVAGLRDAQLARETDVILANPVLPDEILEEIVPGNIR 300
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
AEHF+ L+R V+YL+ RL ++V +E P +F+ I A I++K LRFC +RL SL+
Sbjct: 301 NAEHFVSFLKRFVEYLKTRLRVQHVMQESPAAFLRDIQAKVSIERKPLRFCAQRLASLLR 360
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
T+EITD +F I + ATLV TYT GF+II+EPFD++ P + +P+L SC D+S+A+
Sbjct: 361 TMEITDMTDFSPIILVTHLATLVSTYTHGFTIIVEPFDDKTPTVLNPILHFSCLDSSIAI 420
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KP+FDRFQSV+ITSGTLSP+D+YP++LNFHPV+ SF M+L R C+ PM++ +G+DQ+ +
Sbjct: 421 KPIFDRFQSVIITSGTLSPLDMYPKILNFHPVIMSSFTMTLARPCLLPMIVAKGNDQVAI 480
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+K++ R D V RNYG+LLVE + VPDG+VCFF SY YM+ ++A W D G++ ++ +H
Sbjct: 481 SSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFTSYLYMESVVAAWYDQGVVDQLQRH 540
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+FIETQD ET+LAL NY KAC+ GRGAV SVARGKV+EG+DFD H GR V+MFG+P
Sbjct: 541 KLLFIETQDSAETSLALINYIKACENGRGAVLLSVARGKVSEGVDFDHHLGRAVLMFGIP 600
Query: 625 FQYTLSK 631
+ YT S+
Sbjct: 601 YVYTQSR 607
>gi|21961619|gb|AAH34517.1| Ercc2 protein [Mus musculus]
Length = 739
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/631 (52%), Positives = 446/631 (70%), Gaps = 21/631 (3%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAY- 59
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
++ + EL+ L ++ + G L + LSSRKNLC++
Sbjct: 60 --------------------QRVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 99
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL
Sbjct: 100 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDL 159
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G +QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 160 KALGHRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 219
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 220 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 279
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 280 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 339
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 340 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 399
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +PVL SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 400 FDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 459
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 460 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 519
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 520 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 579
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 580 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 610
>gi|71020135|ref|XP_760298.1| hypothetical protein UM04151.1 [Ustilago maydis 521]
gi|46100007|gb|EAK85240.1| hypothetical protein UM04151.1 [Ustilago maydis 521]
Length = 850
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/666 (50%), Positives = 460/666 (69%), Gaps = 36/666 (5%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ V FPY IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFYIDELPVLFPYPKIYPEQYAYMTDLKRTLDANGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRH-------LGPAAK---------- 103
P KLIYC+RTV E+EK LAELK L Y+ R+ G K
Sbjct: 61 QFHPAKR-KLIYCSRTVPEIEKALAELKRLMEYRARYNVQQDQASGVLKKESQSSDRPGE 119
Query: 104 -----------------ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
ILA+GLSSRKNLC++ V VDA CR T+SW
Sbjct: 120 HNIEMNGKGNTGSQMEDILALGLSSRKNLCIHPDVSRERKGKVVDARCRDMTSSWACEKG 179
Query: 147 AENP-NIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
++P ++E C F E K ++P GV+TL++++ + +++ CPYF R M+ F +++
Sbjct: 180 RQDPGSVELCNFHEELGKMEPGQLIPQGVWTLEEVKEYAREKAICPYFAIRRMMPFVDII 239
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
+YS+ YLLDPKVA +SKEM K+++VVFDEAHNIDNVCIE+LS+ + R L+ A R++++
Sbjct: 240 IYSFHYLLDPKVAEQVSKEMSKDAIVVFDEAHNIDNVCIESLSIDLTRPMLDSAYRSINQ 299
Query: 266 INQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRR 325
+++ ++ K TDA +L+ EY RLVEGL +G A+++++NP LP D+L+EAVPGNIRR
Sbjct: 300 LSERVDEIKKTDASKLQDEYARLVEGLQQQGEQREAESFMANPVLPDDLLQEAVPGNIRR 359
Query: 326 AEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLT 385
AEHF+ L+R V+YL+ R+ +V E P SF+ + I++K LRFC ERL L+ T
Sbjct: 360 AEHFVAFLKRFVEYLKTRMRVLHVVAETPASFLQHLKDITYIERKPLRFCAERLRMLVGT 419
Query: 386 LEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVK 445
LE+T DEF +Q + FATLV TY +GF +I+EPF+ +P+P+ +C DASLA+
Sbjct: 420 LELTRLDEFSALQKVAAFATLVATYDKGFLLILEPFETENATVPNPIFHFTCLDASLAIA 479
Query: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
PVF+RF SV+ITSGT+SP+D+YP++L F +V S+ M+LTR C P+V+TRGSDQ+ +S
Sbjct: 480 PVFERFSSVIITSGTISPLDMYPKMLKFDAIVQESYAMTLTRQCFLPLVITRGSDQVAIS 539
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
++F++R+DP V RNYG +L+E VPDGIV FF SY YM+ I+A W+D GIL E+ ++K
Sbjct: 540 SRFEVRNDPAVVRNYGSILIEYAKCVPDGIVAFFPSYLYMESIVAAWHDMGILDEVWKYK 599
Query: 566 LVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L+FIET D ET++AL+NYR+ACD GRGA+ SVARGKV+EGIDFD +YGR VIMFGVP+
Sbjct: 600 LIFIETPDAPETSIALENYRRACDNGRGAILLSVARGKVSEGIDFDHNYGRAVIMFGVPY 659
Query: 626 QYTLSK 631
QYT S+
Sbjct: 660 QYTESR 665
>gi|409082328|gb|EKM82686.1| hypothetical protein AGABI1DRAFT_118129 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 792
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/638 (52%), Positives = 453/638 (71%), Gaps = 9/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ + FPYD IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFFIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA------KILAIGLSSRKN 114
P KLIYC+RTV E+EK L ELK L Y+ + +GL+SRKN
Sbjct: 61 QFYPTKR-KLIYCSRTVPEIEKALTELKRLMKYREEAAESEEEKIRERNYMGLGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC+N V + VDA CR T S V +P ++E C++ EN K ++P G
Sbjct: 120 LCINPEVSREKKGKVVDARCRDLTNSAVCEKGRADPGSVELCDWHENLGKMEPGHLMPAG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++TL D+ +GK+Q CPYF R M+ F + V+YS+ YLLDPKVA +SKEM K+S+VVF
Sbjct: 180 IWTLADVLDYGKEQRICPYFAVRRMMPFVDAVIYSFHYLLDPKVAEQVSKEMSKDSIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ A R+++++ ++IE K TDA +L+ EY +LVEGL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSAVRSVTKLGEKIEEVKTTDAAKLQDEYAKLVEGLQ 299
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
+ +A L+NP LP DILKEA+PGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 EPDDSDTDNA-LANPVLPEDILKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAET 358
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
P+SF+ + I+++ LRFC ERL SL+ TLE++ DE +Q + FATLV TY +G
Sbjct: 359 PLSFLQHLKDITYIERRPLRFCAERLQSLIRTLELSRLDEHSSLQKVATFATLVATYEKG 418
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
F +I+EPF+ +P+P+ +C D SLA+KPVF+RF SVVITSGT+SP+D+YP++L F
Sbjct: 419 FLLILEPFETDNATVPNPIFHFTCLDPSLAIKPVFERFSSVVITSGTISPLDMYPKMLQF 478
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
PVV ++ M+LTR+ P+V+TRGSDQ+ +S++F++R+DP V RN+G +LVE IVPD
Sbjct: 479 TPVVQETYSMTLTRNAFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGSILVEYSKIVPD 538
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GIV FF SY YM+ I+A WND GIL E+ +HKL+F+ET D ET++AL+NYR+ACD GRG
Sbjct: 539 GIVAFFPSYLYMESIVAAWNDMGILNEVWKHKLIFVETPDANETSIALENYRRACDNGRG 598
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AV SVARGKV+EGIDFD +YGR V+MFGVP+QYT S+
Sbjct: 599 AVLLSVARGKVSEGIDFDHNYGRAVLMFGVPYQYTESR 636
>gi|426200162|gb|EKV50086.1| hypothetical protein AGABI2DRAFT_183219 [Agaricus bisporus var.
bisporus H97]
Length = 792
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/638 (52%), Positives = 453/638 (71%), Gaps = 9/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ + FPYD IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFFIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA------KILAIGLSSRKN 114
P KLIYC+RTV E+EK L ELK L Y+ + +GL+SRKN
Sbjct: 61 QFYPTKR-KLIYCSRTVPEIEKALTELKRLMKYREEAAESEEEKIKERNYMGLGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC+N V + VDA CR T S V +P ++E C++ EN K ++P G
Sbjct: 120 LCINPEVSREKKGKVVDARCRDLTNSAVCEKGRADPGSVELCDWHENLGKMEPGHLMPAG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++TL D+ +GK+Q CPYF R M+ F + V+YS+ YLLDPKVA +SKEM K+S+VVF
Sbjct: 180 IWTLADVLDYGKEQRICPYFAVRRMMPFVDAVIYSFHYLLDPKVAEQVSKEMSKDSIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ A R+++++ ++IE K TDA +L+ EY +LVEGL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSAVRSVTKLGEKIEEVKTTDAAKLQDEYAKLVEGLQ 299
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
+ +A L+NP LP DILKEA+PGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 EPDDSDTDNA-LANPVLPEDILKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAET 358
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
P+SF+ + I+++ LRFC ERL SL+ TLE++ DE +Q + FATLV TY +G
Sbjct: 359 PLSFLQHLKDITYIERRPLRFCAERLQSLIRTLELSRLDEHSSLQKVATFATLVATYEKG 418
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
F +I+EPF+ +P+P+ +C D SLA+KPVF+RF SVVITSGT+SP+D+YP++L F
Sbjct: 419 FLLILEPFETDNATVPNPIFHFTCLDPSLAIKPVFERFSSVVITSGTISPLDMYPKMLQF 478
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
PVV ++ M+LTR+ P+V+TRGSDQ+ +S++F++R+DP V RN+G +LVE IVPD
Sbjct: 479 TPVVQETYSMTLTRNAFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGSILVEYSKIVPD 538
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GIV FF SY YM+ I+A WND GIL E+ +HKL+F+ET D ET++AL+NYR+ACD GRG
Sbjct: 539 GIVAFFPSYLYMESIVAAWNDMGILNEVWKHKLIFVETPDANETSIALENYRRACDNGRG 598
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AV SVARGKV+EGIDFD +YGR V+MFGVP+QYT S+
Sbjct: 599 AVLLSVARGKVSEGIDFDHNYGRAVLMFGVPYQYTESR 636
>gi|409045964|gb|EKM55444.1| hypothetical protein PHACADRAFT_256068 [Phanerochaete carnosa
HHB-10118-sp]
Length = 792
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/638 (52%), Positives = 451/638 (70%), Gaps = 10/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPYD IYPEQYSYM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFYIDDLPVIFPYDRIYPEQYSYMCDLKRTLDAGGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ------TRHLGPAAKILAIGLSSRKN 114
P KLIYC+RTV E+EK LAELK L Y+ +GL+SRKN
Sbjct: 61 QFYPARR-KLIYCSRTVPEIEKALAELKRLMEYRLSIAETEEQQAKERGFYGLGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC++ V + VDA CR T S V +NP +++ C++ EN K ++PPG
Sbjct: 120 LCIHPEVSKEKKGRVVDARCRDLTNSAVCQKGRDNPGSVDLCDWHENLGKLEPGNLIPPG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++TL D+ +G+ CPYFL R M+ F +VV+YS+ YLLDPKVA +SKEM K+S+VVF
Sbjct: 180 IWTLADVLQYGRDNVVCPYFLVRRMMAFVDVVIYSFHYLLDPKVAEQVSKEMSKDSIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ A R+++R+ +IE K TDA +L+ EY +LVEGL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSAARSVTRLGDKIEEIKRTDASKLQDEYAKLVEGLQ 299
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
D+ ++NP LP D+L EA+PGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 EAAT--DEDSLVANPVLPEDLLTEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAET 357
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
P+SF+ + I+++ LRFC ERL SL+ TLE+ DEF +Q + FATLV TY +G
Sbjct: 358 PLSFLQHLKDITYIERRPLRFCAERLQSLVRTLELNRLDEFSALQKVASFATLVATYEKG 417
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
F +I+EPF+ +P+P+ +C D S+A+K VF+RF SVVITSGT+SP+D+YP++L F
Sbjct: 418 FLLILEPFETDNATVPNPIFHFTCLDPSIAIKTVFERFSSVVITSGTISPLDMYPKMLQF 477
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
PV+ S+ M+LTR+ P+V+TRGSDQ+ +S++F++R+DP V RN+G +L+E IVPD
Sbjct: 478 TPVIQESYSMTLTRNSFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGSILIEYSKIVPD 537
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GIV FF SY YM+ I+A WND GIL E+ ++KL+F+ET D ET++AL+NYR+ACD GRG
Sbjct: 538 GIVAFFPSYLYMESIVAAWNDMGILNEVWKYKLIFVETPDANETSIALENYRRACDNGRG 597
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AV SVARGKV+EGIDFD +YGR VIMFGVP+QYT S+
Sbjct: 598 AVLLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTESR 635
>gi|402224656|gb|EJU04718.1| DNA repair helicase [Dacryopinax sp. DJM-731 SS1]
Length = 798
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/639 (51%), Positives = 457/639 (71%), Gaps = 9/639 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++ + + FPYD IYPEQYSYM +LK+ LDA+GH +LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFNIDGLPIIFPYDRIYPEQYSYMCDLKKTLDAQGHGVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHL-GPAAKI-----LAIGLSSRKN 114
P +P KLIYC+RTV E+EK L+EL+ L Y+ P ++ + +GL+SRKN
Sbjct: 61 QHSP-HPRKLIYCSRTVPEIEKALSELQRLMKYRVSQAETPEERMKEESFIGLGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC++ V + VDA CR T S NP ++ C++ E + ++PPG
Sbjct: 120 LCLHPDVSKEKKGKVVDARCRDLTNSAACEKGRANPGSVPLCDWHERLGEKEPGNLIPPG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
+YTL ++ +G+ +G CPYF R M+ F +V++YS+ YLLDPKVA +SKE K+++VVF
Sbjct: 180 IYTLAEVLQYGRDEGVCPYFTIRRMMPFVDVIIYSFHYLLDPKVAEQVSKEFSKDAIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ ATR++ R+ ++IE K TDA +L+ EY +LVEGL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSATRSVVRLTEKIEEIKETDASKLQDEYAKLVEGLQ 299
Query: 294 LRGN-LPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKE 352
N DA+++N LP D+LKEA+PGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 EANNETSDEDAFVANAVLPDDLLKEAIPGNIRKAEHFIAFLKRFVEYLKTRMRVLHVVAE 359
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
P+SF+ + I+++ LRFC ERL SL+ TLE+ DE+ +Q + FATLV TY +
Sbjct: 360 TPLSFLQHLKDITYIERRPLRFCAERLQSLVRTLELNQLDEYFALQKVASFATLVATYEK 419
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
GF +I+EPF+ +P+P+ +C D SLA+KP+F+RF SVVITSGT+SP+D+YP++L
Sbjct: 420 GFLLILEPFETETATVPNPIFHFTCLDPSLAIKPIFERFSSVVITSGTISPLDMYPKMLQ 479
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
F PV+ S+ M+LTR+C P+V+TRGSDQ+ VS++F++R+DP V RN+G +L+E IVP
Sbjct: 480 FTPVIQESYPMTLTRNCFLPLVITRGSDQVAVSSRFEVRNDPAVVRNFGSILIEYSKIVP 539
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR 592
DGIV FF SY YM+ I+A WND GIL E+ ++KL+F+ET D ET++AL+NYR+AC+ GR
Sbjct: 540 DGIVAFFPSYLYMESIVAAWNDMGILNEVWKNKLIFVETPDANETSIALENYRRACNNGR 599
Query: 593 GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GAV SVARGKV+EGIDFD +YGR VIMFGVP+QYT S+
Sbjct: 600 GAVMLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTQSR 638
>gi|393220578|gb|EJD06064.1| DNA repair helicase [Fomitiporia mediterranea MF3/22]
Length = 800
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/638 (51%), Positives = 453/638 (71%), Gaps = 10/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPYD IYPEQY YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFLIDDLPIIFPYDRIYPEQYQYMCDLKRTLDASGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK------ILAIGLSSRKN 114
P KLIYC+RTV E+EK LAELK L Y+ +H + +GL+SRKN
Sbjct: 61 QFYP-TKRKLIYCSRTVPEIEKALAELKRLMEYRIQHAETEEERQKERAFTGVGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC++ V VDA CR T+++ A NP ++ TC F + E ++PPG
Sbjct: 120 LCLHPEVSKERKGVVVDARCRDLTSAFTMERARNNPGSVPTCSFHDELEAFEPGNLIPPG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++TL D+ +G+ +G CPYF R M+ F +V++YS+ YLLDPKVA +SK++ K+++VVF
Sbjct: 180 IHTLADVLQYGRDKGVCPYFTVRRMMAFVDVIIYSFHYLLDPKVAEQVSKDISKDAIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVC+E+LS+ + R L+ A R+++R+ +IE K TDA RL+ EY +LVEGL
Sbjct: 240 DEAHNIDNVCLESLSIDLTRPMLDSAARSVTRLGDKIEEIKITDASRLQDEYAKLVEGLQ 299
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
DA ++NP LP D+LKEAVPGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 EADEARQEDAIMANPVLPDDLLKEAVPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAET 359
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
P+SF+ + I+++ LRFC ERL SL+ TLE+T+ DE+ +Q + +FATLV TY +G
Sbjct: 360 PLSFLQHLKDITFIERRPLRFCAERLQSLVRTLELTNLDEYASLQKVANFATLVATYEKG 419
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
F +I+EPF+ +P+P+ +C D SLA+ PVF+RF SVVITSGT+SP+D+YP++L F
Sbjct: 420 FLLILEPFETDNATVPNPIFHFTCLDPSLAIAPVFERFSSVVITSGTISPLDMYPKMLQF 479
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
PVV ++ M+LTR+ P+V+TRGSDQ+ +S++F++R+DP V RN+G +LVE IVPD
Sbjct: 480 TPVVQETYAMTLTRNSFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGAILVEYSKIVPD 539
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GI FF SY YM+ I+A WND GIL E+ +HKL+F+ET D ET++AL+NYR+AC+ GRG
Sbjct: 540 GIAAFFPSYLYMESIVAAWNDMGILNEVWKHKLIFVETPDANETSIALENYRRACNNGRG 599
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AV SVARGKV+EGIDFD +YGR VI+ VP+QYT S+
Sbjct: 600 AVLLSVARGKVSEGIDFDHNYGRAVII--VPYQYTESR 635
>gi|431909160|gb|ELK12750.1| TFIIH basal transcription factor complex helicase subunit [Pteropus
alecto]
Length = 736
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/607 (53%), Positives = 443/607 (72%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
MLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y + P KLIYC+RTV E+EK +
Sbjct: 1 MLELKRTLDAKGHGILEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
EL+ L ++ + G + L + LSSRKNLC++ V VD C TAS+VRA
Sbjct: 61 EELRKLLSFYEKQEGEKLQFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
++ ++ C F+E ++ LP G+Y L DL+A G++QGWCPYFLAR+ + ANV
Sbjct: 121 QYQQDHSLPHCRFYEEFDIHGRQVPLPAGIYNLDDLKAMGRRQGWCPYFLARYSILHANV 180
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+ NL
Sbjct: 181 VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 240
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + + R K TD RLR EY RLVEGL DA L+NP LP ++L+EAVPG+IR
Sbjct: 241 TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR 300
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
AEHFL LRRL++Y++ RL +++ +E P +F++ + I +K LRFC ERL SL+
Sbjct: 301 TAEHFLGFLRRLLEYVKWRLRAQHMVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH 360
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLEI D +F + + +FATLV TY +GF+IIIEPFD+R P I +P+L SC DASLA+
Sbjct: 361 TLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTITNPILHFSCMDASLAI 420
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+L R C+CPM++ RG+DQ+ +
Sbjct: 421 KPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQVTI 480
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
++KF+ R D V RNYG LL+EM ++VPDGIV FF SY YM+ +A+W + GIL+ I ++
Sbjct: 481 TSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRN 540
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV+EGIDF H+GR VIMFGVP
Sbjct: 541 KLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHFGRAVIMFGVP 600
Query: 625 FQYTLSK 631
+ YT S+
Sbjct: 601 YVYTQSR 607
>gi|393236508|gb|EJD44056.1| DNA repair helicase [Auricularia delicata TFB-10046 SS5]
Length = 810
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/638 (51%), Positives = 453/638 (71%), Gaps = 8/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ + FPYD IYPEQYSYM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFFIDNLPIIFPYDRIYPEQYSYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTR------HLGPAAKILAIGLSSRKN 114
P KLIYC+RTV E+EK LAELK L Y+ +GL+SRKN
Sbjct: 61 QFFPTKR-KLIYCSRTVPEIEKALAELKRLMAYRIECAETEEERERERAFTGLGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC++ V + VDA CR T + A NP ++ C + + + ++P G
Sbjct: 120 LCLHPEVAKEKKGWVVDARCRDLTCTANCEKARANPGSVPVCTWHDKLGEMEPGNLIPQG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++TL D++A+G+++G CPYF R M+ F +V++YS+ YLLDPKVA +SKE+ K+++VVF
Sbjct: 180 IWTLADVQAYGQEKGVCPYFTIRRMMPFVDVIIYSFHYLLDPKVAEQVSKELSKDAIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ A R+++R+ +IE K TDA +L+ EY +LVEGL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSAARSVTRLGDQIEEIKKTDASKLQDEYAKLVEGLQ 299
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
+ DA+++NP LP D+L EAVPGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 EAADARDEDAFIANPILPDDLLTEAVPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAET 359
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
P+SF+ + I+++ LRFC ERL SL+ TLE+T DE +Q + FATLV TY +G
Sbjct: 360 PLSFLQHLKDITFIERRPLRFCAERLQSLVRTLELTRLDEMRSLQKVASFATLVATYEKG 419
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
F +I+EPF+ +P+PV +C D SLA+KP+F+RF SVVITSGT+SP+D+YP++L F
Sbjct: 420 FLLILEPFETDNATVPNPVFHFTCLDPSLAIKPIFERFSSVVITSGTISPLDMYPKMLQF 479
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
PVV ++ M+LTRD P+V+TRGSDQ+ VS++F++R+DP V RN+G +L+E IVPD
Sbjct: 480 TPVVQETYPMTLTRDAFLPLVITRGSDQVAVSSRFEVRNDPAVVRNFGSILIEYSKIVPD 539
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GIV FF SY YM+ I+A WND GIL E+ ++KL+F+ET D ET++AL+NYR+AC+ GRG
Sbjct: 540 GIVAFFPSYLYMESIVAAWNDMGILNEVWKNKLIFVETPDANETSIALENYRRACNNGRG 599
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AV SVARGKV+EGIDFD HYGR VIMFGVP+QYT S+
Sbjct: 600 AVLLSVARGKVSEGIDFDHHYGRAVIMFGVPYQYTESR 637
>gi|388855689|emb|CCF50677.1| probable RAD3-DNA helicase/ATPase [Ustilago hordei]
Length = 847
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/666 (49%), Positives = 460/666 (69%), Gaps = 36/666 (5%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ V FPY IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFYIDELPVLFPYPRIYPEQYAYMADLKRTLDANGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRH----------------------- 97
P KLIYC+RTV E+EK LAELK L Y+ R+
Sbjct: 61 QFHPAKR-KLIYCSRTVPEIEKALAELKRLMEYRARYNLKQGQQSQVLRNQAEQGNAPSE 119
Query: 98 -------LGPAA----KILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
G A ILA+GLSSRKNLC++ V VDA CR T+SW
Sbjct: 120 HHIQMEGRGKAGAQMQDILALGLSSRKNLCIHPDVSRERKGKVVDARCRDMTSSWACEKG 179
Query: 147 AENP-NIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
++P ++E C+F E ++PPGV+TL++++ + + + CPYF R M+ F +++
Sbjct: 180 RQDPGSVELCDFHEELGNMEPGQLIPPGVWTLEEVKEYARDKRICPYFAVRRMIPFVDII 239
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
+YS+ YLLDPKVA +SKEM K+++V+FDEAHNIDNVCIE+LS+ + R L+ A R++++
Sbjct: 240 IYSFHYLLDPKVAEQVSKEMSKDAIVIFDEAHNIDNVCIESLSIDLTRPMLDSAYRSINQ 299
Query: 266 INQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRR 325
+++ +++ K TDA +L+ EY RLV+GL +G+ A+ +++NP LP D+L EA+PGNIRR
Sbjct: 300 LSERVDQIKKTDASKLQDEYARLVQGLQEQGDQREAETFMANPVLPDDLLSEAIPGNIRR 359
Query: 326 AEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLT 385
AEHF+ L+R V+YL+ R+ +V E P SF+ + I++K LRFC ERL L+ T
Sbjct: 360 AEHFVAFLKRFVEYLKTRMRVLHVVAETPASFLQHLKDITYIERKPLRFCAERLRMLVGT 419
Query: 386 LEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVK 445
LE+T DE+ +Q + FATLV TY +GF +I+EPF+ +P+P+ +C DASLA+
Sbjct: 420 LELTRLDEYSALQKVAAFATLVATYDKGFLLILEPFETENATVPNPIFHFTCLDASLAIA 479
Query: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
PVF+RF SV+ITSGT+SP+D+YP++L F ++ S+ M+LTR C P+V+TRGSDQ+ +S
Sbjct: 480 PVFERFSSVIITSGTISPLDMYPKMLKFDAIIQESYAMTLTRQCFLPLVITRGSDQVAIS 539
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
++F++R+DP V RNYG +L+E VPDGIV FF SY YM+ I+A W+D GIL ++ ++K
Sbjct: 540 SRFEVRNDPAVVRNYGSILIEYAKCVPDGIVAFFPSYLYMESIVAAWHDMGILDQVWKYK 599
Query: 566 LVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L+FIET D ET++AL+NYR+ACD GRGA+ SVARGKV+EGIDFD +YGR VIMFGVP+
Sbjct: 600 LIFIETPDAPETSIALENYRRACDNGRGAILLSVARGKVSEGIDFDHNYGRAVIMFGVPY 659
Query: 626 QYTLSK 631
QYT S+
Sbjct: 660 QYTESR 665
>gi|392567211|gb|EIW60386.1| DNA repair helicase [Trametes versicolor FP-101664 SS1]
Length = 804
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/639 (52%), Positives = 451/639 (70%), Gaps = 11/639 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPYD IYPEQY+YM +LKR LDA GHCLLEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFFIDDLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCLLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG------PAAKILAIGLSSRKN 114
P KLIYC+RTV E+EK LAELK L +Y+ H A IGL+SRKN
Sbjct: 61 QFYPTKR-KLIYCSRTVPEIEKALAELKRLMDYRKEHAETEEQREKEASFYGIGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC++ V + VDA CR T + ENP +++ C++ E K ++PPG
Sbjct: 120 LCIHPEVSKEKKGKVVDARCRDLTNAAACQKGRENPGSVDLCDWHEELGKLEPGNLIPPG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++TL D+ G+ CPYFL R M+ F +V++YS+ YLLDPKVA +SKE+ K+++VVF
Sbjct: 180 IWTLADVLQHGRDNRVCPYFLVRRMMPFVDVIIYSFHYLLDPKVAEQVSKEITKDAIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ A R++ R+ +I+ K TDA +L+ EY RLVEGL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSAARSVVRLGDKIDEIKKTDASKLQDEYMRLVEGLQ 299
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
+ DA++SNP LP D+LKEA+PGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 EAND--AEDAFVSNPVLPEDLLKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAET 357
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
P+SF+ + I+++ LRFC ERL SL+ TLE+ DEF +Q + FATLV TY +G
Sbjct: 358 PLSFLQHLKDITYIERRPLRFCAERLQSLVRTLEVNRVDEFSSLQKVASFATLVATYEKG 417
Query: 414 -FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
+ P++ +P+P+ L+C D ++A+KPVF+RF +VVITSGTLSP+D+YP++L
Sbjct: 418 TLYPLAFPYETEAATVPNPIFHLTCLDPAIAIKPVFERFSTVVITSGTLSPLDMYPKMLQ 477
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
F PVV ++ MSLTR+ P+V+TRGSDQ+ +S++F++R+DP V RN+G +L+E IVP
Sbjct: 478 FTPVVQETYAMSLTRNSFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGSILIEYSKIVP 537
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR 592
DGIV FF SY YM+ I+A WND GIL E+ +HKL+F+ET D ET++AL+NYR+ACD GR
Sbjct: 538 DGIVAFFPSYLYMESIVAAWNDMGILNEVWKHKLIFVETPDANETSIALENYRRACDNGR 597
Query: 593 GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GAV SVARGKV+EGIDFD +YGR VIMFGVP+QYT S+
Sbjct: 598 GAVLLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTESR 636
>gi|390597969|gb|EIN07368.1| DNA repair helicase [Punctularia strigosozonata HHB-11173 SS5]
Length = 796
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/639 (51%), Positives = 455/639 (71%), Gaps = 9/639 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ + FPYD IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFHIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTR------HLGPAAKILAIGLSSRKN 114
P KLIYC+RTV E+EK L+ELK L Y+ +GL+SRKN
Sbjct: 61 QFYP-TKRKLIYCSRTVPEIEKALSELKRLMEYRIECAETEEEKEKERNFSGLGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALA-AENPNIETCEFFENYEKAASAAVLPPG 173
LC++ V + VDA CR T S V AE ++E C F E + ++PPG
Sbjct: 120 LCIHPEVSKEKKGKVVDARCRDLTNSAVCERGRAEPGSVELCTFHEKLSEREPGNLIPPG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++TL D+ +G+ QG CPYF R M+ F +V++YS+ YLLDPKVA +SKE+ K+++VVF
Sbjct: 180 IWTLADVLQYGRDQGTCPYFTVRRMMPFVDVIIYSFHYLLDPKVAEQVSKELSKDAIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ A+R++ R+ ++IE K TDA +L+ EY +LVEGL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSASRSVIRLGEKIEEIKKTDASKLQDEYAKLVEGLQ 299
Query: 294 -LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKE 352
DA++++P LP D+LKEA+PGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 ETTDEQSDEDAFVTSPVLPDDLLKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAE 359
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
P+SF+ + I+++ LRFC ERL SL+ TLE+T DE+ +Q + FATLV TY +
Sbjct: 360 TPLSFLQHLKDITYIERRPLRFCAERLQSLVRTLELTRIDEYSSLQKVASFATLVSTYEK 419
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
GF +I+EPF+ +P+P+ L+C D ++A+KPVF+RF SV+ITSGT+SP+D+YP++L
Sbjct: 420 GFLLILEPFETDNATVPNPMFHLTCLDPAIAIKPVFERFSSVIITSGTISPLDMYPKMLQ 479
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
F PVV ++ M+LTR+ P+V+TRGSDQ+ VS++F++R+DP V RN+G +LVE IVP
Sbjct: 480 FTPVVQETYPMTLTRNAFLPLVITRGSDQVAVSSRFEVRNDPAVVRNFGSILVEYSKIVP 539
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR 592
DGIV FF SY YM+ I+A WND GIL E+ ++KL+F+ET D ET++AL+NYR+ACD GR
Sbjct: 540 DGIVAFFPSYLYMESIVAAWNDMGILNEVWKNKLIFVETPDANETSIALENYRRACDNGR 599
Query: 593 GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GAV SVARGKV+EGIDFD +YGR VIMFGVP+QYT S+
Sbjct: 600 GAVLLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTESR 638
>gi|17137232|ref|NP_477178.1| xeroderma pigmentosum D, isoform B [Drosophila melanogaster]
gi|281363902|ref|NP_001163231.1| xeroderma pigmentosum D, isoform C [Drosophila melanogaster]
gi|4928442|gb|AAD33587.1|AF132140_1 excision repair protein ERCC2/XPD [Drosophila melanogaster]
gi|7291258|gb|AAF46689.1| xeroderma pigmentosum D, isoform B [Drosophila melanogaster]
gi|220945966|gb|ACL85526.1| Xpd-PB [synthetic construct]
gi|272432602|gb|ACZ94503.1| xeroderma pigmentosum D, isoform C [Drosophila melanogaster]
Length = 745
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/607 (52%), Positives = 435/607 (71%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
MLELKR+LDAKGHCLLEMP+GTGKT LLSLI +Y++ PE KLIYC+RTV E+EK +
Sbjct: 1 MLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYMVEHPETVRKLIYCSRTVPEIEKVI 60
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
AEL+ L Y RH + LSSRKN+C++ V +VD C TAS++R
Sbjct: 61 AELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRE 120
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+ C++FE + + LP GVY++ DL+ +G+ + WCPYFLAR+ + A++
Sbjct: 121 RHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYGRSRNWCPYFLARYAIAHAHI 180
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNIDNVCI+++SV + R+T+E +T L+
Sbjct: 181 VVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNALN 240
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + ++ + D RL EY R+V+GL D L+NP LP+D+L E VPGNIR
Sbjct: 241 HLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIR 300
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
A+HFL LRR ++Y++ RL +V +E P F+ I++ I++K LRFC ERL SL+
Sbjct: 301 NADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKDISSKICIERKPLRFCAERLSSLLR 360
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLEI+D E+ + I FATLV TYT+GF+IIIEPFD++ P + +P+L SC D+S+A+
Sbjct: 361 TLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFSCLDSSIAM 420
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
PVF RFQ+VVITSGTLSP+D+YP++L+F PVV SF M+L R C+ PM++++G+DQ+ +
Sbjct: 421 APVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMIVSKGNDQVTI 480
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+KF+ R D V RNYG+LLVE+ VPDGIVCFF SY Y++ ++A+W D GI+ ++++
Sbjct: 481 SSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTLLRY 540
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+FIETQD ET+ AL NY KACDCGRGAV +VARGKV+EG+DFD HYGR V+MFG+P
Sbjct: 541 KLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMFGIP 600
Query: 625 FQYTLSK 631
+ YT S+
Sbjct: 601 YVYTQSR 607
>gi|19113937|ref|NP_593025.1| transcription factor TFIIH complex subunit Rad15
[Schizosaccharomyces pombe 972h-]
gi|1709995|sp|P26659.2|RAD15_SCHPO RecName: Full=DNA repair helicase rad15; AltName: Full=Protein
rhp3; AltName: Full=RAD3 homolog
gi|1177345|emb|CAA93221.1| transcription factor TFIIH complex subunit Rad15
[Schizosaccharomyces pombe]
Length = 772
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/631 (51%), Positives = 448/631 (70%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPY IYPEQY YM +LK +LDA G LLEMP+GTGKTI+LLSLI SY
Sbjct: 1 MKFYIDDLPILFPYPRIYPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E++K LAELK L Y+T LG L +GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +N + VDA CR TA +VR ++ TCEF +N E +++ GV+TL D+
Sbjct: 120 VRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLDDI 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF R M+ F NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 TEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A++++ + Q++ K +D+ +L+ EY +LV GL
Sbjct: 240 NVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAAND 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +++NP LP D+LKEAVPGNIRRAEHF+ L+R V+YL+ R++ +V E P SF+
Sbjct: 300 EDQFMANPVLPEDVLKEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ ID+K LRFC ERL SL+ L+I+ ++F +Q + FATLV TY RGF +I+EP
Sbjct: 360 VKDITFIDKKPLRFCAERLTSLVRALQISLVEDFHSLQQVVAFATLVATYERGFILILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L+ SC DAS+A+KPVF+RF+SV+ITSGTLSP+D+YP++L F+ V+ S
Sbjct: 420 FETENATVPNPILRFSCLDASIAIKPVFERFRSVIITSGTLSPLDMYPKMLQFNTVMQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ MSL R+C PMV+TRGSDQ+ +S+KF+ R+DP V RNYG +LVE I PDG+V FF
Sbjct: 480 YGMSLARNCFLPMVVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSKITPDGLVAFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ I+++W GIL E+ ++KL+ +ET D ETTLAL+ YR AC GRGAV SVA
Sbjct: 540 SYLYLESIVSSWQSMGILDEVWKYKLILVETPDPHETTLALETYRAACSNGRGAVLLSVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR VIMFG+P+QYT S+
Sbjct: 600 RGKVSEGVDFDHHYGRAVIMFGIPYQYTESR 630
>gi|5044|emb|CAA45870.1| rhp3+ [Schizosaccharomyces pombe]
Length = 772
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/631 (51%), Positives = 448/631 (70%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPY IYPEQY YM +LK +LDA G LLEMP+GTGKTI+LLSLI SY
Sbjct: 1 MKFYIDDLPILFPYPRIYPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E++K LAELK L Y+T LG L +GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +N + VDA CR TA +VR ++ TCEF +N E +++ GV+TL D+
Sbjct: 120 VRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLDDI 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF R M+ F NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 TEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELNKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A++++ + Q++ K +D+ +L+ EY +LV GL
Sbjct: 240 NVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAAND 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +++NP LP D+LKEAVPGNIRRAEHF+ L+R V+YL+ R++ +V E P SF+
Sbjct: 300 EDQFMANPVLPEDVLKEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ ID+K LRFC ERL SL+ L+I+ ++F +Q + FATLV TY RGF +I+EP
Sbjct: 360 VKDITFIDKKPLRFCAERLTSLVRALQISLVEDFHSLQQVVAFATLVATYERGFILILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L+ SC DAS+A+KPVF+RF+SV+ITSGTLSP+D+YP++L F+ V+ S
Sbjct: 420 FETENATVPNPILRFSCLDASIAIKPVFERFRSVIITSGTLSPLDMYPKMLQFNTVMQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ MSL R+C PMV+TRGSDQ+ +S+KF+ R+DP V RNYG +LVE I PDG+V FF
Sbjct: 480 YGMSLARNCFLPMVVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSKITPDGLVAFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ I+++W GIL E+ ++KL+ +ET D ETTLAL+ YR AC GRGAV SVA
Sbjct: 540 SYLYLESIVSSWQSMGILDEVWKYKLILVETPDPHETTLALETYRAACSNGRGAVLLSVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR VIMFG+P+QYT S+
Sbjct: 600 RGKVSEGVDFDHHYGRAVIMFGIPYQYTESR 630
>gi|5022|emb|CAA43022.1| rad15 [Schizosaccharomyces pombe]
Length = 772
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/631 (51%), Positives = 448/631 (70%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPY IYPEQY YM +LK +LDA G LLEMP+GTGKTI+LLSLI SY
Sbjct: 1 MKFYIDDLPILFPYPRIYPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E++K LAELK L Y+T LG L +GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +N + VDA CR TA +VR ++ TCEF +N E +++ GV+TL D+
Sbjct: 120 VRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLDDI 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF R M+ F NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 TEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A++++ + Q++ K +D+ +L+ EY +LV GL
Sbjct: 240 NVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAAND 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +++NP LP D+LKEAVPGNIRRAEHF+ L+R V+YL+ R++ +V E P SF+
Sbjct: 300 EDQFMANPVLPEDVLKEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ ID+K LRFC ERL SL+ L+I+ ++F +Q + FATLV TY RGF +I+EP
Sbjct: 360 VKDITFIDKKPLRFCAERLTSLVRALQISLVEDFHSLQQVVAFATLVATYERGFILILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L+ SC DAS+A+KPVF+RF+SV+ITSGTLSP+D+YP++L F+ V+ S
Sbjct: 420 FETENATVPNPILRFSCLDASIAIKPVFERFRSVIITSGTLSPLDMYPKMLQFNTVMQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ MSL R+C PMV+TRGSDQ+ +S+KF+ R+DP V RNYG +LVE I PDG+V FF
Sbjct: 480 YGMSLARNCFLPMVVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSKITPDGLVAFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ I+++W GIL E+ ++KL+ +ET D ETTLAL+ YR AC GRGAV SVA
Sbjct: 540 SYLYLESIVSSWQSMGILDEVWKYKLILVETPDPHETTLALETYRAACTNGRGAVLLSVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR VIMFG+P+QYT S+
Sbjct: 600 RGKVSEGVDFDHHYGRAVIMFGIPYQYTESR 630
>gi|240976653|ref|XP_002402458.1| DNA repair helicase rad3/xp-D, putative [Ixodes scapularis]
gi|215491179|gb|EEC00820.1| DNA repair helicase rad3/xp-D, putative [Ixodes scapularis]
Length = 758
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/628 (51%), Positives = 452/628 (71%), Gaps = 5/628 (0%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
++ +TV+FPY+ IYPEQYSYMLELK+ LDAKGH +LEMP+GTGKT+ LLSLI SY+ + P
Sbjct: 6 VDGLTVFFPYEYIYPEQYSYMLELKQCLDAKGHGVLEMPSGTGKTVTLLSLILSYIKANP 65
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
KLIYC+RT+ E+EK + EL+ L + + G +L + LSSRKNLC++ V
Sbjct: 66 AMVSKLIYCSRTLPEIEKVVEELRRLLKHYHKETGEDMNVLGLCLSSRKNLCIHPEVSKE 125
Query: 125 ENRDSVDAACRKRTAS-WVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAF 183
+ VD C TA ++R + + +N++ +LP GVY+L DL+ +
Sbjct: 126 RDGHVVDGKCYLLTAPIYIRKSYRWDVVVTFRPVLQNFDAHGREFILPTGVYSLDDLKEY 185
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G + +CPYF AR V A VVVYSY YLLDPK+A ++SKEM + SVV+FDEAHNIDNVC
Sbjct: 186 GMEHQYCPYFTARQAVLHATVVVYSYHYLLDPKIADLVSKEMTRSSVVIFDEAHNIDNVC 245
Query: 244 IEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADA 303
IE++SV + ++T++G++ N+ + Q I+ K DA +L+ EY RLVEGL DA
Sbjct: 246 IESMSVRINKRTIDGSSENIDTLEQTIKELKEQDAEKLKDEYERLVEGLRDANVARETDA 305
Query: 304 WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITA 363
L+NP LP ++L+EAVPGNIR AEHF+ LRRL++Y++ RL ++V +E P +F+ I
Sbjct: 306 ILANPILPDEVLQEAVPGNIRLAEHFVAFLRRLLEYVKMRLRVQHVVQESPAAFLRDILH 365
Query: 364 HAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDE 423
I++K LRFC ER+ S++ TLEI D F + +C FATLV TYT+GF++I+EP+D+
Sbjct: 366 KVCIERKPLRFCSERMRSMVKTLEIADPTNFSAVIKLCSFATLVSTYTKGFTLIVEPYDD 425
Query: 424 RMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKM 483
R P +P+PVL LSC DAS+A+KPVF+RFQSV+ITSGTLSP+D+YP++L+F PV+S SF +
Sbjct: 426 RTPGVPNPVLNLSCMDASIAIKPVFNRFQSVIITSGTLSPVDMYPKILDFRPVISASFTI 485
Query: 484 SLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYS 543
+L R ICPM++++G+DQ+ +++KF+ R D V RNYG LLVE+ S VPDG+VCFF SY
Sbjct: 486 TLARPSICPMIVSKGNDQVAMTSKFETRDDIAVVRNYGTLLVEVASSVPDGVVCFFTSYM 545
Query: 544 YMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGK 603
Y++ ++A+W + G++ +I + KL+FIETQD ET+LAL NY KAC+ GRGAV SVARGK
Sbjct: 546 YLEGVVASWYEQGVIDQIQRRKLLFIETQDAAETSLALVNYIKACENGRGAVLLSVARGK 605
Query: 604 VAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
V+EG+DF G+ V+MFG+PF YT S+
Sbjct: 606 VSEGVDF----GKAVLMFGIPFVYTQSR 629
>gi|391325164|ref|XP_003737109.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit-like [Metaseiulus
occidentalis]
Length = 762
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/633 (50%), Positives = 453/633 (71%), Gaps = 6/633 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + V FPYD IYPEQYSYMLELK+ LDAKGH +LEMP+GTGKT LLSLI +Y
Sbjct: 1 MKVNVDGLEVLFPYDFIYPEQYSYMLELKQCLDAKGHGVLEMPSGTGKTATLLSLILAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRH--LGPAAKILAIGLSSRKNLCVN 118
+ P KL+YC+RT+ E+EK + E++ L Y + + + IL + L+SRKNLC++
Sbjct: 61 KAYPSVISKLVYCSRTMPEIEKVVEEVRRLREYYKKEAFISSSNDILGLCLTSRKNLCLH 120
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
+ ++ VDA C T+++ R E ETC FFE+++ +LPPGVY +
Sbjct: 121 PAISEEKDGRVVDAKCYAFTSAYKRGEEGE----ETCTFFESFDTHGREMLLPPGVYGID 176
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
DL+ +G++ WCPYF ARH + ANVV+YSY YLLDPK+A I+SKE+ SVVVFDEAHN
Sbjct: 177 DLKEYGQRHHWCPYFTARHAIMHANVVIYSYHYLLDPKIADIVSKELNSNSVVVFDEAHN 236
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCI+++SV++ ++ ++ NL + + + TDA +L+ EY +LV+GL +
Sbjct: 237 IDNVCIDSMSVTISKKMMDVINANLVVVENRVRHIRQTDASQLQEEYQKLVDGLRVAQQA 296
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
D + NP LP ++L+EA+PG+IR AEHF LRRL +Y++ R+ T++V +E P +F+
Sbjct: 297 RETDIIMPNPVLPDEVLQEAIPGSIRTAEHFTAFLRRLYEYVKHRMRTQHVVQESPAAFL 356
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
I I++K LRFC ERL SL+ +LEI+D F + +C FATL+ TYT+GF++II
Sbjct: 357 KDICKQVCIERKPLRFCAERLSSLLRSLEISDVANFSPLVRMCHFATLISTYTKGFTLII 416
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EP+D+R P+IP+ LQLSC DAS+A++PVF RFQSV+ITSGTLSP+++YP++LNFHP+V
Sbjct: 417 EPYDDRTPNIPNCTLQLSCMDASIAIRPVFHRFQSVIITSGTLSPLEMYPKILNFHPIVM 476
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCF 538
SF M+L R ICP+V+++G+DQ+ +S++++ R D V RNYG L+VEM ++VPDG+V F
Sbjct: 477 ASFTMTLARPSICPIVISKGNDQVAISSRYENRDDIAVIRNYGNLIVEMSAVVPDGLVVF 536
Query: 539 FVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS 598
F SY Y++ ++A W + GI+ +I++ KL+FIETQD ET+LAL +Y KA + GRGAV S
Sbjct: 537 FTSYQYLENVVALWYEQGIVDQILRKKLLFIETQDSAETSLALLHYVKAVESGRGAVLLS 596
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
VARGKV+EG+DFD H GR V+MFG+P+ +T S+
Sbjct: 597 VARGKVSEGVDFDHHLGRAVLMFGIPYVFTQSR 629
>gi|170087262|ref|XP_001874854.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650054|gb|EDR14295.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 759
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/642 (51%), Positives = 456/642 (71%), Gaps = 13/642 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ + FPYD IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFFIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHL-GPAAK-----ILAIGLSSRKN 114
P KL+YC+RTV E+EK LAELK L Y+ H P K + +GL+SRKN
Sbjct: 61 QFYPTR-RKLVYCSRTVPEIEKALAELKRLMAYRISHAETPEEKEKERSFMGMGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPN-IETCEFFENYEKAASAAVLPPG 173
LC++ + + VDA CR T + V +P+ +E C + E K ++P G
Sbjct: 120 LCIHPEISKEKKGRVVDARCRDLTNAAVCEKGRADPDSVELCSWHEELGKLEPGNLIPQG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHM--VQFANVVVYSYQYLLDPKVAGIISKEMQKESVV 231
++TL D+ +G+ +G CPYF R M + FA+V++YS+ YLLDPKVA +SKEM K+++V
Sbjct: 180 IWTLADILEYGRDKGVCPYFAVRRMASMAFADVIIYSFHYLLDPKVAEQVSKEMSKDAIV 239
Query: 232 VFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIER--FKATDAGRLRAEYNRLV 289
VFDEAHNIDNVCIE+LS+ + R L+ ATR++ ++ ++IE K TDA +L+ EY +LV
Sbjct: 240 VFDEAHNIDNVCIESLSIDLTRPMLDSATRSVVKLGEKIEEQVIKITDAAKLQDEYAKLV 299
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
EGL G DA++ NP LP D+L EAVPGNIR+AEHF+ L+R V+YL+ R+ +V
Sbjct: 300 EGLQEPGG-EDGDAFMGNPLLPEDLLNEAVPGNIRKAEHFVAFLKRFVEYLKTRMRVLHV 358
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
E P+SF+ + I+++ LRFC ERL SL+ TLE+ DE+ +Q + FATLV T
Sbjct: 359 VAETPLSFLQHLKDITYIERRPLRFCAERLQSLIRTLELNRLDEYASLQKVASFATLVST 418
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
Y +GF +I+EPF+ +P+P+ +C D SLA+KPVF+RF SVVITSGTLSP+D+YP+
Sbjct: 419 YEKGFLLILEPFETDNATVPNPIFHFTCLDPSLAIKPVFERFSSVVITSGTLSPLDMYPK 478
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
+L F PVV ++ M+LTR+ P+V+TRGSDQ+ +S++F++R+DP V RN+G +L+E
Sbjct: 479 MLQFTPVVQETYPMTLTRNAFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGSILIEYSK 538
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
IVPDGIV FF SY YM+ I+A WND GIL E+ ++KL+F+ET D ET++AL+NYR+ACD
Sbjct: 539 IVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWKNKLIFVETPDANETSIALENYRRACD 598
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGAV SVARGKV+EGIDFD +YGR VIMFGVP+QYT S+
Sbjct: 599 NGRGAVLLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTESR 640
>gi|169853182|ref|XP_001833272.1| transcription factor TFIIH complex subunit Rad15 [Coprinopsis
cinerea okayama7#130]
gi|116505650|gb|EAU88545.1| transcription factor TFIIH complex subunit Rad15 [Coprinopsis
cinerea okayama7#130]
Length = 789
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/638 (50%), Positives = 452/638 (70%), Gaps = 9/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ + FPYD IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFYIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA------KILAIGLSSRKN 114
P KL+YC+RTV E+EK L ELK L Y+ + + +GL+SRKN
Sbjct: 61 QFFPTRR-KLVYCSRTVPEIEKALTELKRLMKYRIDYAETEEEKEKERNFMGLGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC+N V + VDA CR T + V ENP ++ C++ EN K ++P G
Sbjct: 120 LCINPDVAREKKGTVVDARCRDLTNTAVCEKNRENPGSVPVCDWHENLGKMEPGTLIPQG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++TL+ + + +Q+ CPYF R M+ FA++V+YSY YLLDPKVA +SK++ K+++VVF
Sbjct: 180 IWTLEGVLEYARQKVICPYFAVRRMMGFADIVIYSYHYLLDPKVAEQVSKDISKDAIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ A R++++++++I+ K TDA +L+ EY +LVEGL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSAARSVTKLSEKIDEIKTTDAAKLQNEYAKLVEGLQ 299
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
D + NP LP D+L EA+PGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 -EAEESDTDGIMGNPVLPDDLLHEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVTHVVAET 358
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
P+SF+ + I+++ LRFC ERL SL+ TLE+ DE+ +Q + FATLV TY +G
Sbjct: 359 PLSFLQHLKDITYIERRPLRFCAERLQSLVRTLELNRLDEYSSLQKVASFATLVATYEKG 418
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
F +I+EP++ + +P+ L+C D SLA+KPVF+RF SVVITSGT+SP+D+YP++L F
Sbjct: 419 FLLILEPYETDTSTVANPIFHLTCLDPSLAIKPVFERFSSVVITSGTISPLDMYPKMLQF 478
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
PVV ++ M+LTR+ P+V+TRGSDQ+ +S++F++R+DP V RN+G +LVE IVPD
Sbjct: 479 TPVVQETYPMTLTRNAFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGSILVEYSKIVPD 538
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
G+V FF SY YM+ I+A WND GIL E+ +HKL+F+ET D ET++AL+NYR+ACD GRG
Sbjct: 539 GVVAFFPSYLYMESIVAAWNDMGILNEVWKHKLIFVETPDANETSIALENYRRACDNGRG 598
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AV SVARGKV+EGIDFD +YGR VIMFGVP+QYT S+
Sbjct: 599 AVLLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTESR 636
>gi|290983090|ref|XP_002674262.1| DNA repair helicase UVH6 [Naegleria gruberi]
gi|284087851|gb|EFC41518.1| DNA repair helicase UVH6 [Naegleria gruberi]
Length = 753
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/620 (54%), Positives = 434/620 (70%), Gaps = 32/620 (5%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
MP+GTGKTI+LLSLITSY L++ KLIYCTRTV EMEK L EL L Y+ ++
Sbjct: 1 MPSGTGKTISLLSLITSYQLTEEGKSRKLIYCTRTVPEMEKVLEELGSLIEYRKKYTD-- 58
Query: 102 AKILAIGLSSRKNLCVNSRVLA-AENRDSVDAACRKRTASWVRALAAEN----------- 149
+ I+ +GLSSRKNLC++ + + + VD+ CR TASW+RA A E
Sbjct: 59 SPIIGVGLSSRKNLCIHPKSQSFLHDGAQVDSVCRGLTASWLRAEAKEKVESSNGTIQPV 118
Query: 150 ----------PNIETCEFFENY-EKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHM 198
+IE C +FE + E + +LP GVYT++DL+ FGK++GWCPYFL+R
Sbjct: 119 ISNNNATATVDDIELCNYFERFIEANPTDTILPNGVYTMRDLKVFGKKKGWCPYFLSRRA 178
Query: 199 VQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEG 258
+++ANVVVYSY YLLDPK++ IISK + S+VVFDEAHNIDNVCIEALS+++ R L
Sbjct: 179 IEYANVVVYSYSYLLDPKISSIISKNLPANSIVVFDEAHNIDNVCIEALSINIDRDILGV 238
Query: 259 ATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGN------LPIADAWLSNPALPS 312
A NL+++ + I + ++ RL+ EY RLV+GL G + D LSNP LP
Sbjct: 239 AKSNLTKLEENIANMEKVNSQRLQEEYRRLVDGLGAVGVGRSSDVIRSDDELLSNPVLPG 298
Query: 313 DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTL 372
DI+ EAVPGNIR+A HF+ ++R ++ RL+T+ E P F+ + + ID ++L
Sbjct: 299 DIMTEAVPGNIRKAHHFVKFMKRFATHVNKRLQTQKSVNETPEQFLNHVLENIDIDSRSL 358
Query: 373 RFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPV 432
RFC ERL SLM TLEI + EF I+ I DFATL+GTY GF IIIEP D R P PDPV
Sbjct: 359 RFCSERLLSLMNTLEIKNIYEFNGIKIIMDFATLIGTYQEGFVIIIEPHDPRTPTNPDPV 418
Query: 433 LQLSCHDASLAV-KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
LQ SC DASLA+ KP+F RF++VV+TSGTLSP+D+YP+LL F P++S+S +M+LTR+CIC
Sbjct: 419 LQFSCMDASLAISKPIFGRFKTVVLTSGTLSPLDMYPKLLKFKPIISKSLEMTLTRECIC 478
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
P+VLTRGSDQ+ V+TK+ R+D V RNYG LL+E+ +PDGIVCFF SY YM++I++
Sbjct: 479 PLVLTRGSDQVAVTTKYRFRNDASVQRNYGSLLLELSKYIPDGIVCFFTSYQYMEDIVSF 538
Query: 552 WNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFD 611
WN G+L I HKLVFIET + ET +AL+NYRKACDCGRGA+FFS+ARGKVAEGIDFD
Sbjct: 539 WNSVGLLSSITNHKLVFIETPNTAETAIALENYRKACDCGRGAIFFSIARGKVAEGIDFD 598
Query: 612 RHYGRLVIMFGVPFQYTLSK 631
HYGR V+M GVPFQ T SK
Sbjct: 599 GHYGRCVVMIGVPFQNTESK 618
>gi|328855625|gb|EGG04750.1| hypothetical protein MELLADRAFT_108080 [Melampsora larici-populina
98AG31]
Length = 795
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/646 (51%), Positives = 452/646 (69%), Gaps = 20/646 (3%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MIF ++D+ + FPYD IYPEQ M +LKR LD GHC+LEMP+GTGKTI+LLSLI +Y
Sbjct: 1 MIFNIDDLEIIFPYDKIYPEQ---MSDLKRTLDVGGHCVLEMPSGTGKTISLLSLIVAYQ 57
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHL---------GPAAK--ILAIGL 109
+ PE KL+YC+RTV E+EK L ELK L Y+ L GP L IGL
Sbjct: 58 QNHPEKR-KLVYCSRTVPEIEKALIELKRLMAYRASQLRLRAELTNAGPIEDEDFLGIGL 116
Query: 110 SSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAA 168
+SRKNLC++ V + VDA CR T++W NP ++ CEF E + +
Sbjct: 117 TSRKNLCIHPDVSREKKGKVVDARCRDLTSAWACEQGRANPGSVPLCEFHEKLGELEAGD 176
Query: 169 VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
++P GV+TL+++ +G QQG CPYF R M+ +A+VV+YS+ YLLDPKVA +SKE+
Sbjct: 177 LIPRGVWTLEEITNYGHQQGICPYFAVRRMLAYADVVIYSFHYLLDPKVATQVSKEISPN 236
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRL 288
S+VVFDEAHNIDNVCIE+LS+ + + L+ A R + + +I+ K TDA +L+ EY RL
Sbjct: 237 SIVVFDEAHNIDNVCIESLSIDLNKSILDNAGRAIENLEVKIQEIKRTDASKLQNEYQRL 296
Query: 289 VEGLALRGNLPIAD---AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLE 345
V GL L A+ ++ P LP D+L+EA+PGNIRRAEHF L R V+YL+ R+
Sbjct: 297 VRGLQ-GSELEQAEDEAGVIATPVLPDDLLQEAIPGNIRRAEHFTAFLTRFVEYLKTRMR 355
Query: 346 TENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFAT 405
+V E P+SF+ + ID+K LRFC ERL SL+ TLE+T D++ +Q + FAT
Sbjct: 356 VLHVVAETPLSFLQHLKDLTFIDRKPLRFCSERLTSLIRTLELTQLDQYNGLQQVASFAT 415
Query: 406 LVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID 465
LV TY +GF +I+EPF+ +P+PV L+C DASLA+KPVFDRF SVVITSGT+SP+D
Sbjct: 416 LVATYEKGFLLILEPFETENATVPNPVFHLTCLDASLAIKPVFDRFSSVVITSGTISPLD 475
Query: 466 LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLV 525
+YP++L F V S+ M+LTR+C P+V+TRG+DQ+ +S++F++R+DP V RN+G +L+
Sbjct: 476 MYPKMLGFESAVQESYSMTLTRNCFLPLVITRGADQVAISSRFEVRNDPSVVRNFGTVLI 535
Query: 526 EMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYR 585
+ IVPDGIV FF SY YM+ I+A W+D GILKE+ ++KL+F+ET D VET++AL+NYR
Sbjct: 536 DYCKIVPDGIVAFFPSYLYMESIVAAWHDMGILKEVWKYKLIFVETPDAVETSIALENYR 595
Query: 586 KACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+ACD G+GAV SVARGKV+EGIDFD +YGR VIMFG+P+QYT S+
Sbjct: 596 RACDNGKGAVLLSVARGKVSEGIDFDHNYGRAVIMFGIPYQYTESR 641
>gi|384496850|gb|EIE87341.1| hypothetical protein RO3G_12052 [Rhizopus delemar RA 99-880]
Length = 675
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/605 (53%), Positives = 435/605 (71%), Gaps = 16/605 (2%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
MP+GTGKT++LLSLI +Y + PE KL+YC+RTV E++K L ELK L Y+ R G
Sbjct: 1 MPSGTGKTVSLLSLIVAYQMQYPEKHRKLVYCSRTVPEIDKALGELKRLMEYR-RDQGIQ 59
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA---------------LA 146
+ IGL+SRKNLC+N V SVD+ CR TASWVRA +
Sbjct: 60 EEFFGIGLTSRKNLCLNPDVSKERKGRSVDSKCRNLTASWVRAKVVKRRPEQEQDGDAME 119
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
+ + C+F+E E A S +P G+YTL+DL+A+G++ +CPY+L R + FANV++
Sbjct: 120 VDQSPVPLCDFYEQLEAANSPNPIPNGIYTLEDLKAYGRKMRYCPYYLVRRAIPFANVII 179
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
YSY Y+LDPKVA ++S+E+ K+S+VVFDEAHNIDNVCIE+LS+ + R L+ + R+++ +
Sbjct: 180 YSYHYMLDPKVAELVSRELSKDSIVVFDEAHNIDNVCIESLSIDLTRPMLDASARSITVL 239
Query: 267 NQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRA 326
+++IE K TDA RL+ EY +LVEGL + D ++++P LP D+LKEAVPGNIRRA
Sbjct: 240 SEKIEEIKNTDAERLKNEYTKLVEGLRDANSARDEDTFMASPILPDDLLKEAVPGNIRRA 299
Query: 327 EHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386
EHF+ LRR ++YL+ RL +V E P SF+ + I++K LRFC ERL SL+ TL
Sbjct: 300 EHFVAFLRRFIEYLKTRLRVMHVVAETPASFLQHLKDVTYIERKPLRFCAERLSSLVRTL 359
Query: 387 EITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKP 446
E+TD + F +Q + FATL TY +GF +I+EPF+ IP+PVL +C DAS+A+KP
Sbjct: 360 ELTDLEHFSSLQKVAAFATLTSTYDKGFLLILEPFEHETATIPNPVLHFTCLDASIAIKP 419
Query: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVST 506
VFDRF +VVITSGTLSP+D+YP++LNF VV S+ M+L+R+C PMV+TRGSDQ+ VS+
Sbjct: 420 VFDRFSTVVITSGTLSPLDMYPKMLNFEAVVQESYSMTLSRNCFLPMVITRGSDQVAVSS 479
Query: 507 KFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKL 566
KF++R+DP V RN+G+++VE IVPDG+VCFF SY YM+ I++ WND GIL E ++KL
Sbjct: 480 KFEVRNDPAVVRNFGQIMVEFAKIVPDGVVCFFPSYLYMESIVSMWNDMGILNEAWKYKL 539
Query: 567 VFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626
+F+ET D ET+LAL NYRKACD GRGA+ SVARGKV+EGIDFD +YGR VIMFG+P+Q
Sbjct: 540 IFVETPDAAETSLALANYRKACDNGRGAILLSVARGKVSEGIDFDHNYGRAVIMFGIPYQ 599
Query: 627 YTLSK 631
YT S+
Sbjct: 600 YTESR 604
>gi|213402977|ref|XP_002172261.1| DNA repair helicase RAD3 [Schizosaccharomyces japonicus yFS275]
gi|212000308|gb|EEB05968.1| DNA repair helicase RAD3 [Schizosaccharomyces japonicus yFS275]
Length = 773
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/631 (51%), Positives = 443/631 (70%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM +LK++LD G LLEMP+GTGKTI+LLSLI SY
Sbjct: 1 MKFYIDDLPVIFPYPRIYPEQYQYMCDLKKSLDVGGVALLEMPSGTGKTISLLSLIISYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE KLIYC+RT+ E++K LAELK L Y+ + LG L +GL+SRKNLC++
Sbjct: 61 QFYPEQR-KLIYCSRTMSEIDKALAELKRLMAYREKELGRREPFLGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +N + VDA CR TA +V+ ++E C+F EN E A++P GV+TL DL
Sbjct: 120 VRREKNGNVVDARCRALTAGFVKEKKLAGMDVELCDFHENLEDLEPHALVPEGVWTLDDL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF AR M+ F NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 TEYGQKTTRCPYFSARRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A+R ++ + +++ K DAG+L+ EY +LV+GL
Sbjct: 240 NVCIESLSIDLTESSLRKASRGITALERKVAEVKQVDAGKLQDEYRKLVQGLREADEASQ 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ V E P SF+
Sbjct: 300 EQQFMSNPVLPEDVLKEAVPGNIRRAEHFIAFLKRFIEYLKTRMKVLYVIAETPASFLQH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ D+F +Q I FATLV TY RGF +I+EP
Sbjct: 360 MKDLTFIERKPLRFCAERLTSLVRTLELPIVDDFHSLQQIATFATLVATYERGFVLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ +P+PVL +C DAS+A+KPVFD+F+SV+ITSGTLSP+++YP++L F V+ S
Sbjct: 420 YETENATVPNPVLHFACLDASIAIKPVFDKFRSVIITSGTLSPLNMYPKMLQFETVMMES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ MSL R+ PMV+TRGSDQ+ +S+KF+ R+DP + RNYG +L+E PDG+V FF
Sbjct: 480 YGMSLARNSFLPMVITRGSDQVAISSKFEARNDPSIVRNYGNILIEFSKTTPDGLVAFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ I+++W GIL E+ ++KL+ +ET D ETTLAL+ YR AC GRGAV SVA
Sbjct: 540 SYLYLESIVSSWQSMGILDEVWKYKLILVETPDAQETTLALETYRAACCNGRGAVLLSVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD YGR VIMFG+P+QYT S+
Sbjct: 600 RGKVSEGVDFDHQYGRTVIMFGIPYQYTESR 630
>gi|321249881|ref|XP_003191608.1| general RNA polymerase II transcription factor [Cryptococcus gattii
WM276]
gi|317458075|gb|ADV19821.1| general RNA polymerase II transcription factor, putative
[Cryptococcus gattii WM276]
Length = 799
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/633 (51%), Positives = 447/633 (70%), Gaps = 4/633 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F L D+ V FPYD +YPEQYSYM +LK LDA GHC+LEMP+GTGKT++LLSLI +Y+
Sbjct: 1 MKFMLGDLPVLFPYDRLYPEQYSYMADLKTTLDAGGHCVLEMPSGTGKTVSLLSLIIAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
P N KLIYC+RTV E+EK LAELK L Y+ +GL+SR+NLC++
Sbjct: 61 QFYP-NKRKLIYCSRTVPEIEKALAELKRLMAYRADMGANDGNFRGLGLTSRRNLCLHPE 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPGVYTLQD 179
V + VD+ CR T+++ +P ++ C F E ++PPGVYTL D
Sbjct: 120 VSKEKKGKVVDSRCRDLTSAYACEKGRADPGSVPLCSFHEELNNYEPGNLIPPGVYTLDD 179
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
++ +G+++G CPYF R M+ F +VV+YS+ YLLDPKVA +S EM KES+VVFDEAHNI
Sbjct: 180 VKKYGQEKGVCPYFTIRRMLPFLDVVIYSFHYLLDPKVAEQVSAEMSKESIVVFDEAHNI 239
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCIE+LS+ + R L+ A R+++++N +I K TDA +L EY +LVEGL N+
Sbjct: 240 DNVCIESLSIDLTRPMLDSAARSVNKLNDKIAEIKETDAKKLEDEYAKLVEGLQ-EANVS 298
Query: 300 IADA-WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
D L +P L D++ EAVPGNIR+AEHF+ L+R ++YL+ R+ +V E P SF+
Sbjct: 299 AEDEDMLVSPVLSKDMVDEAVPGNIRKAEHFIAFLKRFIEYLKTRMRVLHVVAETPQSFL 358
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
A + I+Q+ L+F ERL SL+ TLE+T+ +E +Q + F TLV TY +GF +I+
Sbjct: 359 AHLKEITYIEQRPLKFASERLTSLVRTLELTNLEEHSALQKVAGFGTLVATYEKGFLLIL 418
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EP++ +P+P+ +C D SLA+ PVFDRF SVVITSGT+SP+D+YP++L F PV+
Sbjct: 419 EPYETEHATVPNPIFHFTCLDPSLAIAPVFDRFASVVITSGTISPLDMYPKMLQFQPVME 478
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCF 538
+S+ M+LTR+ PMV+TRGSDQ+P+S++F++R+DP V RN+G +L+EM VPDG+V F
Sbjct: 479 QSYPMTLTRNAFLPMVITRGSDQVPISSRFEVRNDPAVVRNFGSILIEMARTVPDGVVAF 538
Query: 539 FVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS 598
F SY YM+ I++ W D GIL E+ +HKL+F+ET D +ET++AL NYR+AC+ GRGAV S
Sbjct: 539 FPSYLYMESIVSAWYDMGILSEVWKHKLLFVETPDAMETSIALRNYREACNNGRGAVLLS 598
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
VARGKV+EGIDFD +YGR VIMFG+P+QYT S+
Sbjct: 599 VARGKVSEGIDFDHNYGRAVIMFGIPYQYTESR 631
>gi|340376021|ref|XP_003386532.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Amphimedon queenslandica]
Length = 754
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/631 (49%), Positives = 439/631 (69%), Gaps = 3/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + V FPY+ +YPEQY+YML+LKR LDAKGHC+LEMP GTGKT++LL+LI +Y
Sbjct: 1 MKINIDGLLVIFPYEYVYPEQYTYMLDLKRTLDAKGHCVLEMPCGTGKTVSLLALIIAYH 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
++ P + KLIYC+RTV E+ K ++ELK L + G +L + LSSRKNLC++
Sbjct: 61 MAHPHHIQKLIYCSRTVQEINKAMSELKRLLDAYKSEFGSTPNVLGVALSSRKNLCIHPM 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
+ + VD C K TAS+VR + + C+FFE ++ L PGVY + DL
Sbjct: 121 IAGNKEGKLVDTECYKLTASFVREKHKADKSTPVCQFFEEFDVKGRVDPLKPGVYDMDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
++ G+ +GWCPY+LAR+ + A V++YSY YLLDPK+A I+SK + ++SVVVFDEAHNID
Sbjct: 181 KSLGQTKGWCPYYLARYTLGHATVIMYSYHYLLDPKIAEIVSKGLPQQSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE++S+++ R+TLE T N IN + + RLR EY RLVEGL
Sbjct: 241 NVCIESMSITIGRKTLEKCTAN---INNLQAKLRELGEERLRQEYQRLVEGLRRAREERE 297
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP D+L+EA+PGN+RR EHFL ++R +YL+ RL +V E P F+ +
Sbjct: 298 NDIQLANPVLPDDVLQEALPGNMRRGEHFLLFMKRFAEYLKSRLLARHVVSETPKYFLQN 357
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I + ID+K LRFC ERLH ++ TL++ + ++ I + +FATLV TYT GFS+IIEP
Sbjct: 358 IYSTVCIDRKPLRFCSERLHFMLQTLQLLELSDYSAITKVANFATLVSTYTEGFSLIIEP 417
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD R P I +P+L SC DA +A+KPVFD + SV++TS T+SP+D+YPRLL F P + S
Sbjct: 418 FDNRAPTIFNPILHFSCMDAGIAIKPVFDHYTSVILTSATISPLDMYPRLLRFQPALLSS 477
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ +SL R CICP+++ RG+DQ+ ++TKF+ R D + RNYG ++VE+ S++PDGIV FF
Sbjct: 478 YGISLARPCICPIIVARGNDQVSITTKFEERGDTAIIRNYGNVVVELSSVIPDGIVAFFP 537
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM++ + W D G++ +I ++KLVF+ET D E +AL+NYRKAC+ GRGA+ SV
Sbjct: 538 SYEYMEQTVHEWVDQGLMSKIQRNKLVFVETVDNAEMNMALNNYRKACENGRGALLLSVV 597
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD HYGR VIM G+P+ YT S+
Sbjct: 598 RGKVSEGVDFDHHYGRAVIMIGIPYVYTQSR 628
>gi|336364077|gb|EGN92441.1| hypothetical protein SERLA73DRAFT_99245 [Serpula lacrymans var.
lacrymans S7.3]
Length = 793
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/639 (50%), Positives = 452/639 (70%), Gaps = 9/639 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ + FPYD IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFFIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQT------RHLGPAAKILAIGLSSRKN 114
P KLIYC+RTV E+EK LAELK L Y+ +GL+SRKN
Sbjct: 61 QFYPTRR-KLIYCSRTVPEIEKALAELKRLVEYRISCAETPEEKEKEQNFTGLGLTSRKN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC++ V + VDA CR T + V A ++P +++ C++ EN + ++ PG
Sbjct: 120 LCIHPEVSKEKKGKVVDARCRDLTNTAVCEKARQDPGSVDICDWHENLGQLEPGNLITPG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++TL D+ G+ CPYF R M+ F +VV+YS+ YLLDPKVA +SKE+ K+++VVF
Sbjct: 180 IWTLADVLQHGRDNKLCPYFTIRRMMPFVDVVIYSFHYLLDPKVAEQVSKELSKDAIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ A R+++++ ++IE K TDA +L+ EY +LVEGL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSAARSVTKLGEKIEEIKTTDAAKLQDEYAKLVEGLE 299
Query: 294 LRGNLPI-ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKE 352
+ D ++SNP LP D+L EA+PGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 EPASEAADEDNFMSNPVLPDDLLNEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAE 359
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
P+SF+ + I+++ LRFC ERL S++ TLE+ DE+ +Q + FATLV TY +
Sbjct: 360 TPLSFLQHLKDITYIERRPLRFCAERLQSMIRTLELNRLDEYSSLQKVASFATLVATYEK 419
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
GF +I+EPF+ +P+P+ +C D SLA+KPVF+RF SVVITSGT+SP+D+YP++L
Sbjct: 420 GFLLILEPFETDNATVPNPIFHFTCLDPSLAIKPVFERFSSVVITSGTISPLDMYPKMLQ 479
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
F PVV ++ M+LTR+ P+V+TRGSDQ+ +S++F++R+DP V RN+G +L+E IVP
Sbjct: 480 FTPVVQETYPMTLTRNAFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGSILIEYSKIVP 539
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR 592
DGIV FF SY YM+ I+A WND GIL E+ ++KL+F+ET D ET++AL+NYR+ACD GR
Sbjct: 540 DGIVAFFPSYLYMESIVAAWNDMGILNEVWKNKLIFVETPDANETSIALENYRRACDNGR 599
Query: 593 GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GAV SVARGKV+EGIDFD +YGR VIMFGVP+QYT S+
Sbjct: 600 GAVLLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTESR 638
>gi|440635897|gb|ELR05816.1| DNA repair helicase rad15 [Geomyces destructans 20631-21]
Length = 795
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/631 (51%), Positives = 440/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFNIDDLPVLFPYPRIYPEQYAYMCDLKRTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L NY+T LG + +GL+SRKNLC++
Sbjct: 61 QYYPEHR-KLIYCSRTMSEIEKALAELKALMNYRTEQLGRVEEFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + EN + ++P GV+TL +
Sbjct: 120 VKREKSGAIVDARCRSLTAGFVKDKKENGEDVELCTYHENLDLLEPHDLIPNGVWTLDGI 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF +R M+ F NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNID
Sbjct: 180 MRYGEEHKQCPYFTSRRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS + +L ATR + +I K TDA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSTDITEDSLRKATRGAQNLETKICEIKDTDAEKLQNEYAKLVEGLREADEARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++SNPALP D+LKEAVPGNIRRAEHF+ L+R V+YL+ R+ V E P+SF+A
Sbjct: 300 EDTFMSNPALPDDLLKEAVPGNIRRAEHFVAFLKRFVEYLKTRMRVRQVISETPLSFLAH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 LKETTFIERKPLRFCAERLTSLVRTLELTNIEDYQPLQQVATFATLVATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ +P+PVL +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++LNF VV +
Sbjct: 420 YESDTAEVPNPVLHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLNFTTVVQET 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
++M+L R PM++TRGSDQ+ +S+ F +R++P V RNYG LL E I PDG+V FF
Sbjct: 480 YQMTLARRSFLPMIVTRGSDQVAISSGFQVRNEPSVVRNYGNLLTEFSKITPDGMVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL E+ ++KL+ +ET D ET+LAL+ YR AC GRGA+ VA
Sbjct: 540 SYLYMESIISMWQGMGILDEVWKYKLILVETPDAQETSLALETYRTACCNGRGAILLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHQYGRTVLCIGVPFQYTESR 630
>gi|405958071|gb|EKC24234.1| TFIIH basal transcription factor complex helicase subunit
[Crassostrea gigas]
Length = 1184
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/673 (50%), Positives = 452/673 (67%), Gaps = 44/673 (6%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
++ + VYFPYD IYPEQY YMLELK++LDAKGHC LEMP+GTGKTI+LLSLI +Y+ +
Sbjct: 383 LNIDGLLVYFPYDYIYPEQYMYMLELKKSLDAKGHCALEMPSGTGKTISLLSLIVAYMKA 442
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA-KILAIGLSSRKNLCVNSRV 121
P KLIYC+RTV E+EK +AELK L +Y + LG KIL + LSSRKNLC+N V
Sbjct: 443 NPLEVTKLIYCSRTVPELEKVVAELKNLMDYYEQQLGKGKPKILGLALSSRKNLCINPEV 502
Query: 122 LAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP---GVYTLQ 178
+ +VDA C K TAS+VRA + + C F+E+Y+ LP G+ T
Sbjct: 503 SQERDGKNVDALCHKLTASFVRANHKRDATVPVCSFYESYDAHGKEMPLPEGVYGLITHA 562
Query: 179 DLRAFGKQQGWCPYF---LARHMVQFANVV------------------------------ 205
++ + P +++ + + A VV
Sbjct: 563 NIVVYSYYYLLDPKIAEVVSKELSKNAVVVFDEAHNIDNVCIESMSIKITRRTLDKCQQN 622
Query: 206 -------VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEG 258
+ SY YLLDPK+A ++SKE+ K +VVVFDEAHNIDNVCIE++S+ + R+TL+
Sbjct: 623 IDGLSKQIQSYYYLLDPKIAEVVSKELSKNAVVVFDEAHNIDNVCIESMSIKITRRTLDK 682
Query: 259 ATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEA 318
+N+ ++++I+R K DA RL+ EY +LV+GL D L+NP LP D+LKEA
Sbjct: 683 CQQNIDGLSKQIQRLKDCDAERLKTEYQKLVQGLRDANIARETDVILANPVLPDDVLKEA 742
Query: 319 VPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYER 378
VPGNIR AEHFL ++R ++Y++ RL ++V E P SF+ I++K LRFC ER
Sbjct: 743 VPGNIRTAEHFLGFMKRFLEYMKIRLRVQHVVSESPPSFLKDCYQKVCIERKPLRFCAER 802
Query: 379 LHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCH 438
L+S+M TLE+ + +F + +C FATLV TY +GF +IIEPFD+R P I +P+L SC
Sbjct: 803 LNSMMRTLELVEIHDFSALSLLCHFATLVSTYAKGFVLIIEPFDDRTPTISNPILHFSCM 862
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRG 498
DAS+A+KPVFDRFQ+VVITSGTLSP+++YPR+L+F PV +F M+L R CICPMV+++G
Sbjct: 863 DASIAIKPVFDRFQTVVITSGTLSPLEMYPRILDFRPVTMATFTMTLARTCICPMVVSKG 922
Query: 499 SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGIL 558
+DQ+ +++K++ R D V RNYG LLVE SIVPDGIVCFF SY YM+ +A W + GIL
Sbjct: 923 NDQVAMTSKYETREDVAVIRNYGNLLVEFCSIVPDGIVCFFTSYIYMESTVAAWYEQGIL 982
Query: 559 KEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLV 618
++ +HKL+FIETQD ET+LAL NY+KAC+ GRGAV SVARGKV+EGIDFD H+GR V
Sbjct: 983 DQVQKHKLLFIETQDAAETSLALLNYQKACENGRGAVLLSVARGKVSEGIDFDHHFGRAV 1042
Query: 619 IMFGVPFQYTLSK 631
IMFG+P+ YT SK
Sbjct: 1043 IMFGIPYVYTQSK 1055
>gi|402592700|gb|EJW86627.1| excision repair cross-complementing rodent repair deficiency
[Wuchereria bancrofti]
Length = 772
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/627 (51%), Positives = 445/627 (70%), Gaps = 1/627 (0%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
++ + VYFPYD IYPEQ YM ELK+ LDAKGHCLLEMP+GTGKT++LLSL+ +Y+L P
Sbjct: 16 VDGLEVYFPYDYIYPEQILYMSELKKTLDAKGHCLLEMPSGTGKTVSLLSLVIAYMLRFP 75
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
++ KL+YC+RT+ E+EK + EL+ L Y + G + A+ LS+RKNLC+N V +
Sbjct: 76 DHLDKLVYCSRTIPEIEKCVEELRNLFKYYEQCDGKPPSLFAVALSARKNLCINESVSSL 135
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFG 184
VD AC+K TAS+VRA P++ C FFE ++ P GVY LQ+LR G
Sbjct: 136 RQGSLVDGACQKLTASFVRAKRRLRPDLPCCAFFEKLDEQKDFNY-PDGVYNLQNLRKLG 194
Query: 185 KQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCI 244
+Q+G CPYFL+R++V A++VVYSY Y+LDPK+A ++SK + S VVFDEAHNIDNVCI
Sbjct: 195 QQRGICPYFLSRNVVDRAHIVVYSYHYILDPKIAELVSKNFSRHSCVVFDEAHNIDNVCI 254
Query: 245 EALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAW 304
E++SVS+ + T+E AT+ L + + ++R + ++ +LR EY+RLVEGL D
Sbjct: 255 ESMSVSLTKTTVEKATQKLGILEEHVQRLREENSEQLRVEYDRLVEGLRRIEEERTNDQI 314
Query: 305 LSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAH 364
L+NP LP ILKEAVPG IR A HF+ LRR +YL+ R+ T+ V E P +F+ +
Sbjct: 315 LANPVLPDMILKEAVPGTIRNALHFISFLRRFNEYLKHRMRTKTVLIESPAAFLRDVNDL 374
Query: 365 AGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDER 424
ID++ LRFC ER SL TLE+ D +F + I +FATLV TY RGF+++IEP DE+
Sbjct: 375 MHIDRRPLRFCAERFASLTRTLELADISDFSSLVLITNFATLVSTYARGFTVVIEPLDEK 434
Query: 425 MPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS 484
L LSC DAS+A++P+F R+ +VVITSGTLSP+D+YP++L+F P + S M+
Sbjct: 435 SGTGHSCTLHLSCMDASVAIRPIFQRYHTVVITSGTLSPLDMYPKILDFDPAIMASLSMT 494
Query: 485 LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSY 544
L R CI P+++++G+DQ+ ++++F+ R D V RNYG L++E+ S+VPDG+V FF SY Y
Sbjct: 495 LARPCIAPLIVSKGNDQVAMTSRFESREDAAVIRNYGSLVLELASLVPDGVVVFFTSYLY 554
Query: 545 MDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKV 604
M+ +I+TW D GI+ E++++KL+FIET D +ET++AL+ Y +ACDCGRGA+FFSVARGKV
Sbjct: 555 MENVISTWYDQGIIDELLKYKLLFIETTDALETSIALEKYVEACDCGRGAIFFSVARGKV 614
Query: 605 AEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+EGIDF H GR VIM GVP+ YT S+
Sbjct: 615 SEGIDFSHHLGRAVIMLGVPYVYTESR 641
>gi|58258935|ref|XP_566880.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans JEC21]
gi|134107057|ref|XP_777841.1| hypothetical protein CNBA5380 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260539|gb|EAL23194.1| hypothetical protein CNBA5380 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223017|gb|AAW41061.1| general RNA polymerase II transcription factor, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 799
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/632 (50%), Positives = 444/632 (70%), Gaps = 2/632 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F L D+ V FPYD +YPEQYSYM +LK LDA GHC+LEMP+GTGKT++LLSLI +Y+
Sbjct: 1 MKFMLGDLPVLFPYDRLYPEQYSYMADLKTTLDAGGHCVLEMPSGTGKTVSLLSLIIAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
P N KLIYC+RTV E+EK LAELK L Y+ +GL+SR+NLC++
Sbjct: 61 QFYP-NKRKLIYCSRTVPEIEKALAELKRLMMYRAEMGANDGDFRGLGLTSRRNLCLHPE 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPGVYTLQD 179
V + VD+ CR T+++ +P ++ C F E ++PPGVYTL D
Sbjct: 120 VSKEKKGKIVDSRCRDLTSAFACEKGRADPGSVPLCSFHEELNNYEPGNLIPPGVYTLDD 179
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
++ +G+++G CPYF R M+ F +V++YS+ YLLDPKVA +S EM KES+V+FDEAHNI
Sbjct: 180 VKKYGQEKGVCPYFTIRRMLPFLDVMIYSFHYLLDPKVAEQVSAEMSKESIVIFDEAHNI 239
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCIE+LS+ + R L+ A R++++++ +I K TDA +L EY +LVEGL
Sbjct: 240 DNVCIESLSIDLTRPMLDSAARSVNKLSDKIAEIKETDAKKLEDEYAKLVEGLQEANERV 299
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
D L +P L D++ EA+PGNIR+AEHF+ L+R ++YL+ R+ +V E P SF+A
Sbjct: 300 EDDDMLVSPVLSKDMVDEAIPGNIRKAEHFIAFLKRFIEYLKTRMRVLHVVAETPQSFLA 359
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
+ IDQ+ L+F ERL L+ TLE+T+ +E +Q + F TLV TY +GF +I+E
Sbjct: 360 HLKEITYIDQRPLKFASERLTCLVRTLELTNLEEHSALQKVAGFGTLVATYEKGFLLILE 419
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
P++ +P+P+ +C D SLA+ PVFDRF SVVITSGT+SP+D+YP++L F PV+ +
Sbjct: 420 PYETEHATVPNPIFHFTCLDPSLAIAPVFDRFASVVITSGTISPLDMYPKMLQFQPVMEQ 479
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
S+ M+LTR+ PMV+TRGSDQ+P+S++F++R+DP V RN+G +L+EM VPDG+V FF
Sbjct: 480 SYPMTLTRNAFLPMVITRGSDQVPISSRFEVRNDPAVVRNFGSILIEMARTVPDGVVAFF 539
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
SY YM+ I++ W D GIL E+ +HKL+F+ET D +ET++AL NYR+AC+ GRGAV SV
Sbjct: 540 PSYLYMESIVSAWYDMGILSEVWKHKLLFVETPDAMETSIALRNYREACNNGRGAVLLSV 599
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ARGKV+EGIDFD +YGR VIMFG+P+QYT S+
Sbjct: 600 ARGKVSEGIDFDHNYGRAVIMFGIPYQYTESR 631
>gi|378732396|gb|EHY58855.1| DNA repair helicase rad15 [Exophiala dermatitidis NIH/UT8656]
Length = 819
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/631 (51%), Positives = 441/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKRTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L Y++ LG +GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALAELKALMKYRSDQLGYVEDFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + +N + ++PPGV+TL L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFVKEKKERGEDVEVCVYHDNLDLLEPHNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF AR M+ F NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNID
Sbjct: 180 IRYGEEHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L ATR + + ++IE KA+D +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKATRGANNLERKIEEMKASDEEKLQNEYQKLVEGLREADEARA 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ V +E P SF++
Sbjct: 300 EDAFMSNPTLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLYVIQETPPSFLSH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY GF +I+EP
Sbjct: 360 LKELTFIERKPLRFCAERLTSLVRTLELTNIEDYQPLQEVATFATLVATYETGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L +C DAS+A+KPVF+RF SV+ITSGT+SP+++YP++LNF V+ S
Sbjct: 420 FETEQATVPNPILHFACLDASIAIKPVFERFSSVIITSGTISPLEMYPKMLNFSTVLQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ MSL R PM++TRGSDQ +++ F RSDPGV RNYG LL E I PDGIV FF
Sbjct: 480 YPMSLARRSFLPMIVTRGSDQQSITSGFQSRSDPGVVRNYGALLFEFAKITPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL +I +KL+ +ET D ET+LAL+ YR AC+ G+GA+ VA
Sbjct: 540 SYLYMEMIISMWQGMGILDQIWTYKLILVETPDAQETSLALETYRTACENGKGAILLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD H+GR V+ G PFQYT S+
Sbjct: 600 RGKVSEGIDFDHHFGRTVLCMGAPFQYTESR 630
>gi|358370846|dbj|GAA87456.1| DNA repair helicase RAD3 [Aspergillus kawachii IFO 4308]
Length = 801
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/631 (50%), Positives = 441/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L ++ + LG A+GL+SRKNLC++
Sbjct: 61 QHYPEH-RKLIYCSRTMSEIEKALAELKALMKFRAKELGHTEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + EN + ++PPGV+TL DL
Sbjct: 120 VKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDDL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF AR M+ F NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 LRYGEEHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L ATR + + ++I K +DA +L+ EY++LVEGL
Sbjct: 240 NVCIESLSIDITEDSLRKATRGANNLERKINEMKTSDAEKLQNEYSKLVEGLQAAEQARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P SF+
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVMHTISETPPSFLTH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 VKDLTYIERKPLRFCAERLTSLVRTLELINIEDYQPLQEVATFATLVATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++L F+ V+ S
Sbjct: 420 FESEAATVPNPVLHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFNAVMQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PMV+TRGSDQ +S+ F +R+DPGV RNYG L++E I PDG+V FF
Sbjct: 480 YSMTLARRSFLPMVVTRGSDQAQISSSFQIRNDPGVVRNYGNLVLEFSRITPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ VA
Sbjct: 540 SYLYMESIISMWQGMGILDSIWNYKLILVETPDAQESSLALETYRTACCNGRGALLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR VI GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRAVINIGVPFQYTESR 630
>gi|357624408|gb|EHJ75192.1| hypothetical protein KGM_19783 [Danaus plexippus]
Length = 736
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/607 (51%), Positives = 431/607 (71%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
MLELKRALDAKGH LLEMP+GTGKTI+LLSLI +Y++ P + KLIYC+RTV E+EK L
Sbjct: 1 MLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYMIQNPHHVRKLIYCSRTVPEIEKVL 60
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
ELK L Y + G + + LSSRKNLC++ V VD C TAS++R
Sbjct: 61 EELKNLIKYYEKSQGEKPSLTGVVLSSRKNLCIHPEVSREREGKLVDGKCHSLTASYIRD 120
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
++P++ C+F+E + + ++LP GVYT+ DL+ +G + WCPYFL+R + A +
Sbjct: 121 RHEQDPSVPICQFYEGFNREGRESMLPYGVYTMDDLKQYGADRNWCPYFLSRFAIIHAEI 180
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A ++SKE+ KE+VVVFDEAHNIDNVCI++LSV + R+T++ +T+ L
Sbjct: 181 VVYSYHYLLDPKIAEVVSKELNKEAVVVFDEAHNIDNVCIDSLSVKITRRTIDKSTQALQ 240
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + + + K D RL EY ++VEGL L +D L NP LP ++L E VPGNIR
Sbjct: 241 TLEKAVSQLKQEDEARLALEYEQMVEGLREAAQLRDSDVILGNPVLPDELLNEVVPGNIR 300
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
A HFL L+R ++YL+ RL ++V +E P F+ +++ I++K LRF RL +LM
Sbjct: 301 NAVHFLGFLKRFIEYLKTRLRIQHVVQESPAGFLKDVSSRVCIERKPLRFVSSRLQTLMK 360
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TL+I D F + + ATLV TYT+GF IIIEPFD++ P + +P+L SC D+S+A+
Sbjct: 361 TLQIPDPSNFGSLTLVAHLATLVSTYTKGFVIIIEPFDDKTPTVSNPILHFSCMDSSIAM 420
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
+PVF RFQ+V+ITSGTLSP+D+YP++L+F+PVV SF M+L R CI PM++++GSDQ+ +
Sbjct: 421 RPVFGRFQTVIITSGTLSPLDMYPKILDFNPVVMSSFTMTLARPCILPMIVSKGSDQVAI 480
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+K++ R D V RNYG+LLVE+ + VPDG+VCFF SY Y++ ++ W D G++ + +H
Sbjct: 481 SSKYETREDVAVIRNYGQLLVEISACVPDGVVCFFTSYLYLESVVGAWYDQGVVANLQKH 540
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+FIETQD ET+ AL NY KAC+ GRGAV SVARGKV+EG+DFD H GR V+MFG+P
Sbjct: 541 KLLFIETQDSAETSFALINYIKACESGRGAVLLSVARGKVSEGVDFDHHLGRAVLMFGIP 600
Query: 625 FQYTLSK 631
+ +T S+
Sbjct: 601 YVFTQSR 607
>gi|295671522|ref|XP_002796308.1| DNA repair helicase RAD3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284441|gb|EEH40007.1| DNA repair helicase RAD3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 797
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/631 (50%), Positives = 439/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
KPE KLIYC+RT+ E+EK LAELK L Y+ + LG +GL+SRKNLC++
Sbjct: 61 QHKPEQR-KLIYCSRTMSEIEKALAELKALMKYRAQQLGYTEDFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + EN + + ++PPGV+TL D+
Sbjct: 120 VKREKSGTIVDARCRSMTAGFVKEKKERGEDVELCIYHENLDLLEPSNLVPPGVFTLDDM 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF R M+ F NV++YSY YLLDPK+A +S+E+ K+S+VVFDEAHNID
Sbjct: 180 LKYGEQHKQCPYFSVRRMMPFCNVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A+R + + + I+ K+ DA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKASRGANNLERRIDEMKSLDAEKLQNEYQKLVEGLREADEARQ 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+ ++NPALP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P SF+A
Sbjct: 300 EEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFLAH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATL TY +GF +I+EP
Sbjct: 360 LKDLTFIERKPLRFCAERLTSLVRTLELMNLEDYQPLQQVAAFATLAATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++L F V+ S
Sbjct: 420 FESDTATVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFTTVLQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG LL+E I PDGIV FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ VA
Sbjct: 540 SYLYMESIISMWQGMGILDSIWNYKLILVETPDSQESSLALETYRTACCNGRGAILLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR VI GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRTVICIGVPFQYTESR 630
>gi|115492105|ref|XP_001210680.1| DNA repair helicase RAD3 [Aspergillus terreus NIH2624]
gi|114197540|gb|EAU39240.1| DNA repair helicase RAD3 [Aspergillus terreus NIH2624]
Length = 790
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/631 (50%), Positives = 440/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L PE+ KLIYC+RT+ E+EK LAELK L ++ + LG A+GL+SRKNLC++
Sbjct: 61 LHYPEHR-KLIYCSRTMSEIEKALAELKALMKFRAKELGYTEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + EN + ++PPGV+TL L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCTYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+ F NV++YSY YLLDPK+A +S+E K+ +VVFDEAHNID
Sbjct: 180 IKYGEQHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSREFSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L ATR + + ++I K++DA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDITEDSLRKATRGANNLERKITEMKSSDAEKLQNEYTKLVEGLREAEQARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P SF+
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFLTH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 VKDLTYIERKPLRFCAERLTSLVRTLELINIEDYQPLQEVATFATLVATYDKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++L F V+ S
Sbjct: 420 FESEAATVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFTTVMQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG +++E I PDG+V FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNIVLEFSRITPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ F VA
Sbjct: 540 SYLYMESIISMWQGMGILDSIWNYKLILVETPDAQESSLALETYRTACCNGRGAILFCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRAVLCIGVPFQYTESR 630
>gi|325090321|gb|EGC43631.1| DNA repair helicase RAD3 [Ajellomyces capsulatus H88]
Length = 797
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/631 (50%), Positives = 442/631 (70%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+PE KLIYC+RT+ E+EK LAELK L Y+ + LG A +GL+SRKNLC++
Sbjct: 61 QHQPEQR-KLIYCSRTMSEIEKALAELKALMKYRAQQLGFAEDFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ + ++E C + EN + + ++PPGV+TL D+
Sbjct: 120 VKREKSGAVVDARCRSLTAGFVKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDDI 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF R M+ F V++YSY YLLDPK+A +S+E+ K+S+VVFDEAHNID
Sbjct: 180 TKYGEQHKQCPYFSVRRMMPFCKVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A+R + + ++IE K +DA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKASRGANNLERKIEEMKRSDAEKLQNEYQKLVEGLREADEARQ 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+ ++NPALP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P+SF+A
Sbjct: 300 EEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKITHTISETPLSFLAH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATL TY +GF +I+EP
Sbjct: 360 LKDLTFIERKPLRFCAERLTSLVRTLELVNLEDYQPLQQVAAFATLAATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L +C DA++A+KPVFDRF SV++TSGTLSP+++YP++L F V+ S
Sbjct: 420 FESETATVPNPILHFTCLDAAIAIKPVFDRFSSVIVTSGTLSPLEMYPKMLKFTTVLQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PMV+TRGSDQ +S+ F +R+DPGV RNYG LL+E I PDG+V FF
Sbjct: 480 YTMTLARRSFLPMVVTRGSDQAQISSSFQIRNDPGVVRNYGNLLLEFSRITPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL + +KL+ +ET D E++LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMESIISMWQGMGILDLVWNYKLILVETPDSQESSLALETYRTACCNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR VI GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRAVICIGVPFQYTESR 630
>gi|392575737|gb|EIW68869.1| hypothetical protein TREMEDRAFT_30972 [Tremella mesenterica DSM
1558]
Length = 796
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/632 (50%), Positives = 451/632 (71%), Gaps = 2/632 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPYD IYPEQYSYM +LK+ LDA GHC+LEMP+GTGKT++LLSLI SY+
Sbjct: 1 MKFMIDDLPVLFPYDRIYPEQYSYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVSYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
P KLIYC+RTV E+EK LAELK L Y+ +GL+SR+NLC++
Sbjct: 61 QFYPVKR-KLIYCSRTVPEIEKALAELKRLMEYRVEMGAKDEDFRGLGLTSRRNLCLHPE 119
Query: 121 VLAAENRDSVDAACRKRTASWV-RALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
V + VD+ CR T+++ AE ++ C + E + ++PPGVYTL D
Sbjct: 120 VSKEKKGKIVDSRCRDLTSAFACEKGRAEPGSVPLCSYHEELNNYETGNLIPPGVYTLDD 179
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
++ +G+++G CPYF R M+ F ++++YS+ YLLDPKVA +S EM KES+VVFDEAHNI
Sbjct: 180 VKKWGQEKGTCPYFTIRRMMPFVDIIIYSFHYLLDPKVAENVSAEMSKESIVVFDEAHNI 239
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCIE+LS+ + R L+ A R++++I+ +IE K TDA +L+ EY +LV GL
Sbjct: 240 DNVCIESLSIDLTRPMLDSAARSVNKISDKIEEMKRTDATKLQDEYEKLVAGLQEANERR 299
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
+ L++P L +D+L+EA+PGNIR+AEHF+ L+R ++Y++ R+ +V E P SF+A
Sbjct: 300 EDEDMLASPVLSTDLLEEAMPGNIRKAEHFIAFLKRFIEYMKTRMRVLHVVAETPQSFLA 359
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
+ I+++ L+F ERL +L+ TLE+T+ DE +Q + F TLV TY +GF +I+E
Sbjct: 360 HLKEITFIERRPLKFAAERLTNLVRTLELTNIDEHYALQKVAGFGTLVATYEKGFLLILE 419
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
P++ +P+P+ ++C D SLA+ PVF+RF SVVITSGT+SP+D+YP++L F P + +
Sbjct: 420 PYETEHATVPNPIFHMTCLDPSLAIAPVFERFSSVVITSGTISPLDMYPKILQFQPTLIQ 479
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
S+ M+LTR+ PMV+TRGSDQ+P+S++F++R+DP V RN+G +L++M VPDGIV FF
Sbjct: 480 SYPMTLTRNAFFPMVITRGSDQVPISSRFEVRNDPAVVRNFGSILIDMSKTVPDGIVAFF 539
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
SY YM+ I++ W D GIL E+ +HKL+F+ET D +ET++AL NYR+AC+ GRGAV SV
Sbjct: 540 PSYLYMESIVSAWYDMGILSEVWKHKLLFVETPDAMETSVALKNYREACNNGRGAVMLSV 599
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ARGKV+EGIDFD +YGR VIMFG+P+QYT S+
Sbjct: 600 ARGKVSEGIDFDHNYGRAVIMFGIPYQYTESR 631
>gi|169763188|ref|XP_001727494.1| DNA repair helicase rad15 [Aspergillus oryzae RIB40]
gi|83770522|dbj|BAE60655.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 794
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/631 (50%), Positives = 441/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ KLIYC+RT+ E+EK LAELK L ++T+ LG A+GL+SRKNLC++
Sbjct: 61 MHYPEHR-KLIYCSRTMSEIEKALAELKALMKFRTQQLGYTEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + EN + ++PPGV+TL L
Sbjct: 120 VKREKSGTIVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+ CPYF AR M+ F NV++YSY YLLDPK+A +S+E K+ +VVFDEAHNID
Sbjct: 180 LKYGEDHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSREFSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L ATR + + ++I K++DA +L++EY++LVEGL
Sbjct: 240 NVCIESLSIDITENSLRKATRGANNLERKINEMKSSDAEKLQSEYSKLVEGLREAEQARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P SF+
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFISFLKRFIEYLKTRMKVTHTISETPPSFLTH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 VKDLTYIERKPLRFCAERLTSLVRTLELINIEDYQPLQEVATFATLVSTYDKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL +C DA++A+KPVF+RF SV+ITSGTLSP+++YP++L F V+ S
Sbjct: 420 FESEAATVPNPVLHFTCLDAAIAIKPVFERFSSVIITSGTLSPLEMYPKMLGFTTVMQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PMV+TRGSDQ +S+ F +R+DPGV RNYG +++E I PDGIV FF
Sbjct: 480 YSMTLARRSFLPMVVTRGSDQAQISSSFQIRNDPGVVRNYGNIVLEFSRITPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ VA
Sbjct: 540 SYLYMESIISMWQGMGILDSIWNYKLILVETPDAQESSLALETYRTACCNGRGAILMCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR VI GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRAVICIGVPFQYTESR 630
>gi|225560307|gb|EEH08589.1| DNA repair helicase RAD3 [Ajellomyces capsulatus G186AR]
Length = 797
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/631 (50%), Positives = 441/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+PE KLIYC+RT+ E+EK LAELK L Y+ + LG +GL+SRKNLC++
Sbjct: 61 QHQPEQR-KLIYCSRTMSEIEKALAELKALMKYRAQQLGFVEDFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ + ++E C + EN + + ++PPGV+TL D+
Sbjct: 120 VKREKSGAVVDARCRSLTAGFVKEKKEKGGDVELCIYHENLDLLEPSNLVPPGVFTLDDI 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF R M+ F V++YSY YLLDPK+A +S+E+ K+S+VVFDEAHNID
Sbjct: 180 TKYGEQHKQCPYFSVRRMMPFCKVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A+R + + ++IE K +DA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKASRGANNLERKIEEMKRSDAEKLQNEYQKLVEGLREADEARQ 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+ ++NPALP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P+SF+A
Sbjct: 300 EEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKITHTISETPLSFLAH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATL TY +GF +I+EP
Sbjct: 360 LKDLTSIERKPLRFCAERLTSLVRTLELMNLEDYQPLQQVAAFATLAATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L +C DA++A+KPVFDRF SV++TSGTLSP+++YP++L F V+ S
Sbjct: 420 FESETATVPNPILHFTCLDAAIAIKPVFDRFSSVIVTSGTLSPLEMYPKMLKFTTVLQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PMV+TRGSDQ +S+ F +R+DPGV RNYG LL+E I PDG+V FF
Sbjct: 480 YTMTLARRSFLPMVVTRGSDQAQISSSFQIRNDPGVVRNYGNLLLEFSRITPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL + +KL+ +ET D E++LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMESIISMWQGMGILDLVWNYKLILVETPDSQESSLALETYRTACCNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR VI GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRAVICIGVPFQYTESR 630
>gi|238489069|ref|XP_002375772.1| TFIIH complex helicase Rad3, putative [Aspergillus flavus NRRL3357]
gi|220698160|gb|EED54500.1| TFIIH complex helicase Rad3, putative [Aspergillus flavus NRRL3357]
gi|391869618|gb|EIT78813.1| RNA polymerase II transcription initiation [Aspergillus oryzae
3.042]
Length = 794
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/631 (50%), Positives = 441/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ KLIYC+RT+ E+EK LAELK L ++T+ LG A+GL+SRKNLC++
Sbjct: 61 MHYPEHR-KLIYCSRTMSEIEKALAELKALMKFRTQQLGYTEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + EN + ++PPGV+TL L
Sbjct: 120 VKREKSGTIVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+ CPYF AR M+ F NV++YSY YLLDPK+A +S+E K+ +VVFDEAHNID
Sbjct: 180 LKYGEDHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSREFSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L ATR + + ++I K++DA +L++EY++LVEGL
Sbjct: 240 NVCIESLSIDITEDSLRKATRGANNLERKINEMKSSDAEKLQSEYSKLVEGLREAEQARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P SF+
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFISFLKRFIEYLKTRMKVTHTISETPPSFLTH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 VKDLTYIERKPLRFCAERLTSLVRTLELINIEDYQPLQEVATFATLVSTYDKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL +C DA++A+KPVF+RF SV+ITSGTLSP+++YP++L F V+ S
Sbjct: 420 FESEAATVPNPVLHFTCLDAAIAIKPVFERFSSVIITSGTLSPLEMYPKMLGFTTVMQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PMV+TRGSDQ +S+ F +R+DPGV RNYG +++E I PDGIV FF
Sbjct: 480 YSMTLARRSFLPMVVTRGSDQAQISSSFQIRNDPGVVRNYGNIVLEFSRITPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ VA
Sbjct: 540 SYLYMESIISMWQGMGILDSIWNYKLILVETPDAQESSLALETYRTACCNGRGAILMCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR VI GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRAVICIGVPFQYTESR 630
>gi|444730736|gb|ELW71110.1| TFIIH basal transcription factor complex helicase XPD subunit
[Tupaia chinensis]
Length = 732
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/631 (51%), Positives = 434/631 (68%), Gaps = 28/631 (4%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQDGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VR ++ ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRVQYQQDSSLPHCRFYEEFDAHGRQVPLPMGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP + RL ++V +E P +F++S
Sbjct: 301 TDAHLANPVLPDE----------------------------WRLRVQHVVQESPPAFLSS 332
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 333 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 392
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 393 FDDRTPTIANPILHFSCMDASLAIKPVFSRFQSVIITSGTLSPLDIYPKILDFHPVTMAT 452
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 453 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 512
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 513 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 572
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 573 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 603
>gi|297705154|ref|XP_002829448.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit-like [Pongo abelii]
Length = 724
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/593 (53%), Positives = 430/593 (72%)
Query: 39 LLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHL 98
+LEMP+GTGKT++LL+LI +Y + P KLIYC+RTV E+EK + EL+ L N+ +
Sbjct: 3 VLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQE 62
Query: 99 GPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFF 158
G + L + LSSRKNLC++ V VD C TAS+VRA + ++ C F+
Sbjct: 63 GEKLQFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFY 122
Query: 159 ENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVA 218
E ++ L G+Y L DL+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A
Sbjct: 123 EEFDAHGREVPLSAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIA 182
Query: 219 GIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDA 278
++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+ NL + + + R K TD
Sbjct: 183 DLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDE 242
Query: 279 GRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQ 338
RLR EY RLVEGL DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++
Sbjct: 243 QRLRDEYRRLVEGLREASVARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLE 302
Query: 339 YLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQ 398
Y++ RL ++V +E P +F++ + I +K LRFC ERL SL+ TLEITD +F +
Sbjct: 303 YVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLYTLEITDLADFSPLT 362
Query: 399 TICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITS 458
+ +FATLV TY +GF+IIIEPFD+R P I +P+L SC DASLA+KPVF+RFQSV+ITS
Sbjct: 363 LLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITS 422
Query: 459 GTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVAR 518
GTLSP+D+YP++L+FHPV +F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V R
Sbjct: 423 GTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIR 482
Query: 519 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETT 578
NYG LL+EM ++VPDGIV FF SY YM+ +A+W + GIL+ I ++KL+FIETQD ET+
Sbjct: 483 NYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETS 542
Query: 579 LALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+AL+ Y++AC+ GRGA+ SVARGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 543 VALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 595
>gi|297277341|ref|XP_002808245.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase subunit-like [Macaca mulatta]
Length = 739
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/610 (53%), Positives = 435/610 (71%), Gaps = 3/610 (0%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y + P KLIYC+RTV E+EK +
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
EL+ L N+ + G L + LSSRKNLC++ V VD C TAS+VRA
Sbjct: 61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+ ++ C F+E ++ LP G+Y L DL+A G++QGWCPYFLAR+ + ANV
Sbjct: 121 QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV 180
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+ NL
Sbjct: 181 VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 240
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + + R K TD RLR EY RLVEGL DA L+NP LP ++L+EAVPG+IR
Sbjct: 241 TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR 300
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
AEHFL LRRL++Y++ RL ++V +E P +F++ + I +K LRFC ERL SL+
Sbjct: 301 TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH 360
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLEITD +F + + +FATLV TY +GF+IIIEPFD+R P I +P+L SC DASLA+
Sbjct: 361 TLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAI 420
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+L R C+CPM++ RG+DQ+ +
Sbjct: 421 KPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQVAI 480
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY YM+ +A+W + GIL+ I ++
Sbjct: 481 SSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRN 540
Query: 565 KLVFIETQDVVETTLALDNYRKA---CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
KL+FIETQD ET++AL+ Y++ C GRGAV S AR K ++GI F HYGR VIMF
Sbjct: 541 KLLFIETQDGAETSVALEKYQEVGVPCXNGRGAVRLSWARVKPSDGIHFMHHYGRAVIMF 600
Query: 622 GVPFQYTLSK 631
GVP+ YT S+
Sbjct: 601 GVPYVYTQSR 610
>gi|425770095|gb|EKV08569.1| TFIIH complex helicase Rad3, putative [Penicillium digitatum Pd1]
gi|425771642|gb|EKV10079.1| TFIIH complex helicase Rad3, putative [Penicillium digitatum PHI26]
Length = 794
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/631 (50%), Positives = 441/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L ++ + LG + A+GL+SRKNLC++
Sbjct: 61 QHYPEH-RKLIYCSRTMSEIEKALAELKALMEHRAKELGHEEEFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + EN + ++PPGV+TL L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF AR M+ + N+++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 ARYGEEHKQCPYFSARRMMPWCNIIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L ATR + + + IE K+TD +L+ EY++LVEGL
Sbjct: 240 NVCIESLSIDLSEDSLRKATRGANNLERRIEEMKSTDEEKLKNEYSKLVEGLQEAEKARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P SF+
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVTHTISETPPSFLTH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 LKDLTYIERKPLRFCAERLTSLVRTLELVNIEDYQPLQEVATFATLVATYDKGFVLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++L F V+ S
Sbjct: 420 FESEAATVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFTAVLQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ VS+ F +R+DPGV RNYG L+ E I PDG+V FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQAQVSSSFGIRNDPGVVRNYGSLVTEFARITPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL +I +KL+ +ET D E++LAL+ YR AC GRGA+ F VA
Sbjct: 540 SYLYMESIISMWQGMGILDQIWNYKLILVETPDAQESSLALETYRTACCNGRGAILFCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRAVLCIGVPFQYTESR 630
>gi|119495148|ref|XP_001264365.1| TFIIH complex helicase Rad3, putative [Neosartorya fischeri NRRL
181]
gi|119412527|gb|EAW22468.1| TFIIH complex helicase Rad3, putative [Neosartorya fischeri NRRL
181]
Length = 794
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/631 (50%), Positives = 442/631 (70%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFMIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L ++T+ LG A+GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALAELKELMKFRTQQLGYTEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + EN + ++PPGV+TL L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF AR M+ + NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 LKYGEEHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALS+ + +L ATR + + ++I K++DA +L+ EY++LVEGL
Sbjct: 240 NVCIEALSIDITEDSLRKATRGANNLERKISEMKSSDAEKLQNEYSKLVEGLREAEQARD 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +++NP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P SF+
Sbjct: 300 EDQFIANPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFLTH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 VKDLTFIERKPLRFCAERLTSLVRTLELVNIEDYQPLQEVATFATLVSTYDKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++L F V+ S
Sbjct: 420 FESETATVPNPVLHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFPTVLQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG +++E I PDGIV FF
Sbjct: 480 YTMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNIVLEFSRITPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ F VA
Sbjct: 540 SYLYMESIISMWQGMGILDSIWNYKLILVETPDSQESSLALETYRTACCNGRGAILFCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRAVLCIGVPFQYTESR 630
>gi|339236173|ref|XP_003379641.1| TFIIH basal transcription factor complex helicase subunit
[Trichinella spiralis]
gi|316977682|gb|EFV60753.1| TFIIH basal transcription factor complex helicase subunit
[Trichinella spiralis]
Length = 777
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/631 (49%), Positives = 440/631 (69%), Gaps = 13/631 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ ++V FPY+ IYPEQY YML+LKR LDA+GHCLLEMP+GTGKT +LLSL+ +YV
Sbjct: 16 MRIDVDGLSVIFPYEFIYPEQYYYMLQLKRTLDARGHCLLEMPSGTGKTASLLSLVIAYV 75
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RT+ E+ K + EL+ L + + G + I+ + +S+RKN+C++
Sbjct: 76 KAYPSQLEKLIYCSRTIPEISKVVEELRHLCDSYEKETGESLNIVGLAMSARKNMCIHPE 135
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C T+S+VRA ++P+I C +FE + + + LP GVY L DL
Sbjct: 136 VSKLRLGKIVDGHCLSLTSSFVRARRLDDPSIPCCNYFEEFMEEGVESALPRGVYNLDDL 195
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A+G++ GWCPYF+ARH + A+V+VYSY YLLDPK+A +ISK++ + SVVVFDEAHNID
Sbjct: 196 KAYGRRMGWCPYFVARHALLRADVIVYSYHYLLDPKIAELISKDLSRRSVVVFDEAHNID 255
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LSV+++++T+E NL + + ++ K D L EY RLVEGL +L
Sbjct: 256 NVCIESLSVTLKKRTIERCQENLESLQKFVKETKERDVAHLDREYKRLVEGLREAKHLRD 315
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP DIL+EAVPG+IR AEHF+ LRR + Y++ R+ + +V E P F++
Sbjct: 316 TDKILANPVLPDDILEEAVPGSIRNAEHFIAFLRRFLNYVKHRMSSNSVMIENPAVFLSD 375
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE++DT F + + +FATLV TY +GF ++ EP
Sbjct: 376 VQIRTAIERKPLRFCSERLASLLRTLELSDTSNFAPLILLANFATLVSTYAKGFCLLFEP 435
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FDE++P +P+PV+ SC DAS+A++P TLSP+D+YP++LNF P V S
Sbjct: 436 FDEKLPTVPNPVMTFSCMDASIAIRP-------------TLSPLDMYPKILNFDPAVMAS 482
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R CI P+++ +G+DQ+ +++KF+ R D V RNYG LL+E+ IVPDGIVCFF
Sbjct: 483 FSMTLARPCILPLIVAKGNDQITMTSKFEARDDTSVIRNYGTLLLELSRIVPDGIVCFFT 542
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A W GI+ IM++KL+FIETQD++ET+LAL NY KAC+ GRGA+ SVA
Sbjct: 543 SYMYMENTVAFWYKQGIIDRIMKNKLLFIETQDIIETSLALQNYIKACENGRGAILLSVA 602
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DF H GR V+M GVP+ YT S+
Sbjct: 603 RGKVSEGVDFSDHLGRAVVMLGVPYVYTESR 633
>gi|336468265|gb|EGO56428.1| hypothetical protein NEUTE1DRAFT_130389 [Neurospora tetrasperma
FGSC 2508]
gi|350289484|gb|EGZ70709.1| putative excision repair protein rhp3 [Neurospora tetrasperma FGSC
2509]
Length = 806
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/631 (50%), Positives = 440/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM++LK+ LDA G+C+LEMP+GTGKT+ LLSLI +Y
Sbjct: 1 MEFNIDDLPVLFPYPRIYPEQYAYMVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK L EL+ L ++ LG + +GL+SRKNLC++
Sbjct: 61 QYYPEHR-KLIYCSRTMSEIEKALVELRALMKFRAERLGHEEEFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ + N+ETC + +N + ++P G++TL L
Sbjct: 120 VKREKSGAIVDARCRSLTAGFVKEKREKGENVETCVYHDNLDLLEPHNLIPNGIWTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+++ CPYF AR M+Q+ NV++YSY YLLDPK+A +SK++ K+ +VVFDEAHNID
Sbjct: 180 MRYGEEKKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS + + +L ATR + +I K +D +L++EY +LVEGL
Sbjct: 240 NVCIESLSTDITQDSLMRATRGAQNLEAKISEMKDSDQEKLQSEYEKLVEGLKGLDEGRQ 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA+++NP LP D+LKEAVPGNIRRAEHF+ LRR ++YL+ R++ V E P SF+A
Sbjct: 300 EDAFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLAH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 LKEYTFIEKKPLRFCAERLTSLVRTLELTNIEDYRPLQEVATFATLVATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ P+PVL +C DA++A+KPVFDRF SV+ITSGT+SP+++YP++LNF VV S
Sbjct: 420 YESDTAKTPNPVLHFTCLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFETVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +ST F +R++P V RNYG LL E I PDG+V FF
Sbjct: 480 YAMTLARRSFLPMIVTRGSDQASISTSFQVRNEPSVVRNYGNLLTEFARITPDGMVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL E+ +HKL+ +ET D ET+LAL+ YR AC GRGA+ VA
Sbjct: 540 SYLYMESIISMWQGMGILDEVWKHKLILVETPDAQETSLALETYRTACCNGRGAILLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHQYGRTVLCIGVPFQYTESR 630
>gi|407928326|gb|EKG21185.1| Xeroderma pigmentosum group D protein [Macrophomina phaseolina MS6]
Length = 788
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/631 (50%), Positives = 437/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ V FPY IYPEQY YM +LKR LDA G+C+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFNIDELPVLFPYPRIYPEQYKYMCDLKRTLDAGGNCILEMPSGTGKTVSLLSLIIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+PE KLIYC+RT+ E+EK L ELK L Y+T LG +GL+SRKNLC++
Sbjct: 61 QHQPEKR-KLIYCSRTMSEIEKALHELKALMKYRTEQLGYEEDFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +N VDA CR TA +V+ +++ C + +N + ++PPGV+T D+
Sbjct: 120 VKREKNGAVVDARCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVFTFDDI 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+ CPYF AR M+ F NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNID
Sbjct: 180 LRYGEDHKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L ATR + ++I KATDA +L EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKATRGAHNLERKITEMKATDAEKLSNEYKKLVEGLREADQARD 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA++SNPALP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ +V E P SF+
Sbjct: 300 EDAFMSNPALPDDLLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVLHVVAETPPSFLNH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY GF +I+EP
Sbjct: 360 LKELTFIERKPLRFCAERLTSLVRTLELTNIEDYQPLQEVATFATLVATYETGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ +P+P+ +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YP++LNF VV S
Sbjct: 420 YEAEGATVPNPIFHFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPKMLNFSTVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DP V +NYG LL E + PDGIV FF
Sbjct: 480 YTMTLARKSFLPMIVTRGSDQAAISSSFGVRNDPNVVKNYGVLLREFCKLTPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +I+ W GIL ++ ++KL+ +ET D ET+LAL+ YR AC+ GRGAV VA
Sbjct: 540 SYLYMESVISQWQGMGILDDVWRYKLILVETPDAQETSLALETYRTACNNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRTVLCIGVPFQYTESR 630
>gi|380094849|emb|CCC07351.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 806
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/631 (50%), Positives = 440/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM++LK+ LDA G+C+LEMP+GTGKT+ LLSLI +Y
Sbjct: 1 MEFNIDDLPVLFPYPRIYPEQYAYMVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK L EL+ L ++ LG + +GL+SRKNLC++
Sbjct: 61 QYYPEHR-KLIYCSRTMSEIEKALVELRALMKFRAERLGREEEFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ + N+ETC + +N + ++P G++TL L
Sbjct: 120 VKREKSGTIVDARCRSLTAGFVKEKREKGENVETCIYHDNLDLLEQGNLIPNGIWTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+++ CPYF AR M+Q+ NV++YSY YLLDPK+A +SK++ K+ +VVFDEAHNID
Sbjct: 180 LRYGEEKKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS + + +L ATR + +I K +D +L++EY +LVEGL
Sbjct: 240 NVCIESLSTDITQDSLMRATRGAQNLEAKIAEMKDSDQEKLQSEYEKLVEGLKGLDEGRQ 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA+++NP LP D+LKEAVPGNIRRAEHF+ LRR ++YL+ R++ V E P SF+A
Sbjct: 300 EDAFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLAH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 LKEYTFIEKKPLRFCAERLTSLVRTLELTNIEDYRPLQEVATFATLVATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ P+PVL +C DA++A+KPVFDRF SV+ITSGT+SP+++YP++LNF VV S
Sbjct: 420 YESDTAKTPNPVLHFTCLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFETVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +ST F +R++P V RNYG LL E + PDG+V FF
Sbjct: 480 YAMTLARRSFLPMIVTRGSDQASISTSFQVRNEPSVVRNYGNLLTEFARMTPDGMVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL E+ +HKL+ +ET D ET+LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMESIISMWQGMGILDEVWKHKLILVETPDAQETSLALETYRTACCNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHQYGRTVLCIGVPFQYTESR 630
>gi|408395822|gb|EKJ74995.1| hypothetical protein FPSE_04815 [Fusarium pseudograminearum CS3096]
Length = 789
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/631 (50%), Positives = 437/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFNIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE KLIYC+RT+ E+EK L ELK L Y+ LG + +GL+SRKNLC++
Sbjct: 61 QYMPEKR-KLIYCSRTMSEIEKALVELKSLMKYRAEELGYEEEFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ N++ C + +N + ++P GV++ D+
Sbjct: 120 VKREKSGAIVDARCRSLTAGFVKEKKERGENVDVCVYHDNLDLLEPHNLIPNGVWSFDDI 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++Q CPYF AR M+Q+ NVV++SY YLLDPK+A +SK+ K+ +VVFDEAHNID
Sbjct: 180 IRYGEEQKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS + +L ATR + +I + + TD +L+ EY +LV+GL
Sbjct: 240 NVCIESLSTDITEDSLRKATRGAQNLENKISQMRDTDQEQLQNEYQKLVQGLRDADEARQ 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA+++NPALP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ V E P SF++
Sbjct: 300 EDAFMANPALPEDLLKEAVPGNIRRAEHFIAFLKRFIEYLKTRMKVRQVISETPPSFLSH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ H I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 LREHTFIEKKPLRFCAERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL +C DA++A+KPVFDRF SV+ITSGT+SP+++YP++L+F V+ S
Sbjct: 420 FESDTAEVPNPVLHFTCLDAAIAIKPVFDRFYSVIITSGTISPLEIYPKMLDFQTVIQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ VST F +R++P V RNYG LL E I PDG+V FF
Sbjct: 480 YAMTLARRSFMPMIVTRGSDQASVSTSFQVRNEPSVVRNYGNLLTEFAKITPDGMVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W G+L E+ ++KL+ +ET D ET+LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMESIISMWQGMGVLDEVWKYKLILVETPDAQETSLALETYRTACCNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHQYGRTVLCIGVPFQYTESR 630
>gi|255941534|ref|XP_002561536.1| Pc16g12370 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586159|emb|CAP93907.1| Pc16g12370 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 795
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/631 (50%), Positives = 440/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LD GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDVGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L ++ + LG + A+GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALAELKALMEHRAKELGHEEEFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + EN + ++PPGV+TL L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF AR M+ + N+++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 SRYGEEHKQCPYFSARRMMPWCNIIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L ATR + + + IE K+TD +L+ EY++LVEGL
Sbjct: 240 NVCIESLSIDLSEDSLRKATRGANNLERRIEDMKSTDEEKLKNEYSKLVEGLQEAEKARD 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P SF+
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFISFLKRFIEYLKTRMKVTHTISETPPSFLTH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 LKDLTYIERKPLRFCAERLTSLVRTLELVNIEDYQPLQEVATFATLVATYDKGFVLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++L F V+ S
Sbjct: 420 FESEAATVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFTAVLQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ VS+ F +R+DPGV RNYG L+ E I PDG+V FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQAQVSSSFGIRNDPGVVRNYGSLVTEFARITPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL +I +KL+ +ET D E++LAL+ YR AC GRGA+ F VA
Sbjct: 540 SYLYMESIISMWQGMGILDQIWNYKLILVETPDAQESSLALETYRTACCNGRGAILFCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRAVLCIGVPFQYTESR 630
>gi|196006780|ref|XP_002113256.1| hypothetical protein TRIADDRAFT_50379 [Trichoplax adhaerens]
gi|190583660|gb|EDV23730.1| hypothetical protein TRIADDRAFT_50379 [Trichoplax adhaerens]
Length = 720
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/631 (53%), Positives = 438/631 (69%), Gaps = 41/631 (6%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQYSYM ELKRALDAKGHC LEMP+GTGKTI+LLSLI +Y
Sbjct: 1 MKLNIDGLLVYFPYDYIYPEQYSYMCELKRALDAKGHCALEMPSGTGKTISLLSLIIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
P + KLIYC+RTV E+EK L E+K+L Y + G K L +GLS+RKNLC++
Sbjct: 61 KVYPLHITKLIYCSRTVPEIEKALEEMKILLEYYEKQTGEKQKFLGLGLSARKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
+ + VD C TAS+VR ++ ++E C FFE ++ +VLPPGVY L DL
Sbjct: 121 ISKERDGKVVDGRCLGLTASYVRRNHQQDRSVEVCSFFEKFDTFGRDSVLPPGVYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ FG +QGWCPYFLARH + ANVVVYSY YLLDPK+A ++SKEM K+SVVVFDEAHNID
Sbjct: 181 KDFGAKQGWCPYFLARHSILHANVVVYSYYYLLDPKIADLVSKEMSKQSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+++V + R+T++ L +++++++ K TD +L+ EY RLVEG+ L + I
Sbjct: 241 NVCIESMTVKISRKTIDRCQTALDVMDKKVKKIKETDKKKLQEEYRRLVEGIYLIPDKTI 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
A L +++ +VQ E P+SF+
Sbjct: 301 A----------------------------LLIVQHVVQ-------------ETPMSFLHH 319
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I ID+K LRFC ERL SLM TLEI + EF + FATLV TY++GF++IIEP
Sbjct: 320 IKETVCIDRKPLRFCSERLQSLMHTLEIINNSEFAALAAAASFATLVSTYSKGFTLIIEP 379
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P IPDPVL SC DAS+A+KPVFDRFQSVVITSGTLSP+D+YP++LNF PV S
Sbjct: 380 FDDRAPTIPDPVLHFSCMDASIAIKPVFDRFQSVVITSGTLSPLDMYPKILNFRPVSMSS 439
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R +CP+++TRG+DQ+ +S+KF+ R D V RNYG LL E+ + VPDG+VCFF
Sbjct: 440 YTMTLARPSLCPLIVTRGNDQVTISSKFESREDIAVMRNYGNLLAELTASVPDGVVCFFP 499
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY+YM+ +++ W D GI+ I+++KL+FIETQD+ ET LAL+NY KAC+ GRGAV SVA
Sbjct: 500 SYTYMESVVSFWCDQGIMNNIIRNKLLFIETQDLAETVLALENYYKACENGRGAVLLSVA 559
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+MFG+P+ YT S+
Sbjct: 560 RGKVSEGIDFDHHYGRAVLMFGIPYVYTQSR 590
>gi|16416010|emb|CAB91361.2| probable excision repair protein rhp3 [Neurospora crassa]
Length = 806
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/631 (50%), Positives = 439/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM++LK+ LDA G+C+LEMP+GTGKT+ LLSLI +Y
Sbjct: 1 MEFNIDDLPVLFPYPRIYPEQYAYMVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK L EL+ L ++ LG + +GL+SRKNLC++
Sbjct: 61 QYYPEHR-KLIYCSRTMSEIEKALVELRALMKFRAERLGHEEEFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ + N+ETC + +N + ++P G++TL L
Sbjct: 120 VKREKSGAIVDARCRSLTAGFVKEKREKGENVETCVYHDNLDLLEPHNLIPNGIWTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+++ CPYF AR M+Q NV++YSY YLLDPK+A +SK++ K+ +VVFDEAHNID
Sbjct: 180 MRYGEEKKQCPYFTARRMMQHCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS + + +L ATR + +I K +D +L++EY +LVEGL
Sbjct: 240 NVCIESLSTDITQDSLMRATRGAQNLEAKISEMKDSDQEKLQSEYEKLVEGLKGLDEGRQ 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA+++NP LP D+LKEAVPGNIRRAEHF+ LRR ++YL+ R++ V E P SF+A
Sbjct: 300 EDAFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLAH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 LKEYTFIEKKPLRFCAERLTSLVRTLELTNIEDYRPLQEVATFATLVATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ P+PVL +C DA++A+KPVFDRF SV+ITSGT+SP+++YP++LNF VV S
Sbjct: 420 YESDTAKTPNPVLHFTCLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFETVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +ST F +R++P V RNYG LL E I PDG+V FF
Sbjct: 480 YAMTLARRSFLPMIVTRGSDQASISTSFQVRNEPSVVRNYGNLLTEFARITPDGMVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL E+ +HKL+ +ET D ET+LAL+ YR AC GRGA+ VA
Sbjct: 540 SYLYMESIISMWQGMGILDEVWKHKLILVETPDAQETSLALETYRTACCNGRGAILLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHQYGRTVLCIGVPFQYTESR 630
>gi|259488995|tpe|CBF88902.1| TPA: 5' to 3' DNA helicase (Eurofung) [Aspergillus nidulans FGSC
A4]
Length = 791
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/631 (50%), Positives = 440/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT+ LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAEL+ L +++ LG A+GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALAELRELMKFRSEQLGYTEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ + ++E C + EN + ++PPGV+TL L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKEKGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+ + NV++YSY YLLDPK+A +SKE K+ +VVFDEAHNID
Sbjct: 180 LNYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKEFSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L ATR + + ++I+ K++DA +L EY +LVEGL
Sbjct: 240 NVCIESLSIDITEDSLRKATRGANNLERKIQDVKSSDAEKLNNEYMKLVEGLREAEQARD 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P+SF+
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFLNH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 VKELTFIERKPLRFCAERLTSLVRTLELINIEDYQPLQEVATFATLVSTYDKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL +C DA++A+KPVFDRF SVVITSGTLSP+++YP++L F V+ S
Sbjct: 420 FESEAATVPNPVLHFTCLDAAIAIKPVFDRFSSVVITSGTLSPLEMYPKMLGFTTVMQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG +++E I PDG+V FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNIVLEFSRITPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ F VA
Sbjct: 540 SYLYMESIISMWQGMGILDSIWNYKLILVETPDAQESSLALETYRTACCNGRGALLFCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRAVLCIGVPFQYTESR 630
>gi|145240349|ref|XP_001392821.1| DNA repair helicase rad15 [Aspergillus niger CBS 513.88]
gi|134077338|emb|CAK39953.1| unnamed protein product [Aspergillus niger]
Length = 801
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/631 (50%), Positives = 440/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L ++ + LG A+GL+SRKNLC++
Sbjct: 61 QHYPEH-RKLIYCSRTMSEIEKALAELKALMKFRAKELGYTEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + EN + ++PPGV+TL L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF AR M+ F NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 LKYGEEHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L ATR + + ++I K +DA +L+ EY++LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKATRGANNLERKINEMKTSDAEKLQNEYSKLVEGLQAAEQARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P SF+
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVMHTISETPPSFLTH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 VKDLTYIERKPLRFCAERLTSLVRTLELINIEDYQPLQEVATFATLVATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL +C DA++A+KPVF+RF SV+ITSGTLSP+++YP++L F+ V+ S
Sbjct: 420 FESEAATVPNPVLHFTCLDAAIAIKPVFERFSSVIITSGTLSPLEMYPKMLGFNAVMQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG L++E I PDG+V FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNLVLEFSRITPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ VA
Sbjct: 540 SYLYMESIISMWQGMGILDSIWNYKLILVETPDAQESSLALETYRTACCNGRGALLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR VI GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRAVINIGVPFQYTESR 630
>gi|353227556|emb|CCA78059.1| probable RAD3-DNA helicase/ATPase [Piriformospora indica DSM 11827]
Length = 798
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/638 (50%), Positives = 448/638 (70%), Gaps = 10/638 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F+++++ V FPYD IYPEQY YM +LKR LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFEIDNLPVVFPYDKIYPEQYKYMCDLKRTLDASGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK------ILAIGLSSRKN 114
P KLIYC+RTV E+EK L ELK L Y+ + +GL+SR+N
Sbjct: 61 QFFPTK-RKLIYCSRTVPEIEKALTELKRLMKYRIESAETDEQREKERAFTGLGLTSRRN 119
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPG 173
LC++ +V + VDA CR T++ NP ++ C++ E +++PPG
Sbjct: 120 LCLHPQVSTEKKGHVVDAKCRDLTSAAACEKGRANPGSVPLCDWHEGLNDMEPGSLVPPG 179
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
+ TL DL G++ CPYF R M+ F +V++YS+ YLLDPKVA +SK++ K+++VVF
Sbjct: 180 ILTLADLMERGRRTTTCPYFTIRRMMPFVDVIIYSFHYLLDPKVAEQVSKDLSKDAIVVF 239
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHNIDNVCIE+LS+ + R L+ A R+++++ +++E K TDA +L+ EY +LV+GL
Sbjct: 240 DEAHNIDNVCIESLSIDLTRPMLDSAVRSVTKLGEKVEEIKLTDASKLQDEYAKLVQGLQ 299
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
D +SNP LP D+LKEA+PGNIR+AEHF+ L+R V+YL+ R+ +V E
Sbjct: 300 DADADDNEDPIVSNPVLPEDLLKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAET 359
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
P SF+ + I+++ LRFC ERL SL+ TLE+T DE+ +Q + FATLV TY +G
Sbjct: 360 PASFLQHLKDITYIEKRPLRFCAERLQSLIRTLELTGLDEYYSLQKVASFATLVATYEKG 419
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
F +I+EPF+ +P+P+ L C D S A+KP+F+RF SVVITSGT+SP+D+YP++L F
Sbjct: 420 FLLILEPFETDNATVPNPIFHLICLDPSFAIKPIFERFSSVVITSGTISPLDMYPKMLQF 479
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
PVV ++ M+LTR+C P+V+TRGSDQ+ +S++F++R+DP V RN+G +L+E IVPD
Sbjct: 480 TPVVQETYPMTLTRNCFLPLVITRGSDQVAISSQFEVRNDPAVVRNFGSILIEYSKIVPD 539
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
G+V FF SY YM+ I+A WND GIL+++ +HKL+F+ET D ET++AL+NYR+AC+ GRG
Sbjct: 540 GVVAFFPSYLYMESIVAAWNDMGILEDVWKHKLIFVETPDANETSIALENYRRACNNGRG 599
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
AV SVARGKV+EGIDFD +YGR VIM VP+QYT S+
Sbjct: 600 AVLLSVARGKVSEGIDFDHNYGRAVIM--VPYQYTESR 635
>gi|170591680|ref|XP_001900598.1| probable DNA helicase ERCC2/XPD - southern platyfish [Brugia
malayi]
gi|158592210|gb|EDP30812.1| probable DNA helicase ERCC2/XPD - southern platyfish, putative
[Brugia malayi]
Length = 763
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/627 (51%), Positives = 440/627 (70%), Gaps = 8/627 (1%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLI 71
FPYD IYPEQ YM ELK+ LDAKGHCLLEMP+GTGKT++LLSL+ +Y+L P++ KL+
Sbjct: 7 FPYDYIYPEQILYMSELKKTLDAKGHCLLEMPSGTGKTVSLLSLVIAYMLRFPDHLDKLV 66
Query: 72 YCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVD 131
YC+RT+ E+EK + EL+ L Y + G + A+ LS+RKNLC+N V + VD
Sbjct: 67 YCSRTIPEIEKCVEELRNLFKYYEQCDGKPPSLFAVALSARKNLCINESVSSLRQGSLVD 126
Query: 132 AACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCP 191
AC+K TAS+VRA P++ C FFE ++ P GVY LQ+LR G+Q+G CP
Sbjct: 127 GACQKLTASFVRAKRRLRPDLPCCAFFEKLDEQKDFNY-PDGVYNLQNLRKLGQQKGICP 185
Query: 192 YFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSV 251
YFL+R++V A++VVYSY Y+LDPK+A ++SK + S VVFDEAHNIDNVCIE++SVS+
Sbjct: 186 YFLSRNVVDRAHIVVYSYHYILDPKIAELVSKNFSRHSCVVFDEAHNIDNVCIESMSVSL 245
Query: 252 RRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALP 311
+ T+E AT+ L + + ++R + ++ +LR EY+RLVEGL D L+NP LP
Sbjct: 246 TKTTVEKATQKLGILEEHVQRLREENSEQLRVEYDRLVEGLRRIEEERTNDQILANPVLP 305
Query: 312 SDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKT 371
ILKEAVPG IR A HF+ LRR +YL+ R+ T+ V E P +F+ I ID++
Sbjct: 306 DMILKEAVPGTIRNALHFISFLRRFNEYLKHRMRTKTVLIESPAAFLRDINDLMHIDRRP 365
Query: 372 LRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDP 431
LRFC ER SL TLE+ D +F + I +FATLV TY RGF+I+IEP DE+
Sbjct: 366 LRFCAERFASLTRTLELADISDFSSLVLITNFATLVSTYARGFTIVIEPLDEKSGTSHSC 425
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
L LSC DAS+A++P+F R+ +VVITSGTLSP+D+YP++L+F P + S M+L R CI
Sbjct: 426 TLHLSCMDASVAIRPIFQRYHTVVITSGTLSPLDMYPKILDFDPAIMASLSMTLARPCIA 485
Query: 492 PMVLTRGS-------DQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSY 544
P+++++GS DQ+ ++++F+ R D V RNYG L++E+ S+VPDG+V FF SY Y
Sbjct: 486 PLIVSKGSVAYAHSNDQVAMTSRFESREDAAVIRNYGSLVLELASLVPDGVVVFFTSYLY 545
Query: 545 MDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKV 604
M+ +I+TW D GI+ E++++KL+FIET D +ET++AL+ Y +ACDCGRGA+FFSVARGKV
Sbjct: 546 MENVISTWYDQGIIDELLKYKLLFIETTDALETSIALEKYVEACDCGRGAIFFSVARGKV 605
Query: 605 AEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+EGIDF H GR VIM GVP+ YT S+
Sbjct: 606 SEGIDFSHHLGRAVIMLGVPYVYTESR 632
>gi|452840050|gb|EME41988.1| hypothetical protein DOTSEDRAFT_72929 [Dothistroma septosporum
NZE10]
Length = 798
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/631 (50%), Positives = 435/631 (68%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F +ED+ V FPY IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFYIEDLPVLFPYPRIYPEQYAYMCDLKRTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE KLIYC+RT+ E+EK LAELK L Y+ LG +GL+SRKNLC++
Sbjct: 61 QFYPE-ARKLIYCSRTMSEIEKALAELKALMKYRADQLGEVEDFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ +++ C + +N + ++PPGV+TL +
Sbjct: 120 VRREKSGSVVDARCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVWTLDGM 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+ F NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNID
Sbjct: 180 LQYGEQHKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A R S + Q+I K TDA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKAARGASNLEQKITEMKDTDAEKLQNEYAKLVEGLREADQARD 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
A++SNPALP D+LKEAVPGNIRRAEHF L+R ++YL+ R++ +V E P SF+
Sbjct: 300 EGAFMSNPALPDDLLKEAVPGNIRRAEHFTAFLKRFIEYLKTRMKVLHVISETPPSFLQH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY GF +I+EP
Sbjct: 360 LKELTFIEKKPLRFCAERLTSLVRTLELTNIEDYQPLQEVATFATLVATYDTGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ + +P+L +C DA++A+KPVFDRF SV+ITSGT+SP+++YP++L F VV S
Sbjct: 420 YESDSATVANPILHFTCLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLGFEAVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRG+DQ P+S+ F R+DP V +NYG+LL++ + PDGIV FF
Sbjct: 480 YAMTLARRSFLPMIVTRGADQAPISSNFQRRNDPNVVKNYGQLLIKFSKLTPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +I+ W + G L E+ + KL+ +ET D ET+LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMESVISMWQNMGTLDEVWKSKLILVETPDSQETSLALETYRTACSNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ G+P+QYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRTVLCIGIPYQYTESR 630
>gi|449299736|gb|EMC95749.1| hypothetical protein BAUCODRAFT_502978 [Baudoinia compniacensis
UAMH 10762]
Length = 803
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/631 (50%), Positives = 436/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LKR LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MRFMIDDLPVLFPYPRIYPEQYAYMSDLKRTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L Y+ LG +GL+SRKNLC++
Sbjct: 61 QFYPEHR-KLIYCSRTMSEIEKALAELKALMKYRADQLGEVEDFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ +++ C + +N + ++PPGV+TL +
Sbjct: 120 VKREKSGSVVDARCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVWTLDGM 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+ F NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 LRYGEQHKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + ++L A R + +I++ K TDA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEESLRRAGRGAQNLEDKIKQMKETDAEKLQNEYAKLVEGLREADQARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+A++SNPALP D+LKEA+PGNIRRAEHF L+R ++YL+ R++ +V E P SF+A
Sbjct: 300 EEAFMSNPALPDDLLKEAIPGNIRRAEHFTAFLKRFIEYLKTRMKVLHVISETPPSFLAH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY GF +I+EP
Sbjct: 360 LKELTFIEKKPLRFCAERLTSLVRTLELTNIEDYQPLQEVASFATLVATYETGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ +P+P L +C DA++A+KPVFDRF SV+ITSGT+SP+++YP++L F VV S
Sbjct: 420 YESDTATVPNPELHFTCLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLGFSTVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +ST F R DP V RNYG LL+E + PDGIV FF
Sbjct: 480 YAMTLARRSFLPMIVTRGSDQSQMSTGFQTRDDPQVVRNYGNLLIEFSKLTPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +I++W GIL + + KL+ +ET D ET+LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMERVISSWQSMGILDSVWKSKLILVETPDSQETSLALETYRTACSNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRTVLCIGVPFQYTESR 630
>gi|366997945|ref|XP_003683709.1| hypothetical protein TPHA_0A01920 [Tetrapisispora phaffii CBS 4417]
gi|357522004|emb|CCE61275.1| hypothetical protein TPHA_0A01920 [Tetrapisispora phaffii CBS 4417]
Length = 773
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/634 (50%), Positives = 445/634 (70%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM ++KR LDA G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYHYMCDIKRTLDAGGNSILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L +Y+T+ LG + +GLSSRKNLC++
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKALVELENLMDYRTKELGFKEEFRGLGLSSRKNLCLHPV 119
Query: 121 VLAAENRDSVDAACRKRTASWV-RALAAE-NPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
V VD CR+ T RA+ A+ N N E C++ EN K LP GV++ +
Sbjct: 120 VNKERKGTVVDEKCRRMTNGQAKRAIEADPNANAELCDYHENLYKLEVDDYLPNGVFSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + + CPYF+ R M+ N+++YSY YLLDPK+A +S E+ K+S+V+FDEAHN
Sbjct: 180 KLIKYCNDKTLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L+ AT+ + + +IE K D+ +L+ EY++LV+GL L N
Sbjct: 240 IDNVCIESLSLDLTNDILKKATKGANTLANKIEDVKKVDSKKLQDEYDKLVQGLHLSENE 299
Query: 299 PIADA-WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
D ++ NP L DILKEA+PGNIRRAEHF+ L+RL++YL+ R++ +V E P SF
Sbjct: 300 NEDDEPFVENPVLSEDILKEAIPGNIRRAEHFISFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + ID+K LRFC ERL L+ TLE+TD ++F ++ I FATLV TY GF +I
Sbjct: 360 LQHLKQLTFIDKKPLRFCAERLSLLVRTLEVTDVEDFAALKDIATFATLVSTYEDGFLLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEPF+ +P+P+L+ +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YPR+LNF V+
Sbjct: 420 IEPFELENAAVPNPILRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFTTVL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+LT+ PM++T+GSDQ+ +S++F++R+DP + RNYG +L+E I PDG+V
Sbjct: 480 QKSYTMTLTKKTFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLIEFAKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ II+ W GIL E+ +HKL+ +ET D ET+LAL+ YRKAC GRGA+ F
Sbjct: 540 FFPSYLYMESIISMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILF 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 633
>gi|50556538|ref|XP_505677.1| YALI0F20746p [Yarrowia lipolytica]
gi|49651547|emb|CAG78486.1| YALI0F20746p [Yarrowia lipolytica CLIB122]
Length = 785
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/631 (49%), Positives = 440/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V +PY IYPEQY+YM ++K+ LD G+C+LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLWPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ K+IYC+RT+ E+EK LAELK L ++T LG +GL+SRKNLC+N
Sbjct: 61 QHYPEHR-KIIYCSRTMSEIEKALAELKNLMKFRTETLGFEEDFRGLGLTSRKNLCLNPN 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + VD CR T+ + A ++ CE+ EN +PPGV+T +D+
Sbjct: 120 VRYEKKGYIVDEKCRAMTSGIAKQKLAAGEDVTLCEYHENMNDIEPHNYIPPGVFTFEDI 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
A+G++ CPYF R M+ F NV++YSY YLLDPK+A +SKE+ K+ +V+FDEAHNID
Sbjct: 180 LAYGEEHKTCPYFTVRRMMAFCNVIIYSYHYLLDPKIADRVSKELSKDCIVIFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALSV + +L+ ATR + + +++ +++D+ +L+ EYN+LV+GL +
Sbjct: 240 NVCIEALSVDITEDSLKRATRGANHLAKKVSEARSSDSEKLKNEYNKLVDGLRDLESGEQ 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +L+NP LP D++ EAVPGNIR+AEHF+ L+R ++YL+ R++ +V E P SF+
Sbjct: 300 EDTFLANPVLPEDLISEAVPGNIRKAEHFVAFLKRFIEYLKSRMKVLHVISETPASFLKH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL L+ TLE+T D++ ++ I FATLV TY GF +I+EP
Sbjct: 360 LRDLTYIERKPLRFCAERLSYLVRTLELTHVDDYTALKEIAVFATLVSTYDTGFQLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L L+C DAS+A+KPVFDRF S++ITSGT+SP+D+YP++LNF VV S
Sbjct: 420 FETDQATVPNPILHLTCLDASIAIKPVFDRFSSIIITSGTISPLDMYPKMLNFETVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R CP+++T+GSDQ+ +S++F++R+DP V RNYG LL+E I PDG+V FF
Sbjct: 480 YTMTLARRAFCPLIVTKGSDQVAISSRFEIRNDPSVVRNYGNLLIEFSKITPDGLVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL E+ ++KL+ +ET D ET+LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMESIISMWQTMGILDEVWKYKLILVETPDAQETSLALETYRTACSNGRGAVMLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD +GR V+M GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHQFGRTVLMIGVPFQYTESR 630
>gi|392870657|gb|EAS32475.2| DNA repair helicase rad15 [Coccidioides immitis RS]
Length = 795
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/630 (50%), Positives = 438/630 (69%), Gaps = 1/630 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+Y+ +LK+ LD GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYICDLKKTLDVGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
P + KLIYC+RT+ E+EK L EL+ L Y+ + LG A+GL+SRKNLC++
Sbjct: 61 QHYPSHR-KLIYCSRTMSEIEKALTELRELMKYREQQLGYTEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TAS+V+ + ++E C + EN + + ++PPGV+TL L
Sbjct: 120 VRREKSGTVVDARCRSLTASFVKERKEKGEDVELCLYHENLDLLEPSNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+ F NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNID
Sbjct: 180 IRYGEQHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A R + + +I+ K +DA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDITEDSLRKAGRGANNLGHKIDEMKRSDAAKLQKEYEKLVEGLREADQARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++NPALP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P+SF++
Sbjct: 300 EDQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLHAISETPLSFLSH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +E+ +Q I FATLV TY +GF +I+EP
Sbjct: 360 LKDLTYIERKPLRFCAERLTSLVRTLELMNIEEYRPLQEIATFATLVSTYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL +C DA++A+KPVF+RF SV+ITSGTLSP+++YP++L F V+ S
Sbjct: 420 FESDTATVPNPVLHFTCLDAAIAIKPVFERFGSVIITSGTLSPLEMYPKMLGFQTVLQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG LL+E I PDGIV FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQAQISSAFKIRNDPGVVRNYGNLLLEFSRITPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ VA
Sbjct: 540 SYLYMESIISMWQGMGILDSIWNYKLILVETPDSQESSLALETYRTACCNGRGAILLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
RGKV+EGIDFD HYGR V+ GVPFQYT S
Sbjct: 600 RGKVSEGIDFDHHYGRAVLCIGVPFQYTES 629
>gi|296822250|ref|XP_002850254.1| DNA repair helicase RAD3 [Arthroderma otae CBS 113480]
gi|238837808|gb|EEQ27470.1| DNA repair helicase RAD3 [Arthroderma otae CBS 113480]
Length = 792
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/631 (49%), Positives = 441/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKTI LL+LI +Y
Sbjct: 1 MEFYIDDLPILFPYPRIYPEQYAYMCDLKKVLDAGGHCVLEMPSGTGKTITLLALIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK L+EL L Y+++ LG A+GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALSELHALMKYRSQKLGAVEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ + ++E C + EN + ++PPGV+TL L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKEKGEDVELCIYHENLDLLEPGNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+Q+ NV++YSY YLLDPK+A +SKE+ ++S++VFDEAHNID
Sbjct: 180 IKYGEQYKQCPYFSARRMMQYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A+R + + ++I+ K+TDA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKASRGANNLERKIDEMKSTDAEKLQNEYQKLVEGLQEADEARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+ ++NP LP D+LKE+VPGNIRRAEHF+ L+R ++YL+ R++ + E P+SF++
Sbjct: 300 EEQLMANPVLPDDLLKESVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFLSH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATL TY +GF +I+EP
Sbjct: 360 LKDLTFIERKPLRFCAERLTSLVRTLELVNIEDYQPLQEVATFATLAATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++L F + S
Sbjct: 420 FESDTATVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFDAALQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG +L+E I PDG+V FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNMLLEFCRITPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL + +KL+ +ET D E++LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMESIISMWQGMGILDSVWNYKLILVETPDSQESSLALETYRTACCNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRAVLCIGVPFQYTESR 630
>gi|303317606|ref|XP_003068805.1| DNA repair helicase rad15 , putative [Coccidioides posadasii C735
delta SOWgp]
gi|240108486|gb|EER26660.1| DNA repair helicase rad15 , putative [Coccidioides posadasii C735
delta SOWgp]
gi|320038802|gb|EFW20737.1| DNA repair helicase RAD3 [Coccidioides posadasii str. Silveira]
Length = 795
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/630 (50%), Positives = 438/630 (69%), Gaps = 1/630 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+Y+ +LK+ LD GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYICDLKKTLDVGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
P + KLIYC+RT+ E+EK L EL+ L Y+ + LG A+GL+SRKNLC++
Sbjct: 61 QHYPSHR-KLIYCSRTMSEIEKALTELRELMKYREQQLGYTEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TAS+V+ + ++E C + EN + + ++PPGV+TL L
Sbjct: 120 VRREKSGTVVDARCRSLTASFVKERKEKGEDVELCLYHENLDLLEPSNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+ F NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNID
Sbjct: 180 IRYGEQHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A R + + +I+ K +DA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDITEDSLRKAGRGANNLGHKIDEMKRSDAAKLQKEYEKLVEGLREADQARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++NPALP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P+SF++
Sbjct: 300 EDQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLHAISETPLSFLSH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +E+ +Q I FATLV TY +GF +I+EP
Sbjct: 360 LKDLTYIERKPLRFCAERLTSLVRTLELMNIEEYRPLQEIATFATLVSTYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL +C DA++A+KPVF+RF SV+ITSGTLSP+++YP++L F V+ S
Sbjct: 420 FESDTATVPNPVLHFTCLDAAIAIKPVFERFGSVIITSGTLSPLEMYPKMLGFQTVLQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG LL+E I PDGIV FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQAQISSAFKIRNDPGVVRNYGNLLLEFSRITPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ VA
Sbjct: 540 SYLYMESIISMWQGMGILDSIWNYKLILVETPDSQESSLALETYRTACCNGRGAILLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
RGKV+EGIDFD HYGR V+ GVPFQYT S
Sbjct: 600 RGKVSEGIDFDHHYGRAVLCIGVPFQYTES 629
>gi|398396458|ref|XP_003851687.1| DNA repair helicase [Zymoseptoria tritici IPO323]
gi|339471567|gb|EGP86663.1| hypothetical protein MYCGRDRAFT_43883 [Zymoseptoria tritici IPO323]
Length = 801
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/631 (50%), Positives = 436/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F +ED+ V FPY IYPEQY+YM +LKR LD+ GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIEDLPVLFPYPRIYPEQYAYMCDLKRTLDSGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L Y+ LG +GL+SRKNLC++
Sbjct: 61 QFYPEH-RKLIYCSRTMSEIEKALAELKALMKYRADQLGEVEDFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VD+ CR TA +V+ +++ C + +N + ++PPGV+TL +
Sbjct: 120 VKREKSGSVVDSRCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVWTLDGM 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+QQ CPYF AR M+ F NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNID
Sbjct: 180 LRYGEQQKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A R S + ++I K TDA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKAARGASNLERKITEMKDTDAEKLQNEYAKLVEGLREADEARD 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
A++SNPALP D+LKEA+PGNIRRAEHF L+R ++YL+ R++ +V E P SF+
Sbjct: 300 EGAFMSNPALPDDLLKEAIPGNIRRAEHFTAFLKRFIEYLKTRMKVLHVISETPPSFLQH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+++ +++ +Q + FATLV TY GF +I+EP
Sbjct: 360 LKELTFIEKKPLRFCAERLTSLVRTLELSNIEDYQPLQEVATFATLVATYDTGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ +P+P+L +C DA++A+KPVFDRF SV+ITSGT+SP+++YP++L F VV S
Sbjct: 420 YESDTATVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLGFTAVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F RSDPG RNYG L++E + PDGIV FF
Sbjct: 480 YAMTLARRSFLPMIVTRGSDQGQMSSGFQTRSDPGNIRNYGALIIEFSKLTPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +I+ W GIL ++ + KL+ +ET D ET+LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMESVISMWQGMGILDQVWKSKLILVETPDSQETSLALETYRTACSNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRTVLCIGVPFQYTESR 630
>gi|209879600|ref|XP_002141240.1| DNA repair helicase family protein [Cryptosporidium muris RN66]
gi|209556846|gb|EEA06891.1| DNA repair helicase family protein [Cryptosporidium muris RN66]
Length = 835
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/723 (46%), Positives = 467/723 (64%), Gaps = 96/723 (13%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
F +E+V V+FPYD +YPEQ YM LK+ LDA H +LEMPTGTGKT+ L S ITSY L+
Sbjct: 4 FFIEEVEVFFPYDYVYPEQLEYMKYLKQILDAHSHGVLEMPTGTGKTVTLFSFITSYQLA 63
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGP---------------------A 101
P N +LIYCTRTV EMEK L ELK + NY+ + L
Sbjct: 64 HP-NLGRLIYCTRTVAEMEKALLELKTVINYRIKELQKDKLALQETNNINISTSENQILN 122
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAEN------------ 149
ILAIG+S+R+NLC+NS V++ +RD +DA CR TA WVRA +
Sbjct: 123 GSILAIGMSARRNLCINSSVISNSDRDKIDAMCRSMTAPWVRAKKSSTRLDNDKSGTQVI 182
Query: 150 -----PNIET---------CEFFENYEKAASAAVLPPGVYTLQDLRAFGKQ--------- 186
+IE C ++E ++K S+ +P GVYT+ +LR FGK+
Sbjct: 183 DQSSLQDIEDIIQGNCTDLCPYYEIFDKIWSSDTIPIGVYTIDELRRFGKEWEHPTLKKN 242
Query: 187 QGWCPYFLARHMVQFANVVVYSYQYLLDPKVA------GIISKEM--------------- 225
+CPY+ + ++Q A VVV +YQY LDPKVA G +S+
Sbjct: 243 TPFCPYYSTKRLIQVAKVVVLNYQYTLDPKVAQASLLGGTVSQGFSHGSNINGKQAGSSY 302
Query: 226 -----------QKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
++ S+VVFDEAHNIDN+C EALSV++ RQ L+GA+RNL + EI +
Sbjct: 303 AAALDPELLGSKEPSIVVFDEAHNIDNICTEALSVNINRQVLDGASRNLKSLKNEINKLT 362
Query: 275 ATDAGRLRAEYNRLVEGLALRGNLP---IADAWLSNPALPSDI---LKEAVPGNIRRAEH 328
D RL+ EYNRLV GL G + + + P LP+++ KE +PG+IR+AEH
Sbjct: 363 EIDEKRLQEEYNRLVRGLKSTGQIEDDLVLEELQRFPVLPAEVEKLKKELIPGSIRKAEH 422
Query: 329 FLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEI 388
FL +++++ YL+ + + EGP++F+ + + ID +RFC ERL SLM TL+I
Sbjct: 423 FLLIMKKITLYLQNYIRVFTPKIEGPLTFLNHLESSCMIDVNIIRFCDERLRSLMNTLQI 482
Query: 389 TDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVF 448
D D++ I+ +C F T++GTY++GF II++P+ E + + DP++QLSC D+S+A+KP+
Sbjct: 483 IDMDQYSPIELVCTFCTILGTYSKGFVIIVDPYPE-VTGLYDPIIQLSCLDSSIAMKPIL 541
Query: 449 DRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKF 508
DR+QS+V+TSGTLSP+DLYP+LL F PVVS S M+L R CICPM++TRGSDQ+P+S+++
Sbjct: 542 DRYQSIVLTSGTLSPLDLYPKLLGFDPVVSESLSMTLDRTCICPMIVTRGSDQVPLSSRY 601
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
+ R D + +NYGKL++E+ VPDGIVCFF SY YM++++ W +SGIL +IM+HKLVF
Sbjct: 602 ESREDSIIQQNYGKLVLEISKKVPDGIVCFFPSYLYMEQVLGQWYESGILAQIMEHKLVF 661
Query: 569 IETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
+ET+D+V TTLAL ++RKACD GRG +FFS+ARGKVAEGIDFDRHYGR VI+ G+P+QYT
Sbjct: 662 VETKDIVSTTLALHHFRKACDIGRGGIFFSIARGKVAEGIDFDRHYGRCVILVGIPYQYT 721
Query: 629 LSK 631
LS+
Sbjct: 722 LSR 724
>gi|344228422|gb|EGV60308.1| DNA helicase component of transcription factor b [Candida tenuis
ATCC 10573]
Length = 797
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/642 (48%), Positives = 443/642 (69%), Gaps = 12/642 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+C+LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L Y+ LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KVVYCSRTMSEIEKALIELYNLMEYRANELGFVEDFRGLGLTSRKNLCLHPT 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAE----------NPNIET-CEFFENYEKAASAAV 169
+ VD CR+ T ++ E NP + + C+F EN +
Sbjct: 120 ISKERKGAVVDEKCRRITNGQLKHRIEEGAIDEEAQRSNPEVNSLCKFHENLYDYEQHDL 179
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
+PPGVY+ + L FG+++ CPYF R M+ F N+++YSY YLLDPK+A +SKE+ K+S
Sbjct: 180 IPPGVYSFESLMDFGREKSTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKDS 239
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
+++FDEAHNIDNVCIE+LS+ + TL+ ATR ++++ IE KA D+ +L+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLSDAIEDMKAQDSEKLQNEYEKLV 299
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
EGL + +++NP LP D+L EA+PGNIR+ EHF+ L+R ++YL+ R++ +V
Sbjct: 300 EGLRQAEIARDEELFMANPTLPQDLLDEAIPGNIRKGEHFVSFLKRFIEYLKTRMKVLHV 359
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
E P SF+ + ID+K LRFC ERL L+ TLE+ D ++F ++ I FATLV T
Sbjct: 360 ISETPNSFLQHLKELTFIDRKPLRFCSERLSLLVRTLELNDIEDFTALKDIATFATLVST 419
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
Y +GF +I+EPF+ +P+P+L+ +C DAS+A+KPVFDRF SV+ITSGT+SP+D+YP+
Sbjct: 420 YDKGFQLILEPFETEGATVPNPILRFTCLDASIAMKPVFDRFSSVIITSGTISPLDMYPK 479
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
+LNF V+ RS+ M+L R PM++T+GSDQ+ +S++F++R+DP V RNYG LL+E
Sbjct: 480 MLNFETVIQRSYTMTLDRRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFSK 539
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
I PDG+V FF SY YM+ II+ W G+L E+ ++KL+ +ET D ET+LALD YRKAC+
Sbjct: 540 ITPDGMVVFFPSYLYMESIISMWQTMGVLDEVWKYKLILVETPDAQETSLALDTYRKACN 599
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGAV SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 SGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 641
>gi|268570745|ref|XP_002640826.1| Hypothetical protein CBG15713 [Caenorhabditis briggsae]
Length = 755
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/633 (50%), Positives = 453/633 (71%), Gaps = 10/633 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + V FPYD +YPEQ YM E+K+ALDA GH LLEMP+GTGKT++LLSL+ SY+
Sbjct: 1 MQLDIDGLKVLFPYDYVYPEQVLYMKEVKKALDANGHGLLEMPSGTGKTVSLLSLVLSYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG-PAAKILAIGLSSRKNLCVNS 119
+S P+ KL+YC+RT+ E+EK + E+K+L++Y + G P AKI + +S+RKNLC+N
Sbjct: 61 ISYPDRLDKLVYCSRTIPEIEKCVEEMKVLYDYWEKETGVPVAKI-TVAMSARKNLCINE 119
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
+V A ++VD+AC+K T+S VRA EN IE C+FFEN+E A+ + GV+ L+D
Sbjct: 120 KVAALRFGNTVDSACQKLTSSSVRAKRQENSEIEGCDFFENFE--ANGFPMQNGVWNLED 177
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
LR G+++ CPYF AR+ + A++VVYSY Y+LDPK+A ++SK+ ++SVVVFDEAHNI
Sbjct: 178 LRQLGRERKICPYFTARNAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNI 237
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCIE++SV++ ++ + A + L + Q + R K+ ++ +L+ EY++LVEGL
Sbjct: 238 DNVCIESMSVAISQKNADRALQELQNLEQVVGRIKSANSEKLQNEYDKLVEGLKRAERER 297
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
D L+NP +P DILKEAVPGNIR+A HFL L+R V+Y+R RL T V E P +F+
Sbjct: 298 ANDERLANPCIPDDILKEAVPGNIRQANHFLLFLKRFVEYVRHRLRTHQVLIESPAAFMK 357
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
I I+++ +RFC ERL +L+ TLEITD + + + TLV TY++GFS+I+E
Sbjct: 358 DIQERMCIERRPMRFCAERLANLVRTLEITDNGDVWALSQVTTMCTLVSTYSKGFSVIVE 417
Query: 420 PFD-ERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
P D +M I LSCHDAS+A++PV R QSV+ITSGTLSP+++YP++L+F P V
Sbjct: 418 PQDGSQMATIT-----LSCHDASIAIRPVLHRHQSVIITSGTLSPLEMYPKILDFDPAVV 472
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCF 538
SF M+L R C+ P+V+ RG+DQ+ ++++F+ R+D V RNYG L++EM S+VPDG+V F
Sbjct: 473 ASFTMTLARPCLAPLVVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLVPDGMVVF 532
Query: 539 FVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS 598
F SY YM+ +I W + I+ E+M++KL+FIET D +ET+ AL+ Y +ACD GRGAV FS
Sbjct: 533 FTSYLYMENVIGVWYEQHIIDELMKYKLLFIETNDALETSAALEKYVEACDSGRGAVLFS 592
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
VARGKV+EGIDF H GR VIM G+P+ YT S+
Sbjct: 593 VARGKVSEGIDFSHHLGRCVIMLGIPYMYTESR 625
>gi|326475278|gb|EGD99287.1| DNA repair helicase RAD3 [Trichophyton tonsurans CBS 112818]
Length = 789
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/631 (48%), Positives = 443/631 (70%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKTI LL+LI +Y
Sbjct: 1 MEFFIDDLPILFPYPRIYPEQYAYMCDLKKVLDAGGHCVLEMPSGTGKTITLLALIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK L+EL+ L Y+++ LG A+GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALSELRALMKYRSQKLGVVEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +++ + ++E C + EN + + ++PPGV+TL L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+ + NV++YSY YLLDPK+A +SKE+ ++S++VFDEAHNID
Sbjct: 180 LKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A+R + + ++I+ K++DA +L++EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKASRGANNLERKIDDMKSSDADKLQSEYQKLVEGLREADEARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+ ++NP LP D+LKE+VPGNIRRAEHF+ L+R ++YL+ R++ + E P+SF++
Sbjct: 300 EEQLMANPVLPDDLLKESVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFLSH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATL TY +GF +I+EP
Sbjct: 360 LKDLTFIERKPLRFCAERLTSLVRTLELVNIEDYQPLQEVATFATLAATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++L F + S
Sbjct: 420 FESDTATVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFDAALQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG +L+E I PDG+V FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNMLLEFCRITPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL + +KL+ +ET D E++LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMESIISMWQGMGILDSVWNYKLILVETPDSQESSLALETYRTACCNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRTVLCIGVPFQYTESR 630
>gi|367055120|ref|XP_003657938.1| hypothetical protein THITE_2124189 [Thielavia terrestris NRRL 8126]
gi|347005204|gb|AEO71602.1| hypothetical protein THITE_2124189 [Thielavia terrestris NRRL 8126]
Length = 800
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/631 (49%), Positives = 438/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM++LK+ LDA G+C+LEMP+GTGKT+ LLSLI +Y
Sbjct: 1 MEFNIDDLPVLFPYPRIYPEQYAYMVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
P + KLIYC+RT+ E+EK L ELK L ++ + LG + +GL+SRKNLC++
Sbjct: 61 QYYPSHR-KLIYCSRTMSEIEKALVELKALMKFRAQRLGHEEEFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ + VDA CR TA +V+ + ++E C + +N + ++P G++TL L
Sbjct: 120 VKREKSGNVVDARCRSLTAGFVKEKKNKGEDVEVCVYHDNLDLLEPHNLIPNGIWTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+Q+ NV++YSY YLLDPK+A +SK++ K+ +VVFDEAHNID
Sbjct: 180 LRYGEQHKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS + +L ATR + I + +D +L+ EY +LVEGL +
Sbjct: 240 NVCIESLSTDITEDSLRRATRGAQNLENRINEMRESDQQKLQDEYEKLVEGLRGADDGRQ 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D++++NP LP D+LKEAVPGNIRRAEHF+ LRR ++YL+ R++ V E P SF+A
Sbjct: 300 EDSFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLAH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 LKEYTFIEKKPLRFCAERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ +P+PVL +C DA++A+KPVFDRF SV+ITSGT+SP+++YP++LNF VV S
Sbjct: 420 YESDTAEVPNPVLHFTCLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFPTVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +ST F +R++P V RNYG LL E I PDG+V FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQASISTSFQVRNEPSVVRNYGNLLTEFAKITPDGMVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL E+ ++KL+ +ET D ET+LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMESIISMWQGMGILDEVWKYKLILVETPDAQETSLALETYRTACCNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHQYGRTVLCVGVPFQYTESR 630
>gi|327294313|ref|XP_003231852.1| DNA repair helicase RAD3 [Trichophyton rubrum CBS 118892]
gi|326465797|gb|EGD91250.1| DNA repair helicase RAD3 [Trichophyton rubrum CBS 118892]
Length = 790
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/631 (48%), Positives = 442/631 (70%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKTI LL+LI +Y
Sbjct: 1 MEFFIDDLPILFPYPRIYPEQYAYMCDLKKVLDAGGHCVLEMPSGTGKTITLLALIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK L+EL+ L Y+++ LG A+GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALSELRALMKYRSQKLGVVEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +++ + ++E C + EN + + ++PPGV+TL L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+ + NV++YSY YLLDPK+A +SKE+ ++S++VFDEAHNID
Sbjct: 180 LKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A+R + + ++I+ K++DA RL+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKASRGANNLERKIDDMKSSDADRLQNEYQKLVEGLREADEARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+ ++NP LP D+LKE+VPGNIRRAEHF+ L+R ++YL+ R++ + E P+SF++
Sbjct: 300 EEQLMANPVLPDDLLKESVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFLSH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATL TY +GF +I+EP
Sbjct: 360 LKDLTFIERKPLRFCAERLTSLVRTLELVNIEDYQPLQEVATFATLAATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++L F + S
Sbjct: 420 FESDTATVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFDAALQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG +L+E I PDG+V FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNMLLEFCRITPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL + +KL+ +ET D E++LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMESIISMWQGMGILDSVWNYKLILVETPDSQESSLALETYRTACCNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRTVLCIGVPFQYTESR 630
>gi|324507092|gb|ADY43014.1| TFIIH basal transcription factor complex helicase XPD subunit,
partial [Ascaris suum]
Length = 761
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/631 (49%), Positives = 441/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ YM E+K+ LDA+GH LLEMP+GTGKTI+LLSL+ +Y+
Sbjct: 1 MKIDVDGLEVYFPYDYIYPEQVLYMEEVKKTLDAQGHALLEMPSGTGKTISLLSLVLAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L P+ KLIYC+RT+ E+EK + EL+ L Y + G +LA+ +S+RKNLC+N
Sbjct: 61 LKFPDKLDKLIYCSRTIPEIEKCVEELRNLFKYYEQVNGKRPALLALAISARKNLCINES 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +VD AC++ TA +VRA P++ C FFE ++ A VLP GVY L +L
Sbjct: 121 VACLRQGSAVDGACQRLTAGFVRAKRKLQPDLPACSFFEKFD-AQREVVLPAGVYNLSNL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
R +G Q+G CPYF+AR AN++VYSY Y+LDPK+A ++SK + S VVFDEAHNID
Sbjct: 180 RKWGHQKGVCPYFMARANADRANIIVYSYHYILDPKIAELVSKNFSRRSCVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE++SVS+ + T+E A + ++ +++ ++R K ++ RL+ EY RLVEGL
Sbjct: 240 NVCIESMSVSLTKSTVEKAMQKVALLDKHVQRLKEENSERLQNEYERLVEGLRQVEQDRA 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP IL+EAVPG+IR A+HF++ LRR ++YL+ R+ + V E P SF+
Sbjct: 300 NDETLANPVLPDSILQEAVPGSIRTAQHFINFLRRFIEYLKYRMRSTTVLVESPASFLFD 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I I+++ LRFC ER SL TLE+ D +F + + +FATLV +Y GFS+IIEP
Sbjct: 360 IQERMYIERRPLRFCTERFASLARTLELADISDFHSLVLVTNFATLVSSYGPGFSLIIEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
DE+ + L+C DAS+A++P+ RFQSV+ITSGTLSP+++YP++L+F P V S
Sbjct: 420 LDEKSGDAHSCTMHLNCMDASIAIRPILQRFQSVIITSGTLSPLEMYPKILDFDPAVMAS 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
M+L R CI P+++++G+DQ+ ++++F+ R D V RNYG L++E+ SIVPDG+V FF
Sbjct: 480 LSMTLARPCIAPLIVSKGNDQVAITSRFESRDDAAVIRNYGNLVLEVASIVPDGVVVFFT 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +++ W D I+ E+M+HKL+FIET D +ET++AL+ Y +ACD GRGA+ FSVA
Sbjct: 540 SYVYMENVVSIWYDQRIIDELMKHKLLFIETTDALETSVALEKYVEACDSGRGAILFSVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF H GR VIM G+P+ YT S+
Sbjct: 600 RGKVSEGIDFSHHLGRAVIMLGIPYVYTESR 630
>gi|315056317|ref|XP_003177533.1| DNA repair helicase RAD3 [Arthroderma gypseum CBS 118893]
gi|311339379|gb|EFQ98581.1| DNA repair helicase RAD3 [Arthroderma gypseum CBS 118893]
Length = 790
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/631 (48%), Positives = 440/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKTI LL+LI +Y
Sbjct: 1 MEFLIDDLPILFPYPRIYPEQYAYMCDLKKVLDAGGHCVLEMPSGTGKTITLLALIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK L EL+ L Y+++ LG A+GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALNELRALMKYRSQKLGVVEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +++ + ++E C + EN + + ++PPGV+TL L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+ + NV++YSY YLLDPK+A +SKE+ ++S++VFDEAHNID
Sbjct: 180 IKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A R S + ++I+ K++DA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKAGRGASNLERKIDEMKSSDADKLQNEYQKLVEGLREADEARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+ ++NP LP D+LKE+VPGNIRRAEHF+ L+R ++YL+ R++ + E P+SF++
Sbjct: 300 EEQLMANPVLPDDLLKESVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFLSH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATL TY +GF +I+EP
Sbjct: 360 LKDLTFIERKPLRFCAERLTSLVRTLELVNIEDYQPLQEVATFATLAATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++L F + S
Sbjct: 420 FESDTATVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFDAALQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG +L+E I PDG+V FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNMLLEFCRITPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL + +KL+ +ET D E++LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMESIISMWQGMGILDSVWNYKLILVETPDSQESSLALETYRTACCNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRTVLCIGVPFQYTESR 630
>gi|75858956|ref|XP_868818.1| hypothetical protein AN9436.2 [Aspergillus nidulans FGSC A4]
gi|40747660|gb|EAA66816.1| hypothetical protein AN9436.2 [Aspergillus nidulans FGSC A4]
Length = 797
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/637 (50%), Positives = 440/637 (69%), Gaps = 7/637 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT+ LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAEL+ L +++ LG A+GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALAELRELMKFRSEQLGYTEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ + ++E C + EN + ++PPGV+TL L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKEKGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHM------VQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
+G+Q CPYF AR M + + NV++YSY YLLDPK+A +SKE K+ +VVFD
Sbjct: 180 LNYGEQHKQCPYFSARRMPLTPVQMPYCNVIIYSYHYLLDPKIAERVSKEFSKDCIVVFD 239
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLAL 294
EAHNIDNVCIE+LS+ + +L ATR + + ++I+ K++DA +L EY +LVEGL
Sbjct: 240 EAHNIDNVCIESLSIDITEDSLRKATRGANNLERKIQDVKSSDAEKLNNEYMKLVEGLRE 299
Query: 295 RGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGP 354
D ++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P
Sbjct: 300 AEQARDEDQFISNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETP 359
Query: 355 VSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGF 414
+SF+ + I++K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY +GF
Sbjct: 360 LSFLNHVKELTFIERKPLRFCAERLTSLVRTLELINIEDYQPLQEVATFATLVSTYDKGF 419
Query: 415 SIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFH 474
+I+EPF+ +P+PVL +C DA++A+KPVFDRF SVVITSGTLSP+++YP++L F
Sbjct: 420 LLILEPFESEAATVPNPVLHFTCLDAAIAIKPVFDRFSSVVITSGTLSPLEMYPKMLGFT 479
Query: 475 PVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDG 534
V+ S+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG +++E I PDG
Sbjct: 480 TVMQESYSMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNIVLEFSRITPDG 539
Query: 535 IVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGA 594
+V FF SY YM+ II+ W GIL I +KL+ +ET D E++LAL+ YR AC GRGA
Sbjct: 540 VVVFFPSYLYMESIISMWQGMGILDSIWNYKLILVETPDAQESSLALETYRTACCNGRGA 599
Query: 595 VFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+ F VARGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 LLFCVARGKVSEGIDFDHHYGRAVLCIGVPFQYTESR 636
>gi|452981603|gb|EME81363.1| hypothetical protein MYCFIDRAFT_189512 [Pseudocercospora fijiensis
CIRAD86]
Length = 776
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/631 (50%), Positives = 434/631 (68%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F + D+ V FPY IYPEQY YM LK+ LD+ GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFYIGDLPVLFPYPRIYPEQYEYMCALKQTLDSGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L Y++ LG A +GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALAELKALMKYRSDQLGHAEDFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA++V+ +++ C + +N + ++PPGV+TL +
Sbjct: 120 VKQEKSGSVVDARCRSLTAAFVKEKKDRGEDVDVCIYHDNLDLLEPHNLIPPGVWTLDGM 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+QQ CPYF AR M+ F NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 LRYGEQQKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A R + + +EI K TDA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKAARGAANLEREITTMKQTDADKLQNEYAKLVEGLREADAARD 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
A++SNPALP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ +V E P SF+
Sbjct: 300 EGAFMSNPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLHVISETPPSFLQH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATL TY GF +I+EP
Sbjct: 360 LKELTFIERKPLRFCAERLTSLVRTLELTNIEDYQPLQEVATFATLAATYDTGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ +P+P+L +C DA++A+KPVFDRF SV+ITSGT+SP+++YP++L F VV S
Sbjct: 420 YESDTATVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLGFECVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F R+DP RNYG LL+E + PDGIV FF
Sbjct: 480 YTMTLARKSFLPMIVTRGSDQGQISSGFQTRNDPANVRNYGNLLIEFSKLTPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +I+ W GIL + + KL+ +ET D ET+LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMESVISMWQTMGILDSVWKSKLILVETPDSQETSLALETYRTACSNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRTVLCIGVPFQYTESR 630
>gi|310798566|gb|EFQ33459.1| DNA repair helicase [Glomerella graminicola M1.001]
Length = 791
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/631 (50%), Positives = 437/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDELPVIFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L Y+ LG + +GL+SRKNLC++
Sbjct: 61 QHNPEHR-KLIYCSRTMSEIEKALAELKALMKYRAEELGEEEEFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ +++ C + +N + ++P GV+T + L
Sbjct: 120 VKQEKSGAIVDARCRSLTAGFVKEKKDRGESVDVCVYHDNLDLLEPHNLIPNGVWTFEGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+QF NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 LRYGEQHKQCPYFTARRMMQFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS + +L ATR + + I + TD +L+ EY +LVEGL
Sbjct: 240 NVCIESLSTDITEDSLRKATRGAQNLERRIAEMRDTDQEQLQNEYQKLVEGLRGADEARQ 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA+++NPALP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P SF+A
Sbjct: 300 EDAFMANPALPDDLLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVRHTISETPPSFLAH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 LKEYTFIEKKPLRFCAERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL +C DA++A+KPVFDRF SV+ITSGT+SP+++YP++L F VV S
Sbjct: 420 FESETAEVPNPVLHFTCLDAAIAIKPVFDRFSSVIITSGTMSPLEMYPKMLGFSTVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +ST F +R++P V RNYG LL E I PDG+V FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQSSISTSFQVRNEPSVVRNYGTLLTEFAKITPDGMVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W IL+E+ ++KL+ +ET D ET+LAL+ YR AC GRGA+ VA
Sbjct: 540 SYLYMESIISMWQGMNILEEVWKYKLILVETPDAQETSLALETYRTACCNGRGAILLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHQYGRTVLCIGVPFQYTESR 630
>gi|330947928|ref|XP_003307004.1| hypothetical protein PTT_20325 [Pyrenophora teres f. teres 0-1]
gi|311315183|gb|EFQ84891.1| hypothetical protein PTT_20325 [Pyrenophora teres f. teres 0-1]
Length = 796
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/631 (50%), Positives = 438/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ V FPY +YPEQY+YM +LKR LD GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFYIDNLPVLFPYPRVYPEQYAYMCDLKRTLDQGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE KLIYC+RT+ E+EK LAELK L Y+T LG +GL+SRKNLC++
Sbjct: 61 QHYPEKR-KLIYCSRTMSEIEKALAELKALMKYRTTELGYEEDFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ +E C + EN + ++PPGV+T +
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEPVELCVYHENLDLLEPHNLIPPGVWTFDGM 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+QQ CPYF AR M+ NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNID
Sbjct: 180 LKYGEQQKQCPYFTARRMMPHCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + L AT+ ++ ++++I K++DA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDVLRKATKGVNNLDRKITEMKSSDAEKLQNEYAKLVEGLRAADEARN 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA+++NPALP D+L EAVPGNIRRAEHF+ L+R ++YL+ R++ NV + P F+
Sbjct: 300 EDAFMANPALPDDLLTEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLNVVADTPPEFLKH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY GF +IIEP
Sbjct: 360 LRDLTFIERKPLRFCAERLTSLVRTLELTNIEDYQPLQEVATFATLVATYETGFLLIIEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL L+C DA++A+KPVF+RF SV++TSGT+SP+D+YPR+LNF+ VV S
Sbjct: 420 FESATATVPNPVLHLTCLDAAIAIKPVFERFYSVIVTSGTMSPLDMYPRMLNFNTVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+LTR PM++ RG+DQ V+++F+ R+D V RN+G LL+E + PDG+V FF
Sbjct: 480 FTMTLTRKSFLPMIVDRGNDQNQVTSQFEHRNDLQVQRNFGNLLIEFCKLTPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W IL + ++KL+ +ET D ET LAL+ +R AC+ GRGAV VA
Sbjct: 540 SYLYMESIISAWQGMEILDTVWKYKLILVETPDAQETALALETFRTACNNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR VI GVP+QYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRTVICMGVPYQYTESR 630
>gi|350629867|gb|EHA18240.1| DNA repair helicase, subunit of TFIIH [Aspergillus niger ATCC 1015]
Length = 811
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/641 (49%), Positives = 440/641 (68%), Gaps = 11/641 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L ++ + LG A+GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALAELKALMKFRAKELGYTEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + EN + ++PPGV+TL L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMV----------QFANVVVYSYQYLLDPKVAGIISKEMQKESV 230
+G++ CPYF AR M+ F NV++YSY YLLDPK+A +S+E+ K+ +
Sbjct: 180 LKYGEEHKQCPYFSARRMLLQAYSQIVQMPFCNVIIYSYHYLLDPKIAERVSRELSKDCI 239
Query: 231 VVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVE 290
VVFDEAHNIDNVCIE+LS+ + +L ATR + + ++I K +DA +L+ EY++LVE
Sbjct: 240 VVFDEAHNIDNVCIESLSIDLTEDSLRKATRGANNLERKINEMKTSDAEKLQNEYSKLVE 299
Query: 291 GLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVE 350
GL D ++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ +
Sbjct: 300 GLQAAEQAREEDQFISNPVLPDDLLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVMHTI 359
Query: 351 KEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY 410
E P SF+ + I++K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY
Sbjct: 360 SETPPSFLTHVKDLTYIERKPLRFCAERLTSLVRTLELINIEDYQPLQEVATFATLVATY 419
Query: 411 TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRL 470
+GF +I+EPF+ +P+PVL +C DA++A+KPVF+RF SV+ITSGTLSP+++YP++
Sbjct: 420 EKGFLLILEPFESEAATVPNPVLHFTCLDAAIAIKPVFERFSSVIITSGTLSPLEMYPKM 479
Query: 471 LNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSI 530
L F+ V+ S+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG L++E I
Sbjct: 480 LGFNAVMQESYSMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNLVLEFSRI 539
Query: 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDC 590
PDG+V FF SY YM+ II+ W GIL I +KL+ +ET D E++LAL+ YR AC
Sbjct: 540 TPDGVVVFFPSYLYMESIISMWQGMGILDSIWNYKLILVETPDAQESSLALETYRTACCN 599
Query: 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGA+ VARGKV+EGIDFD HYGR VI GVPFQYT S+
Sbjct: 600 GRGALLLCVARGKVSEGIDFDHHYGRAVINIGVPFQYTESR 640
>gi|239607217|gb|EEQ84204.1| DNA repair helicase RAD3 [Ajellomyces dermatitidis ER-3]
Length = 779
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/631 (50%), Positives = 436/631 (69%), Gaps = 19/631 (3%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MQFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+PE KLIYC+RT+ E+EK LAELK L Y+TR LG A +GL+SRKNLC++
Sbjct: 61 QHRPEQR-KLIYCSRTMSEIEKALAELKALMKYRTRQLGYAEDFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA + N + + ++PPGV+TL D+
Sbjct: 120 VKREKSGAVVDARCRSLTAGF------------------NLDLLEPSNLVPPGVFTLDDI 161
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF R M+ F NV++YSY YLLDPK+A +S+E+ K+S+VVFDEAHNID
Sbjct: 162 IKYGEQHKQCPYFSIRRMMPFCNVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 221
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A+R + + ++IE K++DA +L+ EY +LVEGL
Sbjct: 222 NVCIESLSIDLTEDSLRKASRGATNLERKIEEMKSSDAEKLQNEYQKLVEGLREADEARQ 281
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+ ++NPALP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P+SF+A
Sbjct: 282 EEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKITHTISETPLSFLAH 341
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATL TY +GF +I+EP
Sbjct: 342 LKDLTFIERKPLRFCAERLASLVRTLELMNLEDYQPLQQVAAFATLAATYEKGFLLILEP 401
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L +C DA++A+KPVFDRF SV++TSGTLSP+++YP++L F V+ S
Sbjct: 402 FESETATVPNPILHFTCLDAAIAIKPVFDRFSSVIVTSGTLSPLEMYPKMLKFTTVLQES 461
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PMV+TRGSDQ +S+ F +R+DPGV RNYG LL+E I PDGIV FF
Sbjct: 462 YTMTLARRSFLPMVVTRGSDQAQISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFP 521
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL + +KL+ +ET D E++LAL+ YR AC GRGAV VA
Sbjct: 522 SYLYMESIISMWQGMGILDLVWNYKLILVETPDSQESSLALETYRTACCNGRGAVLLCVA 581
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR VI GVPFQYT S+
Sbjct: 582 RGKVSEGIDFDHHYGRAVICIGVPFQYTESR 612
>gi|452000477|gb|EMD92938.1| hypothetical protein COCHEDRAFT_1133207 [Cochliobolus
heterostrophus C5]
Length = 799
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/631 (49%), Positives = 440/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++ + V FPY +YPEQY+YM +LKR LD GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFYIDSLPVLFPYPRVYPEQYAYMCDLKRTLDQGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE KLIYC+RT+ E+EK LAELK L Y+T LG + +GL+SRKNLC++
Sbjct: 61 QHYPEKR-KLIYCSRTMSEIEKALAELKALMKYRTTELGYEEEFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + EN + ++PPGV+T +
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLIPPGVWTFDGI 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+QQ CPYF AR M+ + NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNID
Sbjct: 180 LKYGEQQKQCPYFTARRMMPYCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + L AT+ ++ ++++I K++DA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDVLRKATKGVNNLDRKITEMKSSDAEKLQNEYAKLVEGLRAADEARN 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+A+++NPALP D+L EAVPGNIRRAEHF+ L+R ++YL+ R++ NV + P F+
Sbjct: 300 EEAFMANPALPDDLLTEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLNVVADTPPEFLKH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY GF +IIEP
Sbjct: 360 LKDLTFIERKPLRFCAERLTSLVRTLELTNIEDYQPLQEVATFATLVATYETGFLLIIEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL L+C DA++A+KPVF+RF SV++TSGT+SP+D+YPR+LNF+ VV S
Sbjct: 420 FESATATVPNPVLHLTCLDAAIAIKPVFERFYSVIVTSGTMSPLDMYPRMLNFNTVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+LTR PM++ RG+DQ V+++F+ R+D V RN+G LL+E + PDG+V FF
Sbjct: 480 FTMTLTRKSFLPMIVDRGNDQNQVTSQFEHRNDLQVQRNFGNLLIEFCKLTPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W IL + ++KL+ +ET D ET LAL+ +R AC+ GRGAV VA
Sbjct: 540 SYLYMESIISAWQGMEILDTVWKYKLILVETPDAQETALALETFRTACNNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVP+QYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRTVLCMGVPYQYTESR 630
>gi|320593951|gb|EFX06354.1| tfiih complex helicase [Grosmannia clavigera kw1407]
Length = 793
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/631 (49%), Positives = 433/631 (68%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPY IYP SYM +LKR LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFNIDDLPILFPYPRIYPVSNSYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
P KLIYC+RT+ E+EK LAELK L Y+T+ LG + +GL+SRKNLC++
Sbjct: 61 QYYP-GQRKLIYCSRTMSEIEKALAELKALMKYRTQELGYEEEFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V ++ C + +N +K ++P GV+TL L
Sbjct: 120 VKREKSGSVVDARCRSLTAGFVIEKKERGEDVNVCIYHDNLDKLEPHNLIPNGVWTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF +R M+QF NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNID
Sbjct: 180 LRYGEEHKQCPYFTSRRMMQFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS + +L ATR + ++I + TD +L EY +LV+GL
Sbjct: 240 NVCIESLSTDITEDSLRKATRGAQNLEKKINEMRETDQKQLENEYQKLVQGLREADEARQ 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA+++NP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ V E P SF+A
Sbjct: 300 EDAFMTNPTLPEDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVRQVISETPPSFLAH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + I++K LRFC ERL SL+ TLE+T+ +++ ++ + FATLV TY +GF +I+EP
Sbjct: 360 LKEYTFIEKKPLRFCAERLASLVRTLELTNIEDYQPLREVATFATLVATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL +C DA++A+KPVF+RF SV+ITSGT+SP+++YP++L F+ VV S
Sbjct: 420 FESDTAEVPNPVLHFTCLDAAIAIKPVFERFSSVIITSGTISPLEMYPKMLGFNTVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +ST F +R++P V RNYG LL E I PDG+V FF
Sbjct: 480 YTMTLARRSFLPMIVTRGSDQAAMSTSFQVRNEPSVVRNYGTLLTEFAKITPDGLVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL E+ ++KL+ +ET D ET+LAL+ YR AC GRGA+ VA
Sbjct: 540 SYLYMESIISMWQGMGILDEVWKYKLILVETPDAQETSLALETYRTACCNGRGAILLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHQYGRTVLSMGVPFQYTESR 630
>gi|66362610|ref|XP_628271.1| RAD3'DEXDc+HELICc protein' [Cryptosporidium parvum Iowa II]
gi|46229591|gb|EAK90409.1| RAD3'DEXDc+HELICc protein' [Cryptosporidium parvum Iowa II]
Length = 841
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/733 (46%), Positives = 471/733 (64%), Gaps = 107/733 (14%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
F +E++ V+FPYDN+YPEQ YM LK+ LDA H +LEMPTGTGKT+ LLS ITSY L
Sbjct: 4 FFIEELEVFFPYDNVYPEQLEYMKYLKQILDAHSHGVLEMPTGTGKTVTLLSFITSYQLV 63
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG----------------------- 99
P N KLIYCTRTV EMEK L ELK + +Y + +
Sbjct: 64 HP-NMGKLIYCTRTVAEMEKALQELKTVVDYCKKEIENDKIKLEQEIKSENNSSLASVSE 122
Query: 100 ---PAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL----------- 145
AA IL IG+++R+N+C+N RV +RD +D+ CR TA WVRA
Sbjct: 123 SRFSAASILGIGMTARRNMCINPRVSVHADRDKIDSMCRSMTAPWVRAKHQMEARERSAL 182
Query: 146 ---------AAENPNIET---------CEFFENYEKAASAAVLPPGVYTLQDLRAF---- 183
E +IE C ++E YE+ S+ ++P G+YT+ + + F
Sbjct: 183 SEGDANSSKMTEIADIEEMLESGCTTLCPYYEAYERVWSSDLVPTGIYTIDEFKDFSKNW 242
Query: 184 -----GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVA-------GIISK-------- 223
GK+ +CPYF ++ ++Q A VVV +YQY+LDPKVA G +S+
Sbjct: 243 EHPILGKKIQFCPYFASKRLIQTAKVVVLNYQYILDPKVAQASLLGGGTVSQGFSHGANP 302
Query: 224 -----------------EMQKE-SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
E KE SVVVFDEAHNIDNVCIEALSV++ RQ L GA RNL
Sbjct: 303 NGLSLGSKFAASLLPEQEGTKEPSVVVFDEAHNIDNVCIEALSVNMNRQILSGAARNLRT 362
Query: 266 INQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSN----PALPSD---ILKEA 318
+ EIE + D RL+ EY RL++GL G + +A L + P LP + I K
Sbjct: 363 LKSEIESLSSLDEQRLQDEYTRLIQGLRNSGQVQ-DEAVLEDLERFPVLPEEMEKIKKGL 421
Query: 319 VPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYER 378
+PG+IRRAEHF+ ++++L+ YL+ + + EGP++FV I A I L+FC ER
Sbjct: 422 IPGSIRRAEHFITIMKKLILYLQEYIRVYSTRIEGPLTFVKHIEASCYIQSGLLKFCDER 481
Query: 379 LHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCH 438
L SL+ TL I D+D++ ++ +C F T++G+Y++GF +I++P+ E + + DPV+QLSC
Sbjct: 482 LRSLLNTLRIVDSDQYSSLELVCTFFTILGSYSKGFIVIVDPYPE-VSGLYDPVIQLSCL 540
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRG 498
D+S+A++P+ R+QS+V+TSGTLSP+DLYP+LL F PVVS+S M+L R CICP+++TRG
Sbjct: 541 DSSIAMRPILKRYQSIVLTSGTLSPLDLYPKLLGFIPVVSQSLTMTLDRTCICPLIVTRG 600
Query: 499 SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGIL 558
SDQ P+S+KF+ R+D + +NYGKL++E+ VPDG+VCFF SY YM+++++ W +SG+L
Sbjct: 601 SDQTPLSSKFESRADVSIQQNYGKLILEITKKVPDGVVCFFSSYLYMEQMLSQWYESGLL 660
Query: 559 KEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLV 618
+IM+HKLVF+ET+D+V TTLAL +YRKACD GRGA+FFS+ARGKVAEGIDFDRHYGR V
Sbjct: 661 AQIMEHKLVFVETKDIVSTTLALHHYRKACDIGRGAIFFSIARGKVAEGIDFDRHYGRCV 720
Query: 619 IMFGVPFQYTLSK 631
+M G+P+QYTLSK
Sbjct: 721 VMVGIPYQYTLSK 733
>gi|451850440|gb|EMD63742.1| hypothetical protein COCSADRAFT_37505 [Cochliobolus sativus ND90Pr]
Length = 798
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/631 (49%), Positives = 440/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++ + V FPY +YPEQY+YM +LKR LD GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFYIDSLPVLFPYPRVYPEQYAYMCDLKRTLDQGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE KLIYC+RT+ E+EK LAELK L Y+T LG + +GL+SRKNLC++
Sbjct: 61 QHYPEKR-KLIYCSRTMSEIEKALAELKALMKYRTTELGYEEEFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + EN + ++PPGV+T +
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLIPPGVWTFDGI 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+QQ CPYF AR M+ + NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNID
Sbjct: 180 LKYGEQQKQCPYFTARRMMPYCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + L AT+ ++ ++++I K++DA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDVLRKATKGVNNLDRKITEMKSSDAEKLQNEYAKLVEGLRAADEARN 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+A+++NPALP D+L EAVPGNIRRAEHF+ L+R ++YL+ R++ NV + P F+
Sbjct: 300 EEAFMANPALPDDLLTEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLNVVADTPPEFLKH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY GF +IIEP
Sbjct: 360 LKDLTFIERKPLRFCAERLTSLVRTLELTNIEDYQPLQEVATFATLVATYETGFLLIIEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL L+C DA++A+KPVF+RF SV++TSGT+SP+D+YPR+LNF+ VV S
Sbjct: 420 FESATATVPNPVLHLTCLDAAIAIKPVFERFYSVIVTSGTMSPLDMYPRMLNFNTVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+LTR PM++ RG+DQ V+++F+ R+D V RN+G LL+E + PDG+V FF
Sbjct: 480 FTMTLTRKSFLPMIVDRGNDQNQVTSQFEHRNDLQVQRNFGNLLIEFCKLTPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W IL + ++KL+ +ET D ET LAL+ +R AC+ GRGAV VA
Sbjct: 540 SYLYMESIISAWQGMEILDTVWKYKLILVETPDAQETALALETFRTACNNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVP+QYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRTVLCMGVPYQYTESR 630
>gi|344299882|gb|EGW30235.1| DNA helicase component of transcription factor b [Spathaspora
passalidarum NRRL Y-27907]
Length = 792
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/642 (48%), Positives = 439/642 (68%), Gaps = 12/642 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+C+LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFFIDDLPVLFPYPKIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE K++YC+RT+ E+EK L EL L Y+ LG +GL+SRKNLC++
Sbjct: 61 MHYPEQR-KIVYCSRTMSEIEKALIELYKLMEYRANELGYVEDFRGLGLTSRKNLCLHPT 119
Query: 121 VLAAENRDSVDAACRKRTASWVR----------ALAAENPNIET-CEFFENYEKAASAAV 169
+ VD CR+ T ++ A+NP + + C F EN E +
Sbjct: 120 ISKERKGVVVDEKCRRITNGQLKNKIEKGMISEQQQADNPEVNSLCSFHENLEDMDQHDL 179
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
+PPGVY+ L + KQ+G CPYF R M+ F N+++YSY YLLDPK+A +SKE+ K+S
Sbjct: 180 IPPGVYSFDGLLKYCKQRGTCPYFTVRRMMPFCNIIIYSYHYLLDPKIADRVSKELSKDS 239
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
+V+FDEAHNIDNVCIE+LS+ + TL+ ATR +++ IE KA D+ +L+ EY +LV
Sbjct: 240 IVIFDEAHNIDNVCIESLSLDLTEDTLKRATRGANKLGDAIEEMKAQDSEKLQNEYEQLV 299
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
EGL + ++SNP LP D+L EA+PGNIR+ EHF+ L+R ++YL+ R++ +V
Sbjct: 300 EGLRQAEIARNEELFMSNPILPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHV 359
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
E P+SF+ + ID+K LRFC ERL L+ TLE+ + ++F ++ I FATLV T
Sbjct: 360 ISETPISFLKHLKELTYIDRKPLRFCSERLSLLVRTLELAEIEDFNALKDIATFATLVST 419
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
Y GF +I+EP++ +P+P+L +C DAS+A+KPVF+RF S++ITSGT+SP+D+YP+
Sbjct: 420 YDTGFQLILEPYETEGSSVPNPILHFTCLDASIAIKPVFERFYSIIITSGTISPLDMYPK 479
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
+LNF V+ S+ M+L R PM++T+GSDQ+ +S++F++R+DP V RNYG LLVE
Sbjct: 480 MLNFQTVIQESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLVEFSK 539
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
I PDG+V FF SY YM+ II+ W + G+L E+ ++KL+ +ET D ET+LAL+ YRKAC
Sbjct: 540 ITPDGMVVFFPSYLYMESIISMWQNMGVLDEVWKYKLILVETPDAQETSLALETYRKACS 599
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGAV SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 NGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 641
>gi|67601888|ref|XP_666434.1| DNA repair protein-related [Cryptosporidium hominis TU502]
gi|54657424|gb|EAL36199.1| DNA repair protein-related [Cryptosporidium hominis]
Length = 841
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/733 (46%), Positives = 471/733 (64%), Gaps = 107/733 (14%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
F +E++ V+FPYDN+YPEQ YM LK+ LDA H +LEMPTGTGKT+ LLS ITSY L
Sbjct: 4 FFIEELEVFFPYDNVYPEQLEYMKYLKQILDAHSHGVLEMPTGTGKTVTLLSFITSYQLV 63
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG----------------------- 99
P N KLIYCTRTV EMEK L ELK + +Y + +
Sbjct: 64 HP-NMGKLIYCTRTVAEMEKALQELKTVVDYCKKEIENDKIKLELEIKSENNSSFASVSE 122
Query: 100 ---PAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL----------- 145
AA IL IG+++R+N+C+N RV +RD +D+ CR TA WVRA
Sbjct: 123 SRLSAASILGIGMTARRNMCINPRVSVHADRDKIDSMCRSMTAPWVRAKHQMEARERNAL 182
Query: 146 ---------AAENPNIET---------CEFFENYEKAASAAVLPPGVYTLQDLRAF---- 183
E +IE C ++E YE+ S+ ++P G+YT+ + + F
Sbjct: 183 SEGDTNSSKMTEIADIEEMLESGCTTLCPYYEAYERVWSSDLVPTGIYTIDEFKDFSKNW 242
Query: 184 -----GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVA-------GIISK-------- 223
GK+ +CPYF ++ ++Q A VVV +YQY+LDPKVA G +S+
Sbjct: 243 EHPILGKKIQFCPYFASKRLIQTAKVVVLNYQYILDPKVAQASLLGGGTVSQGFSHGANP 302
Query: 224 -----------------EMQKE-SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
E KE SVVVFDEAHNIDNVCIEALSV++ RQ L GA RNL
Sbjct: 303 NGLSLGSKFAASLLPEQEGTKEPSVVVFDEAHNIDNVCIEALSVNMNRQILSGAARNLRT 362
Query: 266 INQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSN----PALPSD---ILKEA 318
+ EIE + D RL+ EY RL++GL G + +A L + P LP + I K
Sbjct: 363 LKSEIESLSSLDEQRLQDEYTRLIQGLRNSGQVQ-DEAVLEDLERFPVLPEEMEKIKKGL 421
Query: 319 VPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYER 378
+PG+IRRAEHF+ ++++L+ YL+ + + EGP++FV I A I L+FC ER
Sbjct: 422 IPGSIRRAEHFITIMKKLILYLQEYIRVYSTRIEGPLTFVKHIEASCYIQSGLLKFCDER 481
Query: 379 LHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCH 438
L SL+ TL I D+D++ ++ +C F T++G+Y++GF +I++P+ E + + DPV+QLSC
Sbjct: 482 LRSLLNTLRIVDSDQYSSLELVCTFFTILGSYSKGFIVIVDPYPE-VSGLYDPVIQLSCL 540
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRG 498
D+S+A++P+ R+QS+V+TSGTLSP+DLYP+LL F PVVS+S M+L R CICP+++TRG
Sbjct: 541 DSSIAMRPILKRYQSIVLTSGTLSPLDLYPKLLGFIPVVSQSLTMTLDRTCICPLIVTRG 600
Query: 499 SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGIL 558
SDQ P+S+KF+ R+D + +NYGKL++E+ VPDG+VCFF SY YM+++++ W +SG+L
Sbjct: 601 SDQTPLSSKFESRADVSIQQNYGKLILEITKKVPDGVVCFFSSYLYMEQMLSQWYESGLL 660
Query: 559 KEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLV 618
+IM+HKLVF+ET+D+V TTLAL +YRKACD GRGA+FFS+ARGKVAEGIDFDRHYGR V
Sbjct: 661 AQIMEHKLVFVETKDIVSTTLALHHYRKACDIGRGAIFFSIARGKVAEGIDFDRHYGRCV 720
Query: 619 IMFGVPFQYTLSK 631
+M G+P+QYTLSK
Sbjct: 721 VMVGIPYQYTLSK 733
>gi|396473579|ref|XP_003839371.1| similar to TFIIH basal transcription factor complex helicase
subunit [Leptosphaeria maculans JN3]
gi|312215940|emb|CBX95892.1| similar to TFIIH basal transcription factor complex helicase
subunit [Leptosphaeria maculans JN3]
Length = 792
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/631 (49%), Positives = 441/631 (69%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++ + V FPY +YPEQY+YM +LKR LD GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDTLPVLFPYPRVYPEQYAYMCDLKRTLDQGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE KLIYC+RT+ E+EK LAELK L Y+T+ LG + +GL+SRKNLC++
Sbjct: 61 QHYPEKR-KLIYCSRTMSEIEKALAELKALMKYRTQELGYEEEFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ ++E C + +N + ++PPGV+T +
Sbjct: 120 VKREKSGSIVDARCRSLTAGFVKEKKERGEDVELCVYHDNLDLLEPHNLIPPGVWTFDGM 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+QQ CPYF AR M+ + NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNID
Sbjct: 180 LKYGEQQKQCPYFTARRMMPYCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + L AT+ ++ ++++I K+TDA +L+ EY +LV+GL
Sbjct: 240 NVCIESLSIDLTEDVLRKATKGVNNLDRKITEMKSTDAEKLQNEYAKLVDGLRSADEARS 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+A+++NP LP D+L EAVPGNIRRAEHF+ L+R ++YL+ R++ NV + P +F++
Sbjct: 300 EEAFMANPVLPDDLLTEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLNVVSDTPPAFLSH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+T +++ +Q + FATLV TY GF IIIEP
Sbjct: 360 LRDLTYIERKPLRFCAERLTSLVRTLELTSIEDYQPLQEVATFATLVATYETGFLIIIEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L L+C DA++A+KPVF+RF SV++TSGT+SP+D+YPR+LNF+ VV S
Sbjct: 420 FESATATVPNPILHLTCLDAAIAIKPVFERFYSVIVTSGTMSPLDMYPRMLNFNTVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+LTR PM++ RG+DQ ++++F+ R+D V RN+G LL+E + PDG+V FF
Sbjct: 480 FTMTLTRKSFLPMIVDRGNDQNQITSQFEHRNDLQVQRNFGNLLIEFCKLTPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W IL + ++KL+ +ET D ET LAL+ +R AC+ GRGAV VA
Sbjct: 540 SYLYMESIISAWQGMEILDTVWKYKLILVETPDAQETALALETFRTACNNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVP+QYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRTVLCMGVPYQYTESR 630
>gi|146415208|ref|XP_001483574.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 843
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/642 (48%), Positives = 441/642 (68%), Gaps = 12/642 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+C+LEMP+GTGKTI+LLSL +Y
Sbjct: 54 MKFFIDDLPVLFPYPRIYPEQYAYMSDIKKTLDVGGNCILEMPSGTGKTISLLSLTVAYQ 113
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L Y+ LG +GL+SRKNLC++
Sbjct: 114 MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEYRAEELGYVEDFRGLGLTSRKNLCIHPT 172
Query: 121 VLAAENRDSVDAACRKRTASWVRA----------LAAENPNIET-CEFFENYEKAASAAV 169
+ + VD CR+ T ++ L A NP T C + EN S +
Sbjct: 173 ISKERKGNVVDEKCRRITNGQLKQKIELGAVSPDLQANNPEAYTLCNYHENMNDMDSHSY 232
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
+P GVY+ L + K++ CPYF R M+ F N+++YSY YLLDPK+A +SKE+ K+S
Sbjct: 233 VPNGVYSFDGLINYSKEKQICPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKDS 292
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
+++FDEAHNIDNVCIE+LS+ + TL+ ATR +++ + ++ KA D+ +L+ EY +LV
Sbjct: 293 IIIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLGEAVDEMKAQDSEKLQNEYEKLV 352
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
EGL + ++SNPALP D+L EA+PGNIR+AEHF+ L+R ++YL+ R++ +V
Sbjct: 353 EGLRDAEIARDEELFMSNPALPQDLLDEAIPGNIRKAEHFISFLKRFIEYLKTRMKVLHV 412
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
E P+SF+ + I++K LRFC ERL L+ TLE+++ ++F ++ I FATLV T
Sbjct: 413 ISETPLSFLQHLKDLTFIERKPLRFCSERLSLLVRTLELSEIEDFNALKDIATFATLVST 472
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
Y RGF +I+EPF+ +P+P+L +C DAS+A+KPVFDRF SV+ITSGT+SP+D+YPR
Sbjct: 473 YDRGFQLILEPFETDGATVPNPILHFTCLDASIAMKPVFDRFSSVIITSGTISPLDMYPR 532
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
+LNF V+ S+ M+L R PM++T+G+DQ+ +S++F++R+DP V RNYG LL+E
Sbjct: 533 MLNFQTVIQESYTMTLARRSFLPMIVTKGADQVSISSQFEIRNDPSVVRNYGSLLIEFSK 592
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
I PDG+V FF SY YM+ II+ W G+L E+ +HKL+ +ET D T+LAL+ YRKAC
Sbjct: 593 ITPDGMVVFFPSYLYMESIISMWQTMGVLDEVWKHKLILVETPDAQVTSLALETYRKACS 652
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGAV SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 653 NGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 694
>gi|190347854|gb|EDK40205.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 843
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/642 (48%), Positives = 441/642 (68%), Gaps = 12/642 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+C+LEMP+GTGKTI+LLSL +Y
Sbjct: 54 MKFFIDDLPVLFPYPRIYPEQYAYMSDIKKTLDVGGNCILEMPSGTGKTISLLSLTVAYQ 113
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L Y+ LG +GL+SRKNLC++
Sbjct: 114 MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEYRAEELGYVEDFRGLGLTSRKNLCIHPT 172
Query: 121 VLAAENRDSVDAACRKRTASWVRA----------LAAENPNIET-CEFFENYEKAASAAV 169
+ + VD CR+ T ++ L A NP T C + EN S +
Sbjct: 173 ISKERKGNVVDEKCRRITNGQLKQKIESGAVSPDLQANNPEAYTLCNYHENMNDMDSHSY 232
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
+P GVY+ L + K++ CPYF R M+ F N+++YSY YLLDPK+A +SKE+ K+S
Sbjct: 233 VPNGVYSFDGLINYSKEKQICPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKDS 292
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
+++FDEAHNIDNVCIE+LS+ + TL+ ATR +++ + ++ KA D+ +L+ EY +LV
Sbjct: 293 IIIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLGEAVDEMKAQDSEKLQNEYEKLV 352
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
EGL + ++SNPALP D+L EA+PGNIR+AEHF+ L+R ++YL+ R++ +V
Sbjct: 353 EGLRDAEIARDEELFMSNPALPQDLLDEAIPGNIRKAEHFISFLKRFIEYLKTRMKVLHV 412
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
E P+SF+ + I++K LRFC ERL L+ TLE+++ ++F ++ I FATLV T
Sbjct: 413 ISETPLSFLQHLKDLTFIERKPLRFCSERLSLLVRTLELSEIEDFNALKDIATFATLVST 472
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
Y RGF +I+EPF+ +P+P+L +C DAS+A+KPVFDRF SV+ITSGT+SP+D+YPR
Sbjct: 473 YDRGFQLILEPFETDGATVPNPILHFTCLDASIAMKPVFDRFSSVIITSGTISPLDMYPR 532
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
+LNF V+ S+ M+L R PM++T+G+DQ+ +S++F++R+DP V RNYG LL+E
Sbjct: 533 MLNFQTVIQESYTMTLARRSFLPMIVTKGADQVSISSQFEIRNDPSVVRNYGSLLIEFSK 592
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
I PDG+V FF SY YM+ II+ W G+L E+ +HKL+ +ET D T+LAL+ YRKAC
Sbjct: 593 ITPDGMVVFFPSYLYMESIISMWQTMGVLDEVWKHKLILVETPDAQVTSLALETYRKACS 652
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGAV SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 653 NGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 694
>gi|453084907|gb|EMF12951.1| DNA repair helicase RAD3 [Mycosphaerella populorum SO2202]
Length = 806
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/631 (49%), Positives = 433/631 (68%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F + D+ V FPY IYPEQY+YM +LK LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIGDLPVLFPYPRIYPEQYAYMCDLKHTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L Y+ LG +GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALAELKALMKYRADQLGVVEDFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ +++ C + +N + ++PPGV+TL +
Sbjct: 120 VKREKSGSVVDARCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVWTLDGM 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++Q CPYF AR M+ F NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 LRYGEEQKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A R ++++I+ K TDA +L+ EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKAARGAENLDRKIKEMKDTDAEKLQNEYAKLVEGLREADTARD 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
A++SNPALP D+LKEAVPGNIRRAEHF L+R ++YL+ R++ +V E P SF+
Sbjct: 300 EGAFMSNPALPDDLLKEAVPGNIRRAEHFTAFLKRFIEYLKTRMKVLHVISETPPSFLQH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATL TY GF +I+EP
Sbjct: 360 LKELTFIEKKPLRFCAERLTSLVRTLELTNIEDYQPLQEVATFATLAATYDTGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ +P+PVL +C DA++A+KPVF+RF SV+ITSGT+SP+++YP++L F VV S
Sbjct: 420 YESDTATVPNPVLHFTCLDAAIAIKPVFERFSSVIITSGTISPLEMYPKMLGFSAVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F RSDP RNYG L++E + PDGIV FF
Sbjct: 480 YAMTLARRSFLPMIVTRGSDQNQISSGFQTRSDPANIRNYGNLIIEFSKLTPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +I+ W GIL ++ + KL+ +ET D ET+LAL+ YR AC GRGAV VA
Sbjct: 540 SYLYMESVISMWQSMGILDQVWKSKLILVETPDSQETSLALETYRTACSNGRGAVLLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 600 RGKVSEGIDFDHHYGRTVLCIGVPFQYTESR 630
>gi|367035588|ref|XP_003667076.1| hypothetical protein MYCTH_104059 [Myceliophthora thermophila ATCC
42464]
gi|347014349|gb|AEO61831.1| hypothetical protein MYCTH_104059 [Myceliophthora thermophila ATCC
42464]
Length = 799
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/631 (49%), Positives = 434/631 (68%), Gaps = 3/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYP +YM++LK+ LDA G+C+LEMP+GTGKT+ LLSLI +Y
Sbjct: 1 MEFNIDDLPVLFPYPRIYPG--NYMVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 58
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
P + KLIYC+RT+ E+EK L ELK L ++ LG + +GL+SRKNLC++
Sbjct: 59 QYYPSHR-KLIYCSRTMSEIEKALVELKALMKFRAERLGYEEEFRGLGLTSRKNLCLHPS 117
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ + VDA CR TA +++ + ++E C + +N + ++P GV+T +
Sbjct: 118 VKREKSGNVVDARCRSLTAGFIKEKKEKGEDVEVCVYHDNLDLLEPHNLIPNGVWTFDGI 177
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+Q+ NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 178 LRYGEQHKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 237
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALS + +L ATR + +I + +D +L+ EY +LVEGL +
Sbjct: 238 NVCIEALSTDITDDSLRKATRGAQNLENKINEMRESDQQKLQDEYEKLVEGLKGADDGRQ 297
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D++++NP LP D+LKEAVPGNIRRAEHF+ LRR ++YL+ R++ V E P SF+A
Sbjct: 298 EDSFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLAH 357
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ H I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY +GF +I+EP
Sbjct: 358 LKEHTFIEKKPLRFCAERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEP 417
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL +C DA++A+KPVFDRF SVVITSGTLSP+++YP++LNF VV S
Sbjct: 418 FESDTAEVPNPVLHFTCLDAAIAIKPVFDRFSSVVITSGTLSPLEMYPKMLNFPTVVQES 477
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +ST F +R++P V RNYG LL E I PDG+V FF
Sbjct: 478 YSMTLARRSFLPMIVTRGSDQASISTSFQVRNEPSVVRNYGNLLTEFAKITPDGMVVFFP 537
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL E+ ++KL+ +ET D ET+LAL+ YR AC GRGAV VA
Sbjct: 538 SYLYMESIISMWQGMGILDEVWKYKLILVETPDAQETSLALETYRTACCNGRGAVLLCVA 597
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 598 RGKVSEGIDFDHQYGRTVLCIGVPFQYTESR 628
>gi|50293749|ref|XP_449286.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528599|emb|CAG62260.1| unnamed protein product [Candida glabrata]
Length = 775
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/634 (48%), Positives = 440/634 (69%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM ++KR LDA G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFFIDDLPVLFPYPKIYPEQYQYMRDIKRTLDAGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L +Y+ + LG + +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKALVELENLMDYRAKELGFKEEFRGLGLTSRKNLCLHPE 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENP--NIETCEFFENYEKAASAAVLPPGVYTLQ 178
V + VD CR+ T + E+P N+E C++ EN + LP GV++ +
Sbjct: 120 VSKERSGTIVDEKCRRMTNGQAKKKLEEDPEANVELCDYHENLYQLDVENYLPNGVFSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + +Q+ CPYF+ R M+ N+++YSY YLLDPK+A +S E+ K+S+V+FDEAHN
Sbjct: 180 KLIKYCEQKVLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSHEVSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L AT+ + +N+ I + DA +L+ EY +LV+GL +
Sbjct: 240 IDNVCIESLSLDLTNDVLRKATKGANTLNERIAEARQVDARKLQDEYEKLVQGLHAEDIM 299
Query: 299 P-IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
+ ++ P LP D+LKEA+PGNIRRAEHF+ L+RL++YL+ R++ +V E P SF
Sbjct: 300 TQTEEPFVETPVLPQDLLKEAIPGNIRRAEHFISFLKRLIEYLKTRMKVLHVISETPRSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + ID+K LRFC ERL L+ TLEI D +EF ++ I FATLV TY GF++I
Sbjct: 360 LQHLKQLTFIDRKPLRFCSERLSLLVRTLEIEDVEEFAALKDIATFATLVSTYEDGFTLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+++ +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YPR+LNF V+
Sbjct: 420 IEPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFETVL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ MSL + PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V
Sbjct: 480 QKSYSMSLAKKSFLPMIVTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ I++ W GIL E+ +HKL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILL 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD YGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESR 633
>gi|426243940|ref|XP_004015798.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Ovis aries]
Length = 759
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/629 (50%), Positives = 427/629 (67%), Gaps = 41/629 (6%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y +
Sbjct: 43 LNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRA 102
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++ V
Sbjct: 103 YPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVT 162
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL+A
Sbjct: 163 PLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDLKA 222
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNV
Sbjct: 223 VGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNV 282
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
CI+++SV++ R+TL+ NL + + + R+K TD RLR EY RLVEGL D
Sbjct: 283 CIDSMSVNLTRRTLDRCQANLETLQKTVLRYKETDEQRLREEYRRLVEGLREASAARETD 342
Query: 303 AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASIT 362
A L+NP LP ++LK GP+ I
Sbjct: 343 AHLANPVLPDEVLK------------------------------------GPL-----IA 361
Query: 363 AHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFD 422
+ LRFC ERL SL+ TLEI+D +F + + +FATLV TY +GF+IIIEPFD
Sbjct: 362 PQPLGRSQPLRFCAERLRSLLHTLEISDLTDFSPLTLLANFATLVSTYAKGFTIIIEPFD 421
Query: 423 ERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFK 482
+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F
Sbjct: 422 DRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFT 481
Query: 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSY 542
M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY
Sbjct: 482 MTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSY 541
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARG 602
YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARG
Sbjct: 542 QYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARG 601
Query: 603 KVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
KV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 602 KVSEGIDFVHHYGRAVIMFGVPYVYTQSR 630
>gi|389638466|ref|XP_003716866.1| DNA repair helicase rad15 [Magnaporthe oryzae 70-15]
gi|351642685|gb|EHA50547.1| DNA repair helicase rad15 [Magnaporthe oryzae 70-15]
Length = 795
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/630 (49%), Positives = 433/630 (68%), Gaps = 1/630 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M+F ++D+ V FPY IYPEQY+YM +LK+ LD G+C+LEMP+GTGKT LLSLI +Y
Sbjct: 1 MLFYIDDLPVIFPYPRIYPEQYAYMCDLKKTLDVGGNCVLEMPSGTGKTATLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L Y+ LG +GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALAELKNLMKYRAGELGKEEDFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ + ++E C + +N + ++P GV+TL+ L
Sbjct: 120 VKREKSGAIVDARCRGLTAGFVKEKKEKGEDVELCVYHDNLDLLEPHNLIPNGVWTLEGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF +R M+Q+ NV++YSY YLLDPK+A +SKE+ ++S++VFDEAHNID
Sbjct: 180 LRYGEEHKQCPYFTSRRMMQYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS + +L A+R + + I + TD +L EY +LVEGL
Sbjct: 240 NVCIESLSTDITEDSLRKASRGAMNLEKRINEMRETDQNQLEDEYRKLVEGLREADEARQ 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ V E P SF+A
Sbjct: 300 EDAFMSNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLEVISETPPSFLAH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + I++K LRFC ERL SL+ TLE+T+ ++F +Q + FATLV TY +GF +++EP
Sbjct: 360 LKEYTFIEKKPLRFCAERLTSLVRTLELTNIEDFQPLQEVATFATLVATYDKGFLLLLEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ IP+PVL +C DA++A+KPVF+RF++V+ITSGTLSP+++YP++L F VV S
Sbjct: 420 YESEKSQIPNPVLHFTCLDAAIAIKPVFERFKTVIITSGTLSPLEMYPKMLGFDAVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++T+GSDQ +S+ F +R+DP V RNYG+LL E I PDG+V FF
Sbjct: 480 YAMTLARRSFLPMIVTKGSDQASISSSFAVRNDPAVVRNYGQLLTEFAKITPDGMVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W IL EI ++KL+ +ET D ET +AL+ YR AC G GA+ VA
Sbjct: 540 SYFYMESIISMWQGMKILDEIWKYKLILVETPDAQETAVALETYRTACCNGTGAIMLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
RGKV+EGIDFD YGR V+ GVPFQYT S
Sbjct: 600 RGKVSEGIDFDHQYGRTVLCIGVPFQYTES 629
>gi|410076214|ref|XP_003955689.1| hypothetical protein KAFR_0B02570 [Kazachstania africana CBS 2517]
gi|372462272|emb|CCF56554.1| hypothetical protein KAFR_0B02570 [Kazachstania africana CBS 2517]
Length = 779
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/635 (48%), Positives = 442/635 (69%), Gaps = 5/635 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM ++K+ LDA G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFFIDDLPVLFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLSVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EKTL EL+ L +Y++R LG + +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKTLVELENLMDYRSRELGYVEEFRGLGLTSRKNLCLHPV 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNI---ETCEFFENYEKAASAAVLPPGVYTL 177
V VD CR+ T + ENP+ E CE+ EN LP GV++
Sbjct: 120 VSKERKGTVVDEKCRRLTNGVNKRKLQENPDATDAELCEYHENLYDMEVENYLPKGVFSF 179
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+ L + +++ CPYF+ R M+ N++VYSY YLLDPK+A +S E+ K+S+V+FDEAH
Sbjct: 180 EKLIKYAEEKTICPYFIVRRMISLCNIIVYSYHYLLDPKIAERVSNEVSKDSIVIFDEAH 239
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGN 297
NIDNVCIE+LS+ + L AT+ + + IE + D+ +L+ EY++LV+GL
Sbjct: 240 NIDNVCIESLSLDLTNDVLRRATKGANALEGRIEEVRKADSKKLQDEYDKLVQGLHADDI 299
Query: 298 LPIADA-WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVS 356
L +A+ ++ P L D+LKEA+PGNIRRAEHF+ L+RL++YL+ R++ +V E P S
Sbjct: 300 LTVAEEPFVETPVLSQDLLKEAIPGNIRRAEHFISFLKRLIEYLKTRMKVLHVISETPKS 359
Query: 357 FVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSI 416
F+ + ID+K LRFC ERL L+ TLE+T+ ++F ++ I FATL+ TY GF++
Sbjct: 360 FLQHLKQLTFIDRKPLRFCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEDGFTL 419
Query: 417 IIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPV 476
IIEP++ +P+P+++ SC DAS+A+KPVF++F SV+ITSGT+SP+D+YPR+LNF +
Sbjct: 420 IIEPYEIENAAVPNPIMRFSCLDASIAIKPVFEKFSSVIITSGTISPLDMYPRMLNFETI 479
Query: 477 VSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIV 536
+ +S+ M+L + PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V
Sbjct: 480 LQKSYSMTLDKKSFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMV 539
Query: 537 CFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVF 596
FF SY YM+ I++ W GIL E+ +HKL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 VFFPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAIL 599
Query: 597 FSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 LSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 634
>gi|171690222|ref|XP_001910036.1| hypothetical protein [Podospora anserina S mat+]
gi|170945059|emb|CAP71170.1| unnamed protein product [Podospora anserina S mat+]
Length = 802
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/631 (49%), Positives = 433/631 (68%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM++LK+ LDA G+C+LEMP+GTGKT+ LLSLI +Y
Sbjct: 1 MEFFIDDLRVLFPYPRIYPEQYAYMVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+S E LIYC+RT+ E+EK L ELK L ++ LG A+GL+SRKNLC++
Sbjct: 61 MSSQEKR-PLIYCSRTMSEIEKALVELKALMKFRAERLGHEEDFRAMGLTSRKNLCLHPD 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +++ + +++ C + +N + ++P GV++L L
Sbjct: 120 VKREKSGSVVDARCRSLTAGFIQEKKRKGEDVDVCVYHDNLDNLEPHNLIPNGVWSLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF AR M+ NVV+YSY YLLDPK+A +SK+ K+ +VVFDEAHNID
Sbjct: 180 LRYGQKHTQCPYFTARRMMSQCNVVIYSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS + ++L ATR + I + +D +L+ EY +LVEGL
Sbjct: 240 NVCIESLSTDITEESLRRATRGAQFLENRINEMRDSDQQKLQDEYEKLVEGLRGDDETRE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D++++NP LP D+LKEAVPGNIRRAEHF+ LRR ++YL+ R++ V E P SF+A
Sbjct: 300 EDSFMANPTLPEDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLAH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + I++K LRFC ERL SL+ TLE+T +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 LKEYTFIEKKPLRFCAERLTSLVRTLELTRIEDYQPLQEVATFATLVATYEKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ +P+PVL +C DA++A+KPVFDRF SV+ITSGT+SP+++YP++LNF VV S
Sbjct: 420 YESDTAEVPNPVLHFTCLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFETVVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +ST F +R++P V RNYG LLVE I PDGIV F
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQATISTGFQVRNEPSVVRNYGSLLVEFAKITPDGIVLFTP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ +I+ W G+L E+ ++KL+ +ET D ET LAL+ YR AC GRGAVF VA
Sbjct: 540 SYLYLESLISMWQGMGVLDEVWKYKLILVETPDAQETALALETYRTACKNGRGAVFLCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DFD+ +GR VI GVPFQYT S+
Sbjct: 600 RGKVSEGVDFDKEFGRTVINIGVPFQYTESR 630
>gi|320583366|gb|EFW97581.1| DNA repair helicase RAD3 [Ogataea parapolymorpha DL-1]
Length = 1061
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/634 (49%), Positives = 441/634 (69%), Gaps = 8/634 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
F ++D+ V FPY IYPEQY+YM ++KR LD G+C+LEMP+GTGKTI+LLSL +Y +
Sbjct: 299 FFIDDLPVLFPYPKIYPEQYAYMCDIKRTLDVGGNCILEMPSGTGKTISLLSLTVAYQMH 358
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
PE+ K++YC+RT+ E+EK L EL L Y+++ LG +GL+SRKNLC++ +
Sbjct: 359 YPEHR-KIVYCSRTMSEIEKALIELHKLMEYRSKELGFVEDFRGLGLTSRKNLCLHP--V 415
Query: 123 AAENRDSV--DAACRKRTASWVRAL--AAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
A+ R V D CR+ T ++A + + C F E + A ++PPGVY+ +
Sbjct: 416 ASRERKGVVVDEMCRRMTNGQLKARIEQGQASTDQLCSFHEKLYEKDPANLVPPGVYSFE 475
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + K +G CPYF R M+ F N+++YSY YLLDPK+A +SKE+ ++S+++FDEAHN
Sbjct: 476 QLMKYCKMEGTCPYFTIRRMMPFCNIIIYSYHYLLDPKIAERVSKELSRDSIIIFDEAHN 535
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L A++ + + +++E K TD+ RL+ EY +LVEGL
Sbjct: 536 IDNVCIESLSLDLTEDVLRRASKGANALARKVEEVKKTDSKRLQDEYEKLVEGLRESEIY 595
Query: 299 PI-ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
DA++ NP LP D+L EAVPG+IRRAEHF+ L+R ++YL+ R++ +V E PVSF
Sbjct: 596 HTDEDAFMVNPVLPDDVLTEAVPGSIRRAEHFISFLKRFIEYLKTRMKVLHVISETPVSF 655
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + ID+K LRFC ERL L+ TLE+ + +EF+ ++ I F TLV TY GF +I
Sbjct: 656 LQHLKQLTFIDRKPLRFCSERLSLLVRTLEVVEIEEFMALKDIATFGTLVSTYDTGFVLI 715
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
+EP++ +P+P+L+ +C DAS+A+KP+F+RF SV+ITSGT+SP+D+YPR+LNF VV
Sbjct: 716 LEPYETENATVPNPILRFACLDASIAMKPIFERFSSVIITSGTISPLDMYPRMLNFETVV 775
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
S+ M+L R PMV+T+GSDQ+ +S++F++R+DP V RNYG LL+E I PDG+V
Sbjct: 776 QESYTMTLDRRSFLPMVVTKGSDQVAISSRFEIRNDPSVVRNYGTLLIEFSKITPDGMVV 835
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ II+ W GIL E+ ++KL+ +ET D ET+LAL+ YRKAC GRGAV
Sbjct: 836 FFPSYLYMESIISQWQTMGILDEVWKYKLILVETPDAQETSLALETYRKACSNGRGAVLL 895
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 896 SVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 929
>gi|385302835|gb|EIF46944.1| dna repair helicase rad3 [Dekkera bruxellensis AWRI1499]
Length = 803
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/634 (49%), Positives = 443/634 (69%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPY IYPEQY+YM ++K+ +D G+ +LEMP+GTGKTIALL+L +Y
Sbjct: 1 MKFFIDDLPILFPYPKIYPEQYAYMCDVKKCIDVGGNGVLEMPSGTGKTIALLALSVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L +Y+ + LG +GL+SRKNLC++
Sbjct: 61 MYYPEHR-KIIYCSRTMSEIEKALIELEXLMDYRAKELGHVENFRGLGLTSRKNLCLHPV 119
Query: 121 VLAAENRDSVDAACRKRTASWV--RALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
V + VD CR+ T + + A E E C + E + A ++PPGVY+ Q
Sbjct: 120 VGKEKKGTVVDEMCRRLTNGQLGEKVRAGEANADELCSWHEKLYEKDPANLIPPGVYSFQ 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + KQ+G CPYF R M+ N+V+YSY Y++DPKVA +SK++ K+S+V+FDEAHN
Sbjct: 180 QLLDYCKQEGTCPYFTVRRMMPLCNIVIYSYHYIIDPKVAVRVSKDLSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIEALS+ + L+ ATR + +++++++ K D+ RL+ EY +LV GL L
Sbjct: 240 IDNVCIEALSMDIDEDMLQRATRGANDLSRKVDQVKKVDSSRLQDEYEKLVAGLRESDML 299
Query: 299 PIADA-WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
++ ++ NP LPSD+L+EA+PG+IRRAEHF+ ++R ++YL+ R++ +V E P SF
Sbjct: 300 KESEEPFMENPILPSDVLQEAIPGSIRRAEHFISFMKRFIEYLKTRMKVLHVISETPTSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + ID+K LRFC ERL L+ TLE+ D +EF ++ I FATLV TY GF +I
Sbjct: 360 LQHLKQLTYIDRKPLRFCSERLSMLVRTLEVXDIEEFTSLKDIATFATLVSTYENGFMLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
+EP++ +P+P+L+ +C DAS+A+KPVFDRF SVVITSGT+SP+D+YPR+LNF VV
Sbjct: 420 LEPYETENATVPNPILRFTCMDASIAIKPVFDRFPSVVITSGTISPLDMYPRMLNFDTVV 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
S+ M+L R P+++T+GSDQ+ +S++F++R+DP V RNYG LL+E V I PDG+V
Sbjct: 480 QESYAMTLDRRAFLPLIVTKGSDQVAISSRFEIRNDPSVVRNYGTLLMEFVKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ II+ W GIL E+ ++KL+ +ET D ET LAL+ YRKAC GRGAV
Sbjct: 540 FFPSYLYMESIISMWQGMGILDEVWKYKLILVETPDAQETALALETYRKACLNGRGAVLL 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD +YGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHYYGRTVLMIGIPFQYTESR 633
>gi|68471265|ref|XP_720409.1| hypothetical protein CaO19.7119 [Candida albicans SC5314]
gi|77022390|ref|XP_888639.1| hypothetical protein CaO19_7119 [Candida albicans SC5314]
gi|46442275|gb|EAL01566.1| hypothetical protein CaO19.7119 [Candida albicans SC5314]
gi|76573452|dbj|BAE44536.1| hypothetical protein [Candida albicans]
Length = 765
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/633 (48%), Positives = 434/633 (68%), Gaps = 3/633 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQYSYM ++K+ LD G+C+LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L ++ LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIET--CEFFENYEKAASAAVLPPGVYTLQ 178
+ VD CR+ T ++ + E C F E ++PPGVY+
Sbjct: 120 ISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNLVPPGVYSFD 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + K++G CPYF R M+ F N+++YSY YLLDPK+A +S+E+ K+S+V+FDEAHN
Sbjct: 180 ALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + +TL+ A+R +++ + IE KA D+ +L+ EY +LVEGL
Sbjct: 240 IDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIA 299
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
+ +++NP LP D+L EA+PGNIR+ EHF+ L+R ++YL+ R++ +V E P SF+
Sbjct: 300 RDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFL 359
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
+ I++K LRFC ERL L+ TLE+T+ D+F ++ I FATLV TY GF +I+
Sbjct: 360 QHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLIL 419
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EP++ +P+P+L +C DAS+A+KPVFDRF SV+ITSGT+SP+D+YP++L F V+
Sbjct: 420 EPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQ 479
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCF 538
S+ M+L R PM++T+GSDQ+ +S++F++R+DP V RNYG LL+E I PDG+V F
Sbjct: 480 ESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVF 539
Query: 539 FVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS 598
F SY YM+ II+ W G+L E+ +HKL+ +ET D ET+LAL+ YRKAC GRGAV S
Sbjct: 540 FPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLS 599
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
VARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 VARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 632
>gi|406605469|emb|CCH43113.1| DNA excision repair protein [Wickerhamomyces ciferrii]
Length = 781
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/633 (47%), Positives = 437/633 (69%), Gaps = 3/633 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPRIYPEQYAYMSDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L Y+ + LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIVYCSRTMSEIEKALIELHNLMTYRAKELGYVEDFRGLGLTSRKNLCLHPT 119
Query: 121 VLAAENRDSVDAACRKRTASWVRAL--AAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
V + VD CR+ T+ + + E N++ CEF EN + ++PPGVY+
Sbjct: 120 VSKEKKGSIVDEKCRRMTSGLAKRKIESGETENVDLCEFHENLYELEPDNLVPPGVYSFD 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + K Q CPYF R M+ F N+++YSY YLLDPK++ +SKE+ K+S+++FDEAHN
Sbjct: 180 SLTNYCKDQKTCPYFTVRRMIPFCNIIIYSYHYLLDPKISERVSKELSKDSIIIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L+ A++ + +++ IE K TD+ +L+ EY +LV GL+ +
Sbjct: 240 IDNVCIESLSLDLNNDVLKKASKGANSLSKRIEEVKKTDSKKLQDEYEKLVSGLSAADII 299
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
+ P L D+LKEA+PGNIRRAEHF+ L+R ++YL+ R++ +V E P SF+
Sbjct: 300 NNEQQMMETPVLSEDLLKEAIPGNIRRAEHFVSFLKRFIEYLKTRMKVLHVISETPTSFL 359
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
+ I++K LRFC ERL L+ TLEITD +++ ++ + FATLV TY +GF++I+
Sbjct: 360 QHVKQLTFIERKPLRFCSERLSLLVRTLEITDVEDYNALKDVATFATLVSTYEQGFALIL 419
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EP++ +P+P+L+ +C DAS+A+KP+F+RF SV+ITSGT+SP+D+YPR+LNF V+
Sbjct: 420 EPYETENATVPNPILRFTCLDASIAIKPIFERFSSVIITSGTISPLDMYPRMLNFETVIQ 479
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCF 538
S+ M+L + P+V+T+GSDQ+ +S++F++R+DP + RNYG LL+E I PDG+V F
Sbjct: 480 ESYSMTLAKRSFLPLVVTKGSDQVAISSRFEIRNDPSIVRNYGSLLIEFSKITPDGMVVF 539
Query: 539 FVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS 598
F SY YM+ II+ W GIL E+ ++KL+ +ET D ET LAL+ YR AC GRGA+ S
Sbjct: 540 FPSYLYMESIISMWQTMGILDEVWKYKLILVETPDAQETALALETYRTACSNGRGAILLS 599
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
VARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 VARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 632
>gi|126140148|ref|XP_001386596.1| DNA helicase component of transcription factor b [Scheffersomyces
stipitis CBS 6054]
gi|126093880|gb|ABN68567.1| DNA helicase component of transcription factor b [Scheffersomyces
stipitis CBS 6054]
Length = 793
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/642 (47%), Positives = 440/642 (68%), Gaps = 12/642 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+C+LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L +++ LG + +GL+SRKNLCV+
Sbjct: 61 MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEFRSTELGYVEEFRGLGLTSRKNLCVHPT 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAEN---PNIET--------CEFFENYEKAASAAV 169
+ + VD CR+ T ++ A+ P+ E C+ EN +
Sbjct: 120 ISQERKGNVVDEKCRRITNGQLKERIAKGLVTPDQEVNHAEANTLCDMHENMNDMDQHNL 179
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
+P GVY+ L + KQ+G CPYF R M+ F N+++YSY YLLDPK+A +SKE+ K+S
Sbjct: 180 IPAGVYSFDALIKYCKQEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKDS 239
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
+++FDEAHNIDNVCIE+LS+ + TL+ ATR +++ ++ KA D+ +L+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLGDAVDEMKAHDSEKLQNEYEKLV 299
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
EGL + ++SNP LP D+L EA+PGNIR+AEHF+ L+R ++YL+ R++ +V
Sbjct: 300 EGLRQAEIARDEELFMSNPTLPQDLLDEAIPGNIRKAEHFISFLKRFIEYLKTRMKVLHV 359
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
E P+SF+ + ID+K LRFC ERL L+ TLE+++ ++F ++ I FATLV T
Sbjct: 360 ISETPISFLQHLKELTFIDRKPLRFCSERLSLLVRTLELSEIEDFHALKDIATFATLVST 419
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
Y GF +I+EPF+ +P+P+L C DAS+A+KPVF+RF SV+ITSGT+SP+D+YP+
Sbjct: 420 YDTGFQLILEPFESEGSTVPNPILHFICLDASIAIKPVFERFSSVIITSGTISPLDMYPK 479
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
++NF V+ S+ M+L R PM++T+GSDQ+ +S++F++R+DP V RNYG LL+E
Sbjct: 480 MMNFQTVIQESYTMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFSK 539
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
I PDG+V FF SY YM+ II+ W G+L E+ ++KL+ +ET D ET+LAL+ YRKAC
Sbjct: 540 ITPDGMVVFFPSYLYMESIISMWQTMGVLDEVWKYKLILVETPDAQETSLALETYRKACS 599
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGAV SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 NGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 641
>gi|367008340|ref|XP_003678670.1| hypothetical protein TDEL_0A01270 [Torulaspora delbrueckii]
gi|359746327|emb|CCE89459.1| hypothetical protein TDEL_0A01270 [Torulaspora delbrueckii]
Length = 775
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/634 (48%), Positives = 440/634 (69%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM ++K+ LDA G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYKYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L PE+ K+IYC+RT+ E+EK L EL+ L +Y++R LG +GL+SRKNLC++
Sbjct: 61 LHYPEHR-KIIYCSRTMSEIEKALVELENLMDYRSRELGVHEDFRGLGLTSRKNLCLHPI 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPN--IETCEFFENYEKAASAAVLPPGVYTLQ 178
V VD CR+ T + +P+ +E CE+ EN LP GVY+ +
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKQKLETDPDSKVELCEYHENLYNIEVEDYLPKGVYSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + +++ CPYF+ R M+ N+++YSY YLLDPK+A +S+EM K+ +V+FDEAHN
Sbjct: 180 RLIKYCEERKLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSREMSKDGIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L+ AT+ + + IE + DA +L+ EY++LV+GL L
Sbjct: 240 IDNVCIESLSLDLTNDVLKRATKGANALENRIEEVRRVDAQKLQDEYDKLVQGLHTAEIL 299
Query: 299 -PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
P ++ L P L D+L EA+PGNIRRAEHF+ L+RL++YL+ R++ +V E P SF
Sbjct: 300 EPEEESALETPVLSQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + ID+K LRFC ERL L+ TLE+++ ++F+ ++ I FATL+ TY GF +I
Sbjct: 360 LQHLKQLTFIDRKPLRFCSERLSLLVRTLEVSEIEDFMALKDIATFATLISTYETGFLLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+++ +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YPR+LNF+ V+
Sbjct: 420 IEPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFNTVL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+L + PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V
Sbjct: 480 QKSYAMTLAKKSFLPMIVTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFSKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ II+ W GIL E+ +HKL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIISMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILL 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 633
>gi|256088634|ref|XP_002580433.1| DNA repair helicase rad3/xp-d [Schistosoma mansoni]
Length = 764
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/608 (50%), Positives = 432/608 (71%), Gaps = 1/608 (0%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M+ELKR +DAKGH +LEMP+GTGKT++LLSLI +Y+ ++P K IYC+RTV E+EK +
Sbjct: 1 MIELKRTIDAKGHGVLEMPSGTGKTVSLLSLIVAYMKARPGIVEKFIYCSRTVPELEKVI 60
Query: 85 AELKLLHNY-QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR 143
ELK+L Y T +L I LSSRKNLC+ V A + +VD+AC + TAS+VR
Sbjct: 61 EELKVLDKYYATETNEKGCGLLGIVLSSRKNLCIQRDVKQAGDGAAVDSACFRLTASFVR 120
Query: 144 ALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFAN 203
+PN+ C+++E ++ LP G+Y + D++ + K+ +CPYFL R+ + +AN
Sbjct: 121 KKHMTDPNVPYCKYYEEFDLHGRDNPLPTGIYNMADIKTYAKKHNYCPYFLTRYAISYAN 180
Query: 204 VVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
+VVYSY YLLDPK+A ++S+E+ K SVVVFDEAHNIDNVCIE++S + R++LE T +L
Sbjct: 181 IVVYSYFYLLDPKIANVVSRELPKNSVVVFDEAHNIDNVCIESMSCLITRRSLEKCTTSL 240
Query: 264 SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNI 323
+ + Q + K ++ RL+ EY RLVEGL D L+NPALP DIL+E++PG++
Sbjct: 241 NLLTQTVNEAKTNNSERLKEEYQRLVEGLRQAKLSKETDLVLANPALPDDILQESIPGSL 300
Query: 324 RRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLM 383
R A+ FL LRR ++Y++ RL +V E PV+F+ +D+K L+FC ERL SL+
Sbjct: 301 RSADSFLSFLRRFLEYVKLRLRIAHVVHETPVAFLRDCLEKVCVDRKPLQFCAERLRSLL 360
Query: 384 LTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLA 443
TLE+ D F + +C+FATLV TYTRGF +IIEPFDER P I +PVL C DASL
Sbjct: 361 HTLELADYANFSSLTLLCNFATLVSTYTRGFCLIIEPFDERTPTIINPVLYFHCMDASLP 420
Query: 444 VKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP 503
++P+ RF SV+ITSGTLSP+++YPR+L+FHPV + SF M+L R+C+ PM++++G+DQ+P
Sbjct: 421 IRPIMSRFTSVIITSGTLSPLEMYPRILDFHPVNTVSFTMTLARNCVLPMIVSKGNDQVP 480
Query: 504 VSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQ 563
++TKF+ R D V RNYG LL ++ ++VPDGIV FF SY Y++ A+W + I+++I +
Sbjct: 481 MTTKFESRQDVAVIRNYGHLLAQLSAVVPDGIVAFFPSYHYLESTFASWYEQHIVEQIQR 540
Query: 564 HKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
+KL+F+ETQD ET+LAL Y +AC+ GRGAV SV RG+V+EGIDFD H GR VIMFGV
Sbjct: 541 NKLLFVETQDAEETSLALAAYHRACENGRGAVLLSVVRGRVSEGIDFDHHLGRCVIMFGV 600
Query: 624 PFQYTLSK 631
P+ YT S+
Sbjct: 601 PYVYTQSR 608
>gi|366990349|ref|XP_003674942.1| hypothetical protein NCAS_0B04860 [Naumovozyma castellii CBS 4309]
gi|342300806|emb|CCC68570.1| hypothetical protein NCAS_0B04860 [Naumovozyma castellii CBS 4309]
Length = 774
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/634 (48%), Positives = 439/634 (69%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM +LK+ LDA G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYHYMCDLKKTLDAGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L +Y+ R LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKALVELENLMDYRARELGHRENFRGLGLTSRKNLCLHPV 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNI--ETCEFFENYEKAASAAVLPPGVYTLQ 178
V VD CR+ T + ++PN E CE+ EN K LP GV++ +
Sbjct: 120 VSKERKGTVVDEKCRRMTNGVAKRKLEQDPNADAELCEYHENLYKMEVGDYLPNGVFSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + +++ CPYF+ R M+ N+++YSY YLLDPK+A +S E+ K+S+V+FDEAHN
Sbjct: 180 KLIKYCEERTICPYFVVRRMISMCNIMIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L AT+ + + + I+ + DA +L+ EY++LVEGL L
Sbjct: 240 IDNVCIESLSLDLTNDVLRRATKGANALEERIDDVRKVDAQKLQDEYDKLVEGLHTADIL 299
Query: 299 PIADA-WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
P+ + ++ P L D+LKEA+PGNIRRAEHF+ L+RL++YL+ R++ +V E P SF
Sbjct: 300 PVQEEPFVETPVLSKDLLKEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + ID+K LRFC ERL L+ TLE+T+ ++F ++ I FATL+ TY GF +I
Sbjct: 360 LQHLKQLTFIDRKPLRFCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEDGFLLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+++ +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YPR+LNF V+
Sbjct: 420 IEPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFETVL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+L + PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V
Sbjct: 480 QKSYAMTLAKKSFLPMIVTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ I++ W GIL E+ +HKL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILL 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD YGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESR 633
>gi|255731468|ref|XP_002550658.1| DNA repair helicase RAD3 [Candida tropicalis MYA-3404]
gi|240131667|gb|EER31226.1| DNA repair helicase RAD3 [Candida tropicalis MYA-3404]
Length = 781
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/642 (47%), Positives = 438/642 (68%), Gaps = 12/642 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+C+LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L Y+ LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEYRANELGEVEDFRGLGLTSRKNLCLHPT 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAE----------NPNIET-CEFFENYEKAASAAV 169
+ VD CR+ T +++ + NP + C + E +
Sbjct: 120 ISKERKGVVVDEKCRRITNGQLKSKIEKGIVTEEDQLLNPETNSLCSYHEKLYDYEPHNL 179
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
+PPGVY+ L + K +G CPYF R M+ F N+++YSY YLLDPK+A +SKE+ K+S
Sbjct: 180 IPPGVYSFDALLRYCKDEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKDS 239
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
+++FDEAHNIDNVCIE+LS+ + TL+ ATR +++ + IE K+ D+ +L+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIESLSLDLTEDTLKRATRGANKLGEAIEEMKSQDSEKLQNEYEQLV 299
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
EGL + +++NP LP D+L EA+PGNIR+ EHF+ L+R V+YL+ R++ +V
Sbjct: 300 EGLRQAEIARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFVEYLKTRMKVLHV 359
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
E P SF+ + I++K LRFC ERL L+ TLE+++ ++F ++ I FATLV T
Sbjct: 360 ISETPTSFLQHLKDLTYIERKPLRFCSERLSLLVRTLELSEVEDFNALKDIATFATLVST 419
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
Y GF +I+EP++ +P+P+L +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YP+
Sbjct: 420 YDTGFQLILEPYETEGSTVPNPILHFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPK 479
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
++NF V+ +S+ M+L R PM++T+GSDQ+ +S++F++R+DP V RNYG LLVE
Sbjct: 480 MMNFQTVIQQSYSMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLVEFAK 539
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
I PDG+V FF SY YM+ II+ W + G+L E+ +HKL+ +ET D ET+LAL+ YRKAC
Sbjct: 540 ITPDGMVVFFPSYLYMESIISMWQNMGVLDEVWKHKLILVETPDAQETSLALETYRKACS 599
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGAV SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 NGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 641
>gi|327351176|gb|EGE80033.1| DNA repair helicase RAD3 [Ajellomyces dermatitidis ATCC 18188]
Length = 773
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/607 (50%), Positives = 426/607 (70%), Gaps = 1/607 (0%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y +PE KLIYC+RT+ E+EK L
Sbjct: 1 MCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQQHRPEQR-KLIYCSRTMSEIEKAL 59
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
AELK L Y+TR LG A +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 60 AELKALMKYRTRQLGYAEDFRGLGLTSRKNLCLHPSVKREKSGAVVDARCRSLTAGFVKE 119
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
++E C + EN + + ++PPGV+TL D+ +G+Q CPYF R M+ F NV
Sbjct: 120 KKERGEDVELCIYHENLDLLEPSNLVPPGVFTLDDIIKYGEQHKQCPYFSIRRMMPFCNV 179
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
++YSY YLLDPK+A +S+E+ K+S+VVFDEAHNIDNVCIE+LS+ + +L A+R +
Sbjct: 180 IIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNIDNVCIESLSIDLTEDSLRKASRGAT 239
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ ++IE K++DA +L+ EY +LVEGL + ++NPALP D+LKEAVPGNIR
Sbjct: 240 NLERKIEEMKSSDAEKLQNEYQKLVEGLREADEARQEEQLMANPALPDDLLKEAVPGNIR 299
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
RAEHF+ L+R ++YL+ R++ + E P+SF+A + I++K LRFC ERL SL+
Sbjct: 300 RAEHFVAFLKRFIEYLKTRMKITHTISETPLSFLAHLKDLTFIERKPLRFCAERLASLVR 359
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLE+ + +++ +Q + FATL TY +GF +I+EPF+ +P+P+L +C DA++A+
Sbjct: 360 TLELMNLEDYQPLQQVAAFATLAATYEKGFLLILEPFESETATVPNPILHFTCLDAAIAI 419
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KPVFDRF SV++TSGTLSP+++YP++L F V+ S+ M+L R PMV+TRGSDQ +
Sbjct: 420 KPVFDRFSSVIVTSGTLSPLEMYPKMLKFTTVLQESYTMTLARRSFLPMVVTRGSDQAQI 479
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+ F +R+DPGV RNYG LL+E I PDGIV FF SY YM+ II+ W GIL + +
Sbjct: 480 SSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDLVWNY 539
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+ +ET D E++LAL+ YR AC GRGAV VARGKV+EGIDFD HYGR VI GVP
Sbjct: 540 KLILVETPDSQESSLALETYRTACCNGRGAVLLCVARGKVSEGIDFDHHYGRAVICIGVP 599
Query: 625 FQYTLSK 631
FQYT S+
Sbjct: 600 FQYTESR 606
>gi|403338080|gb|EJY68268.1| hypothetical protein OXYTRI_11217 [Oxytricha trifallax]
Length = 779
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/665 (48%), Positives = 451/665 (67%), Gaps = 62/665 (9%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M ELK+ LD++GH +LEMPTGTGKT+ LLSLI SY+ +K N KLIYCTRT+ EMEKTL
Sbjct: 1 MKELKKTLDSEGHAILEMPTGTGKTVCLLSLILSYIKAKKPN-FKLIYCTRTIVEMEKTL 59
Query: 85 AELKLL--------------------------HNYQTRHLGPAAKILAIGLSSRKNLCVN 118
ELK + N Q + L + ILA+ LSSR+NLC++
Sbjct: 60 EELKFVLEQREKDFPSDQSHQQQFQNMTLEESKNQQNQDLN--SPILALCLSSRRNLCIH 117
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAE----------------------------NP 150
V ++R+ VD+ CR+ TASWVR A + +
Sbjct: 118 PEVSKDDDRERVDSKCRQLTASWVREDALQQRGGSSVFLNNDTSSKIMTNVIPDIEDLHK 177
Query: 151 NIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQ 210
N++ C F+E + A +P GVYTL+DLRAFGK+ CPYFLARH + AN++VY+Y
Sbjct: 178 NMKLCAFYETFWNRADQFTMPKGVYTLEDLRAFGKKHKMCPYFLARHFLLQANIIVYNYA 237
Query: 211 YLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEI 270
Y+LDPK++ ++SKE+QK+ +VVFDE HNIDN CIEA S+++ R+TLE A+ NL ++ +
Sbjct: 238 YMLDPKISNLVSKELQKDCIVVFDECHNIDNACIEAFSLNISRKTLELASNNLRKLEDMV 297
Query: 271 ERFKATDAGRLRAEYNRLVEGLALRG-NLPIA---DAWLSNPALPSDILKEAVPGNIRRA 326
+ K + RL+ EY RLVEGL L G N I LS+P L D+LKEAVPG+IR+A
Sbjct: 298 KEEKVSSTSRLQDEYKRLVEGLVLGGENKGIQLSEKELLSHPLLAQDVLKEAVPGSIRKA 357
Query: 327 EHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386
EHF++ LRR++ L+ L+T V+ + P+ + + + +DQ++L+F ++RL SLM TL
Sbjct: 358 EHFINFLRRIIVCLKEELKTREVKIQTPLQLIYTFQGNYFLDQRSLKFAHDRLSSLMNTL 417
Query: 387 EITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKP 446
+I DEF I + DFATL+ TY +GFS+IIEP+ + I DP+LQ C DAS+A KP
Sbjct: 418 QIAAVDEFNPINIVADFATLLSTYYKGFSVIIEPYPQD-NLIYDPLLQFYCLDASIATKP 476
Query: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVST 506
VF+RF++V++TSGT+SPI++YP++L+F P R+F + L R+ + P+++T+G DQL +S+
Sbjct: 477 VFNRFRNVIMTSGTISPIEIYPKMLDFQPKTMRAFNIILPRNAVQPLIVTKGVDQLQISS 536
Query: 507 KFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKL 566
KFD R + G RNYG LL+E+ SIVPDGIVCFF SY YM+ II W++ GIL+++ ++KL
Sbjct: 537 KFDERENQGNIRNYGNLLIELSSIVPDGIVCFFTSYKYMEHIIIKWDEMGILQKVRENKL 596
Query: 567 VFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626
++IET+D ET LAL+NY++ACD GRGAVFFS+ARGKV+EG+DF HYGR VIMFG+P+Q
Sbjct: 597 IYIETKDNFETILALENYKQACDNGRGAVFFSIARGKVSEGVDFAGHYGRCVIMFGIPYQ 656
Query: 627 YTLSK 631
TLS+
Sbjct: 657 NTLSR 661
>gi|261200873|ref|XP_002626837.1| DNA repair helicase RAD3 [Ajellomyces dermatitidis SLH14081]
gi|239593909|gb|EEQ76490.1| DNA repair helicase RAD3 [Ajellomyces dermatitidis SLH14081]
Length = 773
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/607 (50%), Positives = 426/607 (70%), Gaps = 1/607 (0%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y +PE KLIYC+RT+ E+EK L
Sbjct: 1 MCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQQHRPEQR-KLIYCSRTMSEIEKAL 59
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
AELK L Y+TR LG A +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 60 AELKALMKYRTRQLGYAEDFRGLGLTSRKNLCLHPSVKREKSGAVVDARCRSLTAGFVKE 119
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
++E C + EN + + ++PPGV+TL D+ +G+Q CPYF R M+ F NV
Sbjct: 120 KKERGEDVELCIYHENLDLLEPSNLVPPGVFTLDDIIKYGEQHKQCPYFSIRRMMPFCNV 179
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
++YSY YLLDPK+A +S+E+ K+S+VVFDEAHNIDNVCIE+LS+ + +L A+R +
Sbjct: 180 IIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNIDNVCIESLSIDLTEDSLRKASRGAT 239
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ ++IE K++DA +L+ EY +LVEGL + ++NPALP D+LKEAVPGNIR
Sbjct: 240 NLERKIEEMKSSDAEKLQNEYQKLVEGLRGADEARQEEQLMANPALPDDLLKEAVPGNIR 299
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
RAEHF+ L+R ++YL+ R++ + E P+SF+A + I++K LRFC ERL SL+
Sbjct: 300 RAEHFVAFLKRFIEYLKTRMKITHTISETPLSFLAHLKDLTFIERKPLRFCAERLASLVR 359
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLE+ + +++ +Q + FATL TY +GF +I+EPF+ +P+P+L +C DA++A+
Sbjct: 360 TLELMNLEDYQPLQQVAAFATLAATYEKGFLLILEPFESETATVPNPILHFTCLDAAIAI 419
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KPVFDRF SV++TSGTLSP+++YP++L F V+ S+ M+L R PMV+TRGSDQ +
Sbjct: 420 KPVFDRFSSVIVTSGTLSPLEMYPKMLKFTTVLQESYTMTLARRSFLPMVVTRGSDQAQI 479
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+ F +R+DPGV RNYG LL+E I PDGIV FF SY YM+ II+ W GIL + +
Sbjct: 480 SSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDLVWNY 539
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+ +ET D E++LAL+ YR AC GRGAV VARGKV+EGIDFD HYGR VI GVP
Sbjct: 540 KLILVETPDSQESSLALETYRTACCNGRGAVLLCVARGKVSEGIDFDHHYGRAVICIGVP 599
Query: 625 FQYTLSK 631
FQYT S+
Sbjct: 600 FQYTESR 606
>gi|193606019|ref|XP_001943653.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Acyrthosiphon pisum]
Length = 756
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/629 (49%), Positives = 439/629 (69%), Gaps = 3/629 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ V FPY+ IYPEQY+YM+ELK+A+DAKGHCLLEMP+GTGKTI +LSLI +Y+
Sbjct: 1 MKFFIDELEVLFPYEYIYPEQYAYMVELKKAIDAKGHCLLEMPSGTGKTITILSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KL+Y TRT+ E+EK EL++L +Y + A +L + LSSRKNLCVN
Sbjct: 61 IKYPAKLGKLLYSTRTLSEIEKAAEELRVLCDYYKSN-KYDANVLGVVLSSRKNLCVNPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
+ N VDA C TA +VRA A+ + CEF+E + +LPP +Y ++DL
Sbjct: 120 IAGEHNGRVVDARCHALTAPFVRARHADGEAVNVCEFYEKLDSLGRDTILPPNIYNIEDL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ G +QG CPYF+AR + ANVV+YSY YLLDPK+AGI+SK+ K ++VVFDEAHNID
Sbjct: 180 KELGVKQGICPYFVARQTLIHANVVIYSYHYLLDPKIAGIVSKDFNKNTIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI++LS + L+ A L++++ E+ K D+ RL+ EY ++V+GL
Sbjct: 240 NVCIDSLSSHITSNNLDKAIEGLNKLDTEVTAMKERDSQRLKEEYRKMVDGLREIYRNRE 299
Query: 301 ADAWLSNPALPSDILK-EAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
A+A L+NP +P +LK +PG+IR AEH++ ++R + YL+ R+ + V +E P+ F+
Sbjct: 300 ANAALANPIVPDQVLKITELPGSIRSAEHYIGFMKRFIMYLKLRMNSTTVVQETPIMFIK 359
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
+ I++K LRFC ERL SL+ TLEI++ +F + T+ FATLV TY +GF IIIE
Sbjct: 360 DVYQKVCINRKPLRFCTERLSSLLRTLEISEITDFSPLITVAQFATLVSTYMKGFMIIIE 419
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
PFDER V+ SC DAS+A+KP+ D F +V+ITSGTLSP+D+YP++LN +PV+
Sbjct: 420 PFDER-SSTDSCVMHFSCLDASIAIKPILDYFNTVLITSGTLSPLDMYPKILNINPVIMT 478
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
S M+L+R C PMV+ RG+DQ+ +++K++ R D VARNYG LL+EMV +VPDG+VCFF
Sbjct: 479 SLTMTLSRQCFLPMVVGRGNDQVALTSKWESREDSSVARNYGHLLLEMVKVVPDGVVCFF 538
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
SY YM ++A W D G++++I+ +KL+FIETQ++V T A+ Y +A + G+GA+ SV
Sbjct: 539 PSYLYMKSVVAAWYDQGLIEKILDYKLIFIETQNIVVTNHAIKCYAEAIERGKGALLLSV 598
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
ARGKV+EG+DFD HYGR VI+ G+P+ YT
Sbjct: 599 ARGKVSEGMDFDHHYGRAVIVLGMPYVYT 627
>gi|452820568|gb|EME27609.1| DNA excision repair protein ERCC-2 [Galdieria sulphuraria]
Length = 751
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/612 (50%), Positives = 434/612 (70%), Gaps = 7/612 (1%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M ELK+ LDA GHC+LEMPTGTGKT+ LLS +Y ++ + KLIYCTRTV E++K L
Sbjct: 1 MKELKKTLDAGGHCILEMPTGTGKTVTLLSFFVAYRAARA-SIGKLIYCTRTVGEIDKVL 59
Query: 85 AELKLLHNYQ---TRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
EL+ + Y+ + +++A+GL++R+NLC+ V +E R+ D+ CR TASW
Sbjct: 60 EELERVLAYRRDCNVDVASENQLVAVGLTTRRNLCLLPAVKDSETREEADSKCRSLTASW 119
Query: 142 VRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
VR + C ++EN ++ +PPGVY++ L AFG++QG CPYF AR +Q+
Sbjct: 120 VREGITSRSSDSLCPYYENLQQKGELFQIPPGVYSMSSLNAFGEEQGICPYFTARRSLQY 179
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
A+++VY+Y YLLDPK++ +IS E++++ VVVFDEAHNID+VCIE +SV +++ T++ +
Sbjct: 180 ASIIVYNYHYLLDPKISRMISTELERDCVVVFDEAHNIDDVCIETMSVHLKKDTIQRCYQ 239
Query: 262 NLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPG 321
NL+ ++ ++ K +A +L EY R++ G DA L+ P LP L+E +PG
Sbjct: 240 NLNHLSGLVQDAKQRNAQQLLEEYQRVLRGTPFLATSE-TDALLAAPVLPDSALQETIPG 298
Query: 322 NIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHS 381
NIR+AEHFL LRR+++Y++ ++ +E +F+ S+ + D K L+F +RL S
Sbjct: 299 NIRKAEHFLRFLRRILEYVQNVMQRNVATQEKTGAFLQSMASLLQSDFKALKFSSDRLQS 358
Query: 382 LMLTLEITDTDEFLHIQTICDFATLVGTYTRG--FSIIIEPFDERMPHIPDPVLQLSCHD 439
L+ TL+IT EF IQT+ DF T++G+Y G F +I EP+DER P IPDP+LQL+C D
Sbjct: 359 LIQTLQITHLLEFQPIQTLADFVTILGSYPTGNAFVVIFEPYDERYPSIPDPLLQLACLD 418
Query: 440 ASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGS 499
ASLA++PVF RF+SV++TSGT+SPI+LY R+L F PV ++S MS R +CPM++TRG+
Sbjct: 419 ASLAMQPVFSRFRSVILTSGTISPIELYSRILMFTPVTAKSLTMSFQRRNVCPMIVTRGA 478
Query: 500 DQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILK 559
DQLPVS+K+D R DP V RNYG L++EM IVPDGIVCFF SY YM+ +I W++ GI+K
Sbjct: 479 DQLPVSSKYDYRHDPSVVRNYGTLVMEMARIVPDGIVCFFTSYIYMETMIQLWHEMGIIK 538
Query: 560 EIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVI 619
+I ++KL+FIET D +E TLAL NYRKACDCGRGA+F VARGKVAEGIDFDRHYGR VI
Sbjct: 539 KISEYKLIFIETPDNLECTLALKNYRKACDCGRGALFMCVARGKVAEGIDFDRHYGRCVI 598
Query: 620 MFGVPFQYTLSK 631
+ GVPFQYT S+
Sbjct: 599 VLGVPFQYTESR 610
>gi|336271859|ref|XP_003350687.1| hypothetical protein SMAC_02358 [Sordaria macrospora k-hell]
Length = 796
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/631 (49%), Positives = 430/631 (68%), Gaps = 11/631 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPE LDA G+C+LEMP+GTGKT+ LLSLI +Y
Sbjct: 1 MEFNIDDLPVLFPYPRIYPE----------TLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 50
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK L EL+ L ++ LG + +GL+SRKNLC++
Sbjct: 51 QYYPEHR-KLIYCSRTMSEIEKALVELRALMKFRAERLGREEEFRGLGLTSRKNLCLHPS 109
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ + N+ETC + +N + ++P G++TL L
Sbjct: 110 VKREKSGTIVDARCRSLTAGFVKEKREKGENVETCIYHDNLDLLEQGNLIPNGIWTLDGL 169
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+++ CPYF AR M+Q+ NV++YSY YLLDPK+A +SK++ K+ +VVFDEAHNID
Sbjct: 170 LRYGEEKKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNID 229
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS + + +L ATR + +I K +D +L++EY +LVEGL
Sbjct: 230 NVCIESLSTDITQDSLMRATRGAQNLEAKIAEMKDSDQEKLQSEYEKLVEGLKGLDEGRQ 289
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA+++NP LP D+LKEAVPGNIRRAEHF+ LRR ++YL+ R++ V E P SF+A
Sbjct: 290 EDAFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLAH 349
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY +GF +I+EP
Sbjct: 350 LKEYTFIEKKPLRFCAERLTSLVRTLELTNIEDYRPLQEVATFATLVATYEKGFLLILEP 409
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ P+PVL +C DA++A+KPVFDRF SV+ITSGT+SP+++YP++LNF VV S
Sbjct: 410 YESDTAKTPNPVLHFTCLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFETVVQES 469
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +ST F +R++P V RNYG LL E + PDG+V FF
Sbjct: 470 YAMTLARRSFLPMIVTRGSDQASISTSFQVRNEPSVVRNYGNLLTEFARMTPDGMVVFFP 529
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL E+ +HKL+ +ET D ET+LAL+ YR AC GRGAV VA
Sbjct: 530 SYLYMESIISMWQGMGILDEVWKHKLILVETPDAQETSLALETYRTACCNGRGAVLLCVA 589
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 590 RGKVSEGIDFDHQYGRTVLCIGVPFQYTESR 620
>gi|254569252|ref|XP_002491736.1| 5' to 3' DNA helicase, involved in nucleotide excision repair and
transcription [Komagataella pastoris GS115]
gi|238031533|emb|CAY69456.1| 5' to 3' DNA helicase, involved in nucleotide excision repair and
transcription [Komagataella pastoris GS115]
gi|328351762|emb|CCA38161.1| DNA excision repair protein ERCC-2 [Komagataella pastoris CBS 7435]
Length = 773
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/634 (48%), Positives = 440/634 (69%), Gaps = 6/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++KR LD G+C+LEMP+GTGKTI+LLSL SY
Sbjct: 1 MKFLIDDLPVIFPYPKIYPEQYAYMCDIKRTLDIGGNCILEMPSGTGKTISLLSLTVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL L +++T+ LG +GL+SRKNLC++
Sbjct: 61 MFYPEHR-KIIYCSRTMSEIEKALIELTKLMDFRTKELGVKENFRGLGLTSRKNLCLHP- 118
Query: 121 VLAAENRD-SVDAACRKRTASWVRALAA--ENPNIETCEFFENYEKAASAAVLPPGVYTL 177
++ E + VD CR+ T + A E + C F E S +P GVY+
Sbjct: 119 -ISQERKGIVVDEKCRRMTNGQLSLQVAKGEADKDQLCSFHEKMNDLDSHEYIPIGVYSF 177
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
++L + K G CPYF R M+ F N+++YSY YLLDPK+A +SKE+ KES+V+FDEAH
Sbjct: 178 EELIKYCKGVGICPYFTVRRMMSFCNIIIYSYHYLLDPKIAQRVSKELSKESIVIFDEAH 237
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGN 297
NIDNVCIE+LS+ + TL+ A+R ++ ++++++ K D+ +L+ EY RLVEGL +
Sbjct: 238 NIDNVCIESLSLDLTNDTLKKASRGVNSLSKKVDEIKRIDSKKLQDEYERLVEGLRATES 297
Query: 298 LPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
+ ++NP LP DIL E++PGNIRR EHF+ L+R ++YL+ R++ +V E P SF
Sbjct: 298 SRNEELIMANPILPDDILTESIPGNIRRGEHFVMFLKRFIEYLKTRMKVLHVISETPASF 357
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + I++K LRFC ERL L+ TLE+T+ +EF+ ++ I FATLV TY GF +I
Sbjct: 358 LQHLKLLTFIERKPLRFCAERLALLVKTLELTEIEEFIALKDIATFATLVSTYETGFQLI 417
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
+EP++ P+P+L +C DAS+A+KP+FDRF SV+ITSGT+SP+D+YP++L F V+
Sbjct: 418 LEPYETENASGPNPILHFTCLDASIAIKPIFDRFSSVIITSGTISPLDMYPKMLKFDTVI 477
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
S+ M+L+R P+++T+GSDQ+ +S++F++R+DP V RNYG LL+E I PDG+V
Sbjct: 478 QESYTMTLSRRSFLPLIVTKGSDQVSISSRFEIRNDPSVVRNYGTLLIEFSKITPDGLVV 537
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ II+ W + GIL E+ ++KL+ +ET D ET+L L+ YRKAC GRGAV
Sbjct: 538 FFPSYLYMESIISMWQNMGILDEVWKYKLILVETPDSQETSLGLETYRKACSNGRGAVLL 597
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD H+GR V+M G+PFQYT S+
Sbjct: 598 SVARGKVSEGIDFDHHFGRTVLMIGIPFQYTESR 631
>gi|238883179|gb|EEQ46817.1| DNA repair helicase RAD3 [Candida albicans WO-1]
Length = 701
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/633 (47%), Positives = 433/633 (68%), Gaps = 3/633 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+C+LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L ++ LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIET--CEFFENYEKAASAAVLPPGVYTLQ 178
+ VD CR+ T ++ + E C F E ++P GVY+
Sbjct: 120 ISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNLVPSGVYSFD 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + K++G CPYF R M+ F N+++YSY YLLDPK+A +S+E+ K+S+V+FDEAHN
Sbjct: 180 ALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + +TL+ A+R +++ + IE KA D+ +L+ EY +LVEGL
Sbjct: 240 IDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIA 299
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
+ +++NP LP D+L EA+PGNIR+ EHF+ L+R ++YL+ R++ +V E P SF+
Sbjct: 300 RDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFL 359
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
+ I++K LRFC ERL L+ TLE+T+ D+F ++ I FATLV TY GF +I+
Sbjct: 360 QHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLIL 419
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EP++ +P+P+L +C DAS+A+KPVFDRF SV+ITSGT+SP+D+YP++L F V+
Sbjct: 420 EPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQ 479
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCF 538
S+ M+L R PM++T+GSDQ+ +S++F++R+DP V RNYG LL+E I PDG+V F
Sbjct: 480 ESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVF 539
Query: 539 FVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS 598
F SY YM+ II+ W G+L E+ +HKL+ +ET D ET+LAL+ YRKAC GRGAV S
Sbjct: 540 FPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLS 599
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
VARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 VARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 632
>gi|354544295|emb|CCE41018.1| hypothetical protein CPAR2_300070 [Candida parapsilosis]
Length = 794
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/642 (47%), Positives = 435/642 (67%), Gaps = 12/642 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+C+LEMP+GTGKTI+LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPRIYPEQYAYMSDIKKTLDVGGNCILEMPSGTGKTISLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L ++ LG +GL+SRKNLC+N
Sbjct: 61 MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEFRASELGYVEDFRGLGLTSRKNLCLNPL 119
Query: 121 VLAAENRDSVDAACRKRTASWVR-----ALAAENPNIET------CEFFENYEKAASAAV 169
+ + + VD CR+ T ++ + E I+ C F E +
Sbjct: 120 ISREKKGNVVDEMCRRVTNGQLKEKIEKGVVTEEDQIQDPAKYSLCSFHEKLYDLDPHDL 179
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
+P GVY+ L + K+ G CPYF AR M+ F N+++YSY YLLDPK+A +S+E+ K+S
Sbjct: 180 IPQGVYSFDALIRYCKEMGTCPYFTARRMIPFCNIIIYSYHYLLDPKIADRVSRELSKDS 239
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
+++FDEAHNIDNVCIE+LS+ + L+ ATR +++ +E KA D+ +L+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIESLSLDLTEDVLKRATRGANKLADAVEDMKAQDSEKLQNEYEQLV 299
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
EGL + ++SNP LP D+L EA+PGNIR+ EHF+ L+R ++YL+ R++ +V
Sbjct: 300 EGLRQAEVEREQEMFMSNPILPQDLLDEAIPGNIRKGEHFVAFLKRFIEYLKTRMKVLHV 359
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
E P SF+ + ID+K L+FC ERL L+ TLE+T+ ++F ++ I FATLV T
Sbjct: 360 ISETPTSFLQHLKELTYIDKKPLKFCSERLSLLVKTLELTEIEDFNALKDIATFATLVST 419
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
Y GF +I+EPF+ +P+P+L +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YP+
Sbjct: 420 YDTGFQLILEPFETEGSTVPNPMLHFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPK 479
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
+LNF V+ S+ M+L R PM++T+GSDQ+ +S++F++R+DP V RNYG LL+E
Sbjct: 480 MLNFQTVIQESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAK 539
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
I PDG+V FF SY YM+ II+ W G+L E+ +HKL+ +ET D ET+LAL+ YRKAC
Sbjct: 540 ITPDGMVVFFPSYLYMESIISMWQTMGVLDEVWKHKLILVETPDAQETSLALETYRKACS 599
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGAV SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 NGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 641
>gi|50306065|ref|XP_452994.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642127|emb|CAH01845.1| KLLA0C17776p [Kluyveromyces lactis]
Length = 778
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/634 (47%), Positives = 441/634 (69%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM ++K+ LDA G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L +Y+++ LG +GL+SRKNLC++ R
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPR 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENP--NIETCEFFENYEKAASAAVLPPGVYTLQ 178
V + VD CR+ T R ENP N+E C++ EN A LPPGV++ +
Sbjct: 120 VSKERKGNVVDEKCRRMTNGQARKKKEENPDANVELCDYHENMYNYDVADYLPPGVFSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L F +++ CPYF R M+ N+++YSY YLLDPK+A +SKE+ K+++V+FDEAHN
Sbjct: 180 RLIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGL-ALRGN 297
IDNVCIE+LS+ + + L+ AT+ + +++++E K D+ +L+ EY +LV GL A
Sbjct: 240 IDNVCIESLSLDLTKDLLKKATKGANALDRKVEEMKKVDSQKLQDEYEKLVHGLRASDIL 299
Query: 298 LPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
P + + P L +DILKEA+PGNIRRA HF+ L+R ++YL+ R++ +V E P SF
Sbjct: 300 EPEEEPLVETPVLSNDILKEAIPGNIRRATHFISFLKRFIEYLKTRMKVLHVISETPNSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + I++K LRFC ERL L+ TLE+ + +EF ++ I FATL+ TY GF +I
Sbjct: 360 LLHLKQLTFIERKPLRFCSERLSLLVRTLEVEEVEEFNALKDIATFATLISTYEDGFLLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+++ +C DAS+A+KP+F+RF SV+ITSGT+SP+D+YP++LNF V+
Sbjct: 420 IEPYEIENAAVPNPIVRFTCLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLNFETVL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+L + PM+LT+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V
Sbjct: 480 QQSYSMTLAKKSFLPMILTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ II+ W GIL E+ ++KL+ +ET D ET LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIISMWQTMGILDEVWKYKLILVETPDAQETALALETYRKACSNGRGAILL 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD YGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESR 633
>gi|294659657|ref|XP_462055.2| DEHA2G12056p [Debaryomyces hansenii CBS767]
gi|199434130|emb|CAG90541.2| DEHA2G12056p [Debaryomyces hansenii CBS767]
Length = 794
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/642 (47%), Positives = 439/642 (68%), Gaps = 13/642 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPY IYPEQY+YM ++K+ LD G+C+LEMP+GTGKTI+LLS+ +Y
Sbjct: 1 MKFYIDDLPILFPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTISLLSITVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L ++ LG + +GLSSRKNLC++
Sbjct: 61 MHYPEHR-KVVYCSRTMSEIEKALIELHNLMKFRAEQLGYVEEFRGLGLSSRKNLCLHPT 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIET-----------CEFFENYEKAASAAV 169
+ VD CR+ T ++ EN I T C F E+ + +
Sbjct: 120 ISKERKGIVVDEKCRRVTNGQLKK-KIENGLINTEQTQDPEANALCSFHESLNEMDQHNL 178
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
+P GVY+ L K+ G CPYF R M+ F N+++YSY YLLDPK+A +SKE+ K+S
Sbjct: 179 IPAGVYSFDALINHCKEVGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIADRVSKEISKDS 238
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
+++FDEAHNIDNVCIE+LS+ + TL+ ATR +++ ++ K+ D+ +L+ EY +LV
Sbjct: 239 IIIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLGDAVDDMKSQDSEKLQNEYEKLV 298
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
EGL + ++SNP LP D+L EA+PGNIR+AEHF+ L+R ++YL+ R++ +V
Sbjct: 299 EGLRQAEIARDEELFMSNPTLPQDLLDEAIPGNIRKAEHFISFLKRFIEYLKTRMKVLHV 358
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
E P+SF+ + ID+K L+FC ERL L+ TLE+++ ++F ++ I FATLV T
Sbjct: 359 ISETPISFLQHLKDLTFIDRKPLKFCSERLSLLVRTLELSEIEDFTALKDIATFATLVST 418
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
Y GF +I+EPF+ +P+P+L +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YP+
Sbjct: 419 YDTGFQLILEPFETEGSTVPNPILHFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPK 478
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
+LNF V+ S+ M+L R PM++T+GSDQ+ +S++F++R+DP V RNYG LL+E
Sbjct: 479 MLNFQTVIQESYTMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAK 538
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
IVPDG+V FF SY YM+ II+ W + G+L E+ ++KL+ +ET D ET+LAL+ YRKAC
Sbjct: 539 IVPDGMVVFFPSYLYMESIISMWQNMGVLDEVWKYKLILVETPDAQETSLALETYRKACS 598
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGA+ SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 599 NGRGAILLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 640
>gi|380492131|emb|CCF34825.1| DNA repair helicase rad15 [Colletotrichum higginsianum]
Length = 775
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/608 (50%), Positives = 421/608 (69%), Gaps = 1/608 (0%)
Query: 24 YMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKT 83
YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y PE+ KLIYC+RT+ E+EK
Sbjct: 7 YMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQHNPEHR-KLIYCSRTMSEIEKA 65
Query: 84 LAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR 143
LAELK L Y+ + LG + +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 66 LAELKALMKYRAQELGEEEEFRGLGLTSRKNLCLHPSVKQEKSGAIVDARCRSLTAGFVK 125
Query: 144 ALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFAN 203
N++ C + +N + ++P GV+T L +G+Q CPYF AR M+QF N
Sbjct: 126 EKKDRGENVDVCVYHDNLDLLEPHNLIPNGVWTFDGLLKYGEQHKQCPYFTARRMMQFCN 185
Query: 204 VVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
V++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNIDNVCIE+LS + +L ATR
Sbjct: 186 VIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNIDNVCIESLSTDITEDSLRKATRGA 245
Query: 264 SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNI 323
+ ++I + TD +L+ EY +LVEGL DA++SNPALP D+LKEAVPGNI
Sbjct: 246 QNLERKIAEMRDTDQEQLQNEYQKLVEGLRGADEARQEDAFMSNPALPDDLLKEAVPGNI 305
Query: 324 RRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLM 383
RRAEHF+ L+R ++YL+ R++ + E P SF+A + + I++K LRFC ERL SL+
Sbjct: 306 RRAEHFVSFLKRFIEYLKTRMKVRHTISETPPSFLAHLREYTFIEKKPLRFCAERLTSLV 365
Query: 384 LTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLA 443
TLE+T+ +++ +Q + FATLV TY +GF +I+EPF+ +P+PVL +C DA++A
Sbjct: 366 RTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPFESETAEVPNPVLHFTCLDAAIA 425
Query: 444 VKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP 503
+KPVFDRF SV+ITSGT+SP+++YP++L F VV S+ M+L R PM++TRGSDQ
Sbjct: 426 IKPVFDRFSSVIITSGTMSPLEMYPKMLGFSTVVQESYSMTLARRSFLPMIVTRGSDQSS 485
Query: 504 VSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQ 563
+ST F +R++P V RNYG LL E I PDG+V FF SY YM+ II+ W IL+E+ +
Sbjct: 486 ISTSFQVRNEPSVVRNYGTLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMNILEEVWK 545
Query: 564 HKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
+KL+ +ET D ET+LAL+ YR AC GRGAV VARGKV+EGIDFD YGR V+ GV
Sbjct: 546 YKLILVETPDAQETSLALETYRTACCNGRGAVLLCVARGKVSEGIDFDHQYGRTVLCIGV 605
Query: 624 PFQYTLSK 631
PFQYT S+
Sbjct: 606 PFQYTESR 613
>gi|190405726|gb|EDV08993.1| DNA repair helicase RAD3 [Saccharomyces cerevisiae RM11-1a]
gi|207345787|gb|EDZ72494.1| YER171Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 780
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/634 (47%), Positives = 437/634 (68%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L +Y+T+ LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPE 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENP--NIETCEFFENYEKAASAAVLPPGVYTLQ 178
V VD CR+ T + E+P N+E CE+ EN LP GV++ +
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + +++ CPYF+ R M+ N+++YSY YLLDPK+A +S E+ K+S+V+FDEAHN
Sbjct: 180 KLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L ATR + +++ I + D+ +L+ EY +LV+GL L
Sbjct: 240 IDNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADIL 299
Query: 299 PIADA-WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
+ ++ P LP D+L EA+PGNIRRAEHF+ L+RL++YL+ R++ +V E P SF
Sbjct: 300 TDQEEPFVETPVLPQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + I++K LRFC ERL L+ TLE+T+ ++F ++ I FATL+ TY GF +I
Sbjct: 360 LQHLKQLTFIERKPLRFCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEEGFLLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+++ +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YPR+LNF V+
Sbjct: 420 IEPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFKTVL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+L + PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V
Sbjct: 480 QKSYAMTLAKKSFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ I++ W GIL E+ +HKL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILL 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD YGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESR 633
>gi|398365073|ref|NP_011098.3| Rad3p [Saccharomyces cerevisiae S288c]
gi|131812|sp|P06839.1|RAD3_YEAST RecName: Full=DNA repair helicase RAD3; AltName: Full=General
transcription and DNA repair factor IIH subunit RAD3;
Short=TFIIH subunit RAD3
gi|4269|emb|CAA26215.1| unnamed protein product [Saccharomyces cerevisiae]
gi|172331|gb|AAA34943.1| RAD3 protein [Saccharomyces cerevisiae]
gi|603412|gb|AAB64698.1| Rad3p: DNA repair helicase component of transcription factor b
[Saccharomyces cerevisiae]
gi|151944888|gb|EDN63147.1| transcription initiation factor TFIIH subunit [Saccharomyces
cerevisiae YJM789]
gi|256271309|gb|EEU06379.1| Rad3p [Saccharomyces cerevisiae JAY291]
gi|259146100|emb|CAY79360.1| Rad3p [Saccharomyces cerevisiae EC1118]
gi|285811805|tpg|DAA07833.1| TPA: Rad3p [Saccharomyces cerevisiae S288c]
gi|323305313|gb|EGA59060.1| Rad3p [Saccharomyces cerevisiae FostersB]
gi|323355348|gb|EGA87173.1| Rad3p [Saccharomyces cerevisiae VL3]
gi|349577832|dbj|GAA23000.1| K7_Rad3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299876|gb|EIW10968.1| Rad3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 778
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/634 (47%), Positives = 437/634 (68%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L +Y+T+ LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPE 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENP--NIETCEFFENYEKAASAAVLPPGVYTLQ 178
V VD CR+ T + E+P N+E CE+ EN LP GV++ +
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + +++ CPYF+ R M+ N+++YSY YLLDPK+A +S E+ K+S+V+FDEAHN
Sbjct: 180 KLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L ATR + +++ I + D+ +L+ EY +LV+GL L
Sbjct: 240 IDNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADIL 299
Query: 299 PIADA-WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
+ ++ P LP D+L EA+PGNIRRAEHF+ L+RL++YL+ R++ +V E P SF
Sbjct: 300 TDQEEPFVETPVLPQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + I++K LRFC ERL L+ TLE+T+ ++F ++ I FATL+ TY GF +I
Sbjct: 360 LQHLKQLTFIERKPLRFCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEEGFLLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+++ +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YPR+LNF V+
Sbjct: 420 IEPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFKTVL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+L + PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V
Sbjct: 480 QKSYAMTLAKKSFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ I++ W GIL E+ +HKL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILL 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD YGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESR 633
>gi|164428066|ref|XP_956536.2| DNA repair helicase RAD3 [Neurospora crassa OR74A]
gi|157071997|gb|EAA27300.2| DNA repair helicase RAD3 [Neurospora crassa OR74A]
Length = 796
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/631 (49%), Positives = 429/631 (67%), Gaps = 11/631 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPE LDA G+C+LEMP+GTGKT+ LLSLI +Y
Sbjct: 1 MEFNIDDLPVLFPYPRIYPE----------TLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 50
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK L EL+ L ++ LG + +GL+SRKNLC++
Sbjct: 51 QYYPEHR-KLIYCSRTMSEIEKALVELRALMKFRAERLGHEEEFRGLGLTSRKNLCLHPS 109
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ + N+ETC + +N + ++P G++TL L
Sbjct: 110 VKREKSGAIVDARCRSLTAGFVKEKREKGENVETCVYHDNLDLLEPHNLIPNGIWTLDGL 169
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+++ CPYF AR M+Q NV++YSY YLLDPK+A +SK++ K+ +VVFDEAHNID
Sbjct: 170 MRYGEEKKQCPYFTARRMMQHCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNID 229
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS + + +L ATR + +I K +D +L++EY +LVEGL
Sbjct: 230 NVCIESLSTDITQDSLMRATRGAQNLEAKISEMKDSDQEKLQSEYEKLVEGLKGLDEGRQ 289
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA+++NP LP D+LKEAVPGNIRRAEHF+ LRR ++YL+ R++ V E P SF+A
Sbjct: 290 EDAFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLAH 349
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY +GF +I+EP
Sbjct: 350 LKEYTFIEKKPLRFCAERLTSLVRTLELTNIEDYRPLQEVATFATLVATYEKGFLLILEP 409
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ P+PVL +C DA++A+KPVFDRF SV+ITSGT+SP+++YP++LNF VV S
Sbjct: 410 YESDTAKTPNPVLHFTCLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFETVVQES 469
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +ST F +R++P V RNYG LL E I PDG+V FF
Sbjct: 470 YAMTLARRSFLPMIVTRGSDQASISTSFQVRNEPSVVRNYGNLLTEFARITPDGMVVFFP 529
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL E+ +HKL+ +ET D ET+LAL+ YR AC GRGA+ VA
Sbjct: 530 SYLYMESIISMWQGMGILDEVWKHKLILVETPDAQETSLALETYRTACCNGRGAILLCVA 589
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 590 RGKVSEGIDFDHQYGRTVLCIGVPFQYTESR 620
>gi|365983344|ref|XP_003668505.1| hypothetical protein NDAI_0B02270 [Naumovozyma dairenensis CBS 421]
gi|343767272|emb|CCD23262.1| hypothetical protein NDAI_0B02270 [Naumovozyma dairenensis CBS 421]
Length = 771
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/634 (47%), Positives = 436/634 (68%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM +LK+ LDA G+ +LEMP+GTGKT++LLSL SY
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYHYMCDLKKTLDAGGNSILEMPSGTGKTVSLLSLTISYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L Y+ + LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKALVELENLMAYRAKELGHVETFRGLGLTSRKNLCLHPV 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNI--ETCEFFENYEKAASAAVLPPGVYTLQ 178
V VD CR+ T + ++PN E CE+ EN K LP GV++ +
Sbjct: 120 VSKERKGSVVDEKCRRMTNGIAKRKLEQDPNADAELCEYHENLYKMEVDEYLPNGVFSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + +++ CPYF+ R M+ N+++YSY YLLDPK+A +S E+ K+S+V+FDEAHN
Sbjct: 180 KLIKYCEERTICPYFVVRRMISMCNIMIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L AT+ + ++I+ + D+ RL+ EY++LVEGL +
Sbjct: 240 IDNVCIESLSLDLTNDVLRRATKGAHALEEKIDDVRKIDSQRLQDEYDKLVEGLHSSDIV 299
Query: 299 P-IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
P + ++ P L D+LKEA+PGNIRRAEHF+ L+RL++YL+ R++ +V E P SF
Sbjct: 300 PEQEEPFVETPVLSKDLLKEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + ID+K LRFC ERL L+ TLE+ D ++F ++ I FATL+ TY GF +I
Sbjct: 360 LQHLKQLTFIDRKPLRFCSERLSLLVRTLEVNDVEDFNSLKDIATFATLISTYEDGFLLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+++ +C DAS+A+KPVF++F SV+ITSGT+SP+D+YPR+LNF V+
Sbjct: 420 IEPYEIENAAVPNPIMRFTCLDASIAIKPVFEKFSSVIITSGTISPLDMYPRMLNFETVL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+L + PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V
Sbjct: 480 QKSYSMTLAKKSFLPMIVTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ I++ W GIL E+ +HKL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILL 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD YGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESR 633
>gi|291414826|ref|XP_002723661.1| PREDICTED: excision repair cross-complementing rodent repair
deficiency, complementation group 2 protein [Oryctolagus
cuniculus]
Length = 713
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/631 (49%), Positives = 424/631 (67%), Gaps = 47/631 (7%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAK
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAK------------------------- 35
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ EL+ L ++ + G L + LSSRKNLC++
Sbjct: 36 ----------------------VIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPE 73
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS++RA ++ + C F+E ++ LP G+Y L DL
Sbjct: 74 VTPLRFGKDVDGKCHSLTASYIRAQYQQDASRPHCRFYEEFDAHGRQVPLPAGIYNLDDL 133
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 134 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 193
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + ++R K TD RLR EY RLVEGL
Sbjct: 194 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVQRIKETDEQRLRDEYRRLVEGLREASVARE 253
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL+++++ RL ++V +E P +F++S
Sbjct: 254 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEFVKWRLRVQHVVQESPPAFLSS 313
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 314 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 373
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +PVL SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 374 FDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 433
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 434 FTMTLARVCLCPMIVGRGNDQVAISSKFESREDMAVIRNYGNLLLEMSAVVPDGIVAFFT 493
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 494 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 553
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 554 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 584
>gi|308477366|ref|XP_003100897.1| hypothetical protein CRE_16215 [Caenorhabditis remanei]
gi|308264471|gb|EFP08424.1| hypothetical protein CRE_16215 [Caenorhabditis remanei]
Length = 789
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/666 (47%), Positives = 453/666 (68%), Gaps = 42/666 (6%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + V FPYD +YPEQ YM E+K+ALDA GH LLEMP+GTGKT++LLSL+ +Y+
Sbjct: 1 MQLDIDGLKVLFPYDYVYPEQVLYMKEVKKALDANGHGLLEMPSGTGKTVSLLSLVLAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG-PAAKILAIGLSSRKNLCVNS 119
+S P+ KL+YC+RT+ E+EK + E+K+L++Y + G P AKI + +S+RKNLC+N
Sbjct: 61 ISYPDRLDKLVYCSRTIPEIEKCVEEMKVLYDYWEKETGQPVAKI-TVAMSARKNLCINE 119
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
+V A ++VD+AC+K TAS VRA EN IE C++FEN+E A++ + GV+ L+D
Sbjct: 120 KVAALRFGNTVDSACQKLTASSVRAKRKENSEIEGCDYFENFE--ANSFPMQNGVWNLED 177
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
LR G+++ CPYF AR+ + A++VVYSY Y+LDPK+A ++SK+ ++SVVVFDEAHNI
Sbjct: 178 LRQLGRERKICPYFTARNAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNI 237
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCIE++SV++ ++ + A + L + + R K+ ++ +L++EY++LVEGL
Sbjct: 238 DNVCIESMSVAISQKNADRALQELQNLEGVVGRMKSANSEKLQSEYDKLVEGLKRAERER 297
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETE------------ 347
D L+NP +P DILKEAVPGNIR+A HFL L+R V+Y+R RL T
Sbjct: 298 ANDERLANPCIPDDILKEAVPGNIRQANHFLLFLKRFVEYVRHRLRTHQLFHVDSPNSKQ 357
Query: 348 ----------------------NVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLT 385
V E P +F+ I I+++ +RFC ERL +L+ T
Sbjct: 358 TNVGLLAIFHWSGSCFCSIYTFQVLIESPAAFMKDIQERMCIERRPMRFCAERLANLVRT 417
Query: 386 LEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVK 445
LEITD + + + TLV TY++GFS+I+EP D ++ LSCHDAS+A++
Sbjct: 418 LEITDNGDVWALSQVTTMCTLVSTYSKGFSVIVEPQDGSQM----AMITLSCHDASIAIR 473
Query: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
PV R QSV+ITSGTLSP+++YP++L+F P V SF M+L R C+ P+V+ RG+DQ+ ++
Sbjct: 474 PVLKRHQSVIITSGTLSPLEMYPKILDFDPAVVASFTMTLARPCLAPLVVARGNDQVAMT 533
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
++F+ R+D V RNYG L++EM S+VPDG+V FF SY YM+ +I W + I+ E+M++K
Sbjct: 534 SRFEQRADVAVIRNYGNLVLEMASLVPDGMVVFFTSYLYMENVIGVWYEQHIIDELMKYK 593
Query: 566 LVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L+FIET D +ET+ AL+ Y +ACD GRGAV FSVARGKV+EGIDF H GR VIM G+P+
Sbjct: 594 LLFIETNDALETSAALEKYVEACDSGRGAVLFSVARGKVSEGIDFSHHLGRCVIMLGIPY 653
Query: 626 QYTLSK 631
YT S+
Sbjct: 654 MYTESR 659
>gi|225681891|gb|EEH20175.1| TFIIH basal transcription factor complex helicase subunit
[Paracoccidioides brasiliensis Pb03]
Length = 773
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/607 (50%), Positives = 422/607 (69%), Gaps = 1/607 (0%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y KPE KLIYC+RT+ E+EK L
Sbjct: 1 MCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQQHKPEQR-KLIYCSRTMSEIEKAL 59
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
AELK L Y+ + LG +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 60 AELKALMKYRAQQLGYTEDFRGLGLTSRKNLCLHPSVKREKSGTIVDARCRSLTAGFVKE 119
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
++E C + EN + + ++PPGV+TL D+ +G+Q CPYF R M+ F NV
Sbjct: 120 KKERGEDVELCIYHENLDLLEPSNLVPPGVFTLDDMIKYGEQHKQCPYFSVRRMMPFCNV 179
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
++YSY YLLDPK+A +S+E+ K+S+VVFDEAHNIDNVCIE+LS+ + +L A+R +
Sbjct: 180 IIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNIDNVCIESLSIDLTEDSLRKASRGAN 239
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + I+ K++DA +L+ EY +LVEGL + ++NPALP D+LKEAVPGNIR
Sbjct: 240 NLERRIDEMKSSDAEKLQNEYQKLVEGLREADEARQEEQLMANPALPDDLLKEAVPGNIR 299
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
RAEHF+ L+R ++YL+ R++ + E P SF+A + I++K LRFC ERL SL+
Sbjct: 300 RAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFLAHLKDLTFIERKPLRFCAERLTSLVR 359
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLE+ + +++ +Q + FATL TY +GF +I+EPF+ +P+P+L +C DA++A+
Sbjct: 360 TLELMNLEDYQPLQQVAAFATLAATYEKGFLLILEPFESDTATVPNPILHFTCLDAAIAI 419
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KPVFDRF SV+ITSGTLSP+++YP++L F V+ S+ M+L R PM++TRGSDQ +
Sbjct: 420 KPVFDRFSSVIITSGTLSPLEMYPKMLGFTTVLQESYSMTLARRSFLPMIVTRGSDQAQI 479
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+ F +R+DPGV RNYG LL+E I PDGIV FF SY YM+ II+ W GIL I +
Sbjct: 480 SSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDSIWNY 539
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+ +ET D E++LAL+ YR AC GRGA+ VARGKV+EGIDFD HYGR VI GVP
Sbjct: 540 KLILVETPDSQESSLALETYRTACCNGRGAILLCVARGKVSEGIDFDHHYGRTVICIGVP 599
Query: 625 FQYTLSK 631
FQYT S+
Sbjct: 600 FQYTESR 606
>gi|430813060|emb|CCJ29560.1| unnamed protein product [Pneumocystis jirovecii]
Length = 774
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/631 (48%), Positives = 435/631 (68%), Gaps = 11/631 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM LK+ LDA GHC+LEMP+GTGKT++LLSLI SY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCHLKKTLDAGGHCVLEMPSGTGKTVSLLSLIISYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
E KL+YC+RT+ E+EK L ELK L ++ + +K A+GL+SRKNLC++
Sbjct: 61 -KVFEQHRKLVYCSRTMSEIEKILVELKNLIEFRKKISEENSKFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
+ + + VDA CR TAS+VR + C ++EN ++P GV+T DL
Sbjct: 120 IKHEKKGNIVDARCRGLTASFVREKKKAGEKVNLCLYYENLNFLDFCDLIPYGVFTFTDL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF+AR M+ F NVVVYSY YLLDPK++ IS+E+ K+ +VVFDEAHNID
Sbjct: 180 IEYGEKNQQCPYFIARRMIPFCNVVVYSYHYLLDPKISEFISRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LSV + +L+ A+ +++ + +I K +A +L+ EY +LVEGL +
Sbjct: 240 NVCIESLSVDITEDSLKRASHSINSLETKIANMKKNNAEKLQMEYRKLVEGLREIEKIKE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +++N L D+LKEA+PGNIR+AEHF+ L+R V+Y++ R++ +V E P+SF+
Sbjct: 300 NDIFITNSILSDDLLKEAIPGNIRKAEHFVAFLKRFVEYMKTRMKVLHVIAETPLSFLQH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I+ K LRFC ERL+SL+ TLE++D +++ ++Q I DFATLV TY +GF II+EP
Sbjct: 360 LKELTYIESKPLRFCAERLNSLIRTLELSDIEDYQYLQEITDFATLVSTYEKGFIIILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PV +C DAS+A+KP+F +F+SV+ITSGT+SP+D+YP++L F+ V+ S
Sbjct: 420 FETDTATVPNPVFHFTCLDASIAIKPIFAKFKSVIITSGTISPLDMYPKILQFNAVIQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ +SL R+ PM++TRGS+Q+ +S+KF++R DP V RNYG +L+E I PDG+V FF
Sbjct: 480 YNISLARNSFLPMIITRGSNQVAISSKFEVRDDPSVVRNYGDILLEFSKITPDGLVAFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ I W ++KL+ +ET D ET LAL YR ACD GRGA+ VA
Sbjct: 540 SYIYMESINEIW----------KYKLILVETPDSQETVLALKTYRTACDNGRGAILLCVA 589
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGK++EGIDFD HYGR VIMFG+P+QYT S+
Sbjct: 590 RGKISEGIDFDHHYGRTVIMFGIPYQYTKSR 620
>gi|365760988|gb|EHN02666.1| Rad3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 775
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/634 (47%), Positives = 436/634 (68%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM ++KR LD G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYKYMCDIKRTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L +Y+T+ LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPE 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENP--NIETCEFFENYEKAASAAVLPPGVYTLQ 178
V VD CR+ T + E+P N+E CE+ EN LP GV++ +
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYDIEVEDYLPKGVFSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + +++ CPYF+ R M+ N+++YSY YLLDPK+A +S E+ K+S+V+FDEAHN
Sbjct: 180 KLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L ATR + +++ I + D+ +L+ EY +LV+GL L
Sbjct: 240 IDNVCIESLSLDLTTDALRRATRGANALDERITEVRKVDSQKLQDEYEKLVQGLHSADIL 299
Query: 299 PIADA-WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
+ ++ P LP D+LKEA+PGNIRRAEHF+ L+RL++YL+ R++ +V E P SF
Sbjct: 300 TDQEEPFVETPVLPLDLLKEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + I++K LRFC ERL L+ TLE+ + ++F ++ I FATL+ TY GF +I
Sbjct: 360 LQHLKQLTFIERKPLRFCSERLSLLVRTLEVAEVEDFNALKDIATFATLISTYEEGFLLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+++ +C DAS+A+KPVF++F SV+ITSGT+SP+D+YPR+LNF V+
Sbjct: 420 IEPYEIENAAVPNPIMRFTCLDASIAIKPVFEKFSSVIITSGTISPLDMYPRMLNFKTVL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+L + PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V
Sbjct: 480 QKSYAMTLAKKSFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ I++ W GIL E+ +HKL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILL 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD YGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESR 633
>gi|401625969|gb|EJS43941.1| rad3p [Saccharomyces arboricola H-6]
Length = 777
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/634 (47%), Positives = 435/634 (68%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++KR LD G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYNYMCDIKRTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L +Y+T+ LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPE 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAE--NPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
V VD CR+ T + E N N+E CE+ EN LP GV++ +
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDSNANVELCEYHENLYNIEVEDYLPKGVFSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + +++ CPYF+ R M+ N+++YSY YLLDPK+A +S E+ K+S+V+FDEAHN
Sbjct: 180 KLLRYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L ATR + +++ I + D+ +L+ EY +LV+GL L
Sbjct: 240 IDNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADIL 299
Query: 299 -PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
+ ++ P LP D+L EA+PGNIRRAEHF+ L+RL++YL+ R++ +V E P SF
Sbjct: 300 TEQEEPFVETPVLPQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + I++K LRFC ERL L+ TLE+ + ++F ++ I FATL+ TY GF +I
Sbjct: 360 LQHLKQLTFIERKPLRFCSERLSLLVRTLEVAEVEDFTALKDIATFATLISTYEEGFLLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+++ +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YPR+LNF V+
Sbjct: 420 IEPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFKTVL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+L + PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V
Sbjct: 480 QKSYAMTLAKKSFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ I++ W GIL E+ +HKL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILL 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD YGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESR 633
>gi|240278769|gb|EER42275.1| DNA repair helicase RAD3 [Ajellomyces capsulatus H143]
Length = 773
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/607 (50%), Positives = 424/607 (69%), Gaps = 1/607 (0%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y +PE KLIYC+RT+ E+EK L
Sbjct: 1 MCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQHQPEQR-KLIYCSRTMSEIEKAL 59
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
AELK L Y+ + LG A +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 60 AELKALMKYRAQQLGFAEDFRGLGLTSRKNLCLHPSVKREKSGAVVDARCRSLTAGFVKE 119
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+ ++E C + EN + + ++PPGV+TL D+ +G+Q CPYF R M+ F V
Sbjct: 120 KKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDDITKYGEQHKQCPYFSVRRMMPFCKV 179
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
++YSY YLLDPK+A +S+E+ K+S+VVFDEAHNIDNVCIE+LS+ + +L A+R +
Sbjct: 180 IIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNIDNVCIESLSIDLTEDSLRKASRGAN 239
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ ++IE K +DA +L+ EY +LVEGL + ++NPALP D+LKEAVPGNIR
Sbjct: 240 NLERKIEEMKRSDAEKLQNEYQKLVEGLREADEARQEEQLMANPALPDDLLKEAVPGNIR 299
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
RAEHF+ L+R ++YL+ R++ + E P+SF+A + I++K LRFC ERL SL+
Sbjct: 300 RAEHFVAFLKRFIEYLKTRMKITHTISETPLSFLAHLKDLTFIERKPLRFCAERLTSLVR 359
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLE+ + +++ +Q + FATL TY +GF +I+EPF+ +P+P+L +C DA++A+
Sbjct: 360 TLELVNLEDYQPLQQVAAFATLAATYEKGFLLILEPFESETATVPNPILHFTCLDAAIAI 419
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KPVFDRF SV++TSGTLSP+++YP++L F V+ S+ M+L R PMV+TRGSDQ +
Sbjct: 420 KPVFDRFSSVIVTSGTLSPLEMYPKMLKFTTVLQESYTMTLARRSFLPMVVTRGSDQAQI 479
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+ F +R+DPGV RNYG LL+E I PDG+V FF SY YM+ II+ W GIL + +
Sbjct: 480 SSSFQIRNDPGVVRNYGNLLLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDLVWNY 539
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+ +ET D E++LAL+ YR AC GRGAV VARGKV+EGIDFD HYGR VI GVP
Sbjct: 540 KLILVETPDSQESSLALETYRTACCNGRGAVLLCVARGKVSEGIDFDHHYGRAVICIGVP 599
Query: 625 FQYTLSK 631
FQYT S+
Sbjct: 600 FQYTESR 606
>gi|444320679|ref|XP_004180996.1| hypothetical protein TBLA_0E04230 [Tetrapisispora blattae CBS 6284]
gi|387514039|emb|CCH61477.1| hypothetical protein TBLA_0E04230 [Tetrapisispora blattae CBS 6284]
Length = 779
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/634 (47%), Positives = 440/634 (69%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM ++K+ LD G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFFIDDLPVLFPYPKIYPEQYQYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L +Y+ + LG + +GL+SRKNLC++ +
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKALVELENLMDYREKELGVKEEFRGLGLTSRKNLCLHPQ 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPN--IETCEFFENYEKAASAAVLPPGVYTLQ 178
+ + VD CR+ T + + +P+ +E C++ EN K LP GV++ +
Sbjct: 120 ISKEKKGTVVDEKCRRLTNGQNKRILENDPDAKVELCDYHENLYKLDVENYLPNGVFSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + +++ CPYF+ R M+ N+++YSY YLLDPK+A +SKE+ K+S+V+FDEAHN
Sbjct: 180 KLIRYCEERTLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L A++ + + ++IE + D+ +L+ EY +LV+GL L
Sbjct: 240 IDNVCIESLSLDLTNDVLRKASKGATTLAEKIEEVREIDSSKLQDEYEKLVKGLHASDIL 299
Query: 299 PIADA-WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
+ + P L D+L EA+PGNIRRAEHF+ L+RL++YL+ R++ +V E P SF
Sbjct: 300 NAEEEPVVETPVLSEDLLTEAIPGNIRRAEHFVAFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + ID+K LRFC ERL L+ TLE+T+ ++F ++ I FATL+ TY GF +I
Sbjct: 360 LQHLKQLTFIDRKPLRFCSERLSLLVRTLEVTEIEDFNALKDIATFATLISTYEEGFLLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+++ +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YPR+LNF +
Sbjct: 420 IEPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFTTTL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+LT+ PM++T+GSDQ+ +S++F++RSDP + RNYG +LVE I PDG+V
Sbjct: 480 QKSYSMTLTKKSFLPMIITKGSDQVAISSRFEIRSDPSIVRNYGSMLVEFAKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ II+ W GIL E+ +HKL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIISMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILL 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 633
>gi|448537080|ref|XP_003871257.1| Rad3 protein [Candida orthopsilosis Co 90-125]
gi|380355614|emb|CCG25132.1| Rad3 protein [Candida orthopsilosis]
Length = 792
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/642 (46%), Positives = 434/642 (67%), Gaps = 12/642 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+C+LEMP+GTGKTI+LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPRIYPEQYAYMSDIKKTLDVGGNCILEMPSGTGKTISLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L ++ LG +GL+SRKNLC+N
Sbjct: 61 MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEFRASELGYVEDFRGLGLTSRKNLCLNPL 119
Query: 121 VLAAENRDSVDAACRKRTASWVR-----ALAAENPNIET------CEFFENYEKAASAAV 169
+ + + VD CR+ T ++ + E + C + E +
Sbjct: 120 ISREKKGNVVDEMCRRVTNGQLKEKIEKGVVTEEDQVRDPAKYSLCSYHEKLYDLDPHEL 179
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
+P GVY+ L + K+ G CPYF R M+ F N+++YSY YLLDPK+A +S+E+ K+S
Sbjct: 180 VPSGVYSFDALIRYCKEMGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIADRVSRELSKDS 239
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
+++FDEAHNIDNVCIE+LS+ + L+ ATR +++ + +E KA D+ +L+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIESLSLDLTEDVLKRATRGANKLAEAVEDMKAKDSEKLQNEYEQLV 299
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
+GL + ++SNP LP D+L EA+PGNIR+ EHF+ L+R ++YL+ R++ +V
Sbjct: 300 DGLRQAEVEREQEMFMSNPILPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHV 359
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
E P SF+ + ID+K L+FC ERL L+ TLE+T+ ++F ++ I FATLV T
Sbjct: 360 ISETPTSFLQHLKELTYIDKKPLKFCSERLSLLVKTLELTEIEDFNALKDIATFATLVST 419
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
Y GF +I+EPF+ +P+P+L +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YP+
Sbjct: 420 YDTGFQLILEPFETEGSTVPNPMLHFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPK 479
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
+LNF V+ S+ M+L R PM++T+GSDQ+ +S++F++R+DP V RNYG LL+E
Sbjct: 480 MLNFQTVIQESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAK 539
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
I PDG+V FF SY YM+ II+ W G+L E+ +HKL+ +ET D ET+LAL+ YRKAC
Sbjct: 540 ITPDGMVVFFPSYLYMESIISMWQTMGVLDEVWKHKLILVETPDAQETSLALETYRKACS 599
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGAV SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 NGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 641
>gi|399216534|emb|CCF73221.1| unnamed protein product [Babesia microti strain RI]
Length = 790
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/668 (47%), Positives = 459/668 (68%), Gaps = 40/668 (5%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
++F ++ + V+FPY +YPEQ +Y+ LKRALDA GH +LEMPTGTGKT+AL S IT+Y
Sbjct: 2 VLFWVDGIQVFFPYSKVYPEQLAYLRCLKRALDAGGHAVLEMPTGTGKTVALFSFITAYQ 61
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
++ P++P KLIYCTRT+ EMEK L EL+ + Y+++ L ILAIGL+SR+NLC++ +
Sbjct: 62 MAHPQSP-KLIYCTRTIQEMEKALMELEKVIEYRSQQLNTPTDILAIGLASRRNLCIHPK 120
Query: 121 VLAAENRDSVDAACRKRTASWVRA-----LAAEN----PNIET------CEFFENYEKAA 165
V + + VD CRK T W R EN P+IE+ C +FE+ E+
Sbjct: 121 VSLVADGNQVDDECRKLTVMWQRVDKINVTTCENVQEIPDIESLNNSGLCGYFEHVEQFW 180
Query: 166 SAAVLPPGVYTLQDLRAF---------GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPK 216
LP GVYTL+ L+ + GK+ CPYF+AR ++ AN++V++YQYLLDPK
Sbjct: 181 LPEYLPKGVYTLEKLKEYSKNFVHPFTGKKCSPCPYFVARKCLERANILVFNYQYLLDPK 240
Query: 217 VAGII-------------SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
V+ + K ++ VVVFDEAHNID+VCIEALSV + LEGA+RNL
Sbjct: 241 VSKTVLYNLIRFKDNFDNIKRDKEPFVVVFDEAHNIDDVCIEALSVELNLAILEGASRNL 300
Query: 264 SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNI 323
++Q+IER + D L++EY LV + + + + ++S P +LK+ +PGNI
Sbjct: 301 LYLSQQIERMEREDMETLKSEYQMLVSEIVDKLDDFTLEDFMS-PVWTGQMLKKYMPGNI 359
Query: 324 RRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLM 383
R+A HF+ ++ +V YL+ ++ ++ +GP++F+ +++ GID + FCY RL L+
Sbjct: 360 RKATHFIKFMQSIVCYLKEYIQVPEIKSQGPLTFLHNLSTEIGIDVSSFNFCYNRLKLLI 419
Query: 384 LTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLA 443
TL+ T ++ + + DF TL+ TY++GF +I+EPF E + I DP+L LSC DASLA
Sbjct: 420 TTLKFTSINDLSPLFIVADFCTLIVTYSKGFIVIVEPFPEAV-GIYDPILHLSCLDASLA 478
Query: 444 VKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP 503
+K VF+ F+SV++TSGT+SP++ YP++L+F PV++ SF MSL R CICP++++RGS+Q+P
Sbjct: 479 IKHVFNTFKSVILTSGTISPLEFYPKILDFTPVLTESFPMSLDRKCICPIIVSRGSNQVP 538
Query: 504 VSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQ 563
++TKFD R D V R+YG L+V++ VPDG+VCFF SY YM+ I++ W +SGI+ IM+
Sbjct: 539 ITTKFDARDDQNVLRSYGSLIVDLSKHVPDGMVCFFPSYLYMEHILSAWYESGIIANIMK 598
Query: 564 HKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
+KL+F+ET+DVV T LAL NYRKACD GRGA+FFS+ARGKVAEGIDFDRHYGR V++ GV
Sbjct: 599 NKLIFMETKDVVTTILALHNYRKACDYGRGAIFFSIARGKVAEGIDFDRHYGRCVVVIGV 658
Query: 624 PFQYTLSK 631
PFQY+LS+
Sbjct: 659 PFQYSLSR 666
>gi|402078170|gb|EJT73519.1| DNA repair helicase rad15 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 791
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/630 (48%), Positives = 431/630 (68%), Gaps = 1/630 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M+F ++D+ V FPY IYPEQY+YM +LKR LDA G+C+LEMP+GTGKT LLSLI +Y
Sbjct: 1 MLFYIDDLPVIFPYPRIYPEQYAYMCDLKRTLDAGGNCVLEMPSGTGKTATLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAEL+ L Y+ LG +GL+SRKNLC++
Sbjct: 61 QHNPEHR-KLIYCSRTMSEIEKALAELRALMKYRAEQLGKEEDFRGLGLTSRKNLCLHPA 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +++ + +++ C + +N + ++P GV+T L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFIKEKKDKGEDVDVCVYHDNLDLLEPHNLIPNGVWTFDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+Q+ NV++YSY YLLDPK+A +SKE+ ++S++VFDEAHNID
Sbjct: 180 LRYGEQHKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS + +L ATR + I++ + TD +L EY +LV GL
Sbjct: 240 NVCIESLSTDLTEDSLRKATRGAQNLENRIKQMRETDQKQLEDEYQKLVAGLRDADEARQ 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA+++NP LP D+++EAVPGNIRRAEHF+ L+R ++YL+ RL+ V E P SF+A
Sbjct: 300 EDAFMANPVLPDDLIREAVPGNIRRAEHFVAFLKRFIEYLKTRLKVLEVISETPPSFLAH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + I++K LRFC ERL SL+ TLE+T+ ++F +Q + FATLV TY +GF +++EP
Sbjct: 360 LKEYTFIEKKPLRFCAERLTSLVRTLELTNIEDFQPLQEVATFATLVATYEKGFLLLLEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ + +PVL +C DA++A+KPVF+RF++V+ITSGTLSP+++YP++L F +V S
Sbjct: 420 YETVKSKVVNPVLHFTCLDAAIAIKPVFERFKTVIITSGTLSPLEMYPKMLGFDAIVQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++T+GSDQ +S+ F +R+D V RNYG LL E I PDG+V FF
Sbjct: 480 YSMTLGRRSFLPMIVTKGSDQAAISSSFAVRTDLPVVRNYGNLLTEFAKITPDGMVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W IL+E+ ++KL+ +ET D ET +AL+ YR AC G GAV F VA
Sbjct: 540 SYFYMESIISMWQGMNILEEVWKYKLILVETPDAQETAVALETYRTACCNGTGAVMFCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
RGKV+EGIDFD YGR V+ GVP+QYT S
Sbjct: 600 RGKVSEGIDFDHQYGRAVLCIGVPYQYTES 629
>gi|448115115|ref|XP_004202752.1| Piso0_001608 [Millerozyma farinosa CBS 7064]
gi|359383620|emb|CCE79536.1| Piso0_001608 [Millerozyma farinosa CBS 7064]
Length = 795
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/643 (46%), Positives = 435/643 (67%), Gaps = 14/643 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPY IYPEQYSYM ++KR LD G+C+LEMP+GTGKTI+LLS+ +Y
Sbjct: 1 MKFYIDDLPILFPYPKIYPEQYSYMCDIKRTLDVGGNCILEMPSGTGKTISLLSITVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L Y+ LG + +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KVVYCSRTMSEIEKALIELHNLMKYRAEQLGYVEEFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNI------------ETCEFFENYEKAASAA 168
V VD CR+ T ++ EN + + C + E
Sbjct: 120 VSKEPKGVVVDEKCRRITNGQLKQ-QIENGKVSEEDQKRHPETKQLCSYHEELNDMEQHN 178
Query: 169 VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
++P GVY+ L + K +G CPYF R M+ + N+++YSY YLLDPK+A +SK++ ++
Sbjct: 179 LIPAGVYSFDALTNYCKARGTCPYFTVRRMIPYCNIIIYSYHYLLDPKIAERVSKDISRD 238
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRL 288
S+++FDEAHNIDNVCIE+LS+ + TL+ ATR +++ I+ K+ D+ +L+ EY +L
Sbjct: 239 SIIIFDEAHNIDNVCIESLSLDLTDDTLQRATRGATKLGDAIDDMKSQDSEKLQNEYEKL 298
Query: 289 VEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETEN 348
VEGL + ++SNP LP D+L EAVPGNIR+ EHF+ L+R ++YL+ R++ +
Sbjct: 299 VEGLRQSEIEREEELFMSNPILPKDLLDEAVPGNIRKGEHFISFLKRFIEYLKTRMKVLH 358
Query: 349 VEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVG 408
V E P SF+ + ID+K LRFC ERL L+ TLE+T+ ++F ++ I FATLV
Sbjct: 359 VISETPTSFLQHLKDLTFIDRKPLRFCSERLSLLVRTLELTEIEDFTALKDIATFATLVS 418
Query: 409 TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYP 468
TY GF +I+EPF+ +P+P+L +C DAS+A+KPVFDRF SV+ITSGT+SP+D+YP
Sbjct: 419 TYETGFQLILEPFETEGSSVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYP 478
Query: 469 RLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMV 528
R+LNF V+ S+ ++L R PM++T+G+DQ+ +S++F++R+DP V RNYG L++E
Sbjct: 479 RMLNFQTVIQESYTITLARRSFLPMIVTKGADQVSISSRFEIRNDPSVVRNYGSLVIEFS 538
Query: 529 SIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKAC 588
I PDG+V FF SY YM+ II+ W + G+L E+ ++KL+ +ET D ET+LAL+ +RKAC
Sbjct: 539 KITPDGMVVFFPSYLYMESIISMWQNMGVLDEVWKYKLILVETPDAQETSLALETFRKAC 598
Query: 589 DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGAV SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 599 SNGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 641
>gi|241957053|ref|XP_002421246.1| 5' to 3' DNA helicase, putative; DNA repair helicase Rad3
homologue, putative; transcription initiation factor
TFIIH subunit, putative [Candida dubliniensis CD36]
gi|223644590|emb|CAX40578.1| 5' to 3' DNA helicase, putative [Candida dubliniensis CD36]
Length = 781
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/642 (46%), Positives = 436/642 (67%), Gaps = 12/642 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+C+LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L ++ LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 119
Query: 121 VLAAENRDSVDAACRKRTASWVR-----ALAAENPNI---ET---CEFFENYEKAASAAV 169
+ VD CR+ T ++ + E + ET C + E +
Sbjct: 120 ISKERKGVVVDEKCRRITNGQLKEKIEKGVITEEDQVRDPETNSLCSYHEKLYDLEPHNL 179
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
+P GVY+ L + K++G CPYF R M+ F N+++YSY YLLDPK+A +S+E+ K+S
Sbjct: 180 VPSGVYSFDALLKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDS 239
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
+V+FDEAHNIDNVCIE+LS+ + +TL+ A+R +++ + IE K D+ +L+ EY +LV
Sbjct: 240 IVIFDEAHNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKTQDSEKLQNEYEQLV 299
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
EGL + +++NP LP D+L EA+PGNIR+ EHF+ L+R ++YL+ R++ +V
Sbjct: 300 EGLRQAEIARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHV 359
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
E P SF+ + I++K LRFC ERL L+ TLE+T+ ++F ++ I FATLV T
Sbjct: 360 ISETPTSFLQHLKELTYIERKPLRFCSERLSLLVRTLELTEIEDFNALKDIATFATLVST 419
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
Y GF +I+EP++ +P+P+L +C DAS+A+KPVFDRF SV+ITSGT+SP+D+YP+
Sbjct: 420 YDSGFQLILEPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPK 479
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
+L F V+ S+ M+L R PM++T+GSDQ+ +S++F++R+DP V RNYG LL+E
Sbjct: 480 MLKFETVIQESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAK 539
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
I PDG+V FF SY YM+ II+ W + G+L E+ +HKL+ +ET D ET+LAL+ YRKAC
Sbjct: 540 ITPDGMVVFFPSYLYMESIISMWQNMGVLDEVWKHKLILVETPDAQETSLALETYRKACS 599
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGAV SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 NGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 641
>gi|448112560|ref|XP_004202128.1| Piso0_001608 [Millerozyma farinosa CBS 7064]
gi|359465117|emb|CCE88822.1| Piso0_001608 [Millerozyma farinosa CBS 7064]
Length = 795
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/643 (46%), Positives = 435/643 (67%), Gaps = 14/643 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPY IYPEQYSYM ++KR LD G+C+LEMP+GTGKTI+LLS+ +Y
Sbjct: 1 MKFYIDDLPILFPYPKIYPEQYSYMCDIKRTLDVGGNCILEMPSGTGKTISLLSITVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L Y+ LG + +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KVVYCSRTMSEIEKALIELHNLMKYRAEQLGYVEEFRGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNI------------ETCEFFENYEKAASAA 168
+ VD CR+ T ++ EN + + C + E
Sbjct: 120 ISKEPKGVVVDEKCRRITNGQLKQ-QIENGKVSEEDQKRHPETKQLCSYHEELYDMEQHN 178
Query: 169 VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
++P GVY+ L + K +G CPYF R M+ + N+++YSY YLLDPK+A +SK++ ++
Sbjct: 179 LIPAGVYSFDALINYCKARGTCPYFTVRRMIPYCNIIIYSYHYLLDPKIAERVSKDISRD 238
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRL 288
S+++FDEAHNIDNVCIE+LS+ + TL+ ATR +++ I+ K+ D+ +L+ EY +L
Sbjct: 239 SIIIFDEAHNIDNVCIESLSLDLTDDTLQRATRGATKLGDAIDDMKSQDSEKLQNEYEKL 298
Query: 289 VEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETEN 348
VEGL + ++SNP LP D+L EAVPGNIR+ EHF+ L+R ++YL+ R++ +
Sbjct: 299 VEGLRQSEIEREEELFMSNPILPKDLLDEAVPGNIRKGEHFISFLKRFIEYLKTRMKVLH 358
Query: 349 VEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVG 408
V E P SF+ + ID+K LRFC ERL L+ TLE+T+ ++F ++ I FATLV
Sbjct: 359 VISETPTSFLQHLKDLTFIDRKPLRFCSERLSLLVRTLELTEIEDFTALKDIATFATLVS 418
Query: 409 TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYP 468
TY GF +I+EPF+ +P+P+L +C DAS+A+KPVFDRF SV+ITSGT+SP+D+YP
Sbjct: 419 TYETGFQLILEPFETEGSSVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYP 478
Query: 469 RLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMV 528
R+LNF V+ S+ ++L R PM++T+G+DQ+ +S++F++R+DP V RNYG LL+E
Sbjct: 479 RMLNFQTVIQESYTITLARRSFLPMIVTKGADQVSISSRFEIRNDPSVVRNYGSLLIEFS 538
Query: 529 SIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKAC 588
I PDG+V FF SY YM+ II+ W + G+L E+ ++KL+ +ET D ET+LAL+ +RKAC
Sbjct: 539 KITPDGMVVFFPSYLYMESIISMWQNMGVLDEVWKYKLILVETPDAQETSLALETFRKAC 598
Query: 589 DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGAV SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 599 SNGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 641
>gi|121701205|ref|XP_001268867.1| TFIIH complex helicase Rad3, putative [Aspergillus clavatus NRRL 1]
gi|119397010|gb|EAW07441.1| TFIIH complex helicase Rad3, putative [Aspergillus clavatus NRRL 1]
Length = 771
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/607 (49%), Positives = 426/607 (70%), Gaps = 1/607 (0%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M +LK+ LDA+G+C+LEMP+GTGKT+ LLSLI +Y PE+ KLIYC+RT+ E+EK L
Sbjct: 1 MCDLKKTLDAQGNCVLEMPSGTGKTVTLLSLIVAYQQHYPEHR-KLIYCSRTMSEIEKAL 59
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
AELK L Y+T+ LG A+GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 60 AELKELMKYRTQQLGYTEDFRALGLTSRKNLCLHPSVKREKSGAVVDARCRSLTAGFVKE 119
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
++E C + EN + ++PPGV+TL L +G++ CPYF AR M+ + NV
Sbjct: 120 KKERGEDVELCIYHENLDLLEPHNLVPPGVFTLDGLLKYGEEHKQCPYFSARRMMPYCNV 179
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNIDNVCIEALS+ + +L AT+ +
Sbjct: 180 IIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNIDNVCIEALSIDITEDSLRKATKGAN 239
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ ++I+ K++DA +L+ EY++LVEGL + +++NP LP D+LKEAVPGNIR
Sbjct: 240 NLERKIQEMKSSDAEKLQNEYSKLVEGLREAEQAREEEQFIANPVLPDDLLKEAVPGNIR 299
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
RAEHF+ L+R ++YL+ R++ + E P SF+ + I++K LRFC ERL SL+
Sbjct: 300 RAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFLTHVKDLTFIERKPLRFCAERLTSLVR 359
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLE+ + +++ +Q + FATLV TY +GF +I+EPF+ +P+P+L +C DAS+A+
Sbjct: 360 TLELINIEDYQPLQEVATFATLVATYEKGFLLILEPFESEAATVPNPILHFTCLDASIAI 419
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KPVFDRF SV+ITSGTLSP+++YP++L+F V+ S+ M+L R PM++TRGSDQ +
Sbjct: 420 KPVFDRFSSVIITSGTLSPLEMYPKMLDFDTVLQESYSMTLARRSFLPMIVTRGSDQAQI 479
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+ F +R+DPGV RNYG L++E I PDGIV FF SY YM+ I++ W GIL I +
Sbjct: 480 SSSFQIRNDPGVVRNYGNLVLEFSRITPDGIVVFFPSYLYMESIVSMWQGMGILDSIWNY 539
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+ +ET D E++LAL+ YR AC GRGA+ F VARGKV+EGIDFD HYGR V+ GVP
Sbjct: 540 KLILVETPDAQESSLALETYRTACCNGRGAILFCVARGKVSEGIDFDHHYGRAVLCIGVP 599
Query: 625 FQYTLSK 631
FQYT S+
Sbjct: 600 FQYTESR 606
>gi|388580610|gb|EIM20923.1| DNA repair helicase [Wallemia sebi CBS 633.66]
Length = 776
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/606 (50%), Positives = 432/606 (71%), Gaps = 18/606 (2%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
MP+GTGKT++LLSLI +Y + KL+YC+RTV E+EK LAELK L Y+ G A
Sbjct: 1 MPSGTGKTVSLLSLIVAY-QQHYDADRKLVYCSRTVPEIEKALAELKRLMAYRADQ-GYA 58
Query: 102 AK---ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNI-ETCEF 157
AK + +GLSSRKNLC++ + +VDA CR T++ +P E C +
Sbjct: 59 AKDSGYIGLGLSSRKNLCLHPSISQERRGKAVDARCRDLTSAHAVQKGRSDPGSHELCSY 118
Query: 158 FENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKV 217
E + A ++PPG++T++D++ FG+Q+G+CPYF R MV F N ++YS+ YLLDPKV
Sbjct: 119 HEGLSEVAPGEIVPPGIWTIEDVKKFGQQKGYCPYFSVRRMVPFCNTIIYSFHYLLDPKV 178
Query: 218 AGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATD 277
A ++S+EM K+++VVFDEAHNIDNVCIE+LS+ + R LE A+R++ +++++I K D
Sbjct: 179 AEMVSREMSKDAIVVFDEAHNIDNVCIESLSIDLTRPMLESASRSVDKLSEKIAEVKEND 238
Query: 278 AGRLRAEYNRLVEGLALRGNLPIA------------DAWLSNPALPSDILKEAVPGNIRR 325
A RL+ EY +LVEG+ P A + LSNP LP+D+LKEA+PGNIR+
Sbjct: 239 AQRLQDEYAKLVEGMQDADQPPPAANDEMAMIRRQDEDVLSNPVLPADLLKEAIPGNIRK 298
Query: 326 AEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLT 385
AEHF+ L+R V+YL+ R+ +V E P+SF+ + I++K LRFC +RL +L+ T
Sbjct: 299 AEHFVSFLKRFVEYLKTRMRVLHVVAETPLSFLQHLRDITYIERKPLRFCSDRLSNLIKT 358
Query: 386 LEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVK 445
LE+ DE+ +Q++ FATLV TY +GF +I+EPF+ IP+P+ L+C DAS+A+
Sbjct: 359 LELERLDEYSALQSVAAFATLVSTYEKGFLLILEPFESETATIPNPIFHLTCQDASIAIA 418
Query: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
PVF+RF SV+ITSGT+SP+D+YP++LNF+ +V S+ M+L+R+C PMV+TRGSDQ+ VS
Sbjct: 419 PVFERFSSVIITSGTISPLDMYPKMLNFNAIVQESYPMTLSRNCFIPMVITRGSDQVAVS 478
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
++F++R+DP V RNYG++L+E ++PDGIV FF SY YM+ I++ WN+ IL E+ +HK
Sbjct: 479 SRFEVRNDPAVVRNYGQMLIEYSKVIPDGIVAFFPSYLYMESIVSAWNEMQILDEVWKHK 538
Query: 566 LVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L+F+ET D ET++AL+N+RKACD GRGAV SVARGKV+EGIDFD H+GR VIMFGVP+
Sbjct: 539 LIFVETPDAPETSIALENFRKACDNGRGAVMLSVARGKVSEGIDFDHHFGRAVIMFGVPY 598
Query: 626 QYTLSK 631
QYT S+
Sbjct: 599 QYTESR 604
>gi|427782715|gb|JAA56809.1| Putative excision repair cross-complementing rodent repair
deficiency complementation group 2 [Rhipicephalus
pulchellus]
Length = 718
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/590 (50%), Positives = 422/590 (71%), Gaps = 1/590 (0%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
MP+GTGKT+ LLSLI +Y + P KL+YC+RT+ E+EK + EL+ L + R G
Sbjct: 1 MPSGTGKTVTLLSLILAYQKANPAMISKLLYCSRTLPEIEKVVEELRRLLEHYKRETGED 60
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
+L + L+SRKNLC++ +V + VD C TAS+ RA A +P + C FFEN+
Sbjct: 61 MDLLGLCLTSRKNLCIHPQVSLERDGRVVDGRCFSLTASYRRA-QATDPETQCCTFFENF 119
Query: 162 EKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
+ LP G+Y++ DL+ +G+++ CPYF+AR V A VVVYSY YLLDPK+A ++
Sbjct: 120 DSQGRDIPLPTGIYSVDDLKEYGRERQLCPYFVARQAVLNAKVVVYSYHYLLDPKIAEVV 179
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRL 281
SKEM + +VV+FDEAHNIDNVCIE++SV + ++T+EG+ N+ ++ I+ K DA +L
Sbjct: 180 SKEMSRNAVVIFDEAHNIDNVCIESMSVRLTKRTIEGSMENIDNLDHTIKELKEQDAEKL 239
Query: 282 RAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLR 341
R EY +L+EGL AD L+NP LP ++L+EAVPGNIR AEHF+ LRRLV+Y++
Sbjct: 240 RTEYEQLLEGLRQAKEAREADLILANPVLPDEVLEEAVPGNIRLAEHFVSFLRRLVEYVK 299
Query: 342 GRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTIC 401
R+ +++ +E P +F+ I +++K LRF ERL SL+ TLE+ D F + +C
Sbjct: 300 MRMRAQHMVQESPAAFLKDILQKVCLERKPLRFSAERLRSLLRTLEVPDPTNFSPLVRLC 359
Query: 402 DFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTL 461
FA+LV TYT+GF+II+EP+DER P +P+PV+ LSC DASL++KPVF+RFQSV+ITSGTL
Sbjct: 360 HFASLVSTYTKGFTIIVEPYDERSPGVPNPVINLSCMDASLSIKPVFNRFQSVIITSGTL 419
Query: 462 SPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYG 521
SP+++YP++L+F PVVS S ++L R ICP+++++GSDQ+ +S++F+ R + V RNYG
Sbjct: 420 SPVEMYPKILDFRPVVSASLSITLARPSICPLIVSKGSDQVALSSRFETREEVSVVRNYG 479
Query: 522 KLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLAL 581
LLVE+ S VPDG+VCFF SY Y++ ++A W + G+L ++ + KL+F+ET D ET LAL
Sbjct: 480 ALLVELASCVPDGLVCFFTSYVYLESVVAAWYEQGVLDQLQRRKLLFLETPDAAETALAL 539
Query: 582 DNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
NY KAC+ GRGAV SVARGKV+EG+DFD H GR V+MFG+PF YT S+
Sbjct: 540 ANYVKACENGRGAVLLSVARGKVSEGVDFDHHLGRAVLMFGIPFVYTQSR 589
>gi|403216750|emb|CCK71246.1| hypothetical protein KNAG_0G01890 [Kazachstania naganishii CBS
8797]
Length = 773
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/634 (46%), Positives = 440/634 (69%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM ++KR LDA G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFFIDDLPVLFPYPKIYPEQYHYMCDIKRTLDAGGNSILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L +Y+ + LG A + +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKALVELENLMDYRAKELGHAEEFRGLGLTSRKNLCLHPV 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPN--IETCEFFENYEKAASAAVLPPGVYTLQ 178
V VD CR+ T + E+PN +E C + EN LP GV++ +
Sbjct: 120 VRKERKGTVVDEKCRRLTNGVNKRKLEEDPNAEVELCAYHENLYDLDVENYLPNGVFSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + +++ CPYF+ R M+ N+++YSY YLLDPK+A +S+E+ K+S+V+FDEAHN
Sbjct: 180 KLIKYCEEKTLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSREVSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L A + + + ++++ ++ DA +L+ EY++LV+GL + +
Sbjct: 240 IDNVCIESLSLDLTNDVLRRAAKGANSLEEKVQEVRSVDATKLQDEYSKLVQGLHMVDIV 299
Query: 299 PIAD-AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
P + ++ P L D+L EA+PGNIRRAEHF+ ++RL++YL+ R++ +V E P SF
Sbjct: 300 PAQEETFVETPVLSEDLLTEAIPGNIRRAEHFVSFMKRLIEYLKTRMKVLHVISETPKSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + ID+K LRFC ERL L+ TLE+T+ ++F ++ I FATL+ TY GF +I
Sbjct: 360 LQHLKHLTFIDRKPLRFCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEDGFQLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+++ +C DAS+A+KPVF+ F SV+ITSGT+SP+D+YP++LNF V+
Sbjct: 420 IEPYEIENAAVPNPIMRFTCLDASIAIKPVFETFSSVIITSGTISPLDMYPKMLNFETVL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+L + PM++T+GSDQ+ +S++F++R+DP + RNYG ++VE I PDG+V
Sbjct: 480 QKSYAMTLAKKSFLPMIVTKGSDQVAISSRFEIRNDPSIVRNYGSMMVEFAKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ I++ W GIL E+ +HKL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILM 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD YGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESR 633
>gi|45201210|ref|NP_986780.1| AGR114Cp [Ashbya gossypii ATCC 10895]
gi|44986064|gb|AAS54604.1| AGR114Cp [Ashbya gossypii ATCC 10895]
gi|374110029|gb|AEY98934.1| FAGR114Cp [Ashbya gossypii FDAG1]
Length = 774
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/636 (47%), Positives = 441/636 (69%), Gaps = 8/636 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM ++K+ LDA G+ +LEMP+GTGKT++LL+L +Y
Sbjct: 1 MKFFIDDLPVIFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLALTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ E+ K+IYC+RT+ E+EK L EL+ L +Y+ + L + +GL+SRKNLC++ R
Sbjct: 61 MHYKEHR-KIIYCSRTMSEIEKALVELESLMDYRAKELQYQEEFRGLGLTSRKNLCLHPR 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENP--NIETCEFFENYEKAASAAVLPPGVYTLQ 178
V VD CR+ T RA ++P N+E C + EN + LP GVY+ +
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQARARKQQDPEANVELCNYHENMYNYSPEEYLPLGVYSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + + + CPYF R M+ N+++YSY YLLDPK+ +S+E+ K+++V+FDEAHN
Sbjct: 180 KLIRYCEDKTLCPYFTVRRMISMCNIIIYSYHYLLDPKIEERVSREVSKDAIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + + L+ A++ S + +++E + D +L+ EY++LV+GL R N
Sbjct: 240 IDNVCIESLSLDLTKDLLKRASKGASVLGKKVEEVRRVDTKKLQDEYDKLVQGL--RAND 297
Query: 299 PIAD---AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPV 355
+ + + +P LP+DILK+AVPGNIRRAEHF+ L+R ++YL+ R++ +V E P
Sbjct: 298 IMEENEEPLVESPVLPADILKDAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLHVISETPN 357
Query: 356 SFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFS 415
SF+ + ID+K LR+C ERL L TLEI + +EF ++ I FATL+ TY GF
Sbjct: 358 SFLQHLKQLTFIDRKPLRYCAERLSLLARTLEIDEVEEFNALKDIATFATLISTYESGFL 417
Query: 416 IIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHP 475
+IIEP++ +P+P+++ +C DAS+A+KPVF++F SV+ITSGT+SP+D+YPR+LNF
Sbjct: 418 LIIEPYEIENAAVPNPIMRFTCLDASIAIKPVFEKFSSVIITSGTISPLDMYPRMLNFET 477
Query: 476 VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGI 535
V+ +S+ M+L + PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+
Sbjct: 478 VLQKSYSMTLAQKSFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSILVEFAKITPDGM 537
Query: 536 VCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAV 595
V FF SY YM+ II+TW GIL E+ ++KL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 538 VVFFPSYLYMESIISTWQTMGILDEVWKYKLILVETPDAQETSLALETYRKACSNGRGAI 597
Query: 596 FFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGK++EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 598 LLSVARGKISEGIDFDHHYGRTVLMIGIPFQYTESR 633
>gi|255718745|ref|XP_002555653.1| KLTH0G14300p [Lachancea thermotolerans]
gi|238937037|emb|CAR25216.1| KLTH0G14300p [Lachancea thermotolerans CBS 6340]
Length = 782
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/633 (46%), Positives = 436/633 (68%), Gaps = 3/633 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM ++K+ LDA G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVIFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLAVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
E+ K+IYC+RT+ E+EK L EL+ L +Y+++ LG +GL+SRKNLC++ R
Sbjct: 61 THYAEHR-KIIYCSRTMSEIEKALVELESLMDYRSKELGHKEHFRGLGLTSRKNLCLHPR 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENP--NIETCEFFENYEKAASAAVLPPGVYTLQ 178
V VD CR+ T A ++P NIE C+F EN +P GVY+ +
Sbjct: 120 VRKERKGTVVDEKCRRMTNGQAARKAEQDPTANIELCDFHENLNTMDPENYVPVGVYSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + +++ CPYF R M+ ++++YSY YLLDPK++ +SKE+ ++++V+FDEAHN
Sbjct: 180 KLIKYCEERTMCPYFTVRRMIAMCDIMIYSYHYLLDPKISERVSKEVSRDAIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L+ AT+ + +N++I+ + D+ RL+ EY +LV GL L
Sbjct: 240 IDNVCIESLSLDLTNDVLKRATKGANNLNEKIQEVRQVDSQRLQDEYEKLVNGLRAPDML 299
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
+ + +P L D+L EA+PGNIRRAEHF+ L+R ++YL+ R++ +V E P SF+
Sbjct: 300 GAEEPPVESPVLSQDLLSEAIPGNIRRAEHFVSFLKRFIEYLKTRMKVLHVISETPNSFL 359
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
+ I++K LRFC ERL L+ TLE+++ +EF ++ I FATL+ TY GF +II
Sbjct: 360 QHLKQLTFIERKPLRFCSERLSLLVRTLEVSEIEEFTALKDIATFATLISTYEEGFVLII 419
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EP++ +P+P+++ +C DAS+A+KPVFD+F SV+ITSGT+SP+D+YP++LNF V+
Sbjct: 420 EPYEIENAAVPNPIMRFTCLDASIAIKPVFDKFSSVIITSGTISPLDMYPKMLNFETVLQ 479
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCF 538
S+ M+L + PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V F
Sbjct: 480 ESYAMTLAKKSFLPMIVTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVF 539
Query: 539 FVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS 598
F SY YM+ II+ W GIL E+ ++KL+ +ET D ET+LAL+ YRKAC GRGA+ S
Sbjct: 540 FPSYLYMESIISMWQTMGILDEVWKYKLILVETPDAQETSLALETYRKACSNGRGAILLS 599
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
VARGKV+EGIDFD H+GR V+M G+PFQYT S+
Sbjct: 600 VARGKVSEGIDFDHHFGRTVLMIGIPFQYTESR 632
>gi|70996012|ref|XP_752761.1| TFIIH complex helicase Rad3 [Aspergillus fumigatus Af293]
gi|66850396|gb|EAL90723.1| TFIIH complex helicase Rad3, putative [Aspergillus fumigatus Af293]
gi|159131515|gb|EDP56628.1| TFIIH complex helicase Rad3, putative [Aspergillus fumigatus A1163]
Length = 770
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/607 (50%), Positives = 424/607 (69%), Gaps = 1/607 (0%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y PE+ KLIYC+RT+ E+EK L
Sbjct: 1 MCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQQHYPEHR-KLIYCSRTMSEIEKAL 59
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
AELK L ++++ LG A+GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 60 AELKELMKFRSQQLGYTEDFRALGLTSRKNLCLHPSVKREKSGTVVDARCRSLTAGFVKE 119
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
++E C + EN + ++PPGV+TL L +G++ CPYF AR M+ + NV
Sbjct: 120 KKERGEDVELCIYHENLDLLEPHNLVPPGVFTLDGLLKYGEEHKQCPYFSARRMMPYCNV 179
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNIDNVCIEALS+ + +L ATR +
Sbjct: 180 IIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNIDNVCIEALSIDITEDSLRKATRGAN 239
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ ++I K++DA +L+ EY++LVEGL D +++NP LP D+LKEAVPGNIR
Sbjct: 240 NLERKISEMKSSDAEKLQNEYSKLVEGLREAEQARDEDQFIANPVLPDDLLKEAVPGNIR 299
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
RAEHF+ L+R ++YL+ R++ + E P SF+ + I++K LRFC ERL SL+
Sbjct: 300 RAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFLTHVKDLTFIERKPLRFCAERLTSLVR 359
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLE+ + +++ +Q + FATLV TY +GF +I+EPF+ +P+PVL +C DA++A+
Sbjct: 360 TLELINIEDYQPLQEVATFATLVSTYDKGFLLILEPFESETATVPNPVLHFTCLDAAIAI 419
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KPVFDRF SV+ITSGTLSP+++YP++L F V+ S+ M+L R PM++TRGSDQ +
Sbjct: 420 KPVFDRFSSVIITSGTLSPLEMYPKMLGFPTVLQESYTMTLARRSFLPMIVTRGSDQAQI 479
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+ F +R+DPGV RNYG +++E I PDGIV FF SY YM+ II+ W GIL I +
Sbjct: 480 SSSFQIRNDPGVVRNYGNIVLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDSIWNY 539
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+ +ET D E++LAL+ YR AC GRGA+ F VARGKV+EGIDFD HYGR V+ GVP
Sbjct: 540 KLILVETPDAQESSLALETYRTACCNGRGAILFCVARGKVSEGIDFDHHYGRAVLCIGVP 599
Query: 625 FQYTLSK 631
FQYT S+
Sbjct: 600 FQYTESR 606
>gi|156846864|ref|XP_001646318.1| hypothetical protein Kpol_1032p54 [Vanderwaltozyma polyspora DSM
70294]
gi|156116993|gb|EDO18460.1| hypothetical protein Kpol_1032p54 [Vanderwaltozyma polyspora DSM
70294]
Length = 776
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/634 (47%), Positives = 440/634 (69%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM ++K+ LDA G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYHYMCDMKKTLDAGGNSILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L +Y++R LG A +GL+SRKNLC++ +
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKALIELENLMDYRSRELGYAEDFRGLGLTSRKNLCLHPQ 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENP--NIETCEFFENYEKAASAAVLPPGVYTLQ 178
V VD CR+ T + +P +E C++ EN LP GVY+ +
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLESDPEAKVELCDYHENLYDLEIEDYLPKGVYSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + +Q+ CPYF+ R M+ N+++YSY YLLDPK+A +S+E+ K+S+V+FDEAHN
Sbjct: 180 RLLKYCEQKTLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSREVSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L+ AT+ + + +IE + D+ +L+ EY +LV+GL L
Sbjct: 240 IDNVCIESLSLDLTNDMLKRATKGANALANKIEEVREVDSQKLQDEYEKLVKGLHTADIL 299
Query: 299 PIADAWLSNPALPS-DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
+ L + S D+L EA+PGNIRRAEHF+ L+RL++YL+ R++ +V E P SF
Sbjct: 300 EEEEEPLVEVPVLSQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + ID+K LRFC ERL L+ TLE+++ ++F ++ I FATLV TY GF +I
Sbjct: 360 LQHLKQLTFIDRKPLRFCSERLSLLVRTLEVSEIEDFNALKDIATFATLVSTYEDGFLLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+L+ +C DAS+A+KPVF++F SV+ITSGT+SP+D+YPR+LNF+ V+
Sbjct: 420 IEPYEIENAAVPNPILRFTCLDASIAIKPVFEKFSSVIITSGTISPLDMYPRMLNFNTVL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+LT+ PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V
Sbjct: 480 EKSYAMTLTKKSFLPMIVTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ II+ W GIL E+ +HKL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIISMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILL 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 633
>gi|340514003|gb|EGR44274.1| DNA excision repair helicase [Trichoderma reesei QM6a]
Length = 783
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/631 (47%), Positives = 426/631 (67%), Gaps = 11/631 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++++ V FPY IYPE LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFNIDNLPVLFPYPRIYPE----------TLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 50
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE KLIYC+RT+ E+EK L EL+ L Y+T LG + +GL+SRKNLC++
Sbjct: 51 QHMPEKR-KLIYCSRTMSEIEKALVELQSLMKYRTEQLGYEEEFRGLGLTSRKNLCLHPS 109
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ N++ C + +N + ++P GV++ L
Sbjct: 110 VKREKSGSIVDARCRSLTAGFVKEKKDRGENVDVCVYHDNLDLLEPHNLIPNGVWSFDAL 169
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF AR M+++ NVV++SY YLLDPK+A +SK+ K+ +VVFDEAHNID
Sbjct: 170 LRYGEEHKQCPYFTARRMMEYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNID 229
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALS + ++ ATR+ + + I + TD +L+ EY +LV+GL
Sbjct: 230 NVCIEALSTDITEDSIRKATRSAQHLERRIAEMRETDQEQLQNEYEKLVQGLRAADESRQ 289
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA+++NPALP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ V E P SF+A
Sbjct: 290 EDAFMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFLEYLKTRMKVRQVISETPPSFLAH 349
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ H I++K LRFC ERL SL+ TLE+T+ +++ +Q + FATLV TY +GF +I+EP
Sbjct: 350 LKEHTFIEKKPLRFCAERLTSLVRTLELTNIEDYQALQEVATFATLVATYEKGFLLILEP 409
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
++ +P+P L +C DA++A++PVF+RF SV+ITSGT+SP+++YP++L+F V+ S
Sbjct: 410 YESDTAEVPNPTLHFTCLDAAIAIRPVFERFYSVIITSGTISPLEMYPKMLDFATVIQES 469
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R++P V RNYG LL E I PDG+V FF
Sbjct: 470 YSMTLARKSFLPMIVTRGSDQASISSSFQVRNEPSVVRNYGSLLTEFAKITPDGMVVFFP 529
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL E+ ++KL+ +ET D ET+LAL+ YR AC GRGA+ VA
Sbjct: 530 SYLYMESIISMWQGMGILDEVWKYKLILVETPDAQETSLALETYRTACCNGRGAILLCVA 589
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 590 RGKVSEGIDFDHQYGRTVLCIGVPFQYTESR 620
>gi|212531953|ref|XP_002146133.1| TFIIH complex helicase Rad3, putative [Talaromyces marneffei ATCC
18224]
gi|210071497|gb|EEA25586.1| TFIIH complex helicase Rad3, putative [Talaromyces marneffei ATCC
18224]
Length = 794
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/631 (48%), Positives = 427/631 (67%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M FK++++ V FPY IYPEQ+ YM +LK+ALDA GHC+LEMP+GTGKT+ LLSLI +Y
Sbjct: 1 MRFKIDELEVLFPYPKIYPEQWQYMCDLKKALDASGHCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
++ KLIYC+RT+ E++K L ELK L Y+ LG +GLSSRKNLC++
Sbjct: 61 QHHGDSR-KLIYCSRTMSEIDKALHELKALMKYRASQLGYTEDFRGLGLSSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TAS+V ++ETC + +N + ++ PGV+T DL
Sbjct: 120 VKREKSGAVVDARCRSLTASFVVQKKERGEDVETCTYHDNLDLLEPHNLIEPGVFTFGDL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +++ CPYF R M+ + NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 LRYCQEKVTCPYFTVRRMLPYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NV IE+LS+ + +L A+R + ++IE K++DA +L++EY +LVEGL
Sbjct: 240 NVAIESLSIDLTEDSLRKASRGAKNLERKIEEMKSSDAEKLQSEYTKLVEGLKATEEARD 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +SNP LP D+L EAVPGNIRRAEHF+ L+R +QYL R++ + E SF+
Sbjct: 300 EDLIMSNPVLPQDLLSEAVPGNIRRAEHFIAFLQRFIQYLMTRMKVTHTISETTPSFLQH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I+ K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY RGF +I+EP
Sbjct: 360 LRELVFIEAKPLRFCSERLTSLVRTLELMNIEDYQPLQEVAMFATLVSTYDRGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL L+C DA++A +PV +RF S+V+TSGTL+P+D++P++LNF PV+ S
Sbjct: 420 FESEAATVPNPVLHLACLDAAIAFRPVVERFSSIVVTSGTLTPLDMFPKMLNFTPVLQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F R+DP RN+G LL++ IVPDGIV FF
Sbjct: 480 YTMTLARRSFLPMIVTRGSDQSQISSSFQTRNDPSNLRNFGSLLLDFAKIVPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ + W+ GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ SVA
Sbjct: 540 SYLYMESTLHVWSGMGILDMIWNYKLILVETPDAQESSLALETYRTACCNGRGAILMSVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKVAEG+DFD YGR VI GVPFQYT S+
Sbjct: 600 RGKVAEGVDFDHQYGRAVICIGVPFQYTESR 630
>gi|46116906|ref|XP_384471.1| hypothetical protein FG04295.1 [Gibberella zeae PH-1]
Length = 761
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 300/602 (49%), Positives = 415/602 (68%), Gaps = 1/602 (0%)
Query: 30 RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89
+ LDA GHC+LEMP+GTGKT++LLSLI +Y PE KLIYC+RT+ E+EK L ELK
Sbjct: 2 QTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQYMPEKR-KLIYCSRTMSEIEKALVELKS 60
Query: 90 LHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAEN 149
L Y+ LG + +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 61 LMKYRAEELGYEEEFRGLGLTSRKNLCLHPSVKREKSGAIVDARCRSLTAGFVKEKKERG 120
Query: 150 PNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
N++ C + +N + ++P GV++ D+ +G++Q CPYF AR M+Q+ NVV++SY
Sbjct: 121 ENVDVCVYHDNLDLLEPHNLIPNGVWSFDDIIRYGEEQKQCPYFTARRMMQYCNVVIFSY 180
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQE 269
YLLDPK+A +SK+ K+ +VVFDEAHNIDNVCIE+LS + +L ATR + +
Sbjct: 181 HYLLDPKIAERVSKDFSKDCIVVFDEAHNIDNVCIESLSTDITEDSLRKATRGAQNLENK 240
Query: 270 IERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHF 329
I + + TD +L+ EY +LV+GL DA+++NPALP D+LKEAVPGNIRRAEHF
Sbjct: 241 ISQMRDTDQEQLQNEYQKLVQGLRDADEARQEDAFMANPALPEDLLKEAVPGNIRRAEHF 300
Query: 330 LHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEIT 389
+ L+R ++YL+ R++ V E P SF+A + H I++K LRFC ERL SL+ TLE+T
Sbjct: 301 IAFLKRFIEYLKTRMKVRQVISETPPSFLAHLREHTFIEKKPLRFCAERLTSLVRTLELT 360
Query: 390 DTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFD 449
+ +++ +Q + FATLV TY +GF +I+EPF+ +P+PVL +C DA++A+KPVFD
Sbjct: 361 NIEDYQPLQEVATFATLVATYEKGFLLILEPFESDTAEVPNPVLHFTCLDAAIAIKPVFD 420
Query: 450 RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFD 509
RF SV+ITSGT+SP+++YP++L+F V+ S+ M+L R PM++TRGSDQ VST F
Sbjct: 421 RFYSVIITSGTISPLEIYPKMLDFQTVIQESYAMTLARRSFMPMIVTRGSDQASVSTSFQ 480
Query: 510 MRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFI 569
+R++P V RNYG LL E I PDG+V FF SY YM+ II+ W G+L E+ ++KL+ +
Sbjct: 481 VRNEPSVVRNYGNLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGVLDEVWKYKLILV 540
Query: 570 ETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTL 629
ET D ET+LAL+ YR AC GRGAV VARGKV+EGIDFD YGR V+ GVPFQYT
Sbjct: 541 ETPDAQETSLALETYRTACCNGRGAVLLCVARGKVSEGIDFDHQYGRTVLCIGVPFQYTE 600
Query: 630 SK 631
S+
Sbjct: 601 SR 602
>gi|254578942|ref|XP_002495457.1| ZYRO0B11836p [Zygosaccharomyces rouxii]
gi|238938347|emb|CAR26524.1| ZYRO0B11836p [Zygosaccharomyces rouxii]
Length = 770
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 299/634 (47%), Positives = 435/634 (68%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM +LKR LD+ G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFFIDDLPVLFPYPKIYPEQYHYMCDLKRTLDSGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L +Y+T+ LG +GL+SRKNLC++ +
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKALVELENLMDYRTKELGYREDFRGLGLTSRKNLCLHPQ 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPN--IETCEFFENYEKAASAAVLPPGVYTLQ 178
V N VD CR+ T + +P+ +E C++ EN LP GV++ +
Sbjct: 120 VSKERNGTLVDEKCRRMTNGQAKHKQEADPDAKVELCDYHENLYNYQVEDYLPKGVFSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + +++ CPYF+ R M+ N+++YSY YLLDPK+A +S E+ K+ +V+FDEAHN
Sbjct: 180 KLIRYCEERTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDGIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L+ AT+ + I+ + DA RL+ EY++LV+ L L
Sbjct: 240 IDNVCIESLSLDLTNDVLKRATKGAYALENRIDEVRQVDARRLQDEYDKLVQDLHAADIL 299
Query: 299 PIADA-WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
+ + P L D++ EA+PGNIRRAEHF+ L+RL++YL+ R++ +V E P SF
Sbjct: 300 DQEEEPAVETPVLSQDLITEAMPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + ID+K LRFC ERL L+ TLE+T+ ++F ++ I FATL+ TY GF +I
Sbjct: 360 LQHLKQLTFIDRKPLRFCAERLSLLVRTLEVTEIEDFTALKDIATFATLISTYESGFLLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+++ +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YPR+LNF V+
Sbjct: 420 IEPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFDTVL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+L + PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V
Sbjct: 480 QKSYAMTLAKKSFLPMIVTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ II+ W GIL E+ ++KL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIISMWQTMGILDEVWKYKLILVETPDAQETSLALETYRKACSNGRGAIIL 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 600 SVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 633
>gi|242774370|ref|XP_002478428.1| TFIIH complex helicase Rad3, putative [Talaromyces stipitatus ATCC
10500]
gi|218722047|gb|EED21465.1| TFIIH complex helicase Rad3, putative [Talaromyces stipitatus ATCC
10500]
Length = 795
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 307/631 (48%), Positives = 426/631 (67%), Gaps = 1/631 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M FK++++ V FPY IYPEQ+ YM +LK+ALDA GHC+LEMP+GTGKT+ LLSLI +Y
Sbjct: 1 MRFKIDEIEVLFPYPKIYPEQWQYMCDLKKALDAGGHCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
++ KLIYC+RT+ E++K L ELK L Y+ LG +GLSSRKNLC++
Sbjct: 61 QHHGDSR-KLIYCSRTMSEIDKALHELKALMKYRALELGHTEDFRGLGLSSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TAS+V ++ETC + +N + ++ PGV+T DL
Sbjct: 120 VKREKSGTVVDARCRSLTASFVAQKKERGEDVETCTYHDNLDLLEPHNLIEPGVFTFSDL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +++ CPYF R M+ + NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 LRYCQEKVTCPYFTVRRMLPYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NV IE+LS+ + +L A+R + ++IE K +DA +L++EY +LVEGL
Sbjct: 240 NVAIESLSIDLTEDSLRKASRGAKNLERKIEEMKTSDAEKLQSEYTKLVEGLKATEEARD 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +SNP LP D+L EAVPGNIRRAEHF+ L+R +QYL R++ + E SF+
Sbjct: 300 EDLIMSNPVLPQDLLSEAVPGNIRRAEHFIAFLQRFIQYLMTRMKVTHTISETTPSFLQH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I+ K L+FC ERL SL+ TLE+ + +++ +Q + FATLV TY RGF +I+EP
Sbjct: 360 LRELVFIEAKPLKFCSERLTSLVRTLELMNIEDYQPLQEVAMFATLVSTYDRGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL L+C DA++A +PV +RF S+V+TSGTL+P+D++P++LNF PV+ S
Sbjct: 420 FESEAATVPNPVLHLACLDAAIAFRPVCERFSSIVVTSGTLTPLDMFPKMLNFTPVLQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F R+DP RNYG LL++ IVPDGIV FF
Sbjct: 480 YTMTLARRSFLPMIVTRGSDQSQISSSFQTRNDPSNLRNYGTLLLDFAKIVPDGIVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ + W+ GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ SVA
Sbjct: 540 SYLYMESTLHVWSGMGILDMIWNYKLILVETPDAQESSLALETYRTACCNGRGAILMSVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKVAEG+DFD YGR VI GVPFQYT S+
Sbjct: 600 RGKVAEGVDFDHQYGRAVICIGVPFQYTESR 630
>gi|397624872|gb|EJK67551.1| hypothetical protein THAOC_11394 [Thalassiosira oceanica]
Length = 797
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 327/694 (47%), Positives = 438/694 (63%), Gaps = 93/694 (13%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M LKR LDA GH LLEMPTGTGKT+ LLSLITSY + P KL+YCTRTV EM+ +
Sbjct: 1 MRALKRTLDAGGHSLLEMPTGTGKTVCLLSLITSYQHANP-GCGKLVYCTRTVPEMDSVM 59
Query: 85 AELKLLHNYQ-------------------------------------------------- 94
EL + Y+
Sbjct: 60 QELGNVLGYRSEMLKKEREAAEAAAEAEGGDEGMDGEGPGGDQGESRKRKRDDPPRPKSN 119
Query: 95 --TRHLGPAAKILAIGLSSRKNLC--------VNSRVLAAENRDSVDAACRKRTASWV-- 142
T +GP + G + LC +N RVL +R+ +D+ACR TASW
Sbjct: 120 NDTHRMGPITQDGGAGGNGSLALCLSSRRNMCINKRVLRESDREGIDSACRSLTASWALE 179
Query: 143 ----------------RALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQ 186
A A + C +F+ + +A A +P G+Y L+ L+ +GK
Sbjct: 180 ARKKKSGRGGPPGGSGTAAARGGDDENCCTYFDQFREAGEAISMPSGIYDLESLKEWGKG 239
Query: 187 QGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEA 246
+GWCPY+L R + ANV+ ++YQY+LDPKVA ++SKE++ ES+VVFDEAHNID+VCIEA
Sbjct: 240 RGWCPYYLTRQAINHANVLCFNYQYMLDPKVAKMVSKELEAESIVVFDEAHNIDSVCIEA 299
Query: 247 LSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIA--DAW 304
SVS+ ++LE ATR+L R++ EI R KA+DA RLR EY LV+GL +G L A +
Sbjct: 300 FSVSIHARSLEQATRSLGRLSGEINRVKASDASRLRNEYQNLVQGLVEQGLLGGASDEVA 359
Query: 305 LSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLE-----TENVEKEGPVSFVA 359
L + L +D++ EAVPGNIRRAEHF+ ++++V++L+ RL T V E P++F+
Sbjct: 360 LESSVLSNDVISEAVPGNIRRAEHFVAFMKKVVEHLKARLRTVGGPTGGVSSETPLAFLH 419
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG---FSI 416
+ G++ K L+F Y RL SL+ TL++T D+F + + D A+LV TY G F+I
Sbjct: 420 RMVTATGVEAKPLKFAYTRLSSLLRTLQVTSLDDFRSLTDVADLASLVATYAEGLPRFAI 479
Query: 417 IIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPV 476
I+EP + + +P ++L+C D+SLA+ P+F RF SV+ITSGTLSPIDLYP+LL F P
Sbjct: 480 IMEPVGQ----LSEPSIELACLDSSLAIAPLFKRFGSVIITSGTLSPIDLYPKLLQFEPC 535
Query: 477 VSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIV 536
VS SF MS R CI P+++TRGSDQLPVSTKF R D GV RNYG +LVE+ + VPDG+V
Sbjct: 536 VSESFSMSTFRPCIRPLIITRGSDQLPVSTKFQDRGDLGVVRNYGSMLVEVCAAVPDGVV 595
Query: 537 CFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVF 596
FF SY+YM+ II+ W+ GI++ + + KL+F+ET+DVVETTLALDNYR+ACD GRGA+F
Sbjct: 596 AFFTSYAYMESIISEWDGMGIMRRLAKSKLIFVETKDVVETTLALDNYRRACDSGRGAIF 655
Query: 597 FSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
S+ARGKV+EGI+FDRHYGR VI+FGVPFQYTLS
Sbjct: 656 LSIARGKVSEGINFDRHYGRAVIIFGVPFQYTLS 689
>gi|189188692|ref|XP_001930685.1| TFIIH basal transcription factor complex helicase subunit
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972291|gb|EDU39790.1| TFIIH basal transcription factor complex helicase subunit
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 772
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 304/607 (50%), Positives = 420/607 (69%), Gaps = 1/607 (0%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M +LKR LD GHC+LEMP+GTGKT++LLSLI +Y PE KLIYC+RT+ E+EK L
Sbjct: 1 MCDLKRTLDQGGHCVLEMPSGTGKTVSLLSLIVAYQQHYPEKR-KLIYCSRTMSEIEKAL 59
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
AELK L Y+T LG +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 60 AELKALMKYRTTELGYEEDFRGLGLTSRKNLCLHPSVKREKSGTVVDARCRSLTAGFVKE 119
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+E C + EN + ++PPGV+T + +G+QQ CPYF AR M+ NV
Sbjct: 120 KKERGEPVELCVYHENLDLLEPHNLIPPGVWTFDGMLKYGEQQKQCPYFTARRMMPHCNV 179
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNIDNVCIE+LS+ + L AT+ ++
Sbjct: 180 IIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNIDNVCIESLSIDLTEDVLRKATKGVN 239
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
++++I K++DA +L+ EY +LVEGL DA+++NPALP D+L EAVPGNIR
Sbjct: 240 NLDRKITEMKSSDAEKLQNEYAKLVEGLRAADEARNEDAFMANPALPDDLLTEAVPGNIR 299
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
RAEHF+ L+R ++YL+ R++ NV + P F+ + I++K LRFC ERL SL+
Sbjct: 300 RAEHFVAFLKRFIEYLKTRMKVLNVVADTPPEFLKHLRDLTFIERKPLRFCAERLTSLVR 359
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLE+T+ +++ +Q + FATLV TY GF +IIEPF+ +P+PVL L+C DA++A+
Sbjct: 360 TLELTNIEDYQPLQEVATFATLVATYETGFLLIIEPFESATATVPNPVLHLTCLDAAIAI 419
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KPVF+RF SV++TSGT+SP+D+YPR+LNF+ VV SF M+LTR PM++ RG+DQ V
Sbjct: 420 KPVFERFYSVIVTSGTMSPLDMYPRMLNFNTVVQESFTMTLTRKSFLPMIVDRGNDQNQV 479
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
+++F+ R+D V RN+G LL+E + PDG+V FF SY YM+ II+ W IL + ++
Sbjct: 480 TSQFEHRNDLQVQRNFGNLLIEFCKLTPDGVVVFFPSYLYMESIISAWQGMEILDTVWKY 539
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+ +ET D ET LAL+ +R AC+ GRGAV VARGKV+EGIDFD HYGR VI GVP
Sbjct: 540 KLILVETPDAQETALALETFRTACNNGRGAVLLCVARGKVSEGIDFDHHYGRTVICMGVP 599
Query: 625 FQYTLSK 631
+QYT S+
Sbjct: 600 YQYTESR 606
>gi|342871641|gb|EGU74151.1| hypothetical protein FOXB_15338 [Fusarium oxysporum Fo5176]
Length = 761
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 300/602 (49%), Positives = 414/602 (68%), Gaps = 1/602 (0%)
Query: 30 RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89
+ LDA GHC+LEMP+GTGKT++LLSLI +Y PE KLIYC+RT+ E+EK L ELK
Sbjct: 2 QTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQYMPEKR-KLIYCSRTMSEIEKALVELKS 60
Query: 90 LHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAEN 149
L Y+ LG + +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 61 LMKYRAEQLGYEEEFRGLGLTSRKNLCLHPSVKREKSGAIVDARCRSLTAGFVKEKKERG 120
Query: 150 PNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
N++ C + +N + ++P GV++ D+ +G++ CPYF AR M+Q+ NVV++SY
Sbjct: 121 ENVDVCVYHDNLDLLEPHNLIPNGVWSFDDMIRYGEEHKQCPYFTARRMMQYCNVVIFSY 180
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQE 269
YLLDPK+A +SK+ K+ +VVFDEAHNIDNVCIE+LS + +L ATR + +
Sbjct: 181 HYLLDPKIAERVSKDFSKDCIVVFDEAHNIDNVCIESLSTDITEDSLRKATRGAQNLENK 240
Query: 270 IERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHF 329
I + + TD +L+ EY +LV+GL DA+++NPALP D+LKEAVPGNIRRAEHF
Sbjct: 241 ISQMRDTDQQQLQNEYEKLVQGLRDADEARQEDAFMANPALPEDLLKEAVPGNIRRAEHF 300
Query: 330 LHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEIT 389
+ L+R ++YL+ R++ V E P SF+A + H I++K LRFC ERL SL+ TLE+T
Sbjct: 301 IAFLKRFIEYLKTRMKVRQVISETPPSFLAHLREHTFIEKKPLRFCAERLTSLVRTLELT 360
Query: 390 DTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFD 449
+ +++ +Q + FATLV TY +GF +I+EPF+ +P+PVL +C DA++A+KPVFD
Sbjct: 361 NIEDYQPLQEVATFATLVATYEKGFLLILEPFESDTAEVPNPVLHFTCLDAAIAIKPVFD 420
Query: 450 RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFD 509
RF SV+ITSGT+SP+++YP++L+F V+ S+ M+L R PM++TRGSDQ VST F
Sbjct: 421 RFYSVIITSGTISPLEIYPKMLDFSTVIQESYAMTLARRSFMPMIVTRGSDQASVSTSFQ 480
Query: 510 MRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFI 569
+R++P V RNYG LL E I PDG+V FF SY YM+ II+ W GIL E+ ++KL+ +
Sbjct: 481 VRNEPSVVRNYGNLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWKYKLILV 540
Query: 570 ETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTL 629
ET D ET+LAL+ YR AC GRGAV VARGKV+EGIDFD YGR V+ GVPFQYT
Sbjct: 541 ETPDAQETSLALETYRTACCNGRGAVLLCVARGKVSEGIDFDHQYGRTVLCIGVPFQYTE 600
Query: 630 SK 631
S+
Sbjct: 601 SR 602
>gi|403412410|emb|CCL99110.1| predicted protein [Fibroporia radiculosa]
Length = 759
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 305/602 (50%), Positives = 422/602 (70%), Gaps = 15/602 (2%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
MP+GTGKT++LLSLI SY P KLIYC+RTV E+EK L ELK L Y+
Sbjct: 1 MPSGTGKTVSLLSLIVSYQQFYPAKR-KLIYCSRTVPEIEKALEELKRLMVYRLSSAETE 59
Query: 102 A------KILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIET 154
+GL+SRKNLC++ V + VDA CR T S V +NP +++
Sbjct: 60 EEKEKERSFYGLGLTSRKNLCIHPEVSKEKKGKVVDARCRDLTNSAVCEKGRQNPGSVDL 119
Query: 155 CEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLD 214
C++ EN K +++PPG++TL D+ +G+ CPYFL R M+ F ++++YS+ YLLD
Sbjct: 120 CDWHENLGKLDPGSLIPPGIWTLADVLQYGRDNTICPYFLVRRMMPFVDIIIYSFHYLLD 179
Query: 215 PKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
PKVA +SKEM K+++VVFDEAHNIDNVCIE+LS+ + R LE A R++ ++ IE K
Sbjct: 180 PKVAEQVSKEMSKDAIVVFDEAHNIDNVCIESLSIDLSRPMLESAARSVGKLGDRIEEIK 239
Query: 275 ATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLR 334
TDA +L+ EY +LVEGL N DA++SNP LP D+LKEA+PGNIR+AEHF+ L+
Sbjct: 240 KTDASKLQDEYAKLVEGLQEAAN--DEDAFMSNPVLPEDLLKEAIPGNIRKAEHFVAFLK 297
Query: 335 RLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEF 394
R V+YL+ R+ +V E P+SF+ + I+++ LRFC ERL SL+ TL+++ DE+
Sbjct: 298 RFVEYLKTRMRVLHVVAETPLSFLQHLKDITYIERRPLRFCAERLQSLVRTLDLSRLDEY 357
Query: 395 LHIQTICDFATLVGTYTRG-----FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFD 449
+Q + FATLV TY +G F +I+EPF+ +P+P+ L+C D ++A+KPVF+
Sbjct: 358 ASLQKVASFATLVATYEKGAIHVGFLLILEPFETDNATVPNPIFHLTCLDPAIAIKPVFE 417
Query: 450 RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFD 509
RF +VVITSGT+SP+D+YP++L F PVV ++ M+LTR+ P+V+TRGSDQ+ +S++F+
Sbjct: 418 RFSTVVITSGTISPLDMYPKMLQFTPVVQETYAMTLTRNSFLPLVITRGSDQVAISSRFE 477
Query: 510 MRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFI 569
+R+DP V RN+G +L+E IVPDGIV FF SY YM+ I+A WND GIL E+ +HKL+F+
Sbjct: 478 VRNDPAVVRNFGSILIEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWKHKLIFV 537
Query: 570 ETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTL 629
ET D ET++AL+NYR+ACD GRGAV SVARGKV+EGIDFD +YGR VIMFGVP+QYT
Sbjct: 538 ETPDANETSIALENYRRACDNGRGAVLLSVARGKVSEGIDFDHNYGRAVIMFGVPYQYTE 597
Query: 630 SK 631
S+
Sbjct: 598 SR 599
>gi|363751190|ref|XP_003645812.1| hypothetical protein Ecym_3517 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889446|gb|AET38995.1| Hypothetical protein Ecym_3517 [Eremothecium cymbalariae
DBVPG#7215]
Length = 756
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 293/634 (46%), Positives = 433/634 (68%), Gaps = 4/634 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY YM +LK+ LD G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVIFPYPKIYPEQYQYMCDLKKTLDIGGNSILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL+ L +Y+ + L + +GL+SRKNLC++ R
Sbjct: 61 MHYPEHR-KIVYCSRTMSEIEKALVELESLMDYRAKELEYQEEFRGLGLTSRKNLCLHPR 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAEN--PNIETCEFFENYEKAASAAVLPPGVYTLQ 178
V VD CR+ T + ++ N+E CE+ EN LP GVY+ +
Sbjct: 120 VSKERKGSVVDEKCRRMTNGQAKTKKEQDIEANVELCEYHENMYNYQPEEYLPLGVYSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + + + CPYF R M+ N+++YSY YLLDP++ +S+E+ + ++V+FDEAHN
Sbjct: 180 KLIKYCEDKTICPYFTVRRMISMCNIIIYSYHYLLDPRIEERVSREISQNAIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + + L+ A+R + + ++++ + D +L+ EY LV+GL L
Sbjct: 240 IDNVCIESLSLDLTKDLLKRASRGANALGKKVDEVRKVDTMKLQQEYQDLVKGLRANDIL 299
Query: 299 -PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
P + + P L D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ +V E P SF
Sbjct: 300 DPDEEPLIPTPVLSRDVLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVLHVISETPNSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + I++K LRFC ERL L+ TLE+ + ++F ++ I FATL+ TY GF +I
Sbjct: 360 LHHLKQLTFIERKPLRFCSERLSLLVRTLEVDEIEDFNALKDIATFATLISTYESGFLLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+++ +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YP++LNF VV
Sbjct: 420 IEPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPKMLNFGTVV 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+L PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V
Sbjct: 480 QKSYSMTLAEKSFLPMIVTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ II+TW GIL E+ ++KL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIISTWQTMGILDEVWKYKLILVETPDAQETSLALETYRKACSNGRGAILM 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGK++EGIDFD+HYGR V+M G+PFQYT S+
Sbjct: 600 SVARGKISEGIDFDQHYGRTVLMIGIPFQYTESR 633
>gi|119186659|ref|XP_001243936.1| conserved hypothetical protein [Coccidioides immitis RS]
Length = 757
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 308/630 (48%), Positives = 419/630 (66%), Gaps = 39/630 (6%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+Y+ +LK+ LD GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYICDLKKTLDVGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
P + KLIYC+RT+ E+EK L EL+ L Y+ + LG A+GL+SRKNLC++
Sbjct: 61 QHYPSH-RKLIYCSRTMSEIEKALTELRELMKYREQQLGYTEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V EK+ + ++PPGV+TL L
Sbjct: 120 V--------------------------------------RREKSEPSNLVPPGVFTLDGL 141
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+ F NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNID
Sbjct: 142 IRYGEQHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 201
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A R + + +I+ K +DA +L+ EY +LVEGL
Sbjct: 202 NVCIESLSIDITEDSLRKAGRGANNLGHKIDEMKRSDAAKLQKEYEKLVEGLREADQARE 261
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++NPALP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P+SF++
Sbjct: 262 EDQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLHAISETPLSFLSH 321
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +E+ +Q I FATLV TY +GF +I+EP
Sbjct: 322 LKDLTYIERKPLRFCAERLTSLVRTLELMNIEEYRPLQEIATFATLVSTYEKGFLLILEP 381
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL +C DA++A+KPVF+RF SV+ITSGTLSP+++YP++L F V+ S
Sbjct: 382 FESDTATVPNPVLHFTCLDAAIAIKPVFERFGSVIITSGTLSPLEMYPKMLGFQTVLQES 441
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG LL+E I PDGIV FF
Sbjct: 442 YSMTLARRSFLPMIVTRGSDQAQISSAFKIRNDPGVVRNYGNLLLEFSRITPDGIVVFFP 501
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ VA
Sbjct: 502 SYLYMESIISMWQGMGILDSIWNYKLILVETPDSQESSLALETYRTACCNGRGAILLCVA 561
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
RGKV+EGIDFD HYGR V+ GVPFQYT S
Sbjct: 562 RGKVSEGIDFDHHYGRAVLCIGVPFQYTES 591
>gi|403168572|ref|XP_003889745.1| DNA excision repair protein ERCC-2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375167558|gb|EHS63460.1| DNA excision repair protein ERCC-2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 784
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 315/648 (48%), Positives = 435/648 (67%), Gaps = 18/648 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MIF ++D+ + FPYD IYPEQY+YM +LKR LD GHC+LEMP+GTGKTI+LLSLI +Y
Sbjct: 63 MIFTIDDLEILFPYDKIYPEQYAYMCDLKRTLDLGGHCVLEMPSGTGKTISLLSLIVAYQ 122
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ----------TRHLGPAAK--ILAIG 108
L PE KL+YC+RTV E+EK L ELK L Y+ T + P + L +G
Sbjct: 123 LYYPER-RKLVYCSRTVPEIEKALIELKRLMAYRAAQHRLRAGLTDNSAPTNEDDFLGVG 181
Query: 109 LSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASA 167
L+SRKNLC++ +V + VDA CR T++W +P ++ C+F E +
Sbjct: 182 LTSRKNLCIHPQVSREKKGKVVDARCRDLTSAWACEKGRADPGSVPLCDFHEKLGELEPG 241
Query: 168 AVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQK 227
++P GV+TL+++ A+G Q G CPYF R M+ A++++YS+ YLLDPKVA +SKE+
Sbjct: 242 NLIPRGVWTLEEITAYGHQHGICPYFAVRRMLAHADIIIYSFHYLLDPKVATQVSKELLP 301
Query: 228 ESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNR 287
S+VVFDEAHNIDNVCIE+LS+ + + L+ A +++ ++++I K TDA +L+ EY R
Sbjct: 302 NSIVVFDEAHNIDNVCIESLSIDLTKGMLDNAGKSIGALDEKIREIKRTDASKLQNEYER 361
Query: 288 LVEGLALRGNLPIAD---AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL 344
LV GL N ++ A L NP LP D+L+EAVPGNIRRAEHF L R V+YL+ R+
Sbjct: 362 LVRGLGQSENTFESEEEAAILGNPVLPEDLLQEAVPGNIRRAEHFTAFLTRFVEYLKTRM 421
Query: 345 ETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFA 404
+V E P SF+ + ID+K LRFC +RL SL+ TLE+TD D++ +Q + FA
Sbjct: 422 RVLHVVAETPPSFLQHVKDLTYIDRKPLRFCADRLTSLIRTLELTDLDQYNALQKVASFA 481
Query: 405 TLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSC-HDASLAVKPVFDRFQSVVITSGTLSP 463
TLV TY +GF +I+EPF+ +P+PV L P F+ F SV+I G +SP
Sbjct: 482 TLVATYEKGFLLILEPFETENATVPNPVFHSDVVFYVLLGTNPFFEGFSSVIIPWGPISP 541
Query: 464 IDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKL 523
++YP++L F V S+ M+L R+ P+ +TRGSDQ + F+ ++DP V RN+G +
Sbjct: 542 REMYPKMLGFGATVRDSYSMTLPRNFFLPLGITRGSDQGGIFWGFEFQNDPSVVRNFGTI 601
Query: 524 LVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDN 583
L+E IVPDGIV FF SY YM+ I+A W+D GILKE+ ++KL+F+ET D VET++AL+N
Sbjct: 602 LIEYCKIVPDGIVAFFPSYLYMESIVAAWHDMGILKEVWKYKLIFVETPDAVETSIALEN 661
Query: 584 YRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
YR+ACD G+GAV SVARGKV+EGIDFD +YGR VIMFG+P+QYT S+
Sbjct: 662 YRRACDNGKGAVLLSVARGKVSEGIDFDHNYGRAVIMFGIPYQYTESR 709
>gi|341038606|gb|EGS23598.1| hypothetical protein CTHT_0002930 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 780
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 298/608 (49%), Positives = 419/608 (68%), Gaps = 1/608 (0%)
Query: 24 YMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKT 83
YM +LK+ LDA G+C+LEMP+GTGKTI LLSLI +Y E+ KLIYC+RT+ E+EK
Sbjct: 7 YMCDLKKTLDAGGNCVLEMPSGTGKTITLLSLIVAYQQHYAEHR-KLIYCSRTMSEIEKA 65
Query: 84 LAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR 143
L ELK L ++ LG + +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 66 LVELKALMKFRAERLGYVEEFRGLGLTSRKNLCLHPSVKREKSGTIVDARCRSLTAGFVK 125
Query: 144 ALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFAN 203
+++ C + +N + ++P G++TL +L +G++ CPYF AR M+Q+ N
Sbjct: 126 EKKQRGEDVDVCIYHDNLDLLEPHNLIPNGIWTLDNLLKYGEEHKQCPYFTARRMLQYCN 185
Query: 204 VVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
VV+YSY YLLDPK+A +S+++ +S+VVFDEAHNIDNVCIEALS + ++L ATR
Sbjct: 186 VVIYSYHYLLDPKIAERVSRDLSSDSIVVFDEAHNIDNVCIEALSTDITEESLRRATRGA 245
Query: 264 SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNI 323
+ I K TD +L+ EY +LVEGL + D+++++P LP D+LKEAVPGNI
Sbjct: 246 QNLENRINEMKETDQQKLQDEYEKLVEGLRGNDDGTREDSFMTSPVLPQDLLKEAVPGNI 305
Query: 324 RRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLM 383
RRAEHF+ LRR ++YL+ R++ V E P SF+A + + I++K LR+C ERL SL+
Sbjct: 306 RRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLAHLKEYTFIEKKPLRWCAERLTSLV 365
Query: 384 LTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLA 443
TLE+T+ +++ +Q + FATLV TY +GF +I+EP++ +P+PVL C DA++A
Sbjct: 366 RTLELTNIEDYHALQEVATFATLVATYEKGFLLILEPYESDTAEVPNPVLHFCCLDAAIA 425
Query: 444 VKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP 503
+KPVFD+F++V+ITSGT+SP+++YP++LNF VV S+ M+L R P+++TRGSDQ
Sbjct: 426 IKPVFDKFRNVIITSGTISPLEMYPKMLNFTTVVQESYSMTLARRSFLPLIVTRGSDQAS 485
Query: 504 VSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQ 563
+ST F +R++P V RNYG LL E I PDG+V FF SY YM+ II+ W GIL E+ +
Sbjct: 486 ISTGFQVRNEPSVVRNYGNLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWK 545
Query: 564 HKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
+KL+ +ET D ET+LAL+ YR AC GRGAV VARGKV+EGIDFD YGR V+ GV
Sbjct: 546 YKLILVETPDAQETSLALETYRTACCNGRGAVLLCVARGKVSEGIDFDHQYGRTVLCIGV 605
Query: 624 PFQYTLSK 631
PFQYT S+
Sbjct: 606 PFQYTESR 613
>gi|347831219|emb|CCD46916.1| similar to DNA repair helicase RAD3 [Botryotinia fuckeliana]
Length = 770
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 300/603 (49%), Positives = 415/603 (68%), Gaps = 2/603 (0%)
Query: 30 RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89
R LDA GHC+LEMP+GTGKTI+LLSLI +Y PE+ KLIYC+RT+ E+EK LAELK
Sbjct: 2 RTLDAGGHCVLEMPSGTGKTISLLSLIVAYQQYYPEHR-KLIYCSRTMSEIEKALAELKA 60
Query: 90 LHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAEN 149
L Y+ LG +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 61 LMKYRAEQLGHQEDFRGLGLTSRKNLCLHPSVKREKSGAVVDARCRSLTAGFVKEKKERG 120
Query: 150 PNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
++ C + +N + ++P GV+TL + +G++ CPYF +R M+ F NV++YSY
Sbjct: 121 EDVPVCIYHDNLDLLEPHNLIPNGVWTLDGIMRYGEEHKQCPYFTSRRMMSFCNVIIYSY 180
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQE 269
YLLDPK+A +SKE+ K+ +VVFDEAHNIDNVCIE+LS + +L ATR +
Sbjct: 181 HYLLDPKIAERVSKELSKDCIVVFDEAHNIDNVCIESLSTDITDDSLRRATRGAMNLESR 240
Query: 270 IERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHF 329
I + +D+ +L+ EY +LVEGL DA++SNPALP D+LKEAVPGNIRRAEHF
Sbjct: 241 ISDLRDSDSEKLKDEYAKLVEGLRGADEARAEDAFMSNPALPDDLLKEAVPGNIRRAEHF 300
Query: 330 LHVLRRLVQYLRG-RLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEI 388
+ L+R ++YL+ R++ V E P SF+A + + I++K LRFC ERL SL+ TLE+
Sbjct: 301 VVFLKRFIEYLKKTRMKVRQVISETPASFLAHLKEYTYIEKKPLRFCAERLTSLVRTLEL 360
Query: 389 TDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVF 448
T+ +++ +Q + FATLV TY +GF +I+EP++ +P+PVL +C DA++A+KPVF
Sbjct: 361 TNIEDYQPLQEVATFATLVATYEKGFLLILEPYESDTAEVPNPVLHFTCLDAAIAIKPVF 420
Query: 449 DRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKF 508
+RF SV+ITSGT+SP+++YP++LNF VV S+ M+L R PM++TRGSDQ+ +S+ F
Sbjct: 421 ERFSSVIITSGTISPLEMYPKMLNFECVVQESYPMTLARRSFLPMIVTRGSDQVAISSGF 480
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
+R++P V RNYG LL EM + PDG+V FF SY YM+ II+ W GIL E+ ++KL+
Sbjct: 481 QVRNEPAVVRNYGNLLTEMSKLTPDGMVVFFPSYLYMESIISMWQGMGILDEVWKYKLIL 540
Query: 569 IETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
+ET D ET+LAL+ YR AC GRGA+ VARGKV+EGIDFD YGR V+ GVPFQYT
Sbjct: 541 VETPDAQETSLALETYRTACCNGRGAILLCVARGKVSEGIDFDHQYGRTVLCIGVPFQYT 600
Query: 629 LSK 631
S+
Sbjct: 601 ESR 603
>gi|302901601|ref|XP_003048472.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729405|gb|EEU42759.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 761
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 295/602 (49%), Positives = 414/602 (68%), Gaps = 1/602 (0%)
Query: 30 RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89
+ LDA GHC+LEMP+GTGKT++LLSLI +Y PE KLIYC+RT+ E+EK L ELK
Sbjct: 2 QTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQYMPEKR-KLIYCSRTMSEIEKALVELKS 60
Query: 90 LHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAEN 149
L Y+ LG + +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 61 LMKYRAEELGYEEEFRGLGLTSRKNLCLHPSVKREKSGSVVDARCRSLTAGFVKEKKDRG 120
Query: 150 PNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
N++ C + +N + ++P GV++ D+ +G++ CPYF AR M+Q+ NVV++SY
Sbjct: 121 ENVDVCVYHDNLDLLEPHNLIPNGVWSFDDIIRYGEEHKQCPYFTARRMMQYCNVVIFSY 180
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQE 269
YLLDPK+A +SK+ K+ +VVFDEAHNIDNVCIE+LS + +L ATR +
Sbjct: 181 HYLLDPKIAERVSKDFSKDCIVVFDEAHNIDNVCIESLSTDITEDSLRKATRGAQNLENR 240
Query: 270 IERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHF 329
I + + TD +L+ EY +LV+GL DA+++NPALP+D+L+EAVPGNIRRAEHF
Sbjct: 241 IAQMRDTDQEQLQNEYQKLVQGLRDAEEARQEDAFMANPALPADLLQEAVPGNIRRAEHF 300
Query: 330 LHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEIT 389
+ L+R ++YL+ R++ V E P SF+A + H I++K LRFC ERL SL+ TLE+T
Sbjct: 301 VAFLKRFIEYLKTRMKVRQVISETPPSFLAHLKEHTFIEKKPLRFCAERLTSLVRTLELT 360
Query: 390 DTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFD 449
+ +++ +Q + FATLV TY +GF +I+EP++ +P+P+L +C DA++A++PVF+
Sbjct: 361 NIEDYQPLQEVATFATLVSTYEKGFLLILEPYESDTAEVPNPILHFTCLDAAIAIRPVFE 420
Query: 450 RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFD 509
RF SV+ITSGT+SP+++YP++L+F V+ S+ M+L R PM++TRGSDQ VST F
Sbjct: 421 RFYSVIITSGTISPLEIYPKMLDFSTVIQESYSMTLARRSFLPMIVTRGSDQASVSTSFQ 480
Query: 510 MRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFI 569
+R++P V RNYG LL E I PDG+V FF SY YM+ II+ W GIL E+ ++KL+ +
Sbjct: 481 VRNEPSVVRNYGNLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWKYKLILV 540
Query: 570 ETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTL 629
ET D ET+LAL+ YR AC GRGAV VARGKV+EGIDFD YGR V+ GVPFQYT
Sbjct: 541 ETPDAQETSLALETYRTACCNGRGAVLLCVARGKVSEGIDFDHQYGRTVLCIGVPFQYTE 600
Query: 630 SK 631
S+
Sbjct: 601 SR 602
>gi|358399042|gb|EHK48385.1| hypothetical protein TRIATDRAFT_214371 [Trichoderma atroviride IMI
206040]
Length = 769
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 293/607 (48%), Positives = 416/607 (68%), Gaps = 1/607 (0%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y PE KLIYC+RT+ E+EK L
Sbjct: 1 MCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQHMPEKR-KLIYCSRTMSEIEKAL 59
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
EL+ L Y+ LG + +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 60 VELQSLMKYRAEELGYEEEFRGLGLTSRKNLCLHPSVKREKSGSVVDARCRSLTAGFVKE 119
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
N++ C + +N + ++P GV++ L +G++ CPYF AR M+Q+ NV
Sbjct: 120 KKDRGENVDVCVYHDNLDLLEPHNLIPNGVWSFDALLKYGEEHKQCPYFTARRMMQYCNV 179
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
V++SY YLLDPK+A ++K+ K+ +VVFDEAHNIDNVCIE+LS + ++ ATR+
Sbjct: 180 VIFSYHYLLDPKIAERVTKDFSKDCIVVFDEAHNIDNVCIESLSTDITEDSIRKATRSAQ 239
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + I + TD +L+ EY +LV+GL DA+++NPALP D+LKEAVPGNIR
Sbjct: 240 HLERRIAEMRETDQEQLQNEYEKLVQGLREADESRQEDAFMANPALPDDLLKEAVPGNIR 299
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
RAEHF+ L+R ++YL+ R++ V E P+SF+A + H I++K LRFC ERL SL+
Sbjct: 300 RAEHFVAFLKRFLEYLKTRMKVRQVISETPLSFLAHLKEHTFIERKPLRFCAERLTSLVR 359
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLE+ + +++ +Q + FATLV TY +GF +I+EP++ +P+P L +C DA++A+
Sbjct: 360 TLELMNIEDYQALQEVATFATLVATYEKGFLLILEPYESDTAEVPNPTLHFTCLDAAIAI 419
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
+PVF+RF SV+ITSGT+SP+++YP++L+F V+ S+ M+L R PM++TRGSDQ V
Sbjct: 420 RPVFERFYSVIITSGTISPLEMYPKMLDFATVIQESYSMTLARRSFLPMIVTRGSDQASV 479
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+ F +R++P V RNYG LL E I PDG+V FF SY YM+ II+ W GIL E+ ++
Sbjct: 480 SSSFQVRNEPSVVRNYGNLLTEFAKITPDGLVVFFPSYLYMESIISMWQGMGILDEVWKY 539
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+ +ET D ET+LAL+ YR AC GRGA+ VARGKV+EGIDFD YGR V+ GVP
Sbjct: 540 KLILVETPDAQETSLALETYRTACCNGRGAILLCVARGKVSEGIDFDHQYGRTVLCIGVP 599
Query: 625 FQYTLSK 631
FQYT S+
Sbjct: 600 FQYTESR 606
>gi|326480373|gb|EGE04383.1| DNA repair helicase RAD3 [Trichophyton equinum CBS 127.97]
Length = 770
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 294/631 (46%), Positives = 429/631 (67%), Gaps = 20/631 (3%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKTI LL+LI +Y
Sbjct: 1 MEFFIDDLPILFPYPRIYPEQYAYMCDLKKVLDAGGHCVLEMPSGTGKTITLLALIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK L+EL+ L Y+++ LG A+GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALSELRALMKYRSQKLGVVEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +++ + ++E C + EN + + ++PPGV+TL L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+ + NV++YSY YLLDPK+A +SKE+ ++S++VFDEAHNID
Sbjct: 180 LKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A+R + + ++I+ K++DA +L++EY +LVEGL
Sbjct: 240 NVCIESLSIDLTEDSLRKASRGANNLERKIDDMKSSDADKLQSEYQKLVEGLREADEARE 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+ ++NP LP D+LKE+VPGNIRRAEHF+ L+R ++YL+ R++ + E P+SF++
Sbjct: 300 EEQLMANPVLPDDLLKESVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFLSH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATL TY GF +I+EP
Sbjct: 360 LKDLTFIERKPLRFCAERLTSLVRTLELVNIEDYQPLQEVATFATLAATYEIGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++L F + S
Sbjct: 420 FESDTATVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFDAALQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG +L+E I PDG+V FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNMLLEFCRITPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL + +KL+ +ET D E++LAL+ Y
Sbjct: 540 SYLYMESIISMWQGMGILDSVWNYKLILVETPDSQESSLALETY---------------- 583
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
++EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 584 ---LSEGIDFDHHYGRTVLCIGVPFQYTESR 611
>gi|405117928|gb|AFR92703.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii H99]
Length = 773
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 301/632 (47%), Positives = 421/632 (66%), Gaps = 28/632 (4%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F L D+ V FPYD +YPEQYSYM +LK LDA +
Sbjct: 1 MKFMLGDLPVLFPYDRLYPEQYSYMADLKTTLDAGFY----------------------- 37
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
N KLIYC+RTV E+EK LAELK L Y+ +GL+SR+NLC++
Sbjct: 38 ----PNKRKLIYCSRTVPEIEKALAELKRLMVYRAEMGANDGDFRGLGLTSRRNLCLHPE 93
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPGVYTLQD 179
V + VD+ CR T+++ +P ++ C F E ++PPGVYTL D
Sbjct: 94 VSKEKKGKVVDSRCRDLTSAFACEKGRTDPGSVPLCSFHEELNNYEPGNLIPPGVYTLDD 153
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
++ +G+++G CPYF R M+ F +VV+YS+ YLLDPKVA +S EM KES+V+FDEAHNI
Sbjct: 154 VKKYGQEKGVCPYFTIRRMLPFLDVVIYSFHYLLDPKVAEQVSAEMSKESIVIFDEAHNI 213
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
DNVCIE+LS+ + R L+ A R++++++ +I K TDA +L EY +LVEGL
Sbjct: 214 DNVCIESLSIDLTRPMLDSAARSVNKLSDKIAEIKETDAKKLEDEYAKLVEGLQEANERA 273
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
+ L +P L D++ EAVPGNIR+AEHF+ L+R ++YL+ R+ +V E P SF+A
Sbjct: 274 EDEDMLVSPVLSKDMVDEAVPGNIRKAEHFIAFLKRFIEYLKTRMRVLHVVAETPQSFLA 333
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
+ I+Q+ L+F ERL SL+ TLE+T+ +E +Q + F TLV TY +GF +I+E
Sbjct: 334 HLKEITYIEQRPLKFASERLTSLVRTLELTNLEEHSALQKVAGFGTLVATYEKGFLLILE 393
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
P++ +P+P+ +C D SLA+ PVFDRF SVVITSGT+SP+D+YP++L F PV+ +
Sbjct: 394 PYETEHATVPNPIFHFTCLDPSLAIAPVFDRFASVVITSGTISPLDMYPKMLQFQPVMEQ 453
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
S+ M+LTR+ PMV+TRGSDQ+P+S++F++R+DP V RN+G +L+EM VPDG+V FF
Sbjct: 454 SYPMTLTRNAFLPMVITRGSDQVPISSRFEVRNDPAVVRNFGSILIEMARTVPDGVVAFF 513
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599
SY YM+ I++ W D GIL E+ +HKL+F+ET D +ET++AL NYR+AC+ GRGAV SV
Sbjct: 514 PSYLYMESIVSAWYDMGILSEVWKHKLLFVETPDAMETSIALRNYREACNNGRGAVLLSV 573
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ARGKV+EGIDFD +YGR VIMFG+P+QYT S+
Sbjct: 574 ARGKVSEGIDFDHNYGRAVIMFGIPYQYTESR 605
>gi|440472803|gb|ELQ41640.1| DNA repair helicase RAD3 [Magnaporthe oryzae Y34]
gi|440484308|gb|ELQ64395.1| DNA repair helicase RAD3 [Magnaporthe oryzae P131]
Length = 805
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/650 (46%), Positives = 424/650 (65%), Gaps = 31/650 (4%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M+F ++D+ V FPY IYPE LD G+C+LEMP+GTGKT LLSLI +Y
Sbjct: 1 MLFYIDDLPVIFPYPRIYPE----------TLDVGGNCVLEMPSGTGKTATLLSLIVAYQ 50
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAELK L Y+ LG +GL+SRKNLC++
Sbjct: 51 QHYPEHR-KLIYCSRTMSEIEKALAELKNLMKYRAGELGKEEDFRGLGLTSRKNLCLHPS 109
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ + ++E C + +N + ++P GV+TL+ L
Sbjct: 110 VKREKSGAIVDARCRGLTAGFVKEKKEKGEDVELCVYHDNLDLLEPHNLIPNGVWTLEGL 169
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF +R M+Q+ NV++YSY YLLDPK+A +SKE+ ++S++VFDEAHNID
Sbjct: 170 LRYGEEHKQCPYFTSRRMMQYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 229
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS + +L A+R + + I + TD +L EY +LVEGL
Sbjct: 230 NVCIESLSTDITEDSLRKASRGAMNLEKRINEMRETDQNQLEDEYRKLVEGLREADEARQ 289
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRG------------------ 342
DA++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+
Sbjct: 290 EDAFMSNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKASNSLSSQIYVYFQLTLLI 349
Query: 343 --RLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTI 400
R++ V E P SF+A + + I++K LRFC ERL SL+ TLE+T+ ++F +Q +
Sbjct: 350 QTRMKVLEVISETPPSFLAHLKEYTFIEKKPLRFCAERLTSLVRTLELTNIEDFQPLQEV 409
Query: 401 CDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGT 460
FATLV TY +GF +++EP++ IP+PVL +C DA++A+KPVF+RF++V+ITSGT
Sbjct: 410 ATFATLVATYDKGFLLLLEPYESEKSQIPNPVLHFTCLDAAIAIKPVFERFKTVIITSGT 469
Query: 461 LSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNY 520
LSP+++YP++L F VV S+ M+L R PM++T+GSDQ +S+ F +R+DP V RNY
Sbjct: 470 LSPLEMYPKMLGFDAVVQESYAMTLARRSFLPMIVTKGSDQASISSSFAVRNDPAVVRNY 529
Query: 521 GKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA 580
G+LL E I PDG+V FF SY YM+ II+ W IL EI ++KL+ +ET D ET +A
Sbjct: 530 GQLLTEFAKITPDGMVVFFPSYFYMESIISMWQGMKILDEIWKYKLILVETPDAQETAVA 589
Query: 581 LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
L+ YR AC G GA+ VARGKV+EGIDFD YGR V+ GVPFQYT S
Sbjct: 590 LETYRTACCNGTGAIMLCVARGKVSEGIDFDHQYGRTVLCIGVPFQYTES 639
>gi|358380117|gb|EHK17796.1| hypothetical protein TRIVIDRAFT_214193 [Trichoderma virens Gv29-8]
Length = 763
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 291/602 (48%), Positives = 412/602 (68%), Gaps = 1/602 (0%)
Query: 30 RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89
+ LDA GHC+LEMP+GTGKT++LLSLI +Y PE KLIYC+RT+ E+EK L EL+
Sbjct: 2 QTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQHMPEKR-KLIYCSRTMSEIEKALVELQS 60
Query: 90 LHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAEN 149
L Y+ LG + +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 61 LMKYRAEQLGYEEEFRGLGLTSRKNLCLHPSVKREKSGSIVDARCRSLTAGFVKEKKDRG 120
Query: 150 PNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
N++ C + +N + ++P GV++ L +G++ CPYF AR M+++ NVV++SY
Sbjct: 121 ENVDVCTYHDNLDLLEPHNLIPNGVWSFDALLKYGEEHKQCPYFTARRMMEYCNVVIFSY 180
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQE 269
YLLDPK+A +SK+ K+ +VVFDEAHNIDNVCIE+LS + ++ ATR+ + +
Sbjct: 181 HYLLDPKIAERVSKDFSKDCIVVFDEAHNIDNVCIESLSTDITEDSIRKATRSAQHLERR 240
Query: 270 IERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHF 329
I + TD +L+ EY +LV+GL DA+++NPALP D+LKEAVPGNIRRAEHF
Sbjct: 241 IAEMRETDQEQLQNEYEKLVQGLREADESRQEDAFMANPALPDDLLKEAVPGNIRRAEHF 300
Query: 330 LHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEIT 389
+ L+R ++YL+ R++ V E P SF+A + H I++K LRFC ERL SL+ TLE+T
Sbjct: 301 VAFLKRFLEYLKTRMKVRQVISETPPSFLAHLKEHTFIEKKPLRFCAERLTSLVRTLELT 360
Query: 390 DTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFD 449
+ +++ +Q + FATLV TY +GF +I+EP++ +P+P L +C DA++A++PVF+
Sbjct: 361 NIEDYQALQEVATFATLVATYEKGFLLILEPYESDTAEVPNPTLHFTCLDAAIAIRPVFE 420
Query: 450 RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFD 509
RF SV+ITSGT+SP+++YP++L+F V+ S+ M+L R PM++TRGSDQ VS+ F
Sbjct: 421 RFYSVIITSGTISPLEMYPKMLDFSTVIQESYSMTLARRSFLPMIVTRGSDQASVSSSFQ 480
Query: 510 MRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFI 569
+R++P V RNYG LL E I PDG+V FF SY YM+ II+ W GIL E+ ++KL+ +
Sbjct: 481 VRNEPSVVRNYGNLLTEFARITPDGMVVFFPSYLYMESIISMWQGMGILDEVWKYKLILV 540
Query: 570 ETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTL 629
ET D ET+LAL+ YR AC GRGA+ VARGKV+EGIDFD YGR V+ GVPFQYT
Sbjct: 541 ETPDAQETSLALETYRTACCNGRGAILLCVARGKVSEGIDFDHQYGRTVLCIGVPFQYTE 600
Query: 630 SK 631
S+
Sbjct: 601 SR 602
>gi|406859189|gb|EKD12258.1| tfiih complex helicase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 786
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 299/607 (49%), Positives = 416/607 (68%), Gaps = 4/607 (0%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M +LKR LDA GHC+LEMP+GTGKT++LLSLI +Y PE+ KLIYC+RT+ E+EK L
Sbjct: 1 MCDLKRTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQYYPEHR-KLIYCSRTMSEIEKAL 59
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
EL+ L Y+ LG + +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 60 FELEALMKYRAEMLGHEEEFRGLGLTSRKNLCLHPSVKREKSGTVVDARCRSLTAGFVKE 119
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
++ C + +N + ++P GV+T + + +G++ CPYF +R M+ F NV
Sbjct: 120 KKERGEDVPVCIYHDNLDLLEPHDLIPNGVWTFEGILKYGEEHKQCPYFTSRRMMSFCNV 179
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNIDNVCIE+LS + +L ATR
Sbjct: 180 IIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNIDNVCIESLSTDITEDSLRKATRGAQ 239
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ +I K +DA +L++EY +LVEGL + DA++SNPALP D+LKEAVPGNIR
Sbjct: 240 NLEIKITDMKNSDADKLKSEYAKLVEGLRDADDARQEDAFMSNPALPDDLLKEAVPGNIR 299
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
RAEHF+ L+Q R++ V E P SF+A + + I++K LRFC ERL SL+
Sbjct: 300 RAEHFITSESDLLQ---TRMKVRQVISETPPSFLAHLKEYTFIEKKPLRFCAERLTSLVR 356
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLE+T+ +++ +Q + FATLV TY +GF +I+EP++ +P+PVL +C DA++A+
Sbjct: 357 TLELTNIEDYQPLQEVATFATLVATYEKGFVLILEPYESDTAEVPNPVLHFACLDAAIAI 416
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KPVFDRF SV+ITSGT+SP+++YP++L F VV S+ M+L R PM++TRGSDQ+ +
Sbjct: 417 KPVFDRFSSVIITSGTISPLEMYPKMLGFTAVVQESYTMTLARRSFLPMIVTRGSDQVAI 476
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+ F +R++P V RNYG LL E + PDG+V FF SY YM+ II+ W GIL E+ ++
Sbjct: 477 SSGFQVRNEPSVVRNYGHLLTEFSKLTPDGMVVFFPSYLYMESIISMWQGMGILDEVWKN 536
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+ +ET D ET+LALD YR AC+ GRGA+ VARGKV+EGIDFD YGR V+ GVP
Sbjct: 537 KLILVETPDAQETSLALDTYRTACNNGRGAILLCVARGKVSEGIDFDNQYGRTVLCIGVP 596
Query: 625 FQYTLSK 631
FQYT S+
Sbjct: 597 FQYTESR 603
>gi|154296465|ref|XP_001548663.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 764
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 299/603 (49%), Positives = 413/603 (68%), Gaps = 8/603 (1%)
Query: 30 RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89
R LDA GHC+LEMP+GTGKTI+LLSLI +Y PE+ KLIYC+RT+ E+EK LAELK
Sbjct: 2 RTLDAGGHCVLEMPSGTGKTISLLSLIVAYQQYYPEHR-KLIYCSRTMSEIEKALAELKA 60
Query: 90 LHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAEN 149
L Y+ LG +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 61 LMKYRAEQLGHQEDFRGLGLTSRKNLCLHPSVKREKSGAVVDARCRSLTAGFVKEKKERG 120
Query: 150 PNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
++ + E + ++P GV+TL + +G++ CPYF +R M+ F NV++YSY
Sbjct: 121 EDVPNLDLLEPHN------LIPNGVWTLDGIMRYGEEHKQCPYFTSRRMMSFCNVIIYSY 174
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQE 269
YLLDPK+A +SKE+ K+ +VVFDEAHNIDNVCIE+LS + +L ATR +
Sbjct: 175 HYLLDPKIAERVSKELSKDCIVVFDEAHNIDNVCIESLSTDITDDSLRRATRGAMNLESR 234
Query: 270 IERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHF 329
I + +D+ +L+ EY +LVEGL DA++SNPALP D+LKEAVPGNIRRAEHF
Sbjct: 235 ISDLRDSDSEKLKDEYAKLVEGLRGADEARAEDAFMSNPALPDDLLKEAVPGNIRRAEHF 294
Query: 330 LHVLRRLVQYLRG-RLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEI 388
+ L+R ++YL+ R++ V E P SF+A + + I++K LRFC ERL SL+ TLE+
Sbjct: 295 VVFLKRFIEYLKKTRMKVRQVISETPASFLAHLKEYTYIEKKPLRFCAERLTSLVRTLEL 354
Query: 389 TDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVF 448
T+ +++ +Q + FATLV TY +GF +I+EP++ +P+PVL +C DA++A+KPVF
Sbjct: 355 TNIEDYQPLQEVATFATLVATYEKGFLLILEPYESDTAEVPNPVLHFTCLDAAIAIKPVF 414
Query: 449 DRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKF 508
+RF SV+ITSGT+SP+++YP++LNF VV S+ M+L R PM++TRGSDQ+ +S+ F
Sbjct: 415 ERFSSVIITSGTISPLEMYPKMLNFECVVQESYPMTLARRSFLPMIVTRGSDQVAISSGF 474
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
+R++P V RNYG LL EM + PDG+V FF SY YM+ II+ W GIL E+ ++KL+
Sbjct: 475 QVRNEPAVVRNYGNLLTEMSKLTPDGMVVFFPSYLYMESIISMWQGMGILDEVWKYKLIL 534
Query: 569 IETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
+ET D ET+LAL+ YR AC GRGA+ VARGKV+EGIDFD YGR V+ GVPFQYT
Sbjct: 535 VETPDAQETSLALETYRTACCNGRGAILLCVARGKVSEGIDFDHQYGRTVLCIGVPFQYT 594
Query: 629 LSK 631
S+
Sbjct: 595 ESR 597
>gi|341891975|gb|EGT47910.1| hypothetical protein CAEBREN_01520 [Caenorhabditis brenneri]
Length = 714
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 295/591 (49%), Positives = 423/591 (71%), Gaps = 8/591 (1%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG-P 100
MP+GTGKT++LLSL+ +Y++S P+ KL+YC+RT+ E+EK + E+++L++Y + G P
Sbjct: 1 MPSGTGKTVSLLSLVLAYMISYPDRLDKLVYCSRTIPEIEKCVEEMRVLYDYWEKETGMP 60
Query: 101 AAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFEN 160
AKI + +S+RKNLC+N +V A ++VD+AC+K T+S VRA E+P+IE C+FFEN
Sbjct: 61 VAKI-TVAMSARKNLCINEKVAALRFGNTVDSACQKLTSSSVRAKKQEDPSIEGCDFFEN 119
Query: 161 YEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGI 220
+E A+ + GV+ L++LR G+++ CPYF AR+ + A++VVYSY Y+LDPK+A +
Sbjct: 120 FE--ANGFPMQNGVWNLENLRTLGREKKICPYFTARNAINRAHIVVYSYHYILDPKIAEL 177
Query: 221 ISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGR 280
+SK+ ++SVVVFDEAHNIDNVCIE++SV++ ++ + A + L + + R K ++ +
Sbjct: 178 VSKDFSRKSVVVFDEAHNIDNVCIESMSVAISQKNADRALQELQNLEGVVGRMKTANSEK 237
Query: 281 LRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYL 340
L+ EY+RLVEGL D L+NP +P DILKEAVPGNIR+A HFL L+R V+Y+
Sbjct: 238 LKTEYDRLVEGLRKAERERANDERLANPCIPDDILKEAVPGNIRQANHFLLFLKRFVEYV 297
Query: 341 RGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTI 400
R RL T V E P SF+ I I+++ +RFC ERL +L+ TLEITD + + +
Sbjct: 298 RHRLRTHQVLIESPASFMKDIQERMCIERRPMRFCAERLSNLVKTLEITDNGDVWALSQV 357
Query: 401 CDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGT 460
TLV TY+RGFS+IIEP D +L LSCHDAS+A++PV R QSV+ITSGT
Sbjct: 358 TTLCTLVSTYSRGFSVIIEPQDGSQM----AMLTLSCHDASIAIRPVLKRHQSVIITSGT 413
Query: 461 LSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNY 520
LSP+++YP++L+F P V SF M+L R C+ P+V+ RG+DQ+ ++++F+ R+D V RNY
Sbjct: 414 LSPLEMYPKILDFDPAVVASFTMTLARPCLAPLVVARGNDQVAMTSRFEQRADVAVIRNY 473
Query: 521 GKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA 580
G L++EM S+VPDG+V FF SY YM+ +I W + I+ E+M++KL+FIET D +ET+ A
Sbjct: 474 GNLVLEMASLVPDGMVVFFTSYLYMENVIGVWYEQHIIDELMKYKLLFIETNDALETSAA 533
Query: 581 LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
L+ Y +ACD GRGAV FSVARGKV+EGIDF H GR VIM G+P+ YT S+
Sbjct: 534 LEKYVEACDSGRGAVLFSVARGKVSEGIDFSHHLGRCVIMLGIPYMYTESR 584
>gi|44889982|emb|CAF32100.1| DNA repair helicase, putative [Aspergillus fumigatus]
Length = 767
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 306/625 (48%), Positives = 420/625 (67%), Gaps = 28/625 (4%)
Query: 7 DVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPEN 66
D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT++LLSLI +Y PE+
Sbjct: 7 DLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQQHYPEH 66
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
KLIYC+RT+ E+EK LAELK L ++++ LG A+GL+SRKNLC++ V ++
Sbjct: 67 R-KLIYCSRTMSEIEKALAELKELMKFRSQQLGYTEDFRALGLTSRKNLCLHPSVKREKS 125
Query: 127 RDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQ 186
VDA CR TA +V+ ++E C + E A VL R Q
Sbjct: 126 GTVVDARCRSLTAGFVKEKKERGEDVELCIYHE-----VCADVL----------RKLWVQ 170
Query: 187 QGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEA 246
+C NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNIDNVCIEA
Sbjct: 171 MPYC------------NVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNIDNVCIEA 218
Query: 247 LSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLS 306
LS+ + +L ATR + + ++I K++DA +L+ EY++LVEGL D +++
Sbjct: 219 LSIDITEDSLRKATRGANNLERKISEMKSSDAEKLQNEYSKLVEGLREAEQARDEDQFIA 278
Query: 307 NPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAG 366
NP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P SF+ +
Sbjct: 279 NPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFLTHVKDLTF 338
Query: 367 IDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMP 426
I++K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY +GF +I+EPF+
Sbjct: 339 IERKPLRFCAERLTSLVRTLELINIEDYQPLQEVATFATLVSTYDKGFLLILEPFESETA 398
Query: 427 HIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT 486
+P+PVL +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++L F V+ S+ M+L
Sbjct: 399 TVPNPVLHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFPTVLQESYTMTLA 458
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
R PM++TRGSDQ +S+ F +R+DPGV RNYG +++E I PDGIV FF SY YM+
Sbjct: 459 RRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNIVLEFSRITPDGIVVFFPSYLYME 518
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAE 606
II+ W GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ F VARGKV+E
Sbjct: 519 SIISMWQGMGILDSIWNYKLILVETPDAQESSLALETYRTACCNGRGAILFCVARGKVSE 578
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSK 631
GIDFD HYGR V+ GVPFQYT S+
Sbjct: 579 GIDFDHHYGRAVLCIGVPFQYTESR 603
>gi|345562800|gb|EGX45813.1| hypothetical protein AOL_s00117g18 [Arthrobotrys oligospora ATCC
24927]
Length = 749
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 298/590 (50%), Positives = 410/590 (69%), Gaps = 1/590 (0%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
MP+GTGKT++LLSLI +Y PE+ KLIYC+RT+ E+EK L ELK L Y+ + LG
Sbjct: 1 MPSGTGKTVSLLSLIVAYQQHYPEHR-KLIYCSRTMSEIEKALYELKALMEYRAKELGQV 59
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
+GL+SRKNLC++ V + VDA CR TA +V+ + +E+C + +N
Sbjct: 60 EDFRGLGLTSRKNLCLHPSVKREKKGTVVDARCRSLTAGFVKEKKEKGEEVESCIYHDNL 119
Query: 162 EKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
+ ++PPGVYTL + +G+ Q CPYF AR M+ + NV++YSY YLLDPK+A +
Sbjct: 120 DLLEPHNLIPPGVYTLDGMLKYGEDQKQCPYFTARRMMPYCNVIIYSYHYLLDPKIAERV 179
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRL 281
SKE+ K+ +VVFDEAHNIDNVCIE+LS+ + +L A R + + ++IE K+TDA +L
Sbjct: 180 SKELSKDCIVVFDEAHNIDNVCIESLSIDITEDSLRKAARGCTSLEKKIEDMKSTDADKL 239
Query: 282 RAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLR 341
+ EY +LVEGL D++++NP LP D+LKEAVPGNIRRAEHF+ L+R V+YL+
Sbjct: 240 QQEYAKLVEGLQDASTAREEDSFMANPVLPDDLLKEAVPGNIRRAEHFVAFLKRFVEYLK 299
Query: 342 GRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTIC 401
R++ +V E P SF+ + I++K LRFC ERL SL+ TLE+++ +EF +Q +
Sbjct: 300 TRMKVLHVISETPPSFLQHLKDLTFIEKKPLRFCAERLTSLIRTLELSNVEEFQALQEVA 359
Query: 402 DFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTL 461
FATLV TY +GF +I+EPF+ +P+P+ +C DAS+A+KPVFDRF SVVITSGT+
Sbjct: 360 TFATLVATYEKGFLLILEPFESETATVPNPIFHFTCLDASIAIKPVFDRFWSVVITSGTI 419
Query: 462 SPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYG 521
SP+++YP++L F VV S+ M+L R PMV+TRGSDQ+ +S++F++R+DP V RNYG
Sbjct: 420 SPLEMYPKMLQFDCVVQESYAMTLARRSFLPMVVTRGSDQVAISSRFEIRNDPSVVRNYG 479
Query: 522 KLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLAL 581
L++E I PDG+V FF SY YM+ II+ W GIL E+ ++KL+ +ET D ET+LAL
Sbjct: 480 NLMIEFSKITPDGLVIFFPSYLYMESIISMWQGMGILDEVWKYKLILVETPDSQETSLAL 539
Query: 582 DNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+ YR AC GRGAV VARGKV+EGIDFD YGR VI GVPFQYT S+
Sbjct: 540 ETYRTACCNGRGAVLLCVARGKVSEGIDFDHQYGRTVICIGVPFQYTESR 589
>gi|313247490|emb|CBY15705.1| unnamed protein product [Oikopleura dioica]
Length = 760
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 303/637 (47%), Positives = 436/637 (68%), Gaps = 14/637 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +E + V FP+D +YPEQ +YM ELK +++ +GH L+EMP GTGKT+ +LS + +Y
Sbjct: 1 MHLDIEGIPVLFPFDYVYPEQLAYMRELKYSIENRGHALIEMPCGTGKTVTILSFLLAYK 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY---QTRHLGPAAKILAIGLSSRKNLCV 117
+ P + K+IYCTRTV E+ K + EL+ L + +HL IL++ LSSR+NLC+
Sbjct: 61 KAHPASLEKIIYCTRTVPELTKVVEELRDLVKFYADNDQHL----DILSMSLSSRQNLCI 116
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIE--TCEFFENYEKAASAAVLPPGVY 175
NS V + R VD CR+RTA++ R A +PN E +C +FEN E + +A LP +Y
Sbjct: 117 NSEVTSCGGRIEVDTECRRRTATFARRNAKMSPNAENPSCSYFENLENSTLSAKLPRTIY 176
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
L+D++ FGK++ CPYF+AR + A+VV+YSY YLLDPK++ ++SK + + S+VVFDE
Sbjct: 177 NLEDIKEFGKEETICPYFMAREAINLADVVIYSYNYLLDPKISSVVSKSLPRNSIVVFDE 236
Query: 236 AHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALR 295
AHNID+VCI++LSV + ++T+E A+ L ++ ++ F + L EY+RLV GL R
Sbjct: 237 AHNIDSVCIKSLSVKITKRTIERASDGLEKLTARVDEFSISKKEELEDEYDRLVRGL--R 294
Query: 296 GNLPIADAWLSNPA-LPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGP 354
DA L P LP D+L A+PG+IR+A F ++RL++Y RL + +E P
Sbjct: 295 EARQNEDAGLGGPPILPDDVLTTAIPGSIRKAPIFCKWVKRLLEYCGHRLRIQQAIQESP 354
Query: 355 VSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGF 414
+SF+ I ID+K+LR ERL +L++TLE+ D + I + A L TYT GF
Sbjct: 355 LSFLRDIEERVCIDRKSLRIAGERLQNLIITLEMVDLSGLKEVNDIINMAALAATYTEGF 414
Query: 415 SIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFH 474
+I+ E DER IPDP +QL+C DASL ++P+F ++QSV+ITSGTLSPI++YPRLL+F
Sbjct: 415 AILFEAIDER--GIPDPRIQLACLDASLVMRPIFRKYQSVLITSGTLSPIEMYPRLLDFQ 472
Query: 475 PVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDG 534
PVV S +S+ R ICPM++ RG+DQ+ +S+KFD R DP V RNYG LLVE+ +VPDG
Sbjct: 473 PVVMTSLALSMARGAICPMIVARGNDQVSLSSKFDEREDPSVLRNYGNLLVEICGVVPDG 532
Query: 535 IVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGA 594
+V FF SYSY++ +++ WN++GI++ I ++K++F E+ D+ ET+ AL YR+ACD GRGA
Sbjct: 533 VVVFFTSYSYLENVVSMWNETGIIEGIQKNKIIFCESSDITETSQALSRYREACDEGRGA 592
Query: 595 VFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
V SVARGKV+EGIDF HYGR V++ G+PF +T S+
Sbjct: 593 VLLSVARGKVSEGIDFSGHYGRAVLVLGIPFIFTQSR 629
>gi|302418904|ref|XP_003007283.1| DNA repair helicase RAD3 [Verticillium albo-atrum VaMs.102]
gi|261354885|gb|EEY17313.1| DNA repair helicase RAD3 [Verticillium albo-atrum VaMs.102]
Length = 756
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 295/597 (49%), Positives = 406/597 (68%), Gaps = 8/597 (1%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
MP+GTGKT++LLSLI +Y PE+ KLIYC+RT+ E+EK LAEL+ L Y+T LG
Sbjct: 1 MPSGTGKTVSLLSLIVAYQQHYPEHR-KLIYCSRTMSEIEKALAELRELMKYRTEQLGQE 59
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
+ +GL+SRKNLC++ V ++ VDA CR TA +V+ + N++ C + +N
Sbjct: 60 EEFRGLGLTSRKNLCLHPSVKREKSGSVVDARCRSLTAGFVKEKKDKGENVDVCVYHDNL 119
Query: 162 EKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
+ ++P GV+T L +G+Q CPYF +R M+Q+ NV++YSY YLLDPK+A +
Sbjct: 120 DLLEPHNLIPNGVWTFDGLLRYGEQHKQCPYFTSRRMMQYCNVIIYSYHYLLDPKIAERV 179
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRL 281
S+E+ K+ +VVFDEAHNIDNVCIE+LS + +L A R ++++I K TD +L
Sbjct: 180 SRELSKDCIVVFDEAHNIDNVCIESLSTDITEDSLRKAARGAQNLDRKIAEMKQTDQEQL 239
Query: 282 RAEYNRLVEGLALRGNLPIADAWLSNPA-------LPSDILKEAVPGNIRRAEHFLHVLR 334
+ EY +LVEGL G DA++SNPA LP D+L EAVPGNIRRAEHF+ L+
Sbjct: 240 QNEYLKLVEGLRDAGEARQEDAFMSNPARLTDGKALPDDLLNEAVPGNIRRAEHFVAFLK 299
Query: 335 RLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEF 394
R ++YL+ R++ N E P SF+A + I++K L+FC ERL SL+ TLE+T+ +++
Sbjct: 300 RFIEYLKTRMKVRNTISETPPSFLAHLKEFTFIEKKPLKFCAERLTSLVRTLELTNIEDY 359
Query: 395 LHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSV 454
+Q + FATLV TY +GF +I+EPF+ +P+PVL +C DA++A+KPVFDRF SV
Sbjct: 360 QPLQEVATFATLVATYEKGFLLILEPFESEAAEVPNPVLHFTCLDAAIAIKPVFDRFSSV 419
Query: 455 VITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDP 514
+ITSGT+SP+++YP++L F VV S+ M+L R PM++TRGSDQ VST F +R++P
Sbjct: 420 IITSGTISPLEMYPKMLGFSTVVQESYSMTLARRSFLPMIVTRGSDQASVSTSFQVRNEP 479
Query: 515 GVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV 574
V RNYG LL E I PDG+V FF SY YM+ II+ W GIL E+ ++KL+ +ET D
Sbjct: 480 SVVRNYGSLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWKYKLILVETPDA 539
Query: 575 VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ET+LAL+ YR AC GRGAV VARGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 540 QETSLALETYRTACCNGRGAVLLCVARGKVSEGIDFDHQYGRAVLNIGVPFQYTESR 596
>gi|302503364|ref|XP_003013642.1| hypothetical protein ARB_00089 [Arthroderma benhamiae CBS 112371]
gi|291177207|gb|EFE33002.1| hypothetical protein ARB_00089 [Arthroderma benhamiae CBS 112371]
Length = 749
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 284/590 (48%), Positives = 410/590 (69%), Gaps = 1/590 (0%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
MP+GTGKTI LL+LI +Y PE+ KLIYC+RT+ E+EK L+EL+ L Y+++ LG
Sbjct: 1 MPSGTGKTITLLALIVAYQQHYPEHR-KLIYCSRTMSEIEKALSELRALMKYRSQKLGVV 59
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
A+GL+SRKNLC++ V ++ VDA CR TA +++ + ++E C + EN
Sbjct: 60 EDFRALGLTSRKNLCLHPSVKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENL 119
Query: 162 EKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
+ + ++PPGV+TL L +G+Q CPYF AR M+ + NV++YSY YLLDPK+A +
Sbjct: 120 DLLEPSNLVPPGVFTLDGLLKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERV 179
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRL 281
SKE+ ++S++VFDEAHNIDNVCIE+LS+ + +L A+R + + ++I+ K++DA +L
Sbjct: 180 SKELSRDSIIVFDEAHNIDNVCIESLSIDLTEDSLRKASRGANNLERKIDDMKSSDADKL 239
Query: 282 RAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLR 341
+ EY +LVEGL + ++NP LP D+LKE+VPGNIRRAEHF+ L+R ++YL+
Sbjct: 240 QNEYQKLVEGLREADEAREEEQLMANPVLPDDLLKESVPGNIRRAEHFVAFLKRFIEYLK 299
Query: 342 GRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTIC 401
R++ + E P+SF++ + I++K LRFC ERL SL+ TLE+ + +++ +Q +
Sbjct: 300 TRMKVTHTISETPLSFLSHLKDLTFIERKPLRFCAERLTSLVRTLELVNIEDYQPLQEVA 359
Query: 402 DFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTL 461
FATL TY +GF +I+EPF+ +P+P+L +C DA++A+KPVFDRF SV+ITSGTL
Sbjct: 360 TFATLAATYEKGFLLILEPFESDTATVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTL 419
Query: 462 SPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYG 521
SP+++YP++L F + S+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG
Sbjct: 420 SPLEMYPKMLGFDAALQESYSMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYG 479
Query: 522 KLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLAL 581
+L+E I PDG+V FF SY YM+ II+ W GIL + +KL+ +ET D E++LAL
Sbjct: 480 NMLLEFCRITPDGVVVFFPSYLYMESIISMWQGMGILDSVWNYKLILVETPDSQESSLAL 539
Query: 582 DNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+ YR AC GRGAV VARGKV+EGIDFD HYGR V+ GVPFQYT S+
Sbjct: 540 ETYRTACCNGRGAVLLCVARGKVSEGIDFDHHYGRTVLCIGVPFQYTESR 589
>gi|346976950|gb|EGY20402.1| DNA repair helicase RAD3 [Verticillium dahliae VdLs.17]
Length = 772
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 302/649 (46%), Positives = 414/649 (63%), Gaps = 55/649 (8%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELK------------------RALDAKGHCLLEM 42
M F ++D+ V FPY IYPEQY+YM +LK LDA GHC+LEM
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKSRSSMAETSPCQYADTALETLDAGGHCVLEM 60
Query: 43 PTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA 102
P+GTGKT++LLSLI +Y PE+ KLIYC+RT+ E+EK LAEL+ L Y+T LG
Sbjct: 61 PSGTGKTVSLLSLIVAYQQHYPEHR-KLIYCSRTMSEIEKALAELRELMKYRTEQLGQEE 119
Query: 103 KILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE 162
+ TA +V+ + N++ C + +N +
Sbjct: 120 DL---------------------------------TAGFVKEKKDKGENVDVCVYHDNLD 146
Query: 163 KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS 222
++P GV+T L +G+Q CPYF +R M+Q+ NV++YSY YLLDPK+A +S
Sbjct: 147 LLEPHNLIPNGVWTFDGLLRYGEQHKQCPYFTSRRMMQYCNVIIYSYHYLLDPKIAERVS 206
Query: 223 KEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR 282
+E+ K+ +VVFDEAHNIDNVCIE+LS + +L A R ++++I K TD +L+
Sbjct: 207 RELSKDCIVVFDEAHNIDNVCIESLSTDITEDSLRKAARGAQNLDRKIAEMKQTDQEQLQ 266
Query: 283 AEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRG 342
EY +LVEGL G DA+++NP D+L EAVPGNIRRAEHF+ L+R ++YL+
Sbjct: 267 NEYLKLVEGLRDAGEARQEDAFMANP---DDLLNEAVPGNIRRAEHFVAFLKRFIEYLKT 323
Query: 343 RLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICD 402
R++ N E P SF+A + I++K L+FC ERL SL+ TLE+T+ +++ +Q +
Sbjct: 324 RMKVRNTISETPPSFLAHLKEFTFIEKKPLKFCAERLTSLVRTLELTNIEDYQPLQEVAT 383
Query: 403 FATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLS 462
FATLV TY +GF +I+EPF+ +P+PVL +C DA++A+KPVFDRF SV+ITSGT+S
Sbjct: 384 FATLVATYEKGFLLILEPFESEAAEVPNPVLHFTCLDAAIAIKPVFDRFSSVIITSGTIS 443
Query: 463 PIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGK 522
P+++YP++L F VV S+ M+L R PM++TRGSDQ VST F +R++P V RNYG
Sbjct: 444 PLEMYPKMLGFSTVVQESYSMTLARRSFLPMIVTRGSDQASVSTSFQVRNEPSVVRNYGS 503
Query: 523 LLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALD 582
LL E I PDG+V FF SY YM+ II+ W GIL E+ ++KL+ +ET D ET+LAL+
Sbjct: 504 LLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWKYKLILVETPDAQETSLALE 563
Query: 583 NYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
YR AC GRGAV VARGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 564 TYRTACCNGRGAVLLCVARGKVSEGIDFDHQYGRAVLNIGVPFQYTESR 612
>gi|403220542|dbj|BAM38675.1| DNA excision-repair helicase [Theileria orientalis strain Shintoku]
Length = 851
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 313/728 (42%), Positives = 438/728 (60%), Gaps = 106/728 (14%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
F +E + VYFPY IYPEQ +YM LK ALDAKGH +LEMPTGTGKT+AL S ++SY L+
Sbjct: 4 FNIEGIEVYFPYPKIYPEQIAYMRSLKNALDAKGHAVLEMPTGTGKTVALFSFVSSYQLA 63
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHL--------------GPAAKILAIG 108
KPE KL+YCTRT+HEMEK+L EL+ + Y+ + LA+G
Sbjct: 64 KPELG-KLVYCTRTIHEMEKSLLELREVIAYRNEQMVKKEESEKESSENKKKNGYFLAVG 122
Query: 109 LSSRKNLCVNSRVLAAENRDSVDAACRKR--------TASWVR----------------- 143
L SR+NLC++ V + +R +D T+ W R
Sbjct: 123 LCSRRNLCIHPEVSSIADRTKIDEKSTDEQKIIGCDLTSMWKRIQFEDIIDNKRSEYTVQ 182
Query: 144 -------------ALAAENPNIET------CEFFENYEKAASAAVLPPGVYTLQDLRAF- 183
+ + P+IE C ++E E+ + ++P GVYTL+ L+ +
Sbjct: 183 YEGASPVKMPPSISTVEKIPDIEEFNALGLCGYYETMERVWNPTMIPSGVYTLEGLKEYS 242
Query: 184 --------GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES------ 229
GK CPYF+AR ++ AN+VV +YQY++DPKV+ + + ES
Sbjct: 243 KNFKNANTGKPSPICPYFMARRSIEHANIVVLNYQYMIDPKVSDAVFSHLCTESYLNMTK 302
Query: 230 --------------------------VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
VVVFDEAHNIDNVCIEALSV + +TL+ A +L
Sbjct: 303 ENPFSKEELIVPLTTNLGKDKTKLPIVVVFDEAHNIDNVCIEALSVELSTETLDNAYSDL 362
Query: 264 SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNI 323
+R+ + + + D L EY +LVE I NP L +DIL +AVPG+I
Sbjct: 363 TRLEENVNELRQRDQQLLLEEYQKLVENTNFDS---IDIEGYMNPVLRADILAKAVPGSI 419
Query: 324 RRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLM 383
R+AEHF+ L+ ++ YL+ ++ + + EGP+ F+ I + ++ Y R+ SL+
Sbjct: 420 RKAEHFISFLKVVIGYLKKYIKVQEAKSEGPLMFLYRFEHETEISSEVMQHTYNRMKSLL 479
Query: 384 LTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLA 443
TL++T + +Q + DF TLVGTY+ GF +I+EP+ DP+LQ SC DAS+A
Sbjct: 480 NTLKLTSIGDITSLQLVVDFCTLVGTYSNGFIVIVEPYPT---STYDPLLQFSCLDASIA 536
Query: 444 VKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP 503
+KPV D FQSVV+TSGT+SP++ YP++LNF PV+++S MS RDC+CP+++++G++Q+
Sbjct: 537 MKPVLDNFQSVVLTSGTISPLEFYPKILNFTPVLTQSLPMSFDRDCLCPIIVSKGANQVH 596
Query: 504 VSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQ 563
+STKFD+R+D V RNYG LL++ +PDGIVCFF SY+YM+ I++ W +SGIL IM+
Sbjct: 597 ISTKFDLRTDITVLRNYGALLIDFCKHIPDGIVCFFPSYAYMELILSHWYESGILASIME 656
Query: 564 HKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
HKL+F+ET+D V TTLAL NYRKACD GRGA+F S+ RGKVAEGIDFDRHYGR V++ G+
Sbjct: 657 HKLIFMETKDPVTTTLALYNYRKACDVGRGALFLSICRGKVAEGIDFDRHYGRCVVLVGI 716
Query: 624 PFQYTLSK 631
PFQYTLSK
Sbjct: 717 PFQYTLSK 724
>gi|38455500|gb|AAR20847.1| xeroderma pigmentosum D [Drosophila melanogaster]
gi|38455503|gb|AAR20849.1| xeroderma pigmentosum D [Drosophila melanogaster]
gi|38455507|gb|AAR20851.1| xeroderma pigmentosum D [Drosophila melanogaster]
gi|38455515|gb|AAR20856.1| xeroderma pigmentosum D [Drosophila melanogaster]
gi|38455523|gb|AAR20861.1| xeroderma pigmentosum D [Drosophila melanogaster]
Length = 685
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 276/547 (50%), Positives = 385/547 (70%)
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
AEL+ L Y RH + LSSRKN+C++ V +VD C TAS++R
Sbjct: 1 AELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRE 60
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+ C++FE + + LP GVY++ DL+ +G+ + WCPYFLAR+ + A++
Sbjct: 61 RHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYGRSRNWCPYFLARYAIAHAHI 120
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNIDNVCI+++SV + R+T+E +T L+
Sbjct: 121 VVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNALN 180
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + ++ + D RL EY R+V+GL D L+NP LP+D+L E VPGNIR
Sbjct: 181 HLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIR 240
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
A+HFL LRR ++Y++ RL +V +E P F+ I++ I++K LRFC ERL SL+
Sbjct: 241 NADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKDISSKICIERKPLRFCAERLSSLLR 300
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLEI+D E+ + I FATLV TYT+GF+IIIEPFD++ P + +P+L SC D+S+A+
Sbjct: 301 TLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFSCLDSSIAM 360
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
PVF RFQ+VVITSGTLSP+D+YP++L+F PVV SF M+L R C+ PM++++G+DQ+ +
Sbjct: 361 APVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMIVSKGNDQVTI 420
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+KF+ R D V RNYG+LLVE+ VPDGIVCFF SY Y++ ++A+W D GI+ ++++
Sbjct: 421 SSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTLLRY 480
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+FIETQD ET+ AL NY KACDCGRGAV +VARGKV+EG+DFD HYGR V+MFG+P
Sbjct: 481 KLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMFGIP 540
Query: 625 FQYTLSK 631
+ YT S+
Sbjct: 541 YVYTQSR 547
>gi|401882732|gb|EJT46976.1| general RNA polymerase II transcription factor [Trichosporon asahii
var. asahii CBS 2479]
Length = 794
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 297/659 (45%), Positives = 427/659 (64%), Gaps = 56/659 (8%)
Query: 1 MIFKLEDVTVYFPYDNI--------------------------YPEQYSYMLELKRALDA 34
M F ++D+ V FPY+++ YSYM +LK+ LDA
Sbjct: 1 MKFMIDDLPVLFPYESLPHGLDLLAGLPMLPPRPVTIVVVHADKDHDYSYMCDLKKTLDA 60
Query: 35 KGHCLLEMPTGTGKTIALLSLITSYV-LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY 93
MP+GTGKT++LLSLI SY+ E KLIYC+RTV E+EK LAELK L Y
Sbjct: 61 G------MPSGTGKTVSLLSLIISYMQFYGGEKKRKLIYCSRTVPEIEKALAELKRLMEY 114
Query: 94 QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP-NI 152
+ +GL+SRKNLC+N + VD+ CR T+S+ +P ++
Sbjct: 115 REDMGAKDTGFRGLGLTSRKNLCLNPE---EKKGKVVDSRCRDMTSSFACEKGRADPGSV 171
Query: 153 ETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYL 212
+ C + E ++P GV+TL D++ +G+++G CPYF R M+ + +V++YS+ YL
Sbjct: 172 QLCSWHEELNNYEPGHLIPEGVWTLDDVKKYGQEKGVCPYFTIRRMMPYVDVIIYSFHYL 231
Query: 213 LDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIER 272
LDPKVA +S E+ KE++VVFDEAHNI A R++++I +I+
Sbjct: 232 LDPKVAEQVSAELSKEAIVVFDEAHNI-------------------AARSVAKIGDKIDE 272
Query: 273 FKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHV 332
K +DA +L AEY +LV+GLA + D LSNP L D+++EA+PGNIR+AEHF+
Sbjct: 273 IKKSDAEKLNAEYQKLVDGLAAANDRREEDDMLSNPVLSEDMIQEAIPGNIRKAEHFIAF 332
Query: 333 LRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTD 392
L+R ++YL+ R+ +V E P SF+A + I+++ L+FC ERL SL+ TLE+T+ D
Sbjct: 333 LKRFIEYLKTRMRVLHVVAETPQSFMAHLKEITFIEKRPLQFCAERLTSLIRTLELTNLD 392
Query: 393 EFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQ 452
E +Q I F TLV TY +GF +I+EP++ +P+P+ +C D SLA+ PVF+RF
Sbjct: 393 EHFALQKIASFGTLVATYEKGFLLILEPYETEHATVPNPIFHFTCLDPSLAMAPVFERFS 452
Query: 453 SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
SV+ITSGT+SP+D+YP++L F PV+ S+ M+LTR+ PMV+TRGSDQ+P+S++F++R+
Sbjct: 453 SVIITSGTISPLDMYPKMLQFQPVIQESYPMTLTRNAFLPMVITRGSDQVPISSRFEVRN 512
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ 572
DP V RN+G +L++M VPDG+V FF SY YM+ I++ W D GIL E+ +HKL+F+ET
Sbjct: 513 DPAVVRNFGSILIDMAKTVPDGVVAFFPSYLYMESIVSAWYDMGILSEVWKHKLLFVETP 572
Query: 573 DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
D +ET++AL NYR+AC+ GRGAV SVARGKV+EGIDFD +YGR VIMFG+P+QYT S+
Sbjct: 573 DAMETSIALKNYREACNNGRGAVLLSVARGKVSEGIDFDHNYGRAVIMFGIPYQYTESR 631
>gi|38455521|gb|AAR20860.1| xeroderma pigmentosum D [Drosophila melanogaster]
Length = 685
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 276/547 (50%), Positives = 385/547 (70%)
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
AEL+ L Y RH + LSSRKN+C++ V +VD C TAS++R
Sbjct: 1 AELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRE 60
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+ C++FE + + LP GVY++ DL+ +G+ + WCPYFLAR+ + A++
Sbjct: 61 RHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYGRSRNWCPYFLARYAIAHAHI 120
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNIDNVCI+++SV + R+T+E +T L+
Sbjct: 121 VVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNALN 180
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + ++ + D RL EY R+V+GL D L+NP LP+D+L E VPGNIR
Sbjct: 181 HLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIR 240
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
A+HFL LRR ++Y++ RL +V +E P F+ I++ I++K LRFC ERL SL+
Sbjct: 241 NADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKDISSKICIERKPLRFCAERLSSLLR 300
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLEI+D E+ + I FATLV TYT+GF+IIIEPFD++ P + +P+L SC D+S+A+
Sbjct: 301 TLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFSCLDSSIAM 360
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
PVF RFQ+VVITSGTLSP+D+YP++L+F PVV SF M+L R C+ PM++++G+DQ+ +
Sbjct: 361 APVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMIVSKGNDQVTI 420
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+KF+ R D V RNYG+LLVE+ VPDGIVCFF SY Y++ ++A+W D GI+ ++++
Sbjct: 421 SSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTLLRY 480
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+FIETQD ET+ AL NY KACDCGRGAV +VARGKV+EG+DFD HYGR V+MFG+P
Sbjct: 481 KLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMFGIP 540
Query: 625 FQYTLSK 631
+ YT S+
Sbjct: 541 YVYTQSR 547
>gi|302666624|ref|XP_003024909.1| hypothetical protein TRV_00914 [Trichophyton verrucosum HKI 0517]
gi|291188986|gb|EFE44298.1| hypothetical protein TRV_00914 [Trichophyton verrucosum HKI 0517]
Length = 765
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 283/606 (46%), Positives = 410/606 (67%), Gaps = 17/606 (2%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
MP+GTGKTI LL+LI +Y PE+ KLIYC+RT+ E+EK L+EL+ L Y+++ LG
Sbjct: 1 MPSGTGKTITLLALIVAYQQHYPEHR-KLIYCSRTMSEIEKALSELRALMKYRSQKLGVV 59
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETC------ 155
A+GL+SRKNLC++ V ++ VDA CR TA +++ + ++E C
Sbjct: 60 EDFRALGLTSRKNLCLHPSVKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHEVR 119
Query: 156 ----------EFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+ +N + + ++PPGV+TL L +G+Q CPYF AR M+ + NV+
Sbjct: 120 SSSPISRSKADLLQNLDLLEPSNLVPPGVFTLDGLLKYGEQHKQCPYFSARRMMPYCNVI 179
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
+YSY YLLDPK+A +SKE+ ++S++VFDEAHNIDNVCIE+LS+ + +L A+R +
Sbjct: 180 IYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNIDNVCIESLSIDLTEDSLRKASRGANN 239
Query: 266 INQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRR 325
+ ++I+ K++DA +L+ EY +LVEGL + ++NP LP D+LKE+VPGNIRR
Sbjct: 240 LERKIDDMKSSDADKLQNEYQKLVEGLREADEAREEEQLMANPVLPDDLLKESVPGNIRR 299
Query: 326 AEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLT 385
AEHF+ L+R ++YL+ R++ + E P+SF++ + I++K LRFC ERL SL+ T
Sbjct: 300 AEHFVAFLKRFIEYLKTRMKVTHTISETPLSFLSHLKDLTFIERKPLRFCAERLTSLVRT 359
Query: 386 LEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVK 445
LE+ + +++ +Q + FATL TY +GF +I+EPF+ +P+P+L +C DA++A+K
Sbjct: 360 LELVNIEDYQPLQEVATFATLAATYEKGFLLILEPFESDTATVPNPILHFTCLDAAIAIK 419
Query: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
PVFDRF SV+ITSGTLSP+++YP++L F + S+ M+L R PM++TRGSDQ +S
Sbjct: 420 PVFDRFSSVIITSGTLSPLEMYPKMLGFDAALQESYSMTLARRSFLPMIVTRGSDQAQIS 479
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
+ F +R+DPGV RNYG +L+E I PDG+V FF SY YM+ II+ W GIL + +K
Sbjct: 480 SSFQIRNDPGVVRNYGNMLLEFCRITPDGVVVFFPSYLYMESIISMWQGMGILDSVWNYK 539
Query: 566 LVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L+ +ET D E++LAL+ YR AC GRGAV VARGKV+EGIDFD HYGR V+ GVPF
Sbjct: 540 LILVETPDSQESSLALETYRTACCNGRGAVLLCVARGKVSEGIDFDHHYGRTVLCIGVPF 599
Query: 626 QYTLSK 631
QYT S+
Sbjct: 600 QYTESR 605
>gi|38455510|gb|AAR20853.1| xeroderma pigmentosum D [Drosophila melanogaster]
Length = 685
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 275/547 (50%), Positives = 384/547 (70%)
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
AEL+ L Y RH + LSSRKN+C++ V +VD C TAS++R
Sbjct: 1 AELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRE 60
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+ C++FE + + LP GVY++ DL+ +G+ + WCPYFLAR+ + A++
Sbjct: 61 RHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYGRSRNWCPYFLARYAIAHAHI 120
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNIDNVCI+++SV + R+T+E +T L+
Sbjct: 121 VVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNALN 180
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + ++ + D RL Y R+V+GL D L+NP LP+D+L E VPGNIR
Sbjct: 181 HLTKLVQDIREEDTNRLNEXYQRMVQGLKDASVQRXTDMILANPVLPNDVLTEVVPGNIR 240
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
A+HFL LRR ++Y++ RL +V +E P F+ I++ I++K LRFC ERL SL+
Sbjct: 241 NADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKDISSKICIERKPLRFCAERLSSLLR 300
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLEI+D E+ + I FATLV TYT+GF+IIIEPFD++ P + +P+L SC D+S+A+
Sbjct: 301 TLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFSCLDSSIAM 360
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
PVF RFQ+VVITSGTLSP+D+YP++L+F PVV SF M+L R C+ PM++++G+DQ+ +
Sbjct: 361 APVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMIVSKGNDQVTI 420
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+KF+ R D V RNYG+LLVE+ VPDGIVCFF SY Y++ ++A+W D GI+ ++++
Sbjct: 421 SSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTLLRY 480
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+FIETQD ET+ AL NY KACDCGRGAV +VARGKV+EG+DFD HYGR V+MFG+P
Sbjct: 481 KLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMFGIP 540
Query: 625 FQYTLSK 631
+ YT S+
Sbjct: 541 YVYTQSR 547
>gi|400593003|gb|EJP61017.1| DNA repair helicase RAD3 [Beauveria bassiana ARSEF 2860]
Length = 749
Score = 603 bits (1554), Expect = e-169, Method: Compositional matrix adjust.
Identities = 285/590 (48%), Positives = 400/590 (67%), Gaps = 4/590 (0%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
MP+GTGKT++LLSLI +Y S PE KLIYC+RT+ E+EK L EL+ L Y+T LG
Sbjct: 1 MPSGTGKTVSLLSLIVAYQQSMPEKR-KLIYCSRTMSEIEKALMELEALMKYRTEQLGHE 59
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
+GL+SRKNLC++ V ++ VDA CR TA +V+ N++ C + +N
Sbjct: 60 EDFRGLGLTSRKNLCLHPSVKREKSGSVVDARCRSLTAGFVKEKKERGENVDLCVYHDNL 119
Query: 162 EKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
+ S ++P GV+T + +G++ CPYF AR M+Q+ NVV++SY YLLDPK+A +
Sbjct: 120 DLLESHNLIPNGVWTFDGILRYGEEHKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERV 179
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRL 281
+K+ K+ +VVFDEAHNIDNVCIE+LS + +L ATR + Q+I + TD +L
Sbjct: 180 TKDFSKDCIVVFDEAHNIDNVCIESLSTDITEDSLRRATRGAQNLKQKIADMRETDQEQL 239
Query: 282 RAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLR 341
+ EY +LV+GL DA+++NP LP ++L+EAVPGNIRRAEHF+ L+R ++YL+
Sbjct: 240 QNEYEKLVQGLREADEARQEDAFMANPVLPEELLREAVPGNIRRAEHFVSFLQRFIEYLK 299
Query: 342 GRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTIC 401
V E P SF+A + H I++K L FC ERL SL+ TLE+T+ D++ +Q +
Sbjct: 300 A---GAPVISETPPSFLAHLKEHTFIEKKPLGFCAERLTSLVRTLELTNIDDYQPLQEVA 356
Query: 402 DFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTL 461
FATLV TY +GF +I+EP++ +P+P+L +C DA++A++PVFDRF SV+ITSGT+
Sbjct: 357 TFATLVATYDKGFLLILEPYESDTAEVPNPILHFTCLDAAIAIRPVFDRFYSVIITSGTI 416
Query: 462 SPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYG 521
SP+++YP++L+F V+ S+ M+L R PM++TRGSDQ +ST F +R++P V RNYG
Sbjct: 417 SPLEMYPKMLDFSTVIQESYSMTLARRSFLPMIVTRGSDQASISTSFQVRNEPSVVRNYG 476
Query: 522 KLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLAL 581
LL E I PDG+V FF SY YM+ II+ W GIL E+ ++KL+ +ET D ET+LAL
Sbjct: 477 NLLTEFAKITPDGLVVFFPSYLYMESIISMWQGMGILDEVWKYKLILVETPDAQETSLAL 536
Query: 582 DNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+ YR AC GRGA+ VARGKV+EGIDFD YGR V+ GVPFQYT S+
Sbjct: 537 ETYRTACCNGRGAILLCVARGKVSEGIDFDHQYGRTVLCIGVPFQYTESR 586
>gi|38455518|gb|AAR20858.1| xeroderma pigmentosum D [Drosophila melanogaster]
Length = 685
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 275/547 (50%), Positives = 384/547 (70%)
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
AEL+ L Y RH + LSSRKN+C++ V +VD C TAS++R
Sbjct: 1 AELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRE 60
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+ C++FE + + LP GVY++ DL+ +G+ + WCPYFLAR+ + A++
Sbjct: 61 RHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYGRSRNWCPYFLARYAIAHAHI 120
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNIDNVCI+++SV + R+T+E +T L+
Sbjct: 121 VVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNALN 180
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + ++ + D RL EY R+V+GL D L+NP LP+D+L E VPGNIR
Sbjct: 181 HLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIR 240
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
A+HFL LRR ++Y++ RL +V +E P F+ I++ I++K LRFC ERL SL+
Sbjct: 241 NADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKDISSKICIERKPLRFCAERLSSLLR 300
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLEI+D E+ + I FATLV TYT+GF+IIIEPFD++ P + +P+L SC D+S+A+
Sbjct: 301 TLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFSCLDSSIAM 360
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
PVF RFQ+VVITSGTLSP+D+YP++L+F PVV SF M+L R C+ PM++++G+DQ+ +
Sbjct: 361 APVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMIVSKGNDQVTI 420
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+KF+ R D V RNYG+LLVE+ VPDGIVCFF SY Y++ ++A+W D GI+ ++++
Sbjct: 421 SSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTLLRY 480
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+FIET D ET+ AL NY KACDCGRGAV +VARGKV+EG+DFD HYGR V+MFG+P
Sbjct: 481 KLLFIETXDNAETSYALMNYVKACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMFGIP 540
Query: 625 FQYTLSK 631
+ YT S+
Sbjct: 541 YVYTQSR 547
>gi|429328706|gb|AFZ80466.1| DNA repair helicase rad3/xp-D, putative [Babesia equi]
Length = 851
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 320/725 (44%), Positives = 443/725 (61%), Gaps = 102/725 (14%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
F ++ + V+FPY IYPEQ +YM LK ALDA GH +LEMPTGTGKT+AL S + SY L+
Sbjct: 4 FWVDGIEVFFPYPKIYPEQLAYMRSLKNALDAHGHAVLEMPTGTGKTVALFSFVASYQLA 63
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHL----------------GPAAK--- 103
+PE KLIYCTRT+HEMEK+L ELK + NY+ L GP A
Sbjct: 64 RPEVG-KLIYCTRTIHEMEKSLLELKEVINYRNAELRKDRLAKNDIAVKTEPGPEASSAV 122
Query: 104 --------------------ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR 143
LA GL SR+NLC++ V A +R +D C + W R
Sbjct: 123 DKYNRTGTWPIIHLNTHLGYFLAFGLCSRRNLCIHPEVSACADRTKIDERCADLMSLWRR 182
Query: 144 ALAAEN--------------------------------PNIET------CEFFENYEKAA 165
E P+IE C + EN E
Sbjct: 183 VQYEETHQTKAREFTIEFEGTDSNPQRQAPSTSAVERVPDIEEYNSMGLCGYHENMENVW 242
Query: 166 SAAVLPPGVYTLQDLRAF---------GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPK 216
+ ++P GVYTL+ L+ GK CPYF+AR ++ AN+VV +YQY++DPK
Sbjct: 243 NRTLVPAGVYTLEGLKEHCNNFKNPTNGKPAPICPYFMARRCIEMANIVVLNYQYMIDPK 302
Query: 217 VAGII------SKEMQKES----VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
V+ + K Q +S VVVFDEAHNIDNVCIEALSV + +TL+ A +L+ +
Sbjct: 303 VSESVFSHFSTDKSKQTKSKLPIVVVFDEAHNIDNVCIEALSVELNGETLDQAYTDLAHL 362
Query: 267 NQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRA 326
+ I + D L EYN+L+E L + L I + ++S P LP DIL +AVPG+IR+A
Sbjct: 363 EENIRVLREKDEDALLQEYNKLLENLKM-DTLDI-EGYMS-PVLPDDILMKAVPGSIRKA 419
Query: 327 EHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386
EHF+ L+ ++ YL+ ++ + EGP+ F+ I +T++ Y R+ SL+ TL
Sbjct: 420 EHFISYLKIIIGYLKKYIKVFEAKSEGPLMFLYRFEHETDILAETMQHTYNRMKSLLNTL 479
Query: 387 EITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKP 446
++T + +Q + DF TLVGTY+ GF +I++P+ I DP+LQ SC DAS+A++P
Sbjct: 480 KMTSVGDISSLQLVVDFCTLVGTYSAGFIVIVDPYPN--GSIYDPLLQFSCLDASIAMRP 537
Query: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVST 506
V + F+SV++TSGT+SP++ YP++LNF PV+++S MS RDC+CP+++++G++Q+ +ST
Sbjct: 538 VLEGFRSVILTSGTISPLEFYPKILNFTPVLTQSLPMSFDRDCLCPIIVSKGANQVQMST 597
Query: 507 KFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKL 566
+FD+R+D V RNYG LL++ +PDGIVCFF SY+YM+ I++ W + GIL IM+HKL
Sbjct: 598 RFDLRTDVTVLRNYGSLLIDFCKHIPDGIVCFFPSYAYMELILSHWYECGILSSIMEHKL 657
Query: 567 VFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626
+F+ETQD V TTLAL NYRKACD GRGAVF SV RGKVAEGIDFDRHYGR V++ G+PFQ
Sbjct: 658 IFMETQDAVSTTLALYNYRKACDVGRGAVFMSVCRGKVAEGIDFDRHYGRCVVLVGIPFQ 717
Query: 627 YTLSK 631
YTLS+
Sbjct: 718 YTLSR 722
>gi|226289058|gb|EEH44570.1| DNA repair helicase RAD3 [Paracoccidioides brasiliensis Pb18]
Length = 791
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 295/625 (47%), Positives = 403/625 (64%), Gaps = 55/625 (8%)
Query: 7 DVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPEN 66
D+ V FPY IYPEQY+YM +LK+ LD GHC+LEMP+GTGKT++LLSLI +Y KPE
Sbjct: 55 DLPVLFPYPRIYPEQYAYMCDLKKTLDTGGHCVLEMPSGTGKTVSLLSLIIAYQQHKPEQ 114
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
KLIYC+RT+ E+EK LAELK L Y+ + LG +GL+SRKNLC++ V ++
Sbjct: 115 R-KLIYCSRTMSEIEKALAELKALMKYRAQQLGYTEDFRGLGLTSRKNLCLHPSVKREKS 173
Query: 127 RDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQ 186
VDA CR TA +V+ ++E C +
Sbjct: 174 GTIVDARCRSLTAGFVKEKKERGEDVELCIY----------------------------- 204
Query: 187 QGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEA 246
H + F NV++YSY YLLDPK+A +S+E+ K+S+VVFDEAHNIDNVCIE+
Sbjct: 205 ----------HEMPFCNVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNIDNVCIES 254
Query: 247 LSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLS 306
LS+ + +L A+R + + + I+ K++DA +L+ EY +LVEGL + ++
Sbjct: 255 LSIDLTEDSLRKASRGANNLERRIDEMKSSDAEKLQNEYQKLVEGLREADEARQEEQLMA 314
Query: 307 NPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAG 366
NPALP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P SF+A +
Sbjct: 315 NPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFLAHLKDLTF 374
Query: 367 IDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMP 426
I++K LRFC ERL SL+ TLE+ + +++ +Q + FATL TY +GF +I+EPF+
Sbjct: 375 IERKPLRFCAERLTSLVRTLELMNLEDYQPLQQVAAFATLAATYEKGFLLILEPFESDTA 434
Query: 427 HIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT 486
+P+P+L +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++L F V+ S+ M+L
Sbjct: 435 TVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFTTVLQESYSMTLA 494
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
R PM++TRGSDQ +S+ F +R+DPGV RNYG LL+E I PDGIV FF SY YM+
Sbjct: 495 RRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYME 554
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAE 606
II+ W +ET D E++LAL+ YR AC GRGA+ VARGKV+E
Sbjct: 555 SIISMWQ---------------VETPDSQESSLALETYRTACCNGRGAILLCVARGKVSE 599
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSK 631
GIDFD HYGR VI GVPFQYT S+
Sbjct: 600 GIDFDHHYGRTVICIGVPFQYTESR 624
>gi|116204809|ref|XP_001228215.1| hypothetical protein CHGG_10288 [Chaetomium globosum CBS 148.51]
gi|88176416|gb|EAQ83884.1| hypothetical protein CHGG_10288 [Chaetomium globosum CBS 148.51]
Length = 732
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/608 (47%), Positives = 401/608 (65%), Gaps = 40/608 (6%)
Query: 24 YMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKT 83
YM++LK+ LDA G+C+LEMP+GTGKT+ LLSLI +Y P + KLIYC+RT+ E+EK
Sbjct: 7 YMVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQQYYPSHR-KLIYCSRTMSEIEKA 65
Query: 84 LAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR 143
L ELK L ++T LG + +GL+SRKNLC++ V ++ + VDA CR TA +V+
Sbjct: 66 LVELKALMKFRTERLGHEEEFRGLGLTSRKNLCLHPSVRREKSGNVVDARCRSLTAGFVK 125
Query: 144 ALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFAN 203
+ ++E C VY H +Q+ N
Sbjct: 126 EKKEKGEDVEVC------------------VY---------------------HDMQYCN 146
Query: 204 VVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
V++YSY YLLDPK+A +SK++ K+ +VVFDEAHNIDNVCIE+LS + +L ATR
Sbjct: 147 VIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNIDNVCIESLSTDITDDSLRRATRGA 206
Query: 264 SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNI 323
+ +I + +D +L+ EY +LVEGL + D++++NP LP D+LKEAVPGNI
Sbjct: 207 QNLENKINEMRDSDKQKLQDEYEKLVEGLRGADDGRQEDSFMANPTLPDDLLKEAVPGNI 266
Query: 324 RRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLM 383
RRAEHF+ LRR ++YL+ R++ V E P SF++ + H I++K LRFC ERL SL+
Sbjct: 267 RRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLSHLKEHTFIEKKPLRFCAERLTSLV 326
Query: 384 LTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLA 443
TLE+T+ +++ +Q + FATLV TY +GF +I+EPF+ +P+PVL +C DA++A
Sbjct: 327 RTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPFESDTAEVPNPVLHFTCLDAAIA 386
Query: 444 VKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP 503
+KPVFDRF SVVITSGT+SP+++YP++L+F VV S+ M+L R PM++TRGSDQ
Sbjct: 387 IKPVFDRFSSVVITSGTMSPLEMYPKMLDFPTVVQESYSMTLARRSFLPMIVTRGSDQAS 446
Query: 504 VSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQ 563
+ST F +R++P V RNYG LL E I PDG+V FF SY YM+ II+ W GIL E+ +
Sbjct: 447 ISTSFQVRNEPSVVRNYGSLLTEFAKITPDGLVVFFPSYLYMESIISMWQGMGILDEVWK 506
Query: 564 HKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
+KL+ +ET D ET+LAL+ YR AC GRGAV VARGKV+EGIDFD YGR V+ GV
Sbjct: 507 YKLILVETPDAQETSLALETYRTACCNGRGAVLLCVARGKVSEGIDFDHQYGRTVLCIGV 566
Query: 624 PFQYTLSK 631
PFQYT S+
Sbjct: 567 PFQYTESR 574
>gi|393910719|gb|EJD76012.1| Ercc2 protein [Loa loa]
Length = 705
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 290/590 (49%), Positives = 404/590 (68%), Gaps = 16/590 (2%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
MP+GTGKT++LLSL+ +Y+L P++ KL+YC+RT+ E+EK + EL+ L Y + G
Sbjct: 1 MPSGTGKTVSLLSLVVAYMLRFPDHLDKLVYCSRTIPEIEKCVEELRNLFKYYEQCDGKP 60
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
+ A+ LS+RKNLC+N V + VD AC+K TAS+VRA P++ C FFE
Sbjct: 61 PSLFAVALSARKNLCINESVSSLRQGSLVDGACQKLTASFVRAKRKLRPDLPCCTFFEKL 120
Query: 162 EKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
++ L GVY LQ+LR G+Q G CPYFL+R++V A++VVYSY Y+LDPK+A ++
Sbjct: 121 DEQEDFNHLD-GVYNLQNLRKLGQQNGICPYFLSRNVVDRAHIVVYSYHYILDPKIAELV 179
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRL 281
SK + S VVFDEAHNIDNVCIE++SVS+ + T+E AT+ L + + ++R + ++ +L
Sbjct: 180 SKNFSRHSCVVFDEAHNIDNVCIESMSVSLTKTTVEKATQKLGILEEHVQRLREENSEQL 239
Query: 282 RAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLR 341
R EY+RLVEGL D L+NP LP ILKEAVPG IR A HF+ LRR +YL+
Sbjct: 240 RVEYDRLVEGLKRVEEERTNDQVLANPVLPDMILKEAVPGTIRNALHFISFLRRFNEYLK 299
Query: 342 GRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTIC 401
R+ T+ V E P +F+ I ID++ LRFC ER SL TLE+ D +F + I
Sbjct: 300 HRMRTKTVLIENPAAFLRDINDLMHIDRRPLRFCAERFASLTRTLELADISDFSSLVLIT 359
Query: 402 DFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTL 461
+FATLV TY RGF+I+IEP DE+ L LSC DAS+A++P+F R+++VVITSGTL
Sbjct: 360 NFATLVSTYARGFTIVIEPLDEKSGIGHSCTLHLSCMDASVAIRPIFQRYRTVVITSGTL 419
Query: 462 SPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYG 521
SP+D+YP++L+F P V S M+L R CI P+++++G+DQ+ ++++F+ R D V RNYG
Sbjct: 420 SPLDMYPKILDFDPAVMASLSMTLARPCIAPLIVSKGNDQVAMTSRFESREDAAVIRNYG 479
Query: 522 KLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLAL 581
L++E+VS+VPDG+V F GI+ E++++KL+FIET D +ET++AL
Sbjct: 480 SLVLELVSLVPDGVVVFL---------------PGIIDELLKYKLLFIETTDALETSIAL 524
Query: 582 DNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+ Y +ACDCGRGAVFFSVARGKV+EGIDF H GR VIM GVP+ YT S+
Sbjct: 525 EKYVEACDCGRGAVFFSVARGKVSEGIDFSHHLGRAVIMLGVPYVYTESR 574
>gi|296423910|ref|XP_002841495.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637735|emb|CAZ85686.1| unnamed protein product [Tuber melanosporum]
Length = 748
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 287/600 (47%), Positives = 402/600 (67%), Gaps = 30/600 (5%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M FK++++ V FPY IYP ++ YM +LKR LDA GHC+LEMP+GTGKT++LLSLI +Y
Sbjct: 43 MRFKIDELEVLFPYPRIYPGEWRYMTDLKRTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 102
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
S PE P KLIYC+RT+ E+EK LAELK L Y+++ LG
Sbjct: 103 QSFPE-PRKLIYCSRTMSEIEKALAELKALMAYRSKELG--------------------- 140
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
E R S+ TA +V+ A +E C F +N + ++ PGVYTL +
Sbjct: 141 -YVEEFRGSL-------TAGFVKEKKARGEEVEVCVFHDNLDTLEPHNLITPGVYTLDGM 192
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF AR M+ F NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNID
Sbjct: 193 LKYGEKHTQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 252
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A R + ++I KA+DA +L+ EY +LVEGL
Sbjct: 253 NVCIESLSIDLTDDSLRRAARGAQNLEKKINEMKASDAEKLQNEYKKLVEGLRDVDEGTE 312
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D++++NP LP D+LKEA+PGNIRRAEHFL L+R V+YL+ R++ +V E P SF+
Sbjct: 313 EDSFMANPVLPKDLLKEAIPGNIRRAEHFLAFLKRFVEYLKTRMKVLHVISETPASFLQH 372
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY +GF +I+EP
Sbjct: 373 LKDLTFIEKKPLRFCAERLTSLVRTLELANIEDYKSLQEVAMFATLVATYEKGFLLILEP 432
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L +C DAS+A++PVF+RF SVVITSGT+SP+++YP++L F+ VV S
Sbjct: 433 FESETATVPNPILHFTCLDASIAIRPVFERFSSVVITSGTISPLEMYPKMLQFNTVVQES 492
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ+ VST+F++R+DP V RNYG LLVE I PDG+V FF
Sbjct: 493 YSMTLARRSFLPMIVTRGSDQVAVSTRFEIRNDPSVVRNYGSLLVEFSKITPDGMVVFFP 552
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL E+ ++KL+ +ET D ET+LAL+ YR AC GRGA+ +++
Sbjct: 553 SYLYMESIISMWQGMGILDEVWKYKLILVETPDSQETSLALETYRTACCNGRGAISTTIS 612
>gi|350644408|emb|CCD60850.1| DNA repair helicase rad3/xp-d, putative [Schistosoma mansoni]
Length = 698
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 278/564 (49%), Positives = 397/564 (70%), Gaps = 1/564 (0%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M+ELKR +DAKGH +LEMP+GTGKT++LLSLI +Y+ ++P K IYC+RTV E+EK +
Sbjct: 1 MIELKRTIDAKGHGVLEMPSGTGKTVSLLSLIVAYMKARPGIVEKFIYCSRTVPELEKVI 60
Query: 85 AELKLLHNY-QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR 143
ELK+L Y T +L I LSSRKNLC+ V A + +VD+AC + TAS+VR
Sbjct: 61 EELKVLDKYYATETNEKGCGLLGIVLSSRKNLCIQRDVKQAGDGAAVDSACFRLTASFVR 120
Query: 144 ALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFAN 203
+PN+ C+++E ++ LP G+Y + D++ + K+ +CPYFL R+ + +AN
Sbjct: 121 KKHMTDPNVPYCKYYEEFDLHGRDNPLPTGIYNMADIKTYAKKHNYCPYFLTRYAISYAN 180
Query: 204 VVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
+VVYSY YLLDPK+A ++S+E+ K SVVVFDEAHNIDNVCIE++S + R++LE T +L
Sbjct: 181 IVVYSYFYLLDPKIANVVSRELPKNSVVVFDEAHNIDNVCIESMSCLITRRSLEKCTTSL 240
Query: 264 SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNI 323
+ + Q + K ++ RL+ EY RLVEGL D L+NPALP DIL+E++PG++
Sbjct: 241 NLLTQTVNEAKTNNSERLKEEYQRLVEGLRQAKLSKETDLVLANPALPDDILQESIPGSL 300
Query: 324 RRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLM 383
R A+ FL LRR ++Y++ RL +V E PV+F+ +D+K L+FC ERL SL+
Sbjct: 301 RSADSFLSFLRRFLEYVKLRLRIAHVVHETPVAFLRDCLEKVCVDRKPLQFCAERLRSLL 360
Query: 384 LTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLA 443
TLE+ D F + +C+FATLV TYTRGF +IIEPFDER P I +PVL C DASL
Sbjct: 361 HTLELADYANFSSLTLLCNFATLVSTYTRGFCLIIEPFDERKPTIINPVLYFHCMDASLP 420
Query: 444 VKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP 503
++P+ RF SV+ITSGTLSP+++YPR+L+FHPV + SF M+L R+C+ PM++++G+DQ+P
Sbjct: 421 IRPIMSRFTSVIITSGTLSPLEMYPRILDFHPVNTVSFTMTLARNCVLPMIVSKGNDQVP 480
Query: 504 VSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQ 563
++TKF+ R D V RNYG LL ++ ++VPDGIV FF SY Y++ A+W + I+++I +
Sbjct: 481 MTTKFESRQDVAVIRNYGHLLAQLSAVVPDGIVAFFPSYHYLESTFASWYEQHIVEQIQR 540
Query: 564 HKLVFIETQDVVETTLALDNYRKA 587
+KL+F+ETQD ET+LAL Y +A
Sbjct: 541 NKLLFVETQDAEETSLALAAYHRA 564
>gi|358338885|dbj|GAA57512.1| DNA excision repair protein ERCC-2, partial [Clonorchis sinensis]
Length = 731
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 295/597 (49%), Positives = 403/597 (67%), Gaps = 40/597 (6%)
Query: 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQT 95
GH +LEMP+GTGKT++LLSLI +Y+ ++P K IYC+RTV E+EK + ELK+LH Y
Sbjct: 1 GHGVLEMPSGTGKTVSLLSLIVAYMKARPGAIEKFIYCSRTVPEIEKVVEELKVLHKYYA 60
Query: 96 RHLGP-AAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIET 154
+LAI LSSRKNLC+ V A + +VDAAC + TAS+VR A + + +
Sbjct: 61 AETNEDGCGLLAIALSSRKNLCIERDVRRAGDGAAVDAACFRLTASFVRKKHASDASTPS 120
Query: 155 CEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLD 214
C+F+E + AN++VYSY YLLD
Sbjct: 121 CKFYE---------------------------------------IMHANIIVYSYFYLLD 141
Query: 215 PKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
PK+A ++S+++ K SV+VFDEAHNIDNVCIE++S + R++LE AT +L+R+ ++ K
Sbjct: 142 PKIANLVSRDLPKNSVIVFDEAHNIDNVCIESMSCVLTRRSLEKATTSLNRLTDRVKDVK 201
Query: 275 ATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLR 334
+A RL+ EY RLVEGL D L+NP LP +IL+EAVPG++R A+ FL LR
Sbjct: 202 QHNAERLKEEYRRLVEGLRQAQVAKETDQVLANPILPDEILREAVPGSLRSADSFLAFLR 261
Query: 335 RLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEF 394
R ++Y++ RL +V E PV+F+ +D++ L+FC ERL SL+ TLE+ D EF
Sbjct: 262 RFLEYVKLRLRIAHVVHETPVAFLRDCLEKVCVDRRPLQFCAERLRSLLNTLELADYAEF 321
Query: 395 LHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSV 454
+ +C+FATLV TYTRGF +IIEPFDER P + +PVL C DASL ++PVF RF SV
Sbjct: 322 SSLTLLCNFATLVATYTRGFCLIIEPFDERSPTVINPVLYFYCMDASLPIRPVFSRFASV 381
Query: 455 VITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDP 514
+ITSGTLSP+D+YPR+L+FHPV S SF M+L R C+ PM++++G+DQ+P++TKF+ R D
Sbjct: 382 IITSGTLSPLDMYPRILDFHPVNSASFTMTLARSCVLPMIVSKGNDQVPMTTKFESREDM 441
Query: 515 GVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV 574
V RNYG LL ++ S+VPDGIV FF SY Y++ ATW + ++++I +HKL+F+ETQD
Sbjct: 442 AVVRNYGHLLAQLASVVPDGIVAFFPSYHYLESTFATWYEQHLIEQIQRHKLLFVETQDA 501
Query: 575 VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ET+LAL Y +AC+ GRGAV SVARG+V+EGIDFD H GR VIMFGVP+ YT S+
Sbjct: 502 EETSLALAAYHRACENGRGAVLLSVARGRVSEGIDFDHHLGRCVIMFGVPYVYTQSR 558
>gi|156083623|ref|XP_001609295.1| DNA excision repair helicase [Babesia bovis T2Bo]
gi|154796546|gb|EDO05727.1| DNA excision repair helicase [Babesia bovis]
Length = 822
Score = 583 bits (1503), Expect = e-163, Method: Compositional matrix adjust.
Identities = 312/696 (44%), Positives = 442/696 (63%), Gaps = 73/696 (10%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
F L+ + V+FPY IYPEQ +Y+ LK LDA+GH +LEMPTGTGKT+AL SLITSY L+
Sbjct: 4 FWLDGIEVFFPYPQIYPEQLAYLRSLKSTLDAQGHAVLEMPTGTGKTVALFSLITSYQLA 63
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG-----------------PAAKIL 105
+PE +LIYCTRT+ EMEK+L ELK + Y+ L P+++
Sbjct: 64 RPEMG-RLIYCTRTIPEMEKSLLELKEVIKYRDAELEKDRVAMEASSTSDSTGEPSSQSG 122
Query: 106 AIGLSSRKNL-CVNSRVLAAENRD-SVDAACRKRTASWVRALAA----------ENPNIE 153
+ +R +L V R+ E + S D + + V+ + E P+IE
Sbjct: 123 SSNTKNRHDLTSVWRRIEYEEGKPPSSDEHVLRFDGTSVQGVPTAPVVHHSRVEELPDIE 182
Query: 154 ------TCEFFENYEKAASAAVLPPGVYTLQDLRAF---------GKQQGWCPYFLARHM 198
C +E E+ + ++P GVYTL+ L+ + G CPYF AR
Sbjct: 183 HYTTMGLCGHYEYLERVWNPTMIPSGVYTLEGLKEYCSNFRHPLSGVSTPICPYFAARRA 242
Query: 199 VQFANVVVYSYQYLLDPKVAGII----------SKEMQKES-------------VVVFDE 235
+ ANVVV +YQYLLDPKV+ S++ +K++ VVVFDE
Sbjct: 243 LDIANVVVLNYQYLLDPKVSEAAFSNLYSTLPSSEKKEKDAPQKPAENKAKLPIVVVFDE 302
Query: 236 AHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALR 295
AHNIDNVCIEA+SV + TL+ A NL + + R + D +L EY RL E + +
Sbjct: 303 AHNIDNVCIEAMSVEINDDTLDEAYANLDILAGHVARQREKDERQLLEEYRRLAERI-VD 361
Query: 296 GNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPV 355
++ I + ++S P LP D++++A+PGNIRRAEHF+ LR +V YL+ L+ + EGP+
Sbjct: 362 SSIDI-EGYMS-PVLPDDVIQKAIPGNIRRAEHFISFLRTVVGYLKQYLKVQEPRSEGPL 419
Query: 356 SFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFS 415
F+ GI TL++ Y R+ SL+ TL IT + IQ + DF TLVGTYT GF
Sbjct: 420 MFLHRFEQETGIAYSTLQYTYNRMKSLLNTLSITALGDLSSIQLVADFCTLVGTYTTGFI 479
Query: 416 IIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHP 475
+I+EP+ + + +PV+Q SC DAS+A++PV + FQSV++TSGT+SP+++YP++LNF P
Sbjct: 480 VIVEPYPQG--SLYEPVIQFSCLDASIAMQPVVENFQSVILTSGTISPLEMYPKILNFTP 537
Query: 476 VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGI 535
V+++S MSL RDC+CP+++ +G++QL +ST++++R+D V RNYG LL+E+ +PDG+
Sbjct: 538 VLTQSLPMSLDRDCLCPLIVAKGANQLQMSTRYELRNDVTVLRNYGTLLIELCKHIPDGV 597
Query: 536 VCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAV 595
VCFF SY+YM+ I++ W + GI+ IM+HKL+F+ET+DVV TT+AL NYRKACD GRGA+
Sbjct: 598 VCFFPSYAYMELIVSHWYECGIIASIMEHKLIFMETKDVVTTTMALHNYRKACDVGRGAL 657
Query: 596 FFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
F S+ RGKVAEGIDFDRHYGR VI+ GVPFQYTLS+
Sbjct: 658 FLSICRGKVAEGIDFDRHYGRCVILIGVPFQYTLSR 693
>gi|449016631|dbj|BAM80033.1| nucleotide excision repair protein XP-D [Cyanidioschyzon merolae
strain 10D]
Length = 746
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 304/664 (45%), Positives = 424/664 (63%), Gaps = 48/664 (7%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MI +ED+ V FPY YPEQ YM LKRALDA GH ++EMP+GTGKT+++LSL +SY+
Sbjct: 1 MIVDIEDLAVNFPYREPYPEQLQYMRSLKRALDAGGHAVIEMPSGTGKTVSILSLASSYI 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
P KL+YCTRTV EMEK LAE K L + G +++L +GL++R +LCV
Sbjct: 61 SRWPLVYRKLVYCTRTVEEMEKVLAEAKRLFATMQANRGDPSELLCVGLAARSHLCVLEE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAEN----------PNIETCEFFENYEKAASAA-V 169
L N V++ACR TASWVR A ++ P + C F+E + AAS +
Sbjct: 121 AL--HNPRGVESACRALTASWVRERAYQSTDHGHQVDIPPGL--CPFYERFSSAASQNFI 176
Query: 170 LPPGV-YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
LP G Y++ DLR FG + GWCPYFLAR MV FA++VVYSYQY+LDP+V+ ++S + +
Sbjct: 177 LPAGAAYSISDLREFGARVGWCPYFLARQMVPFAHIVVYSYQYILDPRVSRVVSSDFGPD 236
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRL 288
+++VFDEAHNIDNVC EA SV + Q L+ A RNL+ ++ + K RL EY RL
Sbjct: 237 TIIVFDEAHNIDNVCTEAFSVQLNDQLLQCAARNLNTLSSRVHEMKRRGVERLHQEYERL 296
Query: 289 VEGLA-------LRGNLPIADAWLSNPALPSDILKEA------VPGNIR--------RAE 327
G++ LR ++ IA L ALPS +++ A +P +R
Sbjct: 297 AWGISTADRESQLR-DMQIAG--LDPSALPSLVVESAPDASAMIPDQMRISLCPEIQSTV 353
Query: 328 HFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLE 387
FL LR+++ Y++ +++ + +E ++ +++ L+ +RL SL+ LE
Sbjct: 354 GFLQFLRQILSYVQELVDSNLIMEETAQRMALAVCHRLSTERRALQLASDRLVSLLWALE 413
Query: 388 ITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPV 447
I+D F +Q + DF TL+GTY+ GF +I +P +ER+ H L+C DASLA++PV
Sbjct: 414 ISDVAAFSPLQKLSDFCTLLGTYSAGFVVINDP-EERIFH-------LACLDASLAMRPV 465
Query: 448 FDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTK 507
RF+SVVITSGTLSP+ YPRLL F ++ SF MSL R C+CP+++TRG DQ P+S++
Sbjct: 466 LTRFKSVVITSGTLSPLWFYPRLLTFRAAIAESFPMSLERACLCPLIVTRGVDQSPISSQ 525
Query: 508 FDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLV 567
+ R + +ARNYG+LL+ M IVPDG+VCFF SY +M +I++ W +S IL+ + + KL
Sbjct: 526 YSTRKEISIARNYGELLLNMADIVPDGVVCFFPSYEFMHDIVSQWVESDILQRLQKLKLT 585
Query: 568 FIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQY 627
F+ETQD VE LA+ +YR ACD GRGAV SVARG+ AEGIDFD HYGR ++FGVPFQY
Sbjct: 586 FVETQDAVEAGLAIKHYRMACDAGRGAVLLSVARGRAAEGIDFDNHYGRCALLFGVPFQY 645
Query: 628 TLSK 631
+ S+
Sbjct: 646 SESR 649
>gi|12835975|dbj|BAB23443.1| unnamed protein product [Mus musculus]
Length = 593
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/462 (57%), Positives = 352/462 (76%)
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
LP G+Y L DL+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++
Sbjct: 3 LPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKA 62
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
VVVFDEAHNIDNVCI+++SV++ R+TL+ NL + + + R K TD RLR E RLV
Sbjct: 63 VVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDECRRLV 122
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
EGL DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V
Sbjct: 123 EGLREASVARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHV 182
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
+E P +F++ + I +K LRFC ERL SL+ TLEI D +F + + +FATLV T
Sbjct: 183 VQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVST 242
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
Y +GF+IIIEPFD+R P I +PVL SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP+
Sbjct: 243 YAKGFTIIIEPFDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPK 302
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
+L+FHPV +F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM +
Sbjct: 303 ILDFHPVTMATFTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSA 362
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
+VPDGIV FF SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+
Sbjct: 363 VVPDGIVAFFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACE 422
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGA+ SVARGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 423 NGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 464
>gi|322707662|gb|EFY99240.1| DNA repair helicase RAD3 [Metarhizium anisopliae ARSEF 23]
Length = 716
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 264/555 (47%), Positives = 375/555 (67%)
Query: 77 VHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRK 136
+ E+EK L ELK L Y+T LG +GL+SRKNLC++ V ++ VDA CR
Sbjct: 1 MSEIEKALVELKALMKYRTEQLGYEEDFRGLGLTSRKNLCLHPSVKREKSGSVVDARCRS 60
Query: 137 RTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLAR 196
TA +V+ N+ C + +N + ++P GV+T + +G++ CPYF AR
Sbjct: 61 LTAGFVKEKKDRGENVAVCVYHDNLDLLEPHNLIPNGVWTFDGILRYGEEHKQCPYFTAR 120
Query: 197 HMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTL 256
M+Q+ NVV++SY YLLDPK+A +S++ K+ +VVFDEAHNIDNVCIEALS + +L
Sbjct: 121 RMMQYCNVVIFSYHYLLDPKIAERVSRDFSKDCIVVFDEAHNIDNVCIEALSTDITEDSL 180
Query: 257 EGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILK 316
A+R + +I + TD +L+ EY +LV+GL DA+++NPALP D+L+
Sbjct: 181 RRASRGAQNLEHKITEMRDTDQEQLQNEYQKLVQGLREADEARQEDAFMANPALPEDLLR 240
Query: 317 EAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCY 376
EAVPGNIRRAEHF+ L+R ++YL+ R++ V E P SF+A + H I++K LRFC
Sbjct: 241 EAVPGNIRRAEHFVAFLKRFIEYLKTRMKVRQVISETPPSFLAHLKEHTFIEKKPLRFCA 300
Query: 377 ERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLS 436
ERL SL+ TLE+T+ +++ +Q + FATLV TY +GF +I+EPF+ +P+P+L +
Sbjct: 301 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPFESDTAEVPNPILHFT 360
Query: 437 CHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLT 496
C DA++A++PVF+RF SV+ITSGT+SP+++YP++L+F V+ S+ M+L R PM++T
Sbjct: 361 CLDAAIAIRPVFERFYSVIITSGTISPLEMYPKMLDFSTVIQESYSMTLARRSFLPMIVT 420
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG 556
RGSDQ +ST F +R++P V RNYG LL+E I PDG+V FF SY YM+ II+ W G
Sbjct: 421 RGSDQASISTSFQVRNEPSVVRNYGTLLIEFAKITPDGLVVFFPSYLYMESIISMWQGMG 480
Query: 557 ILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGR 616
IL E+ ++KL+ +ET D ET+LAL+ YR AC GRGA+ VARGKV+EGIDFD YGR
Sbjct: 481 ILDEVWKYKLILVETPDAQETSLALETYRTACCNGRGAILLCVARGKVSEGIDFDHQYGR 540
Query: 617 LVIMFGVPFQYTLSK 631
V+ GVPFQYT S+
Sbjct: 541 TVLCIGVPFQYTESR 555
>gi|169612700|ref|XP_001799767.1| hypothetical protein SNOG_09475 [Phaeosphaeria nodorum SN15]
gi|160702563|gb|EAT82740.2| hypothetical protein SNOG_09475 [Phaeosphaeria nodorum SN15]
Length = 724
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 265/555 (47%), Positives = 383/555 (69%)
Query: 77 VHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRK 136
+ E+EK LAELK L Y+T+ LG + +GL+SRKNLC++ V ++ VD+ CR
Sbjct: 1 MSEIEKALAELKNLMKYRTKELGYEEEFRGLGLTSRKNLCLHPTVKREKSGTVVDSKCRS 60
Query: 137 RTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLAR 196
TA +V+ +++ C + +N + ++PPGV+T L +G++ CPYF AR
Sbjct: 61 LTAGFVKEKKERGEDVDLCVYHDNLDLLEPHNLVPPGVFTFDGLLKYGEKHKQCPYFSAR 120
Query: 197 HMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTL 256
M+ + NV++YSY YLLDPK+A +SKE+ K+ +VVFDEAHNIDNVCIE+LS+ + +L
Sbjct: 121 RMMAYCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNIDNVCIESLSIDITEDSL 180
Query: 257 EGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILK 316
AT+ ++ ++++I K TDA +L++EY +LVEGL D +++NPALP D+L
Sbjct: 181 RKATKGVNNLDRKITEMKTTDAEKLQSEYAKLVEGLRTADEARQEDTFMANPALPDDLLT 240
Query: 317 EAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCY 376
EAVPGNIRRAEHF+ L+R ++YL+ R++ +V E P SF+ + I++K LRFC
Sbjct: 241 EAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLHVISETPPSFLQHLRDLTFIEKKPLRFCA 300
Query: 377 ERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLS 436
ERL SL+ TLE+T+ +++ +Q I FATLV TY GF +I+EPF+ +P+PVL +
Sbjct: 301 ERLTSLVRTLELTNIEDYQPLQDIATFATLVATYETGFLLILEPFESATATVPNPVLHFT 360
Query: 437 CHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLT 496
C DA++A+KPVF+RF SV++TSGT+SP+D+YPR+LNF+ VV SF M+LTR PM++
Sbjct: 361 CLDAAIAIKPVFERFYSVIVTSGTMSPLDMYPRMLNFNTVVQESFTMTLTRKTFLPMIVD 420
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG 556
RG+DQ ++++F+ R+D V RN+G LL+E + PDG+V FF SY YM+ II+ W
Sbjct: 421 RGNDQNQITSQFEHRNDLQVQRNFGTLLIEFCKLTPDGVVVFFPSYLYMESIISAWQGME 480
Query: 557 ILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGR 616
IL + ++KL+ +ET D ET LAL+ +R AC+ GRGAV VARGKV+EGIDFD HYGR
Sbjct: 481 ILDTVWKYKLILVETPDAQETALALETFRTACNNGRGAVLLCVARGKVSEGIDFDHHYGR 540
Query: 617 LVIMFGVPFQYTLSK 631
V+ GVP+QYT S+
Sbjct: 541 TVLCMGVPYQYTESR 555
>gi|322692960|gb|EFY84841.1| DNA repair helicase RAD3 [Metarhizium acridum CQMa 102]
Length = 716
Score = 567 bits (1460), Expect = e-158, Method: Compositional matrix adjust.
Identities = 263/555 (47%), Positives = 373/555 (67%)
Query: 77 VHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRK 136
+ E+EK L ELK L Y+T LG +GL+SRKNLC++ V ++ VDA CR
Sbjct: 1 MSEIEKALVELKALMKYRTEQLGFEEDFRGLGLTSRKNLCLHPSVKREKSGSVVDARCRS 60
Query: 137 RTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLAR 196
TA +V+ N++ C + +N + ++P GV+T + G++ CPYF AR
Sbjct: 61 LTAGFVKEKKDRGENVDVCIYHDNLDLLEPHNLIPNGVWTFDGILRHGEEHKQCPYFTAR 120
Query: 197 HMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTL 256
M+Q+ NVV++SY YLLDPK+A +S++ K+ +VVFDEAHNIDNVCIEALS + +L
Sbjct: 121 RMMQYCNVVIFSYHYLLDPKIAERVSRDFSKDCIVVFDEAHNIDNVCIEALSTDITEDSL 180
Query: 257 EGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILK 316
A+R + +I + TD +L+ EY +LV+GL DA+++NP LP D+L+
Sbjct: 181 RRASRGAQNLEHKITEMRDTDQEQLQNEYQKLVQGLREADEARQEDAFMANPTLPEDLLR 240
Query: 317 EAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCY 376
EAVPGNIRRAEHF+ L+R ++YL+ R++ V E P SF+A + H I++K LRFC
Sbjct: 241 EAVPGNIRRAEHFVAFLKRFIEYLKTRMKVRQVISETPPSFLAHLKEHTFIEKKPLRFCA 300
Query: 377 ERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLS 436
ERL SL+ TLE+T+ +++ +Q + FATLV TY +GF +I EPF+ +P+P+L +
Sbjct: 301 ERLTSLVRTLELTNVEDYQPLQEVATFATLVATYEKGFLLIFEPFESDTAEVPNPILHFT 360
Query: 437 CHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLT 496
C DA++A++PVF+RF SV+ITSGT+SP+++YP++L+F V+ S+ M+L R PM++T
Sbjct: 361 CLDAAIAIRPVFERFYSVIITSGTISPLEMYPKMLDFSTVIQESYSMTLARRSFLPMIVT 420
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG 556
RGSDQ +ST F +R++P V RNYG LL+E I PDG+V FF SY YM+ II+ W G
Sbjct: 421 RGSDQASISTSFQVRNEPSVVRNYGTLLIEFAKITPDGLVVFFPSYLYMESIISMWQGMG 480
Query: 557 ILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGR 616
IL E+ ++KL+ +ET D ET+LAL+ YR AC GRGA+ VARGKV+EGIDFD YGR
Sbjct: 481 ILDEVWKYKLILVETPDAQETSLALETYRTACCNGRGAILLCVARGKVSEGIDFDHQYGR 540
Query: 617 LVIMFGVPFQYTLSK 631
V+ GVPFQYT S+
Sbjct: 541 TVLCIGVPFQYTESR 555
>gi|452822467|gb|EME29486.1| DNA excision repair protein ERCC-2 [Galdieria sulphuraria]
Length = 747
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 297/648 (45%), Positives = 424/648 (65%), Gaps = 18/648 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F+L+ + VYFPY ++YPEQ SYM +LK+ALDAKGH +LEMP+GTGKTI LLSL+TSY+
Sbjct: 1 MKFQLDGLNVYFPYAHVYPEQLSYMNQLKKALDAKGHAVLEMPSGTGKTITLLSLLTSYL 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLL-HNYQTRHLGPAAKILAIGLSSRKNLCVNS 119
L + K+IYCTRTV EMEK + E +L H Q L IGL+SRK+LC+N
Sbjct: 61 LQTQPSVRKIIYCTRTVEEMEKVMEEANILYHCLQQEKEVVDGWFLCIGLASRKHLCLNE 120
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY---EKAASAAVLPPGVYT 176
+V++ VD CR TASW+R A +P I C + +K ++P GVY+
Sbjct: 121 QVVSCGEGFLVDGRCRSLTASWIREKAKNDPTIPKCNYMMTLWCNQKQVDEMIIPCGVYS 180
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPK----VAGIISKEMQKESVVV 232
LQDLR +G+Q G CPYF +R ++ FAN++VYSY YLLDPK V+ ++S+E+ ++++VV
Sbjct: 181 LQDLRRWGEQNGCCPYFYSRRLLAFANLIVYSYHYLLDPKYRVEVSQLVSRELPQDAIVV 240
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGL 292
FDEAHNIDNVCIEALSV V R T++ A ++ + K L+ EY L G
Sbjct: 241 FDEAHNIDNVCIEALSVWVNRNTIDDANNAAMQLAHRVVHAKGQSLAMLQQEYQNLTRGQ 300
Query: 293 ALRGNLP---IADAW----LSNPALPS--DILKEAVPGNIRRAEHFLHVLRRLVQYLRGR 343
+ L ++ W ++ P++ L+E VP +IR+AEHF+ L+ L+ Y++
Sbjct: 301 TIHHGLTSSTLSVNWSEWEMAQPSIHDVHQTLEETVPPSIRKAEHFIAYLQSLIAYIKNL 360
Query: 344 LETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDF 403
L + F+ + ++ K+ RF +RL SL+ TLEI D F + ++ +
Sbjct: 361 LNRPEALEMTHNQFLQDFSKECPVEVKSFRFTSDRLSSLLRTLEIGDWSRFRSLASVAEM 420
Query: 404 ATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSP 463
T+ TY+ GF+II+EPF+ + HI PVLQL+C DASLA+ PV +F++V+ITSGTLSP
Sbjct: 421 ITIASTYSSGFAIILEPFETK-THIWSPVLQLACLDASLAMMPVTRKFRNVIITSGTLSP 479
Query: 464 IDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKL 523
+D YPR+LNF ++ SF MSL R C+ P+++ G +++ +++KF+ R + V ++YG++
Sbjct: 480 LDFYPRMLNFRAAITASFNMSLNRRCVLPLIIGMGENRVLLTSKFNQRGELQVPKSYGRI 539
Query: 524 LVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDN 583
L+E+ +VPDGIV FF SY YM+ + W ++ +L E+ KL+FIET D E++LAL N
Sbjct: 540 LIEISKLVPDGIVGFFPSYEYMELALDVWKENNVLDELQAMKLLFIETSDGAESSLALRN 599
Query: 584 YRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+R ACD GRGA+F SVARGK AEGIDFD HYGR V++FG+PFQYT S+
Sbjct: 600 FRTACDIGRGAIFLSVARGKAAEGIDFDHHYGRCVLLFGMPFQYTESR 647
>gi|342182871|emb|CCC92351.1| putative DNA excision repair protein, Transcription factor II H
complex, XPD subunit [Trypanosoma congolense IL3000]
Length = 811
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 288/648 (44%), Positives = 417/648 (64%), Gaps = 35/648 (5%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +EDV V FPY+ IYPEQ YM ELKR LD GH +LEMP+GTGKT LLSL+ +YV
Sbjct: 1 MKLFIEDVPVLFPYEYIYPEQLEYMTELKRGLDQGGHMVLEMPSGTGKTTTLLSLLIAYV 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQTRHLGPAAKIL-AIGLSSRKNLCVN 118
+ K++YCTRTV E++KT++EL K+L + G A++ L + L+++KNLC
Sbjct: 61 HHHADEKRKVVYCTRTVGEVDKTVSELSKILKLWDAE--GTASRPLRGVCLTAKKNLCTE 118
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
V + ++ D VDA CR TA W + C +F+N E + LPPG Y++
Sbjct: 119 PSVESTKSLDEVDAGCRSLTAPWQVN--------QRCVYFDNLEN--NGFDLPPGAYSVG 168
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
DL+ G++ CPY+LAR ++ A++VV+S+ Y++DP VA + + M + ++VV DEAHN
Sbjct: 169 DLKRLGRKHRVCPYYLARKALKIADIVVHSFLYIVDPIVAEVTKEYMNENTIVVMDEAHN 228
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLAL---- 294
+D+VC+E +S+ + ++ A N+ R+ ++R KAT+ +L+ EY+RLV GLA+
Sbjct: 229 VDDVCVEVMSLVITKEDAAQAKENVKRLGDAVDRMKATNRQKLQEEYDRLVNGLAMAQMA 288
Query: 295 RGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYL-RGRLETENVEKEG 353
R A + PA+P DI +EA+PG++R+A HFL ++RLV + R
Sbjct: 289 RAAGSNTTASVHVPAIPQDIAEEAIPGSLRQANHFLAFMQRLVDFTHRVVCRISRTYVAD 348
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICD-FATLVGTYTR 412
P++F+ + ID + LR+ ERL LM TL+IT++ + ++ I F TL YT
Sbjct: 349 PLTFLTKVKEECSIDVRHLRYLTERLKVLMNTLQITNSHNYRNVSLIAHMFMTLSTHYTD 408
Query: 413 ------GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDL 466
GF ++ E D P IPDPV++L C DASLA++ VF +++SV++TSGTLSP+D+
Sbjct: 409 DRYEKPGFVVVCEASDPTRPSIPDPVVRLVCVDASLALREVFSKYRSVILTSGTLSPLDI 468
Query: 467 YPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQL-----PVSTKFDMRSDP----GVA 517
YP++L F PV+++SF+M+L+R CI P+V+TR S+ + V++ F +R DP V+
Sbjct: 469 YPKMLGFSPVIAKSFQMTLSRKCIAPVVVTRSSESVNITAEEVTSSFAVRKDPEAQATVS 528
Query: 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVET 577
Y LL + VPDGIVCFF Y YM E++ W SG LKE+ HKL+F+ETQ V ET
Sbjct: 529 AAYEDLLRGLAVTVPDGIVCFFTGYQYMSEVLLVWYRSGFLKELAHHKLIFVETQSVEET 588
Query: 578 TLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
++AL+NYR+ACD GRGAVF ++ARGK+AEGIDFD HYGR V+MFGVPF
Sbjct: 589 SVALENYRRACDIGRGAVFMAIARGKIAEGIDFDSHYGRAVVMFGVPF 636
>gi|346319590|gb|EGX89191.1| DNA repair helicase RAD3 [Cordyceps militaris CM01]
Length = 709
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 261/555 (47%), Positives = 371/555 (66%), Gaps = 8/555 (1%)
Query: 77 VHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRK 136
+ E+EK L EL+ L Y+T LG +GL+SRKNLC++ V ++ VDA CR
Sbjct: 1 MSEIEKALMELEALMKYRTEQLGYEEDFRGLGLTSRKNLCLHPSVKREKSGSVVDARCRS 60
Query: 137 RTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLAR 196
TA +V+ + N + S ++P GV+T + +G++ CPYF AR
Sbjct: 61 LTAGFVKEKKERGED--------NLDLLESHNLIPNGVWTFDGILRYGEENKQCPYFTAR 112
Query: 197 HMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTL 256
M+Q+ NVV++SY YLLDPK+A +SK+ K+ +VVFDEAHNIDNVCIE+LS + ++L
Sbjct: 113 RMMQYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNIDNVCIESLSTDITEESL 172
Query: 257 EGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILK 316
ATR + Q+I + TD +L+ EY +LV+GL DA+++NP LP ++LK
Sbjct: 173 RRATRGAQNLKQKIADMRETDQEQLQNEYEKLVQGLREADEARQEDAFMANPVLPEELLK 232
Query: 317 EAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCY 376
EAVPGNIRRAEHF+ L+R ++YL+ R++ V E P SF+A + H I++K L FC
Sbjct: 233 EAVPGNIRRAEHFVSFLQRFIEYLKTRMKVRQVISETPPSFLAHLKEHTFIEKKPLGFCA 292
Query: 377 ERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLS 436
ERL SL+ TLE+T+ +++ +Q + FATLV TY +GF +I+EP++ +P+P+L +
Sbjct: 293 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPYESDTAEVPNPILHFT 352
Query: 437 CHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLT 496
C DA++A++P+FDRF SV+ITSGT+SP+++YP++L+F V+ S+ M+L R PM++T
Sbjct: 353 CLDAAIAIRPIFDRFYSVIITSGTISPLEMYPKMLDFSTVIQESYSMTLARRSFLPMIVT 412
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG 556
RGSDQ +ST F +R++P V RNYG LL E I PDG+V FF SY YM+ II+ W G
Sbjct: 413 RGSDQASISTSFQVRNEPSVVRNYGNLLTEFAKITPDGLVVFFPSYLYMESIISMWQGMG 472
Query: 557 ILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGR 616
IL E+ ++KL+ +ET D ET+LAL+ YR AC GRGA+ VARGKV+EGIDFD YGR
Sbjct: 473 ILDEVWKYKLILVETPDAQETSLALETYRTACCNGRGAILLCVARGKVSEGIDFDHQYGR 532
Query: 617 LVIMFGVPFQYTLSK 631
V+ GVPFQYT S+
Sbjct: 533 TVLCIGVPFQYTESR 547
>gi|71410154|ref|XP_807386.1| TFIIH basal transcription factor complex helicase subunit
[Trypanosoma cruzi strain CL Brener]
gi|70871375|gb|EAN85535.1| TFIIH basal transcription factor complex helicase subunit, putative
[Trypanosoma cruzi]
Length = 804
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 279/642 (43%), Positives = 412/642 (64%), Gaps = 31/642 (4%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
+EDV V FPY+ IYPEQ YM ELK+ LD GH +LEMP+GTGKT LLSL+ +Y+
Sbjct: 5 IEDVLVLFPYEYIYPEQLEYMTELKKGLDQGGHIVLEMPSGTGKTTTLLSLLIAYIHYHA 64
Query: 65 ENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLA 123
+ K+IYCTRTV EM KT+ EL KLL + T LG + + L+++KNLC+ S V +
Sbjct: 65 DEKRKVIYCTRTVEEMTKTMGELRKLLELWNTDELGSNRPLRGLCLTAKKNLCIESTVAS 124
Query: 124 AENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAF 183
+ VDA CR TA W + C +F+N E+ LPPG Y+++DL+ F
Sbjct: 125 QRYPEDVDAGCRSLTAPWQTS--------NRCAYFDNLERIPFE--LPPGAYSVEDLKQF 174
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G+ CPY+L R ++ ++VV+S+ Y++DP VA + + ++VV DE HN+D+VC
Sbjct: 175 GEAHQLCPYYLVRKALRVVDIVVHSFLYIVDPIVAEVTKGYFNENAIVVMDEGHNVDDVC 234
Query: 244 IEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADA 303
IEA+S+ + ++ A N+ +N + KAT+ +L+ EY+RLV GLA+ D+
Sbjct: 235 IEAMSLIITKEDAAQAKENVKLLNAAADHLKATNRQQLQDEYDRLVNGLAMVEMARSVDS 294
Query: 304 WL---SNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYL-RGRLETENVEKEGPVSFVA 359
+ P++PS+I +EA+PG++R+A HFL ++RLV + R P++F++
Sbjct: 295 MMMPVQAPSIPSEIAEEAIPGSLRQANHFLSFIQRLVDFTHRVVCRISRTYVADPLTFLS 354
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICD-FATLVGTYTR------ 412
+ +D + R+ ERL LM TL+IT++ +F ++ I + TL YT
Sbjct: 355 KVRDECAVDIRHFRYLTERLKVLMNTLQITNSHKFRNVSLIAQMYMTLSTHYTDDRYEKP 414
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
GF ++ E D P +PDPV++L C DASLA++ F +++SVV+TSGTLSP+D+YP++L
Sbjct: 415 GFVVVCEAHDPTRPAVPDPVIRLVCVDASLALREAFSKYRSVVLTSGTLSPLDIYPKILG 474
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQL-----PVSTKFDMRSDPG----VARNYGKL 523
F PV+++SF+M+L+R CI P+V+TR ++ + +++ F +R++P V+ Y L
Sbjct: 475 FTPVIAKSFQMTLSRKCIAPVVVTRSTESVNITMEEITSSFVVRTNPLAQDIVSSAYEDL 534
Query: 524 LVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDN 583
L + VPDGIVCFF Y YM E++ W+ SG LKE+ Q+KL+FIETQ V ET++AL N
Sbjct: 535 LRGLGKTVPDGIVCFFTGYQYMGEVLLGWHRSGFLKELAQYKLIFIETQSVEETSIALAN 594
Query: 584 YRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
YR+ACD GRGA+F ++ARGK+AEGIDFDRHYGR V+MFGVPF
Sbjct: 595 YRRACDIGRGAIFMAIARGKIAEGIDFDRHYGRAVVMFGVPF 636
>gi|170068974|ref|XP_001869063.1| TFIIH basal transcription factor complex helicase subunit [Culex
quinquefasciatus]
gi|167864971|gb|EDS28354.1| TFIIH basal transcription factor complex helicase subunit [Culex
quinquefasciatus]
Length = 542
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 257/491 (52%), Positives = 349/491 (71%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
++ + VYFPY+ IYPEQY+YMLELKR DAKGHCLLEMP+GTGKT LLSLI +Y++ P
Sbjct: 50 VDGLLVYFPYEYIYPEQYAYMLELKRTFDAKGHCLLEMPSGTGKTTTLLSLIVAYIMENP 109
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
KLIYC+RTV E+EK +AELK L NY + G I + LSSRKN+C++S V
Sbjct: 110 HIVRKLIYCSRTVPEIEKVIAELKHLMNYYEKQTGVMPNITGLVLSSRKNMCIHSEVSKE 169
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFG 184
+ VDA C TAS+VR AA + ++ C++FE ++ LPPGVY++ D++ FG
Sbjct: 170 RDGKIVDAKCYGMTASYVRDRAATDDSVPICQYFEGFQAEGKETTLPPGVYSIDDMKEFG 229
Query: 185 KQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCI 244
+++ WCPYF++R + A+VVVYSY YLLDPK+A ++SKE+ +ESVVV DEAHNIDNVC+
Sbjct: 230 RERNWCPYFMSRFAINQAHVVVYSYHYLLDPKIAEVVSKELARESVVVCDEAHNIDNVCV 289
Query: 245 EALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAW 304
+++SV + R+ +E +T + + + + K D RL EY RLV+GL D
Sbjct: 290 DSMSVKINRRLIEKSTTGVHTLEKYVAEMKDDDRRRLNDEYLRLVQGLKDAAMQRETDMV 349
Query: 305 LSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAH 364
L+NPALPS+ILKE VPGNIR A+HFL L+R ++Y++ RL ++V +E P F+ I
Sbjct: 350 LANPALPSEILKEVVPGNIRNADHFLSFLKRFIEYIKSRLRVQHVVQESPAGFLKDIQQK 409
Query: 365 AGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDER 424
I++K LRFC ERL SL+ TLEITD EF + I FATLV +YT+GF+IIIEPFD++
Sbjct: 410 VCIERKPLRFCAERLSSLLRTLEITDLTEFGPLTVITSFATLVSSYTKGFTIIIEPFDDK 469
Query: 425 MPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS 484
P + +P++ LSC D+S+A+KP+F RFQSVVITSGTLSP+D+YP++L+F PVV SF M+
Sbjct: 470 TPTVSNPIMHLSCMDSSIAMKPIFQRFQSVVITSGTLSPMDMYPKILDFEPVVMSSFTMT 529
Query: 485 LTRDCICPMVL 495
L R C+ PM+L
Sbjct: 530 LARPCLLPMIL 540
>gi|303389494|ref|XP_003072979.1| Rad3/XPD DNA repair helicase [Encephalitozoon intestinalis ATCC
50506]
gi|303302123|gb|ADM11619.1| Rad3/XPD DNA repair helicase [Encephalitozoon intestinalis ATCC
50506]
Length = 743
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 286/651 (43%), Positives = 420/651 (64%), Gaps = 46/651 (7%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++++V VYFPYD++YPEQ YM E+KR+LD GHCL+EMP+GTGKT+ALLS+ SY
Sbjct: 1 MKIQIDEVLVYFPYDSVYPEQLKYMREVKRSLDNNGHCLIEMPSGTGKTVALLSMTISYQ 60
Query: 61 L---SKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCV 117
L SK N K+IYC+RTV E+EK L EL + Y +H + L +GL+SRKNLC+
Sbjct: 61 LYMKSKNTN-FKIIYCSRTVSEVEKALKELDGVVGYIKKH--RPFEFLGLGLTSRKNLCL 117
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
N L + N VD +CR+ V L+ C+FFEN S +P VY
Sbjct: 118 NKAALKSFN---VDVSCRR----LVNRLSESR-----CDFFENLN---SFHEVPVAVYDF 162
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
L+ G+++G CPY+L R + + ++Y Y YL+DP++ I+SKE+ SVV+FDEAH
Sbjct: 163 SQLKEIGEKKGICPYYLVRRSIPVCDCIIYPYNYLIDPRIYTIVSKELGPNSVVIFDEAH 222
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGN 297
NID+ CIE +S+ ++R LEGA+R + + + + + K + AG+ A+Y ++ E L
Sbjct: 223 NIDSHCIEVMSIEIKRNILEGASRAIRNL-ENLLKEKGSAAGKESAQYEQMKEKLVE--- 278
Query: 298 LPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
P+ D+ A E +PGN+R + HF+ L+R+ ++ + +L+T ++ E SF
Sbjct: 279 -PVIDSIPYFYATGEGNY-EFIPGNLRNSFHFVSALKRIAEFFKTKLKTTHLTTESTESF 336
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
SI + +++K LRFC +RL L +L I D D H++T+ DF+T+V Y++GF +I
Sbjct: 337 CKSIKELSFVEKKALRFCSQRLGMLSQSLGIDDED-MGHLKTVADFSTMVSMYSKGFVVI 395
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
EPFD + P + +P L+L+C D+S+A+ VF RF++V+ITSGT+SPID+YP++LNF P
Sbjct: 396 FEPFDSQAPTVFNPTLRLACLDSSIAMSSVFRRFRNVIITSGTMSPIDMYPKILNFVPSR 455
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQL------------------PVSTKFDMRSDPGVARN 519
+L R+ I P+++T+G+DQ+ ++T F +RSDP V RN
Sbjct: 456 IAEIGATLDRNSISPLIITKGNDQMTLRALSEDVEAVDTHKNDSLTTSFSLRSDPSVVRN 515
Query: 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTL 579
YG L+VE+ +VPDGIVCFF SY YM+EI++ W ++ I+ EI ++KLVF+ET D ET +
Sbjct: 516 YGHLMVELSKVVPDGIVCFFPSYMYMEEIVSLWAETNIISEISKNKLVFVETPDGRETEM 575
Query: 580 ALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
AL NY++AC+ GRG + FSVARGKV+EG+DF+ YGR V+M GVPFQYT S
Sbjct: 576 ALANYKRACNNGRGGMLFSVARGKVSEGVDFEDGYGRCVVMLGVPFQYTES 626
>gi|396081490|gb|AFN83106.1| Rad3/XPD DNA repair helicase [Encephalitozoon romaleae SJ-2008]
Length = 743
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 284/650 (43%), Positives = 416/650 (64%), Gaps = 44/650 (6%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++++V VYFPYD++YPEQ YM E+KR+LD +GHCLLEMP+GTGKT+ALLS+ SY
Sbjct: 1 MKIQIDEVLVYFPYDSVYPEQLKYMREIKRSLDNRGHCLLEMPSGTGKTVALLSMTISYQ 60
Query: 61 LS-KPENP-VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVN 118
L K +N K++YC+RTV E+EK L EL + +Y +H + L +GL+ RKNLC+N
Sbjct: 61 LHMKAKNDHFKIVYCSRTVPEVEKALRELDGVVSYIKKH--RPIEFLGLGLTGRKNLCIN 118
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
+ N VD ACR+ V L C+F+EN +P VY
Sbjct: 119 KVAFKSFN---VDVACRR----LVNRLGESR-----CDFYENLNNFNE---VPVAVYDFS 163
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L+ G+++G CPY+L R + + ++Y Y YL+DP++ I+SKE+ SVV+FDEAHN
Sbjct: 164 RLKEIGEKKGICPYYLVRRSIPVCDCIIYPYNYLIDPRIYSIVSKELGPNSVVIFDEAHN 223
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
ID+ CIE LS+ ++R LEGATR + + + + R K G A+Y ++ E +
Sbjct: 224 IDSHCIEVLSIEIKRNILEGATRAIKNL-ENLLRQKGPTTGEESAQYEKMKEKI----RE 278
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
P+AD+ A + E +PGN+R + HF+ L+R+ ++ + +L+T ++ E SF
Sbjct: 279 PVADSIPYFYA-TGEGSYEFIPGNLRNSYHFISALKRITEFFKTKLKTTHLTTESTESFC 337
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
SI + I +K LRFC +RL L +L + D D H++T+ DF+T+V Y++GF +I
Sbjct: 338 KSIKELSFIGKKALRFCSQRLGMLSQSLGLDDED-MTHLKTVADFSTMVSMYSKGFVVIF 396
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EPFD + + +P L+L+C D+S+A+ VF RF++V+ITSGT+SPID+YP++LNF P +
Sbjct: 397 EPFDSQASTVFNPTLRLACLDSSIAMSSVFARFRNVIITSGTMSPIDMYPKILNFVPSRT 456
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPV------------------STKFDMRSDPGVARNY 520
+L R+ I P+++T+G+DQ+ + +T F +RSDP V RNY
Sbjct: 457 AEIGATLERNSISPLIITKGNDQMTLRALSEDIETTDKCNSDMLTTSFSLRSDPSVVRNY 516
Query: 521 GKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA 580
G L++E+ +VPDGIVCFF SY YM+EI++ W ++ I+ EI ++KLVF+ET D ET +A
Sbjct: 517 GHLMIELSRVVPDGIVCFFPSYMYMEEIVSLWAETNIINEINKNKLVFVETPDGRETEMA 576
Query: 581 LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
L NYR+ACD GRG + FSVARGKV+EG+DF+ YGR V+M GVPFQYT S
Sbjct: 577 LSNYRRACDNGRGGMLFSVARGKVSEGVDFEDGYGRCVVMLGVPFQYTES 626
>gi|118376302|ref|XP_001021333.1| DNA repair helicase [Tetrahymena thermophila]
gi|89303100|gb|EAS01088.1| DNA repair helicase [Tetrahymena thermophila SB210]
Length = 807
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 261/609 (42%), Positives = 402/609 (66%), Gaps = 30/609 (4%)
Query: 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK-LLHNY 93
KGH ++EMPTGTGKT++LL+LITSY+ S + KLIYCTRTV EMEKT+ E+K +L N
Sbjct: 2 KGHGIIEMPTGTGKTVSLLALITSYLESNQDKFKKLIYCTRTVVEMEKTIEEVKFILDNR 61
Query: 94 QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA--------- 144
+ K L GLS+R NLC++ V ++RD VDA C+K TA WVRA
Sbjct: 62 KQEKPEEQFKFLCTGLSARSNLCIHPNVSRQQSRDRVDAECKKLTAPWVRAQSFEKSSRD 121
Query: 145 -------LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARH 197
+ ++ +E C+ FEN+E G+Y L+DLR +G++ CPYFLAR
Sbjct: 122 CLIILSKIQGDSDQLELCQLFENFEGKKEELKFTEGIYNLEDLRQYGEKNNICPYFLARR 181
Query: 198 MVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLE 257
++ +N++VY+Y Y+LD K+ I+ KE K+ +VVFDEAHNIDNVC+E +V + R+ L+
Sbjct: 182 LLNQSNIIVYNYMYMLDAKMTEILDKEFWKDCLVVFDEAHNIDNVCLEVFTVDINRKLLD 241
Query: 258 GATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKE 317
A +N+ + +++R + + +L +EYN+L++GL +G L ++ LPS++ E
Sbjct: 242 MAYKNIEVLGTKVDRVETINHEKLESEYNQLLQGLKNKGVLNDNQLNENSKQLPSELTAE 301
Query: 318 AVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYE 377
++P +I++A+ F+ L+++V +L+ RL+ +N + P F+ + + +D +L+ E
Sbjct: 302 SIPFHIKKAKPFIQFLKKIVIFLKNRLKEKNATTQDPPQFINDMYISSHLDSYSLKLAGE 361
Query: 378 RLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSC 437
RL+ L+ +LEIT+TDEF I TI F +L+ +Y RGF II +P + + + DP++ +C
Sbjct: 362 RLNMLLNSLEITETDEFSAIDTITHFTSLLASYARGFKIIYQP-NPKDGSLNDPLMTFAC 420
Query: 438 HDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTR 497
D SLA+ VF +F+SV++TSGT+SP+D+YP++LNF+P + P++ T+
Sbjct: 421 LDCSLAMTHVFTQFKSVILTSGTMSPLDIYPKILNFNPYTVK------------PLIATK 468
Query: 498 GSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGI 557
G D +S++++ R++ V R+YG LL+++ VPDGIV FF SY YM++II WN GI
Sbjct: 469 GIDFTQLSSEYEARANMTVTRSYGSLLIDLSKFVPDGIVAFFPSYMYMEKIIYEWNQEGI 528
Query: 558 LKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRL 617
L E+ ++KL++ E++DV +T+ +L +YRKACDCGRGA+FFS+ARGK+AEGIDF+ HYGR
Sbjct: 529 LDEMRKYKLLYFESKDVAQTSQSLFHYRKACDCGRGAIFFSIARGKIAEGIDFNEHYGRA 588
Query: 618 VIMFGVPFQ 626
V+M G P Q
Sbjct: 589 VVMVGFPVQ 597
>gi|261330675|emb|CBH13660.1| TFIIH basal transcription factor complex helicase subunit, putative
[Trypanosoma brucei gambiense DAL972]
Length = 819
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 280/647 (43%), Positives = 413/647 (63%), Gaps = 33/647 (5%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +EDV V FPY+ IYPEQ YM ELK+ LD GH +LEMP+GTGKT LLSL+ +Y+
Sbjct: 17 MKLFIEDVPVLFPYEYIYPEQLEYMTELKKGLDQGGHMVLEMPSGTGKTTTLLSLLIAYL 76
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNS 119
+ K++YCTRTV E++KT +EL K+L ++T +G + + + L+++KNLC+
Sbjct: 77 HHHADEKRKVVYCTRTVGEVDKTASELRKILGLWETEEVG-SRPLRGVCLTAKKNLCIEP 135
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
V++ + D VDA CR TA W + C +F+ E L PG Y+L D
Sbjct: 136 SVVSRRHLDDVDAGCRSLTAPW--------QTDQRCVYFDTLENQGFD--LRPGAYSLSD 185
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L+ G++ CPY+LAR ++ A++V++S+ Y++DP VA + + M + ++VV DEAHN+
Sbjct: 186 LKRLGEENHVCPYYLARKALKVADIVIHSFLYIVDPIVAEVTKEYMDENTIVVMDEAHNV 245
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLAL----R 295
D+VCIEA+S+ V + A N+ ++N+ ++R KAT+ +L+ EY+RLV GLA+ R
Sbjct: 246 DDVCIEAMSLIVTKDDAFQAKDNVKKLNEAVDRMKATNRQKLQEEYDRLVNGLAMAELAR 305
Query: 296 GNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYL-RGRLETENVEKEGP 354
A + +P DI +EA+PG++R+A HFL ++RLV + R P
Sbjct: 306 SGESTAGVSVQALNIPQDIAEEAIPGSLRQANHFLAFMQRLVDFTHRVVCRISRTYVADP 365
Query: 355 VSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICD-FATLVGTYTR- 412
++F+ + +D + LR+ ERL L+ TL+IT F ++ I F TL YT
Sbjct: 366 LTFLTKVKEECSVDVRHLRYLTERLKVLLNTLQITSAHSFHNVSLIAQMFMTLSTHYTDD 425
Query: 413 -----GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY 467
GF ++ E D P IPDPV++L C DASLA++ VF +++SV++TSGTLSP+D+Y
Sbjct: 426 RYEKPGFVVVCEASDPTRPSIPDPVIRLVCVDASLALREVFAKYRSVILTSGTLSPLDIY 485
Query: 468 PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQL-----PVSTKFDMRSDP----GVAR 518
P++L F PV+++SF+M+L+R CI P+V+TR S+ + V++ F +R +P V+
Sbjct: 486 PKMLGFSPVIAKSFQMTLSRKCIAPVVVTRSSESVNITAEEVTSSFVVRKNPEAQATVSA 545
Query: 519 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETT 578
Y LL + VPDGIVCFF Y YM E++ W+ SG LKE+ +HKL+F+ETQ V +T
Sbjct: 546 AYEDLLRGLAKTVPDGIVCFFTGYQYMSEVLLGWHRSGFLKELSRHKLIFVETQSVDDTA 605
Query: 579 LALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
AL++YR+ACD GRGA+F S+ARGK+AEGIDFD HYGR V+MFGVPF
Sbjct: 606 TALESYRRACDIGRGAIFMSIARGKIAEGIDFDSHYGRAVVMFGVPF 652
>gi|72393255|ref|XP_847428.1| TFIIH basal transcription factor complex helicase subunit
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62175150|gb|AAX69298.1| TFIIH basal transcription factor complex helicase subunit, putative
[Trypanosoma brucei]
gi|70803458|gb|AAZ13362.1| TFIIH basal transcription factor complex helicase subunit, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 819
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 280/647 (43%), Positives = 413/647 (63%), Gaps = 33/647 (5%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +EDV V FPY+ IYPEQ YM ELK+ LD GH +LEMP+GTGKT LLSL+ +Y+
Sbjct: 17 MKLFIEDVPVLFPYEYIYPEQLEYMTELKKGLDQGGHMVLEMPSGTGKTTTLLSLLIAYL 76
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNS 119
+ K++YCTRTV E++KT +EL K+L ++T +G + + + L+++KNLC+
Sbjct: 77 HHHADEKRKVVYCTRTVGEVDKTASELRKILGLWETEEVG-SRPLRGVCLTAKKNLCIEP 135
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
V++ + D VDA CR TA W + C +F+ E L PG Y+L D
Sbjct: 136 SVVSRRHLDDVDAGCRSLTAPW--------QTDQRCVYFDTLENQGFD--LRPGAYSLSD 185
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L+ G++ CPY+LAR ++ A++V++S+ Y++DP VA + + M + ++VV DEAHN+
Sbjct: 186 LKRLGEENHVCPYYLARKALKVADIVIHSFLYIVDPIVAEVTKEYMDENTIVVMDEAHNV 245
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLAL----R 295
D+VCIEA+S+ V + A N+ ++N+ ++R KAT+ +L+ EY+RLV GLA+ R
Sbjct: 246 DDVCIEAMSLIVTKDDAFQAKDNVKKLNEAVDRMKATNRQKLQEEYDRLVNGLAMAELAR 305
Query: 296 GNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYL-RGRLETENVEKEGP 354
A + +P DI +EA+PG++R+A HFL ++RLV + R P
Sbjct: 306 SGESTAGVSVQALNIPQDIAEEAIPGSLRQANHFLAFMQRLVDFTHRVVCRISRTYVADP 365
Query: 355 VSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICD-FATLVGTYTR- 412
++F+ + +D + LR+ ERL L+ TL+IT F ++ I F TL YT
Sbjct: 366 LTFLTKVKEECSVDVRHLRYLTERLKVLLNTLQITSAHSFHNVSLIAQMFMTLSTHYTDD 425
Query: 413 -----GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY 467
GF ++ E D P IPDPV++L C DASLA++ VF +++SV++TSGTLSP+D+Y
Sbjct: 426 RYEKPGFVVVCEASDPTRPTIPDPVIRLVCVDASLALREVFAKYRSVILTSGTLSPLDIY 485
Query: 468 PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQL-----PVSTKFDMRSDP----GVAR 518
P++L F PV+++SF+M+L+R CI P+V+TR S+ + V++ F +R +P V+
Sbjct: 486 PKMLGFSPVIAKSFQMTLSRKCIAPVVVTRSSESVNITAEEVTSSFVVRKNPEAQATVSA 545
Query: 519 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETT 578
Y LL + VPDGIVCFF Y YM E++ W+ SG LKE+ +HKL+F+ETQ V +T
Sbjct: 546 AYEDLLRGLAKTVPDGIVCFFTGYQYMSEVLLGWHRSGFLKELSRHKLIFVETQSVDDTA 605
Query: 579 LALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
AL++YR+ACD GRGA+F S+ARGK+AEGIDFD HYGR V+MFGVPF
Sbjct: 606 TALESYRRACDIGRGAIFMSIARGKIAEGIDFDSHYGRAVVMFGVPF 652
>gi|401826548|ref|XP_003887367.1| Rad3-like DNA repair helicase [Encephalitozoon hellem ATCC 50504]
gi|395459885|gb|AFM98386.1| Rad3-like DNA repair helicase [Encephalitozoon hellem ATCC 50504]
Length = 742
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 286/652 (43%), Positives = 420/652 (64%), Gaps = 49/652 (7%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++++V VYFPYD++YPEQ YM E+KR+LD KGHCL+EMP+GTGKT+ALLS+ SY
Sbjct: 1 MKIQIDEVLVYFPYDSVYPEQLKYMREIKRSLDNKGHCLIEMPSGTGKTVALLSMTISYQ 60
Query: 61 L-SKPENP-VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVN 118
L K +N K++YC+RTV E+EK L EL + Y +H + L +GL+ RKNLC+N
Sbjct: 61 LYMKAKNAHFKIVYCSRTVQEVEKALKELDRVVEYIKKH--RPIEFLGLGLTGRKNLCIN 118
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
AA +VD ACR+ V + C+F+EN S +P VY
Sbjct: 119 E---AASKSFNVDVACRRLINRLVES---------KCDFYENLN---SFNEVPVAVYDFS 163
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L+ G+++G CPY+L R + + ++Y Y YL+DP++ I+SKE+ +SVV+FDEAHN
Sbjct: 164 QLKEMGEKKGICPYYLVRRSIPVCDCIIYPYNYLIDPRIYAIVSKELGPDSVVIFDEAHN 223
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
ID+ CIE LS+ ++R LEGATR + N E + AG Y ++ E +
Sbjct: 224 IDSHCIEVLSIEIKRNILEGATRAIK--NLECLLKQRGPAGEESMLYEKMKEKVGE---- 277
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
P+AD+ A + E +PGN+R + HF+ L+R+ ++ + +L+T ++ E SF
Sbjct: 278 PVADSIPYFYA-TGEGNYEFIPGNLRNSFHFISALKRITEFFKTKLKTTHLTTESTESFC 336
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
SI + +++K LRFC +RL L +L + D D H++T+ DF+T+V Y++GF +I
Sbjct: 337 KSIKELSFVEKKALRFCSQRLGMLSQSLGVDDED-MGHLKTVADFSTMVSMYSKGFVVIF 395
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EPFD + + +P L+L+C D+S+A+ VF RF++V+ITSGT+SPID+YP++LNF V S
Sbjct: 396 EPFDSQASTVFNPTLRLACLDSSIAMSSVFGRFRNVIITSGTMSPIDMYPKILNF--VSS 453
Query: 479 RSFKM--SLTRDCICPMVLTRGSDQLPV------------------STKFDMRSDPGVAR 518
R+ ++ +L R+ I P+++T+G+DQ+ + +T F +RSDP V R
Sbjct: 454 RTVEIGATLDRNSISPLIITKGNDQMTLRALSDDVEATDTSNGDVLTTSFSLRSDPSVVR 513
Query: 519 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETT 578
NYG L+VE+ +VPDGIVCFF SY YM+EI++ W ++ I+ EI ++KLVF+ET D ET
Sbjct: 514 NYGHLMVELSKVVPDGIVCFFPSYMYMEEIVSLWAETNIINEISKNKLVFVETPDGRETE 573
Query: 579 LALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
+AL NY++ACD GRG + FSVARGKV+EG+DF+ YGR V+M GVPFQYT S
Sbjct: 574 IALSNYKRACDNGRGGMLFSVARGKVSEGVDFEDGYGRCVVMLGVPFQYTES 625
>gi|146088245|ref|XP_001466027.1| TFIIH basal transcription factor complex helicase subunit
[Leishmania infantum JPCM5]
gi|134070128|emb|CAM68462.1| TFIIH basal transcription factor complex helicase subunit
[Leishmania infantum JPCM5]
Length = 813
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/649 (41%), Positives = 416/649 (64%), Gaps = 39/649 (6%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +EDV V FPY+ IYPEQ Y+ ELKR LD GH +LEMP+GTGKTI+LLS++ +Y+
Sbjct: 1 MKLYVEDVLVVFPYEYIYPEQLDYITELKRGLDKGGHMVLEMPSGTGKTISLLSILVAYL 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQTR--HLGPAAKILAIGLSSRKNLCV 117
K++YCTRTV EM KT+ E+ KLL +++ L P + + L+++KNLC+
Sbjct: 61 HHHAHEKRKVVYCTRTVEEMVKTMGEMRKLLKHWEAEGEQLRP---LRGLCLTAKKNLCI 117
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
+ V + + D VDA CR TA W + C +F+ +A LPPGVY+L
Sbjct: 118 ETSVASLIHPDEVDAGCRSITAPWQQE--------GRCGYFDTLAQAPLE--LPPGVYSL 167
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
DL+ FG+Q CPY+L R + +++V+SY Y++DP V+ + + + + ++VV DE H
Sbjct: 168 DDLKDFGEQHHVCPYYLVRKALPVVDIIVHSYLYMVDPVVSEVTKEFLNENTIVVMDEGH 227
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALR-- 295
N+D+VCIEA+S+ + ++ A +N+ +++E++ KAT+ L+ EY+RLV GLA+
Sbjct: 228 NVDDVCIEAMSLILTKKDSLDAKQNMKDLSKELDHLKATNRQMLQDEYDRLVNGLAMTEM 287
Query: 296 GNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQY---LRGRLETENVEKE 352
P A + PA+P+++ + A+P ++R+A HFL ++RLV + + R+ V
Sbjct: 288 ARDPEQRALVEAPAIPANVAEGAIPASLRQANHFLAFMQRLVDFTHRIVARITRTYVAD- 346
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY-- 410
P++F+ + ++ R+ ERL L+ TL++T+ ++ + I TL+ Y
Sbjct: 347 -PLTFLTKLKEECALEISHFRYLSERLKVLLTTLQVTNAGKYRPVALIAQMYTLLSMYYT 405
Query: 411 -----TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID 465
GF ++ E FD P IPDPV++ C DASLA++ F R++SV++TSGTLSP+D
Sbjct: 406 DDRYEKPGFVVVCEAFDPTRPQIPDPVIRTVCVDASLALRDTFARYRSVILTSGTLSPMD 465
Query: 466 LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP-----VSTKFDMRSDPG----V 516
+YP++L F P +S+SF+M+L+R CI P+++TR S+ + V++ F +R++P V
Sbjct: 466 IYPKILGFTPAISKSFQMTLSRKCIAPVIVTRSSESVSITAEEVTSSFKVRTNPTAQALV 525
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVE 576
Y LL+E+ VPDG+VCFF Y YM E++ W+ SG L+++ +HKL+F+ETQ V E
Sbjct: 526 TSAYESLLLELAKTVPDGMVCFFTGYQYMGEVLLAWHSSGFLQKLAKHKLIFVETQGVEE 585
Query: 577 TTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
T++AL NYR+ACD GRGA+F S+ARGK+AEGIDFDRHYGR V+MFGVPF
Sbjct: 586 TSVALANYRRACDIGRGAIFMSIARGKIAEGIDFDRHYGRAVVMFGVPF 634
>gi|154338549|ref|XP_001565499.1| putative TFIIH basal transcription factor complex helicase subunit
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134062548|emb|CAM42411.1| putative TFIIH basal transcription factor complex helicase subunit
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 813
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 274/649 (42%), Positives = 415/649 (63%), Gaps = 39/649 (6%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +EDV V FPY+ IYPEQ Y+ ELKR LD GH +LEMP+GTGKTI+LLS++ +Y+
Sbjct: 1 MKLYVEDVLVVFPYEYIYPEQLDYITELKRGLDKGGHMVLEMPSGTGKTISLLSILVAYL 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQTR--HLGPAAKILAIGLSSRKNLCV 117
K++YCTRTV EM KT+ E+ KLL +++ L P + + L+++KNLC+
Sbjct: 61 HHHAHEKRKVVYCTRTVEEMVKTMGEMRKLLKHWEAEGEQLRP---LRGLCLTAKKNLCI 117
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
V + + D VDA CR TA W + C +++ + LPPGVY+L
Sbjct: 118 EPSVTSLIHPDKVDAGCRSITAPWQQE--------GRCGYYDTLIQGPLE--LPPGVYSL 167
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
DL+ FG+Q CPY+L R + +++V+SY Y++DP V+ + + + ++VV DE H
Sbjct: 168 DDLKDFGEQHHVCPYYLVRKALPIVDIIVHSYLYMVDPVVSEVTKAFLNENTIVVMDEGH 227
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLAL--R 295
N+D+VCIEA+S+ + ++ A +N+ +N+E++ KAT+ +L+ EY+RLV GLA+
Sbjct: 228 NVDDVCIEAMSLILTKKDSLDAKQNMKDLNKELDHLKATNRQQLQDEYDRLVNGLAMAEM 287
Query: 296 GNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQY---LRGRLETENVEKE 352
+P A + PA+P+++ + A+P ++R+A HFL ++RLV + + R+ V
Sbjct: 288 ARIPEERAVVVVPAIPANVAEGAIPASLRQANHFLVFMQRLVDFTHRIVARITRTYVAD- 346
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY-- 410
P++F+ + ++ R+ ERL L+ TL++T+T ++ + I TL+ Y
Sbjct: 347 -PLTFLTKLKEECALEISHFRYLSERLKVLLTTLQVTNTGKYRPVALIAQMYTLLSMYYT 405
Query: 411 -----TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID 465
GF ++ E FD P IPDPV++ C DASLA++ F R++SV++TSGTLSP+D
Sbjct: 406 DDRYEKPGFVVVCEAFDPTRPQIPDPVIRTVCVDASLALRDTFGRYRSVILTSGTLSPMD 465
Query: 466 LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP-----VSTKFDMRSDPG----V 516
+YP++L F P VS+SF+M+L+R CI P+++TR S+ + V++ F +R++P V
Sbjct: 466 IYPKILGFAPAVSKSFQMTLSRKCIAPVIVTRSSESVSITAEEVTSSFKVRTNPAAQALV 525
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVE 576
Y LL E+ VPDG+VCFF Y YM E++ W+ SG L+++ +HKL+F+ETQ V E
Sbjct: 526 TSAYESLLFELAKTVPDGMVCFFTGYQYMGEVLLAWHSSGFLQKLAKHKLIFVETQGVEE 585
Query: 577 TTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
T++AL NYR+ACD GRGA+F S+ARGK+AEGIDFDRHYGR VIMFGVPF
Sbjct: 586 TSVALANYRRACDIGRGAIFMSIARGKIAEGIDFDRHYGRAVIMFGVPF 634
>gi|19074270|ref|NP_585776.1| DNA REPAIR HELICASE OF THE RAD3/XPD SUBFAMILY [Encephalitozoon
cuniculi GB-M1]
gi|19068912|emb|CAD25380.1| DNA REPAIR HELICASE OF THE RAD3/XPD SUBFAMILY [Encephalitozoon
cuniculi GB-M1]
Length = 742
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 283/650 (43%), Positives = 413/650 (63%), Gaps = 45/650 (6%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +++V VYFPY ++YPEQ YM E+KR+LD KGHCL+EMP+GTGKT+ALLS+ SY
Sbjct: 1 MKIHIDEVLVYFPYSSVYPEQLKYMREVKRSLDNKGHCLIEMPSGTGKTVALLSMTISYQ 60
Query: 61 LSKPENPV--KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVN 118
L V K++YC+RTV E+EK L EL + Y +H + L +GL+ RKNLC+N
Sbjct: 61 LHMKSKNVHFKVVYCSRTVPEVEKALKELDRVVEYIKKH--RPIEFLGLGLTGRKNLCIN 118
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
L + N VD ACR+ V LA C+F+EN A +P VY
Sbjct: 119 KAALKSFN---VDVACRR----LVNKLAESK-----CDFYENL---ADFREVPVAVYDFL 163
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L+ G+++G CPY+L R + + ++Y Y YL+DP++ I+S E+ SVV+FDEAHN
Sbjct: 164 QLKEMGEKKGICPYYLVRRSIPVCDCIIYPYNYLIDPRICAIVSSELGPNSVVIFDEAHN 223
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
ID+ CIE LS+ +RR LEGA+R + + ++R K A + +Y ++ E L G +
Sbjct: 224 IDSHCIEVLSIEIRRNVLEGASRAIGNLENLLKRGKP--ASGVDIQYEKVREKLV--GPV 279
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
P + + + E +PGN+R + HF+ L+R+ ++ + +L+T ++ E SF
Sbjct: 280 PESIPYYYASGEGN---YEFLPGNLRNSFHFVSALKRITEFFKTKLKTTHLTTESTESFC 336
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
SI + +++K LRFC +RL L +L + D D H++T+ DF+T+V Y++GF +I
Sbjct: 337 KSIRELSFVEKKALRFCSQRLGMLSQSLGLDDED-MGHLKTVADFSTMVSMYSKGFVVIF 395
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EPFD + + +P L+L+C D+S+A+ PVF RF++V+ITSGT+SPID+YP++LNF P
Sbjct: 396 EPFDSQASTVFNPTLRLACLDSSIAISPVFARFRNVIITSGTMSPIDMYPKILNFVPSRI 455
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPV------------------STKFDMRSDPGVARNY 520
+L R+ I P+++T+G+DQ+ + +T F +RSDP V RNY
Sbjct: 456 AEIGATLDRNSISPLIITKGNDQMTLRALSDDMETTDACSGDVLTTSFSLRSDPSVVRNY 515
Query: 521 GKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA 580
G L+VE+ +VPDGIVCFF SY YM+EI++ W ++ I+ EI ++KLVF+ET D ET LA
Sbjct: 516 GHLMVELSKVVPDGIVCFFPSYMYMEEIVSLWAETSIINEISKNKLVFVETPDGRETELA 575
Query: 581 LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
L NY++ACD GRG + FSVARGKV+EG+DF+ YGR V+M GVPFQYT S
Sbjct: 576 LANYKRACDNGRGGMLFSVARGKVSEGVDFEDGYGRCVVMLGVPFQYTES 625
>gi|449330281|gb|AGE96540.1| DNA repair helicase [Encephalitozoon cuniculi]
Length = 742
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 283/650 (43%), Positives = 413/650 (63%), Gaps = 45/650 (6%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +++V VYFPY ++YPEQ YM E+KR+LD KGHCL+EMP+GTGKT+ALLS+ SY
Sbjct: 1 MKIHIDEVLVYFPYSSVYPEQLKYMREVKRSLDNKGHCLIEMPSGTGKTVALLSMTISYQ 60
Query: 61 LSKPENPV--KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVN 118
L V K++YC+RTV E+EK L EL + Y +H + L +GL+ RKNLC+N
Sbjct: 61 LHMKSKNVHFKVVYCSRTVPEVEKALKELDRVVEYIKKH--RPIEFLGLGLTGRKNLCIN 118
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
L + N VD ACR+ V LA C+F+EN A +P VY
Sbjct: 119 KAALKSFN---VDVACRR----LVNKLAESK-----CDFYENL---ADFREVPVAVYDFL 163
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L+ G+++G CPY+L R + + ++Y Y YL+DP++ I+S E+ SVV+FDEAHN
Sbjct: 164 QLKEMGEKKGICPYYLVRRSIPVCDCIIYPYNYLIDPRICAIVSSELGPNSVVIFDEAHN 223
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
ID+ CIE LS+ +RR LEGA+R + + ++R K A + +Y ++ E L G +
Sbjct: 224 IDSHCIEVLSIEIRRNVLEGASRAIGNLENLLKRGKP--ASGVDIQYEKVREKLV--GPV 279
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
P + + + E +PGN+R + HF+ L+R+ ++ + +L+T ++ E SF
Sbjct: 280 PESIPYYYASGEGN---YEFLPGNLRNSFHFVSALKRITEFFKTKLKTTHLTTESTESFC 336
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
SI + +++K LRFC +RL L +L + D D H++T+ DF+T+V Y++GF +I
Sbjct: 337 KSIRELSFVEKKALRFCSQRLGMLSQSLGLDDED-MGHLKTVADFSTMVSMYSKGFVVIF 395
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EPFD + + +P L+L+C D+S+A+ PVF RF++V+ITSGT+SPID+YP++LNF P
Sbjct: 396 EPFDSQASTVFNPTLRLACLDSSIAISPVFARFRNVIITSGTMSPIDMYPKILNFVPSRI 455
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPV------------------STKFDMRSDPGVARNY 520
+L R+ I P+++T+G+DQ+ + +T F +RSDP V RNY
Sbjct: 456 AEIGATLDRNSISPLIITKGNDQMTLRALSDDMETTDACSGDVLTTSFSLRSDPSVVRNY 515
Query: 521 GKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA 580
G L+VE+ +VPDGIVCFF SY YM+EI++ W ++ I+ EI ++KLVF+ET D ET LA
Sbjct: 516 GHLMVELSKVVPDGIVCFFPSYMYMEEIVSLWAETSIINEISKNKLVFVETPDGRETELA 575
Query: 581 LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
L NY++ACD GRG + FSVARGKV+EG+DF+ YGR V+M GVPFQYT S
Sbjct: 576 LANYKRACDNGRGGMLFSVARGKVSEGVDFEDGYGRCVVMLGVPFQYTES 625
>gi|398016273|ref|XP_003861325.1| TFIIH basal transcription factor complex helicase subunit, putative
[Leishmania donovani]
gi|322499550|emb|CBZ34624.1| TFIIH basal transcription factor complex helicase subunit, putative
[Leishmania donovani]
Length = 813
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 271/649 (41%), Positives = 416/649 (64%), Gaps = 39/649 (6%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +EDV V FPY+ IYPEQ Y+ ELKR LD GH +LEMP+GTGKTI+LLS++ +Y+
Sbjct: 1 MKLYVEDVLVVFPYEYIYPEQLDYITELKRGLDKGGHMVLEMPSGTGKTISLLSILVAYL 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQTR--HLGPAAKILAIGLSSRKNLCV 117
K++YCTRTV EM KT+ E+ KLL +++ L P + + L+++KNLC+
Sbjct: 61 HHHAHEKRKVVYCTRTVEEMVKTMGEMRKLLKHWEAEGEQLRP---LRGLCLTAKKNLCI 117
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
+ V + + D VDA CR TA W + C +++ +A LPPGVY+L
Sbjct: 118 ETSVASLIHPDEVDAGCRSITAPWQQE--------GRCGYYDTLAQAPLE--LPPGVYSL 167
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
DL+ FG+Q CPY+L R + +++V+SY Y++DP V+ + + + + ++VV DE H
Sbjct: 168 DDLKDFGEQHHVCPYYLVRKALPVVDIIVHSYLYMVDPVVSEVTKEFLNENTIVVMDEGH 227
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALR-- 295
N+D+VCIEA+S+ + ++ A +N+ +++E++ KAT+ L+ EY+RLV GLA+
Sbjct: 228 NVDDVCIEAMSLILTKKDSLDAKQNMKDLSKELDHLKATNRQMLQDEYDRLVNGLAMTEM 287
Query: 296 GNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQY---LRGRLETENVEKE 352
P A + PA+P+++ + A+P ++R+A HFL ++RLV + + R+ V
Sbjct: 288 ARDPEQRALVEAPAIPANVAEGAIPASLRQANHFLAFMQRLVDFTHRIVARITRTYVAD- 346
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY-- 410
P++F+ + ++ R+ ERL L+ TL++T+ ++ + I TL+ Y
Sbjct: 347 -PLTFLTKLKEECALEISHFRYLSERLKVLLTTLQVTNAGKYRPVALIAQMYTLLSMYYT 405
Query: 411 -----TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID 465
GF ++ E FD P IPDPV++ C DASLA++ F R++SV++TSGTLSP+D
Sbjct: 406 DDRYEKPGFVVVCEAFDPTRPQIPDPVIRTVCVDASLALRDTFARYRSVILTSGTLSPMD 465
Query: 466 LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP-----VSTKFDMRSDPG----V 516
+YP++L F P +S+SF+M+L+R CI P+++TR S+ + V++ F +R++P V
Sbjct: 466 IYPKILGFTPAISKSFQMTLSRKCIAPVIVTRSSESVSITAEEVTSSFKVRTNPTAQALV 525
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVE 576
Y LL+E+ VPDG+VCFF Y YM E++ W+ SG L+++ +HKL+F+ETQ V E
Sbjct: 526 TSAYESLLLELAKTVPDGMVCFFTGYQYMGEVLLAWHSSGFLQKLAKHKLIFVETQGVEE 585
Query: 577 TTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
T++AL NYR+ACD GRGA+F S+ARGK+AEGIDFDRHYGR V+MFGVPF
Sbjct: 586 TSVALANYRRACDIGRGAIFMSIARGKIAEGIDFDRHYGRAVVMFGVPF 634
>gi|389583177|dbj|GAB65913.1| DNA excision-repair helicase, partial [Plasmodium cynomolgi strain
B]
Length = 738
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 274/653 (41%), Positives = 419/653 (64%), Gaps = 38/653 (5%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
++F+L+D+ V+FPYD IYPEQY+YM LK+ LD++GHC+LEMPTGTGKT+A+ SLITSY
Sbjct: 2 VVFQLDDLEVFFPYDYIYPEQYAYMRYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ 61
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY---QTRHLGPAAKILAIGLSSRKNLCV 117
K + K I+CTRT HE EK E + L + +++ L S R +
Sbjct: 62 YGKNDEG-KFIFCTRT-HEREKIDEECRKLTATFIREKKYINQKINKLGNAHSDRDRI-- 117
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
+N+ +D + +L N I C +FENY+K ++ PGVYT+
Sbjct: 118 --SEFIVKNKQHIDVEDYFDIYNTSNSLEEYN-EIGLCGYFENYKKEFQFELIQPGVYTI 174
Query: 178 QDLRAFGKQQGW----------CPYFLARHMVQFANVVVYSYQYLLDPKVAG--IISKE- 224
+DL+ K G+ CPYF A+ +++ A V+V +YQY++DPKV+ I ++
Sbjct: 175 EDLKILCK--GYKNAQNVSVPICPYFCAKKIIEVAKVIVLNYQYVIDPKVSKSLFIGRDV 232
Query: 225 -----MQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAG 279
+QK ++VFDEAHNID+VC+EALS+ + Q+ E + + + ++
Sbjct: 233 NNRVNLQKNDIIVFDEAHNIDSVCLEALSLKLLGQSTEQPITSEKKDQTAVSSLFPEES- 291
Query: 280 RLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAV-PGNIRRAEHFLHVLRRLVQ 338
+Y+ L G P + +P L DI+K + PGNIR+AEHFL+++R +V
Sbjct: 292 ---KDYSLLTNSNNEGGEDPTELHY--SPLLMEDIVKNVIIPGNIRKAEHFLNLMRVVVM 346
Query: 339 YLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQ 398
YL+ + + EGP+SF+ +D +FC++RL ++ L+I + +++ +
Sbjct: 347 YLKKYVNIYEITSEGPLSFLYKCERETKLDTSFFKFCFDRLKGILNALQIVNVEDYSALN 406
Query: 399 TICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITS 458
+C+F TL+G+Y +GF II EP+ E I DPV+Q +C D+S+A+K V +++SV++TS
Sbjct: 407 IVCNFCTLLGSYFQGFIIICEPYPE-ATGIYDPVIQFACLDSSIAMKSVIKKYRSVILTS 465
Query: 459 GTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVAR 518
GT++P++LYP+LLNF V++ SF MS R+C+CP+++T+ SD +P+S++F +RSD V +
Sbjct: 466 GTITPLELYPKLLNFKTVLTASFPMSFDRNCVCPLIVTKSSDLVPLSSQFSLRSDITVIK 525
Query: 519 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETT 578
NYG LLVEM +PDGIV +F SY YM+E+I++W + GI+ I+ HKLVFIET+D+V TT
Sbjct: 526 NYGMLLVEMCKTIPDGIVAYFPSYIYMEEVISSWYELGIITSILDHKLVFIETKDIVSTT 585
Query: 579 LALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+AL N+++ACD G+GAVF S+ RGK+AEGIDFD+HYG+ VI+FG+P+QYTLS+
Sbjct: 586 IALHNFKRACDLGKGAVFLSICRGKIAEGIDFDKHYGKCVILFGIPYQYTLSR 638
>gi|401423118|ref|XP_003876046.1| putative DNA excision repair protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492286|emb|CBZ27561.1| putative DNA excision repair protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 813
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 271/649 (41%), Positives = 418/649 (64%), Gaps = 39/649 (6%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +EDV V FPY+ IYPEQ Y+ ELKR LD GH +LEMP+GTGKTI+LLS++ +Y+
Sbjct: 1 MKLYVEDVLVVFPYEYIYPEQLDYITELKRGLDKGGHMVLEMPSGTGKTISLLSILVAYL 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQTR--HLGPAAKILAIGLSSRKNLCV 117
K++YCTRTV EM KT+ E+ KLL +++ L P + + L+++KNLC+
Sbjct: 61 HHHAYEKRKVVYCTRTVEEMVKTMGEMRKLLKHWEAEGEQLRP---LRGLCLTAKKNLCI 117
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
+ V + + D VDA CR TA W + C +++ +A LPPGVY+L
Sbjct: 118 ETSVASLIHPDEVDAGCRSITAPWQQE--------GRCGYYDTLVQAPLE--LPPGVYSL 167
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
DL+ FG+Q CPY+L R + +++V+SY Y++DP V+ + + + + ++VV DE H
Sbjct: 168 DDLKDFGEQHHVCPYYLVRKALPVVDIIVHSYLYMVDPVVSEVTKEFLNENTIVVMDEGH 227
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGN 297
N+D+VCIEA+S+ + ++ A +N+ +++E++ KAT+ +L+ EY+RLV GLA+
Sbjct: 228 NVDDVCIEAMSLILTKKDSLDAKQNMKDLSKELDHLKATNRQQLQDEYDRLVNGLAMAEM 287
Query: 298 LPIAD--AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQY---LRGRLETENVEKE 352
+ A + PA+P+++ + A+P ++R+A HFL ++RLV + + R+ V
Sbjct: 288 ARDLEQRALVETPAIPANVAEGAIPASLRQANHFLAFMQRLVDFTHRIVARITRTYVAD- 346
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY-- 410
P++F+ + ++ R+ ERL L+ TL++T+ ++ + I TL+ Y
Sbjct: 347 -PLTFLTKLKEECALEISHFRYLSERLKVLLTTLQVTNAGKYRPVALIAQMYTLLSMYYT 405
Query: 411 -----TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID 465
GF ++ E FD P IPDPV++ C DASLA++ F R++SV++TSGTLSP+D
Sbjct: 406 DDRYEKPGFVVVCEAFDPTRPQIPDPVIRTVCVDASLALRDTFSRYRSVILTSGTLSPMD 465
Query: 466 LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP-----VSTKFDMRSDPG----V 516
+YP++L F P +S+SF+M+L+R CI P+++TR S+ + V++ F +R++P V
Sbjct: 466 IYPKILGFTPAISKSFQMTLSRKCIAPVIVTRSSESVSITAEEVTSSFKVRTNPTAQALV 525
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVE 576
Y LL+E+ VPDG+VCFF Y YM E++ TW+ SG L+++ +HKL+F+ETQ V E
Sbjct: 526 TSAYESLLLELAKTVPDGMVCFFTGYQYMGEVLLTWHSSGFLQKLAKHKLIFVETQGVEE 585
Query: 577 TTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
T++AL NYR+ACD GRGA+F S+ARGK+AEGIDFDRHYGR V+MFGVPF
Sbjct: 586 TSVALANYRRACDIGRGAIFMSIARGKIAEGIDFDRHYGRAVVMFGVPF 634
>gi|340055622|emb|CCC49943.1| TFIIH basal transcription factor, private [Trypanosoma vivax Y486]
Length = 889
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 291/648 (44%), Positives = 414/648 (63%), Gaps = 35/648 (5%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F +EDV V FPY+ IYPEQ YM ELK+ LD GH +LEMP+GTGKT LLSL+ +Y+
Sbjct: 87 MKFFIEDVPVLFPYEYIYPEQLEYMTELKKGLDRGGHMVLEMPSGTGKTTTLLSLLLAYL 146
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQTRHLGPAAKIL-AIGLSSRKNLCVN 118
K++YCTRTV E+ KTL EL KLL +++ G ++ L + L+++KNLC+
Sbjct: 147 NHHASERRKVVYCTRTVEEVVKTLGELRKLLRLWESE--GTLSRPLHGVCLTAKKNLCIE 204
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
V+ D VDA CR A W + + C +F+ + A LPPG Y++
Sbjct: 205 PSVVNRRGLDEVDAGCRSLIAPWQTS--------QRCSYFDTLDSAEFE--LPPGAYSVD 254
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
DL+ FG+ CPY+LAR ++ A++VV+S+ Y++DP VA + + + + ++VV DE HN
Sbjct: 255 DLKQFGETHHVCPYYLARKALKAADIVVHSFLYIVDPIVAEVTKEYLNENTIVVMDEGHN 314
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+D+VCIEA+S+ + + A +L ++N+ ++ KAT+ RL+ EY+RLV GLA+
Sbjct: 315 VDDVCIEAMSLIITKDDAVQAKESLKQLNRAVDYIKATNRQRLQDEYDRLVNGLAMAEMA 374
Query: 299 ----PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYL-RGRLETENVEKEG 353
P A + P++P DI +EAVPG +R+A HFL ++RLV + R
Sbjct: 375 RAAEPATFAPVRTPSIPQDIAEEAVPGTLRQANHFLAFMQRLVDFTHRVVCRISRTYVAD 434
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICD-FATLVGTYTR 412
P++F+ + +D + LR+ ERL +LM TL+IT+T F +I I + TL YT
Sbjct: 435 PLTFLTKVREECSVDLRHLRYLTERLKALMNTLQITNTYGFRNIVLIAQMYMTLATHYTD 494
Query: 413 ------GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDL 466
GF ++ E D P +PDPV++L C DASLA++ VF R +SVV+TSGTLSP+D+
Sbjct: 495 DRYERPGFVVVCEAHDPTRPAVPDPVVRLVCVDASLALRDVFSRHRSVVLTSGTLSPLDI 554
Query: 467 YPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTK-----FDMRSDPG----VA 517
YP++L F PV+S+SF+M+L+R CI P+V+TR S+ + ++ + F +R DP V+
Sbjct: 555 YPKILGFSPVISKSFQMTLSRKCIAPVVVTRSSESVNITAEEVTSCFVVRKDPVAQEIVS 614
Query: 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVET 577
Y LL + VPDGIVCFF Y YM E++ W SG LKE+ QHKL+F+ETQ V ET
Sbjct: 615 SAYEDLLRGLAKTVPDGIVCFFTGYQYMSEVLLGWYKSGFLKELAQHKLIFVETQSVEET 674
Query: 578 TLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+LAL NY++ACD GRGAVF ++ARGK+AEGIDFDRHYGR V+MFGVPF
Sbjct: 675 SLALANYKRACDIGRGAVFMAIARGKIAEGIDFDRHYGRAVVMFGVPF 722
>gi|429963255|gb|ELA42799.1| DNA repair helicase (rad3) [Vittaforma corneae ATCC 50505]
Length = 747
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 280/657 (42%), Positives = 404/657 (61%), Gaps = 55/657 (8%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++ V +YFPY+ IYPEQ Y+ L +++ GH L+EMP+GTGKT+ALLS SY
Sbjct: 1 MRFLIDGVPIYFPYEKIYPEQLKYIKSLLKSIQTPGHVLIEMPSGTGKTVALLSCTVSYQ 60
Query: 61 LSKPEN--PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVN 118
L P K++YC+RT+ E++K L EL+ L Y +H+ + L +GLS R N+C+N
Sbjct: 61 LHMKAKGVPFKIVYCSRTLPEIDKALKELRSLVEYIKKHV--SFDFLGVGLSKRGNMCIN 118
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
L + + V+ CRK T + EN C+F+EN A +P GVY
Sbjct: 119 KEALGSFD---VEITCRKMTNHF------ENMK---CDFYEN-----KATSIPYGVYDFT 161
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
+++ G + G CPYF R+ + + ++Y Y YL++P + IISKE+ K+S VVFDEAHN
Sbjct: 162 EIKELGAKMGVCPYFFVRNHLPLFDCIIYPYNYLIEPSIFSIISKELPKDSFVVFDEAHN 221
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
ID+ CIEALS+ + R TLE A+R +S I +I+ K RLR EY + + + G
Sbjct: 222 IDSHCIEALSIEISRNTLEAASRIMSVIESKIKSKKQEIDRRLRKEYELMFKTMEYTGEN 281
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
I + +N E PGN+R A HF+ V++RL+++L+ +L+T ++ E SF+
Sbjct: 282 TIPHFFNTNKP-------ELAPGNLRNASHFVSVMKRLIEFLKTKLKTTHLTVESIKSFI 334
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
SI ID+KTL F +R+ ++ +L + D DE + +I +F T++ Y++GFS+I
Sbjct: 335 QSIKELTFIDKKTLSFVSQRMGIMVQSLGVED-DELYKLLSIANFGTMLSIYSKGFSVIF 393
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EP+D M + +PVL+LSC DAS+A+ VF F++V+ITSGTLSPI++YP++LNF P
Sbjct: 394 EPYDT-MSGVFNPVLRLSCLDASIAMSHVFKNFRNVIITSGTLSPIEMYPKILNFVPSSI 452
Query: 479 RSFKMSLTRDCICPMVLTRGSDQL-------------------------PVSTKFDMRSD 513
++L R+ P+++T+G DQ+ ++T F +R+D
Sbjct: 453 VEIGITLCRNSTSPLIITKGDDQMLLKNSKDDEYEMLEMQKSSMSQADGKITTSFALRAD 512
Query: 514 PGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD 573
P V RNYG L+ + IVPD IV FF SY YM+E+I W++S +++EI+Q KLVFIET D
Sbjct: 513 PSVVRNYGNLITSLSKIVPDNIVVFFPSYIYMEEVITLWSESNVMEEILQSKLVFIETPD 572
Query: 574 VVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
ET AL NYRKACD GRGAV FSVARGKV+EG+DF+ YGR V+M GVPF YT S
Sbjct: 573 FRETETALRNYRKACDMGRGAVLFSVARGKVSEGVDFEHGYGRAVVMLGVPFMYTES 629
>gi|157870391|ref|XP_001683746.1| putative DNA excision repair protein [Leishmania major strain
Friedlin]
gi|68126812|emb|CAJ05417.1| putative DNA excision repair protein [Leishmania major strain
Friedlin]
Length = 813
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 272/649 (41%), Positives = 414/649 (63%), Gaps = 39/649 (6%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +EDV V FPY+ IYPEQ Y+ ELKR LD GH +LEMP+GTGKTI+LLS++ +Y+
Sbjct: 1 MKLYVEDVLVVFPYEYIYPEQLDYITELKRGLDKGGHMVLEMPSGTGKTISLLSILVAYL 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQTR--HLGPAAKILAIGLSSRKNLCV 117
K++YCTRTV EM KT+ E+ KLL +++ L P + + LS++KNLC+
Sbjct: 61 HHHAHEKRKVVYCTRTVEEMVKTMGEMRKLLKHWEAEGEQLRP---LRGLCLSAKKNLCI 117
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
+ V + + D VDA CR TA W + C +++ +A LPPGV++L
Sbjct: 118 ETSVASRIHPDEVDAGCRSITAPWQQE--------RRCGYYDTLAQAPLE--LPPGVHSL 167
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
DL+ FG+Q CPY+L R + +++V+SY Y++DP V+ + + + + ++VV DE H
Sbjct: 168 DDLKDFGEQHHVCPYYLVRKALPIVDIIVHSYLYMVDPVVSEVTKEFLNENTIVVMDEGH 227
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALR-- 295
N+D+VCIEA+S+ + ++ A N+ +N+E++ KAT+ +L+ EY+RLV GLA+
Sbjct: 228 NVDDVCIEAMSLILTKKDSLDAKENMKDLNKELDHLKATNRQQLQNEYDRLVNGLAMAEM 287
Query: 296 GNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQY---LRGRLETENVEKE 352
P A + PA+P+++ + A+P ++R+A HFL ++RLV + + R+ V
Sbjct: 288 ARDPEQRALVEAPAIPANVAEGAIPASLRQANHFLAFMQRLVDFTHRIVARITRTYVAD- 346
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT-YT 411
P++F+ + ++ R+ RL L+ TL+I + ++ + I TL+ YT
Sbjct: 347 -PLTFLTKLKEECALEISHFRYLSGRLKVLLTTLQIANAGKYRPVALIAQMYTLLSMHYT 405
Query: 412 R------GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID 465
GF ++ E FD P IPDPV++ C DASLA++ F R +SV++TSGTLSP+D
Sbjct: 406 DDRYEKPGFVVVCEAFDPTRPQIPDPVIRTVCVDASLALRDTFARHRSVILTSGTLSPMD 465
Query: 466 LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQL-----PVSTKFDMRSDPG----V 516
+YP++L F P +S+SF+M+L+R CI P+++TR S+ + V++ F +R++P V
Sbjct: 466 IYPKILGFTPAISKSFQMTLSRKCIAPVIVTRSSESVNITAEEVTSSFKVRTNPTAQALV 525
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVE 576
Y LL+E+ VPDG+VCFF Y YM E++ W+ SG L+++ +HKL+F+ETQ V E
Sbjct: 526 TSAYESLLLELAKTVPDGMVCFFTGYQYMGEVLLAWHSSGFLQKLAKHKLIFVETQGVEE 585
Query: 577 TTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
T++AL NYR+ACD GRGA+F S+ARGK+AEGIDFDRHYGR V+MFGVPF
Sbjct: 586 TSVALANYRRACDIGRGAIFMSIARGKIAEGIDFDRHYGRAVVMFGVPF 634
>gi|340506361|gb|EGR32513.1| tfiih basal transcription factor complex helicase subunit, putative
[Ichthyophthirius multifiliis]
Length = 809
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 271/629 (43%), Positives = 413/629 (65%), Gaps = 5/629 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F + D+ VYFPY ++Y EQ YM +LK LD +GH ++EMPTGTGKT+ LLSLI+SY+
Sbjct: 1 MKFYINDLPVYFPYQSLYKEQLEYMKDLKLILDNQGHGIIEMPTGTGKTVCLLSLISSYL 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA---KILAIGLSSRKNLCV 117
L KL+YCTRTV EMEKT+ ELK + +++ K L LS+R NLC+
Sbjct: 61 LQNQGKFKKLLYCTRTVVEMEKTIEELKFVLENTKKYILEEKREFKFLCTALSARSNLCI 120
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
N V + ++ +D C K TA WVR E + C FFEN+E+ G+Y +
Sbjct: 121 NPLVQNQQKKEKIDDECLKLTAKWVR-FRGEKGEQKLCTFFENFEEKKEEIEFKEGIYNI 179
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
DL+ GKQ+ CPYFLAR +V +N+VVY+Y YLL P++ II+K +QK+ +VVFDEAH
Sbjct: 180 DDLKEIGKQKNICPYFLARKLVNDSNIVVYNYMYLLSPQMKDIINKSLQKDCIVVFDEAH 239
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGN 297
NIDN+C++ +V++ ++ L+ A +N+ ++ +I+ K L EY +L+ GL +
Sbjct: 240 NIDNICLDVFTVNINKRLLDSAYKNVEQLELKIDNMKNQSQQSLENEYKQLLNGLKKKIL 299
Query: 298 LPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
L + +L + ++ K+++P IR A+ F+ L++++ +L+ +L+ +N + P F
Sbjct: 300 LQKNNFYLLIKGVFEELAKQSIPLQIRLAKPFVLFLKKILMFLKNKLKEKNCINQDPPQF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
++ + IDQ +L+F ERL L ++LEITD DE++ I TI F+TL+ RGF II
Sbjct: 360 LSDMQIQNHIDQTSLKFAEERLSQLFMSLEITDNDEYVAITTIAQFSTLLAMNQRGFKII 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
+P + DP+L +C D+SLA++ VF + SV++TSGT+SP+D+YP++LNF+P +
Sbjct: 420 FQP-SPLDGSLSDPLLTFTCLDSSLAIQNVFKEYASVILTSGTMSPLDIYPKILNFNPFM 478
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S + L+R+ I P+++T+G D +S++F+ R + V R++G LL+++ I PDGIV
Sbjct: 479 LKSIDIELSRNSINPIIVTKGLDFTALSSEFEARQNMTVTRSFGALLIDISKICPDGIVA 538
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM++II W+ GIL E+ ++KLV+ E++DV +T+ +L ++R+ACD GRGA+FF
Sbjct: 539 FFPSYRYMEQIIFEWDQDGILDELRKYKLVYFESKDVAQTSQSLFHFRRACDYGRGAIFF 598
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626
S+ARGKVAEGIDF+ YGR VIM G P Q
Sbjct: 599 SIARGKVAEGIDFNEQYGRCVIMLGFPVQ 627
>gi|294879226|ref|XP_002768609.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
gi|239871280|gb|EER01327.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
Length = 887
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 293/731 (40%), Positives = 432/731 (59%), Gaps = 106/731 (14%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAK-GHCLLEMPTGTGKTIALLSLITSYVL 61
++ + V FPYD IYPEQ YM LK+ALDA G L+EMPTGTGKT+ ++SLITSY L
Sbjct: 6 LNIDGLRVLFPYDAIYPEQVQYMHYLKQALDASHGQGLIEMPTGTGKTVTIMSLITSYQL 65
Query: 62 SKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA------KILAIGLSSRKNL 115
S P+ KL+YCTRTV EM + + ELKL+ Y+ R L K L IGLS+R+N+
Sbjct: 66 SHPQMG-KLVYCTRTVPEMNQAIRELKLVIEYRERVLASEKPDEAPQKFLGIGLSARRNM 124
Query: 116 CVNSRVLAAENRDSVDAACRKRTASWVR-------------ALAAENPNIET-------- 154
C++ V +RD +D CR+ T++++ + A N++
Sbjct: 125 CIHPDVANQADRDKIDIKCREMTSNFLNKKSNRFSQLSSGVSKANSGRNVQKPIEISQKF 184
Query: 155 --------CEFFENYEK------------AASAA-------VLPPGVYTLQDLRAFGKQQ 187
C FFE Y++ + SA+ +P GVYTL+DLR G +
Sbjct: 185 SQNFLTCRCSFFEQYDELIGGVGKRYNNDSESASNEEKKKFAIPSGVYTLEDLRVAGGAE 244
Query: 188 GWCPYFLARHMVQFANVVVYSYQYLLDPKVA-----------------GIISKEMQKE-- 228
GWCPY++++ +++ A+V+V++YQY+LDP+V+ G ++KE ++
Sbjct: 245 GWCPYYMSKRLLRHADVIVFNYQYVLDPRVSASALIAGEASGRGVMTHGALAKEGEERPA 304
Query: 229 ---------------SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERF 273
+VV+FDEAHNID++C++AL+V+V R+T++ A+ N+ R+ E+ +
Sbjct: 305 ALGVDNNDDDQQFEPAVVIFDEAHNIDDICMDALTVTVDRKTIDRASSNVKRLQHEVTQL 364
Query: 274 KATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAV--------PGNIRR 325
K D RL+AE L+ GLA + D +S + LK+AV PGN+R+
Sbjct: 365 KKVDEARLKAEVENLMRGLAPASGMSEEDESISALRFGPNELKKAVSGVSHLVIPGNVRQ 424
Query: 326 AEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLT 385
AEHFL VL+++ +LR + + EGP+ F+ + + I+ +T++ RL SLM T
Sbjct: 425 AEHFLGVLQQVCAFLRAYIRVDKARAEGPLMFLHELESQQFIEARTMKAFDARLRSLMNT 484
Query: 386 LEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVL----QLSCHDAS 441
L+ITD DEF + ICD TL +++GF+++ +P E + PVL Q +
Sbjct: 485 LKITDIDEFSPLTKICDLCTLASLHSKGFAVLTDPCPE--AEVSQPVLREVAQYLVKNVK 542
Query: 442 LAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDCICPMVLTRGSD 500
A+ + S+V+TSGTLSP+ +Y +LL VVS + +SL RDCI P+++TR +D
Sbjct: 543 FAICSRREICFSLVLTSGTLSPLSMYSKLLGLDRVVVSEALDISLERDCIRPLIVTRSND 602
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ +S+ F R D V++ YG LL E+V +VPDG+VCFF S +M +++ TW DSG L
Sbjct: 603 -VVLSSSFQSRKDEEVSKCYGTLLEELVQVVPDGVVCFFTSKVFMQQVVRTWYDSGTLAR 661
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIM 620
+ HK+VF ET DVV TT+AL NYR+ACD GRG +F +VARGKV+EGIDFDRHYGR V++
Sbjct: 662 LSTHKVVFFETDDVVSTTIALSNYREACDQGRGGLFLAVARGKVSEGIDFDRHYGRAVVL 721
Query: 621 FGVPFQYTLSK 631
FGVPFQY+LS+
Sbjct: 722 FGVPFQYSLSR 732
>gi|83405926|gb|AAI10523.1| ERCC2 protein [Homo sapiens]
Length = 682
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 246/430 (57%), Positives = 330/430 (76%)
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+
Sbjct: 124 ANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQG 183
Query: 262 NLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPG 321
NL + + + R K TD RLR EY RLVEGL DA L+NP LP+++L+EAVPG
Sbjct: 184 NLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPNEVLQEAVPG 243
Query: 322 NIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHS 381
+IR AEHFL LRRL++Y++ RL ++V +E P +F++ + I +K LRFC ERL S
Sbjct: 244 SIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRS 303
Query: 382 LMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDAS 441
L+ TLEITD +F + + +FATLV TY +GF+IIIEPFD+R P I +P+L SC DAS
Sbjct: 304 LLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDAS 363
Query: 442 LAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQ 501
LA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+L R C+CPM++ RG+DQ
Sbjct: 364 LAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQ 423
Query: 502 LPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEI 561
+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY YM+ +A+W + GIL+ I
Sbjct: 424 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENI 483
Query: 562 MQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV+EGIDF HYGR VIMF
Sbjct: 484 QRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMF 543
Query: 622 GVPFQYTLSK 631
GVP+ YT S+
Sbjct: 544 GVPYVYTQSR 553
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 88/124 (70%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAA 124
+L A
Sbjct: 121 ILHA 124
>gi|397493361|ref|XP_003817576.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 2 [Pan paniscus]
Length = 682
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 246/430 (57%), Positives = 329/430 (76%)
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+
Sbjct: 124 ANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQG 183
Query: 262 NLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPG 321
NL + + + R K TD RLR EY RLVEGL DA L+NP LP ++L+EAVPG
Sbjct: 184 NLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPG 243
Query: 322 NIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHS 381
+IR AEHFL LRRL++Y++ RL ++V +E P +F++ + I +K LRFC ERL S
Sbjct: 244 SIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRS 303
Query: 382 LMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDAS 441
L+ TLEITD +F + + +FATLV TY +GF+IIIEPFD+R P I +P+L SC DAS
Sbjct: 304 LLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDAS 363
Query: 442 LAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQ 501
LA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+L R C+CPM++ RG+DQ
Sbjct: 364 LAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQ 423
Query: 502 LPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEI 561
+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY YM+ +A+W + GIL+ I
Sbjct: 424 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENI 483
Query: 562 MQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV+EGIDF HYGR VIMF
Sbjct: 484 QRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMF 543
Query: 622 GVPFQYTLSK 631
GVP+ YT S+
Sbjct: 544 GVPYVYTQSR 553
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 88/124 (70%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAA 124
+L A
Sbjct: 121 ILHA 124
>gi|403299023|ref|XP_003940292.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 2 [Saimiri boliviensis boliviensis]
Length = 704
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 246/430 (57%), Positives = 329/430 (76%)
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+
Sbjct: 146 ANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQG 205
Query: 262 NLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPG 321
NL + + + R K TD RLR EY RLVEGL DA L+NP LP ++L+EAVPG
Sbjct: 206 NLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPG 265
Query: 322 NIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHS 381
+IR AEHFL LRRL++Y++ RL ++V +E P +F++ + I +K LRFC ERL S
Sbjct: 266 SIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRS 325
Query: 382 LMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDAS 441
L+ TLEITD +F + + +FATLV TY +GF+IIIEPFD+R P I +P+L SC DAS
Sbjct: 326 LLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDAS 385
Query: 442 LAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQ 501
LA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+L R C+CPM++ RG+DQ
Sbjct: 386 LAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQ 445
Query: 502 LPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEI 561
+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY YM+ +A+W + GIL+ I
Sbjct: 446 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENI 505
Query: 562 MQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV+EGIDF HYGR VIMF
Sbjct: 506 QRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMF 565
Query: 622 GVPFQYTLSK 631
GVP+ YT S+
Sbjct: 566 GVPYVYTQSR 575
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 87/122 (71%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y +
Sbjct: 25 LNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRA 84
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++ +L
Sbjct: 85 YPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEIL 144
Query: 123 AA 124
A
Sbjct: 145 HA 146
>gi|296234101|ref|XP_002762285.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 2 [Callithrix jacchus]
Length = 682
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/429 (57%), Positives = 328/429 (76%)
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+
Sbjct: 124 ANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQG 183
Query: 262 NLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPG 321
NL + + + R K TD RLR EY RLVEGL DA L+NP LP ++L+EAVPG
Sbjct: 184 NLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPG 243
Query: 322 NIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHS 381
+IR AEHFL LRRL++Y++ RL ++V +E P +F++ + I +K LRFC ERL S
Sbjct: 244 SIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRS 303
Query: 382 LMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDAS 441
L+ TLEITD +F + + +FATLV TY +GF+IIIEPFD+R P I +P+L SC DAS
Sbjct: 304 LLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDAS 363
Query: 442 LAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQ 501
LA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+L R C+CPM++ RG+DQ
Sbjct: 364 LAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQ 423
Query: 502 LPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEI 561
+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY YM+ +A+W + GIL+ I
Sbjct: 424 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENI 483
Query: 562 MQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV+EGIDF HYGR VIMF
Sbjct: 484 QRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMF 543
Query: 622 GVPFQYTLS 630
GVP+ YT S
Sbjct: 544 GVPYVYTQS 552
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 88/124 (70%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAA 124
+L A
Sbjct: 121 ILHA 124
>gi|407860924|gb|EKG07586.1| TFIIH basal transcription factor complex helicase subunit, putative
[Trypanosoma cruzi]
Length = 780
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 267/622 (42%), Positives = 398/622 (63%), Gaps = 31/622 (4%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M ELK+ LD GH +LEMP+GTGKT LLSL+ +Y+ + K+IYCTRTV EM KT+
Sbjct: 1 MTELKKGLDQGGHIVLEMPSGTGKTTTLLSLLIAYIHYHADEKRKVIYCTRTVEEMTKTM 60
Query: 85 AEL-KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR 143
EL KLL + T LG + + L+++KNLC+ S V A + VDA CR TA W
Sbjct: 61 GELRKLLELWNTDELGSNRPLRGLCLTAKKNLCIESTVAAQRYPEDVDAGCRSLTAPWQT 120
Query: 144 ALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFAN 203
+ C +F+N E+ LPPG Y+++DL+ FG+ CPY+L R ++ +
Sbjct: 121 S--------NRCAYFDNLERIPFE--LPPGAYSVEDLKRFGEAHQLCPYYLVRKALRVVD 170
Query: 204 VVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
+VV+S+ Y++DP VA + + ++VV DE HN+D+VCIEA+S+ + ++ A N+
Sbjct: 171 IVVHSFLYIVDPIVAEVTKGYFNENAIVVMDEGHNVDDVCIEAMSLIITKEDAAQAKENV 230
Query: 264 SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWL---SNPALPSDILKEAVP 320
++N + KAT+ +L+ EY+RLV GLA+ D+ + P++PS+I +EA+P
Sbjct: 231 KQLNAAADHLKATNRQQLQDEYDRLVNGLAMVEMARSVDSMMMTVQAPSIPSEIAEEAIP 290
Query: 321 GNIRRAEHFLHVLRRLVQYL-RGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERL 379
G++R+A HFL ++RLV + R P++F++ + +D + R+ ERL
Sbjct: 291 GSLRQANHFLSFIQRLVDFTHRVVCRISRTYVADPLTFLSKVRDECAVDIRHFRYLTERL 350
Query: 380 HSLMLTLEITDTDEFLHIQTICD-FATLVGTYTR------GFSIIIEPFDERMPHIPDPV 432
LM TL+IT++ +F ++ I + TL YT GF ++ E D P +PDPV
Sbjct: 351 KVLMNTLQITNSHKFRNVSLIAQMYMTLSTHYTDDRYEKPGFVVVCEAHDPTRPAVPDPV 410
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP 492
++L C DASLA++ F +++SVV+TSGTLSP+D+YP++L F PV+++SF+M+L+R CI P
Sbjct: 411 IRLVCVDASLALREAFSKYRSVVLTSGTLSPLDIYPKILGFTPVIAKSFQMTLSRKCIAP 470
Query: 493 MVLTRGSDQL-----PVSTKFDMRSDPG----VARNYGKLLVEMVSIVPDGIVCFFVSYS 543
+V+TR ++ + +++ F +R++P V+ Y LL + VPDGIVCFF Y
Sbjct: 471 VVVTRSTESVNITMEEITSSFVVRTNPLAQDIVSSAYEDLLRGLGKTVPDGIVCFFTGYQ 530
Query: 544 YMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGK 603
YM E++ W+ SG LKE+ Q+KL+FIETQ V ET++AL NYR+ACD GRGA+F ++ARGK
Sbjct: 531 YMGEVLLGWHRSGFLKELAQYKLIFIETQSVEETSIALANYRRACDIGRGAIFMAIARGK 590
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
+AEGIDFDRHYGR V+MFGVPF
Sbjct: 591 IAEGIDFDRHYGRAVVMFGVPF 612
>gi|395854142|ref|XP_003799557.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 2 [Otolemur garnettii]
Length = 682
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/430 (56%), Positives = 328/430 (76%)
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+ L+
Sbjct: 124 ANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRILDRCQG 183
Query: 262 NLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPG 321
NL + + + R K TD RLR EY RLVEGL DA L+NP LP ++L+EAVPG
Sbjct: 184 NLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPG 243
Query: 322 NIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHS 381
+IR AEHFL LRRL++Y++ RL ++V +E P +F++ + I +K LRFC ERL S
Sbjct: 244 SIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRS 303
Query: 382 LMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDAS 441
L+ TLEITD +F + + +FATLV TY +GF+IIIEPFD+R P I +P+L SC DAS
Sbjct: 304 LLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDAS 363
Query: 442 LAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQ 501
LA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+L R C+CPM++ RG+DQ
Sbjct: 364 LAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQ 423
Query: 502 LPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEI 561
+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY YM+ +A+W + GIL+ I
Sbjct: 424 VAISSKFESREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENI 483
Query: 562 MQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV+EGIDF HYGR VIMF
Sbjct: 484 QRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMF 543
Query: 622 GVPFQYTLSK 631
GVP+ YT S+
Sbjct: 544 GVPYVYTQSR 553
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 88/124 (70%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAA 124
+L A
Sbjct: 121 ILHA 124
>gi|154276530|ref|XP_001539110.1| DNA repair helicase RAD3 [Ajellomyces capsulatus NAm1]
gi|150414183|gb|EDN09548.1| DNA repair helicase RAD3 [Ajellomyces capsulatus NAm1]
Length = 683
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 257/555 (46%), Positives = 359/555 (64%), Gaps = 39/555 (7%)
Query: 77 VHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRK 136
+ E+EK LAELK L Y+ + LG A +GL+SRKNLC++ V ++ VDA CR
Sbjct: 1 MSEIEKALAELKALMKYRAQQLGFAEDFRGLGLTSRKNLCLHPSVKREKSGAVVDARCRS 60
Query: 137 RTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLAR 196
TA +V+ + ++E C +
Sbjct: 61 LTAGFVKEKKEKGEDVELCIY--------------------------------------- 81
Query: 197 HMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTL 256
H + F V++YSY YLLDPK+A +S+E+ K+S+VVFDEAHNIDNVCIE+LS+ + +L
Sbjct: 82 HEMPFCKVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNIDNVCIESLSIDLTEDSL 141
Query: 257 EGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILK 316
A+R + + ++IE K +DA +L+ EY +LVEGL + ++NPALP D+LK
Sbjct: 142 RKASRGANNLERKIEEMKRSDAEKLQNEYQKLVEGLREADEARQEEQLMANPALPDDLLK 201
Query: 317 EAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCY 376
EAVPGNIRRAEHF+ L+R ++YL+ R++ + E P+SF+A + I++K LRFC
Sbjct: 202 EAVPGNIRRAEHFVAFLKRFIEYLKTRMKITHTISETPLSFLAHLKDLTFIERKPLRFCA 261
Query: 377 ERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLS 436
ERL SL+ TLE+ + +++ +Q + FATLV TY +GF +I+EPF+ +P+P+L +
Sbjct: 262 ERLTSLVRTLELMNLEDYQPLQQVAAFATLVATYEKGFLLILEPFESETATVPNPILHFT 321
Query: 437 CHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLT 496
C DA++A+KPVFDRF SV++TSGTLSP+++YP++L F V+ S+ M+L R PMV+T
Sbjct: 322 CLDAAIAIKPVFDRFSSVIVTSGTLSPLEMYPKMLKFTTVLQESYTMTLARRSFLPMVVT 381
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG 556
RGSDQ +S+ F +R+DPGV RNYG LL+E I PDG+V FF SY YM+ II+ W G
Sbjct: 382 RGSDQAQISSSFQIRNDPGVVRNYGNLLLEFSRITPDGVVVFFPSYLYMESIISMWQGMG 441
Query: 557 ILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGR 616
IL + +KL+ +ET D E++LAL+ YR AC GRGAV VARGKV+EGIDFD HYGR
Sbjct: 442 ILDLVWNYKLILVETPDSQESSLALETYRTACCNGRGAVLLCVARGKVSEGIDFDHHYGR 501
Query: 617 LVIMFGVPFQYTLSK 631
VI GVPFQYT S+
Sbjct: 502 AVICIGVPFQYTESR 516
>gi|440796100|gb|ELR17209.1| Nucleotide excision repair protein, putative [Acanthamoeba
castellanii str. Neff]
Length = 696
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 279/608 (45%), Positives = 393/608 (64%), Gaps = 83/608 (13%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGP- 100
MP+GTGKT++LLSLITSY L+ PE KL+YC+RTV E+EK + EL+ + Y+ + LG
Sbjct: 1 MPSGTGKTVSLLSLITSYQLAHPEVG-KLVYCSRTVPEIEKAVEELRRVVAYRDQELGDD 59
Query: 101 AAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA-------LAAENPN-- 151
A K L + LS+R+NLC++ +V VD+ CR T+SWVRA L E +
Sbjct: 60 APKFLGLALSARRNLCIHPQVSQHTQGVVVDSKCRGLTSSWVRAEADKYRGLHEETTDGQ 119
Query: 152 -------IETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+E C+FFE YEK VL GVY+L DL+ G+++GWCPYFLARH++ F++V
Sbjct: 120 GRRSVGPVELCDFFEEYEKNGRD-VLLNGVYSLGDLKQIGRERGWCPYFLARHLINFSHV 178
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
V+YSYQY++DPK++ ++SKE +K S+VVFDEAHNIDNVCI+ALSV++ ++ L + R++
Sbjct: 179 VIYSYQYIIDPKISDLVSKEFKKNSIVVFDEAHNIDNVCIDALSVNIDKRILGASARSVK 238
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
++ I R KATDA +L+ EYNRLVEGL+ G IAD ++P LP D+++E +P NIR
Sbjct: 239 NLSTNITRIKATDADKLKKEYNRLVEGLS--GIARIADEAKADPVLPDDVIQEVIPANIR 296
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
+AE F+ +L+R +QYL+ RL T+ V E P++F+ S I KTLRFC RL SL+
Sbjct: 297 KAEDFIDLLKRFLQYLQARLNTKQVISEPPLAFLQSCQEATKIVPKTLRFCAGRLSSLLR 356
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP-FDERMPHIPDPVLQLSCHDASLA 443
LEI+DT E+ + +CDFATL+GTY +GFS+IIEP DE + + + +LQ +C DAS+A
Sbjct: 357 ALEISDTAEYQPLGVVCDFATLLGTYQKGFSLIIEPRSDEEVEN--NTILQYTCLDASIA 414
Query: 444 VKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP 503
++P+ RF+SVVITSGTLSP+D+YPR+LNF PVV+ MSL R DQ
Sbjct: 415 MQPIIRRFRSVVITSGTLSPLDMYPRMLNFMPVVTERLGMSLNR------------DQEV 462
Query: 504 VSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQ 563
+STKF+ R DP V RNYG LL++ ++ E ++ W++ GIL++++Q
Sbjct: 463 ISTKFEGRRDPSVLRNYGALLLQFTTV----------------ETVSVWDEIGILRQVVQ 506
Query: 564 HKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
HKL+F+ET D VE++LAL NYR C VI+FG+
Sbjct: 507 HKLLFVETPDSVESSLALSNYR--C-----------------------------VILFGI 535
Query: 624 PFQYTLSK 631
P+ T S+
Sbjct: 536 PYMNTQSR 543
>gi|281204292|gb|EFA78488.1| transcription factor IIH component [Polysphondylium pallidum PN500]
Length = 694
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/427 (56%), Positives = 321/427 (75%), Gaps = 5/427 (1%)
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
+++SYQY+LDPK++ ++S + S+VVFDEAHNIDNVCI ALS+++ QT+E AT+NL+
Sbjct: 112 LIFSYQYMLDPKISSLVSSQFASNSIVVFDEAHNIDNVCINALSINIDNQTIENATKNLT 171
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+IN IE K DA RL+ EY +LV+GLA G+ AD P LP++++ E VPGNIR
Sbjct: 172 KINNGIENLKKVDAERLKNEYVKLVQGLARSGDTMSAD-----PLLPNEVINEVVPGNIR 226
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
+AEHF+ VLRR + YLR RL T+ V E P+SF+ S++ I KTLRFC RL SL+
Sbjct: 227 KAEHFVSVLRRFIDYLRSRLRTQMVVSESPLSFLRSLSQLTTISAKTLRFCSSRLSSLLR 286
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TL+I+D ++F I I DFATLVGTY GF IIIEP+D++ P+ DP+ Q C DAS+ +
Sbjct: 287 TLQISDLNQFSSISVIADFATLVGTYGNGFIIIIEPYDQKTPNQYDPIFQFCCLDASIGM 346
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KP+FD+++SV+ITSGTLSPID+Y ++LNF P + MSL R CICP +LTRGSDQ+ V
Sbjct: 347 KPIFDKYKSVIITSGTLSPIDIYQKILNFRPSLVEQLSMSLHRSCICPCILTRGSDQISV 406
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
STKFD+R+D V RNYG LLVEM +IVPDGI+CFF SYSYM++I++ WN+ G+L I+ +
Sbjct: 407 STKFDVRADTAVIRNYGALLVEMSAIVPDGIICFFTSYSYMEQIVSVWNEMGLLNNILNN 466
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+F+ET D E+ LAL NY+KACD GRGAV SVARGKV+EGIDFD YGR VI++G+P
Sbjct: 467 KLIFVETSDAAESALALQNYKKACDSGRGAVLLSVARGKVSEGIDFDNQYGRCVILYGIP 526
Query: 625 FQYTLSK 631
+ T S+
Sbjct: 527 YINTESR 533
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 85/113 (75%), Gaps = 3/113 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M FK++++ VYFPY IYPEQY+YM+ LK+ALDA G C+LEMP+GTGKT++LLSLI+SY
Sbjct: 1 MKFKIDELDVYFPYAYIYPEQYNYMVALKKALDAGGPCMLEMPSGTGKTVSLLSLISSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA-KILAIGLSSR 112
+ P KLIYC+RTV E+E+ + E + + Y+ LG +A K LA+ ++SR
Sbjct: 61 VVHPT--AKLIYCSRTVPEIEQAMEEARRVLTYRNAELGESAPKTLALAMTSR 111
>gi|145498283|ref|XP_001435129.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402259|emb|CAK67732.1| unnamed protein product [Paramecium tetraurelia]
Length = 722
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 271/634 (42%), Positives = 394/634 (62%), Gaps = 40/634 (6%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY +Y EQ YM LK+ LD KGH +LEMPTGTGKT++LL+LI +Y+
Sbjct: 1 MKFVIDDLEVIFPYKFLYKEQLEYMQALKQTLDEKGHGILEMPTGTGKTVSLLALIIAYL 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+P KLIYCTRTV EMEKTL E++L+ + G A+GLSSRKNLC+N
Sbjct: 61 AQRPNTVKKLIYCTRTVVEMEKTLEEVRLVLKARKAE-GLNDNFTAVGLSSRKNLCINPD 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAV--LPPGVYTLQ 178
V+ +D VDA CRKRTA WV+ +N ETC F++NYEK+ + LP VY+L
Sbjct: 120 VI--NQKDRVDAECRKRTAEWVKR--GQN---ETCIFYDNYEKSGKETIANLPHDVYSLN 172
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
DLR G CPYF AR MV+ AN+VVY+Y YL+DP V+ ++K+ KESVVVFDEAHN
Sbjct: 173 DLRKNGAYSIQCPYFTAREMVKKANIVVYNYLYLIDPTVSSQLTKDQIKESVVVFDEAHN 232
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
ID+VCIEA +V + + L A NL + +I+ RL EY +L++ L +
Sbjct: 233 IDDVCIEAYTVRLNKPILAEAINNLKVVETQIQSETNEIQNRLNEEYKKLIKNLEKK--- 289
Query: 299 PIADAWLSNPALPSDILKE-AVPGNIRRAEHFLHVLRRLVQYLRGRLE-------TENVE 350
P L + +PG IR+A +F+ ++R++ LR +L+ T +
Sbjct: 290 ------------PEGELNQLVIPGQIRKARNFIDFMKRVINSLRKKLKDNSEALKTSHAI 337
Query: 351 KEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY 410
F I +D +L+ C ERL+ L+ TL+I +TD+F + ++ F + Y
Sbjct: 338 LHNTKGFTEEIQKEGNLDIDSLKQCGERLNLLLNTLQIAETDKFRPLSSVAQFVMYLVQY 397
Query: 411 TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRL 470
GF +I + + + + ++ L+C D+SLA+K +F +FQSV++TSGT+SPI++YP++
Sbjct: 398 QEGFKVIFQS-NNYEGTLNEKLMTLACFDSSLAMKNIFAQFQSVILTSGTMSPIEIYPKI 456
Query: 471 LNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSI 530
L+F PVV++S + LTR+ I P+++T D ++++F +R++ V+RNYG L+E+
Sbjct: 457 LDFKPVVAKSIDIELTRNSIQPIIVTMSEDGTELTSEFTLRNNEDVSRNYGNFLLELSEN 516
Query: 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDC 590
VPDG++ F SYS M+E + WN + ++K++FIE++DV ET+ L YRK CD
Sbjct: 517 VPDGLIVFMPSYSRMEEWASIWN------KFSKNKVLFIESKDVAETSQKLQQYRKCCDV 570
Query: 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
GRGA FS+ARGK+AEGIDF+ HYGR V + G P
Sbjct: 571 GRGAALFSIARGKIAEGIDFEGHYGRCVAVIGFP 604
>gi|407426334|gb|EKF39660.1| TFIIH basal transcription factor complex helicase subunit, putative
[Trypanosoma cruzi marinkellei]
Length = 780
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 265/622 (42%), Positives = 393/622 (63%), Gaps = 31/622 (4%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M ELK+ LD GH +LEMP+GTGKT LLSL+ +Y+ + K+IYCTRTV EM KT+
Sbjct: 1 MTELKKGLDHGGHIVLEMPSGTGKTTTLLSLLIAYIHHHADEKRKVIYCTRTVEEMTKTM 60
Query: 85 AEL-KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR 143
EL KLL + T + + L+++KNLC+ S V + + VDA CR TA W
Sbjct: 61 GELRKLLELWNTDESVSNRPLRGLCLTAKKNLCIESTVASQRYPEDVDAGCRSLTAPWQT 120
Query: 144 ALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFAN 203
+ C +F+N E LPPG Y+++DL+ FG+ CPY+L R ++ +
Sbjct: 121 S--------NRCAYFDNLE--CIPFELPPGAYSVEDLKQFGESHQLCPYYLVRKALRVVD 170
Query: 204 VVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
+VV+S+ Y++DP VA + + ++VV DE HN+D+VCIEA+S+ + ++ A N+
Sbjct: 171 IVVHSFLYIVDPIVAEVTKGYFNENTIVVMDEGHNVDDVCIEAMSLIITKEDAAQAKENV 230
Query: 264 SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWL---SNPALPSDILKEAVP 320
++N + KAT+ +L+ EY+RLV GLA+ D + P +PSDI +EA+P
Sbjct: 231 KQLNAAADHLKATNRQQLQDEYDRLVNGLAMVEMARSVDGMMMPVQAPRIPSDIAEEAIP 290
Query: 321 GNIRRAEHFLHVLRRLVQYL-RGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERL 379
G++R+A HFL ++RLV + R P++F++ + +D + R+ ERL
Sbjct: 291 GSLRQANHFLSFIQRLVDFTHRVVCRISRTYVADPLTFLSKVRDECAVDIRHFRYLTERL 350
Query: 380 HSLMLTLEITDTDEFLHIQTICD-FATLVGTYTR------GFSIIIEPFDERMPHIPDPV 432
LM TL+IT++ +F ++ I + TL YT GF ++ E D P +PDPV
Sbjct: 351 KVLMNTLQITNSHKFRNVALIAQMYMTLSTHYTDDRYEKPGFVVVCEAHDPTRPAVPDPV 410
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP 492
++L C DASLA++ F +++SVV+TSGTLSP+D+YP++L F PV+++SF+M+L+R CI P
Sbjct: 411 IRLVCVDASLALREAFSKYRSVVLTSGTLSPLDIYPKILGFTPVIAKSFQMTLSRKCIAP 470
Query: 493 MVLTRGSDQL-----PVSTKFDMRSDPG----VARNYGKLLVEMVSIVPDGIVCFFVSYS 543
+V+TR ++ + +++ F +R++P V+ Y LL + VPDGIVCFF Y
Sbjct: 471 VVVTRSTESVNITMEEITSSFVVRTNPLAQDIVSAAYEDLLRGLSKTVPDGIVCFFTGYQ 530
Query: 544 YMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGK 603
YM E++ W+ SG LKE+ Q+KL+FIETQ V ET++AL NYR+ACD GRGA+F ++ARGK
Sbjct: 531 YMGEVLLGWHRSGFLKELAQYKLIFIETQSVEETSIALANYRRACDIGRGAIFMAIARGK 590
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
+AEGIDFDRHYGR V+MFGVPF
Sbjct: 591 IAEGIDFDRHYGRAVVMFGVPF 612
>gi|156047833|ref|XP_001589884.1| hypothetical protein SS1G_09606 [Sclerotinia sclerotiorum 1980]
gi|154694001|gb|EDN93739.1| hypothetical protein SS1G_09606 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 616
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 265/603 (43%), Positives = 361/603 (59%), Gaps = 79/603 (13%)
Query: 30 RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89
R LDA GHC+LEMP+GTGKTI+LLSLI +Y PE+ KLIYC+RT+ E+EK LAELK
Sbjct: 2 RTLDAGGHCVLEMPSGTGKTISLLSLIVAYQQYYPEHR-KLIYCSRTMSEIEKALAELKA 60
Query: 90 LHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAEN 149
L Y+ LG +GL+SRKNLC++ V ++ VDA CR TA +V+
Sbjct: 61 LMKYRAEQLGHQEDFRGLGLTSRKNLCLHPSVKREKSGAVVDARCRSLTAGFVKEKKERG 120
Query: 150 PNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
++ C + EN + ++P GV+TL + +G+ CPYF +R M+ F NV++YSY
Sbjct: 121 EDVPVCVYHENLDLLEPHNLIPNGVWTLDGIMRYGEDHKQCPYFTSRRMMSFCNVIIYSY 180
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQE 269
YLLDPK+A +SKE+ K+ +VVFDEAHNIDNVCIE+LS + +L ATR + +
Sbjct: 181 HYLLDPKIAERVSKELSKDCIVVFDEAHNIDNVCIESLSTDITDDSLRKATRGAINLENK 240
Query: 270 IERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHF 329
I + +D+ +L+ EY +LVEGL DA++SNPALP D+LKEAVPGNIRRAEHF
Sbjct: 241 ISDLRDSDSEKLKDEYAKLVEGLRGADEARAEDAFMSNPALPDDLLKEAVPGNIRRAEHF 300
Query: 330 LHVLRRLVQYLRG-RLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEI 388
+ L+R ++YL+ R++ V E P SF+A + H I++K LRFC ERL SL+ TLE+
Sbjct: 301 VTFLKRFIEYLKKTRMKVRQVISETPASFLAHLREHTFIEKKPLRFCAERLTSLVRTLEL 360
Query: 389 TDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVF 448
T+ +++ +Q + FATLV TY +GF +I+EP++ +P+PVL +C DA++A+KPVF
Sbjct: 361 TNIEDYQPLQEVATFATLVATYEKGFLLILEPYESDTAEVPNPVLHFTCLDAAIAIKPVF 420
Query: 449 DRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKF 508
+RF SV+ITSGT+SP+++YP++L+F VV S+ M+L R
Sbjct: 421 ERFSSVIITSGTISPLEMYPKMLDFECVVQESYPMTLAR--------------------- 459
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
G+V FF SY YM+ II T
Sbjct: 460 ------------------------HGMVVFFPSYLYMESIIKT----------------- 478
Query: 569 IETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
YR AC GRGA+ VARGKV+EGIDFD YGR VI GVPFQYT
Sbjct: 479 ---------------YRTACCNGRGAILLCVARGKVSEGIDFDHQYGRTVICIGVPFQYT 523
Query: 629 LSK 631
S+
Sbjct: 524 ESR 526
>gi|145495232|ref|XP_001433609.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400728|emb|CAK66212.1| unnamed protein product [Paramecium tetraurelia]
Length = 702
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 261/627 (41%), Positives = 382/627 (60%), Gaps = 46/627 (7%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY +Y EQ YM LK+ LD KGH +LEMPTGTGKT++LL+ I +Y+
Sbjct: 1 MKFIIDDIEVIFPYKFLYKEQLEYMQALKQTLDEKGHGILEMPTGTGKTVSLLAFILAYL 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+P KLIYCTRTV EMEKTL E++L+ + G A+GLSSR+NLC+N
Sbjct: 61 AQRPNTIKKLIYCTRTVVEMEKTLEEVRLVMKARKAE-GLNDNFTAVGLSSRRNLCINPD 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAAS--AAVLPPGVYTLQ 178
V+ +D VD+ CRKRTA WV+ +E C F++N+EK+A A LP VY+L
Sbjct: 120 VV--NQKDRVDSECRKRTAEWVKRGQSE-----ICIFYDNFEKSAKDFIANLPNDVYSLS 172
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
DLR G CPY+ AR MV+ AN+VVY+Y YL+DP ++ ++SK+ KESVVVFDEAHN
Sbjct: 173 DLRKNGGFSMQCPYYTAREMVKKANIVVYNYLYLIDPGISSLLSKDYIKESVVVFDEAHN 232
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
ID+VCIEA +V + + L A NL + +I+ RL EY +L++ L +
Sbjct: 233 IDDVCIEAYTVRLNKPILAEAINNLKVVETQIQSETNEIQNRLNEEYKKLIKNLEKK--- 289
Query: 299 PIADAWLSNPALPSDILKE-AVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
P L + +PG IR+A +F+ ++R++Q + L + P +
Sbjct: 290 ------------PEGELNQLVIPGQIRKARNFIDFMKRIIQKHQKHLMLFYI---IPKAL 334
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ +D +L+ C ERL+ L+ TL+I +TD+F + T+ F +
Sbjct: 335 LKRYKRKGNLDIDSLKQCGERLNLLLNTLQIAETDKFRPLSTVAQFVIRI---------- 384
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
+ + ++ L+C D+SLA+K +F FQSV++TSGT+SPID+YP++L+F PVV
Sbjct: 385 -------QRTLNEKLMTLACFDSSLAMKNIFASFQSVILTSGTMSPIDIYPKILDFKPVV 437
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
++S + LTR+ I P+++T D ++++F R++ V+RNYG L+E+ VPDG++
Sbjct: 438 AKSIDIELTRNSIQPIIVTMSEDGTELTSEFTFRNNEDVSRNYGNFLLELSENVPDGLIV 497
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
F SYS M+E W L++I ++K++ IE++DV ET+ L YRK CD GRGA F
Sbjct: 498 FMPSYSRMEEWARQWQKDKYLEQISKNKVLLIESKDVNETSQKLQQYRKCCDVGRGAALF 557
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVP 624
S+ARGK+AEGIDF+ HYGR V + G P
Sbjct: 558 SIARGKIAEGIDFEGHYGRCVAVIGFP 584
>gi|71994598|ref|NP_497182.2| Protein Y50D7A.2 [Caenorhabditis elegans]
gi|351059416|emb|CCD73788.1| Protein Y50D7A.2 [Caenorhabditis elegans]
Length = 606
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/454 (50%), Positives = 325/454 (71%), Gaps = 4/454 (0%)
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+DLR+ G+++ CPYF AR + A++VVYSY Y+LDPK+A ++SK+ ++SVVVFDEAH
Sbjct: 27 EDLRSLGREKKICPYFTARQAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAH 86
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGN 297
NIDNVCIE++SV++ ++ + A + L + + R K++++ +L++EY++LVEGL
Sbjct: 87 NIDNVCIESMSVAISQKNADRALQELQSLEGVVNRMKSSNSEKLQSEYDKLVEGLKRTER 146
Query: 298 LPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
D L+NP LP IL EAVPGNIR+A HFL L+R V+Y+R RL T V E P +F
Sbjct: 147 ERANDERLANPVLPDQILHEAVPGNIRQANHFLLFLKRFVEYIRHRLRTHQVLIESPAAF 206
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ I I++K +RFC ERL +L+ TLEITD + + + TLV TY++GFS+I
Sbjct: 207 MKDILDRMCIERKPMRFCAERLSNLVKTLEITDNGDVWALSQVTTLCTLVSTYSKGFSVI 266
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
+EP D V+ LSCHDAS+A++PV RFQSV+ITSGTLSP+++YP++L+F P V
Sbjct: 267 VEPQDGSQL----AVITLSCHDASIAIRPVMSRFQSVIITSGTLSPLEMYPKVLDFDPSV 322
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
SF M+L R C+ P+V+ RG+DQ+ ++++F+ R+D V RNYG L++EM S+VPDG+V
Sbjct: 323 IASFTMTLARPCLSPLVVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLVPDGMVV 382
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ +I W + I+ E+M++KL+FIET D +ET+ AL+ Y +ACD GRGAV F
Sbjct: 383 FFTSYLYMENVIGVWYEQHIIDELMKYKLLFIETNDALETSAALEKYVEACDSGRGAVLF 442
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
SVARGKV+EGIDF H GR VIM G+P+ YT S+
Sbjct: 443 SVARGKVSEGIDFSHHLGRCVIMLGIPYMYTESR 476
>gi|312283017|dbj|BAJ34374.1| unnamed protein product [Thellungiella halophila]
Length = 376
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/249 (92%), Positives = 243/249 (97%)
Query: 383 MLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASL 442
MLTLEITDTD+FL IQT+CDFATLVGTY RGFSIIIEP+DERMPHIPDP+LQLSCHDASL
Sbjct: 1 MLTLEITDTDDFLPIQTVCDFATLVGTYARGFSIIIEPYDERMPHIPDPILQLSCHDASL 60
Query: 443 AVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQL 502
A+KPVFDRFQSVVITSGTLSPIDLYPRLL+F+PVVSRSFKMS+TRDCICPMVLTRGSDQL
Sbjct: 61 AIKPVFDRFQSVVITSGTLSPIDLYPRLLSFNPVVSRSFKMSMTRDCICPMVLTRGSDQL 120
Query: 503 PVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM 562
PVSTKFDMRSDPGV RNYGK LVEMVSIVPDG+VCFFVSYSYMD IIATWN++GILKEIM
Sbjct: 121 PVSTKFDMRSDPGVVRNYGKFLVEMVSIVPDGVVCFFVSYSYMDGIIATWNETGILKEIM 180
Query: 563 QHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFG 622
Q KLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVARGKVAEGIDFDRHYGRLV+MFG
Sbjct: 181 QQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVVMFG 240
Query: 623 VPFQYTLSK 631
VPFQYTLSK
Sbjct: 241 VPFQYTLSK 249
>gi|71032081|ref|XP_765682.1| DNA repair protein Rad3 [Theileria parva strain Muguga]
gi|68352639|gb|EAN33399.1| DNA repair protein rad3, putative [Theileria parva]
Length = 894
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 254/606 (41%), Positives = 367/606 (60%), Gaps = 84/606 (13%)
Query: 105 LAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR--------------------- 143
LA+GL SR+NLC++ V + +R +D C T+ W R
Sbjct: 167 LAVGLCSRRNLCIHPEVSSHADRTKIDEKCCDLTSVWRRMQFEDLEDKKRNEYTLDYEGS 226
Query: 144 ---------ALAAENPNIET------CEFFENYEKAASAAVLPPGVYTLQDLRAF----- 183
+ E P+IE C ++E E+ + +P GVYTL+ L+ +
Sbjct: 227 RPIRRRPSASAVQEIPDIEEFNSMGLCGYYETMERIWNPTFIPSGVYTLEGLKEYCLKYK 286
Query: 184 ----GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII-----------SKEMQKE 228
G+ CPYF AR + AN+VV +YQYL+DPKV+ + K K+
Sbjct: 287 DSRTGRASPICPYFAARRAIDNANIVVLNYQYLIDPKVSDAVFYHLCTENYLKEKREDKD 346
Query: 229 S------VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR 282
S VVVFDEAHNIDNVCIEALSV + +TL+ A +LSR+ + + D L
Sbjct: 347 SKPKLPIVVVFDEAHNIDNVCIEALSVELSTETLDNAYSDLSRLEDNVRELRLRDQELLL 406
Query: 283 AEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRG 342
EY RLVE G++ I + ++ NP L DI+ A+PG+IR+AEHF+ L+ ++ YL+
Sbjct: 407 EEYRRLVETTDF-GSIDI-EGYM-NPVLRQDIVDRAIPGSIRKAEHFISFLKVVIGYLKK 463
Query: 343 RLETENVEKEGPVSFVASITAH-----------------AGIDQKTLRFCYERLHSLMLT 385
++ + + EGP+ F+ + GI+ + Y R+ SL+ T
Sbjct: 464 YIKVKEAKSEGPLMFLYRFESQCKFKHLHNLHTIKFEHETGINSDVMEHTYNRMKSLLNT 523
Query: 386 LEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVK 445
L++T + + + DF TLVGTY GF +I++PF + + DP+LQ SC DAS+A+K
Sbjct: 524 LKMTAVGDLTSLHLVVDFCTLVGTYYNGFIVIVDPFPKATSY--DPLLQFSCLDASIAMK 581
Query: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
V D FQSV++TSGT+SP++ YP++LNF PV+ +S MSL RDC+CP+++++G++Q+ +S
Sbjct: 582 SVIDNFQSVILTSGTISPLEFYPKILNFTPVLMQSLPMSLDRDCLCPIIVSKGANQVHMS 641
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
TKFD+R+D V RNYG L++++ +PDG+VCFF SY+YM+ I++ W ++GIL IM+HK
Sbjct: 642 TKFDLRTDITVLRNYGSLVIDLCKHIPDGVVCFFPSYAYMELILSHWYETGILASIMEHK 701
Query: 566 LVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
LVF+ET+D V TTLAL NYR+ACD GRGA+F S+ RGKVAEGIDF+ HYGR VI+ G+PF
Sbjct: 702 LVFMETKDSVTTTLALYNYRRACDVGRGALFLSICRGKVAEGIDFNSHYGRCVILVGIPF 761
Query: 626 QYTLSK 631
QYTLSK
Sbjct: 762 QYTLSK 767
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 72/97 (74%), Gaps = 1/97 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
F ++ + V+FPY IYPEQ +YM LK ALD+KGH +LEMPTGTGKT+AL S ++SY L+
Sbjct: 4 FWIDGIEVFFPYPKIYPEQIAYMKSLKTALDSKGHAVLEMPTGTGKTVALFSFVSSYQLA 63
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG 99
+PE KL+YCTRT+HEMEK L EL + +Y+ L
Sbjct: 64 RPELG-KLVYCTRTIHEMEKALLELSEVISYRNSQLN 99
>gi|387593145|gb|EIJ88169.1| TFIIH helicase [Nematocida parisii ERTm3]
Length = 730
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 255/658 (38%), Positives = 390/658 (59%), Gaps = 57/658 (8%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MI K+ ++ V+FP + IYPEQ Y+ EL + AKGHCL+EMPTGTGKTI LLS + SY
Sbjct: 1 MIIKMGNIEVFFPKNKIYPEQMQYIKELHEVVQAKGHCLIEMPTGTGKTIVLLSFLVSYQ 60
Query: 61 L-----------------SKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK 103
+ + E K++YCTRT E+EK L ELK L+ Y ++ P +
Sbjct: 61 IHLMTKEEGYERIQKNGFKRKEGIFKIVYCTRTTAEIEKVLEELKELYEYIKTYI-PDIE 119
Query: 104 ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEK 163
+GL++R+ LC+N + A + V+ CR+ E C F++ Y K
Sbjct: 120 YTGLGLAARRTLCLNPDINAVSSL--VNRRCRQEK--------------EECSFYKEYLK 163
Query: 164 AASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISK 223
A +P GVYTL DL+ G ++G C Y+ AR + A+ +VY+Y Y++DP++ ++S
Sbjct: 164 TAEG--MPSGVYTLDDLKEIGNKKGTCAYYTARSSIFLADCIVYTYNYMIDPRINDLVSS 221
Query: 224 EMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEI--ERFKATDAGRL 281
+ VVVFDEAHNID+VC+E L+V + R L+ A ++LS I++ + + +
Sbjct: 222 GLGSNCVVVFDEAHNIDSVCVEVLTVHINRACLDKAWKSLSDISEYSVSKSLSLNNRNKE 281
Query: 282 RAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLR 341
+ YN+ G +R + + L S VPG +R F+ +R++++ +
Sbjct: 282 KTAYNK---GKGIRSDF----SSLLEGHKSSRKFTSLVPGTLRSINGFISAAKRIIEFFK 334
Query: 342 GRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITD-TDEFLHIQTI 400
+L+ N+ E F+ ++ +D ++ RL +M LE+ +++ + +
Sbjct: 335 TKLKNVNLTTETTDVFIKNLENTVYVDFSSIVHLSRRLREIMGELEMHGFIEDYSELSRV 394
Query: 401 CDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGT 460
CDF +L G + +GFS++ EPF+ + +PVL LSC D+S+A+K VF + +V+ITSGT
Sbjct: 395 CDFCSLCGQFKKGFSVVFEPFNSY--SVYEPVLHLSCLDSSIAMKHVFSGYNNVIITSGT 452
Query: 461 LSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQL--------PVSTKFDMRS 512
LSPI +YPRLL+F P+ S +S R + +++T+GSDQ+ +S+ F +R+
Sbjct: 453 LSPISIYPRLLDFTPIKSVEIDVSSKRG-LHALIVTKGSDQMTLAMDGSNALSSTFSLRA 511
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ 572
+P V RNYG LL+EM VPDG+VCFF SY YM+E +A W +SGI+K+IM+ KL+F+E+
Sbjct: 512 EPAVVRNYGNLLLEMSMSVPDGLVCFFPSYKYMEEAVAAWTESGIIKKIMECKLIFVESF 571
Query: 573 DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
+ ET ALD Y++AC+ GRG + SVARGKV+EG+DF YGR V++FGVPFQYT S
Sbjct: 572 EHAETERALDGYKRACETGRGGLMLSVARGKVSEGVDFSGCYGRAVLVFGVPFQYTES 629
>gi|387596142|gb|EIJ93764.1| TFIIH helicase [Nematocida parisii ERTm1]
Length = 730
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 254/658 (38%), Positives = 389/658 (59%), Gaps = 57/658 (8%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MI K+ ++ V+FP + IYPEQ Y+ EL + AKG CL+EMPTGTGKTI LLS + SY
Sbjct: 1 MIIKMGNIEVFFPKNKIYPEQMQYIKELHEVVQAKGQCLIEMPTGTGKTIVLLSFLVSYQ 60
Query: 61 L-----------------SKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK 103
+ + E K++YCTRT E+EK L ELK L+ Y ++ P +
Sbjct: 61 IHLMTKEEGYERIQKNGFKRKEGIFKIVYCTRTTAEIEKVLEELKELYEYIKTYI-PDIE 119
Query: 104 ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEK 163
+GL++R+ LC+N + A + V+ CR+ E C F++ Y K
Sbjct: 120 YTGLGLAARRTLCLNPDINAVSSL--VNRRCRQEK--------------EECSFYKEYLK 163
Query: 164 AASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISK 223
A +P GVYTL DL+ G ++G C Y+ AR + A+ +VY+Y Y++DP++ ++S
Sbjct: 164 TAEG--MPSGVYTLDDLKEIGNKKGTCAYYTARSSIFLADCIVYTYNYMIDPRINDLVSS 221
Query: 224 EMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEI--ERFKATDAGRL 281
+ VVVFDEAHNID+VC+E L+V + R L+ A ++LS I++ + + +
Sbjct: 222 GLGSNCVVVFDEAHNIDSVCVEVLTVHINRACLDKAWKSLSDISEYSVSKSLSLNNRNKE 281
Query: 282 RAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLR 341
+ YN+ G +R + + L S VPG +R F+ +R++++ +
Sbjct: 282 KTAYNK---GKGIRSDF----SSLLEGHKSSRKFTSLVPGTLRSINGFISAAKRIIEFFK 334
Query: 342 GRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITD-TDEFLHIQTI 400
+L+ N+ E F+ ++ +D ++ RL +M LE+ +++ + +
Sbjct: 335 TKLKNVNLTTETTDVFIKNLENTVYVDFSSIVHLSRRLREIMGELEMHGFIEDYSELSRV 394
Query: 401 CDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGT 460
CDF +L G + +GFS++ EPF+ + +PVL LSC D+S+A+K VF + +V+ITSGT
Sbjct: 395 CDFCSLCGQFKKGFSVVFEPFNSY--SVYEPVLHLSCLDSSIAMKHVFSGYNNVIITSGT 452
Query: 461 LSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQL--------PVSTKFDMRS 512
LSPI +YPRLL+F P+ S +S R + +++T+GSDQ+ +S+ F +R+
Sbjct: 453 LSPISIYPRLLDFTPIKSVEIDVSSKRG-LHALIVTKGSDQMTLAMDGSNALSSTFSLRA 511
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ 572
+P V RNYG LL+EM VPDG+VCFF SY YM+E +A W +SGI+K+IM+ KL+F+E+
Sbjct: 512 EPAVVRNYGNLLLEMSMSVPDGLVCFFPSYKYMEEAVAAWTESGIIKKIMECKLIFVESF 571
Query: 573 DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
+ ET ALD Y++AC+ GRG + SVARGKV+EG+DF YGR V++FGVPFQYT S
Sbjct: 572 EHAETERALDGYKRACETGRGGLMLSVARGKVSEGVDFSGCYGRAVLVFGVPFQYTES 629
>gi|299470447|emb|CBN78439.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 824
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 199/321 (61%), Positives = 263/321 (81%)
Query: 310 LPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQ 369
LP+DIL+EAVPGNIRRAEHF+ +R++V++ + R+ ++VE E P++FV + +++
Sbjct: 353 LPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALER 412
Query: 370 KTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIP 429
K L+F Y RL+SL+ TLE+T D+F + + DFATLVGTYT GF+++IEP +P +
Sbjct: 413 KPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVGTYTEGFAVVIEPTGSVVPGVY 472
Query: 430 DPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDC 489
+PV++L+C DASLA++PVF+RF SVVITSGTLSP+DLYP+LL F PVV + MS R C
Sbjct: 473 EPVMRLACLDASLAIRPVFERFASVVITSGTLSPLDLYPKLLGFSPVVRTALSMSTVRKC 532
Query: 490 ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
ICP+V+TRGSDQLP+STKFD R DP V RNYG L++E+ +IVPDG+VCFF SYSYM+ I+
Sbjct: 533 ICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIELAAIVPDGVVCFFTSYSYMEMIV 592
Query: 550 ATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609
+ W++ G+LK +++ KL+FIET+DVVETTLALDN+++ACDCGRGA+F SVARGKVAEGID
Sbjct: 593 SKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAIFLSVARGKVAEGID 652
Query: 610 FDRHYGRLVIMFGVPFQYTLS 630
FDRHYGR V+MFGVPFQYTLS
Sbjct: 653 FDRHYGRAVVMFGVPFQYTLS 673
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/297 (59%), Positives = 222/297 (74%), Gaps = 2/297 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M L+ + V+FPYD +YPEQY YMLELKR+LDAKGHCLLEMPTGTGKT+ L+SLITSY
Sbjct: 1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA-KILAIGLSSRKNLCVNS 119
+ PE KLIYCTRTV EM K + ELK + Y+ LGP K+LA+ LSSR+NLC++
Sbjct: 61 FAHPEVG-KLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKVLALCLSSRRNLCIHE 119
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
RV+ +R++VD ACR TASWVR A E CEFFE Y S A +P G+Y+L D
Sbjct: 120 RVIEESDREAVDGACRDMTASWVRKKAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDD 179
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L+ FGK++GWCPYFLARH++ ANV+VY+YQY+LDPKVAG++S+E++ ESVVVFDEAHNI
Sbjct: 180 LKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNI 239
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRG 296
DNVC EALSV + +++L+ A+R L +I+ ++ K TD RL AEY RLV GLA G
Sbjct: 240 DNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSG 296
>gi|84999674|ref|XP_954558.1| rad3-like DNA helicase-related [Theileria annulata]
gi|65305556|emb|CAI73881.1| rad3-like DNA helicase-related, putative [Theileria annulata]
Length = 894
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/516 (44%), Positives = 334/516 (64%), Gaps = 38/516 (7%)
Query: 148 ENPNIET------CEFFENYEKAASAAVLPPGVYTLQDLRAF---------GKQQGWCPY 192
E P+IE C ++E E+ + +P GVYTL+ L+ + G+ CPY
Sbjct: 259 EIPDIEEFNSMGLCGYYETIERIWNPTFMPSGVYTLEGLKEYCLNFKDPRTGRPSPICPY 318
Query: 193 FLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES-----------------VVVFDE 235
F AR + AN+VV +YQYL+DPKV+ + + ES VVVFDE
Sbjct: 319 FAARRAIDDANIVVLNYQYLIDPKVSDAVFYHLCTESYLKEKRDDKDSKPKLPIVVVFDE 378
Query: 236 AHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALR 295
AHNIDNVCIEALSV + +TL+ A +LSR+ + + D L EY RLVE
Sbjct: 379 AHNIDNVCIEALSVELSTETLDNAYSDLSRLENSVRELRLRDEELLLEEYRRLVETTDF- 437
Query: 296 GNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPV 355
G+ I + ++ NP L DI+ +PG+IR+AEHF+ L+ ++ YL+ ++ + + EGP+
Sbjct: 438 GSADI-EGYM-NPLLRQDIVDRVMPGSIRKAEHFISFLKVVIGYLKKYIKVKEPKSEGPL 495
Query: 356 SFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFS 415
F+ GI + Y R SL+ TL++T + + DF +LVGTY +GF
Sbjct: 496 MFLYRFQNETGIISDVFQHTYNRFKSLLNTLKMT-VGNLTALHLVIDFCSLVGTYYKGFI 554
Query: 416 IIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHP 475
II++PF + + DPV+Q SC DAS+A+KPV + FQSV++TSGT+SP++ YP++LNF P
Sbjct: 555 IIVDPFPKSAAY--DPVIQFSCLDASVAMKPVLENFQSVILTSGTMSPLEFYPKILNFSP 612
Query: 476 VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGI 535
++++S MSL R+C+CP+++++G +Q+ ++TKFD+R D + RNYG L++E+ +PDG+
Sbjct: 613 ILTQSLPMSLDRECLCPIIVSKGDNQVHMTTKFDLRKDITLLRNYGSLVIELCKSIPDGV 672
Query: 536 VCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAV 595
VCFF SY+YM+ I++ W ++GIL IM HKLVFIET++ + T+LAL NYR+ACD GRG +
Sbjct: 673 VCFFPSYAYMELILSHWYETGILSSIMSHKLVFIETKESISTSLALHNYRRACDAGRGGL 732
Query: 596 FFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
F SV RGKVAEGIDFD HYGR VI+ G+PFQYTLS+
Sbjct: 733 FLSVCRGKVAEGIDFDMHYGRCVILIGIPFQYTLSR 768
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 72/97 (74%), Gaps = 1/97 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
F +E + VYFPY IYPEQ +YM LK LD+KGH +LEMPTGTGKT+AL S ++SY L+
Sbjct: 4 FWIEGIEVYFPYPKIYPEQIAYMKSLKNVLDSKGHAVLEMPTGTGKTVALFSFVSSYQLA 63
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG 99
KPE KL+YCTRT+HEMEK L EL ++ +Y+ L
Sbjct: 64 KPELG-KLVYCTRTIHEMEKALNELSVVISYRNSQLN 99
>gi|78190773|gb|ABB29708.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH [Aphrocallistes vastus]
Length = 413
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 203/391 (51%), Positives = 282/391 (72%)
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVC+E++SV + R TL GA +NL ++ EIER K DA +LR EY RLV+GL
Sbjct: 1 NVCVESMSVKLTRTTLAGALKNLQTLSSEIERIKQEDANKLRQEYLRLVQGLREARIAKE 60
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
AD ++ +P LP IL+EAVPGNIR+AEHFL+ ++R V+YL+ R+ + V E P F+
Sbjct: 61 ADQYIGSPVLPDAILEEAVPGNIRKAEHFLNFMKRFVEYLKSRMRSTRVISETPPLFLTH 120
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K L+FCYERL SL+ +I + +F H+ + +FATLV TY +GF ++IEP
Sbjct: 121 ASKTVCIERKPLKFCYERLKSLLSATDIYNITDFSHLIXVANFATLVATYEKGFMMLIEP 180
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
+ + P +PV+ LSC DAS+A K +F RFQSV++TSGTLSP+D+YP+LL F+PV++ S
Sbjct: 181 YTDLNPTAHNPVMHLSCLDASVASKSIFQRFQSVILTSGTLSPLDMYPKLLAFNPVLTIS 240
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
MSL+R C CP+V++RG+DQ+ ++TKF R D V RNYG LL E+ IVPDG+VCFF
Sbjct: 241 LSMSLSRPCACPLVISRGNDQMAITTKFGDREDANVVRNYGNLLSELSHIVPDGMVCFFT 300
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY+YM+ ++A W + GIL +I ++KL+FIETQ+ ET LAL NY +AC+ GRGAV SVA
Sbjct: 301 SYTYMESVVAAWCEQGILSKIQKNKLIFIETQNSNETRLALTNYWRACEKGRGAVLLSVA 360
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
RGKV+EG+DF HYGR ++M G+P+ YT S+
Sbjct: 361 RGKVSEGVDFTGHYGRCIVMLGLPYVYTQSR 391
>gi|331231040|ref|XP_003328184.1| TFIIH basal transcription factor complex helicase subunit [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
Length = 576
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 252/606 (41%), Positives = 339/606 (55%), Gaps = 121/606 (19%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ------- 94
MP+GTGKTI+LLSLI +Y L PE KL+YC+RTV E+EK L ELK L Y+
Sbjct: 1 MPSGTGKTISLLSLIVAYQLYYPERR-KLVYCSRTVPEIEKALIELKRLMAYRAAQHRLR 59
Query: 95 ---TRHLGPAAK--ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAEN 149
T + P + L +GL+SRKNLC++ +V + VDA CR T++W +
Sbjct: 60 AGLTDNSAPTNEDDFLGVGLTSRKNLCIHPQVSREKKGKVVDARCRDLTSAWACEKGRAD 119
Query: 150 P-NIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYS 208
P ++ C+F E + ++P GV+TL+++ A+G Q G CPYF R MV
Sbjct: 120 PGSVPLCDFHEKLGELEPGNLIPRGVWTLEEITAYGHQHGICPYFAVRRMV--------- 170
Query: 209 YQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQ 268
A +SKE+ S+VVFDEAHNIDNVCIE+LS+ + + L+ A +++ +++
Sbjct: 171 ---------ATQVSKELLPNSIVVFDEAHNIDNVCIESLSIDLTKGMLDNAGKSIGALDE 221
Query: 269 EIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD---AWLSNPALPSDILKEAVPGNIRR 325
+I K TDA +L+ EY RLV GL N ++ A L NP LP D+L+EAVPGNIRR
Sbjct: 222 KIREIKRTDASKLQNEYERLVRGLGQSENTFESEEEAAILGNPVLPEDLLQEAVPGNIRR 281
Query: 326 AEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLT 385
AEHF L R V+YL+ V +T ID+K LRFC +RL SL+ T
Sbjct: 282 AEHFTAFLTRFVEYLK---------------HVKDLTY---IDRKPLRFCADRLTSLIRT 323
Query: 386 LEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVK 445
LE+TD D++ +Q + FATLV TY +G I PV D L
Sbjct: 324 LELTDLDQYNALQKVASFATLVATYEKG-------------KISGPV----GLDVLLGTN 366
Query: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
P F+ F SV+I G ++P
Sbjct: 367 PFFEGFSSVIIPWGPINP------------------------------------------ 384
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
V RN+G +L+E IVPDGIV FF SY YM+ I+A W+D GILKE+ ++K
Sbjct: 385 ---------SVVRNFGTILIEYCKIVPDGIVAFFPSYLYMESIVAAWHDMGILKEVWKYK 435
Query: 566 LVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L+F+ET D VET++AL+NYR+ACD G+GAV SVARGKV+EGIDFD +YGR VIMFG+P+
Sbjct: 436 LIFVETPDAVETSIALENYRRACDNGKGAVLLSVARGKVSEGIDFDHNYGRAVIMFGIPY 495
Query: 626 QYTLSK 631
QYT S+
Sbjct: 496 QYTESR 501
>gi|378755713|gb|EHY65739.1| TFIIH helicase [Nematocida sp. 1 ERTm2]
Length = 627
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 241/631 (38%), Positives = 359/631 (56%), Gaps = 59/631 (9%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MI K+ ++ V+FP +NIY EQ Y+ EL + KGHCL+EMPTGTGKTI LLS + SY
Sbjct: 1 MIIKMGNIEVFFPKNNIYQEQMQYIKELYEVVQDKGHCLIEMPTGTGKTIVLLSFLMSYQ 60
Query: 61 L-----------------SKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK 103
+ + E K+IYCTRT E+EK L ELK L++Y ++ P
Sbjct: 61 IHLMTKEEGYEKIREKGFKRREGVFKIIYCTRTTAEIEKVLEELKELYDYIKTYI-PDLD 119
Query: 104 ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEK 163
+GL++R+ LC+N + A + V+ CR+ E C F++ Y K
Sbjct: 120 YTGLGLAARRTLCLNPDINA--DPSLVNKRCRQEK--------------EDCTFYKEYLK 163
Query: 164 AASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISK 223
+P G++TL L+ G Q C Y+ AR + A+ VVY+Y Y++DP+++ ++S
Sbjct: 164 MTEN--IPSGIHTLDGLKEIGTQTNRCAYYTARSSIFLADCVVYTYNYMIDPRISELVSS 221
Query: 224 EMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEI--ERFKATDAGRL 281
VVVFDEAHNID+VC+E L+V + R L+ A ++L I+ + R
Sbjct: 222 GFGSNCVVVFDEAHNIDSVCVEVLTVHINRTCLDKAWKSLCTISDYMVSRNISLNRNERE 281
Query: 282 RAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLR 341
R+ YNR G ++ + A L S VPG +R F+ +R++++ +
Sbjct: 282 RSMYNR---GKGIKSDY----ASLLEGHKSSRKFTSLVPGTLRNISGFISATKRIIEFFK 334
Query: 342 GRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITD-TDEFLHIQTI 400
+L+ N+ E FV ++ ID +L RL +M LE+ TD++ + +
Sbjct: 335 TKLKNVNLTTETTEVFVKTLENTVFIDFSSLIHLSRRLREIMGELEMHGFTDDYSELSRV 394
Query: 401 CDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGT 460
CDF +L G + +GFS+I EPF+ I +PVL LSC D+S+A+K VF + +V+ITSGT
Sbjct: 395 CDFCSLSGQFKKGFSVIFEPFNSY--SIYEPVLHLSCLDSSIAMKRVFSGYNNVIITSGT 452
Query: 461 LSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQL--------PVSTKFDMRS 512
LSPI +YPRLL+F PV S +S R + +++T+GSDQ+ +S+ F +R+
Sbjct: 453 LSPISIYPRLLDFTPVKSVEIDVSSKRG-LHALIVTKGSDQMTLAMDGSNAISSTFSLRA 511
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ 572
+P V RNYG LL+EM VPDG+VCFF SY YM+E +A W +SGI+K+IM+ KL+F+E+
Sbjct: 512 EPAVVRNYGNLLLEMAMSVPDGMVCFFPSYRYMEEAVAAWTESGIIKKIMECKLIFVESF 571
Query: 573 DVVETTLALDNYRKACDCGRGAVFFSVARGK 603
D ET AL+ Y++AC+ GRG + RGK
Sbjct: 572 DHAETERALEGYKRACETGRGGTY--AQRGK 600
>gi|326429202|gb|EGD74772.1| TFIIH basal transcription factor complex helicase XPD subunit
[Salpingoeca sp. ATCC 50818]
Length = 523
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 196/341 (57%), Positives = 259/341 (75%)
Query: 291 GLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVE 350
GL L DA ++NP LPS +++EAVPGNIR+AEHF+ L+R V+YL+ RL+ +V
Sbjct: 9 GLQTTRELNATDAVMANPVLPSHVVEEAVPGNIRKAEHFVSFLKRFVEYLKKRLDVNHVV 68
Query: 351 KEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY 410
E P F+ ++ A ID+K LRF ERL SL+ TLE+TD D+F + + FATLV TY
Sbjct: 69 NEPPAVFLDQVSIDAAIDRKPLRFASERLSSLLQTLELTDYDDFSSLMRVATFATLVATY 128
Query: 411 TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRL 470
T GFS+IIEPFD+R P I DPVL SC DASLA++PVF+RFQSVVITSGTLSP+++YP++
Sbjct: 129 TDGFSLIIEPFDDRAPTIRDPVLHFSCMDASLAIRPVFERFQSVVITSGTLSPLEMYPKI 188
Query: 471 LNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSI 530
LNF PV +F M+L+R + PM++T GSDQ +S++++ R D V RNYG LL++M +
Sbjct: 189 LNFRPVTVCTFDMTLSRTSLLPMIVTCGSDQAKISSRYESREDNSVKRNYGHLLLDMARV 248
Query: 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDC 590
VPDGIVCFFVSY Y++ ++ TW+D GI+ +I Q KLVF ETQDVVET++ALDNY++AC+
Sbjct: 249 VPDGIVCFFVSYEYLESMVTTWHDQGIMDKIKQKKLVFAETQDVVETSIALDNYQRACEN 308
Query: 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
GRGA+ SVARGKV+EGIDFD H GR V+MFG+P+ YT S+
Sbjct: 309 GRGAILLSVARGKVSEGIDFDHHLGRAVLMFGIPYVYTQSR 349
>gi|119577746|gb|EAW57342.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 (xeroderma pigmentosum D),
isoform CRA_b [Homo sapiens]
Length = 429
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/413 (50%), Positives = 282/413 (68%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
+ I +K LRFC ERL SL+ TLEITD +F + + +FATLV TY +G
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKG 413
>gi|406700501|gb|EKD03668.1| general RNA polymerase II transcription factor [Trichosporon asahii
var. asahii CBS 8904]
Length = 550
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 185/386 (47%), Positives = 276/386 (71%), Gaps = 6/386 (1%)
Query: 201 FANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGAT 260
+ +V++YS+ YLLDPKVA +S E+ KE++VVFDEAHNI + L+ + RQ+
Sbjct: 3 YVDVIIYSFHYLLDPKVAEQVSAELSKEAIVVFDEAHNIGELSNADLADT--RQS----A 56
Query: 261 RNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVP 320
R++++I +I+ K +DA +L AEY +LV+GLA + D LSNP L D+++EA+P
Sbjct: 57 RSVAKIGDKIDEIKKSDAEKLNAEYQKLVDGLAAANDRREEDDMLSNPVLSEDMIQEAIP 116
Query: 321 GNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLH 380
GNIR+AEHF+ L+R ++YL+ R+ +V E P SF+A + I+++ L+FC ERL
Sbjct: 117 GNIRKAEHFIAFLKRFIEYLKTRMRVLHVVAETPQSFMAHLKEITFIEKRPLQFCAERLT 176
Query: 381 SLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDA 440
SL+ TLE+T+ DE +Q I F TLV TY +GF +I+EP++ +P+P+ +C D
Sbjct: 177 SLIRTLELTNLDEHFALQKIASFGTLVATYEKGFLLILEPYETEHATVPNPIFHFTCLDP 236
Query: 441 SLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
SLA+ PVF+RF SV+ITSGT+SP+D+YP++L F PV+ S+ M+LTR+ PMV+TRGSD
Sbjct: 237 SLAMAPVFERFSSVIITSGTISPLDMYPKMLQFQPVIQESYPMTLTRNAFLPMVITRGSD 296
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
Q+P+S++F++R+DP V RN+G +L++M VPDG+V FF SY YM+ I++ W D GIL E
Sbjct: 297 QVPISSRFEVRNDPAVVRNFGSILIDMAKTVPDGVVAFFPSYLYMESIVSAWYDMGILSE 356
Query: 561 IMQHKLVFIETQDVVETTLALDNYRK 586
+ +HKL+F+ET D +ET++AL NYR+
Sbjct: 357 VWKHKLLFVETPDAMETSIALKNYRE 382
>gi|159467054|ref|XP_001691713.1| hypothetical protein CHLREDRAFT_100548 [Chlamydomonas reinhardtii]
gi|158279059|gb|EDP04821.1| predicted protein [Chlamydomonas reinhardtii]
Length = 341
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 179/232 (77%), Positives = 215/232 (92%)
Query: 400 ICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSG 459
+ DFATLVGTY +GF+II+EP+DER+P +PDPVLQLSC DASLA++PVF +FQ+VVITSG
Sbjct: 2 VADFATLVGTYAKGFAIIMEPYDERLPQVPDPVLQLSCLDASLAMRPVFSKFQTVVITSG 61
Query: 460 TLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARN 519
TLSPIDLYPR+LNF+PV +SF+M+LTRDC+CP+V+TRG+DQ+P+STKF+MRSDPGV RN
Sbjct: 62 TLSPIDLYPRILNFNPVAIQSFQMTLTRDCLCPVVVTRGADQMPLSTKFEMRSDPGVMRN 121
Query: 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTL 579
YG+LLVE+ + VPDGIV FFVSY YMD+II+ W+D GIL+EIMQHKL+FIETQDVVETTL
Sbjct: 122 YGRLLVELAATVPDGIVAFFVSYRYMDQIISKWHDMGILQEIMQHKLIFIETQDVVETTL 181
Query: 580 ALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
ALDN+R+ACD GRGAVF SVARGKVAEGIDFDRHYGR V+MFGVP+QYTLS+
Sbjct: 182 ALDNFRRACDSGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPYQYTLSR 233
>gi|237843395|ref|XP_002370995.1| excision repair protein rad15, putative [Toxoplasma gondii ME49]
gi|211968659|gb|EEB03855.1| excision repair protein rad15, putative [Toxoplasma gondii ME49]
gi|221502303|gb|EEE28036.1| excision repair protein Rad15, putative [Toxoplasma gondii VEG]
Length = 1065
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/378 (51%), Positives = 274/378 (72%), Gaps = 14/378 (3%)
Query: 267 NQEIERFKATDAGRLRAEYNRLVEGLALR---------GNLPIADA---WLSNPALPSD- 313
QE ER +AG A EG +R G + +A+ L++P LP D
Sbjct: 525 GQETERTDGEEAGGGSACVRPEDEGERIREKRKESRDPGRIVVANETLDLLASPLLPDDA 584
Query: 314 ILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLR 373
+L++AVPG+IR+AEHF+ ++RR+V YL+ ++ ++ EGP+SF+ ID L+
Sbjct: 585 LLEQAVPGSIRKAEHFVALMRRIVSYLKSYIKIYELKSEGPLSFLHMFEKETHIDASLLK 644
Query: 374 FCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVL 433
F Y+RL SL TL+IT+ + + + + DF TLV TY GF +I +P+ E + + DP+L
Sbjct: 645 FFYDRLKSLFNTLQITEVESYAPLTLVADFCTLVATYCEGFILICDPYPEAV-GLYDPLL 703
Query: 434 QLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM 493
QLSC DASLA++PV RFQS+++TSGT+SP++LYP+LLNF PV++ SF MSL R+CICP+
Sbjct: 704 QLSCLDASLAMQPVLKRFQSLILTSGTISPLELYPKLLNFVPVITESFPMSLDRNCICPL 763
Query: 494 VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN 553
++ RGSDQ+P+++KF+ R D V RNY LL+++ VPDG+VCFF SYSYM+ ++++W
Sbjct: 764 IVARGSDQIPLTSKFEYRHDMNVLRNYSNLLIDLCKHVPDGLVCFFTSYSYMESVLSSWY 823
Query: 554 DSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRH 613
SG+L +++ +KL+FIET+DVV TTLAL N+R+AC+CGRGAVFFS+ARGKVAEGIDFDRH
Sbjct: 824 HSGVLAQVLDYKLIFIETKDVVATTLALHNFRRACECGRGAVFFSIARGKVAEGIDFDRH 883
Query: 614 YGRLVIMFGVPFQYTLSK 631
+GR V++FGVPFQYTLS+
Sbjct: 884 FGRCVVLFGVPFQYTLSR 901
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 105/188 (55%), Gaps = 47/188 (25%)
Query: 155 CEFFENYEKAASAAVLPPGVYTLQDLR-AFG--------KQQGWCPYFLARHMVQFANVV 205
C ++EN ++ + P GVYT+++L+ A G + +CPYFLAR ++ ANVV
Sbjct: 299 CAWYENLDRYFAPQFFPAGVYTIEELKIAAGNWRHPLLHRNLPFCPYFLARRLLHIANVV 358
Query: 206 VYSYQYLLDPKVA-----------------------------------GIIS--KEMQKE 228
V +YQY+LDPKV+ G +S +E+Q E
Sbjct: 359 VLNYQYILDPKVSQAALLTPLPDGMSSSHTTGGQTRSTYSNPYQRRGFGGVSTPEEVQYE 418
Query: 229 -SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNR 287
SVVVFDEAHNIDNVCIEALSV++ R +E A RNLS++ ++IE K DA RLR EY
Sbjct: 419 GSVVVFDEAHNIDNVCIEALSVNINRSVMEAALRNLSQLAEKIEEVKKEDAERLREEYEN 478
Query: 288 LVEGLALR 295
LV G+ R
Sbjct: 479 LVRGIKRR 486
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 81/106 (76%), Gaps = 1/106 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
++F++++VTVYFPYD IYPEQY+Y+ LK LDAKGH +LEMPTGTGKT+ALLSL+TSY
Sbjct: 2 VVFQIDEVTVYFPYDFIYPEQYAYIRALKHTLDAKGHAVLEMPTGTGKTVALLSLLTSYQ 61
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILA 106
L+ P K++YCTRTV EMEK L ELK + +Y+ + A + A
Sbjct: 62 LAHPRLG-KILYCTRTVPEMEKALLELKGVIDYRIEEIRKARETKA 106
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 104 ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA--LAAENP 150
IL +GLS+R+N+C+N V +R+ +D ACR+ TA WVR L + NP
Sbjct: 166 ILGVGLSARRNMCINPAVYNQPDRERIDEACRQLTAPWVRQQHLTSYNP 214
>gi|221481803|gb|EEE20173.1| excision repair protein Rad15, putative [Toxoplasma gondii GT1]
Length = 1065
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/378 (51%), Positives = 274/378 (72%), Gaps = 14/378 (3%)
Query: 267 NQEIERFKATDAGRLRAEYNRLVEGLALR---------GNLPIADA---WLSNPALPSD- 313
QE ER +AG A EG +R G + +A+ L++P LP D
Sbjct: 525 GQETERTDGEEAGGGSACVRPEDEGERVREKRKESRDPGRIVVANETLDLLASPLLPDDA 584
Query: 314 ILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLR 373
+L++AVPG+IR+AEHF+ ++RR+V YL+ ++ ++ EGP+SF+ ID L+
Sbjct: 585 LLEQAVPGSIRKAEHFVALMRRIVSYLKSYIKIYELKSEGPLSFLHMFEKETHIDASLLK 644
Query: 374 FCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVL 433
F Y+RL SL TL+IT+ + + + + DF TLV TY GF +I +P+ E + + DP+L
Sbjct: 645 FFYDRLKSLFNTLQITEVESYAPLTLVADFCTLVATYCEGFILICDPYPEAV-GLYDPLL 703
Query: 434 QLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM 493
QLSC DASLA++PV RFQS+++TSGT+SP++LYP+LLNF PV++ SF MSL R+CICP+
Sbjct: 704 QLSCLDASLAMQPVLKRFQSLILTSGTISPLELYPKLLNFVPVITESFPMSLDRNCICPL 763
Query: 494 VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN 553
++ RGSDQ+P+++KF+ R D V RNY LL+++ VPDG+VCFF SYSYM+ ++++W
Sbjct: 764 IVARGSDQIPLTSKFEYRHDMNVLRNYSNLLIDLCKHVPDGLVCFFTSYSYMESVLSSWY 823
Query: 554 DSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRH 613
SG+L +++ +KL+FIET+DVV TTLAL N+R+AC+CGRGAVFFS+ARGKVAEGIDFDRH
Sbjct: 824 HSGVLAQVLDYKLIFIETKDVVATTLALHNFRRACECGRGAVFFSIARGKVAEGIDFDRH 883
Query: 614 YGRLVIMFGVPFQYTLSK 631
+GR V++FGVPFQYTLS+
Sbjct: 884 FGRCVVLFGVPFQYTLSR 901
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 105/188 (55%), Gaps = 47/188 (25%)
Query: 155 CEFFENYEKAASAAVLPPGVYTLQDLR-AFG--------KQQGWCPYFLARHMVQFANVV 205
C ++EN ++ + P GVYT+++L+ A G + +CPYFLAR ++ ANVV
Sbjct: 299 CAWYENLDRYFAPQFFPAGVYTIEELKIAAGNWRHPLLHRNLPFCPYFLARRLLHIANVV 358
Query: 206 VYSYQYLLDPKVA-----------------------------------GIIS--KEMQKE 228
V +YQY+LDPKV+ G +S +E+Q E
Sbjct: 359 VLNYQYILDPKVSQAALLTPLPDGMSSSHTTGGQTRSTYSNPYQRRGFGGVSTPEEVQYE 418
Query: 229 -SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNR 287
SVVVFDEAHNIDNVCIEALSV++ R +E A RNLS++ ++IE K DA RLR EY
Sbjct: 419 GSVVVFDEAHNIDNVCIEALSVNINRSVMEAALRNLSQLAEKIEEVKKEDAERLREEYEN 478
Query: 288 LVEGLALR 295
LV G+ R
Sbjct: 479 LVRGIKRR 486
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 81/106 (76%), Gaps = 1/106 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
++F++++VTVYFPYD IYPEQY+Y+ LK LDAKGH +LEMPTGTGKT+ALLSL+TSY
Sbjct: 2 VVFQIDEVTVYFPYDFIYPEQYAYIRALKHTLDAKGHAVLEMPTGTGKTVALLSLLTSYQ 61
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILA 106
L+ P K++YCTRTV EMEK L ELK + +Y+ + A + A
Sbjct: 62 LAHPRLG-KILYCTRTVPEMEKALLELKGVIDYRIEEIRKARETKA 106
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 104 ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA--LAAENP 150
IL +GLS+R+N+C+N V +R+ +D ACR+ TA WVR L + NP
Sbjct: 166 ILGVGLSARRNMCINPAVYNQPDRERIDEACRQLTAPWVRQQHLTSYNP 214
>gi|30584019|gb|AAP36258.1| Homo sapiens excision repair cross-complementing rodent repair
deficiency, complementation group 2 (xeroderma
pigmentosum D) [synthetic construct]
Length = 406
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/389 (50%), Positives = 264/389 (67%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y + P KLIYC+RTV E+EK +
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
EL+ L N+ + G L + LSSRKNLC++ V VD C TAS+VRA
Sbjct: 61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+ ++ C F+E ++ LP G+Y L DL+A G++QGWCPYFLAR+ + ANV
Sbjct: 121 QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV 180
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+ NL
Sbjct: 181 VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 240
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + + R K TD RLR EY RLVEGL DA L+NP LP ++L+EAVPG+IR
Sbjct: 241 TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR 300
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
AEHFL LRRL++Y++ RL ++V +E P +F++ + I +K LRFC ERL SL+
Sbjct: 301 TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH 360
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRG 413
TLEITD +F + + +FATLV TY +G
Sbjct: 361 TLEITDLADFSPLTLLANFATLVSTYAKG 389
>gi|195947407|ref|NP_001124339.1| TFIIH basal transcription factor complex helicase XPD subunit
isoform 2 [Homo sapiens]
gi|30582605|gb|AAP35529.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 (xeroderma pigmentosum D) [Homo
sapiens]
Length = 405
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/389 (50%), Positives = 264/389 (67%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y + P KLIYC+RTV E+EK +
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
EL+ L N+ + G L + LSSRKNLC++ V VD C TAS+VRA
Sbjct: 61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+ ++ C F+E ++ LP G+Y L DL+A G++QGWCPYFLAR+ + ANV
Sbjct: 121 QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV 180
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+ NL
Sbjct: 181 VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 240
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + + R K TD RLR EY RLVEGL DA L+NP LP ++L+EAVPG+IR
Sbjct: 241 TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR 300
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
AEHFL LRRL++Y++ RL ++V +E P +F++ + I +K LRFC ERL SL+
Sbjct: 301 TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH 360
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRG 413
TLEITD +F + + +FATLV TY +G
Sbjct: 361 TLEITDLADFSPLTLLANFATLVSTYAKG 389
>gi|443926997|gb|ELU45534.1| DNA repair helicase RAD3 [Rhizoctonia solani AG-1 IA]
Length = 675
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 241/633 (38%), Positives = 331/633 (52%), Gaps = 140/633 (22%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M +LKR LDA GHC+LEMP+GTGKT++LLSLI SY P KLIYC+RTV E+EK L
Sbjct: 1 MCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQQFYPTKR-KLIYCSRTVPEIEKAL 59
Query: 85 AELKLLHNYQ-TRHLGPAAKI-----LAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRT 138
+ELK L Y+ ++ P +I +GL+SRKNLC+N V + VDA CR T
Sbjct: 60 SELKRLMAYRISQAETPEQRIKEEAFTGLGLTSRKNLCLNPEVSKEKKGKVVDARCRDLT 119
Query: 139 ASWVRALAAENP-NIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARH 197
+S +P N C + E A++P G++TL D+ G+++ CPYF R
Sbjct: 120 SSQAVEKGRNDPGNHPLCAWHEGLNDMEEGALIPAGIHTLADISNMGRERTTCPYFTIRR 179
Query: 198 MVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLE 257
M +RR L
Sbjct: 180 M---------------------------------------------------KLRRAVLH 188
Query: 258 GATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPA-LPSDILK 316
+ L+ + KATDA RL+ EY +LVEGL N D ++NP L L+
Sbjct: 189 DLAKKLTSL------IKATDANRLQEEYEKLVEGLQETENDRAEDVVMANPGVLIVWGLR 242
Query: 317 EAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLR--F 374
+ G +R++ FL + R + + R+ +V E P+SF+ + I+++ LR F
Sbjct: 243 YTLIG-VRKS--FLMIFLR--KQFQTRMRVLHVVAETPLSFLQHLKDITYIERRPLRRVF 297
Query: 375 CYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG----------------FSIII 418
C ERL SL+ TLE+T DE+ +Q + +FATLV TY +G F +I+
Sbjct: 298 CAERLQSLIRTLELTQIDEYSSLQKVANFATLVSTYEKGKHIQAALELRSSVNLGFLLIL 357
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EPF+ +P+P+ +C D SLA+KPVF+RF SVVITS T YP
Sbjct: 358 EPFEGENTTVPNPIFHFTCLDPSLAIKPVFERFSSVVITSET------YP---------- 401
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCF 538
M+LTR+C P+V+TRGSDQ+ +S++F++R+DP V RN+G +L+E IVPDG+V F
Sbjct: 402 ----MTLTRNCFLPLVITRGSDQVAISSRFEVRNDPSVVRNFGSILIEYCKIVPDGVVAF 457
Query: 539 FVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS 598
F SY YM+ I+A W+D ACD GRGAV S
Sbjct: 458 FPSYLYMESIVAAWHD-------------------------------MACDNGRGAVLLS 486
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
VARGKV+EGIDFD +YGR VIMFG+P+QYT S+
Sbjct: 487 VARGKVSEGIDFDHNYGRAVIMFGIPYQYTESR 519
>gi|260941790|ref|XP_002615061.1| hypothetical protein CLUG_05076 [Clavispora lusitaniae ATCC 42720]
gi|238851484|gb|EEQ40948.1| hypothetical protein CLUG_05076 [Clavispora lusitaniae ATCC 42720]
Length = 439
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/434 (43%), Positives = 277/434 (63%), Gaps = 14/434 (3%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+C+LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L Y+ LG + +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIVYCSRTMSEIEKALVELHSLMEYRASELGYVEEFRGLGLTSRKNLCLHPT 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIET------------CEFFENYEKAASAA 168
V VD CR+ T ++ E N+ C F E
Sbjct: 120 VSKERKGAVVDEKCRRLTNGQLKQ-KLEQQNVSQDEMRNHSDQYGLCSFHEKLYDYDQHD 178
Query: 169 VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
++P GVY+ + L + KQ G CPYF R M+ F N+++YSY YLLDPK+A +S+E+ K+
Sbjct: 179 LIPSGVYSFEALLDYCKQAGTCPYFTVRRMLSFCNIIIYSYHYLLDPKIAERVSRELSKD 238
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRL 288
S+V+FDEAHNIDNVCIE+LS+ + TL+ A R +++ + ++ KA D+ +L+ EY +L
Sbjct: 239 SIVIFDEAHNIDNVCIESLSLYLTDDTLKRAGRGANKLAEAVDEMKAQDSAKLQDEYEKL 298
Query: 289 VEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETEN 348
VEGL + +++NPALP D+L+EAVPGNIR+AEHFL L+R ++YL+ R++ +
Sbjct: 299 VEGLRQNEIARDEELFMANPALPQDLLEEAVPGNIRKAEHFLSFLKRFIEYLKTRMKVLH 358
Query: 349 VEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVG 408
V E PVSF+ + I++K LRFC ERL L+ TL++ D D+ ++ I FATLV
Sbjct: 359 VISETPVSFLQHLKELTFIERKPLRFCSERLSLLVRTLDLADVDDLNALKDIATFATLVS 418
Query: 409 TYTRGFSIIIEPFD 422
TY GF +I+EPF+
Sbjct: 419 TYDTGFQLILEPFE 432
>gi|82597077|ref|XP_726529.1| RAD3-like DNA helicase [Plasmodium yoelii yoelii 17XNL]
gi|23481970|gb|EAA18094.1| RAD3-like DNA helicase-related [Plasmodium yoelii yoelii]
Length = 1032
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 157/325 (48%), Positives = 244/325 (75%), Gaps = 2/325 (0%)
Query: 308 PALPSDILKEAV-PGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAG 366
P L DI+K V PGNIR++EHFL+++R +V YL+ + V EGP+SF+
Sbjct: 579 PLLMEDIIKNIVMPGNIRKSEHFLNLMRIVVVYLKKYINIYEVTSEGPLSFLYKCEKDTK 638
Query: 367 IDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMP 426
+D ++ ++RL +L+ TL++ DTD++ + +C+F TL+G Y +GF II EP+ E
Sbjct: 639 LDTSFFKYSFDRLKNLLNTLQVVDTDDYAALNIVCNFCTLIGNYFKGFIIICEPYPE-AT 697
Query: 427 HIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT 486
I DPV+Q +C D+S+A+K V +R++S+++TSGT++P++LYP+LLNF V++ SF MS
Sbjct: 698 GIYDPVIQFACLDSSIAMKSVLNRYKSIILTSGTITPLELYPKLLNFSTVLTASFPMSFD 757
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
R+C+CP+++T+ SD +P+S+++ +R+D V +NYG LLVEM +PDGI+ +F SY YM+
Sbjct: 758 RNCVCPLIVTKSSDLIPLSSQYSLRNDLNVIKNYGFLLVEMCKNIPDGIISYFPSYIYME 817
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAE 606
+++TW + GI+ I+++KL+FIET+D+V TT+AL N++KACD G+GAVF S+ RGK+AE
Sbjct: 818 HVMSTWYELGIISNILEYKLIFIETKDIVSTTIALHNFKKACDLGKGAVFLSICRGKIAE 877
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSK 631
GIDFD+HYG+ VI+FG+P+QYTLS+
Sbjct: 878 GIDFDKHYGKCVILFGIPYQYTLSR 902
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 133/254 (52%), Gaps = 60/254 (23%)
Query: 95 TRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAA------- 147
+ G ++ILA+G+S+R+ +CVN +VL R+ +D CRK TA++VR
Sbjct: 180 SSRFGKNSEILAMGISARRCMCVNDKVLLKHEREKIDEECRKLTATFVREKKYISKKLNN 239
Query: 148 -ENPNIET-----------------------------------CEFFENYEKAASAAVLP 171
N NI+ C +FENY+K ++
Sbjct: 240 FSNSNIDRISDFIIKNKHHIDMEDYFNIYNSKNSINEYNDLGLCGYFENYKKNFVYELIE 299
Query: 172 PGVYTLQDLRAFGKQQG--------WCPYFLARHMVQFANVVVYSYQYLLDPKVAGII-- 221
PGVYT+++L+ K CPYF A+ +++ A VVV +YQY++DPKV+ I
Sbjct: 300 PGVYTIEELKEICKNYKNSENINTPICPYFCAKKIIEIAKVVVLNYQYIIDPKVSKSIFL 359
Query: 222 SKEM------QKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKA 275
K++ +K ++VFDEAHNID+VC+EALSV++ R L AT N++ + ++IE+ +
Sbjct: 360 GKDINNRVNYKKNDIIVFDEAHNIDSVCLEALSVNIDRSILNKATMNITTLFKKIEKSRI 419
Query: 276 TDAGRLRAE-YNRL 288
+ +L+ E YN L
Sbjct: 420 VNENKLKEECYNIL 433
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 91/130 (70%), Gaps = 3/130 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
++F L+++ ++FPYD IYPEQY+YM LK+ LD++GHC+LEMPTGTGKT+A+ SLITSY
Sbjct: 2 VVFYLDNLEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ 61
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
K +N K I+CTRTV EMEK+L ELK + NY+ + ++ S+ N+ +S
Sbjct: 62 YYKNDNS-KFIFCTRTVAEMEKSLIELKKVINYRINIIKKRNELSE--KISKSNIKEDSD 118
Query: 121 VLAAENRDSV 130
+ EN D++
Sbjct: 119 TIKNENSDTI 128
>gi|68073281|ref|XP_678555.1| DNA excision-repair helicase [Plasmodium berghei strain ANKA]
gi|56499060|emb|CAH98515.1| DNA excision-repair helicase, putative [Plasmodium berghei]
Length = 528
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 159/325 (48%), Positives = 243/325 (74%), Gaps = 2/325 (0%)
Query: 308 PALPSDILKEAV-PGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAG 366
P L DI+K V PGNIR++EHFL+++R +V YL+ + V EGP+SF+
Sbjct: 75 PLLMEDIIKNVVMPGNIRKSEHFLNLMRIIVVYLKKYINIYEVTSEGPLSFLYKCEKDTK 134
Query: 367 IDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMP 426
+D ++ ++RL SL+ TL++ DTD++ + +C+F TL+G Y +GF II EP+ E
Sbjct: 135 LDTSFFKYSFDRLKSLLNTLQVVDTDDYSALNIVCNFCTLIGNYFKGFIIICEPYPEA-T 193
Query: 427 HIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT 486
I DPV+Q +C D+S+A+K V +R++S+V+TSGT++P++LYP+LLNF V++ SF MS
Sbjct: 194 GIYDPVIQFACLDSSIAMKSVLNRYKSIVLTSGTITPLELYPKLLNFSTVLTASFPMSFD 253
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
R C+CP+++T+ SD +P+S+++ +R+D V +NYG LLVEM +PDGI+ +F SY YM+
Sbjct: 254 RTCVCPLIVTKSSDLIPLSSQYSLRNDLNVIKNYGFLLVEMCKNIPDGIISYFPSYIYME 313
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAE 606
+++TW + GI+ I+++KL+FIET+D+V TT+AL N++KACD G+GAVF S+ RGK+AE
Sbjct: 314 HVMSTWYELGIISNILEYKLIFIETKDIVSTTIALHNFKKACDLGKGAVFLSICRGKIAE 373
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSK 631
GIDFD+HYG+ VI+FG+P+QYTLS+
Sbjct: 374 GIDFDKHYGKCVILFGIPYQYTLSR 398
>gi|300706996|ref|XP_002995725.1| hypothetical protein NCER_101303 [Nosema ceranae BRL01]
gi|239604928|gb|EEQ82054.1| hypothetical protein NCER_101303 [Nosema ceranae BRL01]
Length = 476
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 193/477 (40%), Positives = 298/477 (62%), Gaps = 31/477 (6%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MI KL+++ VYFPY IYPEQ Y+ ELK +D GH L+EMP+GTGKT+ALLS+ SY+
Sbjct: 1 MIIKLDNLDVYFPYSQIYPEQLQYIKELKSNIDTNGHILIEMPSGTGKTVALLSITVSYI 60
Query: 61 LSKP---ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCV 117
+ VKL+YC+RTV E++K L EL+ L NY +++ L +GL+++K LCV
Sbjct: 61 IHMKRFFNKKVKLVYCSRTVSEIDKALYELENLINYIKQYIN--FDFLGVGLTAKKILCV 118
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
N L++ N +D C+K ++E C+F+ N K + +P GVYTL
Sbjct: 119 NDEALSSRN---IDITCKKLR------------DLEKCDFYTNLYKDFT---IPQGVYTL 160
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
L GK +G CPY++ R+ + + ++Y+Y YL+DPK+ GI+SK++ + +++FDEAH
Sbjct: 161 DKLINIGKSKGICPYYMIRNGLGMCDCIIYTYNYLIDPKIYGIVSKDLGENCIIIFDEAH 220
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGN 297
NID+ CIEAL+ ++R TL+ ATR L I + +E K L EY + ++G
Sbjct: 221 NIDSHCIEALTFEIKRNTLDNATRCLKTIIKLLENKKKEQHNILLKEYQK------MKGT 274
Query: 298 LPI-ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVS 356
L I + + + + E VPGN+R + HF+ VL+RLV++ + +L+T ++ E P S
Sbjct: 275 LNIYTEDTIPHFYAEEEQKFEFVPGNLRDSAHFVGVLKRLVEFFKTKLKTTHLTTETPAS 334
Query: 357 FVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSI 416
F SI +++KTL FC +RL L+ TL+ D D ++ + DF T+V Y++GFS+
Sbjct: 335 FCQSIKDLTFLNKKTLSFCSQRLGLLVQTLDFED-DNLYFLRRVADFGTMVSMYSKGFSV 393
Query: 417 IIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
I EPFD + + +P+L+L+C D+S+A+ VF +F +V+ITSGTLSPI++YP++ F
Sbjct: 394 IFEPFDTQAHTVFNPILRLACLDSSIAISQVFTKFNNVIITSGTLSPIEMYPKIFKF 450
>gi|124507219|ref|XP_001352206.1| DNA excision-repair helicase, putative [Plasmodium falciparum 3D7]
gi|23505236|emb|CAD52016.1| DNA excision-repair helicase, putative [Plasmodium falciparum 3D7]
Length = 1056
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 155/325 (47%), Positives = 246/325 (75%), Gaps = 2/325 (0%)
Query: 308 PALPSDILKEAV-PGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAG 366
P L DI+K V PGNIR++EHFL+++R +V YL+ + ++ EGP+SF+
Sbjct: 603 PLLMEDIIKNVVIPGNIRKSEHFLNLMRIVVVYLKKYINIYDITSEGPLSFLYKFEKDTK 662
Query: 367 IDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMP 426
+D ++C++RL SL+ L+I + +++ + +C+F TL+G Y +GF II EP+ E
Sbjct: 663 LDTSFFKYCFDRLKSLLNNLQIVNIEDYSSLNIVCNFCTLLGNYFKGFIIICEPYPE-AT 721
Query: 427 HIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT 486
I DP++Q +C D+S+A+K V ++++S+++TSGT++P++LYP+LLNF V++ SF MS
Sbjct: 722 GIYDPLIQFACLDSSIAMKTVINKYKSIILTSGTITPLELYPKLLNFKTVLTASFPMSFD 781
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
R+C+CP+++T+GSD +P+S++F +R+D V +NYG LLV+M +PDGIV +F SY YM+
Sbjct: 782 RNCVCPLIVTKGSDLIPLSSQFSLRNDLSVIKNYGILLVDMCKCIPDGIVAYFPSYIYME 841
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAE 606
++I++W + G++ I+++KL+FIET+D+V TT+AL N++KACD G+GAVF S+ RGK+AE
Sbjct: 842 QVISSWYELGVIANILEYKLIFIETKDIVSTTIALHNFKKACDLGKGAVFLSICRGKIAE 901
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSK 631
GIDFD+HYG+ VI+FG+P+QYTLSK
Sbjct: 902 GIDFDKHYGKCVILFGIPYQYTLSK 926
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 138/266 (51%), Gaps = 61/266 (22%)
Query: 91 HNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA---- 146
H + G ++ILAIG+S+R+ +C+N +VL R+ +D CRK TA+++R
Sbjct: 163 HINNLKEFGENSEILAIGISARRCMCINDKVLLKHEREKIDEECRKLTATFIREKKYINN 222
Query: 147 ----------------------------------------AENPNIETCEFFENYEKAAS 166
E NI C ++ENY+K
Sbjct: 223 KIDNEIYHPNVDKISDFILRNRHHLDIEDYFDIYNSRNSLEEYDNIGLCGYYENYKKEFL 282
Query: 167 AAVLPPGVYTLQDLRAFGKQQG--------WCPYFLARHMVQFANVVVYSYQYLLDPKVA 218
++ PGVYT++DL+ K CPYF A+ +++ + V++ +YQY++DPKV+
Sbjct: 283 YDLIKPGVYTIEDLKVLCKNYKNKENVNVPICPYFCAKKIIEISKVIILNYQYVIDPKVS 342
Query: 219 GII--SKEMQKE-------SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQE 269
+ K+M K ++VFDEAHNID+VC+EALSV++ R L A+ N++++ ++
Sbjct: 343 KALFSWKDMNKNVHLKNKNDIIVFDEAHNIDSVCLEALSVNIDRNILNKASMNITKLMKK 402
Query: 270 IERFKATDAGRLRAEYNRLVEGLALR 295
IE+ K + +L+ E N+++E + L+
Sbjct: 403 IEQSKMLNEQKLKEECNKILEKIKLQ 428
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
++F L+DV ++FPYD IYPEQY+YM LK+ LD++GHC+LEMPTGTGKT+A+ SLITSY
Sbjct: 2 VVFNLDDVEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ 61
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ 94
K + K I+CTRTV EMEK+L ELK + Y+
Sbjct: 62 YHKKDEG-KFIFCTRTVAEMEKSLIELKKVIQYR 94
>gi|18026950|gb|AAL55708.1| RAD3-like DNA helicase [Plasmodium falciparum]
Length = 1056
Score = 367 bits (942), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 154/325 (47%), Positives = 246/325 (75%), Gaps = 2/325 (0%)
Query: 308 PALPSDILKEAV-PGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAG 366
P L DI+K V PGNIR++EHFL+++R +V YL+ + ++ EGP+SF+
Sbjct: 603 PLLMEDIIKNVVIPGNIRKSEHFLNLMRIVVVYLKKYINIYDITSEGPLSFLYKFEKDTK 662
Query: 367 IDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMP 426
+D ++C++RL SL+ L+I + +++ + +C+F TL+G Y +GF II EP+ E
Sbjct: 663 LDTSFFKYCFDRLKSLLNNLQIVNIEDYSSLNIVCNFCTLLGNYFKGFIIICEPYPE-AT 721
Query: 427 HIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT 486
I DP++Q +C D+S+A+K V ++++S+++TSGT++P++LYP+LLNF V++ SF MS
Sbjct: 722 GIYDPLIQFACLDSSIAMKTVINKYKSIILTSGTITPLELYPKLLNFKTVLTASFPMSFD 781
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
R+C+CP+++T+GSD +P+S++F +R+D V +NYG LLV+M +PDGIV +F SY YM+
Sbjct: 782 RNCVCPLIVTKGSDLIPLSSQFSLRNDLSVIKNYGILLVDMCKCIPDGIVAYFPSYIYME 841
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAE 606
++I++W + G++ I+++KL+FIET+D+V TT+AL N++KACD G+GAVF S+ RGK+AE
Sbjct: 842 QVISSWYELGVIANILEYKLIFIETKDIVSTTIALHNFKKACDLGKGAVFLSICRGKIAE 901
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSK 631
GIDFD+HYG+ VI+FG+P+QYTLS+
Sbjct: 902 GIDFDKHYGKCVILFGIPYQYTLSR 926
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 138/266 (51%), Gaps = 61/266 (22%)
Query: 91 HNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA---- 146
H + G ++ILAIG+S+R+ +C+N +VL R+ +D CRK TA+++R
Sbjct: 163 HINNLKEFGENSEILAIGISARRCMCINDKVLLKHEREKIDEECRKLTATFIREKKYINN 222
Query: 147 ----------------------------------------AENPNIETCEFFENYEKAAS 166
E NI C ++ENY+K
Sbjct: 223 KIDNEIYHPNVDKISDFILRNRHHLDIEDYFDIYNSRNSLEEYDNIGLCGYYENYKKEFL 282
Query: 167 AAVLPPGVYTLQDLRAFGKQQG--------WCPYFLARHMVQFANVVVYSYQYLLDPKVA 218
++ PGVYT++DL+ K CPYF A+ +++ + V++ +YQY++DPKV+
Sbjct: 283 YDLIKPGVYTIEDLKVLCKNYKNKENVNVPICPYFCAKKIIEISKVIILNYQYVIDPKVS 342
Query: 219 GII--SKEMQKE-------SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQE 269
+ K+M K ++VFDEAHNID+VC+EALSV++ R L A+ N++++ ++
Sbjct: 343 KALFSWKDMNKNVHLKNKNDIIVFDEAHNIDSVCLEALSVNIDRNILNKASMNITKLMKK 402
Query: 270 IERFKATDAGRLRAEYNRLVEGLALR 295
IE+ K + +L+ E N+++E + L+
Sbjct: 403 IEQSKMLNEQKLKEECNKILEKIKLQ 428
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
++F L+DV ++FPYD IYPEQY+YM LK+ LD++GHC+LEMPTGTGKT+A+ SLITSY
Sbjct: 2 VVFNLDDVEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ 61
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ 94
K + K I+CTRTV EMEK+L ELK + Y+
Sbjct: 62 YHKKDEG-KFIFCTRTVAEMEKSLIELKKVIQYR 94
>gi|221054960|ref|XP_002258619.1| dna excision-repair helicase [Plasmodium knowlesi strain H]
gi|193808688|emb|CAQ39391.1| dna excision-repair helicase, putative [Plasmodium knowlesi strain
H]
Length = 1017
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 158/326 (48%), Positives = 248/326 (76%), Gaps = 2/326 (0%)
Query: 307 NPALPSDILKEAV-PGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHA 365
+P L DI++ AV PG+IR++EHFL+++R +V YL+ + + EGP+SF+
Sbjct: 563 SPILMEDIVRNAVIPGHIRKSEHFLNLMRIVVMYLKKYVNIYEITSEGPLSFLYKCERET 622
Query: 366 GIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERM 425
+D +FC++RL S++ +L+I + DE+ + +C+F TL+G+Y +GF II EP+ E
Sbjct: 623 KLDTSFFKFCFDRLKSILNSLQIVNVDEYSALNIVCNFCTLLGSYFQGFIIICEPYPE-A 681
Query: 426 PHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSL 485
I DPV+Q +C D+S+A+K V ++++SVV+TSGT++P++LYP+LLNF V++ SF +S
Sbjct: 682 TGIYDPVIQFACLDSSIAMKSVINKYKSVVLTSGTITPLELYPKLLNFKTVLTASFPISF 741
Query: 486 TRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYM 545
R+C+CP+++T+ SD +P+S++F +RSD V +NYG LLVEM +PDGIV +F SY YM
Sbjct: 742 DRNCVCPLIVTKSSDLVPLSSQFSLRSDITVIKNYGMLLVEMCKTIPDGIVAYFPSYIYM 801
Query: 546 DEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVA 605
+E+I++W + GI+ I+++KL+FIET+D+V TT+AL N+++ACD G+GA+F S+ RGK+A
Sbjct: 802 EEVISSWYELGIITSILEYKLIFIETKDIVSTTIALHNFKRACDLGKGAIFLSICRGKIA 861
Query: 606 EGIDFDRHYGRLVIMFGVPFQYTLSK 631
EGIDFD+HYG+ VI+FG+P+QYTLS+
Sbjct: 862 EGIDFDKHYGKCVILFGIPYQYTLSR 887
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 130/259 (50%), Gaps = 61/259 (23%)
Query: 99 GPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIET---- 154
P ILAIG+S+R+ +CVN RVL R+ +D CRK TA++VR N I
Sbjct: 167 APPGDILAIGISARRCMCVNERVLEKHEREKIDEECRKLTATFVREKKYINQKINQMGTA 226
Query: 155 -----------------------------------------CEFFENYEKAASAAVLPPG 173
C ++ENY+K + PG
Sbjct: 227 HRDRDRISEFIVKNRQHIDIEDYFDIYNTRNSMEEYSEIGLCGYYENYKKEFLFDFIEPG 286
Query: 174 VYTLQDLRAFGKQQG--------WCPYFLARHMVQFANVVVYSYQYLLDPKVAG--IISK 223
VYT++DL+ K CPYF A+ +++ A V+V +YQY++DPKV+ I +
Sbjct: 287 VYTIEDLKVICKGYKNEKNENIPMCPYFCAKKIIEVAKVIVLNYQYIIDPKVSKSLFIGR 346
Query: 224 EMQ------KESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATD 277
+M K+ ++VFDEAHNID+VC+EALSV++ R L AT N+ ++ ++IE K +
Sbjct: 347 DMNNRVNLYKKDIIVFDEAHNIDSVCLEALSVNIDRNILNKATGNIKKLLEKIETSKIMN 406
Query: 278 AGRLRAEYNRLVEGLALRG 296
+LR + R+++ L +G
Sbjct: 407 EEKLREDCRRILQELRAQG 425
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
++F L+D+ V+FPYD IYPEQY+YM LK+ LD++GHC+LEMPTGTGKT+A+ SLITSY
Sbjct: 2 VVFHLDDLEVFFPYDYIYPEQYAYMRYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ 61
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK 103
K ++ K I+CTRTV EMEK+L ELK + Y+ L A+
Sbjct: 62 YKKNDDG-KFIFCTRTVAEMEKSLIELKKVIQYRVDTLRKRAQ 103
>gi|355686451|gb|AER98062.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Mustela putorius furo]
Length = 291
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 164/288 (56%), Positives = 221/288 (76%)
Query: 344 LETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDF 403
L ++V +E P +F++ + I +K LRFC ERL SL+ TLEI D +F + + +F
Sbjct: 1 LRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANF 60
Query: 404 ATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSP 463
ATLV TY +GF+IIIEPFD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP
Sbjct: 61 ATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSP 120
Query: 464 IDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKL 523
+D+YP++L+FHPV +F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG L
Sbjct: 121 LDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNL 180
Query: 524 LVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDN 583
L+EM ++VPDGIV FF SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+
Sbjct: 181 LLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEK 240
Query: 584 YRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
Y++AC+ GRGA+ SVARGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 241 YQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 288
>gi|70952870|ref|XP_745573.1| DNA excision-repair helicase [Plasmodium chabaudi chabaudi]
gi|56525940|emb|CAH78123.1| DNA excision-repair helicase, putative [Plasmodium chabaudi
chabaudi]
Length = 970
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 158/325 (48%), Positives = 242/325 (74%), Gaps = 3/325 (0%)
Query: 308 PALPSDILKEAV-PGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAG 366
P L DI+K V PGNIR++EHFL+++R +V YL+ + V EGP+SF+
Sbjct: 518 PLLMEDIIKNVVMPGNIRKSEHFLNLMRIVVVYLKKYINIYEVTSEGPLSFLYKCEKDTK 577
Query: 367 IDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMP 426
+D ++ ++RL SL+ L++ DTD++ + +C+F TL+G Y +GF II EP+ E
Sbjct: 578 LDTSFFKYSFDRLKSLLNALQVVDTDDYSALNVVCNFCTLIGNYFKGFIIICEPYPE-AT 636
Query: 427 HIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT 486
I DPV+Q +C D+S+A+K V +R++SVV+TSGT++P++LYP+LLNF V++ SF MS
Sbjct: 637 GIYDPVIQFACLDSSIAMKSVLNRYKSVVLTSGTITPLELYPKLLNFSTVLTASFPMSFD 696
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
R+C+CP+++T+ SD +P+S+++ +R+D V +NYG LLVEM +PDGI+ +F SY YM+
Sbjct: 697 RNCVCPLIVTKSSDLIPLSSQYSLRNDLNVIKNYGFLLVEMCKNIPDGIISYFPSYIYME 756
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAE 606
+++TW + GI+ I+++KL+FIET+D+V TT+AL N++K CD G+GAVF S+ RGK+AE
Sbjct: 757 HVMSTWYELGIISNILEYKLIFIETKDIVSTTIALHNFKK-CDLGKGAVFLSICRGKIAE 815
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSK 631
GIDFD+HYG+ VI+FG+P+QYTLS+
Sbjct: 816 GIDFDKHYGKCVILFGIPYQYTLSR 840
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 137/389 (35%), Positives = 209/389 (53%), Gaps = 99/389 (25%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
++F L+D+ ++FPYD IYPEQY+YM LK LD++GHC+LEMPTGTGKT+A+ SLITSY
Sbjct: 2 VVFYLDDLEIFFPYDYIYPEQYAYMKYLK-TLDSEGHCVLEMPTGTGKTVAIFSLITSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQT------------------------- 95
K ++ K I+CTRTV EMEK+L ELK + NY+
Sbjct: 61 YYKNDDS-KFIFCTRTVAEMEKSLIELKKVINYRINIIKKRNEISEQIVKTDIKEDSDMI 119
Query: 96 -------------RHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWV 142
G ++ILA+G+S+R+ +CVN +VL R+ +D CRK TA++V
Sbjct: 120 RNEYKNEEDDNAWNRFGRNSEILAMGISARRCMCVNEKVLLKHEREKIDEECRKLTATFV 179
Query: 143 RALA--------AENPNIE-----------------------------------TCEFFE 159
R N NI+ C +FE
Sbjct: 180 REKKYISKKLNNYSNSNIDRISDFIIKNKHHIDMEDYFSIYNSKNSISEYNDLGLCGYFE 239
Query: 160 NYEKAASAAVLPPGVYTLQDLRAFGKQQG--------WCPYFLARHMVQFANVVVYSYQY 211
NY+K ++ PGVYT+++L+ K CPYF A+ +++ A V+V +YQY
Sbjct: 240 NYKKDFVYELIEPGVYTIEELKTLCKNYKNRENMNAPICPYFCAKKIIEIAKVIVLNYQY 299
Query: 212 LLDPKVAGII--SKEM------QKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
++DPKV+ I K++ +K ++VFDEAHNID+VC+EALSV++ R L A+ N+
Sbjct: 300 IIDPKVSKSIFLGKDINNRVNYKKNDIIVFDEAHNIDSVCLEALSVNIDRSILNKASMNI 359
Query: 264 SRINQEIERFKATDAGRLRAEYNRLVEGL 292
+ + ++IE+ + + +LR E ++++ +
Sbjct: 360 TTLFKKIEKSRIVNEDKLREECYKILKKI 388
>gi|156081706|ref|XP_001608346.1| DNA excision-repair helicase [Plasmodium vivax Sal-1]
gi|148800917|gb|EDL42322.1| DNA excision-repair helicase, putative [Plasmodium vivax]
Length = 1041
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 160/326 (49%), Positives = 241/326 (73%), Gaps = 2/326 (0%)
Query: 307 NPALPSDILKEAV-PGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHA 365
+P L D +K V PGNIR++EHFL+++R +V YLR + V EGP+SF+
Sbjct: 587 SPLLMEDAVKNVVLPGNIRKSEHFLNLMRIVVMYLRKYVNIYEVTSEGPLSFLYKCERET 646
Query: 366 GIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERM 425
+D +FC++RL +L+ L+I D++ + +C+F TL+G+Y +GF II EP+ E
Sbjct: 647 KLDTSFFKFCFDRLKALLNALQIVTVDDYSALNVVCNFCTLLGSYFQGFIIICEPYPE-A 705
Query: 426 PHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSL 485
I DPV+Q +C D+S+A+K V +++SV++TSGT++P++LYP+LLNF V++ SF MS
Sbjct: 706 TGIYDPVIQFACLDSSIAMKAVIGKYRSVILTSGTITPLELYPKLLNFKTVLTASFPMSF 765
Query: 486 TRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYM 545
R+C+CP+++T SD +P+S++F +RSD V +NYG LLVEM +PDGIV +F SY YM
Sbjct: 766 DRNCVCPLIVTNSSDLVPLSSQFSLRSDLTVIKNYGMLLVEMCKTIPDGIVAYFPSYIYM 825
Query: 546 DEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVA 605
+E+I++W + GI+ I++ KL+FIET+D+V TT+AL N+++ACD G+GAVF S+ RGK+A
Sbjct: 826 EEVISSWYELGIITSILECKLIFIETKDIVSTTIALHNFKRACDLGKGAVFLSICRGKIA 885
Query: 606 EGIDFDRHYGRLVIMFGVPFQYTLSK 631
EGIDFD+HYG+ VI+FG+P+QYTLS+
Sbjct: 886 EGIDFDKHYGKCVILFGIPYQYTLSR 911
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 141/287 (49%), Gaps = 68/287 (23%)
Query: 94 QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA------- 146
Q R ILAIG+S+R+ +CVN RVL R+ +D CRK TA++VR
Sbjct: 158 QRRSGDLQGDILAIGISARRCMCVNERVLRKHEREKIDEECRKLTATFVREKKYISQRIS 217
Query: 147 ------------------------------------AENPNIETCEFFENYEKAASAAVL 170
E +I C ++ENY+K ++
Sbjct: 218 KLGSTHSDRVSEFIVKNRQHIDVEDYFDIYHTRNSLEEYNDIGLCGYYENYKKEFLFELI 277
Query: 171 PPGVYTLQDLRAFGKQQG--------WCPYFLARHMVQFANVVVYSYQYLLDPKVAG--I 220
PGVYT++DL+ K+ CPYF A+ +++ A V+V +YQY++DPKV+
Sbjct: 278 QPGVYTIEDLKVMCKRYKNAQNETVPICPYFCAKKVIEVAKVIVLNYQYVIDPKVSKSLF 337
Query: 221 ISKE------MQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
I +E + K ++VFDEAHNID+VC+EALSV++ R L AT N+ ++ +IE K
Sbjct: 338 IGREVNSRVNLHKRDIIVFDEAHNIDSVCLEALSVNIDRNVLNKATANIKKLLSKIEASK 397
Query: 275 ATDAGRLRAEYNRLVEGL--ALRGNLPIADAWLSNPALPSDILKEAV 319
+ +LR E R++ + RG + +A S+ +KEAV
Sbjct: 398 VLNEEKLREECTRILRRVREEKRGGEALGEAM-------SEAVKEAV 437
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 76/98 (77%), Gaps = 1/98 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
++F+L+D+ V+FPYD IYPEQY+YM LK+ LD++GHC+LEMPTGTGKT+A+ SLITSY
Sbjct: 2 VVFQLDDLEVFFPYDYIYPEQYAYMRYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ 61
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHL 98
K + K I+CTRTV EMEK+L ELK + Y+ L
Sbjct: 62 HGKNDEG-KFIFCTRTVAEMEKSLIELKKVIQYRVDTL 98
>gi|432108806|gb|ELK33414.1| TFIIH basal transcription factor complex helicase XPD subunit,
partial [Myotis davidii]
Length = 600
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 159/264 (60%), Positives = 209/264 (79%), Gaps = 1/264 (0%)
Query: 369 QKT-LRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPH 427
QKT LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEPFD+R P
Sbjct: 208 QKTVLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPT 267
Query: 428 IPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTR 487
I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+L R
Sbjct: 268 ITNPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLAR 327
Query: 488 DCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDE 547
C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY YM+
Sbjct: 328 VCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMES 387
Query: 548 IIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEG 607
+A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV+EG
Sbjct: 388 TVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEG 447
Query: 608 IDFDRHYGRLVIMFGVPFQYTLSK 631
IDF H+GR VIMFGVP+ YT S+
Sbjct: 448 IDFVHHFGRAVIMFGVPYVYTQSR 471
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 119/281 (42%), Positives = 159/281 (56%), Gaps = 62/281 (22%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++L
Sbjct: 3 LNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSL---------- 52
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
L L+ YQ RV
Sbjct: 53 ------------------------LALIMAYQ-------------------------RVT 63
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
VD C TAS+VRA +P++ C F+E ++ LP G+Y L DL+A
Sbjct: 64 PLRFGKDVDGKCHSLTASYVRAQYQRDPSLPHCRFYEEFDIHGRQVPLPAGIYNLDDLKA 123
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNV
Sbjct: 124 VGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNV 183
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRA 283
CI+++SV++ R+TL+ NL + + + RF A RLR+
Sbjct: 184 CIDSMSVNLTRRTLDRCQGNLETLQKTVLRFCAE---RLRS 221
>gi|441656294|ref|XP_004091106.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit [Nomascus leucogenys]
Length = 546
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 157/259 (60%), Positives = 206/259 (79%)
Query: 373 RFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPV 432
RFC ERL SL+ TLEITD +F + + +FATLV TY +GF+IIIEPFD+R P I +P+
Sbjct: 156 RFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPI 215
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP 492
L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+L R C+CP
Sbjct: 216 LHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCP 275
Query: 493 MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW 552
M++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY YM+ +A+W
Sbjct: 276 MIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASW 335
Query: 553 NDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDR 612
+ GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV+EGIDF
Sbjct: 336 YEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVH 395
Query: 613 HYGRLVIMFGVPFQYTLSK 631
HYGR VIMFGVP+ YT S+
Sbjct: 396 HYGRAVIMFGVPYIYTQSR 414
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 67/130 (51%), Gaps = 26/130 (20%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAK +
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKAY----------------------- 37
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 38 ---PLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 94
Query: 121 VLAAENRDSV 130
L R +V
Sbjct: 95 WLFVTCRCTV 104
>gi|34527746|dbj|BAC85446.1| unnamed protein product [Homo sapiens]
Length = 453
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 161/278 (57%), Positives = 212/278 (76%), Gaps = 5/278 (1%)
Query: 359 ASITAHAGIDQKT-----LRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
A+ AHA + T RFC ERL SL+ TLEITD +F + + +FATLV TY +G
Sbjct: 47 AAGPAHASVCPPTPSLLPARFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKG 106
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
F+IIIEPFD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+F
Sbjct: 107 FTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDF 166
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
HPV +F M+L R C+CPM++ RG+DQ+ +S+K + R D V RNYG LL+EM ++VPD
Sbjct: 167 HPVTMATFTMTLARVCLCPMIIGRGNDQVAISSKLETREDIAVIRNYGNLLLEMSAVVPD 226
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG 593
GIV FF SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRG
Sbjct: 227 GIVAFFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRG 286
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
A+ SVARGKV+EGIDF HYGR VIMFGVP+ YT S+
Sbjct: 287 AILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSR 324
>gi|312098951|ref|XP_003149208.1| TFIIH basal transcription factor complex helicase subunit [Loa loa]
Length = 347
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 168/348 (48%), Positives = 233/348 (66%), Gaps = 1/348 (0%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M ELK+ LDA+GHCLLEMP+GTGKT++LLSL+ +Y+L P++ KL+YC+RT+ E+EK +
Sbjct: 1 MGELKKTLDAQGHCLLEMPSGTGKTVSLLSLVVAYMLRFPDHLDKLVYCSRTIPEIEKCV 60
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
EL+ L Y + G + A+ LS+RKNLC+N V + VD AC+K TAS+VRA
Sbjct: 61 EELRNLFKYYEQCDGKPPSLFAVALSARKNLCINESVSSLRQGSLVDGACQKLTASFVRA 120
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
P++ C FFE ++ L GVY LQ+LR G+Q G CPYFL+R++V A++
Sbjct: 121 KRKLRPDLPCCTFFEKLDEQEDFNHLD-GVYNLQNLRKLGQQNGICPYFLSRNVVDRAHI 179
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY Y+LDPK+A ++SK + S VVFDEAHNIDNVCIE++SVS+ + T+E AT+ L
Sbjct: 180 VVYSYHYILDPKIAELVSKNFSRHSCVVFDEAHNIDNVCIESMSVSLTKTTVEKATQKLG 239
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + ++R + ++ +LR EY+RLVEGL D L+NP LP ILKEAVPG IR
Sbjct: 240 ILEEHVQRLREENSEQLRVEYDRLVEGLKRVEEERTNDQVLANPVLPDMILKEAVPGTIR 299
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTL 372
A HF+ LRR +YL+ R+ T+ V E P +F+ I ID++ L
Sbjct: 300 NALHFISFLRRFNEYLKHRMRTKTVLIENPAAFLRDINDLMHIDRRPL 347
>gi|440295138|gb|ELP88051.1| DNA repair helicase rad3/xp-D, putative [Entamoeba invadens IP1]
Length = 778
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 221/680 (32%), Positives = 359/680 (52%), Gaps = 92/680 (13%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAK----GHCLLEMPTGTGKTIALLSLITS 58
F + V ++FPY IYPEQYS++ + + +K ++EM TGTGKT+++++
Sbjct: 7 FTITGVPIHFPYKYIYPEQYSFIKTVVSGVTSKTPPHKQIVIEMGTGTGKTVSIITAGKG 66
Query: 59 YVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVN 118
+ + N +IYCTRTV EM + ELK+L+ I A+ L+SRK++C
Sbjct: 67 LLGTTGSNVDHVIYCTRTVDEMRQIFKELKVLN------------IPAVALASRKHMC-- 112
Query: 119 SRVLAAENRDSVDAA--CRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT 176
L + RDS A+ C++R S C+++++ E +PP +
Sbjct: 113 ---LLEDVRDSPHASVLCKERRESGF------------CQYYQDIEDIN----IPP-IAG 152
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQK--ESVVVFD 234
+ DL FGK+ CPY+ +R + +V +Y YL+DPKV + +M +++VFD
Sbjct: 153 VDDLVEFGKKNRRCPYYCSRRNFFKSPFIVCTYNYLVDPKVENVTIGKMSDLHRTLLVFD 212
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLAL 294
EAHNIDN ++A ++S+ +T+E AT +L+R+++ + K+ ++ L EYNRLVEGL
Sbjct: 213 EAHNIDNAFVDAQTMSLSLETIELATVSLTRLSKLLTAEKSKES--LEMEYNRLVEGLRR 270
Query: 295 R------GNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETEN 348
G + N A + +PG+ R + F+ +L+R+V + R RL
Sbjct: 271 SQAIYEDGEPYFYNETKKNEAGEDVPYDKVLPGSFRNSSQFVAILKRVVNFFRERLHEAQ 330
Query: 349 VEKEGPVS---------FVASITAHAGIDQKTLRFCYERLHSLMLTL-----EITDT--D 392
+K+ + V + I + ++ RL L+ TL E D D
Sbjct: 331 SKKDQRLKGQHTAQVKDIVTLLCDVLVIPPEIIKSLPTRLRVLIKTLGDEGGERKDVTGD 390
Query: 393 EFLH--IQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR 450
F + + + DFA L+ GFS + + + P+L L C DA+ A + V +
Sbjct: 391 HFYYDALYLVADFAALLCIGQEGFSYVPDVVKNDEDNEVHPILYLVCVDAANAAQNVLTK 450
Query: 451 FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDC-----ICPMVLTRGSDQLPVS 505
+ + TSGTL+P+D + +LL + VV + K ++ C ICP+ +T+G D++ VS
Sbjct: 451 MHTTLFTSGTLAPLDTFIKLLGMNNVVEK--KQIVSPVCGVGRRICPLFVTKGFDRIAVS 508
Query: 506 -----------------TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
T+F R+D + +YGKL+VE+ IVPDGI+CFF SY YM+
Sbjct: 509 SQLADAKMSQLRGDGFSTQFPFRADRLILHSYGKLIVELSKIVPDGILCFFPSYVYMNLC 568
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
I+ W++ ++ I+ +KL+FIE+++ ET++A NYR AC G+GAV +VARG+++EGI
Sbjct: 569 ISHWDEMDVIGNILLNKLLFIESKNAEETSIAFQNYRLACHSGKGAVMLAVARGRLSEGI 628
Query: 609 DFDRHYGRLVIMFGVPFQYT 628
DF H R V++ G P+Q T
Sbjct: 629 DFADHLARAVVIIGAPYQQT 648
>gi|209736390|gb|ACI69064.1| TFIIH basal transcription factor complex helicase subunit [Salmo
salar]
Length = 319
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 158/297 (53%), Positives = 210/297 (70%), Gaps = 3/297 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +E + VYFPYD IYPEQYSYMLELKR LDAKGH +LEMP+GTGKTI+LLSLI +Y
Sbjct: 1 MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
P KLIYC+RTV E+EK + EL+ L + ++ G ILA+ LSSRKNLCV+
Sbjct: 61 REYPLEVTKLIYCSRTVPEIEKVVEELRKLVEFYSKETGEKNNILALALSSRKNLCVHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + VD C TAS++RA NP++ +C F+E ++ LP GVY L DL
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQRQSNPSLPSCRFYEEFDAMGKQVPLPAGVYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ FG+++GWCPY+LAR+ + AN++VYSY YLLDPK+A ++SKE+ K+SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIIVYSYHYLLDPKIADLVSKELSKKSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVE---GLAL 294
NVCI+++SV++ R+TL+ + N+ + I + K TDA +L+ EY RLVE GL+L
Sbjct: 241 NVCIDSMSVNITRRTLDRSQANVETLQNTILKIKETDAAKLKEEYRRLVEDQLGLSL 297
>gi|47221017|emb|CAG12711.1| unnamed protein product [Tetraodon nigroviridis]
Length = 759
Score = 327 bits (839), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 169/368 (45%), Positives = 223/368 (60%), Gaps = 48/368 (13%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
++ + VYFPYD IYPEQYSYMLELKR LDAKGH +LEMP+GTGKTI+LLSLI +Y +
Sbjct: 2 LNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQKA 61
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
P KLIYC+RTV E+EK + EL+ L Y T+ G LA+ LSSRKNLC++ V
Sbjct: 62 FPLEVTKLIYCSRTVPEIEKVVEELRKLLEYYTKQTGENNNFLALALSSRKNLCIHPEVS 121
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFE----------------------- 159
A VD C TAS++RA + N+ C FFE
Sbjct: 122 ALRFGKEVDGKCHSLTASYIRAQRHSDSNVPACRFFEVRPFLVSKTLTLEKCSQTVQTEI 181
Query: 160 ---------------------NYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHM 198
+++ LP G+Y L DL+ FG+++GWCPY+LAR+
Sbjct: 182 LLEKKGPNCSNLPPRGALCLQDFDAVGRQVPLPAGIYNLDDLKDFGRRKGWCPYYLARYS 241
Query: 199 VQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEG 258
+ AN+VVYSY YLLDPK+A ++SKE+ K+SVVVFDEAHNIDNVCI+++SV++ R+TL+
Sbjct: 242 ILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNIDNVCIDSMSVNITRRTLDR 301
Query: 259 ATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEA 318
N+ + + I + K TDA +L+ EY RLVEGL D +LSNP LP +IL+
Sbjct: 302 CQGNVDTLQRTIHKIKETDAAKLKEEYRRLVEGLKEANIARETDVYLSNPVLPDEILQ-- 359
Query: 319 VPGNIRRA 326
G+ RRA
Sbjct: 360 --GSARRA 365
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/208 (48%), Positives = 136/208 (65%), Gaps = 36/208 (17%)
Query: 460 TLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARN 519
TLSP+D+YP++L+F PV SF M+L R C+CP+++ RG+DQ+ +S+KF+ R D V RN
Sbjct: 423 TLSPLDIYPKILDFRPVTMASFTMTLARTCLCPLIIGRGNDQVALSSKFETREDFAVIRN 482
Query: 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS------------------------ 555
YG LL+EM SIVPDGIV FF SY YM+ I+A+W +
Sbjct: 483 YGNLLLEMSSIVPDGIVAFFTSYVYMENIVASWYEQVSVHRRISVCNTACTQIKAYFVFF 542
Query: 556 -GILKEIMQHKLVFIETQDVVETTLALDNYR-----------KACDCGRGAVFFSVARGK 603
GIL+ I ++KL+FIET D ET++AL+ Y+ +AC+ GRGA+ SVARGK
Sbjct: 543 KGILENIQKNKLIFIETPDAAETSMALEKYQEVRDRCHDGHLRACENGRGAILLSVARGK 602
Query: 604 VAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
V+EGIDF H+GR VIMFGVP+ YT S+
Sbjct: 603 VSEGIDFVHHFGRAVIMFGVPYVYTQSR 630
>gi|258563374|ref|XP_002582432.1| DNA repair helicase RAD3 [Uncinocarpus reesii 1704]
gi|237907939|gb|EEP82340.1| DNA repair helicase RAD3 [Uncinocarpus reesii 1704]
Length = 474
Score = 325 bits (834), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 153/318 (48%), Positives = 213/318 (66%), Gaps = 23/318 (7%)
Query: 232 VFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEG 291
VFDEAHNIDNVCIEALS+ + +L A+R + + ++I+ K +DA +L+ EY +LVEG
Sbjct: 10 VFDEAHNIDNVCIEALSIDITEDSLRKASRGANNLERKIDEMKRSDADKLQREYEKLVEG 69
Query: 292 LALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEK 351
L D ++NPALP D+LKEAVP NIRRAEHF+ L+R ++YL+ R++
Sbjct: 70 LREADQAREEDQLMANPALPDDLLKEAVPRNIRRAEHFVAFLKRFIEYLKTRMK------ 123
Query: 352 EGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYT 411
+K LRFC ERL SL+ TLE+ + +++ +Q + FATL TY
Sbjct: 124 -----------------RKPLRFCAERLTSLVRTLELMNIEDYQPLQEVATFATLTATYE 166
Query: 412 RGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLL 471
+GF +I+EPF+ +P+P+L +C DA++A+KPVFDRF SV+ITSGTLSP+++YP++L
Sbjct: 167 KGFLLILEPFESEAATVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKML 226
Query: 472 NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIV 531
F V+ S+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG LL+E I
Sbjct: 227 EFTTVLQESYSMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNLLLEFSRIT 286
Query: 532 PDGIVCFFVSYSYMDEII 549
PDGIV FF SY YM+ II
Sbjct: 287 PDGIVVFFPSYLYMESII 304
>gi|67466685|ref|XP_649489.1| DNA repair helicase [Entamoeba histolytica HM-1:IMSS]
gi|56465941|gb|EAL44103.1| DNA repair helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449708315|gb|EMD47798.1| DNA repair helicase rad3/xpD, putative [Entamoeba histolytica KU27]
Length = 788
Score = 325 bits (833), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 210/679 (30%), Positives = 345/679 (50%), Gaps = 93/679 (13%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRAL-DAKG----HCLLEMPTGTGKTIALLSLIT 57
F + + ++FPY IYPEQY ++ + + D K ++EM TG+GKT+++++
Sbjct: 13 FSVNGIEIHFPYQFIYPEQYQFIKTVTSGVTDNKKPPHKQIIIEMGTGSGKTVSIITAAK 72
Query: 58 SYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCV 117
+ ++ N IYCTRT+ E+++ EL L I +I L+SR +LC+
Sbjct: 73 GLLDNQGSNISHTIYCTRTIDEIKRIFNELTKL------------SIPSIVLASRAHLCL 120
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
V R + L E + C ++ + E P V +
Sbjct: 121 LDDV---------------RESKHASLLCQEKRDKGLCPYYHDIEDEI------PIVAGI 159
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM--QKESVVVFDE 235
+L FGKQ CPYF +R + +V +Y Y+LDPK + +M ++++VFDE
Sbjct: 160 DELVQFGKQHRRCPYFCSRKNFYKSPFIVCTYNYILDPKEENVTVGKMIDLDQTLLVFDE 219
Query: 236 AHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGR--LRAEYNRLVEGL- 292
AHN+DN+ ++A ++++ +T+E AT +L+R+ + + +A + L EY RLVEGL
Sbjct: 220 AHNVDNIVVDAQTLTLSLETIELATISLARLT----KLLSVEASKKPLENEYKRLVEGLR 275
Query: 293 --ALRGNLPIADAWLSNPALPS---DI-LKEAVPGNIRRAEHFLHVLRRLVQYLRGRLET 346
L N+ + + N + DI + +PG R + F+ +++R+V + R +L
Sbjct: 276 RSELTNNIEEGEPYFYNEKKKTPEGDIDYDKVIPGTFRSSSQFVLLMKRIVNFFREKLHE 335
Query: 347 ENVEKEGPVS---------FVASITAHAGIDQKTLRFCYERLHSLMLTL-------EITD 390
+K+ + V + + + + ++F RLH L+ TL +
Sbjct: 336 APTKKQQRIKEQHSIQVKDIVTGLCDSSVLTPEIIKFIPNRLHLLIQTLGDEYGGRQDVK 395
Query: 391 TDEFLH--IQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVF 448
D F + + + DFA L+ + GFS + + VL L C DA+ A++P+
Sbjct: 396 GDSFYYDALYLVADFAALLCSSQEGFSYVPDVVKIDKDDYYHSVLNLVCVDAANAIQPIL 455
Query: 449 DRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDC---ICPMVLTRG------- 498
+RF S+V TSGTLSP+ Y +L VV S T D ICP+ +T+G
Sbjct: 456 NRFHSIVFTSGTLSPLKTYINILGLKNVVEEKQIRSPTSDIGRRICPLFVTKGFDRIAIT 515
Query: 499 ------------SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
SD L +S++F ++D + +YGKL+VE+ VPDG++CFF SY+YM+
Sbjct: 516 SQLADSKYAGARSDPLILSSQFFYKADRLILHSYGKLIVELSKTVPDGVLCFFPSYAYMN 575
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAE 606
I+ WN+ I + I Q+KL+FIE+++ ET+LA NY+ AC G+GAV V RG+++E
Sbjct: 576 ICISYWNEMKIFESIAQNKLIFIESKNAYETSLAFQNYKLACHTGKGAVLLCVTRGRLSE 635
Query: 607 GIDFDRHYGRLVIMFGVPF 625
GIDF H R V++ G P+
Sbjct: 636 GIDFTNHLARAVLIIGAPY 654
>gi|167539830|ref|XP_001741373.1| DNA repair helicase rad3/xp-D [Entamoeba dispar SAW760]
gi|165894074|gb|EDR22158.1| DNA repair helicase rad3/xp-D, putative [Entamoeba dispar SAW760]
Length = 788
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 211/679 (31%), Positives = 343/679 (50%), Gaps = 93/679 (13%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRAL-DAKG----HCLLEMPTGTGKTIALLSLIT 57
F + + ++FPY IYPEQY ++ + + D K ++EM +GTGKT+++++
Sbjct: 13 FSVNGIEIHFPYQFIYPEQYQFIKTVTSGVTDNKKPPHKQIIIEMGSGTGKTVSIITAAK 72
Query: 58 SYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCV 117
+ ++ N IYCTRT+ E+++ EL L I +I L+SR +LC+
Sbjct: 73 GLLDNQGSNISHTIYCTRTIDEIKRVFNELTKL------------SIPSIVLASRTHLCL 120
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
V R + L E + C ++ E P + +
Sbjct: 121 LDDV---------------RESKHAPLLCQEKRDKGLCPYYHEIEDEI------PTIAGI 159
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM--QKESVVVFDE 235
+L FGKQ CPYF +R + +V +Y Y+LDPK + +M ++++VFDE
Sbjct: 160 DELVQFGKQHRQCPYFCSRKNFYKSPFIVCTYNYILDPKEENVTIGKMIDLDQTLLVFDE 219
Query: 236 AHNIDNVCIEALSVSVRRQTLEGATRNLSRINQ--EIERFKATDAGRLRAEYNRLVEGL- 292
AHN+DN+ ++A ++++ +T+E AT +L+R+ + IE K L EY RLVEGL
Sbjct: 220 AHNVDNIVVDAQTLTLSLETIELATISLARLTKLLSIEASKKP----LENEYKRLVEGLR 275
Query: 293 --ALRGNLPIADAWLSNPALPS---DI-LKEAVPGNIRRAEHFLHVLRRLVQYLRGRLET 346
L N+ + + N + D+ + +PG R + F+ +++R+V + R +L
Sbjct: 276 RSELTNNIEEGEPYFYNEKKKTSEGDVDYDKVIPGTFRNSSQFVLLMKRIVNFFREKLHE 335
Query: 347 ENVEKEGPVS---------FVASITAHAGIDQKTLRFCYERLHSLMLTL-------EITD 390
+K+ + V + + + + ++F RLH L+ TL +
Sbjct: 336 APTKKQQRIKEQHSIQVKDIVTGLCDSSVLTPEIIKFIPNRLHLLIQTLGDEYGGRQDVK 395
Query: 391 TDEFLH--IQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVF 448
D F + + + DFA L+ + GFS + + VL L C DA+ A++P+
Sbjct: 396 GDSFYYDALYLVADFAALLCSSQEGFSYVPDVVKIDKDDYYHSVLNLVCVDAANAIQPIL 455
Query: 449 DRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDC---ICPMVLTRG------- 498
+RF S+V TSGTLSP+ Y +L VV S T + ICP+ +T+G
Sbjct: 456 NRFHSIVFTSGTLSPLKTYINILGLKNVVEEKQIRSPTSNVGRRICPLFVTKGFDRIAIT 515
Query: 499 ------------SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
SD L +S++F R+D + +YGKL+VE+ VPDG++CFF SY+YM+
Sbjct: 516 SQLADSKYAGARSDPLILSSQFFYRADRLILHSYGKLIVELSKTVPDGVLCFFPSYAYMN 575
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAE 606
I+ WN+ I + I Q+KLVFIE+++ ET+LA NY+ AC G+GAV V RG+++E
Sbjct: 576 ICISYWNEMKIFESIAQNKLVFIESKNAYETSLAFQNYKLACHTGKGAVLLCVIRGRLSE 635
Query: 607 GIDFDRHYGRLVIMFGVPF 625
GIDF H R V++ G P+
Sbjct: 636 GIDFTNHLARAVLIIGAPY 654
>gi|55845886|gb|AAV66966.1| excision repair cross-complementing 2 [Canis lupus familiaris]
Length = 276
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 151/275 (54%), Positives = 205/275 (74%)
Query: 211 YLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEI 270
YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+ NL + + +
Sbjct: 1 YLLDPKIAELVSKELARKAVVVFDEAHNIDNVCIDSMSVNITRRTLDRCQGNLETLQKTV 60
Query: 271 ERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFL 330
R K TD RLR EY RLVEGL DA L+NP LP ++L+EAVPG+IR AEHFL
Sbjct: 61 LRIKETDEQRLREEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFL 120
Query: 331 HVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITD 390
LRRL++Y++ RL ++V +E P +F++ + I +K LRFC ERL SL+ TLEI D
Sbjct: 121 GFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEIAD 180
Query: 391 TDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR 450
+F + + +FATLV TY +GF+IIIEPFD+R P I +P+L SC DASLA+KPVF+R
Sbjct: 181 LADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFER 240
Query: 451 FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSL 485
FQSV+ITSGTLSP+D+YP++L+FHPV +F M+L
Sbjct: 241 FQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTL 275
>gi|429965815|gb|ELA47812.1| DNA repair helicase (rad3) [Vavraia culicis 'floridensis']
Length = 799
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 212/731 (29%), Positives = 353/731 (48%), Gaps = 140/731 (19%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M+FK++ + +YFPY I PEQ SY+ E + + +EMP G+GKTI +LS SY
Sbjct: 1 MMFKIDSIPIYFPYPTISPEQLSYIKETIASFTTTSNLFIEMPAGSGKTICILSAAVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY-----QTRHLG---PAAKILAIGLSSR 112
L ++ ++ +YCTRTV E EKTL EL++L +Y + R+LG + K L +
Sbjct: 61 LYHMQDDIRFVYCTRTVQESEKTLFELQMLISYVKQHVKVRYLGLGLTSRKHLCVNEEVH 120
Query: 113 KNLCVNSRVLAA--------------ENRDSVD-------------------------AA 133
N+ + R L + EN D D +
Sbjct: 121 GNIEMGCRKLLSVGNCGYYDRIDHILENVDRGDDYAVHTSVEVNGEESIGELSDIMELSV 180
Query: 134 CRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP---PGVYTLQDLRAFGKQQGWC 190
+ A +P E +A+V P G+YT + ++ G+ +C
Sbjct: 181 YDDKIGDNSTKAAGSDPKTEHVNTGSENSSTNNASV-PFSFDGIYTFEQIKQKGQHFKFC 239
Query: 191 PYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVS 250
PYFL R + +N ++ +Y Y+LDPK+ I+ M ++++FDEAHNIDN C+EA S
Sbjct: 240 PYFLTRKALSSSNFLILTYNYVLDPKIKEKINLPMN--AILIFDEAHNIDNACLEAFSYE 297
Query: 251 VRRQTLEGATRNLSRINQEIE-----RFKATDAGRLRAEYNRLVEGLALRGNLPIADAWL 305
+ R + G ++ L + I+ A + + A+ +E L
Sbjct: 298 ISRSVVNGCSKGLEVMEDMIKTGSGNTVNACASHKEHADRTHDIESL------------- 344
Query: 306 SNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHA 365
S ++ PGN+R+ H L +L+R++++LR +L++ ++ P +F+ S+
Sbjct: 345 ------STFSQKKWPGNLRKDVHVLSILKRILEFLRIKLKSTHLTINTPQNFLCSLENLT 398
Query: 366 GIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY--TRGFSIIIEPFDE 423
I ++TL +R M+ L + + L++ + D + Y + FS++ EPF
Sbjct: 399 FISRRTLSCLKKRFQ--MIKLPFDENVDKLNV--LVDMMDTLSRYAGSNAFSVVFEPFLS 454
Query: 424 RMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKM 483
+ P L LSC+D+ +A+ + +F+S++ITSGTL+P D+Y RLL + +S +
Sbjct: 455 N--NSLSPKLTLSCNDSRIAMSAL--KFKSIMITSGTLTPFDVYMRLLG---ITGKSVSI 507
Query: 484 SLTRDCICPMVLTRGSDQLPV--------------------------------------- 504
+ + +++++G+DQ+ V
Sbjct: 508 RGSTKEV--LIVSKGNDQINVSSDVSLESSKTVQIKQSNDTVPNTDAHGSTRNAGLANDF 565
Query: 505 -----STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILK 559
S+ + +R+ RNY L+ ++ +VPDG++ FF SY +M EII+ ++K
Sbjct: 566 EHALLSSSYKLRASSSTIRNYATLIKDLCDVVPDGMIIFFPSYVFMHEIISKC--EFMIK 623
Query: 560 EIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVI 619
++ HKL+FIET + E+ AL NY++A GRGA+ F VARGKV+EGIDF GR V+
Sbjct: 624 KL--HKLIFIETINYGESINALANYKRAIKQGRGAIMFCVARGKVSEGIDFKNEEGRCVL 681
Query: 620 MFGVPFQYTLS 630
+ GVPF +T S
Sbjct: 682 LIGVPFAFTES 692
>gi|67469709|ref|XP_650832.1| DNA repair helicase [Entamoeba histolytica HM-1:IMSS]
gi|56467489|gb|EAL45446.1| DNA repair helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 770
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 204/680 (30%), Positives = 339/680 (49%), Gaps = 111/680 (16%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKG-----HCLLEMPTGTGKTIALLSL 55
+IF + + ++FPY IYPEQY ++ + + ++EM TGTGKT+++++
Sbjct: 12 IIFTVNGIEIHFPYQFIYPEQYQFIKTVTSGVTNNKKPPHKQIIIEMGTGTGKTVSIITA 71
Query: 56 ITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNL 115
+ ++ N IYCTRT+ E+++ EL L I ++ L+SR +L
Sbjct: 72 AKGLLDNQGSNISHTIYCTRTIDEIKQIFNELTKL------------SIPSVVLASRAHL 119
Query: 116 CVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVY 175
C+ V R + + E + C ++ + E P V
Sbjct: 120 CLLDDV---------------RESKHSQLKCQEKRDKGLCPYYHDIEDEI------PIVA 158
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQK--ESVVVF 233
+ +L FGKQ CPYF +R+ + +V +Y Y+LDPKV + +M ++++VF
Sbjct: 159 GIDELVQFGKQHQRCPYFCSRNNFYKSPFIVCTYNYILDPKVENVTVGKMSDLHQTLLVF 218
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQ--EIERFKATDAGRLRAEYNRLVEG 291
DEAHN+DNV ++A ++++ TLE AT +L R+ + IE K L+ EY RLVEG
Sbjct: 219 DEAHNVDNVVVDAQTLTLSLDTLELATISLVRLTKLLSIEESKKP----LKNEYKRLVEG 274
Query: 292 LALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEK 351
L R + P N +P + + F+ ++ +V + R +L ++ K
Sbjct: 275 L--RHSEPTKRIEEEN----------NIPIDTTTSIQFVVLMNDIVNFFREKLREAHIHK 322
Query: 352 EGPVSFVASITAHAGIDQKTLRFCYE-------------RLHSLMLTL-------EITDT 391
+ ++ SI +D FC RLH L+ L +
Sbjct: 323 KQHINEHCSIPIKNIVDS----FCNSLALTPEIVSLIPLRLHLLIKALGDEYGGRQDVKG 378
Query: 392 DEFLH--IQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFD 449
D F + + + DFA L+ + GFS + + + VL L C DA+ A++P+ +
Sbjct: 379 DSFYYDDLYLVADFAALLCSCQEGFSYVPDVVKMDKDNCFHSVLNLICVDAAHAIQPILN 438
Query: 450 RFQSVVITSGTLSPIDLYPRLLNFHPVV-----SRSFKMSLTRDCICPMVLTRGSDQLPV 504
+F S++ TSGTLSP+ Y +L + VV + SF S+ R ICP+ +T+G D + +
Sbjct: 439 KFHSIIFTSGTLSPLKTYINILGLNNVVEEKQITSSFS-SMRR--ICPLFVTKGFDSISI 495
Query: 505 -------------------STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYM 545
S+++ R++ + +YG+L++E+ VPDGI+CFF SYSYM
Sbjct: 496 TSQSSDTPGTEIKQDRILFSSQYAYRTNRLIIHSYGRLILELSKTVPDGILCFFPSYSYM 555
Query: 546 DEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVA 605
+ I+ W++ I++ I +KL+F+E+ D ET+LA NYR AC G+GA+ F V RG+++
Sbjct: 556 NICISYWDEMKIIESIYSNKLIFVESNDSEETSLAFQNYRLACHTGKGAILFCVTRGRLS 615
Query: 606 EGIDFDRHYGRLVIMFGVPF 625
EGI+F H R V++ G P+
Sbjct: 616 EGINFTNHLARAVLIIGAPY 635
>gi|449701609|gb|EMD42397.1| DNA repair helicase rad3/xpD, putative [Entamoeba histolytica KU27]
Length = 770
Score = 301 bits (772), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 204/680 (30%), Positives = 339/680 (49%), Gaps = 111/680 (16%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKG-----HCLLEMPTGTGKTIALLSL 55
+IF + + ++FPY IYPEQY ++ + + ++EM TGTGKT+++++
Sbjct: 12 IIFTVNGIEIHFPYQFIYPEQYQFIKTVTSGVTNNKKPPHKQIIIEMGTGTGKTVSIITA 71
Query: 56 ITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNL 115
+ ++ N IYCTRT+ E+++ EL L I ++ L+SR +L
Sbjct: 72 AKGLLDNQGSNISHTIYCTRTIDEIKQIFNELTKL------------SIPSVVLASRAHL 119
Query: 116 CVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVY 175
C+ V R + + E + C ++ + E P V
Sbjct: 120 CLLDDV---------------RESKHSQLKCQEKRDKGLCPYYHDIEDEI------PIVA 158
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQK--ESVVVF 233
+ +L FGKQ CPYF +R+ + +V +Y Y+LDPKV + +M ++++VF
Sbjct: 159 GIDELVQFGKQHQRCPYFCSRNNFYKSPFIVCTYNYILDPKVENVTVGKMSDLHQTLLVF 218
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQ--EIERFKATDAGRLRAEYNRLVEG 291
DEAHN+DNV ++A ++++ TLE AT +L R+ + IE K L+ EY RLVEG
Sbjct: 219 DEAHNVDNVVVDAQTLTLSLDTLELATISLVRLTKLLSIEESKKP----LKNEYKRLVEG 274
Query: 292 LALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEK 351
L R + P N +P + + F+ ++ +V + R +L ++ K
Sbjct: 275 L--RHSEPTKRIEEEN----------NIPIDTTTSIQFVVLMNDIVNFFREKLREAHIHK 322
Query: 352 EGPVSFVASITAHAGIDQKTLRFCYE-------------RLHSLMLTL-------EITDT 391
+ ++ SI +D FC RLH L+ L +
Sbjct: 323 KQHINEHCSIPIKNIVDS----FCNSLALTPEIVSLIPLRLHLLIKALGDEYGGRQDVKG 378
Query: 392 DEFLH--IQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFD 449
D F + + + DFA L+ + GFS + + + VL L C DA+ A++P+ +
Sbjct: 379 DSFYYDDLYLVADFAALLCSCQEGFSYVPDVVKMDKDNCFHSVLNLICVDAAHAIQPILN 438
Query: 450 RFQSVVITSGTLSPIDLYPRLLNFHPVV-----SRSFKMSLTRDCICPMVLTRGSDQLPV 504
+F S++ TSGTLSP+ Y +L + VV + SF S+ R ICP+ +T+G D + +
Sbjct: 439 KFHSIIFTSGTLSPLKTYINILGLNNVVEEKQITSSFS-SMRR--ICPLFVTKGFDSISI 495
Query: 505 -------------------STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYM 545
S+++ R++ + +YG+L++E+ VPDGI+CFF SYSYM
Sbjct: 496 TSQSSDTPGTEIKQDRILFSSQYAYRTNRLIIHSYGRLILELSKTVPDGILCFFPSYSYM 555
Query: 546 DEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVA 605
+ I+ W++ I++ I +KL+F+E+ D ET+LA NYR AC G+GA+ F V RG+++
Sbjct: 556 NICISYWDEMKIIESIYFNKLIFVESNDSEETSLAFQNYRLACHTGKGAILFCVTRGRLS 615
Query: 606 EGIDFDRHYGRLVIMFGVPF 625
EGI+F H R V++ G P+
Sbjct: 616 EGINFTNHLARAVLIIGAPY 635
>gi|390367539|ref|XP_784080.2| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like, partial [Strongylocentrotus purpuratus]
Length = 272
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 132/272 (48%), Positives = 189/272 (69%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + V+FPYD IYPEQ+ YM+ELK+ LDAKGH +LEMP+GTGKT++LL+LI +Y+
Sbjct: 1 MKVNVDGLLVHFPYDYIYPEQFMYMMELKKLLDAKGHGVLEMPSGTGKTVSLLALIVAYI 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L +Y G + + LSSRKNLC++
Sbjct: 61 QANPHELTKLIYCSRTVPEIEKAVEELRRLLDYIEEQTGEKPNFVGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD+ C TAS++R +P + C+F+E ++ A + + PG Y+L DL
Sbjct: 121 VSKERIGKVVDSKCHSLTASYIRERRKHDPAVPICDFYEEFDAAGRDSPIEPGAYSLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ G+Q GWCPYFLAR+ + AN++VYSY YLLDPK+A +SKE+ K+S V+FDEAHNID
Sbjct: 181 KEIGRQNGWCPYFLARYTITHANIIVYSYHYLLDPKIAEQVSKELSKQSAVIFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIER 272
NVCIE++SV++ R+TL+ + +NL + + I R
Sbjct: 241 NVCIESMSVNISRKTLDKSNQNLDSLTRHINR 272
>gi|198461164|ref|XP_002138964.1| GA25101 [Drosophila pseudoobscura pseudoobscura]
gi|198137257|gb|EDY69522.1| GA25101 [Drosophila pseudoobscura pseudoobscura]
Length = 418
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 124/213 (58%), Positives = 171/213 (80%)
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EPFD++ P + +P+L SC D+S+A+ PVF RFQ+VVITSGTLSP+D+YP++L+F PVV
Sbjct: 68 EPFDDKTPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVM 127
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCF 538
SF M+L R C+ PM++++G+DQ+ +S+KF+ R D V RNYG+LLVE+ VPDG+VCF
Sbjct: 128 SSFTMTLARPCLLPMIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGVVCF 187
Query: 539 FVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS 598
F SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KACDCGRGAV +
Sbjct: 188 FTSYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLA 247
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
VARGKV+EG+DFD HYGR V+MFG+P+ YT S+
Sbjct: 248 VARGKVSEGVDFDHHYGRAVLMFGIPYVYTQSR 280
>gi|312097463|ref|XP_003148983.1| TFIIH basal transcription factor complex helicase subunit [Loa loa]
Length = 374
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 134/258 (51%), Positives = 185/258 (71%), Gaps = 15/258 (5%)
Query: 374 FCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVL 433
FC ER SL TLE+ D +F + I +FATLV TY RGF+I+IEP DE+ L
Sbjct: 1 FCAERFASLTRTLELADISDFSSLVLITNFATLVSTYARGFTIVIEPLDEKSGIGHSCTL 60
Query: 434 QLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM 493
LSC DAS+A++P+F R+++VVITSGTLSP+D+YP++L+F P V S M+L R CI P+
Sbjct: 61 HLSCMDASVAIRPIFQRYRTVVITSGTLSPLDMYPKILDFDPAVMASLSMTLARPCIAPL 120
Query: 494 VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN 553
++++G+DQ+ ++++F+ R D V RNYG L++E+VS+VPDG+V F
Sbjct: 121 IVSKGNDQVAMTSRFESREDAAVIRNYGSLVLELVSLVPDGVVVFL-------------- 166
Query: 554 DSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRH 613
GI+ E++++KL+FIET D +ET++AL+ Y +ACDCGRGAVFFSVARGKV+EGIDF H
Sbjct: 167 -PGIIDELLKYKLLFIETTDALETSIALEKYVEACDCGRGAVFFSVARGKVSEGIDFSHH 225
Query: 614 YGRLVIMFGVPFQYTLSK 631
GR VIM GVP+ YT S+
Sbjct: 226 LGRAVIMLGVPYVYTESR 243
>gi|402465654|gb|EJW01367.1| DNA repair helicase (rad3) [Edhazardia aedis USNM 41457]
Length = 942
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 149/345 (43%), Positives = 212/345 (61%), Gaps = 32/345 (9%)
Query: 317 EAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCY 376
E PGNIR + HFL L+RL +Y + +L+T ++ E SF SI ID+KTL F
Sbjct: 500 EFAPGNIRNSIHFLSTLKRLTEYFKTKLKTTHLTTETTSSFCKSIKDLTLIDKKTLSFLS 559
Query: 377 ERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLS 436
RL L+ TL + E I+ +CDF ++ Y GFSII EPFD + P+L+L
Sbjct: 560 TRLSLLIRTLNLNGKIELSAIKKLCDFGSIAAQYQNGFSIIFEPFDSMAQTVFSPILRLY 619
Query: 437 CHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLT 496
C DAS+A+K VF ++SV+ITSGTLSP+D Y ++L+F PV + + L R+CI P+++T
Sbjct: 620 CMDASIALKSVFS-YRSVIITSGTLSPMDFYCKILDFIPVKHKEIGIRLKRNCIGPLIVT 678
Query: 497 RGSDQL-------------------------------PVSTKFDMRSDPGVARNYGKLLV 525
+G+DQ+ VS+ + +R+DP V RNYG L++
Sbjct: 679 KGNDQMMIKIGEESQLKNNMPSSISEKPKDNVQGKENVVSSSYSLRNDPSVIRNYGLLII 738
Query: 526 EMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYR 585
E I PDG+V FF SY +M+EI++ W++ I+ EI ++KL+FIET D+ ET AL ++
Sbjct: 739 EFSKITPDGLVVFFPSYIFMEEIVSCWSELNIITEIKKNKLIFIETPDIKETEKALKLFK 798
Query: 586 KACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
AC+ GRG V FSVARGKV+EG+DF +GR VI+ GVP+Q+T S
Sbjct: 799 IACENGRGGVLFSVARGKVSEGVDFKNEHGRCVIVLGVPYQFTES 843
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 113/403 (28%), Positives = 177/403 (43%), Gaps = 129/403 (32%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
+ ++TVYFP+ +YPEQ+ Y+ E+ L +GHCLLEMP+GTGKTI+LLS I SY+L
Sbjct: 5 INEITVYFPFPTMYPEQHEYISEVLSLLKTQGHCLLEMPSGTGKTISLLSSIISYILHLK 64
Query: 65 ENPVKL------------------------------------IYC------TRTVHEMEK 82
EN + IYC TR + ++
Sbjct: 65 ENFRTVQTECNTDITSSALNKRAKISKNKTDLSAVQNCYETEIYCEKNDFVTRNISNLDS 124
Query: 83 T---------------------LAELKLLHNY-QTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ L ELK L NY + + + L +GL+SR LCVN
Sbjct: 125 SFSRAIPKIMYGSRTVGEIEKALEELKFLINYIENEYKIDMSDFLGVGLTSRNVLCVNEN 184
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGV------ 174
A + S++ AC + T AE+P + C++F+N E S +
Sbjct: 185 --ARKMPFSIEHACNRLT-------NAEDPK-QGCKYFQNLEDLGSNFTSLNSIKLKKNC 234
Query: 175 -----------YTLQD--------------LRAFGKQQGWCPY----------------- 192
Y++ D +F + +C Y
Sbjct: 235 NEINCADKCQNYSVDDGEGKNIMGNSMSNEQTSFDLKANFCGYKPLNGVYTLADLVTLGK 294
Query: 193 -------FLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIE 245
FLAR ++ +++++++Y YL+DP++ I+ KE+ S+V+FDEAHNIDN CIE
Sbjct: 295 TKNICPYFLARKILASSDIIIFTYNYLIDPRIKSIVLKEIGLNSIVIFDEAHNIDNACIE 354
Query: 246 ALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRL 288
A+SV ++R LE A + + + EI++ +A LR E ++
Sbjct: 355 AMSVDIKRSDLENANKEIKALELEIQKARAESIEILREEAEKI 397
>gi|71400429|ref|XP_803049.1| TFIIH basal transcription factor complex helicase subunit
[Trypanosoma cruzi strain CL Brener]
gi|70865619|gb|EAN81603.1| TFIIH basal transcription factor complex helicase subunit, putative
[Trypanosoma cruzi]
Length = 452
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 196/284 (69%), Gaps = 16/284 (5%)
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICD-FATLVGTYTR---- 412
++ + +D + R+ ERL LM TL+IT++ +F ++ I + TL YT
Sbjct: 1 LSKVRDECAVDIRHFRYLTERLKVLMNTLQITNSHKFRNVSLIAQMYMTLSTHYTDDRYE 60
Query: 413 --GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRL 470
GF ++ E D P +PDPV++L C DASLA++ F +++SVV+TSGTLSP+D+YP++
Sbjct: 61 KPGFVVVCEAHDPTRPAVPDPVIRLVCVDASLALREAFSKYRSVVLTSGTLSPLDIYPKI 120
Query: 471 LNFHPVVSRSFKMSLTRDCICPMVLTRGSDQL-----PVSTKFDMRSDPG----VARNYG 521
L F PV+++SF+M+L+R CI P+V+TR ++ + +++ F +R++P V+ Y
Sbjct: 121 LGFTPVIAKSFQMTLSRKCIAPVVVTRSTESVNITMEEITSSFVVRTNPLAQDIVSSAYE 180
Query: 522 KLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLAL 581
LL + VPDGIVCFF Y YM E++ W+ SG LKE+ Q+KL+FIETQ V ET++AL
Sbjct: 181 DLLRGLGKTVPDGIVCFFTGYQYMGEVLLGWHRSGFLKELAQYKLIFIETQSVEETSIAL 240
Query: 582 DNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
NYR+ACD GRGA+F ++ARGK+AEGIDFDRHYGR V+MFGVPF
Sbjct: 241 ANYRRACDIGRGAIFMAIARGKIAEGIDFDRHYGRAVVMFGVPF 284
>gi|78190825|gb|ABB29734.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH [Monosiga brevicollis]
Length = 207
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 124/207 (59%), Positives = 163/207 (78%)
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP+D+R P +PDPVL+ +C DASLAVKPVFDRFQSV+ITSGTLSP+D+YP++LNF PV
Sbjct: 1 IEPYDDRAPSVPDPVLRFTCMDASLAVKPVFDRFQSVIITSGTLSPLDMYPKILNFRPVT 60
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
SF M+L+R + P+V+TR +DQ P+ST+++ R V R YG LL+++ S VPDG+VC
Sbjct: 61 MCSFDMTLSRTSLLPIVVTRSADQTPLSTRYEDREQSAVKRGYGHLLLDICSAVPDGVVC 120
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FFVSY Y++ ++TW D GI+ +I KLVF+ETQD ET+ ALD+++KAC GRGAV
Sbjct: 121 FFVSYEYLESAVSTWIDQGIMTQIQAKKLVFVETQDGAETSQALDSFQKACANGRGAVLL 180
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVP 624
SVARGKV+EG+DFD H GR V+M G+P
Sbjct: 181 SVARGKVSEGLDFDHHLGRAVVMMGIP 207
>gi|149239755|ref|XP_001525753.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449876|gb|EDK44132.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 325
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 201/326 (61%), Gaps = 12/326 (3%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+C+LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYAYMSDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L ++ LG +GL+SRKNLC+N
Sbjct: 61 MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEFRASALGYVEDFRGLGLTSRKNLCLNPL 119
Query: 121 VLAAENRDSVDAACRKRTASWV-----RALAAEN------PNIETCEFFENYEKAASAAV 169
+ + VD CR+ T + R + E+ C F EN + +
Sbjct: 120 ISRERKGNVVDEMCRRVTNGQLKEKIERGVVTEDMQERDPEKYSLCSFHENLNELDQHDL 179
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
+P GVY+ L + KQ G CPYF R M+ F N+++YSY YLLDPK+A +S+E+ K+S
Sbjct: 180 IPEGVYSFDALIKYCKQIGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIADRVSRELSKDS 239
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
+++FDEAHNIDNVCIEALS+ + L+ ATR +++ ++ K D+ +L+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIEALSLDLTEDALKRATRGANKLADAVDEMKQQDSEKLQNEYEQLV 299
Query: 290 EGLALRGNLPIADAWLSNPALPSDIL 315
EGL + ++SNP LP D+L
Sbjct: 300 EGLRQAEVAREEELFMSNPILPQDLL 325
>gi|269860969|ref|XP_002650201.1| DNA repair helicase [Enterocytozoon bieneusi H348]
gi|220066375|gb|EED43859.1| DNA repair helicase [Enterocytozoon bieneusi H348]
Length = 728
Score = 276 bits (705), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 175/662 (26%), Positives = 325/662 (49%), Gaps = 82/662 (12%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MIF++ + +YFPY +I+P + Y+ + K H ++E+P+ +T+ALLS SY
Sbjct: 1 MIFEINSIPIYFPYASIHPSEIEYITTMLMQFQKKDHFIIEIPSEIYRTLALLSSAVSYS 60
Query: 61 LSKPEN--PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVN 118
+ N P K+IYC R + ++ LK+L Y + K + I L +N
Sbjct: 61 IYCKNNGRPYKIIYCVRDDSDTSSIISNLKVLIAYINN--ITSTKFIGIELP------IN 112
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFF--ENYEKAASAAVLPPGVYT 176
+ D D EN NI+ F +N+ GVYT
Sbjct: 113 NIF------DMWDVY--------------ENINIDVSNKFILDNF----------VGVYT 142
Query: 177 LQDLRAFGKQQG--WCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
++ F ++ W F + + + VV++Y YLLDP + I+ +Q + V+F+
Sbjct: 143 FNEMLEFSQKNNIHWLTMF--QTTLHHCDFVVFAYNYLLDPGLYSIVYHSLQSTANVIFE 200
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLAL 294
+ID+ C + +++ + R LE A ++L + ++R ++ + L + V G+
Sbjct: 201 NGWDIDHQCTKIINLKITRPLLESAYQSLEWLEMTLDRNESMLSDILLKS--QKVNGIG- 257
Query: 295 RGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGP 354
+ +P L++P E +PGN+R + H + + +RL+++L+ +L+ +
Sbjct: 258 KNEIPYYANNLNSP-----FYYEYIPGNMRSSIHTVKLFKRLIEFLKIKLKVQQPYTMSL 312
Query: 355 VSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGF 414
F+ + ID +L+FC +RL ++ L + TD +++ + FATL+ Y+ GF
Sbjct: 313 KEFINEMADLVFIDAHSLKFCSQRLGIVLRDLHVAQTD-MCNLKIVSRFATLIAIYSDGF 371
Query: 415 SIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFH 474
+ + E P++QL C D S ++P+F +F +V+IT G L D+Y ++L
Sbjct: 372 QMAFNHYTEYDTQYT-PIIQLFCIDPSKVLQPIFSKFHTVMITVGALVFSDIYLKILGIK 430
Query: 475 PVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS---------------------- 512
+ K ++ I +++T+G DQ+ + K ++
Sbjct: 431 INHAYILKSDDKKNNIASLIITKGDDQILLENKIIYKACESNNMLNTQCKTSLSTIITDS 490
Query: 513 ----DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
D + RNYG L++ + +VPD I+ F SY ++++II W+++G ++ ++++KL+F
Sbjct: 491 TINIDSSIIRNYGNLILNLSKVVPDNIIVIFPSYFHINKIINEWDETGFIRNLLENKLIF 550
Query: 569 IETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
+ET + E T+ + N++ ACD GRGA+ FS K E +DF Y R +++ GVP+ +T
Sbjct: 551 VETTNYKEKTVIMQNFKIACDNGRGAILFSTFENKNLEELDFLHGYNRSLVVIGVPYIWT 610
Query: 629 LS 630
++
Sbjct: 611 IN 612
>gi|90075836|dbj|BAE87598.1| unnamed protein product [Macaca fascicularis]
Length = 323
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 119/193 (61%), Positives = 158/193 (81%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRG 498
DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+L R C+CPM++ RG
Sbjct: 2 DASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRG 61
Query: 499 SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGIL 558
+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY YM+ +A+W + GIL
Sbjct: 62 NDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGIL 121
Query: 559 KEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLV 618
+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV+EGIDF HYGR V
Sbjct: 122 ENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAV 181
Query: 619 IMFGVPFQYTLSK 631
IMFGVP+ YT S+
Sbjct: 182 IMFGVPYVYTQSR 194
>gi|70921532|ref|XP_734078.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56506478|emb|CAH82946.1| hypothetical protein PC300239.00.0 [Plasmodium chabaudi chabaudi]
Length = 209
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 167/203 (82%)
Query: 428 IPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTR 487
I DPV+Q +C D+S+A+K V +R++SVV+TSGT++P++LYP+LLNF V++ SF MS R
Sbjct: 7 IYDPVIQFACLDSSIAMKSVLNRYKSVVLTSGTITPLELYPKLLNFSTVLTASFPMSFDR 66
Query: 488 DCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDE 547
+C+CP+++T+ SD +P+S+++ +R+D V +NYG LLVEM +PDGI+ +F SY YM+
Sbjct: 67 NCVCPLIVTKSSDLIPLSSQYSLRNDLNVIKNYGFLLVEMCKNIPDGIISYFPSYIYMEH 126
Query: 548 IIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEG 607
+++TW + GI+ I+++KL+FIET+D+V TT+AL N++KACD +GAVF S+ RGK+AEG
Sbjct: 127 VMSTWYELGIISNILEYKLIFIETKDIVSTTIALHNFKKACDLXKGAVFLSICRGKIAEG 186
Query: 608 IDFDRHYGRLVIMFGVPFQYTLS 630
IDFD+HYG+ VI+FG+P+QYTLS
Sbjct: 187 IDFDKHYGKCVIVFGIPYQYTLS 209
>gi|123399986|ref|XP_001301577.1| helicase [Trichomonas vaginalis G3]
gi|121882775|gb|EAX88647.1| helicase, putative [Trichomonas vaginalis G3]
Length = 546
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 135/356 (37%), Positives = 205/356 (57%), Gaps = 36/356 (10%)
Query: 305 LSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL-------------------E 345
S+ +P ILK+A+P +IR + F+ R+L+++L + E
Sbjct: 60 FSHRNIPEHILKKALPSSIRDFDDFIDKSRKLIRFLTSFIQGSERPTITTKAADALMHGE 119
Query: 346 TENV-----------EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEF 394
T V E+ P S + I + G+D TL E+L + ++ ++ D +++
Sbjct: 120 TNAVDAPLQTAEGETERYSPNSVLGLIYSKTGLDASTLIKMPEQLSNFIVGNKLPDYEKY 179
Query: 395 LHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSV 454
+ + +FA+L+G + +GF++ +E + PV+Q++C D + KPV FQ V
Sbjct: 180 AALVDVLEFASLIGEFDQGFTVFVENM------MQGPVMQMACLDPTFTFKPVVTHFQRV 233
Query: 455 VITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDP 514
VITSGTLSP+ YP++L F PV S F MS +R C+ P++ ++G P+++ + RS+P
Sbjct: 234 VITSGTLSPLSFYPKMLEFEPVTSAGFTMSFSRQCLLPIIASKGYMNAPLTSSYKQRSNP 293
Query: 515 GVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV 574
VA YG LL+EM VPDGIV +F SY YM ++ W S I+ +IM++KLVFIET +
Sbjct: 294 NVAIGYGLLLLEMCKTVPDGIVAYFPSYIYMHMLLKEWMSSEIMSDIMKYKLVFIETPNA 353
Query: 575 VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
ET L N+R +CD GRGAV VARG+V+EGIDF HYGR I+FG+P + T S
Sbjct: 354 EETDNTLANFRNSCDNGRGAVLLGVARGRVSEGIDFSDHYGRCCILFGLPVRNTTS 409
>gi|123451564|ref|XP_001313959.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121895940|gb|EAY01107.1| hypothetical protein TVAG_442190 [Trichomonas vaginalis G3]
Length = 752
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 179/648 (27%), Positives = 302/648 (46%), Gaps = 45/648 (6%)
Query: 4 KLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK 63
++ D+ V FPY IY EQ S M ++K +LDA+G + E P G GK IA+ S+ Y LSK
Sbjct: 12 QIVDLQVIFPYRMIYSEQKSLMEQIKLSLDARGPFVFETPPGIGKLIAVFSIYLEY-LSK 70
Query: 64 PENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK-ILAIGLSSRKNLCVNSRVL 122
+ ++Y T T + +++ + P K I AI L S+ C+N V
Sbjct: 71 HPDIGPIVYSTDTYQSYLRAFEAFQIVVKAREADPDPFNKSITAISLGSKHFQCINKTV- 129
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
+ D ++ C T SW R C++F N + ++
Sbjct: 130 --KESDDIEDLCFNNTCSWSRT---------HCDYFGNVPDQYQR------INSIDSFNE 172
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
F K+ CPY+ +R ++ V+ S LL+PK I + + + +FD +H +D V
Sbjct: 173 FCKECNACPYYASRAILHNFKVIFISNSELLNPKSPSRILQRLPDTASFIFDNSHYLDKV 232
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRG------ 296
C + LS + LE A R L + + +E K + + + +Y + +G+ ++
Sbjct: 233 CCDNLSSYLTLPLLEQAKRELDNLKKRVESTK--NDQKSQDQYENVAKGIKIQDILDLGP 290
Query: 297 --NLPIADAWLSN-----PALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
+P D ++ + P +PS + G + +HFL + L+++L L ++
Sbjct: 291 KVKIPEQDGYVYSTKFMIPIVPSHQTNRNICGTLWNMDHFLFRVDYLLKFLVNLLPCDSE 350
Query: 350 E---KEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATL 406
+ K + + + L F RL + + I EF + + +F +L
Sbjct: 351 QTFTKYSSTELLTLMYQEIFTEPLALYFMGPRLSYYIASEGIDQVQEFAPLYAVFNFCSL 410
Query: 407 VGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDL 466
+ TY SI+ + + H+P LQLSCHDASLA + D+FQ+ ITS L
Sbjct: 411 LATYNESLSIVADFKNPIEAHVPIASLQLSCHDASLAFSMITDKFQNFFITSSALLVPGF 470
Query: 467 YPRLLNFHPVVSRSFKMSLTRD-----CICPMVLTRGSDQLP-VSTKFDMRSDPGVARNY 520
+P LL F P+ S RD + M ++ G+DQ V + D+ ++ G+ RN
Sbjct: 471 FPVLLGFKPLSQIGMVYS-PRDEKGNYNLNIMTISHGNDQQSLVCSPNDVTTNIGIVRNI 529
Query: 521 GKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA 580
LL+E PDG+V FF S+ ++ I+ W ++ +++ +KL+FIE D ++ +L
Sbjct: 530 MALLIESSKATPDGMVVFFPSFKVLNTIVTKWRNTNQQVDLLNNKLIFIEQPDPMKASLL 589
Query: 581 LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
LD++ ++ D RG + VA G VA+ +D H+ R I +G P T
Sbjct: 590 LDSFYRSLDNMRGGILMCVAGGIVADALDLSNHHCRTAIAYGFPMMET 637
>gi|167377495|ref|XP_001734418.1| DNA repair helicase rad3/xp-D [Entamoeba dispar SAW760]
gi|165904069|gb|EDR29430.1| DNA repair helicase rad3/xp-D, putative [Entamoeba dispar SAW760]
Length = 680
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 175/575 (30%), Positives = 288/575 (50%), Gaps = 87/575 (15%)
Query: 106 AIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAA 165
++ L+SR +LC+ V R + + + E + C ++ + E
Sbjct: 3 SVVLASRAHLCLLDDV---------------RESKHSQLMCQEKRDKGLCPYYHDIEDEI 47
Query: 166 SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM 225
P + + +L FGKQ CPYF +R+ + +V +Y Y+LDPKV + +M
Sbjct: 48 ------PIIAGIDELVQFGKQYQRCPYFCSRNNFYKSPFIVCTYNYILDPKVENVTVGKM 101
Query: 226 QK--ESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGR--L 281
++++VFDEAHN+DNV ++A ++++ TLE AT +L+R++ + + +A + L
Sbjct: 102 SDLHQTLLVFDEAHNVDNVVVDAQTLTLSLDTLELATISLNRLS----KLLSIEASKRPL 157
Query: 282 RAEYNRLVEGLA----LRGNLPIADAWLSNPALPSDILKEA-VPGNIRRAEHFLHVLRRL 336
EY RLVEGL + SN I +E +P + + F+ +++ +
Sbjct: 158 ENEYKRLVEGLKHSELTKETEEERQKLFSNKKTTKRIEEENDIPIDTITSIQFVILMKGI 217
Query: 337 VQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTL--RFCYE-------------RLHS 381
V + R +L +E P+ I H I K++ FC RLH
Sbjct: 218 VNFFREKL------REAPIHKKQHINEHHSIPIKSVVDSFCDSLALTPEIVSLIPLRLHL 271
Query: 382 LMLTL-------EITDTDEFLH--IQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPV 432
L+ L + D F + + + DFA L+ + GFS + + + V
Sbjct: 272 LIKALGDEYGGRQDVKGDSFYYDDLYLVADFAALLCSCQEGFSYVPDVVKMDKDNCFHCV 331
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR---SFKMSLTRDC 489
L L C DA+ A++P ++F S+V TSGTLSP+ Y +L + VV + S TR
Sbjct: 332 LNLICVDAANAIQPTLNKFHSIVFTSGTLSPLKTYINILGLNNVVEEKQITSSFSNTRR- 390
Query: 490 ICPMVLTRGSDQLPV-------------------STKFDMRSDPGVARNYGKLLVEMVSI 530
ICP+ +T+G D + + S+++ RS+ + +YG+L+VE+
Sbjct: 391 ICPLFVTKGFDSISITSQTPDTSGTEVKQDRILFSSQYTYRSNRLIIHSYGRLIVELSKT 450
Query: 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDC 590
VPDGI+CFF SYSYM+ I+ W++ I++ I +KL+F+E+ D ET+LA NYR AC
Sbjct: 451 VPDGILCFFPSYSYMNICISYWDEMKIIESIYLNKLIFVESNDGEETSLAFQNYRLACHT 510
Query: 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
G+GA+ F V RG+++EGI+F H R V++ G P+
Sbjct: 511 GKGAILFCVTRGRLSEGINFTNHLARAVLIIGAPY 545
>gi|239793449|dbj|BAH72839.1| ACYPI008186 [Acyrthosiphon pisum]
Length = 325
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 152/196 (77%)
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP 492
+ SC DAS+A+KP+ D F +V+ITSGTLSP+D+YP++LN +PV+ S M+L+R C P
Sbjct: 1 MHFSCLDASIAIKPILDYFNTVLITSGTLSPLDMYPKILNINPVIMTSLTMTLSRQCFLP 60
Query: 493 MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW 552
MV+ RG+DQ+ +++K++ R D VARNYG LL+EMV +VPDG+VCFF SY YM ++A W
Sbjct: 61 MVVGRGNDQVALTSKWESREDSSVARNYGHLLLEMVKVVPDGVVCFFPSYLYMKSVVAAW 120
Query: 553 NDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDR 612
D G++++I+ +KL+FIETQ++V T A+ Y +A + G+GA+ SVARGKV+EG+DFD
Sbjct: 121 YDQGLIEKILDYKLIFIETQNIVVTNHAIKCYAEAIERGKGALLLSVARGKVSEGMDFDH 180
Query: 613 HYGRLVIMFGVPFQYT 628
HYGR VI+ G+P+ YT
Sbjct: 181 HYGRAVIVLGMPYVYT 196
>gi|336377405|gb|EGO18567.1| hypothetical protein SERLADRAFT_443905 [Serpula lacrymans var.
lacrymans S7.9]
Length = 239
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 166/237 (70%), Gaps = 1/237 (0%)
Query: 201 FANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGAT 260
F +VV+YS+ YLLDPKVA +SKE+ K+++VVFDEAHNIDNVCIE+LS+ + R L+ A
Sbjct: 3 FVDVVIYSFHYLLDPKVAEQVSKELSKDAIVVFDEAHNIDNVCIESLSIDLTRPMLDSAA 62
Query: 261 RNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI-ADAWLSNPALPSDILKEAV 319
R+++++ ++IE K TDA +L+ EY +LVEGL + D ++SNP LP D+L EA+
Sbjct: 63 RSVTKLGEKIEEIKTTDAAKLQDEYAKLVEGLEEPASEAADEDNFMSNPVLPDDLLNEAI 122
Query: 320 PGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERL 379
PGNIR+AEHF+ L+R V+YL+ R+ +V E P+SF+ + I+++ LRFC ERL
Sbjct: 123 PGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFLQHLKDITYIERRPLRFCAERL 182
Query: 380 HSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLS 436
S++ TLE+ DE+ +Q + FATLV TY +GF +I+EPF+ +P+P+ +
Sbjct: 183 QSMIRTLELNRLDEYSSLQKVASFATLVATYEKGFLLILEPFETDNATVPNPIFHFT 239
>gi|308163435|gb|EFO65772.1| TFIIH basal transcription factor complex helicase subunit [Giardia
lamblia P15]
Length = 841
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 194/746 (26%), Positives = 339/746 (45%), Gaps = 139/746 (18%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYM----------LELKRALDAKGHCLLEMPTGTGKTI 50
M+ + +++ +PY I +Q M +E +RAL LLE TG+GKT+
Sbjct: 1 MLVDIGGLSIVYPYPTISKQQLQIMEHVCDVLRTGIEGRRALS-----LLEAKTGSGKTL 55
Query: 51 ALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTR-------------- 96
A+LS S+ + P ++++ RT+ ++ L E+ L+ ++
Sbjct: 56 AVLSAAASFWDAYPTAISRIVFLCRTIPVVDHVLGEIFHLNKARSDASKSAPGATASSGI 115
Query: 97 -----------------HLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTA 139
+ P K+ A+ ++SR+ LCV+ V +D C K T
Sbjct: 116 TVNAEPSLKKETPNPNVKVPPLRKLRALPITSRRRLCVSESV---SRTAYIDTECIKIT- 171
Query: 140 SWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGW---CPYFLAR 196
R + E+ + C F+ K + YT+ + K CPYF R
Sbjct: 172 ---RGVDLEDTTM--CPAFKKILKEEGELSIDRESYTIPEFINQCKTYNGGVVCPYFANR 226
Query: 197 HMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVR---- 252
++ A+++V SY Y+LDPK AG + + K ++++ DEAHN++ +A+S+ +
Sbjct: 227 RLLHTADIIVGSYNYVLDPKCAGPLGAILDKNTLLIIDEAHNLEYAACDAMSMHLSYKLV 286
Query: 253 ---RQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPA 309
Q++ + +++ + + D LR E R ++ + L L + +
Sbjct: 287 VDCEQSIHAMSASIAHSTRPPPPPFSPDRSLLRKE--RAIKTVQQDSRL------LFSGS 338
Query: 310 LPSDIL--KEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG---PVSFVASITAH 364
P+D+L +R + FL L R+V+ L+ +L ++ + K+ P V ++
Sbjct: 339 APADVLLLSSESYAAVRTPQQFLSGLLRIVRLLKEQL-SDRLTKDVVSLPHMDVLNLVRL 397
Query: 365 AGIDQKTLRFCYERLHSLMLTLEITDTD-----EFLH-------IQTICDFATLVGT--Y 410
+ + L+ E LH I D + +FL ++T+ F T + Y
Sbjct: 398 QFVTESFLQLSPEYLHYYQSYYCIFDRNLPQLVQFLSLLGYFGSVETLKHFRTYSSSLSY 457
Query: 411 TRGFSIIIEPF------DERMPHIPD--------PVLQLSCHDASLAVKPVFDRFQSVVI 456
+ F++I +P D + H + +L C D +A++PV+ F +++
Sbjct: 458 EKFFTVIQKPQTSMGDDDTLLAHTQQIFEHSKHQTLYRLVCQDPFIALRPVYQYFPLIMM 517
Query: 457 TSGTL-------------------SPIDLYPRLLNF-----------HPVVSRSFKMSLT 486
S TL + L R+L PVV + S T
Sbjct: 518 MSATLFASYECTDTSINASGIAEATKPSLIERILGITMYAEQCERSVEPVVKKCIVESGT 577
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
+ IC ++ +G+DQ ++T+F R+ P +NYG++L ++ S DG++ FF SY +M+
Sbjct: 578 QSNICIKIIGKGADQAKLTTQFFFRTTPSAVQNYGRILAQISSSTADGLIVFFPSYRFME 637
Query: 547 EIIATWN--DSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKV 604
++I WN S + + I +KLVF ET D +ET A+ YRK CD GRGAV F++ARGK+
Sbjct: 638 DLITLWNITSSNMFRVITNNKLVFFETPDPIETMHAVACYRKCCDSGRGAVLFAIARGKL 697
Query: 605 AEGIDFDRHYGRLVIMFGVPFQYTLS 630
+EGIDF H+ R +I+ GVP+ Y+ S
Sbjct: 698 SEGIDFKYHHARSIILIGVPYLYSGS 723
>gi|76156575|gb|AAX27759.2| SJCHGC09163 protein [Schistosoma japonicum]
Length = 331
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 137/174 (78%)
Query: 458 SGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVA 517
SGTLSP+++YPR+L+FHPV + SF M+L+R+C+ PM++++G+DQ+P++TKF+ R D V
Sbjct: 1 SGTLSPLEMYPRILDFHPVNTVSFTMTLSRNCVLPMIVSKGNDQVPMTTKFESREDIAVI 60
Query: 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVET 577
RNYG LL ++ ++VPDGIV FF SY Y++ ATW + I+ +I ++KL+F+ETQD ET
Sbjct: 61 RNYGHLLTQLSAVVPDGIVAFFPSYHYLESTFATWYEQHIVDQIQRYKLLFVETQDAEET 120
Query: 578 TLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+LAL Y +AC+ GRGAV SV RG+V+EGIDFD H GR VIMFGVP+ YT S+
Sbjct: 121 SLALAAYHRACENGRGAVLLSVVRGRVSEGIDFDHHLGRCVIMFGVPYVYTQSR 174
>gi|68069513|ref|XP_676668.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56496467|emb|CAH97769.1| hypothetical protein PB000523.02.0 [Plasmodium berghei]
Length = 363
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 190/363 (52%), Gaps = 105/363 (28%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
++F L+++ ++FPYD IYPEQY+YM LK+ LD++GHC+LEMPTGTGKT+A+ SLITSY
Sbjct: 2 VVFYLDNLEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ 61
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ-------------------------- 94
K +N K I+CTRTV EMEK+L ELK + NY+
Sbjct: 62 YYKNDNS-KFIFCTRTVAEMEKSLIELKKVINYRINIIKKCNELSKKISKSNIKEDNDVI 120
Query: 95 --------------------TRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAAC 134
+ G ++ILAIG+S+R+ +CVN +VL R+ +D C
Sbjct: 121 KNENNDEKETNIINEEVDNISNGFGNNSEILAIGISARRCMCVNEKVLLKHEREKIDEEC 180
Query: 135 RKRTASWVRALAA-------ENPNIET--------------------------------- 154
RK TA+++R N NI+
Sbjct: 181 RKLTATFIREKKISKKLNNYSNSNIDKISDFIIKNKHHIDMEDYFSIYNSKNSISEYNDL 240
Query: 155 --CEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQG--------WCPYFLARHMVQFANV 204
C +FENY+K ++ PGVYT+++L+ K CPYF A+ +++ A V
Sbjct: 241 GLCGYFENYKKDFVYELIEPGVYTIEELKELCKNYKNRENINTPICPYFCAKKIIEIAKV 300
Query: 205 VVYSYQYLLDPKVAGII--SKEM------QKESVVVFDEAHNIDNVCIEALSVSVRRQTL 256
+V +YQY++DPKV+ I K++ +K ++VFDEAHNID+VC+EALSV++ R L
Sbjct: 301 IVLNYQYIIDPKVSKSIFLGKDINNRVNYKKNDIIVFDEAHNIDSVCLEALSVNIDRSIL 360
Query: 257 EGA 259
A
Sbjct: 361 NKA 363
>gi|353442067|gb|AER00319.1| xeroderma pigmentosum group D, partial [Hydra vulgaris]
Length = 173
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 98/173 (56%), Positives = 133/173 (76%)
Query: 422 DERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSF 481
D++ P IP+P++ C DAS+A+KPVF+RFQSVVITSGTLSP+D+YP+LL+F PV +F
Sbjct: 1 DDQTPTIPNPIIHFCCLDASVAIKPVFERFQSVVITSGTLSPVDMYPKLLDFQPVNMSTF 60
Query: 482 KMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVS 541
M+L R C+ P++ ++G+DQ+ +S+ F R D V RNYG LLVEM + VPDGI CFFVS
Sbjct: 61 TMTLARQCVLPIICSKGNDQVAISSSFQTRDDMAVIRNYGNLLVEMSASVPDGIACFFVS 120
Query: 542 YSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGA 594
Y YM+ +++ W+D GI+ I ++KL+FIETQD ET LAL NY+KAC+ GRG
Sbjct: 121 YLYMETVVSIWHDQGIISNIQKNKLLFIETQDGPETALALYNYQKACENGRGG 173
>gi|253744346|gb|EET00567.1| TFIIH basal transcription factor complex helicase subunit [Giardia
intestinalis ATCC 50581]
Length = 834
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 188/735 (25%), Positives = 334/735 (45%), Gaps = 121/735 (16%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYM----------LELKRALDAKGHCLLEMPTGTGKTI 50
M+ + + V +PY + +Q M +E KRAL LLE TG+GKT+
Sbjct: 1 MLVDVCGLPVVYPYPTVSKQQLQIMEHVHNVLRTGIEGKRALS-----LLEAKTGSGKTL 55
Query: 51 ALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHN------------YQTRHL 98
A+LS S+ + P ++++ RT+ ++ L E+ L+ Y +
Sbjct: 56 AVLSTAISFWDAYPTAISRIVFLCRTIPVVDHVLNEIFHLNKARGXLSKSTTGAYISNTT 115
Query: 99 GPAAK---------------ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR 143
P K + A+ ++SR+ LC+N V +D C + T
Sbjct: 116 EPPLKQEASNSSLKIPVLRKLRALPITSRRRLCINESV---SRTAYLDTECIRLTR---- 168
Query: 144 ALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQG---WCPYFLARHMVQ 200
A+ + C F+N K + + YT+ D K+ CPYF R ++
Sbjct: 169 --GADLEDTAVCPAFKNILKEENELSINRESYTIPDFIDHCKRYSNGEVCPYFANRRLLH 226
Query: 201 FANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGAT 260
A+++V SY Y+LDPK AG + + + ++++ DEAHN++ +A+S+ + + +
Sbjct: 227 TADIIVGSYNYILDPKCAGPLGAILDRNTLLIIDEAHNLEYAACDAMSMHLSYKLVVDCE 286
Query: 261 RNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDIL--KEA 318
+++ ++ I + + + + A++ + S A P+D+L
Sbjct: 287 KSIRMMSDLIAHSTLPPPPPFSPDRSLIRKERAIKTVQQDSRLLFSGSA-PADVLLLSST 345
Query: 319 VPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG---PVSFVASITAHAGIDQKTLRFC 375
I+ + FL L R+V+ L+ +L ++ + K+ P V ++ + + L+
Sbjct: 346 SYAAIKTPQQFLSGLLRIVRLLKEQL-SDRLTKDVVSLPHMDVLNLMRLQFVGESFLQLS 404
Query: 376 YERLHSLMLTLEITDTD-----EFLH-------IQTICDFATLVGT--YTRGFSIIIEPF 421
E LH I D + +FL ++T+ F T + Y + F++I +P
Sbjct: 405 PEYLHYYQSYYRIFDKNLPQLVQFLSLLGYFGSVETLKHFRTYSSSLSYEKFFTVIQKPQ 464
Query: 422 ------DERMPHIPD--------PVLQLSCHDASLAVKPVFDRFQSVVITSGTL------ 461
D + H + +L C D +A++PV+ F +++ S TL
Sbjct: 465 TSTGDDDTLLAHTQQIFEHNKHQTLYRLVCQDPFIALRPVYQYFPLIIMMSATLFASYEC 524
Query: 462 -----SPI--------DLYPRLLNF-----------HPVVSRSFKMSLTRDCICPMVLTR 497
SP + R+L PV+ + S + C ++ +
Sbjct: 525 ADTLVSPSGAVEVAKPSMIERILGITMYAEQCERSVEPVIKKCIVESGAQPNTCIKIIGK 584
Query: 498 GSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN--DS 555
G+DQ ++T+F R+ P +NYG++L ++ S DG++ FF SY +M+++I WN S
Sbjct: 585 GADQAKLTTQFFFRTTPSAVQNYGRILAQISSSTSDGLIVFFPSYRFMEDLITLWNITSS 644
Query: 556 GILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYG 615
+ + I +KLVF ET D +ET A+ YRK CD GRGA+ F++ARGK++EGIDF H+
Sbjct: 645 NMFRTITSNKLVFFETPDPIETMHAVACYRKCCDSGRGAILFAIARGKLSEGIDFKYHHA 704
Query: 616 RLVIMFGVPFQYTLS 630
R +I+ GVP+ Y+ S
Sbjct: 705 RGIILIGVPYLYSGS 719
>gi|159107698|ref|XP_001704126.1| TFIIH basal transcription factor complex helicase subunit [Giardia
lamblia ATCC 50803]
gi|157432178|gb|EDO76452.1| TFIIH basal transcription factor complex helicase subunit [Giardia
lamblia ATCC 50803]
Length = 840
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 192/747 (25%), Positives = 338/747 (45%), Gaps = 141/747 (18%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLEL----------KRALDAKGHCLLEMPTGTGKTI 50
M+ + +++ +PY + +Q M + KRAL LLE TG+GKT+
Sbjct: 1 MLIDVGGLSIVYPYPTVSKQQLQIMEHVCDVLRTGIGGKRALS-----LLEAKTGSGKTL 55
Query: 51 ALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG----------- 99
A+LS S+ + P ++++ RT+ ++ L E+ L+ ++
Sbjct: 56 AVLSAAASFWDAYPTAISRIVFLCRTIPVVDHVLGEIFHLNKARSDAFKSVAGATASSAV 115
Query: 100 --------------------PAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTA 139
P K+ A+ ++SR+ LCVN V A +D C K T
Sbjct: 116 TVGAEPSLKKEPPNSSVRAPPFRKLRALPITSRRRLCVNESVSRAAY---LDTECIKIT- 171
Query: 140 SWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL----RAFGKQQGWCPYFLA 195
R + E+ + C F+ + + YT+ + R + CPYF
Sbjct: 172 ---RGVDLEDTVM--CPAFKKTLEEEGELSIGRESYTIPEFINQCRTYNGGV-VCPYFAN 225
Query: 196 RHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVR--- 252
R ++ A+++V SY Y+LDPK AG + + + ++++ DEAHN++ +A+S+ +
Sbjct: 226 RRLLHTADIIVGSYNYVLDPKCAGPLGAILDQNTLLIIDEAHNLEYAACDAMSMHLSYKL 285
Query: 253 ----RQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNP 308
Q++ + +++ + + D LR E R ++ + L L +
Sbjct: 286 VVDCEQSIHAMSASIAHSARPPPPPFSPDRSFLRKE--RAIKTVQQDSRL------LFSG 337
Query: 309 ALPSDIL--KEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG---PVSFVASITA 363
+ P+D+L ++ + FL L R+V+ L+ +L ++ + K+ P V ++
Sbjct: 338 SAPADVLLLSSESYAAVKTPQQFLSGLLRIVRLLKEQL-SDRLTKDVVSLPHVDVLNLVR 396
Query: 364 HAGIDQKTLRFCYERLHSLMLTLEITDTD-----EFLH-------IQTICDFATLVGT-- 409
I + L+ E LH I D + +FL ++T+ F T +
Sbjct: 397 LQFITESFLQLSPEYLHYYQSYYCIFDKNLPQLVQFLSLLGYFGSVETLKHFRTYSSSLS 456
Query: 410 YTRGFSIIIEPF------DERMPHIPD--------PVLQLSCHDASLAVKPVFDRFQSVV 455
Y + F++I +P D + H + +L C D +A++PV+ F ++
Sbjct: 457 YEKFFTVIQKPQTSMGDDDTLLAHTQQIFEHSKHQTLYRLVCQDPFIALRPVYQYFPLIM 516
Query: 456 ITSGTL-------------------SPIDLYPRLLNF-----------HPVVSRSFKMSL 485
+ S TL + L R+L PVV + S
Sbjct: 517 MMSATLFASYECTDTSINSSGVAEATKPSLIERILGITMYAEQCERSVEPVVKKCIIESG 576
Query: 486 TRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYM 545
+ IC ++ +G+DQ ++T+F R+ P +NYG++L ++ S DG++ FF SY +M
Sbjct: 577 AQSNICIKIIGKGADQAKLTTQFFFRTTPSAVQNYGRILAQISSSTADGLIVFFPSYRFM 636
Query: 546 DEIIATWN--DSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGK 603
+++I WN S + + I +KLVF ET D +ET A+ YRK CD GRGAV F++ARGK
Sbjct: 637 EDLITLWNITSSNMFRVITNNKLVFFETPDPIETMHAVACYRKCCDSGRGAVLFAIARGK 696
Query: 604 VAEGIDFDRHYGRLVIMFGVPFQYTLS 630
++EGIDF H+ R +I+ GVP+ Y+ S
Sbjct: 697 LSEGIDFKYHHARSIILIGVPYLYSGS 723
>gi|407039328|gb|EKE39586.1| DNA repair helicase, putative [Entamoeba nuttalli P19]
Length = 563
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 232/448 (51%), Gaps = 75/448 (16%)
Query: 228 ESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQ--EIERFKATDAGRLRAEY 285
++++VFDEAHN+DNV ++A ++++ TLE AT +L R+ + IE K L+ EY
Sbjct: 6 QTLLVFDEAHNVDNVVVDAQTLTLSLDTLELATISLVRLTKLLSIEESKKP----LKNEY 61
Query: 286 NRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLE 345
RLVEGL R + P N +P + + F+ +++ +V + R +L
Sbjct: 62 KRLVEGL--RHSEPTKRIEEEN----------NIPIDTITSIQFVVLMKDIVNFFREKL- 108
Query: 346 TENVEKEGPVSFVASITAHAGIDQKTL--RFCYE-------------RLHSLMLTL---- 386
+E P+ I H I K + FC RLH L+ L
Sbjct: 109 -----REAPIHKKQHINEHCSIPIKNVVDSFCDSLALTPEVVTLIPLRLHLLIKALGDEY 163
Query: 387 ---EITDTDEFLH--IQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDAS 441
+ D F + + + DFA L+ + GFS + + + VL L C DA+
Sbjct: 164 GGRQDVKGDSFYYDDLYLVADFAALLCSCQEGFSYVPDVVKMDKDNCFHSVLNLICVDAA 223
Query: 442 LAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV-----SRSFKMSLTRDCICPMVLT 496
A++P ++F S+V TSGTLSP+ Y +L + VV + SF S+ R ICP+ +T
Sbjct: 224 NAIQPTLNKFHSIVFTSGTLSPLKTYINILGLNNVVEEKQITSSFS-SMRR--ICPLFVT 280
Query: 497 RGSDQLPV-------------------STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+G D + + S+++ RS+ + +YG+L++E+ VPDGI+C
Sbjct: 281 KGFDSISITSQSSDTSGSEIKQDRILFSSQYAYRSNRLIIHSYGRLILELSKTVPDGILC 340
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SYSYM+ I+ W++ I++ I +KL+F+E+ D ET+LA NYR AC G+GA+ F
Sbjct: 341 FFPSYSYMNICISYWDEMKIIESIYFNKLIFVESNDSEETSLAFQNYRLACHTGKGAILF 400
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPF 625
V RG+++EGI+F H R V++ G P+
Sbjct: 401 CVTRGRLSEGINFTNHLARAVLIIGAPY 428
>gi|294896832|ref|XP_002775733.1| helicase, putative [Perkinsus marinus ATCC 50983]
gi|239881998|gb|EER07549.1| helicase, putative [Perkinsus marinus ATCC 50983]
Length = 184
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 134/178 (75%), Gaps = 2/178 (1%)
Query: 455 VITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSD 513
V+TSGTLSP+ +Y +LL VVS + +SL RDCI P+++TR +D + +S+ F R D
Sbjct: 1 VLTSGTLSPLSMYSKLLGLDRVVVSEALDISLERDCIRPLIVTRSND-VVLSSSFQSRKD 59
Query: 514 PGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD 573
V++ YG LL E+V +VPDG+VCFF S +M +++ TW DSG L + HK+VF ET D
Sbjct: 60 EEVSKCYGTLLEELVQVVPDGVVCFFTSKVFMQQVVRTWYDSGTLARLSTHKVVFFETDD 119
Query: 574 VVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
VV TT+AL NYR+ACD GRG +F +VARGKV+EGIDFDRHYGR V++FGVPFQY+LS+
Sbjct: 120 VVSTTIALSNYREACDQGRGGLFLAVARGKVSEGIDFDRHYGRAVVLFGVPFQYSLSR 177
>gi|260941788|ref|XP_002615060.1| hypothetical protein CLUG_05075 [Clavispora lusitaniae ATCC 42720]
gi|238851483|gb|EEQ40947.1| hypothetical protein CLUG_05075 [Clavispora lusitaniae ATCC 42720]
Length = 315
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 123/166 (74%)
Query: 466 LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLV 525
+YP++LNF V+ S+ M+L R PM++T+GSDQ +S++F++R+DP V RNYG LL+
Sbjct: 1 MYPKMLNFQTVIQESYTMTLARRSFLPMIVTKGSDQTSISSRFEIRNDPSVVRNYGSLLI 60
Query: 526 EMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYR 585
E I PDG+V FF SY YM+ II+ W G+L E+ ++KL+ +ET D ET LAL+ YR
Sbjct: 61 EFSKITPDGMVVFFPSYLYMESIISMWQTMGVLDEVWKYKLILVETPDAQETALALETYR 120
Query: 586 KACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
KAC GRGAV SVARGKV+EGIDFD HYGR V+M G+PFQYT S+
Sbjct: 121 KACSNGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESR 166
>gi|355686448|gb|AER98061.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Mustela putorius furo]
Length = 182
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 92/182 (50%), Positives = 128/182 (70%)
Query: 70 LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDS 129
LIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++ V+
Sbjct: 1 LIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVMPLRFGKD 60
Query: 130 VDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGW 189
VD C TAS+VRA ++P++ C F+E ++ LP G+Y L DL+A G++QGW
Sbjct: 61 VDGKCHSLTASYVRAQYQQDPSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKALGRRQGW 120
Query: 190 CPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSV 249
CPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV
Sbjct: 121 CPYFLARYSILHANVVVYSYHYLLDPKIAELVSKELARKAVVVFDEAHNIDNVCIDSMSV 180
Query: 250 SV 251
++
Sbjct: 181 NL 182
>gi|312379509|gb|EFR25759.1| hypothetical protein AND_08621 [Anopheles darlingi]
Length = 972
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 168/663 (25%), Positives = 308/663 (46%), Gaps = 101/663 (15%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL 61
++ + V V FP++ Y Q YM +L + L + LLE PTGTGKT+++L ++++
Sbjct: 3 VYDIGGVPVDFPFEP-YQVQRDYMSKLLQCLQQSTNGLLESPTGTGKTLSILCASLAWLV 61
Query: 62 -------SKPENPVKLIYCTRTVHEMEKTLAELKLL-HNYQTRHLGPAAKILAIGLSSRK 113
+ K+IY +RT ++ + + ELK +NY + AI L SR
Sbjct: 62 HSRSHHNATKAGRTKIIYASRTHSQLSQAMQELKKSSYNY----------VRAIVLGSRI 111
Query: 114 NLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP- 172
LC++ V +EN +V C+++ A+ +C ++ E+ ++ L
Sbjct: 112 QLCIHPDVPKSENNATVTYLCKEKVAT------------RSCVYYRRVEQMKDSSELANV 159
Query: 173 GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
+ ++DL G + CP++L++ MV+ A+++ Y YLLD K + E+Q SV++
Sbjct: 160 PILDIEDLVTVGSRTKACPFYLSKEMVERADIIFMPYNYLLDAKARKANNLELQN-SVII 218
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNR----L 288
DEAHN++ +C ++ S + + A ++S + + + A+ AG E + L
Sbjct: 219 LDEAHNVERMCEDSGSAVLSSTDIALAIEDVSHVMETMGE-SASVAGLAETENEKKEFSL 277
Query: 289 VEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETEN 348
E L+ L + + + A P+ +R HF +V
Sbjct: 278 HELSLLKQQLLDLEKSVDDIAFPAS----------QREVHFHNV---------------- 311
Query: 349 VEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVG 408
G VS +IT + + + R ++R S + + +FL I +
Sbjct: 312 ---SGVVSLFGAITGY--LTTLSERNSFKRRGSGLQAVS-----DFLEIVYAGQGEEYIA 361
Query: 409 TYTRGFSIII---EP---------------FDERMPHIP----DPVLQLSCHDASLAVKP 446
R F + + EP ++ H P ++ C + ++
Sbjct: 362 AVRRCFKVYVVAEEPKQTKRNFKRADGWTATNQPAAHAPLKSSAKIVHFWCFNPGFGMRQ 421
Query: 447 VFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
+ R +S+V+TSGTL+P+ LN V+ + R + V+ +GSD +S
Sbjct: 422 LASRGVRSIVLTSGTLAPLTPLINELNISIPVTLENPHIIDRSQVLVRVIAKGSDGQLLS 481
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
+ ++ R++P R+ G+ L+ + ++P+G++ FF SY+ +D+ + W G+ EI K
Sbjct: 482 SVYNNRNNPDYIRSLGRTLLSVCPVIPNGLLVFFPSYTVLDKCVEGWQSGGLWSEINNRK 541
Query: 566 LVFIE--TQDVVETTLALDNYRKACDC-GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFG 622
+F+E T+D TT+ + Y++ D +GA+F +V RGKV+EG+DF GR V++ G
Sbjct: 542 AIFVEPRTKDAFNTTMD-EFYQRIQDTQAKGAIFLAVCRGKVSEGLDFADINGRAVLITG 600
Query: 623 VPF 625
+PF
Sbjct: 601 LPF 603
>gi|242003120|ref|XP_002422617.1| regulator of telomere elongation helicase 1 rtel1, putative
[Pediculus humanus corporis]
gi|212505418|gb|EEB09879.1| regulator of telomere elongation helicase 1 rtel1, putative
[Pediculus humanus corporis]
Length = 1016
Score = 198 bits (503), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 176/667 (26%), Positives = 288/667 (43%), Gaps = 109/667 (16%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL 61
+ L V FPY Y Q SYM ++ LD K H +LE PTGTGKT+ L + +T++
Sbjct: 3 VISLRGYDVSFPYPIPYDIQKSYMNKVLTCLDEKTHAVLESPTGTGKTLCLFAPVTAWAK 62
Query: 62 SKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGP-----AAKILAIG-------- 108
K +N V VH + + EL H T H GP +K+
Sbjct: 63 RKKKNAV--------VHVTQDSNKELNSPHFESTEHQGPWGVKSKSKVWYTARTHSQIAQ 114
Query: 109 -----------------LSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPN 151
+ +R LC+N VL ++ C++ S
Sbjct: 115 TVSEVRKCDIEGLHVRVMGARDQLCINELVLEEKDSYIKTVKCKELVKS----------- 163
Query: 152 IETCEFFE--NYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
+ C+++ +YEK V ++DL + GK G CPYFLA+ + A++++ Y
Sbjct: 164 -KKCKYYTKLSYEKDFKRFYQSGEVLDIEDLVSIGKSCGICPYFLAKRASETADILLLPY 222
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEA-------LSVSVRRQTLEGATRN 262
Y++D + ++Q + V++FDE HN+ + C E+ L V++ + ++ +
Sbjct: 223 NYIIDRESRESNGLQLQND-VIIFDEGHNVPSTCEESYEFSFTSLDVAIGIKNIQDVMLS 281
Query: 263 LSRINQEIERFKATDAGRLRAEYNRLVEGL-ALRGNLPIADAWLSNPALPSDILKEAVPG 321
LS++ +++ + D + + +VE L L L +A SN LP
Sbjct: 282 LSKLTEDLIEDEEIDVSKHVSNSMMMVEMLQKLESALSEMNA--SNELLP---------- 329
Query: 322 NIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHS 381
+ L +L + + + S S+T G +T E++ S
Sbjct: 330 -----------VSELYNFLSSAVLIDGISSFKSDSEKLSLT---GSTLETFNLL-EKMMS 374
Query: 382 LMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDAS 441
+M + D ++I D R F +I ER H L C + S
Sbjct: 375 VMYGSTVRSFD-----KSIVD---------RSFKCVITTDPER--HFAKK-FSLYCFNPS 417
Query: 442 LAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMV-LTRGS 499
+K + QS++ITSGTLSP+ + L V+ K + + C P V L G
Sbjct: 418 FGIKSLLALGSQSIIITSGTLSPLRTFIYELGLPKPVTLENK-HIAKKCQVPFVILGTGV 476
Query: 500 DQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW-NDSGIL 558
+ + + + R+DP + G L +++ +PDGI+ F SY+ M + +W D GI
Sbjct: 477 NNVKMDGAYKNRNDPKYVSSLGMSLTNLIASIPDGILLLFSSYTMMQSLKESWEKDLGIW 536
Query: 559 KEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLV 618
+ K VF+E ++ E ++NYR+A D G GA+ V RGK++EG+DF Y R V
Sbjct: 537 TRLNSLKRVFVEPRNKNEFINCMENYRRAIDSGNGAILMGVLRGKISEGMDFKDQYCRGV 596
Query: 619 IMFGVPF 625
+ GVPF
Sbjct: 597 FIIGVPF 603
>gi|302129716|ref|NP_001013328.2| regulator of telomere elongation helicase 1 [Danio rerio]
Length = 1177
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 183/696 (26%), Positives = 294/696 (42%), Gaps = 123/696 (17%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY-- 59
+ KL+ + V FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL ++
Sbjct: 3 VIKLKGINVDFPF-TPYPCQEDYMSKVIECLQKKVNGVLESPTGTGKTLCLLCSTLAWRD 61
Query: 60 -------------------------------VLSKPENPV------KLIYCTRTVHEMEK 82
+ + P K+IY +RT ++ +
Sbjct: 62 HFKDTISARKITERMGGAELFADRPMSSWGTAATDGDTPTYYTDIPKIIYASRTHSQLTQ 121
Query: 83 TLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWV 142
+ ELK N R KI +G SR+ LC+N V+ E+ CR + +S
Sbjct: 122 VVNELK---NTSYR-----PKICVLG--SREQLCINQEVMRHESNHIKVHMCRAKVSS-- 169
Query: 143 RALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFA 202
+C F+ N ++ ++ + + ++DL GK+Q CPY+L+R + Q A
Sbjct: 170 ----------RSCIFYNNVDEKSTDKEIVNSILDVEDLVKTGKKQRVCPYYLSRSLKQHA 219
Query: 203 NVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRN 262
+V+ Y YLLDPK + E+ K +VV+FDEAHN++ +C E+ S + L A
Sbjct: 220 DVIFMPYNYLLDPKSRRAHNIEL-KGAVVIFDEAHNVEKMCEESTSFDLTPHDLISAIEA 278
Query: 263 LSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGN 322
+ R+ +E +A+D + + + VE L N L DI
Sbjct: 279 VDRLLRE----QASDISKADSAEDFNVESL--------------NSGLKMDIT------T 314
Query: 323 IRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSL 382
I + + L L + + + K P SF+ + A ++ KT E + +
Sbjct: 315 IAKVKQILMDLETAINDFEMPANNQGITK--PGSFIFELFEMANVNSKTKTETVEAMEQI 372
Query: 383 MLTLEITDTDEFLH---IQTICDFATLV--------------GTYTRGFSIIIEPFDE-- 423
L FL+ +Q + D LV G + F + I P +
Sbjct: 373 TGYL-AGRPGVFLNTSGLQKVADIIQLVFVAEPAEGSKKSQTGNSLKEFKVHIHPDNSNF 431
Query: 424 RMPHIPD-----------PVLQLSCHDASLAVKPVF-DRFQSVVITSGTLSPIDLYPRLL 471
+ I D VL C +++ + + +++TSGTLSP+ + +
Sbjct: 432 KKKQITDVWASSSTKKQGNVLSYWCFSPGFSMQELLRQEVRCIILTSGTLSPLSSFTCEM 491
Query: 472 NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIV 531
VS + RD I ++ +G D + +ST FD R P + G LV + +V
Sbjct: 492 QIPFPVSLENPHVIQRDQIFVSIIEKGPDGVQLSTAFDRRFVPENMSSMGNTLVNLSRVV 551
Query: 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD-- 589
P G++ FF SY MD+ + W G I K +F+E + T +D Y D
Sbjct: 552 PHGLLVFFPSYPVMDKTLEFWRAKGHADRIENVKPMFVEPRGKGTFTEVIDGYYGKVDDP 611
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
G FF+V RGK +EG+DF YGR V++ G+PF
Sbjct: 612 NSSGGSFFAVCRGKASEGLDFADTYGRGVVITGLPF 647
>gi|229891620|sp|P0C928.1|RTEL1_DANRE RecName: Full=Regulator of telomere elongation helicase 1
Length = 1177
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 183/696 (26%), Positives = 294/696 (42%), Gaps = 123/696 (17%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY-- 59
+ KL+ + V FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL ++
Sbjct: 3 VIKLKGINVDFPF-TPYPCQEDYMSKVIECLQKKVNGVLESPTGTGKTLCLLCSTLAWRD 61
Query: 60 -------------------------------VLSKPENPV------KLIYCTRTVHEMEK 82
+ + P K+IY +RT ++ +
Sbjct: 62 HFKDTISARKITERMGGAELFADRPMSSWGTAATDGDTPTYYTDIPKIIYASRTHSQLTQ 121
Query: 83 TLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWV 142
+ ELK N R KI +G SR+ LC+N V+ E+ CR + +S
Sbjct: 122 VVNELK---NTSYR-----PKICVLG--SREQLCINQEVMRHESNHIKVHMCRAKVSS-- 169
Query: 143 RALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFA 202
+C F+ N ++ ++ + + ++DL GK+Q CPY+L+R + Q A
Sbjct: 170 ----------RSCIFYNNVDEKSTDKEIVNSILDVEDLVKTGKKQRVCPYYLSRSLKQHA 219
Query: 203 NVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRN 262
+V+ Y YLLDPK + E+ K +VV+FDEAHN++ +C E+ S + L A
Sbjct: 220 DVIFMPYNYLLDPKSRRAHNIEL-KGAVVIFDEAHNVEKMCEESTSFDLTPHDLISAIEA 278
Query: 263 LSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGN 322
+ R+ +E +A+D + + + VE L N L DI
Sbjct: 279 VDRLLRE----QASDISKADSAEDFNVESL--------------NSGLKMDIT------T 314
Query: 323 IRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSL 382
I + + L L + + + K P SF+ + A ++ KT E + +
Sbjct: 315 IAKVKQILMDLETAINDFEMPANNQGITK--PGSFIFELFEMANVNSKTKTETVEAMEQI 372
Query: 383 MLTLEITDTDEFLH---IQTICDFATLV--------------GTYTRGFSIIIEPFDE-- 423
L FL+ +Q + D LV G + F + I P +
Sbjct: 373 TGYL-AGRPGVFLNTSGLQKVADIIQLVFVAEPAEGSKKSQTGNSLKEFKVHIHPDNSNF 431
Query: 424 RMPHIPD-----------PVLQLSCHDASLAVKPVF-DRFQSVVITSGTLSPIDLYPRLL 471
+ I D VL C +++ + + +++TSGTLSP+ + +
Sbjct: 432 KKKQITDVWASSSTKKQGNVLSYWCFSPGFSMQELLRQEVRCIILTSGTLSPLSSFTCEM 491
Query: 472 NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIV 531
VS + RD I ++ +G D + +ST FD R P + G LV + +V
Sbjct: 492 QIPFPVSLENPHVIQRDQIFVSIIEKGPDGVQLSTAFDRRFVPENMSSMGNTLVNLSRVV 551
Query: 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD-- 589
P G++ FF SY MD+ + W G I K +F+E + T +D Y D
Sbjct: 552 PHGLLVFFPSYPVMDKTLEFWRAKGHADRIENVKPMFVEPRGKGTFTEVIDGYYGKVDDP 611
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
G FF+V RGK +EG+DF YGR V++ G+PF
Sbjct: 612 NSSGGSFFAVCRGKASEGLDFADTYGRGVVITGLPF 647
>gi|407036107|gb|EKE38006.1| DNA repair helicase, putative [Entamoeba nuttalli P19]
Length = 467
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 176/333 (52%), Gaps = 40/333 (12%)
Query: 333 LRRLVQYLRGRLETENVEKEGPVS---------FVASITAHAGIDQKTLRFCYERLHSLM 383
++R+V + R +L +K+ + V + + + + ++F RLH L+
Sbjct: 1 MKRIVNFFREKLHEAPTKKQQRIKEQHSIQVKDIVTGLCDSSVLTPEIIKFIPNRLHLLI 60
Query: 384 LTL-------EITDTDEFLH--IQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQ 434
TL + D F + + + DFA L+ + GFS + + VL
Sbjct: 61 QTLGDEYGGRQDVKGDSFYYDALYLVADFAALLCSSQEGFSYVPDVVKIDKDDYYHSVLN 120
Query: 435 LSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDC---IC 491
L C DA+ A++P+ +RF S+V TSGTLSP+ Y +L VV S T D IC
Sbjct: 121 LVCVDAANAIQPILNRFHSIVFTSGTLSPLKTYINILGLKNVVEEKQIRSPTSDIVRRIC 180
Query: 492 PMVLTRG-------------------SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
P+ +T+G SD L +S++F R+D + +YGKL+VE+ VP
Sbjct: 181 PLFVTKGFDRIAITSQLADSKYAGARSDPLILSSQFFYRADRLILHSYGKLIVELSKTVP 240
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR 592
DG++CFF SY+YM+ I+ WN+ I + I Q+KL+FIE+++ ET+LA NY+ AC G+
Sbjct: 241 DGVLCFFPSYAYMNICISYWNEMKIFESIAQNKLIFIESKNAYETSLAFQNYKLACHTGK 300
Query: 593 GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GAV V RG+++EGIDF H R V++ G P+
Sbjct: 301 GAVLLCVTRGRLSEGIDFTNHLARAVLIIGAPY 333
>gi|300122780|emb|CBK23797.2| unnamed protein product [Blastocystis hominis]
Length = 376
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 148/234 (63%), Gaps = 36/234 (15%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
VL+L C DA ++P+F F+ ++ITSGTLS +DLYP+LL FHP+V++S + +C
Sbjct: 23 VLKLICCDAGYVMQPLFTAFKHIIITSGTLS-LDLYPKLLQFHPLVAKSICIDRNSH-LC 80
Query: 492 PMVLTRGSDQ-------------------------LPVSTKFDMRSDPGVARNYGKLLVE 526
P+V++RG+DQ + +S+K+ +R++ VA +YG LLVE
Sbjct: 81 PVVVSRGNDQGRMTVTNAMEVPDTKPSSSLSAKSDVKLSSKYTLRANNQVAVSYGSLLVE 140
Query: 527 MVSIVPDGIVCFFVSYSYMDE---------IIATWNDSGILKEIMQHKLVFIETQDVVET 577
M +VPDGI+CFF SYS++ + W+ G++++I +KL++IE++D+ E+
Sbjct: 141 MARVVPDGIICFFTSYSHISNPFLIWNRCLFLCEWDAHGVIRDIYNYKLLYIESRDINES 200
Query: 578 TLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+A+ NYRK+CD G+GAV V RG ++EG+ F+ HYGR I+ GVPF TLSK
Sbjct: 201 NVAVQNYRKSCDEGKGAVLLCVVRGHISEGVHFNDHYGRCCILMGVPFLNTLSK 254
>gi|300175036|emb|CBK20347.2| unnamed protein product [Blastocystis hominis]
Length = 376
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 148/234 (63%), Gaps = 36/234 (15%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
VL+L C DA ++P+F F+ ++ITSGTLS +DLYP+LL FHP+V++S + +C
Sbjct: 23 VLKLICCDAGYVMQPLFAAFKHIIITSGTLS-LDLYPKLLQFHPLVAKSICIDRNSH-LC 80
Query: 492 PMVLTRGSDQ-------------------------LPVSTKFDMRSDPGVARNYGKLLVE 526
P+V++RG+DQ + +S+K+ +R++ VA +YG LLVE
Sbjct: 81 PVVVSRGNDQGRMTVTNAMEVPDTKPSSSLSAKSDVKLSSKYTLRANNQVAVSYGSLLVE 140
Query: 527 MVSIVPDGIVCFFVSYSYMDE---------IIATWNDSGILKEIMQHKLVFIETQDVVET 577
M +VPDGI+CFF SYS++ + W+ G++++I +KL++IE++D+ E+
Sbjct: 141 MARVVPDGIICFFTSYSHISNPFLIWNRCLFLCEWDAHGVIRDIYNYKLLYIESRDINES 200
Query: 578 TLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+A+ NYRK+CD G+GAV V RG ++EG+ F+ HYGR I+ GVPF TLSK
Sbjct: 201 NVAVQNYRKSCDEGKGAVLLCVVRGHISEGVHFNDHYGRCCILMGVPFLNTLSK 254
>gi|123486053|ref|XP_001324631.1| helicase [Trichomonas vaginalis G3]
gi|121907517|gb|EAY12408.1| helicase, putative [Trichomonas vaginalis G3]
Length = 880
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 173/655 (26%), Positives = 288/655 (43%), Gaps = 93/655 (14%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL----SK 63
+ V FP+ YP Q + M + AL + LLE PTGTGKT++LL+ Y K
Sbjct: 3 IDVDFPFSTPYPAQKAIMAKTMVALKQSENALLESPTGTGKTLSLLASSLGYQTWLQSQK 62
Query: 64 PENP-------------------------VKLIYCTRTVHEMEKTLAELKLLHNYQTRHL 98
PE P +K+ Y +RT +++ + ++ELK R L
Sbjct: 63 PEPPKKIDPAALYGEKYTELDPETEEEPQLKVYYTSRTHNQLSQVVSELK-------RKL 115
Query: 99 GPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFF 158
+AI L+SR+ LC+N V N+ +DAACR E+ CEF
Sbjct: 116 PTYRPKMAI-LASRQQLCINDNV---RNKPDIDAACR-----------LEHGTKHNCEFG 160
Query: 159 ENYEKAASAAVLPPGVYT---LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP 215
++ +++P G Y+ +++L +++ CPYF+ R++ + A ++ Y Y+LD
Sbjct: 161 KSM--TIPRSMMPDGEYSKYDIENLIDVCREEVKCPYFVTRNLAKRAEFILAPYNYILDG 218
Query: 216 KVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKA 275
++ G + E+ SVV+FDE HNI+ +C +A S+S+ + +S I I
Sbjct: 219 RIRGTMKIELAN-SVVIFDEGHNIEGICRDAASLSL-------DYKEVSYIQGYIATLAQ 270
Query: 276 TDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRR 335
+ RL+ L++ W + I + N R E F
Sbjct: 271 REDMRLQIGNTLFQHFLSIGRLFDKIFEWFTR-----TIEESPWEQNRNRQETFFQ---- 321
Query: 336 LVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL--EITDTDE 393
Q + L + KE V + + ++KT + +++ + + T
Sbjct: 322 -YQDVEMILSGWTLNKERFVLYKEDMEEIISANEKTTGDQDSIIPTIVAAILGKTLTTLN 380
Query: 394 FLHIQ-TICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQ 452
F++ +ICDF ++ Y + I +P L+L C +A + + +
Sbjct: 381 FIYTNDSICDFRLIITDYEKNKEEI------------NPKLELLCMSPGVAFRSIVAKTH 428
Query: 453 SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
SV+ITSGTLSP+ Y L S K + + M++ R ST + +
Sbjct: 429 SVIITSGTLSPLTQYESELRTKFTHQLSAKHVIDPSQVLSMIIQRMDGVELTSTAKSLNN 488
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ 572
+ + + G +++ +V VPDGI+ FF S S M + + W +L EI + K VF E
Sbjct: 489 N--IYKKLGDIVLTIVQKVPDGILLFFPSGSTMRKCLEIWRSESLLYEIQKFKPVFNENS 546
Query: 573 DVVETTL--ALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ A YR + + G+G + SV RG+V+EG DF R VI+FG+P+
Sbjct: 547 GNKKKGEGDAFKEYRSSINKGKGGLLISVCRGRVSEGTDFADRQARCVIIFGIPY 601
>gi|399218668|emb|CCF75555.1| unnamed protein product [Babesia microti strain RI]
Length = 838
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 175/672 (26%), Positives = 316/672 (47%), Gaps = 106/672 (15%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENP 67
+ V FPY IY Q + + R+++ + L+E PTGTGKT+ LL +Y+ K
Sbjct: 11 IDVQFPY-KIYEPQKLLIEAIIRSIEYGQNALIESPTGTGKTLCLLCASLAYLCDKRIPG 69
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNY-QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
+K+IY TRT ++ + E K + Y + R +G A IL SR LC++S+ +
Sbjct: 70 LKIIYTTRTHGQLNHFINEFKKVPYYDRLREIGINATILG----SRDKLCIHSQCSKMKG 125
Query: 127 RDSVDAACRKRTASWVRALAAENPNIETCEFFENY-EKAASAAVLPPGVYTLQDLRAFGK 185
+++D C+ AL + TC ++ Y K + + V ++DL + GK
Sbjct: 126 -NALDGYCK--------ALV----HTRTCTYYNGYRSKEYNNLNILMDVMDVEDLTSMGK 172
Query: 186 QQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIE 245
+ G+CP+++ R + +N ++ Y YL + I ++ +++++ DEAHNID+
Sbjct: 173 KYGFCPFYVMREAHKTSNFILMPYNYLFCQTIRDSIELDLN-DAIIIIDEAHNIDDFAER 231
Query: 246 ALSVSVRR----QTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIA 301
+S ++ + ++++ R ++ +N+++ + D L N+L L+L L
Sbjct: 232 VMSFNIYQMDVIRSIDFLKRIITTVNEDMYNKEKDDNPYL----NKL---LSLYATLQRL 284
Query: 302 DAWLSNPALPSDILKEAVPGNIRRAE-HF--------------LHVLRRLVQYLRGRLET 346
D +LS+ L ++ + I+R + H+ + +L L + +
Sbjct: 285 DCFLSSLDLDNNRMMHK----IKRVDFHYTVGKVGDDFVIFDTISILNTLTSAILDKNSQ 340
Query: 347 ENVEKE-GPVSFV-------ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQ 398
++E+E G ++F+ S + I+ +++ +RL + +L L T ++L
Sbjct: 341 NSLEQEFGCLTFIMATKISDESFNKNVNIEIQSI----DRLKNSLLQL----TSQWLRAN 392
Query: 399 TICDFATL-VGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLA-VKPVFDRFQSVVI 456
+A L + T + L C +AS K ++ +++++
Sbjct: 393 CQHFYAVLRIDTGNNNNKFMYRS------------LLFECMNASCTFTKLKNEKIRNLIL 440
Query: 457 TSGTLSPID-----------LYPRLLNFHPVVSR--------SFKMSLTRDCICPMVLTR 497
TSGTLSPID +P +L ++S S K+ + R+ V
Sbjct: 441 TSGTLSPIDNFISNISGGYIKFPIVLENEHIISSDRVWVGCISSKLKIFRERFRDKV-GN 499
Query: 498 GSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGI 557
DQ +ST + RS G LL V VP GI+CFF SY+ M+E I W ++GI
Sbjct: 500 FEDQQLIST-YSTRSSHEYIVKLGILLKLFVKSVPGGILCFFPSYTNMNETIEVWKNTGI 558
Query: 558 LKEIMQHKLVFIETQDVVETTLALDN----YRKACDCGRGAVFFSVARGKVAEGIDFDRH 613
+ +KL+FIE ++ ++D+ ++ D GRGA+FF+V RGK+AEG+DF
Sbjct: 559 YHNLYSYKLIFIEVVKSTDSNDSIDDNLNSFKNVVDSGRGALFFAVFRGKIAEGVDFPND 618
Query: 614 YGRLVIMFGVPF 625
Y R + + G+P+
Sbjct: 619 YCRGIFICGIPY 630
>gi|238584800|ref|XP_002390673.1| hypothetical protein MPER_10013 [Moniliophthora perniciosa FA553]
gi|215454360|gb|EEB91603.1| hypothetical protein MPER_10013 [Moniliophthora perniciosa FA553]
Length = 343
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 104/127 (81%)
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
+++F++R+DP V RN+G +LVE IVPDGIV FF SY YM+ I+A WND GIL E+ +H
Sbjct: 35 NSRFEVRNDPAVVRNFGSILVEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWKH 94
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+F+ET D ET++AL+NYR+ACD GRGAV SVARGKV+EGIDFD +YGR VIMFGVP
Sbjct: 95 KLIFVETPDANETSIALENYRRACDNGRGAVLLSVARGKVSEGIDFDHNYGRAVIMFGVP 154
Query: 625 FQYTLSK 631
+QYT S+
Sbjct: 155 YQYTESR 161
>gi|353232615|emb|CCD79969.1| putative regulator of telomere elongation helicase 1 rtel1
[Schistosoma mansoni]
Length = 1165
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 173/712 (24%), Positives = 308/712 (43%), Gaps = 129/712 (18%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
++ V + FPY Y Q+ YM ++ +L+ H +LE PTGTGKT+ LL ++ L K
Sbjct: 6 IDGVEIDFPYQ-PYDCQFEYMTKVLLSLNEGKHAILESPTGTGKTLCLLCASLAW-LDKQ 63
Query: 65 ENPVKLIYCTRTVHE-----------------MEKTLAELKLLHN-----YQTR-HLGPA 101
N V+LI T H+ + LA L ++N Y +R H A
Sbjct: 64 ANSVQLISATDAKHQNTMGKRPTSDNVDNALSHQNFLASLGKVNNGCKIIYASRTHSQLA 123
Query: 102 AKILAIG-----------LSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP 150
I A+ + SR LC+ V + E+ + ACR R +
Sbjct: 124 QAINALKGTVYSRRSVSVVGSRDQLCLLPDVTSLESNSAKIYACRMRVQT---------- 173
Query: 151 NIETCEFFENYEKAAS---AAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVY 207
TCE+F N++ + G+ ++DL +G++ CPYF++R + ++++
Sbjct: 174 --RTCEYFRNFDSKRDEILTNLKSEGIVDIEDLSNYGQKIKCCPYFISRELKTDSSLIFM 231
Query: 208 SYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL---- 263
Y Y+LDP++ + + ++ + V+FDEAHNI+ VC +A SV++ L A ++
Sbjct: 232 PYNYVLDPRIRSLYNINLE-NTTVIFDEAHNIEQVCEDASSVTLSSALLASAIEHVKCVC 290
Query: 264 ------SRINQEIE------RFKATDAGRLRAEYNR------------LVEGLA------ 293
++ QEIE +L NR +E L+
Sbjct: 291 EVVLDHTKEQQEIELSDSNCNVNQNSEQKLSVIMNRKGLFDMTHPEGNAIEALSIEKMIT 350
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRL----------VQYLRGR 343
L+G L + + +P + L + G + +++ LH + R+ ++ +G
Sbjct: 351 LKGQLIELERLIDELNVPPEGLTK--DGRVIKSKKRLHCIMRIYFTLLSLDVKIRKTKGL 408
Query: 344 LETENVEKE------GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHI 397
E K G + + + + CY RLH L + +++
Sbjct: 409 HEVSEFLKTVFGYLPGEANVTFNFKTNFKLQHNDSISCY-RLHIKDDILSANNCNKYGKN 467
Query: 398 QTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR-FQSVVI 456
T VGT R S C A++ + + + +++
Sbjct: 468 AWDTQPNTTVGTTNRTISYW-------------------CFSPGRAIQQLIQQNVRCIIL 508
Query: 457 TSGTLSPIDLYPRLLNFH-PVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPG 515
TSGTL P++ LN P+ R+ + + D + ++ RG D ++ + +R
Sbjct: 509 TSGTLYPVEPIEAELNLKFPITLRNPHV-INPDQLNLSIIPRGPDGEKLNATYSVRETSA 567
Query: 516 VARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV 575
+ G LL+++ +VP G++ FF SYS+M + I W D + +++ + K +FIE ++
Sbjct: 568 YRNSLGLLLIQLADVVPAGLLIFFPSYSFMSQCIEYWKDGDVYEKLSRSKHIFIEPREKN 627
Query: 576 ETTLALDNYRK-AC-DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + YRK AC + GA+ F+V RG+V+EG+D + GR V + G+P+
Sbjct: 628 QFNKIFNEYRKTACIENSVGAILFAVMRGRVSEGLDLADNAGRGVFILGIPY 679
>gi|347964194|ref|XP_311162.5| AGAP000634-PA [Anopheles gambiae str. PEST]
gi|387912925|sp|Q7QEI1.5|RTEL1_ANOGA RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|333467418|gb|EAA06834.5| AGAP000634-PA [Anopheles gambiae str. PEST]
Length = 991
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 173/706 (24%), Positives = 308/706 (43%), Gaps = 142/706 (20%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL- 61
+ + + V FP++ Y Q +YM ++ L K + +LE PTGTGKT++LL +++L
Sbjct: 4 YMINGIPVNFPFEP-YELQKNYMAKVIECLQNKTNGVLESPTGTGKTLSLLCSSMAWLLH 62
Query: 62 --------------SKPENP--------------------------VKLIYCTRTVHEME 81
+ PE P +K+IY +RT ++
Sbjct: 63 MKSKQPKHRMETIDTLPEPPELSNAKHAALDPEQALALQQQKANAKMKIIYASRTHSQLS 122
Query: 82 KTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
+ + ELK T +L + +I L SR LC++ + EN CR+
Sbjct: 123 QAMQELK-----NTSYLF----VRSIILGSRDQLCIHPDISKQENNAIKTVLCRE----- 168
Query: 142 VRALAAENPNIETCEFFENYEKAA---SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHM 198
++ A N C F+ E A A +P V ++DL G++ CPY+L++ +
Sbjct: 169 --SVKARN-----CSFYNRVETAKDRPDVATVP--VMDIEDLVTVGRKLKACPYYLSKEL 219
Query: 199 VQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEG 258
V+ A+V+ Y YLLDPK +Q +V++ DEAHN++ +C E S +R +
Sbjct: 220 VEQADVIFMPYNYLLDPKARKSNGLSLQN-TVIILDEAHNVEKMCEEVGSALLRSSDIAL 278
Query: 259 ATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEA 318
A + S + + + G + ++ L L LKE
Sbjct: 279 AIEDTSSVIKSMMDGGGAWTGDGEKQLELTLDDLVL--------------------LKEI 318
Query: 319 VPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYER 378
+ G + +A + +L + +G P +++ + A I + +
Sbjct: 319 LLG-VEKAVDDIPIL-----FSQGGTTH-------PGTYIFDLLEKANIKFGNINVVLQV 365
Query: 379 LHSLMLTLEITDTDEFLH----IQTICDFATLVGTYT---------RGFSIIIEPFDERM 425
++SL+ + T F+ +Q++ DF +V + + F + IEP + +
Sbjct: 366 MNSLITHITTEKTGGFVRRGAGLQSMVDFLEVVFASSGPEYRQAVEKCFRVHIEPEEPKQ 425
Query: 426 ----------------PHIPDPVLQLS------CHDASLAVKPVFDR-FQSVVITSGTLS 462
+ PV S C + ++ + D +S+++TSGTL+
Sbjct: 426 LAKGGVKRADGWTATKQPLKAPVKSTSKVINFWCFNPGFGMRQLVDSGTRSIILTSGTLA 485
Query: 463 PIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGK 522
P+ + L+ VS + R + V+T G D++ +++ F RS+P + G+
Sbjct: 486 PLKPFISELSLPVAVSLENPHIIARSQVYVKVITHGPDRVELNSSFKNRSNPEYIASLGR 545
Query: 523 LLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET--QDVVETTLA 580
+ + I+P G++ FF SY +++ W SGI +I + K +F+E +D TT+A
Sbjct: 546 TALSLCPIIPGGLLIFFPSYPLLNKCSEEWQASGIWGQISRLKQIFVEPRGKDQFTTTMA 605
Query: 581 LDNYRKACD-CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ Y + D RGA+F +V RGKV+EG+DF GR V++ G+PF
Sbjct: 606 -EYYAQVRDPASRGAIFMAVCRGKVSEGLDFADANGRAVMITGLPF 650
>gi|440492760|gb|ELQ75301.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, partial [Trachipleistophora
hominis]
Length = 493
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 188/354 (53%), Gaps = 57/354 (16%)
Query: 320 PGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERL 379
PGN+R+ H L +LRR++++LR +L++ ++ P +FV S+ I ++TL F +R
Sbjct: 47 PGNLRKDVHVLSILRRILEFLRIKLKSTHLTINTPHNFVCSLENLTFISRRTLSFLKKRF 106
Query: 380 HSLMLTLEITDTDEFLHIQTICDFATLVGTY--TRGFSIIIEPFDERMPHIPDPVLQLSC 437
++ L + + D+ + + D + Y + FS+I EP + P + LSC
Sbjct: 107 QAVKLPFD-ENVDK---LNVLVDMMDTLARYAGSNAFSVIFEPLLSN--NSLSPKITLSC 160
Query: 438 HDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHP-------------VVSR----- 479
+D+ +A+ + +F+S+++TSGTL+P D+Y RLL +VS+
Sbjct: 161 NDSRIAMSAL--KFRSIMVTSGTLTPFDVYMRLLGITGRSVSIRGSTKEVLIVSKGNDQI 218
Query: 480 --SFKMSLTRDCICPMVLTRGSDQLPV---------------------STKFDMRSDPGV 516
S +SL D P SD +P+ S+ + +R+
Sbjct: 219 NISSDVSLESDKTAPA--RPSSDAVPITETYGSVRNAGLANDFESALLSSSYKLRTSSST 276
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVE 576
RNY L+ ++ IVPDG++ FF SY +M EII+ ++K++ HKL+FIET + E
Sbjct: 277 VRNYATLIKDLCDIVPDGMIIFFPSYVFMHEIISKC--EFMIKKL--HKLIFIETINYEE 332
Query: 577 TTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
+ AL NY++A GRGA+ F VARGKV+EGIDF GR V++ GVPF +T S
Sbjct: 333 SINALMNYKRAIKHGRGAIMFCVARGKVSEGIDFKNEEGRCVLLIGVPFAFTES 386
>gi|260789809|ref|XP_002589937.1| hypothetical protein BRAFLDRAFT_231064 [Branchiostoma floridae]
gi|229275123|gb|EEN45948.1| hypothetical protein BRAFLDRAFT_231064 [Branchiostoma floridae]
Length = 823
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 178/701 (25%), Positives = 306/701 (43%), Gaps = 113/701 (16%)
Query: 1 MIF-KLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----SL 55
M+F K+ V V FP++ Y Q SYM ++ + L + +LE PTGTGKT+ LL +
Sbjct: 1 MVFLKVRGVDVEFPFEP-YACQRSYMEKVIQCLQEGTNGVLESPTGTGKTLCLLCATLAW 59
Query: 56 ITSYV-----------LSKPENPV-------------------------------KLIYC 73
++YV +K E+ K+IY
Sbjct: 60 RSAYVAKMQFEGLKQQFTKDEDGQSTYGELLANQLGGAAGWGNTEQAAGPFMEIPKIIYA 119
Query: 74 TRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAA 133
+RT ++ + +AELK N +L K+ +G SR+ LC++ V N +
Sbjct: 120 SRTHSQLSQAVAELK---NTSYSNL----KVCILG--SREQLCIHPEVQEQTNNSTKVHM 170
Query: 134 CRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYF 193
C+ +T+S + C F+ N + P ++DL GK+ CPYF
Sbjct: 171 CKAKTSSRL------------CTFYNNLDGNEKEFTEAP--LDIEDLVKVGKKHKVCPYF 216
Query: 194 LARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRR 253
+AR + A+++ Y YLLDPK S ++ K +VVFDEAHN++ +C E+ S +
Sbjct: 217 MARELKSSADIIFMPYNYLLDPKSRKAHSVDL-KSHIVVFDEAHNLEKMCEESSSFDLTS 275
Query: 254 QTLEGATRNLSRINQEI-------ERF---KATDAGRLRAEYNRLVEGLALRGNLPIADA 303
L L +++ + E+F +T ++ L+ L G L +
Sbjct: 276 YDLASCVEELDNLHKSVAEIEVLNEKFHTESSTHGLVCLYDFYFLLNVSFLVGMLLELEK 335
Query: 304 WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITA 363
+ + LP++ PG+ + L L+ +T + E VA T
Sbjct: 336 KIDSLPLPANGTGLTRPGSF---------IYELFAELQITFDTAPILLEVLDKVVAYATT 386
Query: 364 HAGIDQKTLRFCYER--LHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPF 421
+ G ++ F + + L L+I + + Q A L+ Y + + E F
Sbjct: 387 NTGT---SVVFGNKAAGVSKLGDVLKIAFSHDSSASQKGSKLANLMAKYYKVYVKTEEGF 443
Query: 422 DERMPHIPDP--------------VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDL 466
++ DP L C A++ + + +S+++TSGTLSP++
Sbjct: 444 QKKSKANADPWATTSSSKPKKQGRTLSYWCFSPGHAMQDLANHGVRSIILTSGTLSPLES 503
Query: 467 YPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVE 526
+ ++ V + R + ++T+G D + +++ ++ R+ + G +V
Sbjct: 504 FTAEMHIDFPVHLENPHVIERHQVWLGMVTKGPDGVRLNSSYENRNSTDYINSLGNAIVN 563
Query: 527 MVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDN-YR 585
IVP+G++ FF SY M++ + W DSGI I Q+K + +E + + A++ Y
Sbjct: 564 FARIVPNGLLVFFPSYPVMNKCLEVWQDSGISNRISQYKTMVVEPRGKTQFVEAMEQFYE 623
Query: 586 KACDCG-RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
K D GA FF+V RGKV+EG+DF GR V++ G+PF
Sbjct: 624 KINDPTLNGAAFFAVCRGKVSEGLDFADINGRAVVITGLPF 664
>gi|395506651|ref|XP_003757644.1| PREDICTED: regulator of telomere elongation helicase 1 [Sarcophilus
harrisii]
Length = 1361
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 171/691 (24%), Positives = 297/691 (42%), Gaps = 118/691 (17%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPFQP-YKCQEDYMAKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHFK 64
Query: 54 SLITSYVLSK--------PENPV--------------------KLIYCTRTVHEMEKTLA 85
IT+ +++ P+ P+ K+IY +RT ++ + ++
Sbjct: 65 DTITARKIAERMQGVELFPDRPMSSWGNAATDGDTTAYYTDIPKIIYASRTHSQLSQVIS 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R K+ +G SR+ LC+N V E+ CRK+ ++
Sbjct: 125 EL--------RSTTYRPKVCVLG--SREQLCINPEVRKIESNHIQIHVCRKKVST----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ ++ L + ++DL G + CPY+L+R + Q A+++
Sbjct: 170 -------HSCHFYNNVEEKSTEKELVTPILDIEDLVKGGNRHKVCPYYLSRTLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ VC E+ S + L L
Sbjct: 223 FMPYNYLLDSKTRRAHNIDL-KGTVVIFDEAHNVEKVCEESASFDLTPFDL---ASGLDA 278
Query: 266 INQEI-ERFKATDAGRLRAEYNRLVEGLALRGNLP-IADAWLSNPALPSDILKEAVPGN- 322
INQ + E+ K + AE+N ++ L L IA + L + I +PGN
Sbjct: 279 INQVLEEQTKLLQQNEIHAEFNMELDNSGLNMELEDIAKVKIILLKLENVIDAIELPGNN 338
Query: 323 --------------------IRRAEHFLHVLRRLVQYLRGRL----ETENVEK-EGPVSF 357
+ L L +++Q+L GR T ++K +
Sbjct: 339 TGITKPGSYIFDLFAEAHITFQTKSSLLESLEQIIQFLAGRTGIFNNTAGLQKLVDIIQI 398
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
V SI G+ + + + + + L+ ++ + T+ +
Sbjct: 399 VFSIDRPEGVANPIMGHTVSKYYKVHIHLDTSNRKK-----------------TQRTDVW 441
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPV 476
P ++ I L C +++ + + +++++TSGTL+PI + +
Sbjct: 442 SAPVAKKQGKI----LSYWCFSPGFSMQELIQQEVRTIILTSGTLAPISSFTMEMQIPFP 497
Query: 477 VSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIV 536
V + + I ++ +G D + +S+ +D R + GK + + +VP G++
Sbjct: 498 VCLENPHVIDKHQIWVGIVPKGPDGVFLSSAYDKRFSEECLSSLGKTIGNIARVVPHGLL 557
Query: 537 CFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR--GA 594
FF SY M++ + W D ++I + K VF+E + T +D Y + C + GA
Sbjct: 558 IFFPSYPVMEKSLEYWRDHDFARKIEELKPVFVEPRSKGGFTEVIDAYYEKIICPKSNGA 617
Query: 595 VFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
F +V RGK +EG+DF GR VI+ G+PF
Sbjct: 618 AFMAVCRGKASEGLDFADMNGRGVIITGLPF 648
>gi|71994594|ref|NP_001022900.1| Protein Y50D7A.11 [Caenorhabditis elegans]
gi|351059426|emb|CCD73798.1| Protein Y50D7A.11 [Caenorhabditis elegans]
Length = 197
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 129/184 (70%), Gaps = 4/184 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + V FPYD +YPEQ YM E+K+ALDA+GH LLEMP+GTGKT++LLSL+ +Y+
Sbjct: 1 MQLDIDGLKVLFPYDYVYPEQVLYMKEVKKALDARGHGLLEMPSGTGKTVSLLSLVLAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG-PAAKILAIGLSSRKNLCVNS 119
+S P+ KL+YC+RT+ E+EK + E+K+L++Y + G P AKI + +S+RKNLCVN
Sbjct: 61 ISYPDKLDKLVYCSRTIPEIEKCVEEMKVLYDYWEKETGQPVAKI-TVAMSARKNLCVNE 119
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
V A ++VD+AC+K TAS R AE+P +E C++FEN+E A + + GV+ L
Sbjct: 120 PVAALRFGNTVDSACQKLTASSARQKRAEDPTLEACDYFENFE--AKSVPMQNGVWNLVK 177
Query: 180 LRAF 183
+ F
Sbjct: 178 ICEF 181
>gi|76156607|gb|AAX27782.2| SJCHGC01374 protein [Schistosoma japonicum]
Length = 226
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 127/189 (67%), Gaps = 5/189 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY YM+ELKR LDAKGH +LEMP+GTGKT++LLSLI +Y+
Sbjct: 1 MKINIDGLLVYFPYEYIYPEQYHYMIELKRTLDAKGHGVLEMPSGTGKTVSLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY---QTRHLGPAAKILAIGLSSRKNLCV 117
++P K +YC+RTV E+EK + ELK+L Y +T G +L I LSSRKNLC+
Sbjct: 61 KARPGIVEKFVYCSRTVPELEKVIDELKVLDKYYADETNEKG--CGLLGIILSSRKNLCI 118
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
+ V A + +VD+AC + TAS+VR +PN+ C+++E ++ PG+Y++
Sbjct: 119 HRDVKHAGDGAAVDSACFRLTASFVRKNRIADPNVAYCKYYEEFDLNGRDNPFAPGIYSM 178
Query: 178 QDLRAFGKQ 186
D++A+ K
Sbjct: 179 ADIKAYAKN 187
>gi|340503511|gb|EGR30093.1| regulator of telomere elongation helicase 1, putative
[Ichthyophthirius multifiliis]
Length = 671
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 157/662 (23%), Positives = 299/662 (45%), Gaps = 90/662 (13%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----SLITSYV 60
++ + +YFPY YP+Q YM ++ ++L+ + LL+ PTGTGKT+ LL + + Y
Sbjct: 44 IDGIDIYFPY-RPYPQQIMYMSKVIQSLNQGNNSLLQSPTGTGKTLCLLCATIAWLKKYR 102
Query: 61 LSKPEN-----PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNL 115
EN P K++Y +RT ++++ + ELK QT + P +LA SR
Sbjct: 103 EQNQENIDNVPPKKIVYSSRTHSQIQQVVKELK-----QTIY-RPRITVLA----SRDQY 152
Query: 116 CVNSRVLAAENRDSVD----AACRKRTASWVRALAAENPNIETCEFFE-NYEKAASAAVL 170
C L E ++ D + C+K N +C+F++ N+E +
Sbjct: 153 C-----LKKEYQNLTDWTLISYCQKAI------------NEHSCKFYQKNHENLEE--IF 193
Query: 171 PPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESV 230
+ +++LR G++ G+CPYF +R + +++ Y Y+ D + A + E+ S+
Sbjct: 194 STDIMDIEELRQNGQKNGFCPYFHSRRVKDCVDIIFMPYNYIFDNQNASPFNIEL-TNSI 252
Query: 231 VVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE-----Y 285
++FDEAHNI + E+ S S+ + LE + + + I+ +K + R + E
Sbjct: 253 LIFDEAHNIAKIAEESTSFSITIKNLEAIETEIKLLREIIQSYKDPNTFRQKKESHKNKI 312
Query: 286 NRL--VEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGR 343
N+L ++ LR + D IL+ +P F L++ ++ ++
Sbjct: 313 NKLQEIDTQGLRSSNQDCDL----------ILQHILP--------FKKYLQKFIENIQKN 354
Query: 344 LETEN--VEKEGPVSF--VASITAHAGIDQKTLRFCYERLHSLMLT----LEITDTDEFL 395
E + KEG F + + T + + TL ++ ++ L+IT+ E++
Sbjct: 355 PENSETIISKEGRDIFQILENNTIPIQLQENTLDTYFQENNNTFQQKKEGLKITNLQEYI 414
Query: 396 H--IQTICDFATLVGTYTRGFSIIIEPFDERM------PHIPDPVLQLSCHDASLAVKPV 447
+ I D +T + + + + + P + + C D S++ +
Sbjct: 415 KKLVMAIEDLSTTQNYGLDKWMLFLSKVQKLLCVEKVEPENEQSEIYMQCLDPSVSFSFI 474
Query: 448 -FDRFQSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
S+++TSGTL+P D + L P++ + + + + + +G + +
Sbjct: 475 KIKNPHSILLTSGTLAPFDSWELELKIPFPIILNNQHVIDNKKNLLAGICIKGPLEQELE 534
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS--GILKEIMQ 563
+ R + + G L+ + +P+GI+ F S S W + I+ ++ +
Sbjct: 535 FTYQNRQKNLILDDVGLTLLNLCKFIPNGILVIFNSSSSYWNCRKQWENGEHKIMNKLKE 594
Query: 564 HKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
HK +F E ++ E + NY +A +GA+ F++ RGKV+EGIDF R V + GV
Sbjct: 595 HKQLFFEPKNSYEMNSFMKNYTQAAKSKQGAILFAICRGKVSEGIDFYDELARAVFLIGV 654
Query: 624 PF 625
P+
Sbjct: 655 PY 656
>gi|322781255|gb|EFZ10173.1| hypothetical protein SINV_12884 [Solenopsis invicta]
Length = 884
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 170/678 (25%), Positives = 288/678 (42%), Gaps = 99/678 (14%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK- 63
+ D+ V FP+ YP Q YM ++ L H +LE PTGTGKT++LL S++L+K
Sbjct: 6 INDIVVNFPF-KPYPVQLEYMKKVIECLQNSQHGVLESPTGTGKTLSLLCSSLSWLLTKK 64
Query: 64 -----------------------------------PENP-------VKLIYCTRTVHEME 81
P+N K+IY +RT ++
Sbjct: 65 AQLQAQMIAGAIEKKDLGGHFFKHLTNGLEKAVGLPDNVQSFGWSMAKIIYASRTHSQLS 124
Query: 82 KTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
+ + ELK +T + A +L SR LC++ V N + C + S
Sbjct: 125 QAMHELK-----RTSYKHVATTVLG----SRDQLCIHPEVSKETNTFNKIHMCHSKVKS- 174
Query: 142 VRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
TC ++ N E V V ++DL G++ CPYFL + + Q
Sbjct: 175 -----------RTCFYYNNVEARKDDPVFKEEVLDIEDLVKLGQKHKCCPYFLTKELKQN 223
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
A++V Y YLLDPK ++Q +VV+ DEAHN++ VC EA S+ + +
Sbjct: 224 ADIVFMPYNYLLDPKTRRSQGIDLQN-TVVLLDEAHNVEKVCEEAASLQISSTDIAMCID 282
Query: 262 NLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPG 321
++ + Q++ + + +E N + A L A A+ S LK + G
Sbjct: 283 EVTSVMQDMAKNSDQQSFDFLSENNVQKDFTAEDLCLLKAMFLELEKAIDSIELKNSSEG 342
Query: 322 NIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKT---------L 372
N +L + V+ G+ E +EK + + T+ + +K L
Sbjct: 343 NTFPGGFIFELLEK-VELTHGK-EQIVIEKLEKIILYLTTTSTSPFARKGNALQKFSDLL 400
Query: 373 RFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPV 432
R + S+ E +HIQ + + + + ++M +
Sbjct: 401 RTVFNSGASIARHREKVKRCYKVHIQ--------IEEQKKNYKNDVWE-SKKMTKTDGKL 451
Query: 433 LQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
+ C ++ + ++ +SVV+TSGTLSP+ + L V +T+ +C
Sbjct: 452 ISYWCFSPGFGMEQMVEQGIRSVVLTSGTLSPLKSFISELGIPIAVQLENPHIVTKGQVC 511
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
+L++G D P+++ ++ R+DP + G+ + IVP G++ FF SY M +
Sbjct: 512 VGILSQGPDNHPLNSSYNTRNDPKYIASLGRTVYNFSCIVPHGLLIFFPSYPIMKKCRDE 571
Query: 552 WNDSGILKEIMQH---KLVFIETQDVVETTLALDNYRKACDCG-RGAVFFSVARGKVAEG 607
W + G+ +I + K F+ + + Y+K D +GAVF +V RGKV+EG
Sbjct: 572 WQNMGLWTQIAEQPNSKEGFVNVMN--------EYYQKIRDPSCKGAVFMAVCRGKVSEG 623
Query: 608 IDFDRHYGRLVIMFGVPF 625
+DF GR V++ G+PF
Sbjct: 624 LDFANANGRAVLIIGLPF 641
>gi|348533666|ref|XP_003454326.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Oreochromis niloticus]
Length = 1193
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 174/691 (25%), Positives = 294/691 (42%), Gaps = 120/691 (17%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV---- 60
L VTV FP+ + Y Q +YM ++ L K + +LE PTGTGKT+ LL ++
Sbjct: 6 LSGVTVNFPF-SPYECQKAYMNKVIECLQKKVNGVLESPTGTGKTLCLLCATLAWRENFK 64
Query: 61 -----------LSK---PENPV--------------------KLIYCTRTVHEMEKTLAE 86
L K P P+ K++Y +RT ++ + ++E
Sbjct: 65 GTISARKIAERLGKEMFPNTPLSSWGTAATDGDKPTYYTDVPKIVYASRTHSQLAQVISE 124
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
LK N R K+ +G SR+ LC+N V+ E+ CR + ++
Sbjct: 125 LK---NTSYR-----PKVCVLG--SREQLCINQEVMRQESNHVKVHMCRGKVST------ 168
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
+C ++ N E+ ++ L + ++DL FG +Q CPY+L+R + Q A+V+
Sbjct: 169 ------RSCVYYNNVEEKSTDRDLVNSILDVEDLVQFGTKQRVCPYYLSRSLKQQADVIF 222
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
Y YLLDPK + ++ +VV+FDEAHN++ C E+ S + + A + R+
Sbjct: 223 MPYNYLLDPKSRKAHNIDLNG-AVVIFDEAHNVEKTCEESTSFDLTPYDVASAINAVDRL 281
Query: 267 -NQEIERFKATDAGRLRAEYNRLVEGLAL--------RGNLPIADAWLSNPALPSD--IL 315
++ + D+ L GL L + L +A + + +PSD I
Sbjct: 282 LVEQAKEISHKDSVNEDVNVESLSSGLKLDLSTIAKIKQILLDLEAAIDSYEVPSDKGIT 341
Query: 316 KEAVPG----NIRRAEHFLH--------VLRRLVQYLRGRLETENVEKEGPVSFVASITA 363
K PG + H + L ++ YL G+ P F+ +
Sbjct: 342 K---PGIFIYEVLERAHLTYSNKTAVYEALEQISGYLAGQ----------PGIFLNTSGL 388
Query: 364 HAGIDQKTLRFCYE-----RLHSLMLTLEITDTDEF-LHIQTICDFATLVGTYTRGFSII 417
D L FC E R H + T+T F +HI V + +
Sbjct: 389 QKLSDIIQLVFCGEPSEKDRRHQME-----TNTAHFKVHIHR----DNSVHKKKQSVDVW 439
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPV 476
++ +I L C +++ + ++ + +++TSGTLSP+ + +
Sbjct: 440 ASSSSKKQGNI----LSYWCFSPGFSMQDLVNQGVRCIILTSGTLSPLSSFTSEMRIEFP 495
Query: 477 VSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIV 536
V + RD I ++ +G D +S+ FD R P + G + + +VP G++
Sbjct: 496 VRLENSHVIERDQIFVSIIAQGPDGAHLSSAFDRRFVPENMASLGNTVANLSRVVPHGLL 555
Query: 537 CFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGA 594
FF S+ M++ + W +G I K +F+E + +D Y + +G
Sbjct: 556 VFFPSFPLMEKTLEFWKANGHANRIENIKPMFVEPKGKGTFNDVIDGYYSKVNDPASKGG 615
Query: 595 VFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
FF+V RGK +EG+DF YGR VI+ G+PF
Sbjct: 616 SFFAVCRGKASEGLDFADTYGRGVIITGLPF 646
>gi|395529687|ref|XP_003766940.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Sarcophilus harrisii]
Length = 539
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 113/161 (70%)
Query: 156 EFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP 215
E + ++ +P G+Y L DL+AFG+Q+GWCPYFLAR+ + ANV+VYSY YLLDP
Sbjct: 144 EIEKEFDALGRQTPIPWGIYNLDDLKAFGRQKGWCPYFLARYSILHANVIVYSYHYLLDP 203
Query: 216 KVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKA 275
K+A ++SKE+ +++VVVFDEAHNIDNVCI++L ++ R+TL+ NL + + + + K
Sbjct: 204 KIADLVSKELARKAVVVFDEAHNIDNVCIDSLRGNLTRRTLDRCQSNLETLQRTVHKIKE 263
Query: 276 TDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILK 316
TD RLR EY+RLVEGL DA L+NP LP ++L+
Sbjct: 264 TDEKRLREEYHRLVEGLREASLARETDAHLANPVLPDEVLQ 304
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 102/147 (69%), Gaps = 7/147 (4%)
Query: 368 DQKTLRFCYERLHSLMLTLEIT-DTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMP 426
D+K LR Y RL + + +TD L + D +GF+IIIEPFDER P
Sbjct: 265 DEKRLREEYHRLVEGLREASLARETDAHLANPVLPD------EVLQGFTIIIEPFDERTP 318
Query: 427 HIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT 486
I +PVL SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+L
Sbjct: 319 TIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLA 378
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSD 513
R C+CPM++ RG+DQ+ +S+KF+ R D
Sbjct: 379 RVCLCPMIVGRGNDQVAISSKFETRED 405
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87
GH +LEMP+GTGKTI+LL+LI +Y + P KLIYC+RTV E+EK L
Sbjct: 101 GHGVLEMPSGTGKTISLLALIVAYQRAHPLEVTKLIYCSRTVPEIEKEFDAL 152
>gi|326428226|gb|EGD73796.1| hypothetical protein PTSG_05489 [Salpingoeca sp. ATCC 50818]
Length = 1032
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 177/702 (25%), Positives = 291/702 (41%), Gaps = 140/702 (19%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL--SLITSY 59
+ K+ V V FP+ N Y Q +YM L +AL+ + +LE PTGTGKT+ LL SL
Sbjct: 4 MLKIGGVWVSFPH-NPYDLQTAYMNSLIQALNEGKNAMLESPTGTGKTLCLLCASLAWQE 62
Query: 60 VLSK-----------------------------------------------PENPVK--- 69
+K P NP +
Sbjct: 63 QFTKALTAQAEEDAAKAKAKAMAAGLGGGQGPHQGWQASGTGYEQQHQQHQPGNPAQGFT 122
Query: 70 --------LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV 121
+IY TRT ++ +T+AELK +Y+ I +G SR+ LC+N V
Sbjct: 123 PQKPKAPRIIYATRTHSQIAQTIAELKRT-SYK-------PNICVLG--SREQLCINPEV 172
Query: 122 LAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLR 181
+ + CR + AS + C ++ K + G+ ++DL
Sbjct: 173 SRLDTNAAKTRTCRHKVAS------------QECSYYFQVPK-GKKDLADHGIADIEDLV 219
Query: 182 AFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
G+ CPY+LAR ++ A +V Y Y+L+ + +++ SVV+ DEAHNI++
Sbjct: 220 KIGRSASCCPYYLARDGLESAQLVFVPYNYILNSRTRRNQRIDVET-SVVILDEAHNIES 278
Query: 242 VCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDA---GRLRAEYNRLVEGLALRGNL 298
VC +A S + +T +L+ + E+ R DA G L A+ + + L L+
Sbjct: 279 VCEDASSFDL-------STTDLAAFSNELARLSTADAEVLGELTADDAKALHKLVLQIEE 331
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV------EKE 352
+ D L + ++R+ F+ R + L ET V +
Sbjct: 332 KL------------DALPVKIGAPMQRSGDFIF---RFFEGLNMTFETVQVILPKVEQAA 376
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDT----DEFLHIQTICDFATLVG 408
V + S H LR L+ E D ++ ++
Sbjct: 377 DAVGALKSSRCHLSKFADILR--------LLFGAETKDNLAMIRQYYYVNVSESKRQQQQ 428
Query: 409 TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVF-DRFQSVVITSGTLSPIDLY 467
G+++ + R + C +S A+K + D +SVV+TSGTLSP+D +
Sbjct: 429 QQQSGWAVAAPAGNPR-------TISFWCFTSSFAMKSLIQDGVRSVVLTSGTLSPLDTF 481
Query: 468 PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEM 527
L + +++ + VLT G ++ + RS P + G +V
Sbjct: 482 AAELMVDFPIRLENPHIISKKQVWAGVLTCGPRGHELNASYTTRSSPAYQADLGNAIVNF 541
Query: 528 VSIVPDGIVCFFVSYSYMDEIIATWNDS---GILKEIMQHKLVFIETQDVVETTLALDN- 583
+VP G++ FF SY +M + I W S I +I ++K +E Q+ E A++
Sbjct: 542 ARVVPKGLLVFFPSYGFMRQCIEGWQQSSGRSIWDQIAEYKKPVVEPQNKHEFVAAMEVF 601
Query: 584 YRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y++ + G+VFF+V RGKV+EG+DF GR VI+ G+P+
Sbjct: 602 YQQLKEPDAGSVFFAVCRGKVSEGLDFADENGRAVIITGLPY 643
>gi|401415594|ref|XP_003872292.1| putative helicase [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322488516|emb|CBZ23762.1| putative helicase [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 953
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 173/670 (25%), Positives = 281/670 (41%), Gaps = 106/670 (15%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
+ +TV FP+D YP Q +M + + L + LLE PTGTGKT+ LL ++ ++
Sbjct: 7 VNGITVSFPFDP-YPAQVEFMRSVVKCLQHGFNGLLESPTGTGKTLCLLCSTLGWLAARS 65
Query: 65 ENPV-----------------KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAI 107
+ V K++YC+RT ++ + + ELK Q +AI
Sbjct: 66 QGAVLRHPSDQDQKGRGKYSHKVVYCSRTHAQLAQVVRELKRTSYAQ-------CFTMAI 118
Query: 108 GLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKA-AS 166
L SR+++C+N V + + A C AL +E C FF + A A
Sbjct: 119 -LGSREHMCLNKEVTRLPSSQAQHAMCS--------ALRSE----RNCRFFRGLQSAGAG 165
Query: 167 AAVLPPG--VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKE 224
A++LPP V+ ++DL G + G+CPYF R + A+VV+ Y Y+LDP + + E
Sbjct: 166 ASLLPPACAVHDMEDLMREGSRSGFCPYFHERDAARDADVVLMPYNYILDPSLHKQLPFE 225
Query: 225 MQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ +++ DEAHN+ +V + ++ + A + SR A RL A+
Sbjct: 226 L-ANCILIVDEAHNLPSVLSSSGCQTLSPLDVTTAIHDCSR---------AIAMHRLTAK 275
Query: 285 YNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL 344
L E +A+ +A + L + E + + + R Y+ L
Sbjct: 276 KAELDEDVAVEEEQELASLKILLNRLEMCVYAEPMAEGTAASTPTQCAVVRDGSYMFAFL 335
Query: 345 ETENVEKEGPVSFVASITAHAGIDQKTLRFCYERL-HSLMLTLEITDTDEFLHIQTICDF 403
E + +E + +T+ +G+ T+ C L S + EFL C F
Sbjct: 336 EKAFITREVFGAQSDGVTSESGL-AGTMGKCVTLLADSERPATSMARVQEFL----TCVF 390
Query: 404 ATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCH---------------DASLAVKPVF 448
A FD M HI L H D + ++ V
Sbjct: 391 A----------------FD--MAHIDSTRFVLQQHLVAAKAARTLGFWELDNTRLMRQVV 432
Query: 449 DRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKF 508
SV++TSGTLSP+D + L V + D + VL RG ++ F
Sbjct: 433 SPLHSVLLTSGTLSPLDQFAAELGMEFQVRLKGNHVIQPDQVLGGVLCRGPSGEKLNGGF 492
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS-----------GI 557
RS G L + P G + FF SY+ M+ ++ W G+
Sbjct: 493 SFRSSVDYRVGLGMSLANIARNTPGGTLVFFPSYAAMNSVVDLWRAGSGRAGDTKTVWGM 552
Query: 558 LKEIMQHKLVFIETQDVVETTLALDNYRKACDCG--RGAVFFSVARGKVAEGIDFDRHYG 615
L E+ K +F+E + + + ++K D RGA+ +V RGK++EGIDF ++G
Sbjct: 553 LSEL---KPIFVEPNNTNDLPTIVQGFQKEVDTSPLRGAILLAVCRGKISEGIDFADNHG 609
Query: 616 RLVIMFGVPF 625
R V++ G+P+
Sbjct: 610 RCVLVAGIPY 619
>gi|194888991|ref|XP_001977003.1| GG18780 [Drosophila erecta]
gi|229891622|sp|B3NSW1.1|RTEL1_DROER RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|190648652|gb|EDV45930.1| GG18780 [Drosophila erecta]
Length = 985
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 158/677 (23%), Positives = 302/677 (44%), Gaps = 97/677 (14%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENP 67
+ V+FP++ YP Q +YM ++ + L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YPVQRAYMEKVIQCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQSEH 67
Query: 68 V---------------------------------------KLIYCTRTVHEMEKTLAELK 88
K+IY +RT ++ + + ELK
Sbjct: 68 QQQMVKIEKADFSGLAGGATGGELSDLGKTMGRANNWGVPKVIYASRTHSQLTQAMRELK 127
Query: 89 LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAE 148
+T + A + ++ L SR LC++ V+ + + C+ R S
Sbjct: 128 -----RTAY----ANMRSVVLGSRDQLCIHPEVMREQGNSNKTNMCKLRVHS-------- 170
Query: 149 NPNIETCEFFENYEKAASAAVL-PPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVY 207
+TC F E L P + ++DL G++ CPYF +R +V A++
Sbjct: 171 ----KTCTFQMRVESRKDHPDLRGPSIMDIEDLVKVGQRLKICPYFASRELVPQADITFM 226
Query: 208 SYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRIN 267
Y YLLDPK E+ ++V+ DEAHNI+ +C E+ SV ++ + A +++ I
Sbjct: 227 PYNYLLDPKARKANKIEL-GNTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIM 285
Query: 268 QEIERFKATD-AGRLRAEYN--------RLVEGLALRGNLPIADAWLSNPALPSDILKEA 318
Q ++ D AG ++ ++ L + + D P+ ++ E
Sbjct: 286 QVFASGESQDMAGDEPKDFTLDDLTLLKEMLLELEKAIDAVVVDNAAEGTTFPASLMYEL 345
Query: 319 VP------GNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASI-TAHAGIDQKT 371
+ GN+ + +L +LVQYL + ++ K G + ++ + T Q
Sbjct: 346 LGKANFTYGNV---ATIVSLLDKLVQYLLVASQQMSIRKGGTFTMLSDLLTIVFANKQDV 402
Query: 372 LRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDP 431
+ Y S + +++ ++ + Q A G + +I ++ I
Sbjct: 403 MSKVYA---SFKVHVQMEESKQGHGKQ---QGAKQQGGWLGKGTIAAASGTSKVAKI--- 453
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
+ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 454 -INFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 510
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + + R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 511 QVYVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKC 570
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GAVF +V RGKV+EG+
Sbjct: 571 VDAWQASGLWADISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGL 630
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+PF
Sbjct: 631 DFADRNGRAVIITGLPF 647
>gi|324503421|gb|ADY41490.1| Regulator of telomere elongation helicase 1 [Ascaris suum]
Length = 993
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 172/705 (24%), Positives = 293/705 (41%), Gaps = 140/705 (19%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL--------- 53
++ ++V FPY+ Y Q YM ++ L + LE PTGTGKT+ LL
Sbjct: 4 LQIGKISVEFPYEP-YDCQLLYMEKVIETLKRSFNAALESPTGTGKTLCLLCATIAFTKE 62
Query: 54 --SLITSYVLSKPENPV------KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKIL 105
S I+ + P+ K+IY +RT ++ + + EL T+
Sbjct: 63 MKSRISVDATANPQGTTPGSLYPKIIYASRTHSQLAQVVRELNKTVYKDTK--------- 113
Query: 106 AIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAA 165
L+SR LC+N V+ +N + CR + C ++ Y++ +
Sbjct: 114 TATLASRDFLCINETVMKEQNSTTKALMCRNLVKN------------RKCRYYNEYDRQS 161
Query: 166 SAAV-----LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGI 220
++ V ++D+ GK+ CP++ R +V A++++ Y Y++DP++ +
Sbjct: 162 KDSLEIIYNCNGMVPDIEDIVNIGKKHSVCPFYRTRSLVDEADLLLMPYNYVIDPRLRRM 221
Query: 221 ISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI-----NQEIE---R 272
+ K ++V+FDEAHN++ +C EA+SVS + L G R + N E E +
Sbjct: 222 HDVGL-KGNIVIFDEAHNLEAICEEAVSVSFSSKELSGCIRETKTVLEMIMNDEEEVRTK 280
Query: 273 FKATDA-----------GRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPG 321
TDA + E N + LA+ +L + D LK+ G
Sbjct: 281 MDNTDAPFGASDDVVDRSEVHLEKNDVARLLAMLQSLEVV----------VDGLKKNGQG 330
Query: 322 NIR--RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGID---QKTLRFCY 376
R E +H +++V+ L+ AGI + L
Sbjct: 331 GRRLNMVEGKVHAGQKMVELLK----------------------TAGIRRDFRDELSLLV 368
Query: 377 ERLHSLMLTLEITD-----TDEFLHIQTICDFATLVGTYTRGFSIIIEPF---------- 421
+R+ ++ +D D H+Q F ++V Y G+ + PF
Sbjct: 369 DRIGQYLVQKGSSDQGTVFADTGAHLQHFASFVSVV--YADGYDPLA-PFHEPKNSKAKR 425
Query: 422 --DERMPHIPDPVLQLS-------------CHDASLAVKPVFDR-FQSVVITSGTLSPID 465
D+R+ ++ QL C +A++ + R +S+++TSGTLSP+
Sbjct: 426 FNDQRLTNLMAEKFQLYVTEEGTLVTLNYWCFSPVVAMRYMHARGVRSIIVTSGTLSPLK 485
Query: 466 LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLV 525
+ +L ++ + D + + + L + F RS G ++
Sbjct: 486 AFIEVLGVDMRITLENDHVASSDQVIGACVYGDDNGLAICGSFKNRSSDAYLLGVGSVIR 545
Query: 526 EMVSIVPDGIVCFFVSYSYMDEIIATWN-----DSGILKEIMQHKLVFIETQDVVETTLA 580
+ SIVP+GI+ FF SY M+ I W S E+ Q K +F+E + VE L
Sbjct: 546 RICSIVPEGILVFFSSYVLMNTCIRKWKAHNVTGSSPWSEMAQSKKLFVEPKSKVELKLI 605
Query: 581 LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L +R++ GA F+V R KV+EGIDF R V++ GVPF
Sbjct: 606 LAQFRESVHQDNGAALFAVCRAKVSEGIDFSDSESRAVVVVGVPF 650
>gi|340374870|ref|XP_003385960.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Amphimedon queenslandica]
Length = 717
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 171/675 (25%), Positives = 293/675 (43%), Gaps = 113/675 (16%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY-- 59
I +E+V V FP+ YP Q YM ++ +AL + +LE PTGTGKT++LL S+
Sbjct: 9 IHVIENVPVSFPF-TPYPCQIEYMEKVIKALQNNTNAILESPTGTGKTLSLLCATLSWRQ 67
Query: 60 -----------VLSKPENPV----KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKI 104
+ S + P+ K+IY +RT ++ + + ELK + P I
Sbjct: 68 QLPAPVISEWDLQSDSKGPLGGRPKIIYASRTHSQLSQAIHELK------STSYRPKVSI 121
Query: 105 LAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKA 164
+ SR LC+NS V++ ++ AC + A+ ++C ++ N +
Sbjct: 122 IG----SRDQLCINSEVMSKDSNAEKVHACHAKVAA------------KSCTYYNNVD-- 163
Query: 165 ASAAVLPPG-VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISK 223
+P G + +++L G + CPY+LAR M A+++ Y Y+LD + +
Sbjct: 164 LKRLSVPEGFIPDIEELVGMGTKNKMCPYYLAREMKTEADLIFMPYNYILDLRTRLVHGI 223
Query: 224 EMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFK--ATDAGRL 281
+ +VV+ DEAH N+ R+ ++ F+ +TD
Sbjct: 224 NITN-TVVILDEAH------------------------NIERVCEDSSSFELTSTDIAHC 258
Query: 282 RAEYNRLVEGLALRGNLPIADAWLSN-PALPSDILKEAVPGNIRRAEHFLHVLRRLVQYL 340
+ + L L+ A +LS + LK+ N++ E FL + L +
Sbjct: 259 IKDIDYL-----LKNKYEEAKEYLSELDTQTQNTLKDL--ANLK--ELFLCLEDSLDKI- 308
Query: 341 RGRLETENVEKEGPVSFVASITAHAGIDQKT----LRFCYERLHSLM----LTLEITDTD 392
L++EN E P S++ AGI +T + C + + SL L T+
Sbjct: 309 --ELKSENNECVKPGSYIFEFLGKAGITTETHVVLIDQCSQAIASLTSDQSLHRTSTNLQ 366
Query: 393 EFLHIQTICDFATLVGTYTR------GFSIIIEPFDERMPHIPDPV------------LQ 434
+FL I + TR + + I+ + + D L
Sbjct: 367 KFLEAIKIVFSGSCPAGMTRERMASLHYRVYIKSDNNKRKKKSDVWTTDNNTDDTCRRLC 426
Query: 435 LSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM 493
C + A+ + + +SV++TSGTLSP++ + L VS + +D +
Sbjct: 427 YWCFNPGYAMTELVRQGVRSVILTSGTLSPLESFTSELQLEFPVSLQGSHVIGKDQVWVG 486
Query: 494 VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN 553
V+++G D + +++ + R P + G LV I+PDG++ FF SY M+ ++ W
Sbjct: 487 VVSKGPDNVHLNSSYQTRFTPAYMDSLGNTLVNFFRIIPDGVLVFFPSYVVMETLVTHWK 546
Query: 554 D-SGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR--GAVFFSVARGKVAEGIDF 610
+ S I + QHK +F E + E + Y + G FF V RGKV+EG+DF
Sbjct: 547 EHSNIFMRMEQHKQIFKEPKFKNEFNSVMSAYYEKIGSADKVGGAFFGVCRGKVSEGLDF 606
Query: 611 DRHYGRLVIMFGVPF 625
+ GR VI+ G+P+
Sbjct: 607 ADNNGRAVIITGLPY 621
>gi|334312296|ref|XP_001375942.2| PREDICTED: regulator of telomere elongation helicase 1 [Monodelphis
domestica]
Length = 1605
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 168/686 (24%), Positives = 292/686 (42%), Gaps = 108/686 (15%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
+ VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 ISGVTVDFPFQP-YKCQEDYMTKVLECLQKKVNGVLESPTGTGKTLCLLCTTLAWREHFK 64
Query: 54 SLITSYVLSK--------PENPV--------------------KLIYCTRTVHEMEKTLA 85
IT+ +++ P+ P+ K+IY +RT ++ + ++
Sbjct: 65 DTITARKIAERMQGVELFPDRPMSSWGNAATDGDTTAYYTDIPKIIYASRTHSQLTQVIS 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC+N V E+ CRK+ ++
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCINPEVRKIESNHIQIHVCRKKVST----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ ++ L + ++DL G + CPY+L+R + Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSTEKELVTSILDIEDLVKSGNKHRVCPYYLSRTLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ VC E+ S + L L
Sbjct: 223 FMPYNYLLDSKTRRAHNIDL-KGTVVIFDEAHNVEKVCEESASFDLTPFDL---ASGLDA 278
Query: 266 INQEI-ERFKATDAGRLRAEYNRLVEGLALRGNLP-IADAWLSNPALPSDILKEAVPGN- 322
INQ + E+ K + A++N ++ L L IA + L S I +PGN
Sbjct: 279 INQVLEEQTKLLQQNEIHAQFNMELDNSGLNMELEDIAKVKIILLKLESVIDAIELPGNN 338
Query: 323 --------------------IRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASIT 362
+ L L +++Q++ GR G + A +
Sbjct: 339 TGMTKPGSYIFDLFAEAHITFQTKSSLLESLEQIIQFMAGRT--------GIFNNTAGLQ 390
Query: 363 AHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFD 422
I Q + F E ++ ++ + D + T+ P
Sbjct: 391 KLVDIIQ--IVFSIEPPEGAANLMQGHTVSKYYKVHIHLDSSNR--KKTQRTDAWTAPVA 446
Query: 423 ERMPHIPDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSF 481
++ I L C ++ + + +++++TSGTL+PI + + V
Sbjct: 447 KKQGKI----LSYWCFSPGFSMHELIQQGVRTIILTSGTLAPISSFSMEMQIPFHVCLEN 502
Query: 482 KMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVS 541
+ + I ++ +G D + +S+ +D R + GK + + +VP G++ FF S
Sbjct: 503 PHVIDQHQIWVGIVPKGPDGVLLSSAYDKRFSDECLSSLGKTIGNIARVVPHGLLVFFPS 562
Query: 542 YSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSV 599
Y M++ + W D +++ + K +F+E + T +D Y + C GA F +V
Sbjct: 563 YPVMEKSLEYWRDHDFARKMEELKAIFVEPRSKGGFTEVIDAYYEKIVCPKSNGATFMAV 622
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPF 625
RGK +EG+DF GR VI+ G+PF
Sbjct: 623 CRGKASEGLDFADMNGRGVIITGLPF 648
>gi|356547406|ref|XP_003542103.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Glycine max]
Length = 1001
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 171/675 (25%), Positives = 289/675 (42%), Gaps = 115/675 (17%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL--------- 53
+K+ + V FPY+ Y Q YM ++ ++L K + LLE PTGTGKT+ LL
Sbjct: 4 YKIRGIDVDFPYE-AYESQLVYMDKVIQSLQEKCNALLESPTGTGKTLCLLCATLAWRKS 62
Query: 54 --SLITSYVL-----SKPENPVK-----------LIYCTRTVHEMEKTLAELKLLHNYQT 95
S T + S+ +N V ++Y +RT ++ + + ELK +Y+
Sbjct: 63 LGSFTTGVSMQADDKSEGKNDVSSSQSESSRFSTIVYASRTHSQIRQVIQELKRT-SYRP 121
Query: 96 RHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAA---CRKRTASWVRALAAENPNI 152
+ + L SR+ LC++ V + +A CR+R
Sbjct: 122 K---------MVVLGSREQLCIHDEVKLLRGKTQTNACRLLCRRRGK------------- 159
Query: 153 ETCEFFENY-EKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQY 211
C F+ E L ++DL G++ G CPY+L++ + +F ++V Y Y
Sbjct: 160 RHCNHFKKVPEYMKDNPQLGEEPVDIEDLVNIGRRFGPCPYYLSKELHKFVDIVFAPYNY 219
Query: 212 LLDPKVAGIISKEMQ---KESVVVFDEAHNIDNVCIEALSVSVRRQTLEGA-TRNLSRIN 267
L+D K +Q S+++FDEAHN++++C +A S + L + S I+
Sbjct: 220 LIDRGY----RKSLQLSWSNSILIFDEAHNLESICADAASFDLPSWLLTACISEAESCID 275
Query: 268 QEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPAL----PSDILKEAVPGNI 323
IER ++ + ++ L L+ IA+ + + L P + E + ++
Sbjct: 276 LSIERRDKSNDKSQNPDDFAILRALLLKLEKRIAEVPIESKELGYTKPGPYIYELL-ADL 334
Query: 324 RRAEHFLHVLRRLVQYLRGRLETENVEKE-GPV---SFVASITAHAGIDQKTLRFCYERL 379
LR +V LE N +K G V + I D +T Y R+
Sbjct: 335 NITHKTASKLRDIVAVASTLLEEHNQQKSTGTVCRLDRIGEILDMVFRDGRTAHAKYYRV 394
Query: 380 HSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHD 439
H + + G ++G L C +
Sbjct: 395 H-------------------LREVEAWSGNGSKGKV--------------SRTLSWWCFN 421
Query: 440 ASLAVKPVFDRF--QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTR 497
+A++ F ++ +S+++TSGTLSP++ + + L + +T + I VL
Sbjct: 422 PGIAMED-FPKYGVRSIILTSGTLSPMESFAQELKLDFPIRLENPHVITANQIWAGVLPV 480
Query: 498 GSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW----- 552
G ++ + R P + G +V + IVPDG++ FF SY +D+IIA W
Sbjct: 481 GPSGRTFNSSYRTRDSPEYKQELGNAIVNLARIVPDGLLVFFPSYYLLDQIIACWKSSNE 540
Query: 553 NDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAEGIDF 610
N + I I +HK IE +D L++ +Y + GA+FF+V RGKV+EG+DF
Sbjct: 541 NSTSIWDRICKHKKPVIEPRDSSSFPLSIKDYMTTLNDTSASGAIFFAVCRGKVSEGLDF 600
Query: 611 DRHYGRLVIMFGVPF 625
H GR V++ G+PF
Sbjct: 601 ADHAGRAVVITGLPF 615
>gi|399950025|gb|AFP65681.1| DNA repair helicase component of transcription factor b [Chroomonas
mesostigmatica CCMP1168]
Length = 759
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 143/660 (21%), Positives = 270/660 (40%), Gaps = 47/660 (7%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY- 59
M F ++++ VYFPY ++PEQ YM LK+ D K H + +P G G + +S SY
Sbjct: 1 MQFYVQNLCVYFPYKIVFPEQIQYMYILKKIFDKKKHGITGIPPGMGFCLTTISFFISYN 60
Query: 60 VLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILA---IGLSSRKNLC 116
SK + KLIYC R +E+E +A+ ++ + T + I+ + L + LC
Sbjct: 61 FFSKKKK--KLIYCLRRENEIECAIAQSEMFLSQFTVYSLEKDFIIKPSIMALYDKTKLC 118
Query: 117 VNSRVLAAENRDSVDAACRKRTASWVRALAAEN--------------PNIETCEFFENYE 162
+N + D V+ C + + + E N C FF NY
Sbjct: 119 LNPIIKNDSILDEVEDFCHSLLSPYFFSKKKETFFPIEKKKETGIITNNESKCFFFTNYI 178
Query: 163 KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV-YSYQYLLDPKVAGII 221
+ G++T+ LR FG ++ +C +FL++ + +VV+ + YQ + +
Sbjct: 179 -HKRKKIFFKGIWTIFKLRNFGIKKNFCSFFLSKDIFVRCDVVISHIYQIFFSETFSSL- 236
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRL 281
+K++ S ++FD +++++ SV++ + R + + + + +
Sbjct: 237 NKKLTNCSFLIFDNIFDLESLNSLFFSVNIDPLVINDCQRGIFLLKKNF--YWSQKISIK 294
Query: 282 RAEYNRLVEGL-----ALRGNLPIADAWLS---------NPALPSDILKEAVPGNIRRAE 327
+ +N L N+ W + N K I+R
Sbjct: 295 KKNFNFFFIELFDSDSLFSDNIKKVVFWKNFFNKNKKRLNFFFNFSQQKNKKRRRIQRIF 354
Query: 328 HFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTL---RFCYERLHSLML 384
H L + ++V + + L +K P+ FV I + ++ L +L
Sbjct: 355 HNLETIEQIVFFFKEILTKTIFQKWDPIEFVNCFLKKFFIYETSITSINVLVNFLSNLFC 414
Query: 385 TLEITDTDEFLHIQTICDFATLVG----TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDA 440
L + + I +F L+ TY + F I + + P + +P L++ C +
Sbjct: 415 LLGFFNFRKMNGFSKILEFLKLIWINSETYNQNFIIFFSLENHKFPLLLEPCLEIICTET 474
Query: 441 SLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
L K F+ F SV+I S LS + +++ P + K ++ + +
Sbjct: 475 CLLFKSFFENFSSVIIISNNLSNLPFLFFIIDCKPKIFGKIKNFFEKNFLFSVFFNIKIS 534
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
L + Y L +++ +P+GIVC F S +++E + WN L +
Sbjct: 535 NLLNKMDKIKKKKENQNNKYSIFLNKIIENIPEGIVCIFPSKFHIEETLEEWNKEKFLNK 594
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIM 620
I + +F E D++E D Y+ CD G A+F S+ G +++ + H+ R ++
Sbjct: 595 IFKKTKIFFENADILENLFFFDQYKLCCDFGIKALFISIYGGFLSKA-NLSLHFSRAFLL 653
>gi|111493941|gb|AAI05579.1| Rtel1 protein [Mus musculus]
Length = 1203
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 173/681 (25%), Positives = 290/681 (42%), Gaps = 98/681 (14%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVETKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEYNRLVEGLALRGNLPIAD-AWLSNPALPSDILKEAV--PG 321
INQ + E+ + T G L+ E+ +V+ + N+ + D A L L + +AV PG
Sbjct: 279 INQVLEEQARVTQQGELQQEF--IVDTSSSGLNMELEDIAKLKMILLRLEEAIDAVQLPG 336
Query: 322 NIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHS 381
+ R + L + +T+ E + + G+ T L
Sbjct: 337 DDRGVTKPGSYIFELFAEAQITFQTKGCILESLDQIIQHLAGRTGVSTNT-----AGLQK 391
Query: 382 LMLTLEITDTDEFLHIQTICDFATLVG-TYTRGFSIIIEP-------------FDERMPH 427
LM ++I F +LVG + + + I P +
Sbjct: 392 LMDIIQIV----FSADPPEGSPGSLVGLGISHSYKVHIHPETSHRRAAKRSDAWSTTASR 447
Query: 428 IPDPVLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT 486
VL C S +++ V +++++TSGTL+P+ + + V +
Sbjct: 448 KQGKVLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIID 507
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
++ + ++ RG D + +S+ +D R + GK L + +VP G++ FF SY M+
Sbjct: 508 KNQLWVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVME 567
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKV 604
+ + W G+ +++ K +F+E ++ + +D Y + A GA +V RGK
Sbjct: 568 KSLEFWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATLLAVCRGKA 627
Query: 605 AEGIDFDRHYGRLVIMFGVPF 625
+EG+D GR VI+ G+P+
Sbjct: 628 SEGLDSSDMNGRGVIVTGLPY 648
>gi|24639946|ref|NP_572254.1| CG4078, isoform A [Drosophila melanogaster]
gi|442615242|ref|NP_001259262.1| CG4078, isoform B [Drosophila melanogaster]
gi|75027961|sp|Q9W484.1|RTEL1_DROME RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|7290625|gb|AAF46074.1| CG4078, isoform A [Drosophila melanogaster]
gi|60677863|gb|AAX33438.1| RE31401p [Drosophila melanogaster]
gi|220952186|gb|ACL88636.1| CG4078-PA [synthetic construct]
gi|440216460|gb|AGB95108.1| CG4078, isoform B [Drosophila melanogaster]
Length = 985
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 158/679 (23%), Positives = 300/679 (44%), Gaps = 101/679 (14%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENP 67
+ V+FP++ YP Q +YM ++ L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQSEH 67
Query: 68 VK---------------------------------------LIYCTRTVHEMEKTLAELK 88
K +IY +RT ++ + + ELK
Sbjct: 68 QKQMVKMEKADFSGLGGGAPGGDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAMRELK 127
Query: 89 LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAE 148
+T + A + ++ L SR LC++ V+ + + C+ R S
Sbjct: 128 -----RTAY----ANMRSVVLGSRDQLCIHPEVMREQGNSNKTNMCKLRVHS-------- 170
Query: 149 NPNIETCEFFENYEKAASAAVL-PPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVY 207
+TC F E L P + ++DL G++ CPYF +R +V A++
Sbjct: 171 ----KTCSFQMRVESRKDHPDLRGPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFM 226
Query: 208 SYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRIN 267
Y YLLDPK E+ ++V+ DEAHNI+ +C E+ SV ++ + A +++ I
Sbjct: 227 PYNYLLDPKARKANKIEL-GNTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIM 285
Query: 268 QEIERFKATD-AGRLRAEYN--------RLVEGLALRGNLPIADAWLSNPALPSDILKEA 318
Q ++ D AG ++ ++ L + + D + P+ ++ E
Sbjct: 286 QVFASGESQDMAGDEPKDFTLDDLTLLKEMLLELEKAIDAIVVDNAVDGTTFPASMMYEL 345
Query: 319 VP------GNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA---SITAHAGIDQ 369
+ GN+ + +L +LVQYL + ++ K G + ++ +I D
Sbjct: 346 LGKANFTYGNV---ATIVSLLDKLVQYLLVASQQMSIRKGGTFTLLSDLLTIVFANKEDV 402
Query: 370 KTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIP 429
+ + ++H L+ +E A G + +I ++ I
Sbjct: 403 MSKVYASFKVHVLV--------EESKQGHGKQQGAKQQGGWLGKGTIAAATGLSKVAKI- 453
Query: 430 DPVLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LT 486
+ C + ++ + + + +SV++TSGTL+P L P + V++ + +
Sbjct: 454 ---INFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVD 508
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
+ + ++ G D+ + + + R +P + G+ ++ + IVPDG++ FF SY ++
Sbjct: 509 QSQVYVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLN 568
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAE 606
+ + W SG+ +I K +F+E + + T ++ + +A +GAVF +V RGKV+E
Sbjct: 569 KCVDAWQASGLWADISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSE 628
Query: 607 GIDFDRHYGRLVIMFGVPF 625
G+DF GR VI+ G+PF
Sbjct: 629 GLDFADRNGRAVIITGLPF 647
>gi|401412199|ref|XP_003885547.1| hypothetical protein NCLIV_059440 [Neospora caninum Liverpool]
gi|325119966|emb|CBZ55519.1| hypothetical protein NCLIV_059440 [Neospora caninum Liverpool]
Length = 1080
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 120/342 (35%), Positives = 176/342 (51%), Gaps = 58/342 (16%)
Query: 305 LSNPALPSD-ILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITA 363
L++P LP D +L++AVPG+IR+AEHF+ ++RR+V YL+ ++ ++ EGP+SF+
Sbjct: 618 LASPLLPEDALLEQAVPGSIRKAEHFIALMRRIVSYLKSYIKIYELKSEGPLSFLHMFEK 677
Query: 364 HAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDE 423
ID L+F Y+RL SL TL+IT+ + + + + DF TLV TY GF +I +P+ E
Sbjct: 678 ETHIDASLLKFFYDRLKSLFNTLQITEVESYAPLTLVADFCTLVATYCEGFILICDPYPE 737
Query: 424 RMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVIT-SGTLSPIDLYPRLLNFHPVVSRSFK 482
+ + DP+LQLSC DASLA++PV RFQ + + P L P+L
Sbjct: 738 AV-GLYDPLLQLSCLDASLAMQPVLKRFQLLSASFVFAWRPRPLTPQLPQ---------S 787
Query: 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSY 542
+ LT I P+ L Y KLL +V + ++ F ++
Sbjct: 788 LILTSGTISPLEL------------------------YPKLLNFVVGLFCACVLSVFNAW 823
Query: 543 ----SYMDEIIATWNDSGILK----EIMQHKLVFIETQDVVETTLALDNYRKACDC---- 590
++ DS L+ H++V DV L L + DC
Sbjct: 824 PLWRAFTLSRAPERQDSQFLRGGILTARHHRVV----PDVSGPQLHL-----SVDCRPRL 874
Query: 591 -GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
+ F GKVAEGIDFDRH+GR V++FGVPFQYTLS+
Sbjct: 875 RSDPSDFQVRIPGKVAEGIDFDRHFGRCVVLFGVPFQYTLSR 916
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 103/188 (54%), Gaps = 47/188 (25%)
Query: 155 CEFFENYEKAASAAVLPPGVYTLQDLRA---------FGKQQGWCPYFLARHMVQFANVV 205
C ++EN ++ + P GVYT+++L+ ++ +CPYFLAR ++ ANVV
Sbjct: 303 CAWYENLDRYFAPQFFPAGVYTIEELKVASANWRHPLLDRKLPFCPYFLARRLLHIANVV 362
Query: 206 VYSYQYLLDPKVA-------------------------------------GIISKEMQKE 228
V +YQY+LDPKV+ G ++E+Q E
Sbjct: 363 VLNYQYILDPKVSQAALLTPLPDGISSSHTAGAQSRSTYTNPYQNRGLGRGPGTEEVQYE 422
Query: 229 -SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNR 287
SVVVFDEAHNIDNVCIEALSV++ R +E A RNLS++ ++IE K DA RLR EY
Sbjct: 423 GSVVVFDEAHNIDNVCIEALSVNINRSVMEAALRNLSQLAEKIEEVKKEDAERLREEYEN 482
Query: 288 LVEGLALR 295
LV GL R
Sbjct: 483 LVRGLKRR 490
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
++F++++VTVYFPYD IYPEQY+Y+ LK+ LDAKGH +LEMPTGTGKT+ALLSL+TSY
Sbjct: 2 VVFQIDEVTVYFPYDFIYPEQYAYIRALKQTLDAKGHAVLEMPTGTGKTVALLSLLTSYQ 61
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHL 98
L+ P K++YCTRTV EMEK L ELK + +Y+ +
Sbjct: 62 LTHPRL-GKILYCTRTVPEMEKALLELKGVIDYRIEEI 98
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 93 YQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA--LAAENP 150
Y + + IL +GLS+R+N+C+N V +R+ +D ACR+ TA WVR L + NP
Sbjct: 171 YIGKDMASDGYILGVGLSARRNMCINPAVYNQPDREKIDEACRQLTAPWVRQSHLTSYNP 230
>gi|330843781|ref|XP_003293824.1| hypothetical protein DICPUDRAFT_5561 [Dictyostelium purpureum]
gi|325075810|gb|EGC29655.1| hypothetical protein DICPUDRAFT_5561 [Dictyostelium purpureum]
Length = 617
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 158/657 (24%), Positives = 283/657 (43%), Gaps = 92/657 (14%)
Query: 9 TVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS------ 62
TV FP+ YP Q S M + LD K +CLLE PTGTGKT+ LL +
Sbjct: 3 TVKFPF-KPYPSQASMMSRILSGLDNKENCLLESPTGTGKTLTLLCSALEWHREDLKKSN 61
Query: 63 --------------------KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA 102
+P + +C+RT H K L E Y+
Sbjct: 62 NNNNGSDSDDTDSEDPVENFRPNPSPTIFFCSRT-HSQIKQLTEELAKTPYR-------P 113
Query: 103 KILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE 162
+L +G SR + C+N + + C+K ++P C +++
Sbjct: 114 NMLVMG--SRDHYCINKELKDVPRKKE---RCKK---------IIKDPG---CRYYKKEF 156
Query: 163 KAASAAVLPPG----VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVA 218
+S + G V+ ++DL+ G++ CP+F+++ M+ +++V Y YL+DP +
Sbjct: 157 VLSSISTFRKGGAKQVWDIEDLKKAGQEHSECPFFVSKDMLPSSDLVFCPYNYLIDPSIR 216
Query: 219 GIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDA 278
+ K+ K S+V+FDEAHNI++ ++A S TL+ N+ ++ ++I R
Sbjct: 217 STL-KDKVKNSIVIFDEAHNIEDALMDASSF---ESTLDELYENVFQVLKQI-RMNPKII 271
Query: 279 GRLRAEYNRLVEGLALRGNLPIAD---AWL---SNPALPSDILKEAVPGNIRRAEHFLHV 332
L E + + PI D AW+ S P D K + + + + L +
Sbjct: 272 KNLSPEKEHAINIIH-----PIMDELVAWIREKSESLKPIDFEKHS---RVWKGKEILDI 323
Query: 333 LRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTD 392
L+ + G E+ E V ++ T + L L +E
Sbjct: 324 LQGI-----GLSESNYFEFSSSVKALSDETDDKQNKKDKLGKPSAILEEFSKVIEFI--- 375
Query: 393 EFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIP-DPVLQLSCHDASLAVKPVFDRF 451
F + + D+ ++ T ++ F ++ + ++ + +A + +
Sbjct: 376 -FKNANWVDDYVLVLQKQT----VLTNSFVKKQQSSKWNLIVSIWALSPRIAFSSLNSKT 430
Query: 452 QSVVITSGTLSPIDLYP-RLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM 510
S+++TSGTLSP+ +P L + P+ + +S ++ L+ G
Sbjct: 431 HSIILTSGTLSPLYSFPFELASPFPISAEMGNLSDIKNRAWIGTLSHGVRNEKFLCTHGN 490
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE 570
+ G+ ++E + I+P G++CFF SY ++++I W +G+L +I + K F E
Sbjct: 491 TDSFSFQDSLGETIIEHIKIIPSGVLCFFPSYGFLEKITDRWASTGLLDKINELKPAFAE 550
Query: 571 TQDVVETTLALDNYRKACDCG--RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+++ + L YR+ +GA+ F+V RGKV+EGIDF Y R VI+ G+P+
Sbjct: 551 PKNIKDFNETLIGYRQTVQSNPKKGAILFAVCRGKVSEGIDFSDEYARGVIVVGIPY 607
>gi|327284022|ref|XP_003226738.1| PREDICTED: regulator of telomere elongation helicase 1-like [Anolis
carolinensis]
Length = 1142
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 160/669 (23%), Positives = 284/669 (42%), Gaps = 97/669 (14%)
Query: 4 KLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY---- 59
KL +TV FP++ Y Q YM + L + + +LE PTGTGKT+ LL ++
Sbjct: 5 KLNGITVDFPFEP-YKCQEEYMSRVLECLQKQVNGILESPTGTGKTLCLLCSTLAWQEHF 63
Query: 60 -----------------------------VLSKPENPV------KLIYCTRTVHEMEKTL 84
++ E P K+IY +RT ++ + +
Sbjct: 64 KDAISAQKIAQRLGGAELFADRPMSFWGNAVTDAELPAYYTDIPKIIYASRTHSQLTQVI 123
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
ELK N R K+ +G SR+ LC++ V E+ CR + +
Sbjct: 124 GELK---NTVYR-----PKVCVLG--SREQLCIHPEVKKQESNHVQIHMCRMKVTT---- 169
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
TC F+ N E+ ++ L + ++DL G + CPY+L+R + Q A++
Sbjct: 170 --------RTCHFYNNVEEKSTEKELINPILDVEDLVKSGNKHRVCPYYLSRTLKQQADI 221
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
+ Y YLLD K + ++ K +VV+ DEAHN++ C E S + L A +S
Sbjct: 222 IFMPYNYLLDSKSRRAHNLDL-KGTVVILDEAHNVEKQCEELASFDLTPYDLASAMDAIS 280
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ +E + K +E+N +E ++ N+ + D I
Sbjct: 281 IVLEE--QAKKVQQNEFNSEFN--MERVSSELNMEVED--------------------IA 316
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
+ + L +L + + + + K+G S++ + A A I +T E L +
Sbjct: 317 KIKKILLLLEDAIDAVELAPDGSGITKDG--SYIFDLFAKAQITFQTYSSILESLEQIQQ 374
Query: 385 TLE-----ITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHD 439
L T+T I + + + ++ + VL C
Sbjct: 375 YLAGRTGIFTNTAGLHKCTDIIQVHIHPDSSNQRKKQRTDLWNSSVTKKQGKVLSYWCFS 434
Query: 440 ASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRG 498
++ + + +++++TSGTLSP+ + + + + + + +L +G
Sbjct: 435 PGYSMHELVRQGVRTIILTSGTLSPLSSFTMEMQIPFPICLENPHVIDKHQVWVGILPKG 494
Query: 499 SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGIL 558
D +S+ ++ R P + GK + +V I+P G++ FF SY MD+ + W D +
Sbjct: 495 PDGGLLSSTYEKRFSPECLSSLGKTIGNLVKIIPHGLLVFFPSYPVMDKSLEYWKDHRFV 554
Query: 559 KEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGR 616
++I K +F+E ++ T +D Y + C +GAVF +V RGK +EG+DF GR
Sbjct: 555 EKIEAVKPIFVEPRNKGTFTEVIDAYYEKIVCPKAKGAVFLAVCRGKASEGLDFADTNGR 614
Query: 617 LVIMFGVPF 625
VI+ G+PF
Sbjct: 615 GVIITGLPF 623
>gi|157120352|ref|XP_001653621.1| regulator of telomere elongation helicase 1 rtel1 [Aedes aegypti]
gi|122117342|sp|Q16X92.1|RTEL1_AEDAE RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|108875002|gb|EAT39227.1| AAEL008960-PA [Aedes aegypti]
Length = 1010
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 159/704 (22%), Positives = 306/704 (43%), Gaps = 131/704 (18%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+++ +TV FP++ Y Q YM + L + +LE PTGTGKT++LL ++VL
Sbjct: 4 YQINGITVNFPFEP-YQVQRDYMSRVIECLQNSTNGVLESPTGTGKTLSLLCSSLAWVLH 62
Query: 63 K----------------------------------------------PENPV----KLIY 72
K PE K++Y
Sbjct: 63 KKAQVQANMRTNITDLKEFEMVQRKKLGGDGGSGMEELLDKLHDGCGPEGAKWGVPKIVY 122
Query: 73 CTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDA 132
+RT ++ + + E+K T + + + + L SR LC++ V E +
Sbjct: 123 ASRTHSQLTQVMQEMK-----NTSY----SFMKGVILGSRDQLCIHPEVSKEEGNSTKTN 173
Query: 133 ACRKRTASWVRALAAENPNIETCEFFENYEKAAS-AAVLPPGVYTLQDLRAFGKQQGWCP 191
C+ + S TC F+ E V+ + ++DL G + CP
Sbjct: 174 LCKAKVQS------------RTCSFYSRVESCKERPEVVSNVIMDIEDLVKVGTKVRACP 221
Query: 192 YFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSV 251
+FL++ +++ A+++ Y YLLDPK + E+ ++++ DEAHN++ +C E+ S+ +
Sbjct: 222 FFLSKELIESADILFMPYNYLLDPKARKANNLEISN-TIIILDEAHNVEKMCEESASMQI 280
Query: 252 RRQTLEGATRNLSRI-------------NQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
R + +++ I ++ + F D L+ +L + + ++
Sbjct: 281 RSTDIALCIDDVTSIMKVMDHSVAIPEDDETKKDFTIDDLALLKEMLLQLEKTV---DSI 337
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFL--HVLRRLVQYLRGRLETEN-VEKEGPV 355
P+ + N + I + NI+ + + +L ++QY+ E N V + G +
Sbjct: 338 PVMFSQGGNTFPGTYIFEIFEKANIKEGNYHIIAQLLENIIQYIATITEKNNFVRRGGGL 397
Query: 356 SFVAS----ITAHAGIDQK-TLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY 410
+A I A +G + + ++ CY ++H +EI + +
Sbjct: 398 QILAEALSIIFAGSGPEYRASIDKCY-KVH-----IEIEEQKK----------------- 434
Query: 411 TRGFSIIIEPFDERMPHIPD-----PVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPI 464
TRG + + +P V+ C + ++ + R +S+++TSGTL+P+
Sbjct: 435 TRGNVKQADGWTATKQLVPSVKANAKVVSFWCFNPGFGMRQLLGRNARSIILTSGTLAPL 494
Query: 465 DLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLL 524
L+ V + +C ++ +G D+ +++ + R +P + G+ +
Sbjct: 495 KPLISELDIPIAVRLENPHIIDGSQVCVKIVGQGPDKESLNSSYGNRDNPKYISSLGRTI 554
Query: 525 VEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE--TQDVVETTLALD 582
+ I+P G++ FF SY +++ W ++GI +I + K +F+E +D T++ +
Sbjct: 555 LSFCPIIPGGLLVFFPSYPLLNKCQEAWQETGIWAQISRTKPIFVEPRGKDQFLNTMS-E 613
Query: 583 NYRKACDC-GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y+K D G+GAVF +V RGKV+EG+DF GR VI+ G+PF
Sbjct: 614 YYQKINDPDGKGAVFMAVCRGKVSEGLDFADMNGRAVIITGLPF 657
>gi|363741498|ref|XP_417435.3| PREDICTED: regulator of telomere elongation helicase 1 [Gallus
gallus]
Length = 1220
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 167/679 (24%), Positives = 291/679 (42%), Gaps = 118/679 (17%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q +YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LRGVTVDFPF-QPYECQETYMAKVLECLQTKVNGILESPTGTGKTLCLLCSTLAWREHFK 64
Query: 54 SLITSYVLSK--------PENPV--------------------KLIYCTRTVHEMEKTLA 85
I++ +++ P+ P+ K+IY +RT ++ + +
Sbjct: 65 DTISARKIAQRMNGVELFPDRPMSSWGNAATDGDIPTYYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
ELK N R KI +G SR+ LC+N V E+ CRK+ +
Sbjct: 125 ELK---NTVYR-----PKICVLG--SREQLCINPEVKRQESNHMQIYMCRKKVMA----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
C F+ N E+ ++ L + ++DL G + CPY+L+R + Q A+++
Sbjct: 170 -------RACHFYNNVEEKSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + E+ K +VV+ DEAHN++ +C E+ S + L A ++
Sbjct: 223 FMPYNYLLDAKSRRAHNIEL-KGTVVILDEAHNVERLCEESSSFDLTAYDLASAIDVINL 281
Query: 266 INQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRR 325
+ + E+ K + AE+N +E ++ N+ + D I +
Sbjct: 282 VLE--EQAKVVQQNEVNAEFN--MESISSGLNMELED--------------------IAK 317
Query: 326 AEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLT 385
+ L L + + V K+G S++ + A A I +T E L ++
Sbjct: 318 IKKILLQLESAIDAVELPPNDSGVTKDG--SYIFELFAQAQITFQTKTSLLESLDQILQF 375
Query: 386 LEITDTDEFLHIQTICDFATLVGTY-------TRGFSIIIEPFDERMPHIPDPVLQLSCH 438
L T F++ + + ++ + + + +D L C
Sbjct: 376 LS-GRTGIFINTSGLHKLSDIIQVHIHLDNSNQKKKKERTDLWDSSAAKKQGKTLSYWCF 434
Query: 439 DASLAVKPVFDR-FQSVVITSGTLSPIDL--------YPRLL-NFHPVVSRSFKMSLTRD 488
++ + + +++++TSGTLSP+ +P LL N H + R +
Sbjct: 435 SPGYSMHELVRQGVRTIILTSGTLSPLSSFTMEMQIPFPVLLENPHVIDKRQLWVG---- 490
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
++ +G D +++ ++ R + GK + +V +VP G++ FF SY MD+
Sbjct: 491 -----IIPKGPDGTVLNSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKS 545
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAE 606
+ W + K I + K +F+E ++ +D Y + AC GA F +V RGK +E
Sbjct: 546 LEYWREHDFAKRIEEVKPMFVEPRNKGSFAEVMDAYYSKIACPKSNGAAFLAVCRGKASE 605
Query: 607 GIDFDRHYGRLVIMFGVPF 625
G+DF GR VI+ G+PF
Sbjct: 606 GLDFADMNGRGVIITGLPF 624
>gi|307197478|gb|EFN78712.1| Regulator of telomere elongation helicase 1 [Harpegnathos saltator]
Length = 963
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 173/696 (24%), Positives = 297/696 (42%), Gaps = 131/696 (18%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK- 63
+ D+ V FP+ Y Q YM ++ L H +LE PTGTGKT++LL S++L+K
Sbjct: 6 INDIIVSFPF-KPYSVQEEYMRKVIECLQNGQHGVLESPTGTGKTLSLLCSSLSWLLAKK 64
Query: 64 ---------------------------------PENPV-------KLIYCTRTVHEMEKT 83
P+NP K+IY +RT ++ +
Sbjct: 65 AQLQAQVIAIEKKDLGGNFFKHLTSGLEKAAGVPDNPQNFGWAMPKIIYASRTHSQLSQA 124
Query: 84 LAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR 143
+ ELK +H+ A L SR LC++ V + C + S
Sbjct: 125 MHELK---RTSYKHIPTAV------LGSRDQLCIHPEVSKEPTTFNKIHMCHSKVKS--- 172
Query: 144 ALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFAN 203
TC +F N E V ++DL G++ CPYFLA+ + Q A+
Sbjct: 173 ---------RTCFYFNNVEARKDDPTFRQEVLDIEDLVKAGQKHKCCPYFLAKELKQSAD 223
Query: 204 VVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
+V Y YLLDPK ++Q +VV+ DEAHN V + E A+ +
Sbjct: 224 IVFMPYNYLLDPKTRKSQGIDLQ-NTVVLLDEAHN------------VEKVCEEAASLQI 270
Query: 264 SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNI 323
S +TD E ++ ++ + + + +L+ + D E + I
Sbjct: 271 S----------STDVAMCIDEVTGVMRDIS--KEVELQNDFLTENNVQKDFTAEDL--CI 316
Query: 324 RRAEHFLHVLRRLVQY-LRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSL 382
+A FL + + + L+ R E + + P F+ + A + + E+L +
Sbjct: 317 LKA-MFLELEKAIDSIELKNRNEGDTL----PGGFIFELLEKAQLTHGKEQIVVEKLEKI 371
Query: 383 MLTLEITDTDEFLHI-QTICDFATLVGT-YTRGFSII-------------IEPFDERMPH 427
+L L T F + F+ L+ T + G S+ I+ +++ +
Sbjct: 372 ILYLTTISTSPFTRKGNALQKFSDLLKTAFNSGISVARHKEKVMRCYKVHIQIEEQKKNY 431
Query: 428 IPD-------------PVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNF 473
D ++ C ++ + ++ +SVV+TSGTLSP+ + L
Sbjct: 432 KNDVWESKKTTTKTDGKLISYWCFSPGFGMQQMVEQGVRSVVLTSGTLSPLKPFISELGI 491
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
V +T++ +C VL++G D P+++ ++ R+DP + G+ L IVP
Sbjct: 492 PIAVQLENPHIVTKEQVCVGVLSQGPDNHPLNSSYNTRNDPKYIASLGRTLYNFSCIVPH 551
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE--TQDVVETTLALDNYRKACD-- 589
G++ FF SY M + W + G+ +I + K +++E ++D + + Y+K D
Sbjct: 552 GLLIFFPSYPIMRKCRDEWQNMGLWTQISERKPIYVEPNSKDGFVNVMN-EYYQKIKDPL 610
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
C +GA+F +V RGKV+EG+DF GR V++ G+PF
Sbjct: 611 C-KGAIFMAVCRGKVSEGLDFANANGRAVLIIGLPF 645
>gi|194764312|ref|XP_001964274.1| GF20802 [Drosophila ananassae]
gi|229891621|sp|B3MSG8.1|RTEL1_DROAN RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|190619199|gb|EDV34723.1| GF20802 [Drosophila ananassae]
Length = 994
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 155/678 (22%), Positives = 302/678 (44%), Gaps = 99/678 (14%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK---- 63
+ V+FP++ YP Q +YM ++ + L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YPVQRAYMEKVIQCLKDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQSEH 67
Query: 64 ---------------------PE--------------NPVKLIYCTRTVHEMEKTLAELK 88
PE K+IY +RT ++ + + ELK
Sbjct: 68 QQQMIKLDKGADLLGGGAGGGPELSDLAKTMGKANNWGVPKVIYASRTHSQLTQAMRELK 127
Query: 89 LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAE 148
R ++ L SR LC++ V + C+ R S
Sbjct: 128 RTAYSNMR---------SVVLGSRDQLCIHPEVSREVGNSNKVNMCKLRVHS-------- 170
Query: 149 NPNIETCEFFENYE-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVY 207
+TC F E K P + ++DL G++ CPY+ ++ +V A++
Sbjct: 171 ----KTCTFQLRVESKKDHPDFRGPSIMDIEDLIKVGQKLKMCPYYASKELVPQADITFM 226
Query: 208 SYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRIN 267
Y YLLDPK E+ ++V+ DEAHNI+ +C E+ SV ++ + A +++ I
Sbjct: 227 PYNYLLDPKARKANKIEL-GNTIVILDEAHNIEKICEESASVQIKSSDVAIAIEDVTHIM 285
Query: 268 QEIERFKATD-AGRLRAEYN----RLVEGLALRGNLPIADAWLSNP----ALPSDILKEA 318
+ D AG ++ L++ + L I + NP P+ ++ E
Sbjct: 286 KAFASDSPQDMAGDEPKDFTIDDLMLLKEMLLDLEKAIDAVAVDNPIDGATYPASMIYEL 345
Query: 319 VP------GNIRRAEHFLHVLRRLVQYLR-GRLETENVEKEGPVSFVASITAHAGIDQKT 371
+ GN+ + +L +LVQYL + ++ K G + ++ + ++++
Sbjct: 346 LGKANFTYGNV---ATIVALLDKLVQYLMVASQQQMSLRKGGSFTLLSDLLTIVFANKES 402
Query: 372 LRFCYERLH-SLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPD 430
+ ++H S + +++ ++ + Q A G + S+ +
Sbjct: 403 V---MGKVHASFKVHVQVEESKQPQGKQAP---AKQAGGWLSKASLTNGSTGKVAK---- 452
Query: 431 PVLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTR 487
++ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 453 -IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQ 509
Query: 488 DCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDE 547
+ ++ G D+ P+ + + R +P + G+ ++ + +VPDG++ FF SY +++
Sbjct: 510 SQVYVKIIGTGPDRQPLISNYTNRDNPKYISSLGQTILNVSRLVPDGLLVFFPSYPMLNK 569
Query: 548 IIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEG 607
+ W SG+ +I K +F+E + + T ++ + +A +GA F +V RGKV+EG
Sbjct: 570 CVDAWQASGLWADIASKKPIFLEPRGKDQFTSTMEEFYQAIRDSKGACFMAVCRGKVSEG 629
Query: 608 IDFDRHYGRLVIMFGVPF 625
+DF GR VI+ G+PF
Sbjct: 630 LDFADRNGRAVIITGLPF 647
>gi|301094332|ref|XP_002896272.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262109667|gb|EEY67719.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 988
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 146/592 (24%), Positives = 260/592 (43%), Gaps = 59/592 (9%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGP-------AAKILAIGLSSRKNLCVNS 119
P ++ +C+RT ++ + + ELK N +L ++ L S++N+CVN
Sbjct: 229 PPQIFFCSRTHSQLAQVVDELK---NCPVSYLDSPEDSNTYTKQLQTCVLGSKRNMCVNR 285
Query: 120 RVLAAENRD--SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
+V NRD VD CR LA E +C FF +K P V+ +
Sbjct: 286 KV----NRDPSQVDEKCR---------LALEG---SSCSFFRKRKKTNDLKRSVPPVWDI 329
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+DL ++ C YF AR + AN+V Y YLLDP + G + + K++++V DEAH
Sbjct: 330 EDLVKLAQKHRECAYFHAREALDHANIVFAPYNYLLDPTIRGAVGITL-KDAIIVLDEAH 388
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAG-RLRAEYNRLVEGLALRG 296
N+++ C + SV V L + + + + + R K +A +L NR ++ +
Sbjct: 389 NVEDTCRSSASVEVTTDALAASIKAFTIVIKHGNRPKTYNALLKLLNGINRWLQSVDSNA 448
Query: 297 NLPI--------ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETEN 348
N + + W AL +L E E ++ + +Y G +
Sbjct: 449 NAILQPSGYEEKSKVWDGADALA--MLAEYSGLTKDNLEEMKENVQEVREYENGLGNSAE 506
Query: 349 VEKEGPVSFVASITAH-AGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLV 407
++ P A+ G + S+M ++ D I+ DF +V
Sbjct: 507 SSQQPPTQAAQDAAANPTGASVLLGALALATVESIMNVVDYMFRDRLKFIE---DFKLVV 563
Query: 408 ----GTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSP 463
T+ S P + + + C +A++A + + +SV++TSGTLSP
Sbjct: 564 IKSKSTWKENASFR-SPTKRNGGDEWELKMCIWCLNAAVAFSDIASQARSVILTSGTLSP 622
Query: 464 IDLYPRLLNFH-PVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGK 522
++ + L P+ + + R + + G + + + ++ + DP + G+
Sbjct: 623 MESFAGELGVDFPIRLEANHVVNMRKQVFIGAVMHGPGNVDLQSTYNNQQDPRYQDSMGQ 682
Query: 523 LLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVET-TLAL 581
LL++ +P GI+ FF SYS ++++ W + + EI Q K ++ E ++ + L
Sbjct: 683 LLLQYSQAIPGGILMFFPSYSLLNKLTTRWKKTKLWGEIEQFKAIYSEPRNAGKDFDRLL 742
Query: 582 DNYRKACDCGR--------GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
++Y++ C + GAVF +V RGKV+EGIDF R V+ G+PF
Sbjct: 743 EDYKETITCSKDGDDGNKTGAVFLAVYRGKVSEGIDFSNDNARAVLCVGIPF 794
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 3 FKLEDVTVYFPYDN-IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
F + V FP +P Q++ M ++ AL + H LLE PTG+GKT+ALL
Sbjct: 9 FMIMGYNVEFPQGKRPFPAQFAVMNKVLTALKTEQHALLESPTGSGKTLALL 60
>gi|156102350|ref|XP_001616868.1| DNA repair helicase [Plasmodium vivax Sal-1]
gi|148805742|gb|EDL47141.1| DNA repair helicase, putative [Plasmodium vivax]
Length = 1103
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 175/711 (24%), Positives = 302/711 (42%), Gaps = 127/711 (17%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--- 59
+ + DV VYFPY+ +Y QY+YML + AL K + +LE PTGTGKT+ LL SY
Sbjct: 21 YTINDVEVYFPYE-LYDCQYNYMLSVLNALKRKENAILESPTGTGKTLCLLCASISYLVD 79
Query: 60 VLSK------------------------------------PENPVKLIYCTRTVHEMEKT 83
VL K P + K+IY +RT ++++
Sbjct: 80 VLEKKGAFSENINITENKKNISFDFKENENSKGSPAKVAPPSDFPKIIYASRTHSQLKQV 139
Query: 84 LAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR 143
+ ELK ++ + K+L L SR LCV++ + ++ C++ +
Sbjct: 140 IKELKNVYFIKN---NEKYKLLTTILGSRDQLCVHN-INYNYKGTMLNNMCKRTRKNG-- 193
Query: 144 ALAAENPNIETCEFFENYE---KAASAAVLPPGVYTLQDL---RAFGKQQGWCPYFLARH 197
C + + K P V TL ++ + G+ +CP++ R
Sbjct: 194 ----------ECMYHNGLKYLYKLKHLFTTPMDVETLSEIGKGNSVGQNIHFCPFYATRE 243
Query: 198 MVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTL- 256
+ +V++ Y YL + I+ ++ S+++ DE HNI+NV EA+S +R L
Sbjct: 244 IQNECHVILLPYNYLFEESTRKILKLNLE-NSIIIIDEGHNIENVAEEAVSFKIRDSELN 302
Query: 257 ---EGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPS- 312
EG L+ ++ K D + + + E L ++ AWL N L
Sbjct: 303 LFLEGIKATLTVLD------KVNDVDKETKDKINVDELFILNRSITALIAWLDNERLEKN 356
Query: 313 ------------------DILKEAVPGNIRRA--EHFLHVLRRLVQYLR--------GRL 344
DI E NI + E+F +L +V+ L ++
Sbjct: 357 EKNKIKEKHKTYEGKQIFDIF-EKNNINITKDNFENFHTLLSSMVELLNRYINDFKITQM 415
Query: 345 ETENVEKEGPVSFVASITAHAGI-DQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICD- 402
+ +N+ + +S + ++ I +R C E L + E E + + D
Sbjct: 416 DVKNINR--YISTIDNVRKSFSILFSDIVRNCIEYFQ-LYINEEKVSYSECGDVNKVYDN 472
Query: 403 FATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVF-DRFQSVVITSGTL 461
T+ I+ + ++ M + L C A+ ++ + ++ SV++TSGTL
Sbjct: 473 MKKFAKNKTK---IVYDKYNYTMS----KNISLLCFSATASLCGIIKEKVNSVIVTSGTL 525
Query: 462 SPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM------VLTRGSDQLPVSTKFDMRSDPG 515
SPI+ + + L+ + SFK L D + +T ++Q+ +ST ++ RS+
Sbjct: 526 SPIEPFSKQLSGNYF---SFKHILENDHVIKSHQLFVGCMTHYNNQILLST-YENRSNDN 581
Query: 516 VARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV 575
+ G + +++ +P G++ FF SYS M E + W I ++I +K +F+E
Sbjct: 582 YVKALGNCIFDIIICIPYGVLIFFSSYSSMTETVNAWKKFKIFEKINSYKTIFVEPNKAS 641
Query: 576 ETTLALDNYRKACDCGR-GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
E LD Y R GA+ V RGK++EGIDF R VI+ G+P+
Sbjct: 642 ELKDILDQYENIIKKKRKGAILMGVCRGKISEGIDFKDDCCRGVIICGLPY 692
>gi|449486421|ref|XP_002193824.2| PREDICTED: regulator of telomere elongation helicase 1 [Taeniopygia
guttata]
Length = 1107
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 170/695 (24%), Positives = 291/695 (41%), Gaps = 125/695 (17%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L +TV FP+ YP Q +YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGITVDFPF-QPYPCQEAYMAKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWREHFK 64
Query: 54 SLITSYVLSK--------PENPV--------------------KLIYCTRTVHEMEKTLA 85
I++ +++ P+ PV K+IY +RT ++ + +
Sbjct: 65 DTISARKIAQRMNGVELFPDRPVSSWGTAATDGDVPTYYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
ELK N R KI +G SR+ LC+N V E+ CR + +
Sbjct: 125 ELK---NTVYR-----PKICVLG--SREQLCINPEVKRQESNHMQIYMCRMKVMA----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
C F+ N E+ ++ L + ++DL G + CPY+L+R + Q A+++
Sbjct: 170 -------RACHFYNNVEEKSTEKELIESIMDIEDLVKNGNKHRACPYYLSRSLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+ DEAHN++ +C E+ S + L A ++
Sbjct: 223 FMPYNYLLDSKSRKAHNLDL-KGTVVILDEAHNVEKLCEESSSFDLTPYDLASAMEAINV 281
Query: 266 INQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRR 325
+ +E + K + AE+N + L N+ + D I +
Sbjct: 282 VLEE--QAKVVQQNEINAEFNMELASSGL--NMELED--------------------IAK 317
Query: 326 AEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLT 385
+ L L + + V KEG S++ + A A I +T E L ++
Sbjct: 318 IKKILLQLESAIDAVELPANGNGVTKEG--SYIFDLFAEAQITLQTKSSLLESLEQILQF 375
Query: 386 LE----ITDTDEFLH-----IQTICDFATLVGTYTRGF------------SIIIEPFDER 424
L I LH IQT+ G T GF I ++ +++
Sbjct: 376 LSGRTGIFVNTSGLHKVSDIIQTVFSVDPPEGV-TTGFLPRQAISKYYKVHIHVDNSNQK 434
Query: 425 MPHIPD-----------PVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLN 472
D L C ++ + + +++++TSGTLSP+ + +
Sbjct: 435 KKQRTDLWNSSSSKRQGKTLSYWCFSPGYSMHELVRQGVRTIILTSGTLSPLSSFTMEMQ 494
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
V + + + ++ +G D +++ ++ R + GK + +V +VP
Sbjct: 495 IPFPVCLENPHVIDKHQLWVGIIPKGPDGTVLTSTYERRFSEDYLSSLGKTIGNLVRVVP 554
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR 592
G++ FF SY MD+ + W + K I + K +F+E ++ + +D Y C +
Sbjct: 555 HGMLVFFPSYPVMDKSLEYWREHDFAKRIEEVKPMFVEPRNKGSFSEVIDAYYDKVTCPK 614
Query: 593 --GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA F +V RGK +EG+DF GR VI+ G+PF
Sbjct: 615 SNGAAFLAVCRGKASEGLDFADINGRGVIITGLPF 649
>gi|395829361|ref|XP_003787828.1| PREDICTED: regulator of telomere elongation helicase 1 [Otolemur
garnettii]
Length = 1303
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 175/700 (25%), Positives = 291/700 (41%), Gaps = 136/700 (19%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY----- 59
L VTV FP+ Y Q YM ++ L + + +LE PTGTGKT+ LL ++
Sbjct: 6 LNGVTVDFPF-RPYRCQQEYMTKVLECLQKRVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 60 --------------------VLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
LS N P+ K+IY +RT ++ + ++
Sbjct: 65 DSVSARKIAERVQGELFLDRALSSWGNAAIAGGDPIVCYTDIPKIIYASRTHSQLTQVIS 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHMQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R + Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELATPILDIEDLVKSGSKHRVCPYYLSRSLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNVDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEY---------NRLVEGLA-LRGNLPIADAWLSNPALPSDI 314
I+Q + E+ G LR E+ N +E +A L+ L + + LP D
Sbjct: 279 IDQVLEEQAMVAQQGELRLEFSADSSSSGLNMELEDIAKLKTILLRLEGAIDAVELPGDD 338
Query: 315 LKEAVPGN------------IRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASIT 362
PG+ + L L +++Q+L GR T
Sbjct: 339 SGITKPGSYIFELFAEAQITFQTKGCILDSLDQIIQHLAGRTRV--------------FT 384
Query: 363 AHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYT-RGFSIIIEP- 420
AG+ ++L ++ + D E ++ VG T + + + I P
Sbjct: 385 NTAGL---------QKLADIIQIVFSADMSEV-------GPSSAVGLGTLQSYKVHIHPD 428
Query: 421 ------------FDERMPHIPDPVLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLY 467
+ P P VL C +++ V S+++TSGTL+P+ +
Sbjct: 429 TGCQRTAPRSDSWGTTAPRKPGKVLSYWCFSPGHSMRELVRQGVHSLILTSGTLAPVSSF 488
Query: 468 PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEM 527
+ + + + I V+ +G D +S+ FD R + GK L +
Sbjct: 489 ALEMQIPFPICLENPHIIEQHQIWVGVIPKGPDGAQLSSAFDKRFSEECLSSLGKTLGNI 548
Query: 528 VSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK- 586
+VP G++ FF SY M++ +A W + +++ K +F+E + + +D Y K
Sbjct: 549 ARVVPHGLLVFFPSYPVMEKSLAFWRTRDLARKVEALKPLFVEPRSKGSFSEVIDAYYKQ 608
Query: 587 -ACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 609 VASPGSSGATFLAVCRGKASEGLDFSDMNGRGVIITGLPY 648
>gi|89887299|gb|ABD78309.1| regulator of telomere length splice variant isoform 4 [Bos taurus]
Length = 1121
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 168/695 (24%), Positives = 291/695 (41%), Gaps = 128/695 (18%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L+ VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LKGVTVDFPF-QPYKCQEEYMSKVLECLQEKVNGILESPTGTGKTLCLLCSTLAWREHLR 64
Query: 54 -------------------SLITSYVLSKPENPV--------KLIYCTRTVHEMEKTLAE 86
+ S+ + PE V K+IY +RT ++ + ++E
Sbjct: 65 DAVSARRIAERASGELFPDRTLASWGNAIPEGDVPACYTDIPKIIYASRTHSQLTQVISE 124
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
L+ +Y+ R L SR+ LC++ V E+ CR++ AS
Sbjct: 125 LRNT-SYRPR---------VCVLGSREQLCIHPEVKKQESNHMQVHLCRRKVAS------ 168
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 169 ------RSCHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIF 222
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS-------VSVRRQTLEGA 259
Y YLLD K ++ K +VV+FDEAHN++ +C EA S V+ ++
Sbjct: 223 MPYNYLLDAKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDLTPHDVASELDVIDRV 281
Query: 260 TRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA-LRGNLPIADAWLSNPALPSDILKEA 318
+++ Q+ E A R+ N E LA L+ L + + LP D
Sbjct: 282 LEERTKVAQQAELHPEFSADSARSGLNLEPEDLAKLKMILLRLEGAIDAVELPGDNSGVT 341
Query: 319 VPGN------------IRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAG 366
PG+ + L L +L+Q+L GR T AG
Sbjct: 342 KPGSYIFELFAEAQITFQTKGCILDSLDQLIQHLAGR--------------AGLFTNTAG 387
Query: 367 IDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII-------- 418
+ ++L ++ + D+ E D +VG ++ + + I
Sbjct: 388 L---------QKLVDIIQIVFSVDSAE-------GDPGPMVGLASQSYKVHIHLDAGHRR 431
Query: 419 -----EPFDERMPHIPDPVLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLN 472
+ ++ P VL C +++ V +++++TSGTL+P+ + +
Sbjct: 432 TAQRSDVWNTTAARKPGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTLAPMASFSLEMQ 491
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
V + + I V+ +G D +S+ FD R + GK+L + +VP
Sbjct: 492 IPFPVCLENPHVINQHQIWVGVIPKGPDGAQLSSAFDRRFSDECLSSLGKVLSNISRVVP 551
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDC 590
G++ FF SY M++ + W +++ K +F+E + + ++ + R A
Sbjct: 552 HGLLVFFPSYPVMEKSLEFWRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPE 611
Query: 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA+F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 612 SSGAIFLAVCRGKASEGLDFADVNGRGVIVTGLPY 646
>gi|384253151|gb|EIE26626.1| DNA repair helicase [Coccomyxa subellipsoidea C-169]
Length = 812
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 170/677 (25%), Positives = 281/677 (41%), Gaps = 118/677 (17%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL--------S 54
+ + + V FP++ Y Q +YM + AL + LLE PTGTGKT+ LL S
Sbjct: 4 YSIRGIEVQFPHE-AYECQVTYMERVITALQEGKNALLESPTGTGKTLCLLCATLAWQES 62
Query: 55 LITSYVLSKPENPVK---------------------LIYCTRTVHEMEKTLAELKLLHNY 93
L V K N + +IY +RT ++ +TL
Sbjct: 63 LKQGKVTKKMHNHISHTKKSFGLTDLRSGDLSATPTIIYASRTHSQLAQTL--------- 113
Query: 94 QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIE 153
R P A IL SR+ +C+N V +++ ACR +S
Sbjct: 114 -WRWCRPRAAILG----SRQQMCLNPGVKRLPG-GAMNQACRAHVSS------------R 155
Query: 154 TCEFFENYEKAASAAVLPPGV----YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
TC + Y K S + P +++L G G CP++L+R M A +V Y
Sbjct: 156 TCSW---YNKVESWTRMHPDANGEALDIEELVRLGSSGGPCPFYLSRDMASTAQIVFMPY 212
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQE 269
YL+D K+ G I +V+VFDEAHN++ VC +A S + L A +++ + E
Sbjct: 213 NYLVDAKIRGGIKMLSWDNAVLVFDEAHNVEGVCSDAASFDLTGALLGTALQDV-QAAVE 271
Query: 270 IERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSN--PALPSDILKEAVPGNIRRAE 327
+ K R +L++ L + G L LS A+ S G + E
Sbjct: 272 VALLK-------RDGEAQLIQDLRMLGAL------LSKLEGAIASLAASAGNNGYTAKGE 318
Query: 328 HFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLE 387
+L ++ E + E A + + A +Q R+ + L
Sbjct: 319 FLFELLAKIGLNTDNHFYMERLLDE-----AADLLSGAAAEQGR-RWAPQFLQ------- 365
Query: 388 ITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPD---PVLQLSCHDASLAV 444
DE + C + ++G++I + + H P L C + +A+
Sbjct: 366 ---IDELFLLTFYCSKSVFA---SQGYAICCLFWKSKWAHGCGQEVPTLSYWCFEPGVAM 419
Query: 445 KPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP 503
+ + + +++TSGTL+P+D + + L+ V+ + + V+ G +
Sbjct: 420 AALCALKVRCILLTSGTLAPLDSFAQELSLDFPVTLENPHVVNTSQVWVGVVPVGPKGVV 479
Query: 504 VSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN-DSG------ 556
+++ + R+ P + G L IVPDG++ FF SY+ ++ + W +SG
Sbjct: 480 LNSSYATRTSPAYMEDLGLALANWARIVPDGLLVFFASYTVLEACLRHWKANSGDQRGGV 539
Query: 557 ------ILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAEGI 608
+ I++ K IE + E A D+YR RGA+FF+V RGKV+EG+
Sbjct: 540 LGFNGTLWDRIVRDKQAVIEPRRSEEFQAAADDYRAKLKDPSSRGAIFFAVCRGKVSEGL 599
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR V++ G+PF
Sbjct: 600 DFSDRAGRAVVITGLPF 616
>gi|328719600|ref|XP_001948918.2| PREDICTED: regulator of telomere elongation helicase 1 homolog
[Acyrthosiphon pisum]
Length = 946
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 155/684 (22%), Positives = 289/684 (42%), Gaps = 113/684 (16%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
F+ V V FPY+ Y Q Y+ ++ L + +LE PTGTGKT++LL +++L+
Sbjct: 4 FECRGVLVDFPYEP-YEVQKRYIEKVLECLQNGHNGVLESPTGTGKTLSLLCSSLAWLLA 62
Query: 63 K-----------------------------PEN-------PVKLIYCTRTVHEMEKTLAE 86
K P + P ++IY +RT ++ + + E
Sbjct: 63 KKAAIQANRMCPTESNLTISINTAAGVDKNPNSAWNGVIRPPRIIYGSRTHTQLNQVMKE 122
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
L+ NY +H+ K+ IG SR LC++ V A CR + ++
Sbjct: 123 LRRT-NY--KHM----KVGIIG--SRDQLCIHPEVTKEATSSVKIALCRAKVST------ 167
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
TC+F+ N E + A + G+ ++DL GK+ CPY+ +R + + +++
Sbjct: 168 ------RTCQFYNNVELKSKDAFVENGIADIEDLVNKGKKFNCCPYYGSRELQKDVDILF 221
Query: 207 YSYQYLLDPKVAGIISKEMQ-KESVVVFDEAHNIDN----------------VCIEALSV 249
Y Y++DP+ ++++Q + V++ DE HN++ +CI+A++
Sbjct: 222 TPYNYIIDPRTRK--AQDIQFSDDVIILDEGHNVEKMCEESCSVDISSTDIALCIDAVTD 279
Query: 250 SVRRQTLEGATR-NLSRINQEIERFKATDAGRLRA---EYNRLVEGLALRGNL---PIAD 302
+++ E T + I + F D L+A E ++++G+ L + +
Sbjct: 280 IMKQLYDEKNTEFSTEPIQLKPREFSDDDICVLKALFLEIEKVIDGIELTNSTNDKKMEG 339
Query: 303 AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASIT 362
+++ +DI P N+ + F+ L + Y+ A
Sbjct: 340 SYIFKLLQGADI----TPSNMSK---FISFLSSVTLYMSSSNSN------------APHQ 380
Query: 363 AHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFD 422
A K +F L SL + +TD++ + + + SI ++ F
Sbjct: 381 AKEACLYKFQQFLECVLQSLGTNGDPKNTDKYFRTYIQLEQSKY---KPKNDSIKLKEFK 437
Query: 423 ERMPHIPDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSF 481
+ L C ++ + DR + +++TSGTLSP+ + V
Sbjct: 438 K------GKTLNFWCFSPGFGMRDLLDRNVRCIILTSGTLSPLAATISEIGIPVKVQLQN 491
Query: 482 KMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVS 541
+ +C V+ G P+ + R++ + G+ LV I+P G + FF S
Sbjct: 492 AHVIKNSQVCVSVIKSGPSNKPLICNYTSRNNSDFLTSLGQTLVNFSRIIPGGTLVFFPS 551
Query: 542 YSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVAR 601
Y ++D+ + W I I ++K +F+E ++ ++ Y KA +GA+ +V R
Sbjct: 552 YPFLDQCVNHWQGCNIWASITKNKSIFVEPKNKDVLNSVIEEYYKAIQENKGAILLAVYR 611
Query: 602 GKVAEGIDFDRHYGRLVIMFGVPF 625
GKV+EG+DF R VI+ G+P+
Sbjct: 612 GKVSEGLDFSDWKARAVIILGLPY 635
>gi|89887293|gb|ABD78306.1| regulator of telomere length splice variant isoform 1 [Bos taurus]
Length = 1082
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 168/695 (24%), Positives = 291/695 (41%), Gaps = 128/695 (18%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L+ VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LKGVTVDFPF-QPYKCQEEYMSKVLECLQEKVNGILESPTGTGKTLCLLCSTLAWREHLR 64
Query: 54 -------------------SLITSYVLSKPENPV--------KLIYCTRTVHEMEKTLAE 86
+ S+ + PE V K+IY +RT ++ + ++E
Sbjct: 65 DAVSARRIAERASGELFPDRTLASWGNAIPEGDVPACYTDIPKIIYASRTHSQLTQVISE 124
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
L+ +Y+ R L SR+ LC++ V E+ CR++ AS
Sbjct: 125 LRNT-SYRPR---------VCVLGSREQLCIHPEVKKQESNHMQVHLCRRKVAS------ 168
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 169 ------RSCHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIF 222
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS-------VSVRRQTLEGA 259
Y YLLD K ++ K +VV+FDEAHN++ +C EA S V+ ++
Sbjct: 223 MPYNYLLDAKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDLTPHDVASELDVIDRV 281
Query: 260 TRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA-LRGNLPIADAWLSNPALPSDILKEA 318
+++ Q+ E A R+ N E LA L+ L + + LP D
Sbjct: 282 LEERTKVAQQAELHPEFSADSARSGLNLEPEDLAKLKMILLRLEGAIDAVELPGDNSGVT 341
Query: 319 VPGN------------IRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAG 366
PG+ + L L +L+Q+L GR T AG
Sbjct: 342 KPGSYIFELFAEAQITFQTKGCILDSLDQLIQHLAGR--------------AGLFTNTAG 387
Query: 367 IDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII-------- 418
+ ++L ++ + D+ E D +VG ++ + + I
Sbjct: 388 L---------QKLVDIIQIVFSVDSAE-------GDPGPMVGLASQSYKVHIHLDAGHRR 431
Query: 419 -----EPFDERMPHIPDPVLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLN 472
+ ++ P VL C +++ V +++++TSGTL+P+ + +
Sbjct: 432 TAQRSDVWNTTAARKPGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTLAPMASFSLEMQ 491
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
V + + I V+ +G D +S+ FD R + GK+L + +VP
Sbjct: 492 IPFPVCLENPHVINQHQIWVGVIPKGPDGAQLSSAFDRRFSDECLSSLGKVLSNISRVVP 551
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDC 590
G++ FF SY M++ + W +++ K +F+E + + ++ + R A
Sbjct: 552 HGLLVFFPSYPVMEKSLEFWRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPE 611
Query: 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA+F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 612 SSGAIFLAVCRGKASEGLDFADVNGRGVIVTGLPY 646
>gi|389585879|dbj|GAB68609.1| DNA repair helicase, partial [Plasmodium cynomolgi strain B]
Length = 1101
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 171/711 (24%), Positives = 301/711 (42%), Gaps = 127/711 (17%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL- 61
+ + DV VYFPY+ +Y QY+YML + AL K + +LE PTGTGKT+ LL SY++
Sbjct: 21 YTINDVEVYFPYE-LYDCQYNYMLSVLNALKKKENAILESPTGTGKTLCLLCASISYLVD 79
Query: 62 --------------------------------------SKPENPVKLIYCTRTVHEMEKT 83
+ P + K+IY +RT ++++
Sbjct: 80 VMEKKGAFSENINITENKKNISFDFKENENSKGSPAKVAPPSDFPKIIYASRTHSQLKQV 139
Query: 84 LAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR 143
+ ELK ++ + K+L L SR LCV++ + ++ C++ +
Sbjct: 140 IKELKNVYFIKN---NEKYKLLTTILGSRDQLCVHN-INYNYKGTMLNNMCKRTRKNG-- 193
Query: 144 ALAAENPNIETCEFFENYE---KAASAAVLPPGVYTLQDL---RAFGKQQGWCPYFLARH 197
C + + K P V TL ++ + G+ +CP++ R
Sbjct: 194 ----------ECMYHNGLKYLYKLKHLFTTPMDVETLSEIGKGNSVGQNIHFCPFYATRE 243
Query: 198 MVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTL- 256
+ +V++ Y YL + I+ ++ S+++ DE HNI+ V EA+S +R L
Sbjct: 244 IQNECHVILLPYNYLFEESTRKILKLNLE-NSIIIIDEGHNIETVAEEAVSFKIRDSELN 302
Query: 257 ---EGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPS- 312
EG L+ ++ K D + + + + L ++ +WL N L
Sbjct: 303 LFLEGIKATLTVLD------KVNDVDKETKDKVNVDQLFILNRSITALISWLDNERLEKN 356
Query: 313 ------------------DILKEAVPGNIRRA--EHFLHVLRRLVQYLR--------GRL 344
DI E NI + E+F +L +V+ L ++
Sbjct: 357 EKNKVKEKHKTYEGKQIFDIF-EKNNINITKDNFENFHTLLSSMVELLNRYINDFKISQM 415
Query: 345 ETENVEKEGPVSFVASITAHAGI-DQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICD- 402
+ +N+ K +S + +I I +R C E L + E E + + D
Sbjct: 416 DVKNITK--YISTIDNIRKSFSILFSDIVRNCIEYFQ-LYINEEKVAYSECGDVNKVYDN 472
Query: 403 FATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVF-DRFQSVVITSGTL 461
T+ I+ + ++ M + L C A+ ++ + ++ SV++TSGTL
Sbjct: 473 MKKFAKNKTK---IVYDKYNYTMS----KNISLLCFSATASLCGIIKEKVNSVIVTSGTL 525
Query: 462 SPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM------VLTRGSDQLPVSTKFDMRSDPG 515
SPI+ + + L+ + SFK L D + +T ++Q+ +ST ++ RS+
Sbjct: 526 SPIEPFSKQLSGNYF---SFKHILENDHVIKSHQLFVGCMTHYNNQILLST-YENRSNDN 581
Query: 516 VARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV 575
+ G + +++ +P G++ FF SYS M E + W I ++I +K +F+E
Sbjct: 582 YMKALGNCIFDLIICIPYGVLIFFSSYSSMTETVNAWKKFKIFEKINSYKTIFVEPNKAA 641
Query: 576 ETTLALDNYRKACDCGR-GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
E LD Y R GA+ V RGK++EGIDF R VI+ G+P+
Sbjct: 642 ELKDILDQYENIIKKKRKGAILMGVCRGKISEGIDFKDDCCRGVIICGLPY 692
>gi|229891626|sp|A4K436.1|RTEL1_BOVIN RecName: Full=Regulator of telomere elongation helicase 1
gi|89887297|gb|ABD78308.1| regulator of telomere length splice variant isoform 3 [Bos taurus]
Length = 1216
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 168/695 (24%), Positives = 291/695 (41%), Gaps = 128/695 (18%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L+ VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LKGVTVDFPF-QPYKCQEEYMSKVLECLQEKVNGILESPTGTGKTLCLLCSTLAWREHLR 64
Query: 54 -------------------SLITSYVLSKPENPV--------KLIYCTRTVHEMEKTLAE 86
+ S+ + PE V K+IY +RT ++ + ++E
Sbjct: 65 DAVSARRIAERASGELFPDRTLASWGNAIPEGDVPACYTDIPKIIYASRTHSQLTQVISE 124
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
L+ +Y+ R L SR+ LC++ V E+ CR++ AS
Sbjct: 125 LRNT-SYRPR---------VCVLGSREQLCIHPEVKKQESNHMQVHLCRRKVAS------ 168
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 169 ------RSCHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIF 222
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS-------VSVRRQTLEGA 259
Y YLLD K ++ K +VV+FDEAHN++ +C EA S V+ ++
Sbjct: 223 MPYNYLLDAKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDLTPHDVASELDVIDRV 281
Query: 260 TRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA-LRGNLPIADAWLSNPALPSDILKEA 318
+++ Q+ E A R+ N E LA L+ L + + LP D
Sbjct: 282 LEERTKVAQQAELHPEFSADSARSGLNLEPEDLAKLKMILLRLEGAIDAVELPGDNSGVT 341
Query: 319 VPGN------------IRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAG 366
PG+ + L L +L+Q+L GR T AG
Sbjct: 342 KPGSYIFELFAEAQITFQTKGCILDSLDQLIQHLAGR--------------AGLFTNTAG 387
Query: 367 IDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII-------- 418
+ ++L ++ + D+ E D +VG ++ + + I
Sbjct: 388 L---------QKLVDIIQIVFSVDSAE-------GDPGPMVGLASQSYKVHIHLDAGHRR 431
Query: 419 -----EPFDERMPHIPDPVLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLN 472
+ ++ P VL C +++ V +++++TSGTL+P+ + +
Sbjct: 432 TAQRSDVWNTTAARKPGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTLAPMASFSLEMQ 491
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
V + + I V+ +G D +S+ FD R + GK+L + +VP
Sbjct: 492 IPFPVCLENPHVINQHQIWVGVIPKGPDGAQLSSAFDRRFSDECLSSLGKVLSNISRVVP 551
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDC 590
G++ FF SY M++ + W +++ K +F+E + + ++ + R A
Sbjct: 552 HGLLVFFPSYPVMEKSLEFWRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPE 611
Query: 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA+F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 612 SSGAIFLAVCRGKASEGLDFADVNGRGVIVTGLPY 646
>gi|89887295|gb|ABD78307.1| regulator of telomere length splice variant isoform 2 [Bos taurus]
Length = 1237
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 168/695 (24%), Positives = 291/695 (41%), Gaps = 128/695 (18%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLS---------- 54
L+ VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LKGVTVDFPF-QPYKCQEEYMSKVLECLQEKVNGILESPTGTGKTLCLLCSTLAWREHLR 64
Query: 55 --------------------LITSYVLSKPENPV--------KLIYCTRTVHEMEKTLAE 86
+ S+ + PE V K+IY +RT ++ + ++E
Sbjct: 65 DAVSARRIAERASGELFPDRTLASWGNAIPEGDVPACYTDIPKIIYASRTHSQLTQVISE 124
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
L+ +Y+ R L SR+ LC++ V E+ CR++ AS
Sbjct: 125 LRNT-SYRPR---------VCVLGSREQLCIHPEVKKQESNHMQVHLCRRKVAS------ 168
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 169 ------RSCHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIF 222
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS-------VSVRRQTLEGA 259
Y YLLD K ++ K +VV+FDEAHN++ +C EA S V+ ++
Sbjct: 223 MPYNYLLDAKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDLTPHDVASELDVIDRV 281
Query: 260 TRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA-LRGNLPIADAWLSNPALPSDILKEA 318
+++ Q+ E A R+ N E LA L+ L + + LP D
Sbjct: 282 LEERTKVAQQAELHPEFSADSARSGLNLEPEDLAKLKMILLRLEGAIDAVELPGDNSGVT 341
Query: 319 VPGN------------IRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAG 366
PG+ + L L +L+Q+L GR T AG
Sbjct: 342 KPGSYIFELFAEAQITFQTKGCILDSLDQLIQHLAGR--------------AGLFTNTAG 387
Query: 367 IDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII-------- 418
+ ++L ++ + D+ E D +VG ++ + + I
Sbjct: 388 L---------QKLVDIIQIVFSVDSAEG-------DPGPMVGLASQSYKVHIHLDAGHRR 431
Query: 419 -----EPFDERMPHIPDPVLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLN 472
+ ++ P VL C +++ V +++++TSGTL+P+ + +
Sbjct: 432 TAQRSDVWNTTAARKPGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTLAPMASFSLEMQ 491
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
V + + I V+ +G D +S+ FD R + GK+L + +VP
Sbjct: 492 IPFPVCLENPHVINQHQIWVGVIPKGPDGAQLSSAFDRRFSDECLSSLGKVLSNISRVVP 551
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDC 590
G++ FF SY M++ + W +++ K +F+E + + ++ + R A
Sbjct: 552 HGLLVFFPSYPVMEKSLEFWRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPE 611
Query: 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA+F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 612 SSGAIFLAVCRGKASEGLDFADVNGRGVIVTGLPY 646
>gi|148225626|ref|NP_001091044.1| regulator of telomere elongation helicase 1 [Bos taurus]
gi|84105070|gb|ABC54575.1| regulator of telomere length helicase 1 [Bos taurus]
gi|84105072|gb|ABC54576.1| regulator of telomere length helicase 1 [Bos taurus]
Length = 1266
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 168/695 (24%), Positives = 291/695 (41%), Gaps = 128/695 (18%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLS---------- 54
L+ VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LKGVTVDFPF-QPYKCQEEYMSKVLECLQEKVNGILESPTGTGKTLCLLCSTLAWREHLR 64
Query: 55 --------------------LITSYVLSKPENPV--------KLIYCTRTVHEMEKTLAE 86
+ S+ + PE V K+IY +RT ++ + ++E
Sbjct: 65 DAVSARRIAERASGELFPDRTLASWGNAIPEGDVPACYTDIPKIIYASRTHSQLTQVISE 124
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
L+ +Y+ R L SR+ LC++ V E+ CR++ AS
Sbjct: 125 LRNT-SYRPR---------VCVLGSREQLCIHPEVKKQESNHMQVHLCRRKVAS------ 168
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 169 ------RSCHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIF 222
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS-------VSVRRQTLEGA 259
Y YLLD K ++ K +VV+FDEAHN++ +C EA S V+ ++
Sbjct: 223 MPYNYLLDAKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDLTPHDVASELDVIDRV 281
Query: 260 TRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA-LRGNLPIADAWLSNPALPSDILKEA 318
+++ Q+ E A R+ N E LA L+ L + + LP D
Sbjct: 282 LEERTKVAQQAELHPEFSADSARSGLNLEPEDLAKLKMILLRLEGAIDAVELPGDNSGVT 341
Query: 319 VPGN------------IRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAG 366
PG+ + L L +L+Q+L GR T AG
Sbjct: 342 KPGSYIFELFAEAQITFQTKGCILDSLDQLIQHLAGR--------------AGLFTNTAG 387
Query: 367 IDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII-------- 418
+ ++L ++ + D+ E D +VG ++ + + I
Sbjct: 388 L---------QKLVDIIQIVFSVDSAEG-------DPGPMVGLASQSYKVHIHLDAGHRR 431
Query: 419 -----EPFDERMPHIPDPVLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLN 472
+ ++ P VL C +++ V +++++TSGTL+P+ + +
Sbjct: 432 TAQRSDVWNTTAARKPGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTLAPMASFSLEMQ 491
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
V + + I V+ +G D +S+ FD R + GK+L + +VP
Sbjct: 492 IPFPVCLENPHVINQHQIWVGVIPKGPDGAQLSSAFDRRFSDECLSSLGKVLSNISRVVP 551
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDC 590
G++ FF SY M++ + W +++ K +F+E + + ++ + R A
Sbjct: 552 HGLLVFFPSYPVMEKSLEFWRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPE 611
Query: 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA+F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 612 SSGAIFLAVCRGKASEGLDFADVNGRGVIVTGLPY 646
>gi|348554129|ref|XP_003462878.1| PREDICTED: regulator of telomere elongation helicase 1-like [Cavia
porcellus]
Length = 1250
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 163/683 (23%), Positives = 279/683 (40%), Gaps = 108/683 (15%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ + +Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPFQPYHCQQ-EYMSKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L + LS N K+IY +RT ++ + +
Sbjct: 65 DTISARKIAERVQGELFLNQDLSSWGNATAADGDSIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ ++ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 EL--------RNTAYRPRVCVLG--SREQLCIHPEVKKQESNHVQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELVTPILDIEDLVKKGSKHKVCPYYLSRNLKQQADLI 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + + + +
Sbjct: 223 FMPYNYLLDTKSRKAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDVASGLEAIDQ 281
Query: 266 INQEIERFKATDAGRLRAEYNRLVEGL--------ALRGNLPIADAWLSNPALPSDILKE 317
+ +E R +L + GL L+ L +A + LP D
Sbjct: 282 VLEEQTRMAQQSELQLELSMDPTSSGLNMQLEDIAKLKMILLRLEAAIDAVQLPGDGSGV 341
Query: 318 AVPGN------------IRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHA 365
PG+ + L L +++Q+L GR T+ A
Sbjct: 342 TKPGSYIFNLFAEAQITFQSKICILESLDQIIQHLAGR--------------AGVFTSTA 387
Query: 366 GIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERM 425
G+ QK + + + + + L I T R + + +
Sbjct: 388 GL-QKLMDI-------IQIVFSLDPAEGSLGISQFYKVHIHPDTGLRKAAQRSDAWSTTA 439
Query: 426 PHIPDPVLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS 484
VL C +++ V +++++TSGTL+P+ + + V
Sbjct: 440 SRKQGKVLSYWCFSPGHSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHV 499
Query: 485 LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSY 544
+ + + V+ RG D +S+ FD R + GK L + +VP G++ FF SY
Sbjct: 500 IEKHQLWVGVVPRGPDGAELSSAFDKRFSEECLSSLGKTLGNIARVVPHGLLVFFPSYPV 559
Query: 545 MDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARG 602
M++ + W + +++ K +F+E + V + +D Y R A GA F +V RG
Sbjct: 560 MEKSLEFWRARDLARKLEALKPLFVEPRSKVSFSEVIDAYYQRVASPGSSGATFLAVCRG 619
Query: 603 KVAEGIDFDRHYGRLVIMFGVPF 625
K +EG+DF GR VI+ G+P+
Sbjct: 620 KASEGLDFSDTNGRGVIITGLPY 642
>gi|308812532|ref|XP_003083573.1| helicase-related (ISS) [Ostreococcus tauri]
gi|116055454|emb|CAL58122.1| helicase-related (ISS) [Ostreococcus tauri]
Length = 1048
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 188/682 (27%), Positives = 288/682 (42%), Gaps = 107/682 (15%)
Query: 9 TVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--------- 59
TV FPYD Y Q ++ A+ K LLE PTGTGKT+ LLS +Y
Sbjct: 19 TVSFPYD-AYDAQIVFIERALEAMCRKQSALLESPTGTGKTLCLLSAALAYARNEGRAKK 77
Query: 60 -----------------------VLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTR 96
V + E ++Y TRT ++ + L ELK+L + TR
Sbjct: 78 RRARAREKASTSETVTEEFVDAEVRRERERAPTIVYATRTHSQVRQVLGELKVL-DSNTR 136
Query: 97 HLGPAAKILAIGLSSRKNLCVNSRVLA-----AENRDSVDAACRKRTASWVRALAAENPN 151
A L+SRK+ C V A NR S A RK A V ++
Sbjct: 137 ---------ATTLASRKHACAREDVRALVGDAQNNRCSKLVAERKCGAKNVLDMSLNRKG 187
Query: 152 I-ETCEFFENYEKAASAAVLPPGVYTLQDLR-AFGKQQGWCPYFLARHMVQFANVVVYSY 209
I E + FE GV ++DL A K +G CP++L+R A ++ Y
Sbjct: 188 IGEKFDVFEG------------GVRDIEDLVIAAQKSRGPCPFYLSRTKCADAEIIFMPY 235
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL-SRINQ 268
YLL+ V + + +++VV+ DEAHN+++ +++S S+ L A + S
Sbjct: 236 NYLLNDTVRRGLDI-VWEDAVVIVDEAHNLESSAADSMSYSLTAAKLAKAIQETNSAWET 294
Query: 269 EIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEH 328
++ + G LR + L + RG A A+ SN D+L+ + + + E
Sbjct: 295 KLTVDDNDEEGVLRDDQKELFK----RGMGEEASAFGSN-----DVLE--LGRTLLQLEE 343
Query: 329 FLHVLRRLVQYLRGRLET--ENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLM--- 383
L + R G+ T E VE +F+ ++ GI Q F Y+R ++M
Sbjct: 344 VLDGVCREASTKSGKSGTLGECVEDG---AFIYNLLERVGITQ----FTYQRAVTIMKGA 396
Query: 384 -----LTLEITDTDEFLHIQT----ICDFATLVGTY--TRGFSIIIEP----FDERMPHI 428
L + + H +T I +F + T + F + P F
Sbjct: 397 AKMVQLGSDFMEAATGTHKETPLTEIANFIERLFTKRADQYFVTRVGPDTDNFKTSQRQR 456
Query: 429 PDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTR 487
P L C L +K + ++ S ++ SGTLSP++ + L V + R
Sbjct: 457 QGPTLSYWCFFPGLCLKELIEKNVGSFLLASGTLSPMESFSSELAMEFPVRLENPHVIQR 516
Query: 488 DCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDE 547
+ I VLT G +++ F R + G +++ IVPDG++ FF SY M+
Sbjct: 517 NQIWGGVLTHGPGGNVLNSSFRFRDTDNYKKEIGSVILSTAKIVPDGLLVFFPSYGVMNS 576
Query: 548 IIATWN--DSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCG--RGAVFFSVARGK 603
I W + G+ I K FIE + E Y +A + G RGA+FF+V RGK
Sbjct: 577 CIDHWRFVEGGLWAGIEASKTCFIEPSNSEEFQECYKRYNEALNDGTRRGAIFFAVCRGK 636
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
V+EGIDF R VI+ G+P+
Sbjct: 637 VSEGIDFADKACRGVILTGIPY 658
>gi|340715420|ref|XP_003396211.1| PREDICTED: LOW QUALITY PROTEIN: regulator of telomere elongation
helicase 1 homolog [Bombus terrestris]
Length = 996
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 161/697 (23%), Positives = 286/697 (41%), Gaps = 130/697 (18%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKT--------------- 49
+ +V V FP+ Y Q YM+++ L + +LE PTGTGKT
Sbjct: 6 INNVIVNFPF-KPYSIQEEYMVKVIECLQNGKNGVLESPTGTGKTLSLLCSSLSWLLTKK 64
Query: 50 --IALLSLITSYVLSKPE----------------------------NPVKLIYCTRTVHE 79
+ SLI + + KP+ P K+IY +RT +
Sbjct: 65 AQLQAQSLIGA--IEKPDFGGHFFKQLSNGLKEGTGDSEPTSNLGWAPPKIIYASRTHSQ 122
Query: 80 MEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTA 139
+ + + ELK +H+ A L SR LC++ V + + C +
Sbjct: 123 LSQAMQELK---RTSYKHVSTAV------LGSRDQLCIHPEVSKETSSSNKIYMCHSKIK 173
Query: 140 SWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMV 199
S TC ++ N E + V ++DL G++ CPYFL+R +
Sbjct: 174 S------------RTCFYYNNVESRKDDPLFKQEVLDIEDLVKVGQKFKCCPYFLSRELK 221
Query: 200 QFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGA 259
Q A++ Y YLLD K ++Q ++++ DEAHNI+ C EA S L+
Sbjct: 222 QNADITFMPYNYLLDSKSRKTQGIDIQ-NNIILLDEAHNIEKTCEEAAS-------LQIC 273
Query: 260 TRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAV 319
+ +++ EI A + E + +E GN+ + D + + + E
Sbjct: 274 STDIAMCIDEITAVMEDMASNIEQENDFSMEN---SGNI-VKDFTADDLCILKAMFLE-- 327
Query: 320 PGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERL 379
+ +A + +L+R N P ++ + A + + E+L
Sbjct: 328 ---LEKAIDAIEILKR------------NEGDTFPGGYIFELLGKAQLTHGREQLVIEKL 372
Query: 380 HSLMLTLEITDTDEFLHI-QTICDFATLVGT-YTRG------------FSIIIEPFDER- 424
+ L T T F + F+ L+ T ++ G + + I+ +++
Sbjct: 373 EKIAFYLTTTSTSPFTRKGHALQKFSDLLKTVFSSGDSPRYREKIKQCYKVYIQLEEQKK 432
Query: 425 ------------MPHIPDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLL 471
+ V+ C +++ + D+ +S+++TSGTLSP+ + L
Sbjct: 433 XKQNEVWETKKILKKNEGKVISYWCFSPGFSMQQLMDQGVRSIILTSGTLSPLKPFISEL 492
Query: 472 NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIV 531
+ + D IC VL++G D +++ F+ R+DP + G+ ++ I+
Sbjct: 493 GIPIELQLENPHIVKGDQICVGVLSQGPDGYSLNSSFNTRNDPKYIASLGRTVLNFSCII 552
Query: 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYR---KAC 588
P G++ FF SY M + W +G+ +I K +++E Q ++ Y K
Sbjct: 553 PYGLLVFFPSYPIMKKCKEEWQTTGLWTKIADRKPIYVEPQYRDGFINVMNEYYEKIKDP 612
Query: 589 DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
C +GA+F +V RGKV+EG+DF GR V++ G+PF
Sbjct: 613 SC-KGAIFMAVCRGKVSEGLDFANANGRAVLITGLPF 648
>gi|443695361|gb|ELT96293.1| hypothetical protein CAPTEDRAFT_129050, partial [Capitella teleta]
Length = 169
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 76/139 (54%), Positives = 99/139 (71%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
L+ + VYFPYD IYPEQY+YM ELKRALDA+GHC LEMP+GTGKT++LLSLI +Y+ +P
Sbjct: 31 LDGLLVYFPYDYIYPEQYAYMQELKRALDAQGHCALEMPSGTGKTVSLLSLIVAYMKQRP 90
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
+ KLIYC+RTV E+EK + ELK L Y R G + ++ + LSSRKNLC++ +
Sbjct: 91 LDVTKLIYCSRTVPELEKVVEELKNLIEYYERETGEPSTLVGLALSSRKNLCIHPELRGQ 150
Query: 125 ENRDSVDAACRKRTASWVR 143
+ +DA C TAS VR
Sbjct: 151 RDGKEIDARCHAMTASHVR 169
>gi|82752532|ref|XP_727340.1| DNA repair helicase [Plasmodium yoelii yoelii 17XNL]
gi|23483134|gb|EAA18905.1| DNA repair helicase, putative [Plasmodium yoelii yoelii]
Length = 1069
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 168/718 (23%), Positives = 303/718 (42%), Gaps = 143/718 (19%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--- 59
+ + DV V FPY+ +Y QY+YML + AL K + +LE PTGTGKT+ LL SY
Sbjct: 21 YTINDVEVCFPYE-LYDCQYNYMLSVLNALKKKENAILESPTGTGKTLCLLCASISYLVN 79
Query: 60 VLSK---------------------------PENPVK-----LIYCTRTVHEMEKTLAEL 87
VL K P+ +K +IY +RT ++++ + EL
Sbjct: 80 VLEKKGHFNESINIRENKSNVSFGFKENDNGPKKAIKADYPKIIYASRTHSQLKQVIKEL 139
Query: 88 KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAA 147
K ++ + K+L L SR LCV++ + C+ + + +
Sbjct: 140 KNVYFIKN---NEKYKLLTTILGSRDQLCVHN----------ISYNCK---GTMLNNMCK 183
Query: 148 ENPNIETCEFFENYE---KAASAAVLPPGVYTLQDL----RAFGKQQGWCPYFLARHMVQ 200
C + + K P V TL ++ + G+ +CP++ R +
Sbjct: 184 RVRKSGECMYHNGLKHLYKYKHLFTTPMDVETLNEIGKGNNSVGQNIHFCPFYATREIQN 243
Query: 201 FANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGAT 260
+V++ Y YL + I+ +++ +++ DE HNI+NV EA+S +R
Sbjct: 244 ECHVILLPYNYLFEENTRRILKLDLE-NCIIIIDEGHNIENVAEEAVSFKIRD------- 295
Query: 261 RNLSRINQEIERFKAT--------DAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPS 312
S +N +E KAT D + E + E L ++ WL N L
Sbjct: 296 ---SDLNLFLESIKATLTILEKVNDIDKEIQEKINVDELFILNRSINSLITWLDNERLER 352
Query: 313 DILKE------AVPGN--------------IRRAEHFLHVLRRLVQYLR--------GRL 344
+ K+ GN E+F ++L +++ L ++
Sbjct: 353 NDKKKIKERHKTYEGNKIFDIFENNNINISKSNFENFNNLLSNMIELLNKYINDFKLSQM 412
Query: 345 ETENVEKEGPVSFVASI----TAHAGIDQKTLRFCYERLHSLMLTLEITDTDE------F 394
+ +NV K ++A+I A + + ++ C E + ++ D +
Sbjct: 413 DVKNVNK-----YIATIDNVKKAFSILFSDIVKNCIEYFQLYINEEKVLYNDSNDPNKVY 467
Query: 395 LHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVF-DRFQS 453
H++ T +G +D + + + L C A+ ++ + ++ S
Sbjct: 468 DHMKKFTKIKTKIG------------YDNQNNYTMSKTISLLCFSATASLCGIIKEKVNS 515
Query: 454 VVITSGTLSPIDLYPRLLN-----FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKF 508
+++TSGTLSP++ + + L+ FH ++ + + + M T ++QL +ST +
Sbjct: 516 IIVTSGTLSPVEPFSKQLSGSYFSFHHILENDHVIKSHQLFVGCM--THYNNQLLLST-Y 572
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
+ RS+ + G + ++++ +P G++ FF SYS M E +ATW I +I +K +F
Sbjct: 573 ENRSNENYIKALGNCIFDIIACIPFGVLIFFSSYSSMTETVATWKKLKIFDKINSYKTIF 632
Query: 569 IETQDVVETTLALDNYRKACDCGR-GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+E + L Y R GA+ V RGK++EGIDF R VI+ G+P+
Sbjct: 633 VEPNKAADLKDILFQYENIIKKKRKGAILMGVCRGKISEGIDFKDDCCRGVIICGLPY 690
>gi|221060536|ref|XP_002260913.1| DNA-repair helicase [Plasmodium knowlesi strain H]
gi|193810987|emb|CAQ42885.1| DNA-repair helicase, putative [Plasmodium knowlesi strain H]
Length = 1106
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 167/720 (23%), Positives = 297/720 (41%), Gaps = 145/720 (20%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL- 61
+ + DV VYFPY+ +Y QY+YML + AL K + +LE PTGTGKT+ LL SY++
Sbjct: 21 YTINDVEVYFPYE-LYDCQYNYMLSVLNALKKKENAILESPTGTGKTLCLLCASISYLVD 79
Query: 62 -------------------------------------SKPENPV-KLIYCTRTVHEMEKT 83
+ P N K+IY +RT ++++
Sbjct: 80 VLEKKGAFSENINITENKKNISLDFKENENSRSSPPKASPANDFPKIIYASRTHSQLKQV 139
Query: 84 LAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR 143
+ ELK ++ + K+L L SR LCV++ + ++ C++
Sbjct: 140 IKELKNVYFIKN---NEKYKLLTTILGSRDQLCVHN-INYNYKGTMLNNMCKR------- 188
Query: 144 ALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL---RAFGKQQGWCPYFLARHMVQ 200
A +N + K +P V TL ++ + G+ +CP++ R +
Sbjct: 189 --ARKNGECMYHNGLKYLYKLKHLFTIPMDVETLSEIGKGNSVGQNIHFCPFYATREIQN 246
Query: 201 FANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTL---- 256
+V++ Y YL + I+ ++ S+++ DE HNI+ V EA+S ++ L
Sbjct: 247 ECHVILLPYNYLFEESTRKILKLNLE-NSIIIIDEGHNIETVAEEAVSFKIKDSDLNLFL 305
Query: 257 EGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILK 316
+G L+ ++ K D + E + E L ++ +WL N L
Sbjct: 306 DGIKATLTVLD------KVKDVDKEMRERISVDELFKLNRSITALISWLENERL------ 353
Query: 317 EAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCY 376
E N + +H + + + + N+ K+ F +T
Sbjct: 354 EISGKNKIKEKHKTYEGKEIFDIFQKN--NINITKDNFEKFHTLLTCMV----------- 400
Query: 377 ERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII--------IEPF-----DE 423
E L+ + +IT D ++ I + + + FSI+ IE F +E
Sbjct: 401 ELLNRYINDFKITAMD----VKNINKYIATIDNIRKSFSILFSDVVRNCIEYFQLFINEE 456
Query: 424 RMPHIP------------------------------DPVLQLSCHDASLAVKPVF-DRFQ 452
++P+ + L C A+ ++ + ++
Sbjct: 457 KVPYTECADVSKVYDNMKKFTKSKTKIVYDKYNYTMSKNISLLCFSATASLCGILKEKVN 516
Query: 453 SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM------VLTRGSDQLPVST 506
S+++TSGTLSPI+ + + L+ + SFK L D + +T ++Q+ +ST
Sbjct: 517 SIIVTSGTLSPIEPFSKQLSGNYF---SFKHILENDHVIKSHQLFVGCMTHYNNQILLST 573
Query: 507 KFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKL 566
++ RS+ + G + +++ +P G++ FF SYS M E + W I ++I +K
Sbjct: 574 -YENRSNDNYIQALGNCIFDLIICIPYGVLIFFSSYSSMTETVNAWKKFKIFEKINSYKT 632
Query: 567 VFIETQDVVETTLALDNYRKACDCGR-GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+F+E E L Y R GA+ V RGK++EGIDF R VI+ G+P+
Sbjct: 633 IFVEPNKAAELKDILQQYEYIIKKKRKGAILMGVCRGKISEGIDFKDDCCRGVIICGLPY 692
>gi|326932020|ref|XP_003212120.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Meleagris gallopavo]
Length = 1136
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 166/683 (24%), Positives = 286/683 (41%), Gaps = 140/683 (20%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALL-----------SLITSYVLSK--------PE 65
ML L+ K + +LE PTGTGKT+ LL I++ +++ P+
Sbjct: 6 MLALQSWSSKKVNGILESPTGTGKTLCLLCSTLAWREHFKDTISARKIAQRMNGVELFPD 65
Query: 66 NPV--------------------KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKIL 105
P+ K+IY +RT ++ + + ELK N R K+
Sbjct: 66 RPMSSWGNAATDGDIPAYYTDIPKIIYASRTHSQLTQVINELK---NTVYR-----PKVC 117
Query: 106 AIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAA 165
+G SR+ LC+N V E+ CRK+ + C F+ N E+ +
Sbjct: 118 VLG--SREQLCINPEVKRQESNHMQIYMCRKKVMA------------RACHFYNNVEEKS 163
Query: 166 SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM 225
+ L + ++DL G + CPY+L+R + Q A+++ Y YLLD K + E+
Sbjct: 164 TEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLDAKSRQAHNIEL 223
Query: 226 QKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEY 285
K +V++FDEAHN++ +C E+ S + L A ++ + + E+ K + AE+
Sbjct: 224 -KGTVIIFDEAHNVERLCEESSSFDLTAYDLASAIDVINVVLE--EQAKVVQQNEVNAEF 280
Query: 286 NRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLE 345
N +E ++ N+ + D I + + L L + +
Sbjct: 281 N--MESISSGLNMELED--------------------IAKIKKILLQLESAIDAVELPPN 318
Query: 346 TENVEKEGPVSFVASITAHAGIDQKT-----------LRFCYER---------LHSLMLT 385
V K+G S++ + A A I +T L+F R LH L
Sbjct: 319 DSGVTKDG--SYIFELFAKAQITFQTKASLLESLEQILQFLSGRTGIFINTSGLHKLSDI 376
Query: 386 LEIT-------DTDEFLHIQTICDFAT----LVGTYTRGFSIIIEPFDERMPHIPDPVLQ 434
++ DT FL Q+I + L + + + +D L
Sbjct: 377 IQTVFNIDLPEDTTSFLPPQSISRYYKVHIHLDNSNQKKKKERTDLWDSSAAKKQGKTLS 436
Query: 435 LSCHDASLAVKPVFDR-FQSVVITSGTLSPIDL--------YPRLL-NFHPVVSRSFKMS 484
C ++ + + +++++TSGTLSP+ +P LL N H + R +
Sbjct: 437 YWCFSPGYSMHELVRQGVRTIILTSGTLSPLSSFTMEMQIPFPVLLENPHVIDKRQLWVG 496
Query: 485 LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSY 544
++ +G D +++ ++ R + GK + +V +VP G++ FF SY
Sbjct: 497 ---------IIPKGPDGTVLNSTYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPV 547
Query: 545 MDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARG 602
MD+ + W + K I + K +F+E ++ +D Y + AC GA F +V RG
Sbjct: 548 MDKSLEYWREHDFAKRIEEVKPMFVEPRNKGSFAEVIDAYYGKIACPKSNGAAFLAVCRG 607
Query: 603 KVAEGIDFDRHYGRLVIMFGVPF 625
K +EG+DF GR VI+ G+PF
Sbjct: 608 KASEGLDFADMNGRGVIITGLPF 630
>gi|301111400|ref|XP_002904779.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262095109|gb|EEY53161.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 1058
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 179/681 (26%), Positives = 291/681 (42%), Gaps = 119/681 (17%)
Query: 2 IFKLE--DVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 59
+ KLE + V FP+ Y Q YM ++ AL +K + +LE PTGTGKT+ LL ++
Sbjct: 1 MVKLEICGIPVEFPFPP-YDSQLIYMEKVLLALTSKQNAILESPTGTGKTLCLLCATLAW 59
Query: 60 -----------VLSKPENP--------------------VKLIYCTRTVHEMEKTLAELK 88
L+ + P ++IY +RT ++++ + ELK
Sbjct: 60 RRELQKKLGTNTLAPAKRPGPSLAYEGYGSDGESDAPQLPRIIYSSRTHSQLKQVVQELK 119
Query: 89 LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAE 148
N R P +L SR++LCVN +V + ACR T R +
Sbjct: 120 ---NTSYR---PNVAVLG----SREHLCVNEKVSKLRGTRQ-NLACRS-TCKDRRCMHKL 167
Query: 149 NPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYS 208
F++Y K + P + +++L K++ CP+FL R+M+ A +V
Sbjct: 168 G--------FDSYAKRSKKQAQP--IMDIEELVTTMKEKIICPFFLTRNMLPEAEIVFVP 217
Query: 209 YQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQ 268
Y YL+DP I ++ S+++FDEAHN++++ EA S ++ + G +S ++
Sbjct: 218 YNYLIDPMARRSIGISIEN-SILIFDEAHNVESIASEAASYALSSNDISGC---ISEVDT 273
Query: 269 EIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEH 328
I R +T++ +L A N +E A+ L + E +P
Sbjct: 274 FI-RGLSTNSIQLNAGSNLTLEDSAVSRCLRM----------------EVLP-------- 308
Query: 329 FLHVLRRLVQYLRGRLETENVEKEG---PVSFVASI--TAHAGIDQKTLRFCYERLHSLM 383
R QY+ E NV E +S + I AH G D + + + S +
Sbjct: 309 -----RYPGQYIFEFFEQFNVNFETCPLVLSMIEEIIEVAHGGDDSQRAASKLDTMLSFL 363
Query: 384 LTLEITDTDEF-------LHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLS 436
T+ + +HIQ I + + G R F+ + V
Sbjct: 364 GTIFRSKEQHLQAAKNYRVHIQEIRERPSNSG---RLFN-----SGRKNKTTTTRVFNYW 415
Query: 437 CHDASLAVKPV-FDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVL 495
C +A + + + +V++TSGTLSP+D + L V + D + V+
Sbjct: 416 CFHPGVAFREICTNNVHNVILTSGTLSPLDTTVKELGIDFPVRLENNHVVDADQVWVGVV 475
Query: 496 TRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS 555
G +++ ++ RS G +V +VP G++ FF SYS ++E I W
Sbjct: 476 GTGVTGKKLNSSYNFRSTETYLLELGNTIVNFTRLVPHGLLVFFPSYSILEESIDKWQRP 535
Query: 556 G-------ILKEIMQHKLVFIETQDVVETTLALDNYRKA-CDCGRGAVFFSVARGKVAEG 607
I I+Q K F+E + + +D Y +A D +GAVFF+V RGKV+EG
Sbjct: 536 ATGQSALSIWDRIVQQKQTFVEPRGRADFKAVVDEYHQAIADNPKGAVFFAVCRGKVSEG 595
Query: 608 IDFDRHYGRLVIMFGVPFQYT 628
IDF GR VI+ G+PF T
Sbjct: 596 IDFSNDKGRAVIITGLPFPPT 616
>gi|345789824|ref|XP_543101.3| PREDICTED: regulator of telomere elongation helicase 1 [Canis lupus
familiaris]
Length = 1689
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 164/681 (24%), Positives = 284/681 (41%), Gaps = 100/681 (14%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L V V FP++ Y Q YM ++ L + + +LE PTGTGKT+ LL
Sbjct: 6 LNGVAVDFPFEP-YKCQEEYMSKVLECLQKRVNGILESPTGTGKTLCLLCSTLAWREHLR 64
Query: 54 SLITSYVLSKP--------------------------ENPVKLIYCTRTVHEMEKTLAEL 87
I+++ +++ + K+IY +RT ++ + + EL
Sbjct: 65 DAISAHKIAERVQGELFLDRTLSSWGDAAADAGAACYADIPKIIYASRTHSQLTQVIREL 124
Query: 88 KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAA 147
+ +Y+ R L SR+ LC++ V E+ CRK+ AS
Sbjct: 125 RNT-SYRPR---------VCVLGSREQLCIHPEVKKQESNHMQIHLCRKKVAS------- 167
Query: 148 ENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVY 207
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 168 -----RSCHFYNNVEEKSLEQELATPILDIEDLVKSGNKHKLCPYYLSRNLKQQADIIFM 222
Query: 208 SYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRIN 267
Y YLLD K S ++ K +VV+FDEAHN++ +C E S + + L ++
Sbjct: 223 PYNYLLDTKSRRAHSIDL-KGTVVIFDEAHNVEKMCEETASFDLTPHDVASGLDVLDQVL 281
Query: 268 QEIERFKATDAGRLRAEYNRLVEGL--------ALRGNLPIADAWLSNPALPSDILKEAV 319
+E + D R + + GL L+ L +A + LP D
Sbjct: 282 EEQTKAAQQDELRSEFSADSVNSGLHMELEDLAKLKMILLRLEAAIDAVELPGDHSGVTK 341
Query: 320 PGN------------IRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGI 367
PG+ + L L +++Q+L GR G S A + + I
Sbjct: 342 PGSYIFELFAEAQITFQTKGCILDSLDQIIQHLAGRT--------GLFSNTAGLQKLSDI 393
Query: 368 DQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPH 427
Q + F + +L + + D G + +G + +
Sbjct: 394 IQ--IVFSADPAEGTPGSLGGPGACQSYKVHIHPD----AGHHRKGPRS--DAWSSTAAR 445
Query: 428 IPDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT 486
P VL C +++ + + ++V++TSGTL+P+ + + V +
Sbjct: 446 KPGKVLSYWCFSPGHSMRQLVQQGVRTVILTSGTLAPVSSFALEMQIPFPVCLENPHVIH 505
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
+ I +++RG D +S+ FD R + GK L + +VP G++ FF SY ++
Sbjct: 506 QQQIWVGIVSRGPDGAQLSSAFDKRFSEACLSSLGKALGNIARVVPHGLLVFFPSYPVLE 565
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARGKV 604
+ W ++ K VF+E ++ + +D Y R AC GA F +V RGK
Sbjct: 566 RSLQFWRTHDSAGKLEALKPVFVEPRNKGGFSEVVDAYYARVACPGSTGATFLAVCRGKA 625
Query: 605 AEGIDFDRHYGRLVIMFGVPF 625
+EG+DF GR VI+ G+P+
Sbjct: 626 SEGLDFADMNGRGVIITGLPY 646
>gi|328871465|gb|EGG19835.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
Length = 1125
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 157/613 (25%), Positives = 266/613 (43%), Gaps = 73/613 (11%)
Query: 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQT 95
G PT T LL V S P K+ +C+RT ++ + +EL L Y+
Sbjct: 274 GGSAATSPTTNVSTPDLLEKAKEEVASVP----KIFFCSRTHSQIAQLTSEL-LKTPYRP 328
Query: 96 RHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETC 155
R L+SR + C+N ++ + + CRK VR C
Sbjct: 329 R---------MCVLASRDHYCINPKLAGYDRKKD---KCRK-----VRKE-------RNC 364
Query: 156 EFFENYEKAASAAVLP---PG----VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYS 208
F E K S + +P PG V++++D GK G CPY+ ++ ++ AN++
Sbjct: 365 RF-ERRTKQYSLSQIPKFLPGGEKEVWSIEDFIDGGKDLGECPYYASKGFIEHANLIFCP 423
Query: 209 YQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQ 268
Y Y+++P + I KE S+++FDEAHNI++ + A S + ++ +N+
Sbjct: 424 YNYIIEPSIRKIF-KEHFDNSIIIFDEAHNIEDSLMSAASFELTKE----------EVNE 472
Query: 269 EIERFKATDAGRL---RAEYNRLVEGLALRGNLPIADAWLS-NPALPSDILKEAVPGNIR 324
+ K T + + +A N L L W+S N + +D N+
Sbjct: 473 STTQCKDTMSNSMIMDQATPNEKETMLYLYSLFDKMGTWMSRNEKVLTD-QDYKNQNNVW 531
Query: 325 RAEHFLHVL-----------RRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLR 373
L VL R+L + L RLE ++ E G VS A G +K L
Sbjct: 532 SGRKILEVLEKDFGLTAANYRKLRESL-DRLEKDDTEGGGTVS--AETPNKPG--EKGLA 586
Query: 374 FCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVL 433
++ + +E D +E L + + A L Y F + D RM V
Sbjct: 587 DEHQSKTKQRVKMEKRD-NELLSPKILGILANLAQVYDFVFGNLQFISDFRMFFQRQEVY 645
Query: 434 QLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDCICP 492
+ C + A K + ++ +++++TSGTL+P++ + L+ PV + + +
Sbjct: 646 GIWCMNPRSAFKSIREKARTIILTSGTLAPLNSFASELSSPFPVTAELGNLGDITKRVWI 705
Query: 493 MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW 552
L G++ + F + G +++ + +VP+G++ FF SY++M++I W
Sbjct: 706 GTLGVGTNNTKMDCTFKGSENLQFQDALGDAILKHLQVVPNGVLVFFPSYAFMEKIKNRW 765
Query: 553 NDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDR 612
+G+ +I Q K +F E + + L+ Y A GA FSV RGKV+EGI+F
Sbjct: 766 EMTGMYNKIDQCKPIFFEPKQTKDFKRVLEGYNDAVKT--GATLFSVCRGKVSEGINFSD 823
Query: 613 HYGRLVIMFGVPF 625
Y R VI+ G+P
Sbjct: 824 EYARGVIIVGIPL 836
>gi|341883785|gb|EGT39720.1| hypothetical protein CAEBREN_25454 [Caenorhabditis brenneri]
Length = 810
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 170/706 (24%), Positives = 301/706 (42%), Gaps = 146/706 (20%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV----LSK 63
V V FP++ Y Q +M + LD+K LE PTGTGKT++LL ++V +K
Sbjct: 20 VCVKFPFEP-YECQRIFMKNVIDVLDSKLDAALESPTGTGKTLSLLCSTLAWVNREKETK 78
Query: 64 P----------------ENPVK------LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
P E+ +K + Y +RT ++E+ + EL +T +
Sbjct: 79 PLDFATWQTSGAGGAGTEDKLKKTFIPTIFYASRTHSQLEQVVHELN-----RTEYKWVK 133
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
IL SR++ C+N +V + + R A R L ++ +C + +
Sbjct: 134 TTILG----SREHFCINQKVKKIKESN--------RQAHVCRGLVSKR----SCHYHNKF 177
Query: 162 EKAAS---AAVLPPG-VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKV 217
+ + +L G ++D G Q CPY+++R + A +++ Y Y++DPK+
Sbjct: 178 DACTTDKMTEILDTGEAMDIEDFVKLGTQNSICPYYMSRQRSETAELILLPYNYIIDPKM 237
Query: 218 AGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR-----INQE--- 269
++ K S+V+FDEAHN++++C S + ++ L + +++E
Sbjct: 238 RRRYKLDL-KNSIVIFDEAHNLESICESNASTELSSTSIALCIEELKKVLALLVDEEETA 296
Query: 270 ----------------------IERFKATDAGR-------LRAEYNRLVEGLALRGNLPI 300
IE K D L E ++L E L+ N+P
Sbjct: 297 RTEADGCMEAFGSQKIDLTKRLIENLKTEDLMALLEKVFLLEEEIDKLFESDKLK-NIPP 355
Query: 301 ADAWLSNPALPSDILKEA-VPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGP----- 354
D S+ + ++L A GN E F+ VLR + YL + E ++ ++G
Sbjct: 356 LDGKASDGEVLLEVLARAGFDGN--SVERFVDVLRDAISYLLSKNEEVSLTEKGDGMETL 413
Query: 355 VSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTD----EFLHIQTICDFATLVGTY 410
F+ SI + H+ + + D + + ++T+ + L
Sbjct: 414 ADFLLSIYS---------------THAQEIAAAVGDESVKLVDRIDLKTVANNCKLYIKK 458
Query: 411 TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPID--LY 467
G + ++ C AS++++ + R ++V++ SGTLSPI Y
Sbjct: 459 EEGSGKL--------------TIKYFCFQASISMRMLKMRGVRNVLLASGTLSPIQAFTY 504
Query: 468 PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEM 527
LNF ++ + +L + + ++TRG + ++ F R + + G+ L+ +
Sbjct: 505 NMGLNFGSILEN--EHALKQVPVLTSIVTRGK-RGGLTGSFQNRKNIDYVTDVGESLIRV 561
Query: 528 VSIVPDGIVCFFVSYSYMDEIIATW------NDS--GILKEIMQHKLVFIETQDVVETTL 579
+ P GI+ FF SYS MDE++ATW NDS + + + + K V +E + E
Sbjct: 562 MESTPQGILVFFSSYSQMDELVATWKTTKRPNDSLETLWERMEKSKKVVVEPRAKEELAA 621
Query: 580 ALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y + GA +V RGKV+EGIDF R VI+ G+P+
Sbjct: 622 VRLRYTQGVSEPHGAALLAVCRGKVSEGIDFCDAESRAVIIVGIPY 667
>gi|440889948|gb|ELR44730.1| Regulator of telomere elongation helicase 1 [Bos grunniens mutus]
Length = 1264
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 167/682 (24%), Positives = 282/682 (41%), Gaps = 104/682 (15%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY----- 59
L+ VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL ++
Sbjct: 6 LKGVTVDFPF-QPYKCQEEYMSKVLECLQEKVNGILESPTGTGKTLCLLCSTLAWREHLR 64
Query: 60 --VLSK--PENPVKLIYCTRTVHEMEKTLAE------------------LKLLHNYQTRH 97
V ++ E ++ RT+ + E L +R
Sbjct: 65 DAVSARRIAERASGELFPDRTLASWGNAIPEGDVPEACPHFSALPPHLPWTLTQAGLSRR 124
Query: 98 LGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEF 157
P + + L SR+ LC++ V E+ CR++ AS +C F
Sbjct: 125 ESPCQPRVCV-LGSREQLCIHPEVKKQESNHMQVHLCRRKVAS------------RSCHF 171
Query: 158 FENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKV 217
+ N E+ + L + ++DL G + CPY+L+R++ Q A+++ Y YLLD K
Sbjct: 172 YNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLDAKS 231
Query: 218 AGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEI-ERFKAT 276
++ K +VV+FDEAHN++ +C EA S + T L I+Q + ER K
Sbjct: 232 RRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASGLDVIDQVLEERTKVA 287
Query: 277 DAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRL 336
L E++ G L NL P D+ K +L RL
Sbjct: 288 QQAELHPEFSADSAGSGL--NLE-----------PEDLAK------------LKMILLRL 322
Query: 337 VQYLRG-RLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLE-----ITD 390
+ L +N P S++ + A A I +T + L L+ L T+
Sbjct: 323 EGAIDAVELPGDNSGVTKPGSYIFELFAEAQITFQTKGCILDSLDQLIQHLAGRAGLFTN 382
Query: 391 TDEFLHIQTIC-----------DFATLVGTYTRGFSIII-------------EPFDERMP 426
T + I D +VG ++ + + I + ++
Sbjct: 383 TAGLQKLVDIIQIVFSVDSAEGDPGPMVGLASQSYKVHIHLDAGHRRTAQRSDVWNTTAA 442
Query: 427 HIPDPVLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSL 485
P VL C +++ V +++++TSGTL+P+ + + V +
Sbjct: 443 RKPGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTLAPMASFSLEMQIPFPVCLENPHVI 502
Query: 486 TRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYM 545
+ I V+ +G D +S+ FD R + GK+L + +VP G++ FF SY M
Sbjct: 503 NQHQIWVGVIPKGPDGAQLSSAFDRRFSDECLSSLGKVLSNISRVVPHGLLVFFPSYPVM 562
Query: 546 DEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARGK 603
++ + W +++ K +F+E + + ++ + R A GA+F +V RGK
Sbjct: 563 EKSLEFWRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPESSGAIFLAVCRGK 622
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
+EG+DF GR VI+ G+P+
Sbjct: 623 ASEGLDFADVNGRGVIVTGLPY 644
>gi|348685651|gb|EGZ25466.1| hypothetical protein PHYSODRAFT_485995 [Phytophthora sojae]
Length = 1080
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 165/682 (24%), Positives = 283/682 (41%), Gaps = 119/682 (17%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL-------------- 53
+ V FP+ Y Q YM ++ AL +K + +LE PTGTGKT+ LL
Sbjct: 9 IPVEFPFPP-YDSQLVYMEKVLLALTSKQNAILESPTGTGKTLCLLCATLAWRRQLQKTL 67
Query: 54 ---SLITSYVLSK-------------------PENPVKLIYCTRTVHEMEKTLAELKLLH 91
++ TS + P+ P ++IY +RT ++++ + ELK
Sbjct: 68 GKSAMATSSAAQQRPGASLAYEGYGSDGESDAPQLP-RIIYSSRTHSQLKQVVQELK--- 123
Query: 92 NYQTRHLGPAAKILAIGLSSRKNLCVN---SRVLAAENRDSVDAACRKRTASWVRALAAE 148
N R P +L SR++LCVN S++ + + C+ R +
Sbjct: 124 NTSYR---PNVAVLG----SREHLCVNEKVSKLRGTRQNLACRSTCKDRRCMYKLG---- 172
Query: 149 NPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYS 208
F+ Y K + P + +++L K++ CP+FL R+M+ A ++
Sbjct: 173 ---------FDAYAKRSKKQAQP--IMDIEELVTTMKEKTICPFFLTRNMLPEAEIIFVP 221
Query: 209 YQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEG---------- 258
Y YL+DP I ++ S+++FDEAHN++++ EA S ++ + G
Sbjct: 222 YNYLIDPLARRSIGISIEN-SILIFDEAHNVESIASEAASYALSSNDISGCISEVDTFIR 280
Query: 259 ATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAW-LSNPALPSDILKE 317
A +N S Q LRA + + +GL P++ + + P E
Sbjct: 281 ALQNNSVQLQAGSNLTMESTQTLRALFMEINKGL---NGFPLSSSGGFTKPGQYIFEFFE 337
Query: 318 AVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEK--EGPVSFVASITAHAGIDQKTLRFC 375
N L+++ +++ G +++ + +SF+ +I R
Sbjct: 338 QFNVNFETCPLVLNMIEEIIEVAHGGDDSQRAASKLDTMLSFLGTI----------FRSK 387
Query: 376 YERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQL 435
+ L + + +HIQ + + + G G R V
Sbjct: 388 EQHLQAA--------KNYRVHIQEVRERPSNAGRLFNG---------GRNKKTTTRVFNY 430
Query: 436 SCHDASLAVKPV-FDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMV 494
C +A + + + +V++TSGTLSP+D + L V + D + V
Sbjct: 431 WCFHPGVAFREICANNVHNVILTSGTLSPLDTTVKELGIDFPVRLENNHVVDADQVWVGV 490
Query: 495 LTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND 554
+ G +++ ++ RS G +V +VP G++ FF SYS ++E I W
Sbjct: 491 VGTGVTGKRLNSSYNFRSTETYLLELGNTIVNFTRLVPHGLLVFFPSYSILEESIDKWKR 550
Query: 555 SG-------ILKEIMQHKLVFIETQDVVETTLALDNYRKA-CDCGRGAVFFSVARGKVAE 606
I I+Q K F+E + + +D Y +A D +GAVFF+V RGKV+E
Sbjct: 551 PAAGESALSIWDRIVQQKQTFVEPRGRADFKAVVDEYHQAITDNPKGAVFFAVCRGKVSE 610
Query: 607 GIDFDRHYGRLVIMFGVPFQYT 628
GIDF GR V++ G+PF T
Sbjct: 611 GIDFSNDKGRAVVITGLPFPPT 632
>gi|302818654|ref|XP_002991000.1| hypothetical protein SELMODRAFT_132642 [Selaginella moellendorffii]
gi|300141331|gb|EFJ08044.1| hypothetical protein SELMODRAFT_132642 [Selaginella moellendorffii]
Length = 834
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 148/605 (24%), Positives = 252/605 (41%), Gaps = 102/605 (16%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
P+K+ +C+RT ++ + + ELK + + I L SRK LCVN VL +
Sbjct: 162 PLKIFFCSRTHSQLSQFIRELK--------RTSFSTSLKTIALGSRKTLCVNQDVLKLGS 213
Query: 127 RDSVDAAC---------------RKRTASWV-----------RALAAENPNIETCEFF-- 158
++ C + + S+V R + ++ C F
Sbjct: 214 ASRINDRCLDLQKKKKSSSQKVSTRNSPSFVSHHNFFQVDDQRVIKSKT---SACPFLKK 270
Query: 159 ENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVA 218
+ K AV+ ++DL G++ G CPY+ +R+ + A VVV YQ LL
Sbjct: 271 QRQRKQFKEAVVASQPMDIEDLVHLGQKLGSCPYYGSRNSLPMAQVVVLPYQSLLHAATR 330
Query: 219 GIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDA 278
+ + K+SVV+FDEAHN+ + S + L + S++++ + RF+
Sbjct: 331 ESLGINL-KDSVVIFDEAHNLVDTVTNTYSSQLSTLQLRQVS---SQLSEYLSRFRT--- 383
Query: 279 GRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQ 338
RL R ++ L L + A L L S +E PG
Sbjct: 384 -RLAPANRRYIQTL-----LVLVQALLER--LMSVGSREKEPG----------------- 418
Query: 339 YLRGRLETENVEKEGPVSFVASITAHAGIDQKTL-RFCYERLHSLMLTLEITDTDEFLHI 397
++V+ ++ + GID L + C S ++ D++L
Sbjct: 419 -------VQDVQTPAAITTINDFVFSLGIDNINLFKLCRYIKESNIVNKVSGYGDKYLSQ 471
Query: 398 QTICDFATLVGTY-------------TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
Q ++ G + + G +I+E D + + + DA+
Sbjct: 472 QNELSPSSTAGFHALAAFLVSLTTAQSDGRVLIVESSD------GECMFKFLMLDAAKHF 525
Query: 445 KPVFDRFQSVVITSGTLSPI-DLYPRLLNFHPVVSRSF---KMSLTRDCICPMVLTRGSD 500
V + ++V++ GTL P+ ++ RLL P S F + + I P+ + +G
Sbjct: 526 SEVVQQARTVILAGGTLQPVAEMRDRLLFQVPDESLHFFSCGHIVPGESILPLAIAKGPS 585
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ RS P + G+LLV + IVP+GIV FF S+ Y ++ W+ SGIL
Sbjct: 586 GKTFDFTYQSRSSPQMIEELGRLLVNISVIVPEGIVVFFPSFEYESQVHKCWDKSGILSS 645
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIM 620
I++ K +F E ++ L Y+ + G GA+ SV GK++EGI+F GR V+M
Sbjct: 646 ILKKKNIFREPRNASAVEAVLQEYKTSITTGGGALLLSVVGGKMSEGINFSDGMGRCVVM 705
Query: 621 FGVPF 625
G+P+
Sbjct: 706 VGLPY 710
>gi|328783139|ref|XP_396001.4| PREDICTED: regulator of telomere elongation helicase 1 homolog
[Apis mellifera]
Length = 976
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 156/696 (22%), Positives = 290/696 (41%), Gaps = 122/696 (17%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKT--------------- 49
+ ++ + FP+ Y Q YM ++ + L + +LE PTGTGKT
Sbjct: 6 INNIIINFPFKP-YSIQEEYMAKVIQCLQNSKNGVLESPTGTGKTLSLLCSSLSWLLTKK 64
Query: 50 --IALLSLITSYVLSKPE---------------------------NPVKLIYCTRTVHEM 80
+ SL+ + + +P N K+IY +RT ++
Sbjct: 65 AQLQAQSLVNT--IEEPNFGGHFFKQLNNGLKKSTGDSESITFNWNAPKIIYASRTHSQL 122
Query: 81 EKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTAS 140
+ + ELK +H+G A L SR LC++ V N + C + S
Sbjct: 123 SQAMQELK---RTSYKHVGTAV------LGSRDQLCIHPEVSKETNSSNKIYMCHSKVKS 173
Query: 141 WVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQ 200
TC ++ N E + ++DL G++ CPYFL+R + Q
Sbjct: 174 ------------RTCFYYNNIESRKDDPFFKQEILDIEDLVKAGQKFKCCPYFLSRELKQ 221
Query: 201 FANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV----------------CI 244
A+++ Y Y+LD K I ++Q ++++FDEAHNI+ + CI
Sbjct: 222 NADIIFMPYNYILDAKSRKIQGIDIQ-NNIILFDEAHNIEKICEETASLQISSTDIAMCI 280
Query: 245 EALSVSVRR--QTLEGATRNLSRINQEIER-FKATDAGRLRAEYNRLVEGLALRGNLPIA 301
+ ++V + + +E L ++ +++ F A D L+A + L + +
Sbjct: 281 DEITVVMEDMAKDIEQQNNFLMENSENVQKDFTADDLCILKAMFLELEKAI--------- 331
Query: 302 DAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASI 361
DA ++ + PG ++ L Q + GR E +EK + F +
Sbjct: 332 DAI----SIVKRDEGDTFPGG------YIFELLGKAQLIHGR-EQLVIEKLEKIVFYLTT 380
Query: 362 TAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPF 421
T+ + +K ++ L+ T +D F + + + S + +
Sbjct: 381 TSTSPFTRKGNAL--QKFSDLLKTAFSSDNSLFSKEKIKQYYKVYIQLEEHKKSKQNDVW 438
Query: 422 DER--MPHIPDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVS 478
D++ + ++ C +++ + ++ +++++TSGTLSP+ + L V
Sbjct: 439 DKKKILSKNEGKIINYWCFSPGFSMQQLKNQGARAIILTSGTLSPLKPFISELGIPIEVQ 498
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCF 538
+ D IC +L++G D +++ F+ R+DP R+ G+ + +VP G++ F
Sbjct: 499 LENSHIVKEDQICVGILSQGPDGYSLNSSFNTRNDPKYIRSLGQTIFNFSCLVPYGLLVF 558
Query: 539 FVSYSYMDEIIATWNDSGILKEIMQHKLV--------FIETQDVVETTLALDNYRKACDC 590
F SY M + W ++G+ +I K++ I + + + Y K D
Sbjct: 559 FPSYPIMKKCKEEWQNTGLWTKIADRKVIIFNIYIKMIIYNKKDGFINVMNEYYEKIKDP 618
Query: 591 G-RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA+F +V RGKV+EG+DF GR V++ G+PF
Sbjct: 619 SCTGAIFMAVCRGKVSEGLDFANANGRAVLITGLPF 654
>gi|297850494|ref|XP_002893128.1| hypothetical protein ARALYDRAFT_472311 [Arabidopsis lyrata subsp.
lyrata]
gi|297338970|gb|EFH69387.1| hypothetical protein ARALYDRAFT_472311 [Arabidopsis lyrata subsp.
lyrata]
Length = 1138
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 170/698 (24%), Positives = 285/698 (40%), Gaps = 140/698 (20%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALD-----AKGHCLLEMPTGTGKTIALLSLI 56
++++ + V FPY Y Q ++M + LD H LLE PTGTGK+++LL +
Sbjct: 26 VYQIGGLQVEFPY-QPYGTQLAFMSRVISTLDRAQRDGHSHALLESPTGTGKSLSLLCSV 84
Query: 57 TSYVLS--------------------------KPENPV--KLIYCTRTVHEMEKTLAELK 88
++ S +P P + Y +RT ++ + + E
Sbjct: 85 LAWQKSYKSRFPNGNLTHSRTHPSDNAASCNVEPPEPAIPTIYYASRTHAQITQVIREY- 143
Query: 89 LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAE 148
R G + +G SRK C NS V EN VD C R L +
Sbjct: 144 -------RKTGYRVPMTVLG--SRKRYCTNSHVQGKEN---VDEKC--------RLLLKD 183
Query: 149 NPNIETCEFFENYEKAASAAVLPP--------GVYTLQDLRAFGKQQGWCPYFLARHMVQ 200
NI+ EF K + P GV+ ++DL GK CPYF + M++
Sbjct: 184 KKNIKCAEF-----KGVGQILAYPSLQQNGHNGVHDIEDLVKIGKTVTGCPYFASWKMLE 238
Query: 201 FANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGAT 260
A +V Y Y++DP + G ++ + ++++FDEAHN++++ EA S+++ L
Sbjct: 239 VAQLVFCPYSYIIDPVIRGGVNLQ---GAIIIFDEAHNMEDIAREAGSINMEEDILFKLK 295
Query: 261 RNLSRINQ---EIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKE 317
L ++++ EI L + R + L R + W + A LKE
Sbjct: 296 NELEQVSENEPEIYESLYIVVEGLISWIGRKKDSLVKRDSEHYFSNWTGDRA-----LKE 350
Query: 318 AVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQ--KTLRFC 375
NI E+F ++ Q + + E ++ + P +++ I+ + +++ TL +
Sbjct: 351 LKEFNI-TPENFPNLEACFNQAIT-KSEASEMDPDKP--YLSGISV-STLEELFATLTYF 405
Query: 376 YERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQL 435
+ R S +L E + +Q T +T FS L
Sbjct: 406 FSRNGSHVLDYE-------MGLQRSAKRGTRDNGWTHTFS-------------------L 439
Query: 436 SCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDC-ICPMV 494
C + S+ K + D S+++TSGTLSP++ + L + + +
Sbjct: 440 WCMNPSVVFKDLADLSLSIILTSGTLSPMNSFSSELGMQFGTCLEAPHVIDPNMQVWAGA 499
Query: 495 LTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND 554
++ G P++ + GK L E+ SIVP G + FF SY M+++ W++
Sbjct: 500 ISSGPGNFPLNASYKTADAYAFQDALGKSLEEICSIVPGGSLVFFPSYKLMEKLCTRWHE 559
Query: 555 SGILKEIMQHKLVFIE----TQDVVETTLA----------LDNYRKA------------- 587
+G + + FIE +D ET L N R +
Sbjct: 560 TGQWSRLCLKRDFFIEPRGGAKDDFETVLKEYYDSISGNNRSNGRNSRVKKAGSVITEAQ 619
Query: 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
D RG+ F +V RGKV+EG+DF R VI+ G+PF
Sbjct: 620 DDSKRGSAFLAVCRGKVSEGLDFSDDNARAVIIVGIPF 657
>gi|302802273|ref|XP_002982892.1| hypothetical protein SELMODRAFT_116951 [Selaginella moellendorffii]
gi|300149482|gb|EFJ16137.1| hypothetical protein SELMODRAFT_116951 [Selaginella moellendorffii]
Length = 852
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 147/605 (24%), Positives = 251/605 (41%), Gaps = 102/605 (16%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
P+K+ +C+RT ++ + + ELK + + + L SRK LCVN VL +
Sbjct: 180 PLKIFFCSRTHSQLSQFIRELK--------RTSFSTSLKTVALGSRKTLCVNQDVLKLGS 231
Query: 127 RDSVDAAC---------------RKRTASWV-----------RALAAENPNIETCEFF-- 158
++ C + + S+V R + ++ C F
Sbjct: 232 ASRINDRCLDLQKKKKSSSQKVSTRNSPSFVSHHNFFQVDDQRMIKSKT---SACPFLKK 288
Query: 159 ENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVA 218
+ K AV+ ++DL G++ G CPY+ +R+ + A VVV YQ LL
Sbjct: 289 QRQRKQFKEAVVASQPMDIEDLVHLGQKLGSCPYYGSRNSLPMAQVVVLPYQSLLHAATR 348
Query: 219 GIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDA 278
+ + K+SVV+FDEAHN+ + S + L + S++++ + RF+
Sbjct: 349 ESLGINL-KDSVVIFDEAHNLVDTVTNTYSSQLSTLQLRQVS---SQLSEYLSRFRT--- 401
Query: 279 GRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQ 338
RL R ++ L L + A L L S +E PG
Sbjct: 402 -RLAPANRRYIQTL-----LVLVQALLER--LMSVGSREKEPG----------------- 436
Query: 339 YLRGRLETENVEKEGPVSFVASITAHAGIDQKTL-RFCYERLHSLMLTLEITDTDEFLHI 397
++V+ ++ + GID L + C S ++ D++L
Sbjct: 437 -------VQDVQTPAAITTINDFVFSLGIDNINLFKLCRYIKESNIVNKVSGYGDKYLSQ 489
Query: 398 QTICDFATLVGTY-------------TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
Q ++ G + + G +I+E D + + DA+
Sbjct: 490 QNELTPSSTAGFHPLAAFLVSLTTAQSDGRVLIVESSDGEC------MFKFLMLDAAKHF 543
Query: 445 KPVFDRFQSVVITSGTLSPI-DLYPRLLNFHPVVSRSF---KMSLTRDCICPMVLTRGSD 500
V + ++V++ GTL P+ +L RLL P S F + + I P+ + +G
Sbjct: 544 SEVVQQARTVILAGGTLQPVAELRDRLLFQVPDESLHFFSCGHIVPGESILPLAIAKGPS 603
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ RS P + G+LL+ + IVP+GIV FF S+ Y ++ W+ SGIL
Sbjct: 604 GKTFDFTYQSRSSPQMIEELGRLLINISVIVPEGIVVFFPSFEYESQVHKCWDKSGILSS 663
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIM 620
I++ K +F E ++ L Y+ + G GA+ SV GK++EGI+F GR V+M
Sbjct: 664 ILKKKNIFREPRNASAVEAVLQEYKTSITTGGGALLLSVVGGKMSEGINFSDGMGRCVVM 723
Query: 621 FGVPF 625
G+P+
Sbjct: 724 VGLPY 728
>gi|358341159|dbj|GAA28295.2| regulator of telomere elongation helicase 1 [Clonorchis sinensis]
Length = 1325
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 133/535 (24%), Positives = 233/535 (43%), Gaps = 78/535 (14%)
Query: 109 LSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASA- 167
+ SR LC+ V + ++ + ACR R + TC+++ N++ +
Sbjct: 92 IGSRDQLCLLPEVNSLDSSSAKIFACRGRVQT------------RTCDYYRNFDMKRDSL 139
Query: 168 --AVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM 225
+ GV ++DL GK G CPY+++R A ++ Y YLLDPK+ + + E+
Sbjct: 140 MNTIKAEGVVDIEDLVKLGKSTGCCPYYMSRESKTDAEIIFTPYNYLLDPKIRKLYNIEL 199
Query: 226 QKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEY 285
Q + V+FDEAHNI L + +T A+R + + I +K L +Y
Sbjct: 200 QN-TAVIFDEAHNIVRSSWSMLYAYILSKTPGYASRTTAEY-ECICTYKC-----LVQQY 252
Query: 286 NRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLE 345
++ ++ ++ PA+P + + FL V+ LV + +
Sbjct: 253 FYMMHCSSI----------ITAPAVPLSVDSWNLSTFWNEVSEFLKVISILVHCIADLFQ 302
Query: 346 ----TENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTIC 401
++NV P S + S+ G+D CY + DE L
Sbjct: 303 VVFDSKNV---SPHSNIFSLLRLPGVDYS---HCYR----------VFAKDEQLA----- 341
Query: 402 DFATLVGTYTRGFSIIIEPFDERMPHIPDPV----LQLSCHDASLAVKPVF-DRFQSVVI 456
RG +D R PV L C A++ + +R + V++
Sbjct: 342 ---------NRGRVTADRVWDSRGVGSNQPVTDRTLSYWCLSPGRAMQDLIKERVRCVIL 392
Query: 457 TSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGV 516
TSGTL PI+ L+ + +S + + + V+TRG D + +++ + R P
Sbjct: 393 TSGTLYPIEPIQSELHMNFPISLQNPHVIKPEQVRLAVITRGKDGIALNSSYATRDKPEY 452
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVE 576
+ G LVE++ IVP G++ FF SY M + + W + + +++++K +F+E +D V+
Sbjct: 453 RTSLGLTLVEIIQIVPAGLLVFFTSYGMMSQCVDAWKNEQLYDKMLRYKRIFVEPRDKVQ 512
Query: 577 TTLALDNYRKA------CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+YR CD GA F+V RG+ +EG+D GR V++ G+P+
Sbjct: 513 FAKVFSDYRDVASGAVPCDVN-GAALFAVMRGRASEGLDLADFAGRGVVVLGLPY 566
>gi|218188567|gb|EEC70994.1| hypothetical protein OsI_02661 [Oryza sativa Indica Group]
Length = 984
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 163/662 (24%), Positives = 268/662 (40%), Gaps = 122/662 (18%)
Query: 31 ALDAKGHCLLEMPTGTGKTIALLSLITSY------------------------VLSKPEN 66
+L + LLE PTGTGKT+ LL ++ S+P
Sbjct: 7 SLQQGKNALLESPTGTGKTLCLLCSALAWRRTFGEFLRGGGGGGGGGGSQQPPYGSQPSG 66
Query: 67 --------------PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSR 112
PV +IY +RT ++ + + ELK +Y+ + +A+ L SR
Sbjct: 67 SQHSGGSASQSSRYPV-IIYASRTHSQLRQVIKELKAT-SYRPK--------MAV-LGSR 115
Query: 113 KNLCVNSRVLAAENRDSVDAA---CRKRTASWVRALAAENPNIETCEFFENYEKAASAAV 169
+ +C++ V R +A C+KR W R + EF N + S A
Sbjct: 116 EQMCIHEEVSKLRGRQQNNACHYLCKKR---WCRH------HNSVAEFMRNNSELGSEAC 166
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
++DL G+ +G CPY+++R + + +++ Y YL+DP ++ +
Sbjct: 167 ------DIEDLVNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNA 220
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
V++FDEAHN++++C +A S + L ++ + I+ A A+
Sbjct: 221 VLIFDEAHNLESICADAASFDLLPNNLSSC---IAEAQECIQLCSAKRTFENSADKQFDP 277
Query: 290 EGLALRGNLPIA-DAWLSNPALPSDILKEAVPGNIRRAEHFLHVL-------RRLVQYLR 341
E A+ L +A + +S + S L PGN FL L ++L+ +
Sbjct: 278 ENYAILKALLMALEKKISEVVIDSKELGHTKPGNY--IYEFLSELNITSETSKKLIDTID 335
Query: 342 GR---LETENVEKEGPVSFVASITAHAGIDQKTLRFCYE---RLHSLMLTLEITDTDEFL 395
G LE N + GP + + L + + H+ + +
Sbjct: 336 GASLLLEEGNSAETGPGMKAKATVCRLETIRDILDIIFRGGGQSHAKYYRFHVNECQ--- 392
Query: 396 HIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFD-RFQSV 454
Q D ++G +R L C + LA++ +S+
Sbjct: 393 --QNSGDALKVLGKVSR-------------------TLSWWCFNPGLAMEEFLKLGVRSI 431
Query: 455 VITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDP 514
++TSGTLSP+D LN V + D I V+ G P+++ + R
Sbjct: 432 ILTSGTLSPLDSLALELNLEFPVRLENPHVIASDQIWVGVVPVGPSGHPLNSSYRTRETL 491
Query: 515 GVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG---------ILKEIMQHK 565
+ G +V IVPDG++ FF SYS MD+ I W D I + I +HK
Sbjct: 492 KYKQELGITIVNFARIVPDGLLVFFPSYSMMDKCINCWKDRNHENSSDEHTIWQRICKHK 551
Query: 566 LVFIETQDVVETTLALDNYRKAC--DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
IE + A+++Y GA+FF+V RGKV+EG+DF GR VI+ G+
Sbjct: 552 QPVIEPRQSSNFPNAIEDYAAKLRDSSTTGAIFFAVCRGKVSEGLDFADRAGRAVIVTGM 611
Query: 624 PF 625
PF
Sbjct: 612 PF 613
>gi|240254129|ref|NP_173495.5| RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]
gi|332191893|gb|AEE30014.1| RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]
Length = 1175
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 177/724 (24%), Positives = 285/724 (39%), Gaps = 165/724 (22%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDA---KGHC--LLEMPTGTGKTIALLSLI 56
++++ + V FPY Y Q ++M + LD GHC LLE PTGTGK+++LL +
Sbjct: 26 VYQIGGLQVEFPY-QPYGTQLAFMSRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSV 84
Query: 57 ----------------------------------------------TSYVLSKPENPVK- 69
S + K E K
Sbjct: 85 LAWQQNYKSRLLKGNLSHSKAAPEAATDPLNHGGGFIPETQPSDTPASTNVEKAETATKK 144
Query: 70 ------LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLA 123
+ Y +RT ++ + + E + +T + P A L+SRK+ C N VL
Sbjct: 145 RTKIPTIYYASRTHSQITQVIREYR-----KTGYRVPMAV-----LASRKHYCTNRHVLG 194
Query: 124 AENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP----GVYTLQD 179
+D+VD CR L + NI+ C F+N K S L P V+ ++D
Sbjct: 195 ---KDNVDDECR--------LLLKDKANIQ-CSEFKNVNKITSHPSLQPRGHNEVHDIED 242
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L GK CPYF + M + A +V Y Y+++P + + ++ K ++++FDEAHN+
Sbjct: 243 LVKVGKNVRGCPYFASWSMAENAQLVFCPYSYIVNPVIRAGVEVDL-KGAIIIFDEAHNM 301
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATD----------AGRLRAEYNRLV 289
+++ EA S+++ TL ++ E+E+ L + R
Sbjct: 302 EDIAREAGSINLEEDTL-------FKLQNELEQMSVAQPMIYQPLCEVVEGLISWIGRKK 354
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
+ LA R +W + AL +E NI R E F +L + +R E E
Sbjct: 355 DSLAKRDFQHYFSSWTGDKAL-----RELEESNITR-ECFPILLECFTKAIRTSKEAEME 408
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
+S ++ +T T F H L D L +Q GT
Sbjct: 409 SDMLYLSGISVLTLEELFSSLTYFFSRNGSHIL---------DYQLGLQRSTKRGDPSGT 459
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
+T FS L C + ++ K + D SV++TSGTLSP++ +
Sbjct: 460 WTHTFS-------------------LWCMNPAVVFKDLADISLSVILTSGTLSPMNSFSS 500
Query: 470 LLNFHPVVSRSFKMSLTRDC-ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMV 528
L S + + + ++ G P++ + GK L E+
Sbjct: 501 ELGMQFGTSLEAPHVIDPNMQVWAGAISNGPSNYPLNASYKTADAYSFQDALGKSLEEIC 560
Query: 529 SIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE----TQDVVETTLA---- 580
+IVP G + FF SY M+++ W ++ + K +F+E QD ++ L
Sbjct: 561 TIVPGGSLVFFPSYKLMEKLCMRWRETEQWSRLCLKKDLFVEPRGGAQDEFDSVLKGYYD 620
Query: 581 --------LDNYRKACDCG-----------RGAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
+ R+A G +GA F +V RGKV+EGIDF R VI+
Sbjct: 621 SIRGKNKIIGRNRRAKKAGPIKTETQDDSKKGAAFLAVCRGKVSEGIDFADDNARAVIIV 680
Query: 622 GVPF 625
G+PF
Sbjct: 681 GIPF 684
>gi|222618779|gb|EEE54911.1| hypothetical protein OsJ_02439 [Oryza sativa Japonica Group]
Length = 1025
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 168/707 (23%), Positives = 281/707 (39%), Gaps = 138/707 (19%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYML----------ELKRALDAKGHCLLEMPTGTGKTIA 51
++++ V V FP +++ EL ++ + LLE PTGTGKT+
Sbjct: 3 VYRIRGVDVDFPTTPTTARSHTWTASSNPSSSDGGELAGSIRQGKNALLESPTGTGKTLC 62
Query: 52 LLSLITSY------------------------------VLSKPEN--------------P 67
LL ++ S+P P
Sbjct: 63 LLCSALAWRRTFGEFLRGGGGGGGGGGGGGGAGSQQPPYGSQPSGSQHSGVSASQSSRYP 122
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
V +IY +RT ++ + + ELK +Y+ + +A+ L SR+ +C++ V R
Sbjct: 123 V-IIYASRTHSQLRQVIKELKAT-SYRPK--------MAV-LGSREQMCIHEEVSKLRGR 171
Query: 128 DSVDAA---CRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFG 184
+A C+KR W R + EF N + S A ++DL G
Sbjct: 172 QQNNACHYLCKKR---WCRH------HNSVAEFMRNNSELGSEAC------DIEDLVNIG 216
Query: 185 KQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCI 244
+ +G CPY+++R + + +++ Y YL+DP ++ +V++FDEAHN++++C
Sbjct: 217 RTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLESICA 276
Query: 245 EALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIA-DA 303
+A S + L ++ + I+ A A+ E A+ L +A +
Sbjct: 277 DAASFDLLPNNLSSC---IAEAQECIQLCSAKRTFENSADKQFDPENYAILKALLMALEK 333
Query: 304 WLSNPALPSDILKEAVPGNIRRAEHFLHVL-------RRLVQYLRGR---LETENVEKEG 353
+S + S L PGN FL L ++L+ + G LE N + G
Sbjct: 334 KISEVVIDSKELGHTKPGNY--IYEFLSELNITSETSKKLIDTIDGASLLLEEGNSAETG 391
Query: 354 PVSFVASITAHAGIDQKTLRFCYE---RLHSLMLTLEITDTDEFLHIQTICDFATLVGTY 410
P + + L + + H+ + + Q D ++G
Sbjct: 392 PGMKAKATVCRLETIRDILDIIFRGGGQSHAKYYRFHVNECQ-----QNSGDALKVLGKV 446
Query: 411 TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPR 469
+R L C + LA++ +S+++TSGTLSP+D
Sbjct: 447 SR-------------------TLSWWCFNPGLAMEEFLKLGVRSIILTSGTLSPLDSLAL 487
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
LN V + D I V+ G P+++ + R + G +V
Sbjct: 488 ELNLEFPVRLENPHVIASDQIWVGVVPVGPSGHPLNSSYRTRETLKYKQELGITIVNFAR 547
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSG---------ILKEIMQHKLVFIETQDVVETTLA 580
IVPDG++ FF SYS MD+ I W D I + I +HK IE + A
Sbjct: 548 IVPDGLLVFFPSYSMMDKCINCWKDRNHENSSDEHTIWQRICKHKQPVIEPRQSSNFPNA 607
Query: 581 LDNYRKAC--DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+++Y GA+FF+V RGKV+EG+DF GR VI+ G+PF
Sbjct: 608 IEDYAAKLRDSSTTGAIFFAVCRGKVSEGLDFADRAGRAVIVTGMPF 654
>gi|335310791|ref|XP_003362194.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit, partial [Sus scrofa]
Length = 308
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 94/139 (67%)
Query: 130 VDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGW 189
VD C TAS+VRA ++P++ C F+E LP G+Y L DL+A G++QGW
Sbjct: 52 VDGKCHSLTASYVRAQYQQDPSLPHCRFYEXXXVHGRQVPLPAGIYNLDDLKALGRRQGW 111
Query: 190 CPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSV 249
CPYFLAR+ + ANVVVYSY YLL ++SKE+ +++VVVFDEAHNIDNVCI+++SV
Sbjct: 112 CPYFLARYSILHANVVVYSYHYLLXXXXXDLVSKELARKAVVVFDEAHNIDNVCIDSMSV 171
Query: 250 SVRRQTLEGATRNLSRINQ 268
++ R+ L+ NL + +
Sbjct: 172 NLTRRMLDRCQGNLETLQK 190
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 84/119 (70%), Gaps = 10/119 (8%)
Query: 375 CYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQ 434
C ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEPFD+R P I +PVL
Sbjct: 200 CAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPVLH 259
Query: 435 LSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM 493
SC DASLA+KPVF+RFQSV+ITSG +L+FHPV +F M+L R C+CPM
Sbjct: 260 FSCMDASLAIKPVFERFQSVIITSG----------ILDFHPVTMATFTMTLARVCLCPM 308
>gi|394994903|gb|AFN42926.1| XPD2 protein, partial [Plasmodium falciparum]
Length = 526
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 137/261 (52%), Gaps = 61/261 (23%)
Query: 96 RHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA--------- 146
+ G ++ILAIG+S+R+ +C+N +VL R+ +D CRK TA+++R
Sbjct: 168 KEFGENSEILAIGISARRCMCINDKVLLKHEREKIDEECRKLTATFIREKKYINIKIDNE 227
Query: 147 -----------------------------------AENPNIETCEFFENYEKAASAAVLP 171
E NI C ++ENY+K ++
Sbjct: 228 IYHPNVDKISDFILRNRHHLDIEDYFDIYNSRNSLEEYDNIGLCGYYENYKKEFLYDLIK 287
Query: 172 PGVYTLQDLRAFGKQQG--------WCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS- 222
PGVYT++DL+ K CPYF A+ +++ + V++ +YQY++DPKV+ +
Sbjct: 288 PGVYTIEDLKVLCKNYKNKENVNVPICPYFCAKKIIEISKVIILNYQYVIDPKVSKALFS 347
Query: 223 -KEMQKE-------SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
K+M K ++VFDEAHNID+VC+EALSV++ R L A+ N++++ ++IE+ K
Sbjct: 348 WKDMNKNVHLKNKNDIIVFDEAHNIDSVCLEALSVNIDRNILNKASMNITKLMKKIEQSK 407
Query: 275 ATDAGRLRAEYNRLVEGLALR 295
+ +L+ E N+++E + L+
Sbjct: 408 MLNEQKLKEECNKILEKIKLQ 428
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
++F L+DV ++FPYD IYPEQY+YM LK+ LD++GHC+LEMPTGTGKT+A+ SLITSY
Sbjct: 2 VVFNLDDVEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ 61
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ 94
K + K I+CTRTV EMEK+L ELK + Y+
Sbjct: 62 YHKKDEG-KFIFCTRTVAEMEKSLLELKKVIQYR 94
>gi|444517021|gb|ELV11342.1| Regulator of telomere elongation helicase 1 [Tupaia chinensis]
Length = 1288
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 166/715 (23%), Positives = 283/715 (39%), Gaps = 116/715 (16%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L V V FP+ Y Q YM ++ L K H LLE PTGTGKT+ LL
Sbjct: 6 LGGVVVDFPF-QPYKCQEQYMTKVLECLQKKVHGLLESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPE------NPV-------KLIYCTRTVHEMEKTLAE 86
L + LS +P+ K++Y +RT ++ + + E
Sbjct: 65 DSISARKIAERVPGELFSDQALSWGNAVAVDGDPIACYSDIPKILYASRTHSQLTQVIGE 124
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA-- 144
L+ +Y+ K+ +G SR+ LC++ V E+ + + RT WV A
Sbjct: 125 LRST-SYRP-------KVCVLG--SREQLCIHPEVKRQES-----SHVQVRTLPWVPAGG 169
Query: 145 ------------------------LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
L +C F+ N E+ + L + ++DL
Sbjct: 170 VHLRQEWQVRLHSSLVLAFLLQIHLCRRKVASRSCHFYNNVEEWSQEQELSSPILDIEDL 229
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
G Q CPY+L+R+ Q A+++ Y YLLDPK ++ K +VV+ DEAHN++
Sbjct: 230 VRSGSQHRVCPYYLSRNRKQQADLIFMPYNYLLDPKSRRAHGIDL-KGTVVILDEAHNVE 288
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
+C E+ S + + L ++ +E + + + LR
Sbjct: 289 KMCEESASFDLTPHDVASGLDALDQVLEEQTKLAQRSESHPELSTDATNSAILLR----- 343
Query: 301 ADAWLSNPALPSDILKEAVPGN------------IRRAEHFLHVLRRLVQYLRGRLETEN 348
+A + LP D PG+ + + L L +++Q+L GR
Sbjct: 344 LEAAIDAVELPGDRGGVTKPGSYIFELFAEAQITFQTKDCILDSLDQVIQHLAGRNVQLG 403
Query: 349 VEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFA---- 404
P+ + G T +RL ++ T+ D + A
Sbjct: 404 PGATPPLLCCGPSSCPTGAGVLTNTAGLQRLTDILQTVFSVDPPDSSPGSGGGPEALQPY 463
Query: 405 TLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKP-VFDRFQSVVITSGTLSP 463
LV + G + + VL C +++ V +++++TSGTL+P
Sbjct: 464 KLVAAGSAGAMRVRAQWPSPTLTPTGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTLAP 523
Query: 464 IDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSD----PGVARN 519
+ + + V + + I V+ +G D +S+ FD R++ PG +
Sbjct: 524 VSSFALEMQVPFPVCLENPHVIDKHQIWVGVVPKGPDGAQLSSAFDKRTEQPPLPGAGGD 583
Query: 520 YGKLLVEMVS-------IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ 572
+G ++ + +VP G++ FF SY M++ + W + + + K +F+E +
Sbjct: 584 WGTRCGDLAAFAGNIARVVPHGLLVFFPSYPVMEKSLEFWRARDLTRRVEVQKPLFVEPR 643
Query: 573 DVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ LD Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 644 SKGSFSEVLDAYYKRVAAPGSSGATFLAVCRGKASEGLDFSDMNGRGVIVTGLPY 698
>gi|388583056|gb|EIM23359.1| DNA repair helicase [Wallemia sebi CBS 633.66]
Length = 831
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 140/585 (23%), Positives = 255/585 (43%), Gaps = 85/585 (14%)
Query: 68 VKLIYCTRTVHEMEKTLAEL-KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
K+ + +RT ++ + ++E+ K + R I L+SRKNLC+N + A N
Sbjct: 203 TKIFFASRTHSQLSQFISEINKTTYKQDAR---------VISLASRKNLCINEK---ARN 250
Query: 127 RDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP----PGVYTLQDLRA 182
DA +R A A+ + C+F+ E+ + ++DL
Sbjct: 251 APGGDAGLNERCRELRTAPASSE---KRCKFYPKIEEQTKLLEFRDHALASIRNVEDLEE 307
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
GK CPY+ +R ++ + + Y LL + + + K+ +VV DEAHN+ +
Sbjct: 308 LGKNLNVCPYYGSRRAIKQSEICTLPYNLLLSKRARESMGISL-KDHIVVIDEAHNLIDT 366
Query: 243 CIEALSVSVRRQTLEGATRNLSR-INQEIERFKATDAGRLRAEYNRLVEGL-----ALR- 295
+ S SV +TL A + LS I + +R K L+ Y + ++GL +R
Sbjct: 367 ILAVHSCSVSLKTLNAAMKALSTYIQRYGKRLKGNHVVSLKL-YAKTLKGLINFCQKVRS 425
Query: 296 -GNLPIADAWLSNPALPSDILKE-AVPGNIRRAEHFL---HVLRRLVQYLRGRLETENVE 350
P + LP D++ + N+ E +L H+ ++L + + + +
Sbjct: 426 VNKKPTQEIIY----LPKDVVGDFGEDVNLGNVEAYLRDSHMSQKLGSFAEREAKKDGL- 480
Query: 351 KEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY 410
K G ++ S++ + ++ SL+L L D D
Sbjct: 481 KNGQLTSPESLSYASA-------NSMHQVQSLLLALAYPDAD------------------ 515
Query: 411 TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRL 470
++ FD +P + +L + H K + D +S+++ GT+ P+ +
Sbjct: 516 ----GRVVVTFDAEIPRLSYQLLNGAEH-----FKSIVDDARSIILAGGTMHPVSDFKTF 566
Query: 471 LNFHPVVSRSFKMSLTRDCICP------MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLL 524
L P + S SL+ + + P +T+G + +F+ RS + G ++
Sbjct: 567 L--MPSLPASRFNSLSCEHVIPPTNLLATAITKGPSGQEMDFRFENRSKVDLLNELGMII 624
Query: 525 VEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY 584
+V+++PDG+V FF SY Y++ + + W SG+LK I Q K VF E ++ + LD Y
Sbjct: 625 QNLVNLIPDGLVIFFPSYGYLNTVESHWKASGLLKRIEQKKKVFREPKESTDVQATLDKY 684
Query: 585 RKA----CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+A D G++ F+V K++EGI+F + R + M G+PF
Sbjct: 685 AEAILNKSDKMTGSILFAVVGAKLSEGINFSDNLARGIAMVGLPF 729
>gi|145525952|ref|XP_001448787.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416353|emb|CAK81390.1| unnamed protein product [Paramecium tetraurelia]
Length = 901
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 158/669 (23%), Positives = 284/669 (42%), Gaps = 107/669 (15%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS-- 62
+++ VYFP+ Y Q +YM + +AL+ K + LLE PTGTGKT++LL +++
Sbjct: 52 IDNTPVYFPHQ-PYEVQKAYMESVIQALNMKQNALLESPTGTGKTLSLLCASLAWLKKNR 110
Query: 63 -------KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNL 115
+P+N +K+IY +RT ++++ ELK P +L SR
Sbjct: 111 QDQQSSDQPKN-IKIIYSSRTHAQLKQVAMELK------KTIYKPNVSMLG----SRDQY 159
Query: 116 CVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVY 175
C+ + ++ +CRK V+A C+F++ A V
Sbjct: 160 CIRGEFSMLKGT-LLNQSCRKS----VKA--------NQCQFYKKEHLIVMAQSYSTLVS 206
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
+L++ R FG + CPY+ R + A++++ Y YLL+ ++ E S+++FDE
Sbjct: 207 SLEEARQFGLKNKLCPYYFERQRLDSADLILLPYNYLLEKDFQDVVQIE---NSILIFDE 263
Query: 236 AHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALR 295
AHN+ + + S + + A ++L + E+E A Y++L L
Sbjct: 264 AHNVQSTAEDGSSFFITLNNIVEAEKDLEKWIDELESVAAF--------YDQLKTKL--- 312
Query: 296 GNLPIADAWLSNPALPSDILKE--AVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
N A S +KE ++ I+ +L + Q++ E + + +G
Sbjct: 313 -----------NAAKVSSEMKEFKSIMITIKVFAQYLESFKTNQQFISSDKEEKYLILDG 361
Query: 354 PVSFVASITAHAGIDQKTLRFCYER-LHSLMLTLEITDTDEFL-HIQTICD--------- 402
A I + + T + E L + + T+ ++L H T+ D
Sbjct: 362 R-KISAMIFQYTQDKENTFKLWQENSLTNYAKGVNKTNFSKYLIHCSTLIDVMGELSQIP 420
Query: 403 ---FATLVGTYTRGFSII-IEPFDER----------------MPHIPDPVLQLSCH---- 438
F + V + +I +E E+ + + D QLS H
Sbjct: 421 GYHFESWVKFMKNVYDLITVEEEREKQQLSISSLQNEFNQYKLSFVLDQSNQLSIHMWCL 480
Query: 439 DASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLT- 496
+ SLA ++++ S+++TSGTLSP+ + L F + L + I +
Sbjct: 481 EPSLAFSRLYNKSIHSILLTSGTLSPMPSWSCELRI------PFDVQLANEHIIDLDKNL 534
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG 556
R ++ R + +G L+ + +P+GI+ F SYS M + + W +
Sbjct: 535 RIFQHKTYDFSYNQRDNEEYICGFGVTLLSLCQTIPNGILVIFSSYSLMFKFRSKWTQNK 594
Query: 557 ILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGR 616
++ + + K+ E Q + D Y++ +GA+ F+V RGKVAEGIDF R
Sbjct: 595 LIPRLSELKVCLWEPQQSNQMQNVFDTYKEK--SKKGAIMFAVHRGKVAEGIDFSDELCR 652
Query: 617 LVIMFGVPF 625
+ + GVP+
Sbjct: 653 AIFLVGVPY 661
>gi|403223632|dbj|BAM41762.1| helicase [Theileria orientalis strain Shintoku]
Length = 954
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 175/746 (23%), Positives = 318/746 (42%), Gaps = 165/746 (22%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS----- 62
+ V FPY+ Y Q S+M + +A+ + LLE PTGTGKT++L+ + +LS
Sbjct: 14 IDVKFPYEP-YELQKSFMESVIKAIKDGKNALLESPTGTGKTLSLICASLACILSNKTNK 72
Query: 63 -----------------------------------KPE----NPVKLIYCTRTVHEMEKT 83
KP+ N + +IY +RT ++++
Sbjct: 73 ILGGKTLEEEKKVNQDDILVSQLISLKGAIEKDLKKPKSILSNKMNIIYTSRTHSQLKQV 132
Query: 84 LAELKLLHNYQTRHL-GPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACR----KRT 138
++E++ + H G A +LA SR LC+N + D ++ CR R
Sbjct: 133 ISEVRKSSYCKEFHQKGLKAALLA----SRDLLCINP-AKGNLSGDHLNNFCRLLVQNRK 187
Query: 139 ASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHM 198
+ +L N E +F E + ++D+ GK+ +CPYF +
Sbjct: 188 CIYYNSLRGSKNN-EEAQFNE--------------LVDIEDMVKMGKRGTFCPYFAVKDA 232
Query: 199 VQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEG 258
+ A++++ Y YLL P V + + K S+V+ DEAHN+++V EA S V++
Sbjct: 233 QENADLILVPYNYLLSPSVRDAMDLKT-KNSIVIIDEAHNVESVAEEASSFFVKQT---- 287
Query: 259 ATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGN--------LPIADAWLSNPAL 310
+L++ + ++RF L + VE + + L D +L+N L
Sbjct: 288 ---DLAKFIEALKRFATFHKDSLMSNEKEKVEEVNINFTALSKLGICLAKTDEFLTNVTL 344
Query: 311 PSDILKEAVPGNIRRA---------------EHFLHVLRRLVQYLRGRLETENVEK---E 352
+ P N + + +H ++ +V++L L+ +++++ +
Sbjct: 345 ----IDSRDPRNQKMSRDQIGMRWSVKEIARQHVVYSANHVVKHLYNNLDYKSLKEARVD 400
Query: 353 GPVSFVASITAHAGID-------------QKTLR------FCYERLHSLMLTLEITDTDE 393
++ V ++ +D KTLR ++ S +L+ E+ D E
Sbjct: 401 DAIAQVVTLLTKGFLDSEAIDVSFLDHYDNKTLREDVLTFVQMKKFVSSILSQELFDFPE 460
Query: 394 FLHIQTICD-----------FATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASL 442
+ + D + V + R F + +E V + A L
Sbjct: 461 YYDVIITNDEKYENPKRRRSIESNVFGWNRKFKSRDQEEEEEHSERSYEVTPKIMNFACL 520
Query: 443 AVKPVFDRFQ-----SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRD-CICPM--- 493
P F R + S+++TSGTL P+D+ R + + + F++ L D I P
Sbjct: 521 QPIPTFIRIKREGLRSLILTSGTLGPLDVLERHIGGNYL---KFEIKLQNDHVIDPKRVW 577
Query: 494 --VLTRGSDQLP--VSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
V+T G+D+ P +S+ ++ R D G+ L + VP G++ FF SY M+ +
Sbjct: 578 AGVVT-GNDEDPNILSSAYNKRGDLNYITALGRALYGFIKSVPSGVLVFFGSYMVMNNTL 636
Query: 550 ATWNDSGILKEIMQHKLVFIETQ--------DVV-ETTLAL-DNYRKACDCGRGAVFFSV 599
+ W G+ ++ K +F+E + D++ E+T AL Y+ D GR ++FF++
Sbjct: 637 SCWKRLGLYSKMEMEKSIFVENRPPGFVRDNDIIPESTQALFTRYKDNIDSGRASMFFAI 696
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPF 625
RG++AEGIDF Y R + + G+P+
Sbjct: 697 CRGRMAEGIDFSDDYCRGIFLCGIPY 722
>gi|413917668|gb|AFW57600.1| hypothetical protein ZEAMMB73_931460 [Zea mays]
Length = 194
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/70 (95%), Positives = 69/70 (98%)
Query: 562 MQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
MQHKLVFIET DVVETTLALDNYRKACDCGRGA+FFSVARGKVAEGIDFDRHYGRLVIMF
Sbjct: 1 MQHKLVFIETPDVVETTLALDNYRKACDCGRGAIFFSVARGKVAEGIDFDRHYGRLVIMF 60
Query: 622 GVPFQYTLSK 631
GVPFQYTLS+
Sbjct: 61 GVPFQYTLSR 70
>gi|55925522|ref|NP_001007320.1| probable ATP-dependent RNA helicase DDX11 [Danio rerio]
gi|55250690|gb|AAH85645.1| Zgc:92172 [Danio rerio]
Length = 890
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 155/616 (25%), Positives = 258/616 (41%), Gaps = 90/616 (14%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E+ K+ YC+RT ++ + +H Q G A +++ +G SR+NLC+N V+
Sbjct: 203 EHVTKIYYCSRTHSQL------AQFVHEVQKSPYGDAVRLVNLG--SRQNLCINPEVVRL 254
Query: 125 ENRDSVDAAC---------RKRTASWVRALAAENPNIETCEF--FENYEKAASAAVLPPG 173
N ++ C +++ AS + + TC F FEN ++
Sbjct: 255 GNVQMMNERCLEMQKNKHEKRQKASDSESKRSRGLAKATCVFSRFENLMAMKDEVLVK-- 312
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP---KVAGIISKEMQKESV 230
V ++ L G++ CPY+ R + A VVV YQ LL K +GI K+ +
Sbjct: 313 VRDVEQLIQHGRETHTCPYYSTRMSIPAAQVVVLPYQSLLHASTRKASGI----KLKDQI 368
Query: 231 VVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE---YNR 287
V+ DEAHN+ + S + L R S+++Q ER+++ RL+A+ Y +
Sbjct: 369 VIIDEAHNLMDTISAIHSAEISGGQL---CRAHSQLSQYCERYRS----RLKAKNLMYIK 421
Query: 288 ----LVEGLALR-----GNLPIADAWLSNPALPS--DILKEAVPGNIRRAEHFLHVLRRL 336
++EGL G P + + L + D L +A NI + V +
Sbjct: 422 QILFVLEGLVRTLGGKVGQNPNTQSCQTGSELLTINDFLFKAQVDNI----NLFKVQKYF 477
Query: 337 VQYLRGRLETENVEK-EGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFL 395
+ + R EK EG + I H+ K R E L + TL+ TD
Sbjct: 478 EKSMISRKLCGFAEKYEG-----SGINTHSSSKNKENRRT-EGLWRFLQTLQSKPTDVSE 531
Query: 396 HIQTICD-------------FATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASL 442
+ D F + + I+I+ R + L+ +A++
Sbjct: 532 QQMAVEDKPIMASPMMLAESFLFALTNANKDGRIVIQ----RQACVAQSSLKFLLLNAAV 587
Query: 443 AVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT------RDCICPMVLT 496
+ ++V+I GT+ P+ + L F V+ + + + I P+VL
Sbjct: 588 HFAQILQECRAVIIAGGTMQPVADFKEQLLFSAGVTEERILEFSCGHVIPPENILPIVLC 647
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG 556
G + F R P + G++L + +IVP G+VCFF SY Y I+ W +G
Sbjct: 648 AGPSGQQLEFTFQTRDSPQMMEETGRVLSNLCNIVPGGVVCFFPSYEYEKRILGHWESTG 707
Query: 557 ILKEIMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGID 609
IL+ + K +F E + + L Y K C GA+ FSV GK++EGI+
Sbjct: 708 ILQRLQSKKKIFQEPKKASQVEQVLSEYSKCIQRCSNIGGGQTGALLFSVVGGKMSEGIN 767
Query: 610 FDRHYGRLVIMFGVPF 625
F GR ++M G+P+
Sbjct: 768 FSDDLGRCIVMVGMPY 783
>gi|350407679|ref|XP_003488158.1| PREDICTED: Fanconi anemia group J protein-like [Bombus impatiens]
Length = 959
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 165/685 (24%), Positives = 278/685 (40%), Gaps = 130/685 (18%)
Query: 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY----------VLSKPENP 67
Y Q + M +L + + +CLLE PTG+GKT+ALL + ++ S N
Sbjct: 217 YSCQVAVMNQLIQGCIKQENCLLESPTGSGKTLALLCGVLAWHDHHVGDCKSTTSHENNG 276
Query: 68 VKL------------------------------------IYCTRTVHEMEKTLAELKLLH 91
L Y TRT ++E+ + EL
Sbjct: 277 EDLPESSSTKCTDYCEDYDEEEDFEDSYEKSKKIKISKIFYGTRTHKQIEQVVREL---- 332
Query: 92 NYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPN 151
R K + I LSSR++ C+ E + C + N
Sbjct: 333 ----RKTSYKHKKMTI-LSSREHTCIQ------ETTKNKTELCND---------LLDTQN 372
Query: 152 IETCEFFENYEKAASA---AVLPPG---VYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+ C F+ K A V G ++ ++DL A GK +G CPYF AR + + A+++
Sbjct: 373 HKGCPFYNESNKKTIATFRGVKSRGLDDIWDIEDLVAIGKNEGLCPYFAARSLAEHADII 432
Query: 206 VYSYQYLLDPKVAGIISKEMQKE---SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRN 262
Y Y++DP I + MQ + V++ DEAHNI+++C E SVS R L
Sbjct: 433 FCPYNYIVDPD----IRESMQLDVTGHVIILDEAHNIEDICREVASVSFREDHLTAVASE 488
Query: 263 LSRINQEIERFKATDA---GRLRAEYNRLVEGLALR--GNLPIADAWLSNPALPSDILKE 317
+ ++ +A D+ G L+ +LV+ L + + LS+P L E
Sbjct: 489 CESLMKQ----RAADSEIYGTLQTYSLKLVDFLKITVVDKVGYNSDNLSSPYWTGAELLE 544
Query: 318 AVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYE 377
N+ ++ + + + N KE +F + K L
Sbjct: 545 LF--NMNGLNEAMYTM--FLGACNAAIADSNRAKEERRTFQKVLQPVISPTTKKL----- 595
Query: 378 RLHSLMLTLEITDTDEFLHIQTICDF-ATLVGTYTRGFSIIIEP--FDERMPHIPDPVLQ 434
+ LM T+ + + E+++ DF A + T + F E ++ L+
Sbjct: 596 -IEQLMFTIRMITSSEYMN-----DFRACVTETTVKDFKYATENTWLSSKVCTQRARTLK 649
Query: 435 LSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP-- 492
L C + + P+ + +S+++ SGTLSP +F + SF L + P
Sbjct: 650 LLCMNPGVTFAPLARQARSIILASGTLSPT------ASFQSELGTSFAHVLNTGHVIPKE 703
Query: 493 ----MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ + +G +++ + + + G +L+++ VP GI+CFF SY+ M
Sbjct: 704 QVYAICVPQGPNEVKLRANYQSVNSWAFQDELGAVLLDVCESVPHGILCFFSSYNVMHTQ 763
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGR------GAVFFSVA 600
+ W + I +I K +FIE + + + YR+ + G+ GA+F +V
Sbjct: 764 MQRWISNSIWTKITSVKQIFIEPRYGGDLKDIMYEYRQVIEQTSGKRRGKITGALFLAVF 823
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPF 625
RGKVAEGIDF + R VI G+P+
Sbjct: 824 RGKVAEGIDFKDNEARCVITVGIPY 848
>gi|268566755|ref|XP_002639805.1| C. briggsae CBR-BCH-1 protein [Caenorhabditis briggsae]
gi|229891627|sp|A8WS58.1|RTEL1_CAEBR RecName: Full=Regulator of telomere elongation helicase 1 homolog
Length = 994
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 165/704 (23%), Positives = 297/704 (42%), Gaps = 142/704 (20%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL----SK 63
++ FP++ Y Q +M + LD K LE PTGTGKT++LL ++V SK
Sbjct: 17 TSIKFPFEP-YECQRIFMKNVIDVLDMKLDAALESPTGTGKTLSLLCSTLAWVQKLKESK 75
Query: 64 P-----------------ENPVK------LIYCTRTVHEMEKTLAELKLLHNYQTRHLGP 100
P E+ +K + Y +RT ++E+ + EL +T +
Sbjct: 76 PMDFATWQSSGAGGAEKTEDKLKNSFIPTIFYASRTHSQLEQVVHELN-----RTEYKWV 130
Query: 101 AAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFEN 160
IL SR++ C+N +V + + R A R L ++ +C ++
Sbjct: 131 KTTILG----SREHFCINQKVKKIKESN--------RQAHVCRGLVSK----RSCHYYNK 174
Query: 161 YEKAAS---AAVLPPG-VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPK 216
++ + +L G ++D G Q CPYF++R + A +++ Y Y++DPK
Sbjct: 175 FDALTTDKANEILEKGEAMDIEDFVKIGTQNSICPYFMSRQRSETAELILLPYNYIIDPK 234
Query: 217 VAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI---------- 266
+ ++ K S+V+FDEAHN++++C S + ++ L ++
Sbjct: 235 MRRRYKLDL-KNSIVIFDEAHNLESICESNASAELSSTSIALCIEELKKVLALLVEEEEN 293
Query: 267 -----NQEIERFKATDAG-------RLRAE---------------YNRLVEGLALRGNLP 299
+ E E F LR E +++L E L+ ++P
Sbjct: 294 AREEADNETEAFGTQKIDLTKKLIENLRTEDLMALLEKVFTLEENFDKLFESDQLK-SVP 352
Query: 300 IADAWLSNPALPSDIL-KEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGP---- 354
D S+ A+ + L GN E F+ VLR + YL + E ++ ++G
Sbjct: 353 PLDGKASDGAILLETLANSGCDGN--SVERFVDVLRDAISYLLSKNEEVSLTEKGDGMES 410
Query: 355 -VSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
F+ SI + H+ + + DE + + D AT+ R
Sbjct: 411 VADFLLSIYS---------------THAQEVAAAV--GDEHIKLADRVDPATVA----RN 449
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPID--LYPRL 470
+ I ++ V++ C AS++++ + R ++V++ SGTLSPI Y
Sbjct: 450 CKLYIRKDSGKL------VIKYFCFQASISMRMLKMRGVRNVLLASGTLSPIQAFTYNMG 503
Query: 471 LNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSI 530
LNF ++ + +L + + ++TRG V + F R + + G+ L+ ++
Sbjct: 504 LNFGAILEN--EHALKQVPVLTSIVTRGKHGGLVGS-FQNRKNIEYVSDVGESLIRVMET 560
Query: 531 VPDGIVCFFVSYSYMDEIIATWNDSG---------ILKEIMQHKLVFIETQDVVETTLAL 581
P G++ FF SYS MDE++ W + +++ + K + +E + +
Sbjct: 561 TPQGVLVFFSSYSQMDELVEVWKKTKRGASDSPETFWEKMEKTKKIAVEPRAKEQLAAVR 620
Query: 582 DNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y + GA +V RGKV+EGIDF R VI+ G+P+
Sbjct: 621 LRYTQGVSEPHGAALLAVCRGKVSEGIDFCDAESRAVIIVGIPY 664
>gi|332025865|gb|EGI66021.1| Fanconi anemia group J protein-like protein [Acromyrmex echinatior]
Length = 653
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 132/588 (22%), Positives = 253/588 (43%), Gaps = 95/588 (16%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ Y +RT ++E+ + E K + K + I LSSRK C+ E
Sbjct: 29 KIFYGSRTHGQLEQVVKEFK--------KTAYSHKRMTI-LSSRKKTCIQ------ETDK 73
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFF-ENYEKAASAAVLPPGVYTLQDLRAFGKQQ 187
+ D C + ++A + C+++ ++ +K + + ++DL + GK+
Sbjct: 74 NKDKLCNELLDPRLKA--------KKCKYYNDDAKKKPTIFSKMDTPWDIEDLVSLGKEV 125
Query: 188 GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEAL 247
G CPYF AR ++ A ++ Y Y+L P++ + + + ++V+ DEAHNI+N+C EA
Sbjct: 126 GTCPYFGARVLMADAEIIFCPYNYILYPEIRDSMQINL-RGNIVILDEAHNIENICREAA 184
Query: 248 SVSVRRQTLEGATRNLSR-INQEIERFKATDAGRLRAEYNRLVEGLALRGN---LPIADA 303
+V +R L A + ++ + + + + + + ++ N ++
Sbjct: 185 TVDIRDDKLLIAVKECKHFLDMDYKSITYATIHEYLTDLIKFLNDIEVKDNDRNEMVSKH 244
Query: 304 WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGP--------- 354
W+ A+ ++L G R F+ + + + ++ EN +K P
Sbjct: 245 WVG--AVFRELLNVNEIG-CPRFPDFIAASKIAIDDFKQNMKEENSKKINPTISQESKKL 301
Query: 355 ---VSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYT 411
+ F + A +D R C I +T+EF+ T D+ + T
Sbjct: 302 LEYLCFGMQMIASDKVDD--YRMC------------IVETNEFIEKVTENDWFSTTKKLT 347
Query: 412 RGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLL 471
+ ++I L C + ++ +P+ +SV++ SGTL+P +
Sbjct: 348 KVRTMI-----------------LKCMNPAIVFEPLAHEVRSVILASGTLTPT------V 384
Query: 472 NFHPVVSRSFKMSLTRDCICPM------VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLV 525
++ + F + D I P + +G P+ +D + G L++
Sbjct: 385 SYQSELGTKFSYIINPDHIIPKNQLYIRYIPQGLSGKPLKATYDQVNTWAFQDELGNLIL 444
Query: 526 EMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYR 585
++ VP G++CFF SY M+ I W ++GI ++ K +F+E + + + YR
Sbjct: 445 QVCDAVPFGVLCFFSSYKAMNTIHNRWRNNGIWDKLSNLKTIFVEPKYEKDLNPVMKAYR 504
Query: 586 KACDCG--------RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + RGA+FF+V R KVAEGIDF + R V+ G+P+
Sbjct: 505 RVIEESLSEQYQTVRGAIFFAVFRAKVAEGIDFSDNEARCVLAIGIPY 552
>gi|440633923|gb|ELR03842.1| hypothetical protein GMDG_01371 [Geomyces destructans 20631-21]
Length = 874
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 146/591 (24%), Positives = 254/591 (42%), Gaps = 65/591 (10%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIG-------LSSRKNLCVNSR 120
+K+ YC+RT ++ + + EL+ + PA +G L SRKNLC+N
Sbjct: 220 IKIFYCSRTHSQLTQFINELRRVKIPPALQPEPAPVKPLLGEEFKHLTLGSRKNLCINPS 279
Query: 121 VLAAENRDSVDAACR--KRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
V + +++ C +++ + PN + ++ A A + ++
Sbjct: 280 VNKLRSATAINERCMELQQSGTATDKKCCFLPNQQNQPLVNDFRDHALATI-----RDIE 334
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
+L GK+ CPY+ +R ++ A +V Y LL + + K VV+ DEAHN
Sbjct: 335 ELGDLGKEMKICPYYASRSAIKPAEIVTLPYPLLLQKSAREALGVSV-KGHVVIVDEAHN 393
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---AEYNRLVEGLA-- 293
+ + ++V +L R+ ++I Q ++RF+ G+ R A+ RL++ LA
Sbjct: 394 LMDAIAGIYGITV---SLSQLKRSRAQIGQYLQRFRNKLKGKNRVYVAQVVRLIDSLAQF 450
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
L G + + P S++L I L +L++YL+ VE G
Sbjct: 451 LDGKVGQKGEMVVEP---SELLVGKGVDQIN--------LYKLMRYLQDSKLARKVE--G 497
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
+ F A G R + TL+ HIQ++ L G
Sbjct: 498 YIIFAEGAAADNGNPAAKARKPDATSEAATPTLQ--------HIQSL--LVALTNPSKEG 547
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLN 472
F + P D VL+ D + + + ++V++ GT+SP+ D LL+
Sbjct: 548 -----RLFYAKDPETSDIVLKYMLLDPTHHFQEIVSEARAVILAGGTMSPMADYTSHLLS 602
Query: 473 FHP---VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSD---PGVARNYGKLLVE 526
+ P + + S + ++ + L++G P F R+ + G+ ++
Sbjct: 603 YLPAERITTLSCGHVIPKENLLAWTLSKGPTGKPFEFTFSKRAGREGEEMIDELGRAVLN 662
Query: 527 MVSIVPDGIVCFFVSYSYMDEIIATW------NDSGILKEIMQHKLVFIETQDV-VETTL 579
+ +IVPDGIV FF SYSY+D +I W I + + + K +F E +D V
Sbjct: 663 ICTIVPDGIVVFFPSYSYLDTVIKRWEVILEPGRPSIWERLGKRKALFREAKDAKVGAEY 722
Query: 580 ALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
L Y KA D +G + SV GK++EGI+F GR V++ G+P+ +S
Sbjct: 723 VLTEYAKAIDGNQGGLLLSVVGGKMSEGINFSDRLGRCVVIVGLPYPNIMS 773
>gi|145354926|ref|XP_001421725.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581963|gb|ABP00019.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 749
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 164/684 (23%), Positives = 274/684 (40%), Gaps = 122/684 (17%)
Query: 9 TVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS------ 62
TV FP++ Y Q +M + A+ H LLE PTGTGKT+ LL+ ++V S
Sbjct: 22 TVDFPFE-AYDNQLVFMEKALLAMCRGEHALLESPTGTGKTLCLLASALAFVRSEGRARK 80
Query: 63 ------------------------------------KPENPVKLIYCTRTVHEMEKTLAE 86
+ PV ++Y TRT ++++ + E
Sbjct: 81 RKFREEVRDGRGGAGDADDVAGTSGREFVDDVEKKERTRAPV-IVYATRTHSQVDQVVRE 139
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
LKL + TR A L+SR++ C V A + + R A V+
Sbjct: 140 LKLF-DSTTR---------ATTLASRRHACARDDVRALNGTEQ-----KNRCAKLVQQ-- 182
Query: 147 AENPNIETCEFFENYEKAASAA-----VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
+ C ++A + GV ++DL + K +G CP++LAR
Sbjct: 183 ------QKCGAKVTLDRALQGRDGRFDLFSDGVQDIEDLVSKAKARGPCPFYLARTKCAE 236
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
A ++ Y YLLD V + + +V++ DEAHN+++ +++S S+ L A +
Sbjct: 237 AEIIFMPYNYLLDESVRKGLEIAWEN-AVIIVDEAHNLESSASDSMSYSLTAAKLAKAIK 295
Query: 262 NLSR-----INQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILK 316
R + E + DA + E +++ G+ ++ L I +
Sbjct: 296 ESERAYETKLTLEDTSGEGIDAAAFKGEDFKMLTGVLVQ-----------LEGLLDSICR 344
Query: 317 EAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCY 376
EA + E L E+ G +F+ I A I T
Sbjct: 345 EAAKAPNAKHEGGLG------------------ERIGDGAFIYVILAELNITADTYEHIT 386
Query: 377 ERLHSLMLTLEITD------TDEFLHIQTICDFAT--LVGTYTRGFSIIIEPFDERMPHI 428
+ + S T+++ T + I +F V Y + F + P E+
Sbjct: 387 KLIKSASRTVQLGSDFMAQPTQNETPLMEIGNFIERIFVHRYEQYFVTRLGPDMEKFKTS 446
Query: 429 ----PDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKM 483
P L C L +K + D+ + ++ SGTLSP++ + L V
Sbjct: 447 NRARAGPTLSYWCFFPGLCLKALIDKGVGTFLLASGTLSPMESFASELALDFPVRLENPH 506
Query: 484 SLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYS 543
+ R+ + V+T G + +++ F R G +++ IVPDG++ FF SY
Sbjct: 507 VIKRNQVWGGVVTHGPNNGVLNSSFRFRDTREYKTEIGSVILSTARIVPDGLLVFFPSYG 566
Query: 544 YMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKAC--DCGRGAVFFSVAR 601
M + W +G+ ++ +K +E + E D+Y KA D RGA FF+V R
Sbjct: 567 VMHSCVNHWRSTGLWNQLETNKTCLVEPSNADEFHACYDSYNKALEEDSRRGAAFFAVCR 626
Query: 602 GKVAEGIDFDRHYGRLVIMFGVPF 625
GK++EGIDF R VI+ G+P+
Sbjct: 627 GKLSEGIDFADKACRGVILTGIPY 650
>gi|195340550|ref|XP_002036876.1| GM12432 [Drosophila sechellia]
gi|229891628|sp|B4I0K4.1|RTEL1_DROSE RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|194130992|gb|EDW53035.1| GM12432 [Drosophila sechellia]
Length = 966
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 149/679 (21%), Positives = 288/679 (42%), Gaps = 120/679 (17%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENP 67
+ V+FP++ YP Q +YM ++ L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQSEH 67
Query: 68 V---------------------------------------KLIYCTRTVHEMEKTLAELK 88
K+IY +RT ++ + + ELK
Sbjct: 68 QMQMVKMEKADFSGIGGGAPGGDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAMRELK 127
Query: 89 LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAE 148
+T + A + ++ L SR LC++ V+ + C+ R S
Sbjct: 128 -----RTAY----ANMRSVVLGSRDQLCIHPEVMRELGNSNKTNMCKLRVHS-------- 170
Query: 149 NPNIETCEFFENYEKAASAAVL-PPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVY 207
+TC F E L P + ++DL G++ CPYF +R + + AN +
Sbjct: 171 ----KTCSFQMRVESRKDHPDLRGPTIMDIEDLVKVGQRLKICPYFASRELAR-ANKIEL 225
Query: 208 SYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRIN 267
++V+ DEAHNI+ +C E SV ++ + +++ I
Sbjct: 226 G-------------------NTIVILDEAHNIEKICEEYASVQIKSSDVAMTIEDITHIR 266
Query: 268 QEIERFKATD-AGRLRAEYN--------RLVEGLALRGNLPIADAWLSNPALPSDILKEA 318
Q ++ D AG ++ ++ L + + D + P+ ++ E
Sbjct: 267 QVFASGESQDMAGDEPKDFTLDDLTLLKEMLLELEKAIDAVVVDNAVDGTTFPASMMYEL 326
Query: 319 VP------GNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA---SITAHAGIDQ 369
+ GN+ + +L +LVQYL + ++ K G + ++ +I D
Sbjct: 327 LGKANFTYGNV---ASIISLLDKLVQYLLVASQQMSIRKGGTFTLLSDLLTIVFANKEDV 383
Query: 370 KTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIP 429
+ + ++H L+ +E A G + +I ++ I
Sbjct: 384 MSKVYASFKVHVLV--------EESKQGHGKQQGAKQQGGWLGKGTIAAATGSSKVAKI- 434
Query: 430 DPVLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LT 486
+ C + ++ + + + +SV++TSGTL+P L P + V++ + +
Sbjct: 435 ---INFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVD 489
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
+ + ++ G D+ + + + R +P + G+ ++ + IVPDG++ FF SY ++
Sbjct: 490 QSQVYVKIIGTGPDRQQLISNYANRDNPKYVSSLGQTILNVARIVPDGLLVFFPSYPMLN 549
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAE 606
+ + W SG+ +I K +F+E + + T ++ + +A +GAVF +V RGKV+E
Sbjct: 550 KCVDAWQASGLWADISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSE 609
Query: 607 GIDFDRHYGRLVIMFGVPF 625
G+DF GR VI+ G+PF
Sbjct: 610 GLDFADRNGRAVIITGLPF 628
>gi|394994901|gb|AFN42925.1| XPD1 protein, partial [Plasmodium falciparum]
Length = 437
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 136/261 (52%), Gaps = 61/261 (23%)
Query: 96 RHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA--------- 146
+ G ++ILAIG+S+R+ +C+N +VL R+ +D CRK TA+++R
Sbjct: 168 KEFGENSEILAIGISARRCMCINDKVLLKHEREKIDEECRKLTATFIREKKYINNKIDNE 227
Query: 147 -----------------------------------AENPNIETCEFFENYEKAASAAVLP 171
E NI C ++ENY+K ++
Sbjct: 228 IYHPNVDKISDFILRNRHHLDIEDYFDIYNSRNSLEEYDNIGLCGYYENYKKEFLYDLIK 287
Query: 172 PGVYTLQDLRAFGKQQG--------WCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS- 222
PGVYT++DL+ K CPYF A+ +++ + V++ +YQY++ PKV+ +
Sbjct: 288 PGVYTIEDLKVLCKNYKNKENVNVPICPYFCAKKIIEISKVIILNYQYVIVPKVSKALFS 347
Query: 223 -KEMQKE-------SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
K+M K ++VFDEAHNID+VC+EALSV++ R L A+ N++++ ++IE+ K
Sbjct: 348 WKDMNKNVHLKNKNDIIVFDEAHNIDSVCLEALSVNIDRNILNKASMNITKLMKKIEQSK 407
Query: 275 ATDAGRLRAEYNRLVEGLALR 295
+ +L+ E N+++E + L+
Sbjct: 408 MLNEQKLKEECNKILEKIKLQ 428
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
++F L+DV ++FPYD IYPEQY+YM LK+ LD++GHC+LEMPTGTGKT+A+ SLITSY
Sbjct: 2 VVFNLDDVEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ 61
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ 94
K + K I+CTRTV EMEK+L ELK + Y+
Sbjct: 62 YHKKDEG-KFIFCTRTVAEMEKSLIELKKVIQYR 94
>gi|297272722|ref|XP_002808171.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein-like
[Macaca mulatta]
Length = 1151
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 174/703 (24%), Positives = 282/703 (40%), Gaps = 101/703 (14%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V +YFPY YP Q + M + R L++K HCLLE PTG+GK++ALL ++ S
Sbjct: 8 YTIGGVKIYFPY-KAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66
Query: 63 KPENPVKL---------IYCTRTVHEMEKTLAELK--LLHNYQ--------------TRH 97
E P + C T H + T ++ H++ T
Sbjct: 67 LSEKPADEGISGKTEVPLSCCCTCHSKDFTNNDMNQGTSHHFNYPSTPPSERKSTSLTCQ 126
Query: 98 LGPAAKILAIGLSSRKNLCV-----------NSRVLAAE----------------NRDS- 129
P LA LS++K + R+ E N D+
Sbjct: 127 DSPEKTTLAAKLSAKKQASIYRDENDDFQVEKKRIRPLETTQQIRKRHCFGTEVHNLDAK 186
Query: 130 VDAACRKRTASWVRALAAENPNI-ETCEFFENYEKAASAAVLPP-----GVYTLQDLRAF 183
VD+ + S + + +P ++C F+ K + L + +++L +
Sbjct: 187 VDSGKTVKLNSPSGKINSFSPRKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSL 246
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 247 GKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCA 305
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLV-------EGLALR 295
E+ S S+ L A L S +N I R D LRA L+ E L R
Sbjct: 306 RESASYSITEVQLRFARDELDSMVNNNIRR---KDHEPLRAVCYSLINWLEANSEYLVER 362
Query: 296 GNLPIADAWLSNPALPS----DILKEAVPGNIRRAEHFLHVLRR--LVQYLRGRLETENV 349
W N L + I P I + HF VL++ + + G+ E
Sbjct: 363 DYESACKIWSGNEMLLNLHKMGITTATFP--ILQG-HFSAVLQKEEKISPIYGKEEA--- 416
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
+E P+ I+A I L+ + L L D + IQ + +
Sbjct: 417 -REVPI-----ISASTQI---MLKGLFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDI 467
Query: 410 YTRGFSIIIEPFDERMPHIPDPV--LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY 467
+ ++I P ++++ V L C + ++A + + Q++V+TSGTLSP+ +
Sbjct: 468 SDKN-GLLILPKNKKLSRQKTAVRVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSF 526
Query: 468 PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEM 527
L V + + + G + F G LL+ +
Sbjct: 527 SSELGVTFTVQLEANHVIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSV 586
Query: 528 VSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA--LDNYR 585
V GI+CF SY ++++ W +G+ + K V +E Q +T L Y
Sbjct: 587 CQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYY 646
Query: 586 KACDCG---RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
A GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 647 DAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPF 689
>gi|84997393|ref|XP_953418.1| helicase [Theileria annulata strain Ankara]
gi|65304414|emb|CAI76793.1| helicase, putative [Theileria annulata]
Length = 951
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 148/635 (23%), Positives = 274/635 (43%), Gaps = 97/635 (15%)
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
KPE +K++Y +RT ++++ + E++ + +L +L L+SR LC+N L
Sbjct: 132 KPER-IKIMYASRTHSQLKQVVGEVEKTEYSRQFNLRGLKGVL---LASRDQLCINP--L 185
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP-PGVYTLQDLR 181
+ V A++ +AL E CE+F ++ + ++D+
Sbjct: 186 RGKMTGEV-------LANFCKALVQE----RKCEYFNTMRGDKNSKQFQFERLMDIEDMV 234
Query: 182 AFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
GK + +CPYF + + A++++ Y YLL P + + ++ ++S++V DEAHN +
Sbjct: 235 ETGKNKHFCPYFSVKEGQEHADLILLPYNYLLSPDIRDAVDIDI-RDSILVIDEAHNAEQ 293
Query: 242 VCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIA 301
V E S +++ + L R + + + D R+ ++ +L
Sbjct: 294 VAEEGASFEIKQTDIGKYIETLKRFGIFYKDYISEDPTRINENEIDFSILNSIGLSLQYT 353
Query: 302 DAWLSNPALPS----DILKEAVPGNIRR-------AEHFLHVLRRLVQYLRGRLETEN-- 348
D +L+ L + DI +++ R +H ++ + ++ Y+ G++E +
Sbjct: 354 DEFLTGITLLNNESFDIRRDSKDHIGTRWVIKELNKDHLVYGGQSVLDYMNGKMEYDKLK 413
Query: 349 -VEKEGPVSFVASITAHAGIDQKTLRFCYERLHS-------------------LMLTLEI 388
V+ E ++ V I I+ +++ +S ++L+ E+
Sbjct: 414 EVDVENTINRVVVILTKGTIEDSKHEEVFKKHYSDRTLKEDCILLTMLRKFISILLSPEV 473
Query: 389 TDTDEFLHIQTICD--FATLVGT---------YTRGFSIIIEPFD-----ERMPHIPDPV 432
D ++ ++ D F L T + + F F+ E I V
Sbjct: 474 NDYPQYYNVIITNDERFEKLKKTNMDDIKSYGWNKKFKRDESRFELIKRREDNTEIIPKV 533
Query: 433 LQLSCHDASLAVKPVFDRFQ-----SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTR 487
C L P F R + S+++TSGTL P+D+ R L V F + L
Sbjct: 534 FWFKC----LQPVPTFVRLKNAGARSIILTSGTLGPLDVLERHLGGGQV---KFDIKLQN 586
Query: 488 D-CICPMVLTRGS------DQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ I P + GS D +S+ F+ R+ G +V V VP G++ FF
Sbjct: 587 EHVIDPSRVWVGSISGNAEDPNMLSSTFNTRNKMNYITELGNAVVSFVKNVPAGVLVFFC 646
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQ--------DVVETTLA--LDNYRKACDC 590
SY+ M+ + W GI +I +K V++E + DVV T + Y++ D
Sbjct: 647 SYNVMNYTTSVWKKIGIYSKIEMYKKVYLEARPVENPEDSDVVPVTTMDIFNRYKENIDK 706
Query: 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
G G+VFF++ RG++AEGIDF Y R + + G+P+
Sbjct: 707 GNGSVFFAICRGRLAEGIDFSDDYCRGIFVCGIPY 741
>gi|426241833|ref|XP_004014789.1| PREDICTED: regulator of telomere elongation helicase 1 [Ovis aries]
Length = 1305
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 169/706 (23%), Positives = 296/706 (41%), Gaps = 112/706 (15%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLS---------- 54
L+ VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LKGVTVDFPF-QPYKCQEEYMSKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWREHLR 64
Query: 55 --------------------LITSYVLSKPENPV--------KLIYCTRTVHEMEKTLAE 86
+ S+ + PE V K+IY +RT ++ + ++E
Sbjct: 65 DAVSARRIAERASGELFPDRTLASWGNAIPEGDVPACYTDIPKIIYASRTHSQLTQVISE 124
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW----- 141
L+ +Y+ R L SR+ LC++ V E+ CR++ A
Sbjct: 125 LRNT-SYRPR---------VCVLGSREQLCIHPEVKKQESNHMQVHLCRRKVAGRSCHFY 174
Query: 142 --VRALAAENPNIETCE--------------FFENYE------KAASAAVLPPGVYTLQD 179
V A P++ + F+ + E K+ + P + ++D
Sbjct: 175 NNVVYCGALRPSVSMLQGVDCGCLRGSGLAAFYTSLELRCLSEKSLEQELATP-ILDIED 233
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L G + CPY+L+R++ Q A+++ Y YLLD K S ++ K +VV+FDEAHN+
Sbjct: 234 LVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHSIDL-KGTVVIFDEAHNV 292
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIE-RFKATDAGRLRAEYNRLVEGLALRGNL 298
+ +C EA S + T L I+Q +E + K L E++ G L NL
Sbjct: 293 EKMCEEAASFDL---TPHDVASGLDVIDQVLEEQTKVAQQAELHPEFSADSAGSGL--NL 347
Query: 299 PIAD-AWLSNPALPSDILKEAV--PGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPV 355
+ D A L L + +AV PG + L + +T+ +
Sbjct: 348 ELEDLAKLKMILLRLEGAIDAVELPGGNSGVTKPGSYIFELFAEAQITFQTKGCILDSLD 407
Query: 356 SFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFS 415
+ + AG+ T ++L ++ + D+ E D +VG ++ +
Sbjct: 408 QLIQHLAGRAGLFTNTAGL--QKLADIIQIVFSVDSAEG-------DPVPMVGLASQSYK 458
Query: 416 III-------------EPFDERMPHIPDPVLQLSCHDASLAVKP-VFDRFQSVVITSGTL 461
+ I + ++ P VL C +++ V +++++TSGTL
Sbjct: 459 VHIHLDAGHRRTAQRSDVWNTTAARKPGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTL 518
Query: 462 SPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYG 521
+P+ + + V +++ I V+ +G D +S+ FD R + G
Sbjct: 519 APMASFSLEMQIPFPVCLENPHVISQHQIWVGVIPKGPDGAQLSSAFDRRFSDECLSSLG 578
Query: 522 KLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLAL 581
K+L + +VP G++ FF SY M++ + W +++ K +F+E + + +
Sbjct: 579 KVLSNISRVVPHGLLVFFPSYPVMEKSLEFWRAHDFTRKLEVRKPLFVEPRSKGGFSEVM 638
Query: 582 DNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + R A GA+F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 639 EAFYARVAAPESSGAIFLAVCRGKASEGLDFADMNGRGVIVTGLPY 684
>gi|449448180|ref|XP_004141844.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Cucumis sativus]
Length = 914
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 155/609 (25%), Positives = 243/609 (39%), Gaps = 93/609 (15%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
+K+ +C+RT ++ + + EL R A+++ I L SRK C+N VL +
Sbjct: 211 LKVYFCSRTHSQLSQFIREL--------RKTVFASELNVICLGSRKIFCINEEVLKLGSA 262
Query: 128 DSVDAAC----RKRTA--SWVRALAAENPNIET-----CEFFEN--YEKAASAAVLPPGV 174
++ C +K+T S + LA T C N +K + +
Sbjct: 263 SHINEQCLELQKKKTTETSKAKKLAGAGKMSRTKASSGCPMLRNPKLQKNFRSQISQREA 322
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
++DL G++ G CPY+ +R +VQ A+++V YQ LL + + K S+V+ D
Sbjct: 323 LDIEDLIHLGRKVGTCPYYGSRSLVQGADLIVLPYQSLLSKSSRESLGLVL-KNSIVIID 381
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERF-KATDAGRLRAEYNRLVEGLA 293
EAHN+ + I V LE ++ R ERF G R ++ A
Sbjct: 382 EAHNLADSLISMHDSKVSYSQLENVHHHMERY---FERFCSLLGPGNRRYIQTLIIVTRA 438
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLR-------RLVQYLRGRLET 346
L L I +A P K FL L +L+QY++
Sbjct: 439 LLKLLHIEEASYVEPCQNDSTGKNGALDYSMAINDFLFSLNIDNINFVKLLQYIKESNIM 498
Query: 347 ENVEKEGPVSFVASITAHAGIDQKTLRFCYER---------LHSLMLTLEITDTDEFLHI 397
V G +I + K CYE+ L ++L+L D D
Sbjct: 499 HKVSGYGE----RTIKPRNDLGIKPSGECYEKESTLSSFRALADMLLSLINFDGDG---- 550
Query: 398 QTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVIT 457
+ I G RG I R I V+ D+ +VV+
Sbjct: 551 KMIISKNRPTGLGERGGCIKFVKL--RGDKIFSEVV---------------DQAHAVVLA 593
Query: 458 SGTLSPID---------LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKF 508
GTL PI+ L P LNF S + + I PM ++ G +
Sbjct: 594 GGTLQPIEETRERLFPWLPPSQLNFF-----SCSHIVPPESILPMAVSSGPSGQLFDFSY 648
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
+ RS + + G LL +V++VP+GIV FF S+ Y +++ W SGIL IM+ K +F
Sbjct: 649 NRRSSSAIVKELGLLLCNIVTVVPEGIVVFFSSFDYEEQVYGLWKTSGILDRIMKKKRIF 708
Query: 569 IETQDVVETTLALDNYRKACDC------------GRGAVFFSVARGKVAEGIDFDRHYGR 616
E + + L Y++ D GAV F+V GK++EGI+ GR
Sbjct: 709 REPRKNTDVESVLKEYKENIDALSKKDPKQNILSTSGAVLFAVVGGKISEGINLSDGMGR 768
Query: 617 LVIMFGVPF 625
++M G+P+
Sbjct: 769 CIVMVGLPY 777
>gi|19115889|ref|NP_594977.1| ATP-dependent DNA helicase Chl1 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74581973|sp|O14147.1|CHL1_SCHPO RecName: Full=ATP-dependent RNA helicase chl1; AltName:
Full=Chromosome loss protein 1
gi|2408082|emb|CAB16287.1| ATP-dependent DNA helicase Chl1 (predicted) [Schizosaccharomyces
pombe]
Length = 844
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 137/597 (22%), Positives = 261/597 (43%), Gaps = 100/597 (16%)
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
KP K+ + +RT ++++ + E+K L+N QT + I + L+SRKNLC+N+ V
Sbjct: 207 KPPIVQKIYFTSRTHSQLQQLVQEIKKLNN-QTF----STPIRVVSLASRKNLCINNEVR 261
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
+++ C + S A + P ++ ++ A A ++ +++L
Sbjct: 262 KLRPTSALNEKCIELQGS-----AHKCPFLQDNTQLWDFRDEALAEIM-----DIEELVE 311
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN-IDN 241
G++ CPY+ R V A +V Y LL ++ + K+++ + DEAHN ID
Sbjct: 312 LGQRLKVCPYYGTREAVDSAQIVTLPYPLLLQESARNALNLTL-KDNICIIDEAHNLIDA 370
Query: 242 VC-IEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
+C + + S+S R+ + +++ Q RF+ G R +L++
Sbjct: 371 ICSMHSSSISFRQVCIAE-----TQLQQYFLRFEKRLNGNNRMHIKQLIK---------- 415
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
V+ L + LET K V V S
Sbjct: 416 -------------------------------VVYNLKSFFLNCLETNTNSK---VINVDS 441
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLH------IQTICD-----FATLVGT 409
+ G DQ L E L+ L ++ +++H ++++ D F+ G
Sbjct: 442 LLVSNGADQINLHHLSEYLNVSKLARKVDGYTKYMHSLGTQELESLNDLRSERFSNGNGY 501
Query: 410 YTRGFSIIIEPFDERMPHIPDPV----------------LQLSCHDASLAVKPVFDRFQS 453
++ ++ + + +I +P L+ D S V+ + ++ +S
Sbjct: 502 EEDPYTPVLMQLESFLLNIANPAPEGKLFYEKQTGDNPYLKYLLLDPSKHVEILTEQCRS 561
Query: 454 VVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTR----DCICPMVLTRGSDQLPVSTKFD 509
V + GT+SPID + LL F SR S + I +++++G +P
Sbjct: 562 VNLAGGTMSPIDDFITLL-FSDEQSRILPFSCDHIVPPENITTILVSQGPAGVPFEFTHK 620
Query: 510 MRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFI 569
+ D + ++ G+ +SI+PDG+V FF S++++ + + W +GI + K +FI
Sbjct: 621 RKDDENLLKDLGRTFQNFISIIPDGVVVFFPSFAFLQQAVKVWEMNGITNRLNAKKPLFI 680
Query: 570 ETQDVVETTL-ALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
E++D + L ++Y+++ D G + FSV G+++EGI+F GR V++ G+PF
Sbjct: 681 ESKDFGDNPLDTFEHYKQSVDAGLSGMLFSVIGGRLSEGINFSDKLGRAVMVVGMPF 737
>gi|384246051|gb|EIE19542.1| DNA repair helicase [Coccomyxa subellipsoidea C-169]
Length = 1621
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 155/666 (23%), Positives = 261/666 (39%), Gaps = 125/666 (18%)
Query: 37 HCLLEMPTGTGKTIALLSLITSYV------------------------LSKPEN-----P 67
+ LLE PTG+GKT++LL S+ PE P
Sbjct: 13 NALLEAPTGSGKTLSLLCSALSWQRKLKQEGYSEAWEGRPNIPDDGQGQETPEGKSVKTP 72
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKIL-------AIGLSSRKNLCVNSR 120
+ I CT + + R P +I I +SR + CV+S
Sbjct: 73 PEPISCTPPGSGSAGSTEGEVTPNGAPPRE--PLPRIFYATRTHSQIAQASRSHYCVHSG 130
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASA-AVLPPGVYTLQD 179
V N VD C K +C +F N K + A P V+ ++D
Sbjct: 131 VSKKPN---VDEECEKLLED------------RSCRYFNNLPKVLNGLATYVPQVHDIED 175
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L GK+ CPYF+AR + + A ++ Y YL+DP + + +Q +V++FDEAHNI
Sbjct: 176 LVQVGKEIKACPYFVARKIAEHAELLFCPYNYLIDPVIRSSMGINIQ-HAVIIFDEAHNI 234
Query: 240 DNV------------------------CIEALSVSVRRQTLEGATRNLSRINQEIERFKA 275
+++ C+EA S + + R + + + ER
Sbjct: 235 EDISRDAASVEMERASMVDVQKAFEYKCLEADSREIYGPLADAFGRFANWLKERCERPDV 294
Query: 276 TDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRR 335
Y + GL +R L A + KE V LH L
Sbjct: 295 RKQQGAGQRYEGITSGLQMREELEEAG-----------LGKEQV--------DLLHEL-- 333
Query: 336 LVQYLRGRLETEN---------VEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386
Y++ R E + E++G A + +K F + L+ L
Sbjct: 334 ---YVKARAEEQKKEEPPAPALAEEDGASEHQLQNVASSQAKKKGAGFALGQTSRLLTIL 390
Query: 387 EITDTDEFLHIQTICDFATLVGTYTRG---FSIIIEPFDERMPHIPDPVLQ--LSCHDAS 441
+ ++ + D+ + + R D+ + LQ L C + +
Sbjct: 391 NL------MYSSNVSDYRLALQRWYRSSQPRRRGRRREDDEEDEVAGWALQFCLWCLNPA 444
Query: 442 LAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFH-PVVSRSFKMSLTRDCICPMVLTRGSD 500
+A + +S+++TSGTLSP+D + L+ PV + + R + + G D
Sbjct: 445 VAFHSIAAAARSIILTSGTLSPLDSFASELDTSFPVRFEAPHVINARLQVWAGSICAGPD 504
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ ++ ++ P + G + + IVPDG++ F SY +D ++ W +G+ +
Sbjct: 505 DVKIAATYEHSLKPDFQDSVGASIAAIAGIVPDGLLVFLPSYVMLDRLMERWKVTGVWAQ 564
Query: 561 IMQHKLVFIETQDVVETTLA-LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVI 619
+ Q K + E + + A + ++ A GRGA+FF++ RGKV+EG+DF R VI
Sbjct: 565 LQQTKAIVCEPRGTGDAFDAVMSDFYTAIREGRGAIFFAICRGKVSEGLDFTDKNARAVI 624
Query: 620 MFGVPF 625
+ G+PF
Sbjct: 625 VVGIPF 630
>gi|325191332|emb|CCA26115.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 957
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 144/612 (23%), Positives = 271/612 (44%), Gaps = 90/612 (14%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGP------AAKILAIGLSSRKNLCVNSR 120
P K+ +C+RT ++ + + E + + LG +++ + L+S+ + C+NSR
Sbjct: 220 PPKIFFCSRTHSQLAQAVEEFRKCPSSYFHFLGDYPELEFRSRLRSCILASKSHFCINSR 279
Query: 121 VLAAENRD---SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
A +N+ SVD C+ L +EN C F+ ++ + + P V+ +
Sbjct: 280 --AKQNKHDNRSVDEKCQN--------LLSEN----KCSFYRLGRESNAQSPKIPHVWDI 325
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
++ + K++ C Y+ A + + FA++V Y YL+ P + + + K+++VV DEAH
Sbjct: 326 EEFISLSKRKKECAYYSALNTLPFADIVFCPYSYLIHPSIRSAVKISV-KDAIVVLDEAH 384
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAG-RLRAEYNRLVE------ 290
N++++C + S V + TL ++ +++ ++ R +A + ++ + R ++
Sbjct: 385 NVEDICRSSASFEVTKDTLSICIQSFTQVIEKANRPQAYPSLLKILTGFERWMDMVSTTV 444
Query: 291 GLALRGNLPIADAWLSNPALPSDILKEAVPGN------IRRAEHFLHVLRR-LVQYLRGR 343
L G ++ W + A+ + E N ++ A + +H R L+Q +G
Sbjct: 445 KLQTTGFEEESNVWSGSDAIA--MFDEYAGMNQDNFSSLQVASNLVHEHERILMQEEKG- 501
Query: 344 LETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDF 403
T N EK G + + I KT+ +++ D F ++ DF
Sbjct: 502 --TGNDEKSGSIQPNSPEVLLRPIALKTV-------ETILCVASFMFRDNFKYLD---DF 549
Query: 404 ATLV-GTYTRGFSIIIEPFDERMPHIPDPV----------LQLSCHDASLAVKPVFDRFQ 452
L + + +S I P D+ + L + C ++ + +
Sbjct: 550 KLLFFKSRAQKWSKDI-PSDDHLAMKDKKATTNTAGWQFRLAIWCLSGAVVFADIAKDAR 608
Query: 453 SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM-------VLTRGSDQLPVS 505
SV++TSGTL+P+D Y L F + L + + M + +G Q+ +S
Sbjct: 609 SVILTSGTLTPMDSYAGELGL------DFGVRLEANHVVDMRTQVFIRAIMQGPGQVDLS 662
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
T + ++ G LL + V ++P GI+ F SY + ++ W +G+ +I K
Sbjct: 663 TTYQNQNTFRYQDALGNLLKQYVELIPGGILMFLPSYRLLGILVNRWKQTGVWYQINTAK 722
Query: 566 LVFIETQ--------DVVETTLALDNYRKACDCG----RGAVFFSVARGKVAEGIDFDRH 613
VF E + D+ + LA+ + D RGA+F +V RGKV+EGIDF
Sbjct: 723 KVFTEARSAGINFDADLEQYKLAVQKEDSSSDAQSPKQRGAIFLAVYRGKVSEGIDFSDG 782
Query: 614 YGRLVIMFGVPF 625
R VI G+PF
Sbjct: 783 NARAVIAVGIPF 794
>gi|391868700|gb|EIT77910.1| helicase of the DEAD superfamily [Aspergillus oryzae 3.042]
Length = 734
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 157/663 (23%), Positives = 271/663 (40%), Gaps = 107/663 (16%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTG--TGKTIALLSLITSYVLSKPENP- 67
Y PYD Q +M L ++ + E PTG G + L L+ + +P
Sbjct: 12 YSPYDI----QLQFMRALYSCIEKGKVAVFESPTGKLAGLSTGTLELLKRFQHKSSAHPR 67
Query: 68 ---------VKLIYCTRTVHEMEKTLAELKLLHN------------YQTRHLGPAAKILA 106
+K++YC+RT ++ + +EL+ ++ T L + L+
Sbjct: 68 QDEDYGDEDIKILYCSRTHSQLTQFASELRRVNMPSSIPKDFSEGVADTDGLQEGVRHLS 127
Query: 107 IGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAAS 166
+G SRKNLC+N RV +N ++ C V AAE + C F + E A
Sbjct: 128 LG--SRKNLCINPRVSYLDNVTAISERCLDMQQPGV---AAE----QRCPFLPSNENEAQ 178
Query: 167 AAVLPPGVYT----LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS 222
V ++D+ GK G CPY+ +R + + + +V Y LL +
Sbjct: 179 VLQFRDHVLATVKDIEDIGKLGKDIGICPYYASRSVTKHSEIVTLPYPLLLQRSARDALD 238
Query: 223 KEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR 282
+ K VVV DEAHN+ + SV++ TL +L ++ +FK G+ R
Sbjct: 239 LSI-KGHVVVIDEAHNLMDAISNIHSVTI---TLSELQTSLFQLTTYARKFKTRLKGKNR 294
Query: 283 ---AEYNRLVEGLA--LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLV 337
A+ RLV + L+ L + A P PSD++ I +L
Sbjct: 295 NYIAQVIRLVTSITDHLKTILETSQAP-EGPVQPSDLMSGKGVDQINPY--------KLC 345
Query: 338 QYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL-EITDTDEFLH 396
+YLR E++ K S + A D+K + S +L L ++ + +
Sbjct: 346 RYLR---ESKLARKVDGYSEFSRERADRQADRKPSTPVLFHIQSFLLPLMNLSAEGKLFY 402
Query: 397 IQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVI 456
I+ D ++++P ++ + + D ++V++
Sbjct: 403 IKAQGDIQLKY--------MLLDPMNQ--------------------FREIVDDARAVIL 434
Query: 457 TSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP------MVLTRGSDQLPVSTKFDM 510
GT+SP+ Y + + P V S + + + P VL +G F+
Sbjct: 435 AGGTMSPMTDY--IHHLFPYVPSSRLGTFSYGHVIPPENLIAQVLGKGVTGTEFDFTFET 492
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN-------DSGILKEIMQ 563
R + + G+ + + ++PDG+V FF SY Y+ ++++ W + + I
Sbjct: 493 RDSERMIVDLGRTMAALCQVIPDGVVAFFPSYDYLSQVLSIWKRTLAGEKNRTVYDLIEG 552
Query: 564 HKLVFIETQDV-VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFG 622
K + E++DV + T L Y GRGA+ SV GK++EGI+F GR V++ G
Sbjct: 553 KKTILHESRDVTISTEELLQEYASIVGSGRGALLLSVVGGKLSEGINFSDRLGRGVLIVG 612
Query: 623 VPF 625
+PF
Sbjct: 613 LPF 615
>gi|297597115|ref|NP_001043456.2| Os01g0592900 [Oryza sativa Japonica Group]
gi|53791584|dbj|BAD52706.1| DEAH helicase isoform 5-like [Oryza sativa Japonica Group]
gi|255673416|dbj|BAF05370.2| Os01g0592900 [Oryza sativa Japonica Group]
Length = 876
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 137/546 (25%), Positives = 225/546 (41%), Gaps = 73/546 (13%)
Query: 109 LSSRKNLCVNSRVLAAENRDSVDAA---CRKRTASWVRALAAENPNIETCEFFENYEKAA 165
L SR+ +C++ V R +A C+KR W R + EF N +
Sbjct: 4 LGSREQMCIHEEVSKLRGRQQNNACHYLCKKR---WCRH------HNSVAEFMRNNSELG 54
Query: 166 SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM 225
S A ++DL G+ +G CPY+++R + + +++ Y YL+DP ++
Sbjct: 55 SEAC------DIEDLVNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIP 108
Query: 226 QKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEY 285
+V++FDEAHN++++C +A S + L ++ + I+ A A+
Sbjct: 109 WDNAVLIFDEAHNLESICADAASFDLLPNNLSSC---IAEAQECIQLCSAKRTFENSADK 165
Query: 286 NRLVEGLALRGNLPIA-DAWLSNPALPSDILKEAVPGNIRRAEHFLHVL-------RRLV 337
E A+ L +A + +S + S L PGN FL L ++L+
Sbjct: 166 QFDPENYAILKALLMALEKKISEVVIDSKELGHTKPGNY--IYEFLSELNITSETSKKLI 223
Query: 338 QYLRGR---LETENVEKEGPVSFVASITAHAGIDQKTLRFCYE---RLHSLMLTLEITDT 391
+ G LE N + GP + + L + + H+ + +
Sbjct: 224 DTIDGASLLLEEGNSAETGPGMKAKATVCRLETIRDILDIIFRGGGQSHAKYYRFHVNEC 283
Query: 392 DEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFD-R 450
Q D ++G +R L C + LA++
Sbjct: 284 Q-----QNSGDALKVLGKVSR-------------------TLSWWCFNPGLAMEEFLKLG 319
Query: 451 FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM 510
+S+++TSGTLSP+D LN V + D I V+ G P+++ +
Sbjct: 320 VRSIILTSGTLSPLDSLALELNLEFPVRLENPHVIASDQIWVGVVPVGPSGHPLNSSYRT 379
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG---------ILKEI 561
R + G +V IVPDG++ FF SYS MD+ I W D I + I
Sbjct: 380 RETLKYKQELGITIVNFARIVPDGLLVFFPSYSMMDKCINCWKDRNHENSSDEHTIWQRI 439
Query: 562 MQHKLVFIETQDVVETTLALDNYRKAC--DCGRGAVFFSVARGKVAEGIDFDRHYGRLVI 619
+HK IE + A+++Y GA+FF+V RGKV+EG+DF GR VI
Sbjct: 440 CKHKQPVIEPRQSSNFPNAIEDYAAKLRDSSTTGAIFFAVCRGKVSEGLDFADRAGRAVI 499
Query: 620 MFGVPF 625
+ G+PF
Sbjct: 500 VTGMPF 505
>gi|406865719|gb|EKD18760.1| putative ATP-dependent RNA helicase chl1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 894
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 143/598 (23%), Positives = 259/598 (43%), Gaps = 84/598 (14%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLH---NYQTRHLGPA--AKILAIGLSSRKNLCVNSRVL 122
K+ YC+RT ++ + + EL+ ++ + + ++ P+ + + L SRKNLC+N +V
Sbjct: 203 TKIFYCSRTHSQLTQFINELRRVNFPPSIKDENIKPSDIEDLKHLTLGSRKNLCINPKVN 262
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP----PGVYTLQ 178
+ +V+ C + + P C F N E + ++
Sbjct: 263 KLNSLTAVNERCAELQQT-------STPKEHKCVFLPNKENQTLVNTFRDRSLATIRDIE 315
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
D+ GKQ G CPY+ +R ++ A +V Y LL + + K VV+ DEAHN
Sbjct: 316 DMGDLGKQIGICPYYASRSAIRPAEIVTLPYPLLLQKSAREALGISL-KGHVVIIDEAHN 374
Query: 239 IDNVC--IEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---AEYNRLVEGLA 293
+ + I + VS+R+ R +++ +++F+ G+ R A+ R+++ L
Sbjct: 375 LMDAISGIHGVEVSLRQ-----LKRGRAQLGVYLQKFRNRLKGKNRVYIAQVVRVIDSLT 429
Query: 294 --LRGNLPI------------ADAWLSNPALPSDILKEAVPG-NIRRAEHFLHVLRRLVQ 338
L L + AD + + SD KE + G + + F +LV
Sbjct: 430 GYLESRLALHVSETPLYLSFRADLEEKSDGIVSD--KELLSGKGVDQINLF-----KLVH 482
Query: 339 YLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQ 398
YL+ VE + + T +Q ++ SL+L L + L
Sbjct: 483 YLQESKLARKVESYALYTETDTSTTAKTSEQSKSTPVLHQISSLLLALTHPSKEGRL--- 539
Query: 399 TICDFATLVGTYTRGFSIIIEPFDERMPHIPDPV-LQLSCHDASLAVKPVFDRFQSVVIT 457
F L P PD + L+ D + + + ++V++
Sbjct: 540 ----FYALSPN----------------PASPDLINLKFLLLDPAPHFQAIVSEARAVILA 579
Query: 458 SGTLSPI-DLYPRLLNFHP---VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSD 513
GT+SP+ D L + P + + S + ++ + L+RG F R +
Sbjct: 580 GGTMSPMSDYTSHLFPYLPPAGITTLSCGHVIPKENLLAWNLSRGPTGQEFDFTFKNRGN 639
Query: 514 PGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW------NDSGILKEIMQHKLV 567
+ + G+ L+ + ++VPDG+V FF SYSY+ I++ W + +L+ + K++
Sbjct: 640 NDMIDDLGRALLNICTVVPDGVVVFFPSYSYLSSIVSRWEVIPGQDQKSLLQRLEGKKVL 699
Query: 568 FIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
F E+++ T+ L+ Y KA D GRG + SV GK++EGI+F GR V++ G+PF
Sbjct: 700 FKESKEQSVDTV-LNEYAKAIDTGRGGLLLSVVGGKMSEGINFSDSLGRCVVIVGLPF 756
>gi|123437769|ref|XP_001309677.1| helicase [Trichomonas vaginalis G3]
gi|121891414|gb|EAX96747.1| helicase, putative [Trichomonas vaginalis G3]
Length = 859
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 147/602 (24%), Positives = 256/602 (42%), Gaps = 81/602 (13%)
Query: 39 LLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHL 98
LLE PTGTGKT++LL ++ + +++Y +RT ++ + ELK +TR
Sbjct: 15 LLESPTGTGKTLSLLCSTLAWK-EQTHYRCQIVYSSRTHSQLSNVIEELK-----KTRFK 68
Query: 99 GPAAKILAIGLSSRKNLCVNSRVLAAEN----RDSVDAACRKRTASWVRALAAENPN--I 152
A I +SRK LC+N + +N R + +K+ + N N +
Sbjct: 69 PRVAHI-----ASRKMLCINHTINKYDNFLITRLCHNLRSKKQCPYGIDENLMSNSNEVL 123
Query: 153 ETCEFFENY-EKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQY 211
C E Y E A+ + CPYF A+ + A++++ Y Y
Sbjct: 124 TACSDIEEYIENCANHMI--------------------CPYFAAQINSEQADLILTPYTY 163
Query: 212 LLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIE 271
++DP V + +V++FDEAHN + C EA S + ++ A L +I E
Sbjct: 164 IVDPNVRQFLPSTTLVGNVLIFDEAHNFADTCSEAYSAKIYFKSFNDAALTLMKI--EPN 221
Query: 272 RF-KATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFL 330
RF AT + + N L+ A+ N+ L N E+V + + +
Sbjct: 222 RFSNATRNSKAKVNGNDLLSTRAILMNIFQKCDTLENTDYEYKTACESVSSSAKSVLYVK 281
Query: 331 HVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLT---LE 387
+L + R AG+ ++ R Y L ++ L+
Sbjct: 282 KTAEQLYAFFRD----------------------AGLTKENSRLVYSVLDLVVQKGDELQ 319
Query: 388 ITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMP--HIPDPVLQLSCHDASLAVK 445
I + +EF +Q+I F L+ + +E FD + + + + C S+A+K
Sbjct: 320 ILN-NEFGSMQSIMSFIDLIFP---NATEAVEMFDSKFSILFTTNRTISIICFSPSIAMK 375
Query: 446 PVFDRF-QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRG-SDQLP 503
V D +++++TSGTLSP+ L + + ++ D + G S Q
Sbjct: 376 KVADFLPKTMILTSGTLSPLSSLEDELEYKFPIKLECNHIVSPDNFLVAIANSGISGQRF 435
Query: 504 VSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQ 563
T + R + + + ++ + P G + FF S+SYMDE+ I +
Sbjct: 436 NFTYQNRRGNNRLESELVDSVTDVFKVSPSGALLFFPSFSYMDEV-----SRSISSNASR 490
Query: 564 HKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
K ++IE +D V+ L+NY++ D +GA +V RG+ +EG+DF + R V + G+
Sbjct: 491 VKRIYIEAKDAVKQATVLENYKR--DAMKGAALLAVCRGRSSEGLDFVDDFARFVGVVGI 548
Query: 624 PF 625
P+
Sbjct: 549 PY 550
>gi|356522168|ref|XP_003529720.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Glycine max]
Length = 897
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 155/616 (25%), Positives = 254/616 (41%), Gaps = 104/616 (16%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
+K+ +C+RT ++ + + EL R A ++ + L SRKNLC+N V+A N
Sbjct: 188 LKVYFCSRTHSQLSQFIKEL--------RRTVFANEMNVVSLGSRKNLCINEEVVALGNS 239
Query: 128 DSVDAAC------RKRTASWVRALAAENPNIET-----CEFFENY--EKAASAAVLPPGV 174
++ C +K A+ V+ L T C + ++ V G
Sbjct: 240 TRINERCLELQKKKKNEATKVKNLKVGAGVCRTKASSGCPMLRKHRVQQEFRNEVSQQGP 299
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
++DL G+ G CPY+ +R +VQ A++VV YQ LL + + K ++++ D
Sbjct: 300 LDIEDLANLGRTMGACPYYGSRSLVQGADLVVLPYQSLLSKSSRETLGLNL-KSNIIIID 358
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKA--TDAGRLRAEYNRLVEGL 292
EAHN+ + I + LE R++ R ERF+ A R + ++
Sbjct: 359 EAHNLADSLINMYDSKITSSQLEIVHRHVERY---FERFRNLLGPANRRYIQTLMVLMRA 415
Query: 293 ALRGNLPIADAWLSNPALPS-----------------DILKEAVPGNIRRAEHFLHVLRR 335
LR L D L + + D L E NI L +
Sbjct: 416 FLRALLDDKDGNLKDSCRDTAQASEESGACDFTMAINDFLFELNIDNIN--------LVK 467
Query: 336 LVQYLRGRLETENVEKEG-PVSFVASITA-HAGIDQKTLRFC---YERLHSLMLTLEITD 390
L++Y++ V G V+ +A I A H +Q C ++ L ++L+L D
Sbjct: 468 LLKYIKESNIMHKVNGYGEKVATLAKIPAIHIIGEQAEEGSCISAFQALADILLSLTNND 527
Query: 391 TDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR 450
D ++ + +R S F ++ HI +L + D
Sbjct: 528 GD-----------GRIIISRSRSTS-----FKKQGGHIKYVMLS-----GEKIFSEIVDE 566
Query: 451 FQSVVITSGTLSPID---------LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQ 501
+VV+ GTL PI+ L P L+F S + D I P+ +TRG
Sbjct: 567 AHAVVLVGGTLQPIEETRERLFPWLPPNQLHFF-----SCGHIVPPDSIMPIAVTRGPTG 621
Query: 502 LPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEI 561
F RS P + R G LL +V++V +GIV FF S+ Y + + W SGIL+ I
Sbjct: 622 RSFDFSFSSRSSPDMMRELGLLLCNLVTVVHEGIVVFFPSFDYENRVYEHWKSSGILERI 681
Query: 562 MQHKLVFIETQDVVETTLALDNYRKACD------------CGRGAVFFSVARGKVAEGID 609
++ K VF E ++ ++ L Y+ D GA+ +V K++EGI+
Sbjct: 682 IKRKRVFREPRNNMDVESVLKEYKDTIDTISVMNSEVNQASHNGAILLAVVGAKLSEGIN 741
Query: 610 FDRHYGRLVIMFGVPF 625
GR ++M G+P+
Sbjct: 742 LSDGMGRCIVMVGLPY 757
>gi|307177078|gb|EFN66346.1| Fanconi anemia group J protein [Camponotus floridanus]
Length = 772
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 144/601 (23%), Positives = 264/601 (43%), Gaps = 92/601 (15%)
Query: 62 SKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCV---- 117
+K + K+ Y TRT ++++ + ELK +T + IL SSR+ C+
Sbjct: 120 AKAQKVPKIYYGTRTHKQIQQVVRELK-----KTVYRDKRMTIL----SSRQYTCIQKSN 170
Query: 118 -NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT 176
N L E D + + + L + + + F EK +
Sbjct: 171 KNKNELCKELLDPLKS---------TKCLYYNDQSKKRMALFNELEKP----------WD 211
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVF 233
++DL +FGK G CPYF AR ++ A ++ Y Y++DP I + MQ K +V+
Sbjct: 212 IEDLFSFGKDIGICPYFGARSLMDQAEIIFCPYNYIVDPH----IRESMQINLKGDIVIL 267
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI-----NQEIERFKATDAGRLRAEYNRL 288
DEAHNI++ C EA SV+ R L A + + N++ +R T + +
Sbjct: 268 DEAHNIEDTCREAASVNFRNDELRIAADDCTHWSRKYRNRDRDRDIYTIIETYLTDIAKF 327
Query: 289 VEGLALR---GNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLE 345
+E + ++ N + + WL L +L + + F + +Q+
Sbjct: 328 LEAIDVKQNSNNEMVNNCWLGAEFL---VLLDMNNIGSSKFSAFHDASKMAIQHYE---- 380
Query: 346 TENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFAT 405
E ++ P V +I+ Q T R L L +++ +D F++ +C
Sbjct: 381 -EMKQETRPDKIVQAIS------QDTKRI----LEDLCFAIQMLTSDTFVNDYRVC---- 425
Query: 406 LVGTYTRGFSIII---------EPFD-ERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVV 455
++ + I+I + F+ + P +++L C + ++ P+ +SV+
Sbjct: 426 VIESMEPSKKIVIPENTWISTKKNFEFSFFKNKPLRIMKLLCMNPAVVFAPLARIVRSVI 485
Query: 456 ITSGTLSPIDLYPRLL--NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSD 513
+ SGTL+PI + L F VV+ +S +D + + RG + + F+ +
Sbjct: 486 VASGTLTPITSFQSELGTKFPHVVNPDHIIS--KDQVYVRCIPRGPNGKTLMANFENVNS 543
Query: 514 PGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD 573
G L++++ VP G++CFF SY M+++ W ++G ++ + K +F+E ++
Sbjct: 544 WNFQDELGSLVLQVCDAVPYGVLCFFSSYITMNKLHDRWRNTGTWSKLEKLKKIFVEPRN 603
Query: 574 VVETTLALDNY--------RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
++ Y K+ GA+FF+V RGKVAEGIDF + R V+ G+P+
Sbjct: 604 NSNLPTMMEEYCNVIRESSSKSFHVASGAIFFAVYRGKVAEGIDFSDNDARCVLAVGIPY 663
Query: 626 Q 626
+
Sbjct: 664 R 664
>gi|317032533|ref|XP_001395061.2| ATP-dependent RNA helicase CHL1 [Aspergillus niger CBS 513.88]
Length = 834
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 138/588 (23%), Positives = 245/588 (41%), Gaps = 96/588 (16%)
Query: 66 NPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAE 125
+ VK+ YC+RT ++ + E +L ++ + L SRKNLC+N RV + E
Sbjct: 199 DEVKIFYCSRTHSQLTQFAGEEEL-----------EERVKHVTLGSRKNLCINPRVSSLE 247
Query: 126 NRDSVDAACRKRTASWVRALAAENPNIET---CEFFENYEKAASAAVLP----PGVYTLQ 178
N +++ C L + PN+ C F + E V ++
Sbjct: 248 NATAINERC----------LDLQQPNVNPQHRCPFLPSKEDERQVLQFRDHALSTVKDIE 297
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
DL GK+ G CPY+ +R +V+ + +V Y LL ++ + K V++ DEAHN
Sbjct: 298 DLGKLGKKIGICPYYASRSVVKDSEIVTLPYPLLLQRSAREALNSSV-KGHVIIIDEAHN 356
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+ + SV+V TL +LS++ +FK G+ R+ +++
Sbjct: 357 LMDAISNIHSVTV---TLSQLQTSLSQLTIYGRKFKTRLKGKNRSYVAQVI--------- 404
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
+L + +LR LE+ EGPV +
Sbjct: 405 --------------------------------RLLSSIAAHLRSLLESGKA-PEGPV-LI 430
Query: 359 ASITAHAGIDQ----KTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGF 414
+ + + G+DQ K R+ E + + + T + Q V + +GF
Sbjct: 431 SELMSGKGVDQINPYKLSRYLQESKLARKVDGYVEFTRDPSDKQASRSPTVPVLFHIQGF 490
Query: 415 --SIIIEPFDERM---PHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
S++ + R+ D L+ D + + + + +++++ GT+SP+ Y
Sbjct: 491 LLSLMNPSAEGRLFYSKEQGDIQLKYMLLDPTNQFRELVEDARAIILAGGTMSPMTDYMN 550
Query: 470 LLNFHPVVSR----SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLV 525
L + SR S+ + + + L RG +D R + + G+ +
Sbjct: 551 HLFSYVPASRLDTFSYGHVIPPENLIAHTLVRGVQGSEFDFTYDARDSEKMIMDLGRTIA 610
Query: 526 EMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE-------IMQHKLVFIETQDVVETT 578
+ ++PDG+V FF SY Y+ ++ W + ++ I Q K + E++D+ TT
Sbjct: 611 TLCHVIPDGVVAFFPSYDYLGRVLNIWKKPMLGEQGQTVYNLIGQKKPILSESRDMTVTT 670
Query: 579 LAL-DNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L Y D GRGA+ SV GK++EGI+F GR V++ G+PF
Sbjct: 671 EELLHTYANTVDSGRGALLLSVVGGKLSEGINFSDKLGRGVLIVGLPF 718
>gi|380021224|ref|XP_003694471.1| PREDICTED: Fanconi anemia group J protein homolog, partial [Apis
florea]
Length = 878
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 155/674 (22%), Positives = 275/674 (40%), Gaps = 122/674 (18%)
Query: 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY---------VLSKPENPV 68
Y Q + M +L + +CLLE PTG+GKT+ALL + ++ + EN
Sbjct: 166 YSCQIAVMNKLIQGCVKGENCLLESPTGSGKTLALLCGVLAWHDHYIGEGKQTTSCENNE 225
Query: 69 K-------------------------------------LIYCTRTVHEMEKTLAELKLLH 91
K + Y TRT ++E+ + EL
Sbjct: 226 KDCCQESSKKCMLDSDDSYEDYEDLLEDAKGKKLKVPRIFYGTRTHKQIEQVVKEL---- 281
Query: 92 NYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRK--RTASWVRALAAEN 149
R K + I LSSR+ C+ + +N+ + C + TA
Sbjct: 282 ----RKTCYKHKKMTI-LSSREYTCIQN---TTKNKTEL---CNELLDTAKHKGCPYYNE 330
Query: 150 PNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
N +T F E+ L P ++ ++DL GK++ CPYF AR ++ A+++ Y
Sbjct: 331 TNKKTIGTFWALERFG----LRP-IWDIEDLVDIGKEKESCPYFAARTLMDTADIIFCPY 385
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI-NQ 268
Y++DP + + +M K+ V++ DEAHNI+++ + SVS R L+ + Q
Sbjct: 386 NYIIDPNIRESLQLDM-KDQVIILDEAHNIEDISRDVSSVSFREDHLQATAHECETLAKQ 444
Query: 269 EIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEH 328
E F D + L+ +A ++ + +N S
Sbjct: 445 RAEDFTTYDTLK-----TFLLNVMAFLKDMSLDKVDYNNENRSSKYWTGV------ELSM 493
Query: 329 FLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEI 388
FL + + L E + K ++S T + +LM T+ +
Sbjct: 494 FLMACNKAISDLNKAKEDNRMYKSITKPIISSSTKMT-------------IENLMYTIRM 540
Query: 389 TDTDEFLHIQTICDFATLVGTY---TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVK 445
+ E+ + C + V + + I ++ ++R+ L+L C + +A
Sbjct: 541 ITSKEYQNDYRACVIESTVKDFKHMSENAWISVKKCEQRVR-----TLKLVCMNPGVAFS 595
Query: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP------MVLTRGS 499
P+ + +++ SGTL+P +F + SF L + P + +G
Sbjct: 596 PLALNARCIILASGTLTPT------ASFQSELGTSFTHVLNTGHVIPKEQVYATCIPKGP 649
Query: 500 DQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILK 559
+ + + + + + G++L+++ +P GI+CFF SY+ M+ + W + I
Sbjct: 650 NGILLKANYQIVNTWQFQDELGQVLLDVCESIPHGILCFFSSYNVMNTQMERWKQNSIWS 709
Query: 560 EIMQHKLVFIETQDVVETTLALDNYRKACDC------GR--GAVFFSVARGKVAEGIDFD 611
+I K VFIE + T ++ YR+ + GR GA+F +V RGKVAEGIDF
Sbjct: 710 KITSVKTVFIEPRHGGGLTDIMNEYREVIEYTSTESKGRITGALFLAVFRGKVAEGIDFR 769
Query: 612 RHYGRLVIMFGVPF 625
+ R V+ G+P+
Sbjct: 770 DNEARCVVTVGIPY 783
>gi|449491848|ref|XP_004159020.1| PREDICTED: probable ATP-dependent RNA helicase DDX11-like [Cucumis
sativus]
Length = 1168
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 156/609 (25%), Positives = 243/609 (39%), Gaps = 93/609 (15%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
+K+ +C+RT ++ + + EL R A+++ I L SRK C+N VL +
Sbjct: 197 LKVYFCSRTHSQLSQFIREL--------RKTVFASELNVICLGSRKIFCINEEVLKLGSA 248
Query: 128 DSVDAAC----RKRTA--SWVRALAAENPNIET-----CEFFEN--YEKAASAAVLPPGV 174
++ C +K+T S + LA T C N +K + +
Sbjct: 249 SHINEQCLELQKKKTTETSKAKKLAGAGKMSRTKASSGCPMLRNPKLQKNFRSQISQREA 308
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
++DL G++ G CPY+ +R +VQ A+++V YQ LL + + K S+V+ D
Sbjct: 309 LDIEDLIHLGRKVGTCPYYGSRSLVQGADLIVLPYQSLLSKSSRESLGLVL-KNSIVIID 367
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERF-KATDAGRLRAEYNRLVEGLA 293
EAHN+ + I V LE ++ R ERF G R ++ A
Sbjct: 368 EAHNLADSLISMHDSKVSYSQLENVHHHMERY---FERFCSLLGPGNRRYIQTLIIVTRA 424
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLR-------RLVQYLRGRLET 346
L L I +A P K FL L +L+QY++
Sbjct: 425 LLKLLHIEEASYVEPCQNDSTGKNGALDYSMAINDFLFSLNIDNINFVKLLQYIKESNIM 484
Query: 347 ENVEKEGPVSFVASITAHAGIDQKTLRFCYER---------LHSLMLTLEITDTDEFLHI 397
V G +I + K CYE+ L ++L+L D D
Sbjct: 485 HKVSGYGE----RTIKPRNDLGIKPSGECYEKESTLSSFRALADMLLSLINFDGDG---- 536
Query: 398 QTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVIT 457
+ I G RG I R I V+ D + AV V+
Sbjct: 537 KMIISKNRPTGLGERGGCIKFVKL--RGDKIFSEVV-----DQAHAV----------VLA 579
Query: 458 SGTLSPID---------LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKF 508
GTL PI+ L P LNF S + + I PM ++ G +
Sbjct: 580 GGTLQPIEETRERLFPWLPPSQLNFF-----SCSHIVPPESILPMAVSSGPSGQLFDFSY 634
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
+ RS + + G LL +V++VP+GIV FF S+ Y +++ W SGIL IM+ K +F
Sbjct: 635 NRRSSSAIVKELGLLLCNIVTVVPEGIVVFFSSFDYEEQVYGLWKTSGILDRIMKKKRIF 694
Query: 569 IETQDVVETTLALDNYRKACDC------------GRGAVFFSVARGKVAEGIDFDRHYGR 616
E + + L Y++ D GAV F+V GK++EGI+ GR
Sbjct: 695 REPRKNTDVESVLKEYKENIDALSKKDPKQNILSTSGAVLFAVVGGKISEGINLSDGMGR 754
Query: 617 LVIMFGVPF 625
++M G+P+
Sbjct: 755 CIVMVGLPY 763
>gi|225685122|gb|EEH23406.1| CHL1 helicase [Paracoccidioides brasiliensis Pb03]
Length = 844
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 145/609 (23%), Positives = 259/609 (42%), Gaps = 103/609 (16%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLH-------------------NYQTRHLGPAAKIL 105
EN V++ YC+RT ++ + EL+ ++ + LG K L
Sbjct: 159 ENEVQVFYCSRTHSQLTQFAHELRRVNLPPSIPPEVDDDKAAADAVSSGVDSLGETLKHL 218
Query: 106 AIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAA 165
++G SR LC+N +V A N +++ C + E P C F N E
Sbjct: 219 SLG--SRNTLCINPKVRALGNPTAINERC-------LEIQRPETPAEHKCSFVPNKENEV 269
Query: 166 SAAVLP----PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
V ++D+ G + G CPY+ AR +V+++ ++ Y LL +
Sbjct: 270 LVNDFRDHTLAKVLDIEDIGKIGSKIGVCPYYAARSIVKYSEIITLPYPLLLQRSAREAL 329
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRL 281
+ + K VV+ DEAHN+ + SVSV L+ A L ++ ++K G
Sbjct: 330 NISL-KHHVVIIDEAHNLMDAISNIHSVSVSLSQLKLA---LYQLTTYARKYKTRLNGSN 385
Query: 282 R---AEYNRLVEGLA------LRGNLPIADAWLSNPALPSDIL--KEAVPGNIRRAEHFL 330
R + RLV L+ L N P A+ L PSDI+ K N + +L
Sbjct: 386 RVYVTQVIRLVNSLSEYLTRVLERNRP-AEGVLR----PSDIMTGKGVDQINPHKLSRYL 440
Query: 331 HVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITD 390
H +L + + G +E + E +G A + Q++ ++ S +L+L
Sbjct: 441 HK-SKLARKVDGFIEHSSTESQG--------LAESKNAQRSSTPVLFQVQSFLLSLMNPS 491
Query: 391 TDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR 450
++ L + + D +++ D + + + +
Sbjct: 492 SEGKLFFENTQN---------------------------DVLMKYILLDPTNHFREIVED 524
Query: 451 FQSVVITSGTLSPID-----LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
++V++ GT+SP++ L+P L+ + + S+ + D + M +T+G+
Sbjct: 525 ARAVILAGGTMSPMEDYADHLFP-YLSPERLRTYSYGHVIPSDNLKAMPVTKGAFNTEFD 583
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW------NDSGILK 559
+ R+D + G+ + + ++PDG+V FF SY Y+++++ W + +L
Sbjct: 584 FTYAKRNDESLIMGLGRTIAALCRVIPDGVVVFFPSYDYLNQVLTIWKKLLPNSQLSVLD 643
Query: 560 EIMQHKLVFIETQD-VVETTLALDNYRKACDCGR--GAVFFSVARGKVAEGIDFDRHYGR 616
I + K++F E+QD T L Y A + G GA+ SV GK++EGI+F GR
Sbjct: 644 SIQKSKVLFHESQDKATNTDELLQGYSNAINAGSGGGALLLSVMGGKLSEGINFSDRLGR 703
Query: 617 LVIMFGVPF 625
VI+ G+PF
Sbjct: 704 GVIVVGLPF 712
>gi|222630644|gb|EEE62776.1| hypothetical protein OsJ_17579 [Oryza sativa Japonica Group]
Length = 774
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 147/597 (24%), Positives = 254/597 (42%), Gaps = 90/597 (15%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + +RT ++ + + ELK +T ++ + L SRKNLC+N VL + +
Sbjct: 90 KVFFTSRTHSQLSQFVGELK-----KTEF---GWRLRTVCLGSRKNLCINKDVLKLGSAN 141
Query: 129 SVDAACRK-RTASWVRALAAENPNIETCEFF----------ENYEKAASAAVLPPGVYTL 177
++ C + + + E N + C+ +K + V G +
Sbjct: 142 RINERCLELQKSKKSSKTKVEGDNRKVCQSKTSCGCPMIRKRGLQKEFKSEVSEQGALDI 201
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+DL GK+ G CPY+ AR MV+ A++VV YQ LL + + K SVV+ DEAH
Sbjct: 202 EDLAQLGKKIGTCPYYGARDMVRTADLVVLPYQSLLLKSARESLGLNL-KNSVVIIDEAH 260
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGN 297
N+ + + + L LS + + RF++ L A R ++ L +
Sbjct: 261 NLADSLTSMYNSKITSSQLNAI---LSHLEAYLNRFQSV----LGAGNRRYIQTLTV--- 310
Query: 298 LPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLR-------RLVQYLRGRLETENVE 350
+ ++L D +A FL L +L QY++ E+ +
Sbjct: 311 --LTRSFLRVLTSNQD---DACTMTSMTINQFLFSLDIDNINIVKLCQYVK---ESNIIH 362
Query: 351 KEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDF-ATLVGT 409
K V+ I+Q + ++ L + + QT+ DF +L+
Sbjct: 363 K------VSGYANKLNINQ-------DGVNHLSHQQQYDEGSSIASFQTLADFLRSLLNC 409
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVF-----DRFQSVVITSGTLSPI 464
G I+ P D L+ L + +F D + +V++ GTL PI
Sbjct: 410 NDNGRIIVARKKFSGQPE--DAYLKF----VMLCAEKIFLEITCDAY-AVILAGGTLQPI 462
Query: 465 D-----LYPRLLNFHPVVSRSFKMS--LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVA 517
+ L+P N P + F + + + I P+ +TRG + RS +
Sbjct: 463 EETRLRLFP---NLPPSDIKFFTCNHIVPPESILPIAVTRGPSGKAFDFSYSSRSSHTMI 519
Query: 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVET 577
G+ L +V+ VP+G+V FF SY Y + W SG++ +I + K VF E ++ V+
Sbjct: 520 EELGRFLCNVVTTVPEGVVMFFASYEYERFVYDAWAASGMISKISKKKHVFREPKNSVDV 579
Query: 578 TLALDNYRKAC-DCGR--------GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ L+ Y++A C + GA+ +V GK++EGI+F GR V+M G+P+
Sbjct: 580 EMTLNKYKEAIQSCSKSSQDTGVTGALLLAVVGGKISEGINFSDGMGRCVVMVGLPY 636
>gi|395836775|ref|XP_003791325.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Otolemur garnettii]
Length = 880
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 149/591 (25%), Positives = 242/591 (40%), Gaps = 76/591 (12%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G +++++G SR+NLCVN V +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVQKSPFGKDVRLVSLG--SRQNLCVNQDVKRLGSV 278
Query: 128 DSVDAACR--KRTASWVRALAAE-------NPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C +R+ R A E C F+ + V ++
Sbjct: 279 QLINDRCMDMQRSKHEKRNEAEEEKPKRRRQEKQAACPFYSYEHMHLLRDEVLAEVKDIE 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL ++Q + VV+ DEAHN
Sbjct: 339 QLVALGKEAWACPYYGSRFAIPAAQLVVLPYQMLLHAATREAAGIQLQGQ-VVIIDEAHN 397
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+ + SV V L A S++ Q +ER+ L G L
Sbjct: 398 LIDAITGIHSVEVSGSQLCQAH---SQLLQYMERYGC--------------RALGSAGRL 440
Query: 299 PIADA-WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
I W+ + +D L ++ NI + V R + + R E+ G V
Sbjct: 441 CIPSVVWMELKTI-NDFLFQSQIDNI----NLFKVRRYCEKSMVSRKLFGFTERYGAVLS 495
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDE---------FLHIQTICDFATLVG 408
G + +RL + T DE +HI+ F T +
Sbjct: 496 SQEKPRLTGFQE-----FLQRLQPGVTEAPATPVDEGQARPPTSPLMHIE---GFLTALT 547
Query: 409 TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI-DLY 467
T + II+ + L+ + ++ V +++VI GTL P+ D
Sbjct: 548 TANQDGRIILN----HQGSLSQSSLKFLLLNPAVHFAQVVKECRAMVIAGGTLQPVSDFR 603
Query: 468 PRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGK 522
+LL VV S + D I P+VL+ G P+ K+ R P + G+
Sbjct: 604 EQLLACAGVEAERVVEFSCGHVIPPDNILPIVLSTGISNRPLDFKYQHRELPQMMDEAGR 663
Query: 523 LLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALD 582
+L + +++P G+VCFF SY Y ++ A W SG+L + K +F E + + L
Sbjct: 664 ILFCLCNVIPGGVVCFFPSYEYQRQVHAYWEKSGVLCRLASRKKIFQEPKSTNQVEQVLT 723
Query: 583 NYRKACD-CGR-------GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y K + CG+ GA+ SV GK++EGI+F + GR V+M G+P+
Sbjct: 724 EYSKCIENCGQVRGKMVTGALLLSVVGGKMSEGINFSDNLGRCVVMVGMPY 774
>gi|17506821|ref|NP_492769.1| Protein RTEL-1 [Caenorhabditis elegans]
gi|75018688|sp|Q93575.3|RTEL1_CAEEL RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|3876338|emb|CAB02102.1| Protein RTEL-1 [Caenorhabditis elegans]
Length = 994
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 161/683 (23%), Positives = 286/683 (41%), Gaps = 129/683 (18%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE-N 66
++V FP++ Y Q +M + LD K LE PTGTGKT++LL ++V + E
Sbjct: 17 LSVKFPFEP-YECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAWVQRQKETK 75
Query: 67 PVK--------------------------LIYCTRTVHEMEKTLAELKLLHNYQTRHLGP 100
P+ + Y +RT ++E+ + EL +T +
Sbjct: 76 PLDFATWQTSGAGGAEKTDEKLKSAYVPTIFYASRTHSQLEQVVHELN-----RTEYKWV 130
Query: 101 AAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFEN 160
IL SR++ C+N +V + + R A R L ++ C ++
Sbjct: 131 KTTILG----SREHFCINQKVKKIKESN--------RQAHVCRGLVSKR----ACHYYNK 174
Query: 161 YEKAASAAV---LPPG-VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPK 216
++ + + L G ++D G Q CPYF++R + A +++ Y Y++DPK
Sbjct: 175 FDACTTDKMTEFLDKGEAMDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPYNYIIDPK 234
Query: 217 VAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI------NQEI 270
+ ++ K S+V+FDEAHN++++C S + ++ L ++ +E
Sbjct: 235 MRRRYKLDL-KNSIVIFDEAHNLESICESNASAELTSTSIALCIEELKKVLALLVDEEET 293
Query: 271 ERFKATDA-----GRLRAEY-NRLVEGLALRGNLPIADAWLS-----NPALPSDILKEAV 319
R +A DA G + + +L+E L + + + S + S LK
Sbjct: 294 ARSEA-DAETGAFGSAKIDLTKKLIENLRTEDLMTVLEKIFSLEEEMDKLFGSSQLKSVP 352
Query: 320 P--GNIRRAEHFLHVL----------RRLVQYLRGRLETENVEKEGPVSFVASITAHAGI 367
P G E L L RLV LR +S++ S +
Sbjct: 353 PLSGKASDGEILLETLAKAGFDANSVERLVDVLRD-----------AISYLLSKNEEVAL 401
Query: 368 DQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP------- 420
+K E++ +L++ T H Q D A VG T ++P
Sbjct: 402 TEKGDGM--EKVADFLLSIYST------HAQ---DVAAAVGEETVKLVDRVDPKTVARNC 450
Query: 421 --FDERMPHIPDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPID--LYPRLLNFHP 475
+ ++ ++ C AS++++ + R ++V++ SGTLSPI Y LNF
Sbjct: 451 KLYIQKDKDNEKLTIKYFCFQASISMRMLKMRGVRNVLLASGTLSPIQAFTYNMGLNFGA 510
Query: 476 VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGI 535
++ +L + + ++TRG + ++ F R + + L+ ++ ++P GI
Sbjct: 511 ILENEH--ALKQVPVLTSIVTRGK-RGGLAGSFQNRKNLDYVTGVAEALLRVMEVIPQGI 567
Query: 536 VCFFVSYSYMDEIIATW--------NDSGILKEIMQHKLVFIETQDVVETTLALDNYRKA 587
+ FF SYS MDE++ATW ++ +++ + K V +E + E Y +
Sbjct: 568 LIFFSSYSQMDELVATWKTTKWSSNSNESFWEKMEKTKRVVVEPRAKEELAAIRLRYTQG 627
Query: 588 CDCGRGAVFFSVARGKVAEGIDF 610
GA +V RGKV+EGIDF
Sbjct: 628 VSEQHGAALLAVCRGKVSEGIDF 650
>gi|167526369|ref|XP_001747518.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773964|gb|EDQ87598.1| predicted protein [Monosiga brevicollis MX1]
Length = 1029
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 158/670 (23%), Positives = 269/670 (40%), Gaps = 149/670 (22%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL 61
+ KL+ + V FP++ + S CL T S + +
Sbjct: 3 VLKLQGIEVSFPFEPTWSRVSS--------------CLFCEARHT-------SPMPDITV 41
Query: 62 SKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV 121
+KP+ + ++TV E++ T +Y+ R + L SR LCV+ V
Sbjct: 42 NKPDELRAELLLSQTVKELKNT--------DYRAR---------SAVLGSRDQLCVHPEV 84
Query: 122 LAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKA-----ASAAVLPPGVYT 176
+ + C+ R N C F++N + A A P
Sbjct: 85 KTISSNAAKTRVCKIRV------------NAHDCSFYQNVDPVFRDVDADLATNPHPALD 132
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
L+DL G+++ CPYFL+R M A+V++ Y YL+D + ++ +VV+FDEA
Sbjct: 133 LEDLVQLGERRHACPYFLSRSMQSGADVILLPYNYLIDKQTRASQGIDLNG-AVVIFDEA 191
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRG 296
HNI++ C EA S + L G L+ I+Q + + DA R +RL+
Sbjct: 192 HNIESSCEEAASFDLTSADLAGF---LTEIDQLL---RVADADRPELSEDRLL------- 238
Query: 297 NLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVS 356
+LK+AV ++ R+E +N +
Sbjct: 239 -----------------LLKKAVLD---------------LEAALDRIELKNGGFKAKGD 266
Query: 357 FVASITAHAGIDQKTLRFCYERLHSLMLTL-------------------------EITDT 391
++ A AGI T E L ++TL + T
Sbjct: 267 YMYQFFAEAGISSTTHHDLSELLEQCVMTLLQQQANATGRCYLSKFQDVLKVAFSDAAKT 326
Query: 392 DE-------FLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
D ++H++ + ++ T +S ++ D+R L L C + A+
Sbjct: 327 DPRVLEKFYYVHVEEKANRSS--QKKTSDWSNSMQKLDKRTVR----TLSLWCFSPAFAM 380
Query: 445 KPVF-DRFQSVVITSGTLSPIDLY-PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQL 502
K + + +++++TSGTL+P++ + L+ PV+ + + +T + VL G
Sbjct: 381 KSLMAEGIKTLILTSGTLAPLNSFKAELMTDFPVMLENPHI-ITGKQVWAGVLPVGPSNA 439
Query: 503 PVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG-----I 557
+ + ++ R+ P G LV IVP G++ FF SY M + W I
Sbjct: 440 RLISNYENRNLPAYKNELGNSLVNFSRIVPAGLLVFFPSYGVMASCVEAWQQPSSTGACI 499
Query: 558 LKEIMQHKLVFIETQDVVETTLALDN-YRKACDCG-RGAVFFSVARGKVAEGIDFDRHYG 615
+ Q+K V +E ++ E A+ Y K D GA+F +V RGKV+EG+DF G
Sbjct: 500 WDRLSQYKTVIVEPREKHEFVAAMHAFYDKIQDPALSGAIFLAVCRGKVSEGLDFANSNG 559
Query: 616 RLVIMFGVPF 625
R VI+ G+P+
Sbjct: 560 RAVIITGLPY 569
>gi|224059074|ref|XP_002299703.1| predicted protein [Populus trichocarpa]
gi|222846961|gb|EEE84508.1| predicted protein [Populus trichocarpa]
Length = 918
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 152/616 (24%), Positives = 246/616 (39%), Gaps = 107/616 (17%)
Query: 69 KLIYCTRTVHEMEKTLAELK--LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
K+ +C+RT ++ + + EL+ L N +I + L SRKN C+N VL +
Sbjct: 210 KIYFCSRTHSQLSQFIKELRKTLFSN----------EINVVCLGSRKNFCINEEVLKLGS 259
Query: 127 RDSVDAAC------RKRTASWVRALAAENPNIET-----CEFFENY--EKAASAAVLPPG 173
V+ C +K S ++ +AE T C + +K G
Sbjct: 260 SVRVNERCLELQKNKKNEVSKIKNFSAEGRIRRTKASSGCPMLRKHKLQKEFRNETSQHG 319
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++DL G+ G CPY+ +R MV A++VV YQ LL + + K S++V
Sbjct: 320 ALDIEDLVRIGRSIGTCPYYGSRSMVPAADLVVLPYQSLLSKSSRESLGLNL-KNSIIVI 378
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHN+ + I + + L ++ IE++ L R ++ L
Sbjct: 379 DEAHNLADSLISMYDAKI-------TSSQLESVHSHIEKYFTRFRNLLGPGNRRYIQTLM 431
Query: 294 L--RGNLPIADAW--LSN------PALPSDILKEAVPGNIRRAEHFLHVLR-------RL 336
+ R L D LSN + +D K+AV FL L +L
Sbjct: 432 VLTRAFLQTLDNKKDLSNVNNYQAEEIAAD--KKAVCDTSIAINDFLFSLNIDNINLVKL 489
Query: 337 VQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEF-L 395
+QY++ + V ++ + E++ SL L + EF
Sbjct: 490 LQYIK------------ESNLVHKVSGYG-----------EKVASLQEGLALNRNGEFGE 526
Query: 396 HIQTICDFATLVG-----TYTRGFS-IIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFD 449
T+ F LV T G +II + L+ + D
Sbjct: 527 EGSTLSSFRALVDMLMSLTNNDGDGRMIISKMRSTCSGLQGGFLKYVMLTGEKIFSEIVD 586
Query: 450 RFQSVVITSGTLSPID---------LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
+V++ GTL PI+ L P L+F S + + I P+ ++RG
Sbjct: 587 EAHAVILAGGTLQPIEETRERLFPWLPPNQLHFF-----SCSHIVPPESILPIAVSRGPS 641
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ RS + G LL +V+ VP+GIV FF S+ Y ++ +W SGIL+
Sbjct: 642 GQSFDFSYSSRSSLVMIEELGLLLCNLVAFVPEGIVVFFSSFEYEGQVYDSWKKSGILER 701
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACDC-----------GRGAVFFSVARGKVAEGID 609
IM+ K +F E + + L L Y++ D GAV +V GK++EGI+
Sbjct: 702 IMRKKRIFREPRSNSDVELILKEYKETIDGLSSGTKEDGVRHNGAVLLAVVGGKISEGIN 761
Query: 610 FDRHYGRLVIMFGVPF 625
F GR ++M G+P+
Sbjct: 762 FSDGMGRCIVMVGLPY 777
>gi|353235657|emb|CCA67667.1| related to CHL1-protein of the DEAH box family [Piriformospora
indica DSM 11827]
Length = 769
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 142/588 (24%), Positives = 252/588 (42%), Gaps = 84/588 (14%)
Query: 68 VKLIYCTRTVHEMEKTLAEL-KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
K+ Y +RT ++ + E KL H + P A+++ +G SRKNLC+N L A+
Sbjct: 194 TKIFYTSRTHSQLSQLQVEFEKLKHLPSQANDRPIARVVPLG--SRKNLCINEE-LRAKG 250
Query: 127 RDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT----LQDLRA 182
D +D CR+ + + C + ++ A L + ++DL
Sbjct: 251 GD-LDEGCRE---------LIQEKGKKRCPYLPPAGDISAMADLRDQILATPRDIEDLAQ 300
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
GK+ CPY+ +R ++ A +V Y LL + + ++ ++V++ DEAHN+ +
Sbjct: 301 LGKELKTCPYYGSRKAIKQAELVTLPYNLLLQKQARETLGVDLTDQTVII-DEAHNLIDT 359
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGN----- 297
+ +VS+ L+ ++L ++ ++RF+ + RLVE L
Sbjct: 360 ILSIHTVSLPHSVLK---KSLEQLRIYLQRFRKMLTPQHALHLRRLVEFLVAVDKYCNDL 416
Query: 298 -LPIADAWLSNPALPSD---ILKEAVPG-NIRRAEHFLHVLR--RLVQYLRGRLETENVE 350
A N P + +L E V G N+ E +L + R V +L + +
Sbjct: 417 ATQFTGAETENMMTPGEMIAVLGEKVQGINLLEIEKYLRTSKIARKVSGYSDKLAAKEAQ 476
Query: 351 KEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY 410
G T H G + S ++TL + D LV T
Sbjct: 477 AAGK-------TFHQGTTPP-----LHLVQSWIVTLSNANED-----------GKLVITV 513
Query: 411 TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI-DLYPR 469
+R + PD L+ + S + + D +SVV+ GT++P+ D + +
Sbjct: 514 SRSKA-----------SSPDVTLKYQLLNPSRVFRDIVDSARSVVLAGGTMAPMSDFHSQ 562
Query: 470 LLNFHPVVSR------SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKL 523
L+ P +S S + + + +V++RG + K + DP V G++
Sbjct: 563 LV---PYLSEDRISLFSCGHVMPEENLKTVVVSRGPTGKGLVYKHQQQKDPAVMDELGQI 619
Query: 524 LVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDN 583
L +V+IVPDG+V FF SY++++ + A W +G L+ + K +F E Q+ L
Sbjct: 620 LANLVNIVPDGMVVFFPSYNFLNALRARWGGNGTLERLKNKKKLFFEPQEGGSVDAVLQE 679
Query: 584 Y------RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y +K D GA+ +V K++EG++F R V++ G+PF
Sbjct: 680 YTDAIRLKKPEDKQTGALLLAVVGAKLSEGLNFSDELSRAVVVVGLPF 727
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVK 69
FPYD Y Q M L A++ K ++E PTGTGKT++LLS +++ + VK
Sbjct: 15 FPYDKPYNIQLDLMRHLFAAIEGKQVAVVESPTGTGKTLSLLSGSLTWLQDEKSRAVK 72
>gi|321471679|gb|EFX82651.1| hypothetical protein DAPPUDRAFT_48831 [Daphnia pulex]
Length = 720
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 143/591 (24%), Positives = 257/591 (43%), Gaps = 87/591 (14%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + + E + +TR L+SR++ C++ V + N++
Sbjct: 2 KIFFGTRTHKQITQVVKEFRRTMYCKTR---------MTVLASREHACIHPDVSRSFNKN 52
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVY------TLQDLRA 182
+ N +T E N + +L VY ++DL
Sbjct: 53 E----------------GCQQLNDQTSE--SNLYRTRGIEMLSKHVYGYDNGWDIEDLVG 94
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEAHNI 239
G++ CPY+ +R +++ A +V Y YL+DP V K M S+++ DEAHNI
Sbjct: 95 LGRKLQRCPYYASRDLMEQAEIVFVPYNYLIDPAV----RKRMHIPINGSIIILDEAHNI 150
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRI-NQEIERFKATDAGRLR-----AEYN----RLV 289
++ A S + ++ A + ++ N ++ K+ D RL+ A+++ L+
Sbjct: 151 EDSARAAASGAFSQEDFRLALNDCEKVTNVRVKDQKSKD--RLKQISKLAQFSSYMMNLM 208
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
+G+A + + L +L E P NI F+ + +L +
Sbjct: 209 DGMAPKSSFDDEAIMTGKEFLDKLVLDEYGP-NILSELSFVIEEGEEEPEIDSKLVDPRL 267
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEF-LHIQTICDFATLVG 408
+A T A ++ + + +LML E T D++ + + +F +
Sbjct: 268 H------LLA--TTRATLED------FLTIVNLMLGDEQTHLDDYQVAVARTSNFVIISN 313
Query: 409 TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYP 468
T+ F R H VL+L C + ++ +K + +S+++TSGTLSP+D Y
Sbjct: 314 YLTQVFLNKFSSSPSRWTH----VLKLWCLNPAIVLKQIRQTTRSIIVTSGTLSPLDSYA 369
Query: 469 RLLNFHPVVSRSFKMSLTRDCICPM--VLTRGSDQLPVSTKFDMRSDPGVARNY----GK 522
L F ++L + P V Q P STK + Y G+
Sbjct: 370 SELGI------DFMITLEASHVIPANRVWIASISQGPRSTKLNGSYKTTSTFEYQDELGR 423
Query: 523 LLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD--VVETTLA 580
L++ + +P G++CF SYS +++++A W D+G+ + + K + E+++ E TL
Sbjct: 424 LMLSVCQTIPHGVLCFLPSYSLLEKLVARWQDTGLWQHLSAIKTLVCESRNSSAFEETLK 483
Query: 581 LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631
D Y D GA+ +V RGKV+EG+DF + R V+ G+PF Y K
Sbjct: 484 -DFYSAIEDSQSGALMLAVCRGKVSEGLDFTDNNARAVVCVGIPFPYLKDK 533
>gi|194382496|dbj|BAG64418.1| unnamed protein product [Homo sapiens]
Length = 127
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 87/124 (70%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAA 124
+A
Sbjct: 121 TTSA 124
>gi|378731863|gb|EHY58322.1| chromosome transmission fidelity protein 1 [Exophiala dermatitidis
NIH/UT8656]
Length = 839
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 143/590 (24%), Positives = 253/590 (42%), Gaps = 87/590 (14%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQT-----RHLGPAA----KILAIGLSSRKNL 115
EN +K+IYC+RT ++ + + EL+ + + +L P+ ++ + L SRKNL
Sbjct: 190 ENRLKIIYCSRTHSQLTQFVNELRRVKPPSSIPSAFDNLRPSTDLEERVKHLPLGSRKNL 249
Query: 116 CVNSRVLAAENRDSVDAACR--KRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG 173
C+N +V + +++ C ++ + P+ E + E++ A A +
Sbjct: 250 CINPKVARLSSTTAINEQCLELQKPGTAKDKKCPYLPSKEDRQRMESFRDKAIAQI---- 305
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++DL GK+ CPY+ +R + A V+ Y LL + + K+ V++
Sbjct: 306 -RDIEDLAHLGKRMDLCPYYASRSAITSAEVLTLPYPLLLQKSAREALGISV-KDDVIII 363
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHN+ + E S ++R L+ A + ++ RFK RL+ + NR+
Sbjct: 364 DEAHNLADAIAETFSAALRLSQLDQA---VHQVTAYAVRFK----NRLKGK-NRVYVTQV 415
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
LR +L LR E +++
Sbjct: 416 LR------------------------------------LLNSFTDCLRSVGEKSHMKD-- 437
Query: 354 PVSFVAS-ITAHAGIDQ----KTLRFCYERLHSLMLTLE-ITDTDEFLHIQTICDFATLV 407
V+ AS + + G+DQ K +R+ +E L +E T+ + + Q A +
Sbjct: 438 -VTVTASQLMSGKGVDQIRPHKLMRYLHE--SKLCHKVESYTEVQKSVEGQNQGKGALM- 493
Query: 408 GTYTRGFSIIIEPFDER----MPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSP 463
+ S+++ P DE + D + + D + V + ++V++ GT+SP
Sbjct: 494 -QFQNFLSLLMNPDDEGRFFVVRQDGDITVHYTLLDPREHFRDVVEDARAVILAGGTMSP 552
Query: 464 IDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM----RSDPGVARN 519
+ Y L + R S + + Q P ++FD R +
Sbjct: 553 MADYANYLFSYLDKDRLETFSFGHVVPSSHLFAQPVVQGPSGSEFDFTFEKRRSEQMILE 612
Query: 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG----ILKEIMQHKLVFIETQDVV 575
G L+ IVPDG+V FF SY Y+ +++A W +L+ + + K+ F E++ V
Sbjct: 613 LGHLVSRTCKIVPDGVVVFFPSYDYLAQVVAVWQKQPPALPLLQSLGKTKVTFQESKGVS 672
Query: 576 ETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L L +Y A D G+GA+ SV GK++EGI+F GR+VI G+PF
Sbjct: 673 VDEL-LRDYANAVDSGKGALLLSVVGGKLSEGINFSDKLGRVVIAVGLPF 721
>gi|340717629|ref|XP_003397282.1| PREDICTED: Fanconi anemia group J protein homolog [Bombus
terrestris]
Length = 976
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 150/586 (25%), Positives = 246/586 (41%), Gaps = 86/586 (14%)
Query: 72 YCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVD 131
Y TRT ++E+ + EL+ RH K + I LSSR++ C+ E +
Sbjct: 334 YGTRTHKQIEQVVRELR---KTSYRH-----KKMTI-LSSREHTCIQ------ETTKNKT 378
Query: 132 AACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP------GVYTLQDLRAFGK 185
C + N + C F+ K A ++ ++DL A GK
Sbjct: 379 ELCND---------LLDTQNHKGCPFYNESNKKIIATFRGAKSRGLDDIWDIEDLVAIGK 429
Query: 186 QQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE---SVVVFDEAHNIDNV 242
+G CPYF AR +++ A+++ Y Y++DP I + MQ + V++ DEAHNI+++
Sbjct: 430 NEGLCPYFAARSLMEHADIIFCPYNYIVDPD----IRESMQLDVAGHVIILDEAHNIEDI 485
Query: 243 CIEALSVSVRRQTLEG-ATRNLSRINQEIERFKATDA---GRLRAEYNRLVEGL--ALRG 296
C E SVS R L AT S + Q +A D+ G L+ +LV L +
Sbjct: 486 CREVASVSFREDHLTAVATECESLMKQ-----RAADSEIYGTLQTYSLKLVNFLKTTVVD 540
Query: 297 NLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVS 356
+ LS+P L E N + L + N KE
Sbjct: 541 KVGYNSDNLSSPYWTGAELLELFNMNGLNEAMYTSFL----GACNAAIADSNRAKEERRI 596
Query: 357 FVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDF-ATLVGTYTRGFS 415
F + K L + LM T+ + + E+++ DF A + T + F
Sbjct: 597 FQKVLQPVISPTTKKL------IEQLMFTIRMITSSEYMN-----DFRACITETTVKDFK 645
Query: 416 IIIEP--FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
E ++ L+L C + + P+ + +S+++ SGTLSP +F
Sbjct: 646 YATENTWLSSKVCTQRVRTLKLLCMNPGVTFAPLARQARSIILASGTLSPT------ASF 699
Query: 474 HPVVSRSFKMSLTRDCICP------MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEM 527
+ SF L + P + + +G +++ + + + G +L+++
Sbjct: 700 QSELGTSFAHVLNTGHVIPKEQVYAICIPQGPNEVKLRANYQSVNSWAFQDELGAVLLDV 759
Query: 528 VSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYR-- 585
VP GI+CFF SY+ M + W ++ I +I K +FIE + + + YR
Sbjct: 760 CESVPHGILCFFSSYNVMHTQMQRWINNSIWTKITSVKQIFIEPRHGGDLKDIMYEYRQV 819
Query: 586 --KACDCGR----GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ D R GA+F +V RGKVAEGIDF + R VI G+P+
Sbjct: 820 IEQTSDKQRGKITGALFLAVFRGKVAEGIDFKDNEARCVITVGIPY 865
>gi|317151049|ref|XP_001824411.2| ATP-dependent RNA helicase CHL1 [Aspergillus oryzae RIB40]
Length = 858
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 140/597 (23%), Positives = 249/597 (41%), Gaps = 97/597 (16%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHN------------YQTRHLGPAAKILAIGLSSRKNL 115
+K++YC+RT ++ + +EL+ ++ T L + L++G SRKNL
Sbjct: 201 IKILYCSRTHSQLTQFASELRRVNMPSSIPKDFSEGVADTDGLQEGVRHLSLG--SRKNL 258
Query: 116 CVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNI---ETCEFFENYEKAASAAVLPP 172
C+N RV + +N ++ C L + P + + C F + E A
Sbjct: 259 CINPRVSSLDNVTAISERC----------LDMQQPGVAAEQRCPFLPSNENEAQVLQFRD 308
Query: 173 GVYT----LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
V ++D+ GK G CPY+ +R + + + +V Y LL + + K
Sbjct: 309 HVLATVKDIEDIGKLGKDIGICPYYASRSVTKHSEIVTLPYPLLLQRSARDALDLSI-KG 367
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---AEY 285
VVV DEAHN+ + SV++ TL +L ++ +FK G+ R A+
Sbjct: 368 HVVVIDEAHNLMDAISNIHSVTI---TLSELQTSLFQLTTYARKFKTRLKGKNRNYIAQV 424
Query: 286 NRLVEGLA--LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGR 343
RLV + L+ L + A P PSD++ I +L +YLR
Sbjct: 425 IRLVTSITDHLKTILETSQA-PEGPVQPSDLMSGKGVDQINPY--------KLCRYLR-- 473
Query: 344 LETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL-EITDTDEFLHIQTICD 402
E++ K S + A D+K + S +L L ++ + +I+ D
Sbjct: 474 -ESKLARKVDGYSEFSRERADRQADRKPSTPVLFHIQSFLLPLMNLSAEGKLFYIKAQGD 532
Query: 403 FATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLS 462
++++P ++ + + D ++V++ GT+S
Sbjct: 533 IQLKY--------MLLDPMNQ--------------------FREIVDDARAVILAGGTMS 564
Query: 463 PIDLYPRLLNFHPVVSRSFKMSLTRDCICP------MVLTRGSDQLPVSTKFDMRSDPGV 516
P+ Y + + P V S + + + P VL +G F+ R +
Sbjct: 565 PMTDY--IHHLFPYVPSSRLGTFSYGHVIPPENLIAQVLGKGVTGTEFDFTFETRDSERM 622
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN-------DSGILKEIMQHKLVFI 569
+ G+ + + ++PDG+V FF SY Y+ ++++ W + + I K +
Sbjct: 623 IVDLGRTMAALCQVIPDGVVAFFPSYDYLSQVLSIWKRTLAGEKNRTVYDLIEGKKTILH 682
Query: 570 ETQDV-VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
E++DV + T L Y GRGA+ SV GK++EGI+F GR V++ G+PF
Sbjct: 683 ESRDVTISTEELLQEYASIVGSGRGALLLSVVGGKLSEGINFSDRLGRGVLIVGLPF 739
>gi|238506092|ref|XP_002384248.1| DNA helicase, putative [Aspergillus flavus NRRL3357]
gi|220690362|gb|EED46712.1| DNA helicase, putative [Aspergillus flavus NRRL3357]
Length = 777
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 140/597 (23%), Positives = 249/597 (41%), Gaps = 97/597 (16%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHN------------YQTRHLGPAAKILAIGLSSRKNL 115
+K++YC+RT ++ + +EL+ ++ T L + L++G SRKNL
Sbjct: 120 IKILYCSRTHSQLTQFASELRRVNMPSSIPKDFSEGVADTDGLQEGVRHLSLG--SRKNL 177
Query: 116 CVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNI---ETCEFFENYEKAASAAVLPP 172
C+N RV + +N ++ C L + P + + C F + E A
Sbjct: 178 CINPRVSSLDNVTAISERC----------LDMQQPGVAAEQRCPFLPSNENEAQVLQFRD 227
Query: 173 GVYT----LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
V ++D+ GK G CPY+ +R + + + +V Y LL + + K
Sbjct: 228 HVLATVKDIEDIGKLGKDIGICPYYASRSVTKHSEIVTLPYPLLLQRSARDALDLSI-KG 286
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---AEY 285
VVV DEAHN+ + SV++ TL +L ++ +FK G+ R A+
Sbjct: 287 HVVVIDEAHNLMDAISNIHSVTI---TLSELQTSLFQLTTYARKFKTRLKGKNRNYIAQV 343
Query: 286 NRLVEGLA--LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGR 343
RLV + L+ L + A P PSD++ I +L +YLR
Sbjct: 344 IRLVTSITDHLKTILETSQAP-EGPVQPSDLMSGKGVDQINPY--------KLCRYLR-- 392
Query: 344 LETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL-EITDTDEFLHIQTICD 402
E++ K S + A D+K + S +L L ++ + +I+ D
Sbjct: 393 -ESKLARKVDGYSEFSRERADRQADRKPSTPVLFHIQSFLLPLMNLSAEGKLFYIKAQGD 451
Query: 403 FATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLS 462
++++P ++ + + D ++V++ GT+S
Sbjct: 452 IQLKY--------MLLDPMNQ--------------------FREIVDDARAVILAGGTMS 483
Query: 463 PIDLYPRLLNFHPVVSRSFKMSLTRDCICP------MVLTRGSDQLPVSTKFDMRSDPGV 516
P+ Y + + P V S + + + P VL +G F+ R +
Sbjct: 484 PMTDY--IHHLFPYVPSSRLGTFSYGHVIPPENLIAQVLGKGVTGTEFDFTFETRDSERM 541
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN-------DSGILKEIMQHKLVFI 569
+ G+ + + ++PDG+V FF SY Y+ ++++ W + + I K +
Sbjct: 542 IVDLGRTMAALCQVIPDGVVAFFPSYDYLSQVLSIWKRTLAGEKNRTVYDLIEGKKTILH 601
Query: 570 ETQDV-VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
E++DV + T L Y GRGA+ SV GK++EGI+F GR V++ G+PF
Sbjct: 602 ESRDVTISTEELLQEYASIVGSGRGALLLSVVGGKLSEGINFSDRLGRGVLIVGLPF 658
>gi|357631598|gb|EHJ79067.1| FancJ-like protein [Danaus plexippus]
Length = 830
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 142/583 (24%), Positives = 260/583 (44%), Gaps = 84/583 (14%)
Query: 70 LIYCTRTVHEMEKTLAEL-KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
+ Y RT ++E+ + E K ++ A L LSSR++ C+ + +
Sbjct: 198 IYYGARTHKQLEQVVQEFSKTVY---------AENALMTILSSREHSCI--KDFDIKRWP 246
Query: 129 SVDAACRKRTASWVRALAAENPNIET-CEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQ 187
S + CR T + + + ET C +++N++ + + P ++L+ L + G+++
Sbjct: 247 SKNDMCRGCTKN------QNSSDSETSCVYYDNHKLLKHSTL--PRAFSLETLLSVGRKK 298
Query: 188 GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEAHNIDNVCI 244
CPY+ AR M A++V Y YL++P I K MQ + +VV+ DEAHNI+++C
Sbjct: 299 KACPYYAARKMAAVAHIVFCPYSYLIEP----AIRKSMQINLENNVVIIDEAHNIEDICR 354
Query: 245 EALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA-LRGNLPIADA 303
EA + + + +E A ++ KA A R + ++ + L+ +L
Sbjct: 355 EAATFTFTKLQMENA----------LKEMKA--ASSFRFANDEAIDYITYLQTSLEEWCL 402
Query: 304 WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITA 363
W +N L + P N +E+ V + + ET N G +
Sbjct: 403 WFAN----QKPLLDNQPRNGAASEYAWDVHQFV--------ETLNNHSIGQKQY-PEFNK 449
Query: 364 HAGIDQKTLRFCYERLHSLMLTLEITDTDEFL--HIQTICDF-----ATLVGTYTRGFSI 416
HAGI FC + L + IT + + ++ T+ + T + Y
Sbjct: 450 HAGI------FCKKFRDDPRLLVGITQSTNTIIENLDTVLGYLFRNSGTCMDDYKPILVR 503
Query: 417 IIEPFDERMPH-----------IPDPV-LQLSCHDASLAVKPVFDRFQSVVITSGTLSPI 464
IE +D H +P+ + L L C + ++ V + VV+ SGTL+P+
Sbjct: 504 KIESYDASYNHNWRKSNFEQKVLPESLSLTLCCLNPAVLFASVLSS-RCVVLASGTLTPM 562
Query: 465 -DLYPRL-LNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGK 522
L+ L +F VS ++++S R + + +++ +K+ S+ V + G+
Sbjct: 563 ASLHSELGTHFTHAVSATYEISKDRVWVGSLKSGTSGEKICCISKYTSVSN--VQDDLGE 620
Query: 523 LLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALD 582
++ + + P G++CF SY M+ ++ W S + + + K VF+E+ + +
Sbjct: 621 MVYGVCDVTPHGVLCFLPSYRLMNLLVKRWRYSHLWERLEAKKHVFVESTHMKTHVNMMK 680
Query: 583 NYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ RGA+ +V RGKVAEG+DF H R VI G+P+
Sbjct: 681 AFDNCVGTDRGALLLAVYRGKVAEGMDFKDHQARAVIAIGIPY 723
>gi|213404244|ref|XP_002172894.1| fanconi anemia group J protein [Schizosaccharomyces japonicus
yFS275]
gi|212000941|gb|EEB06601.1| fanconi anemia group J protein [Schizosaccharomyces japonicus
yFS275]
Length = 847
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 129/552 (23%), Positives = 230/552 (41%), Gaps = 92/552 (16%)
Query: 104 ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEK 163
+ AI L+SRKNLC+N V + ++ C + + P ++ +++
Sbjct: 252 VRAISLASRKNLCINENVKRLGSAALINEKCIE--------IQGNCPFLQATTPIDDFRD 303
Query: 164 AASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISK 223
A A V+ ++D+ G+Q CPY+ R + A++V Y LL +
Sbjct: 304 AVLAEVM-----DMEDMITLGEQTQTCPYYGIREAIAPAHIVAVPYAMLLQQSTRDSLGI 358
Query: 224 EMQKESVVVFDEAHN-IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR 282
+ +++V + DEAHN ID++C LS SV + + + L ++RF +G R
Sbjct: 359 SL-RDNVCILDEAHNVIDSIC-SILSASVSQTEVLLCQKQLQCY---LQRFAKRLSGPNR 413
Query: 283 AEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRG 342
+L +R + LHV RL
Sbjct: 414 MHIQQL----------------------------------LRIVDELLHVFERLAGQ--- 436
Query: 343 RLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERL------HSLMLTLEITDTDEFLH 396
E + F+A T + + T ++ + TLE D D H
Sbjct: 437 ----EACTIDPATLFIAHGTDQINLHRLTQYISASKIARKANTFHVKNTLEAEDADHSRH 492
Query: 397 --------IQTICDFATLVGTYTRGFSII--IEPFDERMP-HIPDPVLQLSCHDASLAVK 445
I + F T + + + +E +E + H VL+ + D S +
Sbjct: 493 AVPTGTPVIMKLATFLTAIANPSPEGRLFYRMESVEETVQGHNSKAVLEYALLDPSHEIA 552
Query: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS----LTRDCICPMVLTRGSDQ 501
+ ++ +SV++ GT+SP+D +LL F + R + S + IC +VL++G+
Sbjct: 553 ALAEQARSVILAGGTMSPMDEIAQLL-FPSFLDRVKQFSCGHIVPESNICTVVLSKGTGG 611
Query: 502 LPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEI 561
P + R D ++ G+ ++ + +++PDG+V FF S+ ++ E I+ W S + +
Sbjct: 612 TPFRFTYKNRGDVNALQDLGRTMLNLTAVIPDGVVVFFCSFRHLSEAISCWKKSDLWLRL 671
Query: 562 MQHKLVFIETQDVVETTLALDNYRK--------ACDCGRGAVFFSVARGKVAEGIDFDRH 613
+ K +F E D LA D +K + G+G + SV G+++EGI+F
Sbjct: 672 CKRKPIFYE--DKEREALAGDGSKKSVFEDYCASVTAGKGGLLLSVINGRLSEGINFSDR 729
Query: 614 YGRLVIMFGVPF 625
GR V + G+PF
Sbjct: 730 LGRCVAVVGMPF 741
>gi|100913202|ref|NP_085911.2| probable ATP-dependent RNA helicase DDX11 isoform 1 [Homo sapiens]
Length = 906
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 149/600 (24%), Positives = 241/600 (40%), Gaps = 68/600 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQLAQ------FVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDME 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 397
Query: 239 IDNVCIEALSVSVR-RQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA-LRG 296
+ + SV V Q + ++ L + + +R KA + L+ L + +A L G
Sbjct: 398 LIDTITGMHSVEVSGSQLCQAHSQLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLGG 457
Query: 297 NLPIADAWLSNPALPS------------DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL 344
N+ NP S D L ++ NI + V R + + R
Sbjct: 458 NIK------QNPNTQSLSQTGTELKTINDFLFQSQIDNI----NLFKVQRYCEKSMISRK 507
Query: 345 ETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLE------ITDTDEFLHIQ 398
E+ G V AG Q +L + + +HIQ
Sbjct: 508 LFGFTERYGAVFSSREQPKLAGFQQFLQSLQPRTTEALAAPADESQASTLRPASPLMHIQ 567
Query: 399 TICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITS 458
F + T + +I+ R + L+ + ++ V ++VVI
Sbjct: 568 ---GFLAALTTANQDGRVILS----RQGSLSQSTLKFLLLNPAVHFAQVVKECRAVVIAG 620
Query: 459 GTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
GT+ P+ D +LL VV S + D I P+V+ G P+ F R
Sbjct: 621 GTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRE 680
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE-- 570
P + G++L + +VP G+VCFF SY Y+ ++ A W G+L + K +F E
Sbjct: 681 LPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPK 740
Query: 571 -TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
V + LA +AC R GA+ SV GK++EGI+F + GR V+M G+PF
Sbjct: 741 SAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDNLGRCVVMVGMPF 800
>gi|403159247|ref|XP_003319882.2| hypothetical protein PGTG_00794 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168014|gb|EFP75463.2| hypothetical protein PGTG_00794 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 826
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 136/625 (21%), Positives = 267/625 (42%), Gaps = 87/625 (13%)
Query: 43 PTGTGKTIALLSLITSYVLSKPENP--------VKLIYCTRTVHEMEKTLAELKLLHNYQ 94
P G +++ ++ Y KP++ VK+ + +RT ++ + ++E+
Sbjct: 175 PNGLPRSVQ--EMLDKYTGPKPQHREVELEPDCVKIYFTSRTHSQLNQFISEI------- 225
Query: 95 TRHLGPAAKILAIGLSSRKNLCVNSRVL-AAENRDSVDAACRKRTASWVRALAAENPNIE 153
R K+ I L SR NLC+N V A+ ++++ AC S R P+++
Sbjct: 226 -RKTTFQDKVRVITLGSRANLCINRSVRDKAQTLEAINEACMDLQKSDKRC--PHLPSLD 282
Query: 154 TCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLL 213
+ ++ A A + + +++L G+ Q CPY+ +R V+ A +V Y LL
Sbjct: 283 EQDRMNDFRDHALAQI-----HDIEELAELGRVQNCCPYYGSRKAVRRAQIVTLPYNLLL 337
Query: 214 DPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL-SRINQEIER 272
+ ++K +VV+ DEAHN+ + + +VS+ + + + +N+ +
Sbjct: 338 QNSSREALGISLEK-NVVIVDEAHNLIDSILGIRAVSLSNTLISQIHKAFDTYVNKFSPK 396
Query: 273 FKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPG----------- 321
K T+ L+ R+ + L L + W N P+ + E
Sbjct: 397 LKGTNLAHLK-HLLRVFKCL-----LNFSKNWSKN-VPPNKVRHEETVTTNTLLENSGVL 449
Query: 322 ---NIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYER 378
N+ E +LH + + + + +VEK+ + A ++ + TL + +
Sbjct: 450 DQLNVLELEKYLHESKIINKVAGYATKGADVEKKNQSAQQAD--SNFSRSRSTLVTAFYK 507
Query: 379 LHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCH 438
+ + +L + D D + + + A+ T T + ++
Sbjct: 508 MQAFILAMSNADKDGRILMVSERSTASDQPTITIKYQLL--------------------- 546
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP--MVLT 496
DAS + + +SVV+ GT++P+D + L P VS + + I P +L
Sbjct: 547 DASSSFSDIVSEARSVVLAGGTMAPLDDFHSQL--FPFVSPEKILDFSCSHIVPPEHLLV 604
Query: 497 RGSDQLPVST----KFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW 552
R + P+ T KF + DP + + G+ + + +I+ DG++CFF SY+ +D + W
Sbjct: 605 RAVSKGPMGTNLQLKFSSKDDPKMQNDLGQSVANICNIIKDGVICFFPSYASLDTLTDRW 664
Query: 553 NDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD-------CGRGAVFFSVARGKVA 605
+G+ + K +FIE + + L+ Y A + G + +V GK++
Sbjct: 665 KKTGLWTRLENKKKIFIEPKSAADVDKILNGYSAAVNQSTNPTSVSGGGLMLAVVGGKLS 724
Query: 606 EGIDFDRHYGRLVIMFGVPFQYTLS 630
EGI+F + R VI+ G+P+ + S
Sbjct: 725 EGINFSNNLCRAVIVIGIPYPNSQS 749
>gi|239613258|gb|EEQ90245.1| ATP-dependent RNA helicase chl1 [Ajellomyces dermatitidis ER-3]
gi|327357445|gb|EGE86302.1| ATP-dependent RNA helicase chl1 [Ajellomyces dermatitidis ATCC
18188]
Length = 851
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 141/631 (22%), Positives = 275/631 (43%), Gaps = 105/631 (16%)
Query: 46 TGKTIALLSLITSYVLSK-----PENPVKLIYCTRTVHEMEKTLAELKLLH--------- 91
+ T+ALL ++ +S+ P++ +++ YC+RT ++ + EL+ +
Sbjct: 139 SADTLALLEKLSGDPVSRSADCEPDDEIQVFYCSRTHSQLTQFAHELRRVKLPPSVPPEV 198
Query: 92 ----------NYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
++ L + K L++G SRK LC+N +V A N +++ C
Sbjct: 199 DDHDATADSASHPDDTLEESMKHLSLG--SRKTLCINPKVRALGNSTAINERC------- 249
Query: 142 VRALAAENPNI---ETCEFFENYEKAASAAVLP----PGVYTLQDLRAFGKQQGWCPYFL 194
L + P + C+F N E V ++D+ G + G CPY+
Sbjct: 250 ---LEIQRPETLAEQRCQFVLNKENETLVNDFRDHTLAKVRDIEDIGKIGSKIGVCPYYA 306
Query: 195 ARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQ 254
+R +++++ +V Y LL ++ + K VV+ DEAHN+ + S+S+
Sbjct: 307 SRSIIKYSEIVTLPYPLLLQRSAREALNISL-KNHVVIIDEAHNLMDAISNIHSMSLSLT 365
Query: 255 TLEGATRNLSRINQEIERFKATDAGRLR---AEYNRLVEGLALRGNLPIADAWLSNPAL- 310
++ A L+ + ++K +GR R + RLV ++ + + L
Sbjct: 366 QVQLAIYQLTTYAR---KYKTRLSGRNRVYVTQVIRLVNSISDYLKTVLERKQPTEGVLQ 422
Query: 311 PSDIL--KEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGID 368
PSDI+ K N + +LH RL + + G +E ++E + T +
Sbjct: 423 PSDIMTGKGVDQINPHKLSRYLHE-SRLARKVDGFIEKSSMESQA--------TTDKKVT 473
Query: 369 QKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHI 428
Q ++ ++ + S +++L ++ L + +
Sbjct: 474 QLSVPVLFQ-VQSFLISLMNPSSEGKLFYEISQN-------------------------- 506
Query: 429 PDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID-----LYPRLLNFHPVVSRSFKM 483
D +L+ D + + + + ++V++ GT+SP+D L+P LN + + S+
Sbjct: 507 -DVLLKYMLLDPTNHFREIVEDARAVILAGGTMSPMDDYVEHLFP-YLNADRLKTFSYGH 564
Query: 484 SLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYS 543
+ D + + +++G+ + R+D + + G+ + + ++PDG+V FF SY
Sbjct: 565 VIPPDNLTAIPVSKGAFNTEFDFTYGKRNDENMIIDLGRTIAALCRVIPDGVVVFFPSYD 624
Query: 544 YMDEIIATWND------SGILKEIMQHKLVFIETQDVVETTLA-LDNYRKACDCGR--GA 594
Y+++++ W S I+ I + K+VF E+QD L +Y A + G GA
Sbjct: 625 YLNQVLVIWKKQAPNTRSNIIDSIEKSKVVFHESQDKTTNIDGLLQDYSSAINGGSRGGA 684
Query: 595 VFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ SV GK++EGI+F GR VI+ G+PF
Sbjct: 685 LLLSVMGGKLSEGINFSDKLGRGVIVVGLPF 715
>gi|261188545|ref|XP_002620687.1| ATP-dependent RNA helicase chl1 [Ajellomyces dermatitidis SLH14081]
gi|239593171|gb|EEQ75752.1| ATP-dependent RNA helicase chl1 [Ajellomyces dermatitidis SLH14081]
Length = 851
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 141/631 (22%), Positives = 275/631 (43%), Gaps = 105/631 (16%)
Query: 46 TGKTIALLSLITSYVLSK-----PENPVKLIYCTRTVHEMEKTLAELKLLH--------- 91
+ T+ALL ++ +S+ P++ +++ YC+RT ++ + EL+ +
Sbjct: 139 SADTLALLEKLSGDPVSRSADCEPDDEIQVFYCSRTHSQLTQFAHELRRVKLPPSVPPEV 198
Query: 92 ----------NYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
++ L + K L++G SRK LC+N +V A N +++ C
Sbjct: 199 DDHDATADSASHPDDTLEESMKHLSLG--SRKTLCINPKVRALGNSTAINERC------- 249
Query: 142 VRALAAENPNI---ETCEFFENYEKAASAAVLP----PGVYTLQDLRAFGKQQGWCPYFL 194
L + P + C+F N E V ++D+ G + G CPY+
Sbjct: 250 ---LEIQRPETLAEQRCQFVLNKENETLVNDFRDHTLAKVRDIEDIGKIGSKIGVCPYYA 306
Query: 195 ARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQ 254
+R +++++ +V Y LL ++ + K VV+ DEAHN+ + S+S+
Sbjct: 307 SRSIIKYSEIVTLPYPLLLQRSAREALNISL-KNHVVIIDEAHNLMDAISNIHSMSLSLT 365
Query: 255 TLEGATRNLSRINQEIERFKATDAGRLR---AEYNRLVEGLALRGNLPIADAWLSNPAL- 310
++ A L+ + ++K +GR R + RLV ++ + + L
Sbjct: 366 QVQLAIYQLTTYAR---KYKTRLSGRNRVYVTQVIRLVNSISDYLKTVLERKQPTEGVLQ 422
Query: 311 PSDIL--KEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGID 368
PSDI+ K N + +LH RL + + G +E ++E + T +
Sbjct: 423 PSDIMTGKGVDQINPHKLSRYLHE-SRLARKVDGFIEKSSMESQA--------TTDKKVT 473
Query: 369 QKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHI 428
Q ++ ++ + S +++L ++ L + +
Sbjct: 474 QLSVPVLFQ-VQSFLISLMNPSSEGKLFYEISQN-------------------------- 506
Query: 429 PDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID-----LYPRLLNFHPVVSRSFKM 483
D +L+ D + + + + ++V++ GT+SP+D L+P LN + + S+
Sbjct: 507 -DVLLKYMLLDPTNHFREIVEDARAVILAGGTMSPMDDYVEHLFP-YLNADRLKTFSYGH 564
Query: 484 SLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYS 543
+ D + + +++G+ + R+D + + G+ + + ++PDG+V FF SY
Sbjct: 565 VIPPDNLTAIPVSKGAFNTEFDFTYGKRNDENMIIDLGRTIAALCRVIPDGVVVFFPSYD 624
Query: 544 YMDEIIATWND------SGILKEIMQHKLVFIETQDVVETTLA-LDNYRKACDCGR--GA 594
Y+++++ W S I+ I + K+VF E+QD L +Y A + G GA
Sbjct: 625 YLNQVLVIWKKQAPNTRSNIIDSIEKSKVVFHESQDKTTNIDGLLQDYSSAINGGSRGGA 684
Query: 595 VFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ SV GK++EGI+F GR VI+ G+PF
Sbjct: 685 LLLSVMGGKLSEGINFSDKLGRGVIVVGLPF 715
>gi|71018229|ref|XP_759345.1| hypothetical protein UM03198.1 [Ustilago maydis 521]
gi|46099195|gb|EAK84428.1| hypothetical protein UM03198.1 [Ustilago maydis 521]
Length = 1496
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 151/613 (24%), Positives = 258/613 (42%), Gaps = 80/613 (13%)
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHL-GPAAKILAIGLSSRKNLCVNSRV 121
+PE ++IY +RT ++ + +AELK Q + I I L SRK +C+N V
Sbjct: 238 EPETLPRVIYASRTHSQLSQFVAELKKTSFGQVDIIHAETLPIRTIPLGSRKQMCINEDV 297
Query: 122 LAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP------PGVY 175
R+ A +R ++ + C +++ + +L V
Sbjct: 298 QRI-GRNKGSEAMNERCIELIKGKTGKT----KCSSLPPFDQTGRSRILEFRDAAMAEVG 352
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
++DL GKQ CPYF AR + A ++ Y LL + ++ +V+ DE
Sbjct: 353 DIEDLVQLGKQTNTCPYFAARSSAKQAELITLPYNLLLQKDARNALGISLEG-CIVLVDE 411
Query: 236 AHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALR 295
AHN+ + + SV++ Q +++ +++I+ + A RL+ + + +R
Sbjct: 412 AHNLIDTILSTHSVTIDSQ-------QIAQASEQIDTYLDKFALRLKGSNEQNLR--KVR 462
Query: 296 GNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVE----- 350
L A+ S K+A G AE L LV+ L G L+ N+
Sbjct: 463 KVLSSMSAFFS---------KKAAEGKTN-AELVLSAAD-LVRSLTGNLDQINLVTLETW 511
Query: 351 -KEGPV-----------SFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEF---- 394
KE + S +A A A ++Q + H L LE D
Sbjct: 512 LKETQIARKISGYADKHSKMAVQQAAASVNQHNGTRTNKSRHPPKLLLENASPDSIRSAS 571
Query: 395 ------LH-IQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPV 447
+H I+T +L G ++ + ++ QL + S + +
Sbjct: 572 QSAISSMHAIETF--ILSLANRSEDGRVVLSSATNSAGENVVRAKYQL--LNPSHVFRSL 627
Query: 448 FDRFQSVVITSGTLSPI-DLYPRLLNFHP---VVSRSFKMSLTRDCICPMVLTRGSDQLP 503
D +SV++ GT+ P+ D +LL F P +V+ S + + VL+ LP
Sbjct: 628 VDEARSVILAGGTMEPMSDFRQQLLPFVPPDRLVTFSCGHIIPASNLMVSVLSASPKGLP 687
Query: 504 VSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS---GILKE 560
KFD R + + G+ LV + +IVP G+V F SY+++D+++A W D+ G+L+
Sbjct: 688 FEFKFDSRDNVELIDELGRTLVNVCNIVPAGLVVFVPSYAFLDKLMARWKDAASGGLLQR 747
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACDC--------GRGAVFFSVARGKVAEGIDFDR 612
+ K +FIE + +E L Y A GA+ F+V K++EGI+F
Sbjct: 748 LGSKKKIFIEPKTTMEVDKVLGEYTAAIRAKDVKTGVSSGGAIMFAVVGAKLSEGINFSD 807
Query: 613 HYGRLVIMFGVPF 625
+ R V+M G+PF
Sbjct: 808 NLARGVVMVGMPF 820
>gi|145349251|ref|XP_001419051.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579282|gb|ABO97344.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1067
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 171/694 (24%), Positives = 281/694 (40%), Gaps = 128/694 (18%)
Query: 10 VYFPYDNIYPEQYSYMLELKRALDAKGHC-LLEMPTGTGKTIALLSLITSYVLSKPE--- 65
V FP Y Q M + RA +G C L+E PTG+GKT+ALL ++ S+ E
Sbjct: 43 VRFPL-TPYKSQVQVMSAVVRAA-RRGTCALVESPTGSGKTLALLCAALAWSESESERRE 100
Query: 66 --------------------------NPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG 99
P K+ Y TRT ++ + + EL
Sbjct: 101 DVGVDDDEDGEEDEARKRETKRIGNGKPPKIYYATRTHAQIAQIVGELSRT--------- 151
Query: 100 PAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFF- 158
A K + L+SR++ CVN +A V+A CR+ + A + + C +
Sbjct: 152 -AYKPHTVVLASREHYCVNK---SARKGGDVNAECRR-----LMDAGAAGGDGKGCFYSG 202
Query: 159 ENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVA 218
+ K AS A P ++DL G + CPYF ++ M + A ++ Y YLLDP+
Sbjct: 203 QGASKLASLAKNHPDALDIEDLVKMGTSKKGCPYFASKIMAESAELIFCPYNYLLDPRTR 262
Query: 219 GIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDA 278
+ +++ S+++FDEAHNI++ EA S + + A LS +
Sbjct: 263 SAMDIDIEG-SLIIFDEAHNIEDTAREAASEEIILDDVANAIDRLSEM------------ 309
Query: 279 GRLRAEYNRLVEGLALRGNLPIADAWLS--NPALPSDILKEAVPG--NIRRAEHFLHVL- 333
R RA N L LR + D ++ + PS LK+A + R E L L
Sbjct: 310 -RRRATANVSECELVLRSMKGVYDWFIGFCDEKSPSYGLKQAQEALSAMVRGEQILQTLA 368
Query: 334 ------RRLVQYLR--GRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLT 385
+++ +R G + N E + P VA C + L+ +
Sbjct: 369 EAGLTEESVLEVMRALGVITKYNQENKDPKERVAG---------SVFNTCEKVLNPIKFL 419
Query: 386 L---EITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASL 442
L E+T D + + +V T + P +E + + + +L
Sbjct: 420 LSRGEVTARDYKIVFTKTRESDRVVSTQRVNSELNRLPVEELVK------INFWALNPAL 473
Query: 443 AVKPVFDR---FQSVVITSGTLSPIDLYPRLLN--FHPVVSRSFKMSLTRDCICPMVLTR 497
A + + +SVV+TSGTL+P++ + L F + + + R + ++
Sbjct: 474 AFRELVSENGGARSVVLTSGTLAPLNSFASELGVPFPIRMEAPHCVDMDRQ-VWGGIVAA 532
Query: 498 GSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGI 557
G + ++ + R D G L ++ + P G++ FF SYS ++ I+ W ++G+
Sbjct: 533 GPSNIALNAGYKSRGDTSFQDELGACLRDVAKVTPHGLLMFFPSYSLLETIVRRWRETGL 592
Query: 558 LKEIMQ--HKLVFIE-------TQDVVETTLALDNYRKACDCG----------------- 591
L+ I Q K +F E + V L+ Y A
Sbjct: 593 LRAIEQASGKKIFQEPGKSCSYGKKPVTLETVLEKYYSAVATSVKAAKHPYAPAPANAKC 652
Query: 592 RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
RGA+ F+V RGK++EGIDF R VI G+P+
Sbjct: 653 RGAILFAVCRGKISEGIDFADANARAVICVGIPY 686
>gi|255539256|ref|XP_002510693.1| brca1 interacting protein helicase 1 brip1, putative [Ricinus
communis]
gi|223551394|gb|EEF52880.1| brca1 interacting protein helicase 1 brip1, putative [Ricinus
communis]
Length = 1248
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 166/713 (23%), Positives = 281/713 (39%), Gaps = 140/713 (19%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDA---KGHC--LLEMPTGTGKTIALLSLIT 57
+ + + V FPY P Q ++M + LD GHC LLE PTGTGK+++LL
Sbjct: 19 YHIGGIQVEFPYQPYGP-QLAFMGRVISTLDRAVRDGHCHALLESPTGTGKSLSLLCSTL 77
Query: 58 SY-------------VLSKPENPVKLI--------YCTRT------------------VH 78
++ SKP NP + + T V
Sbjct: 78 AWQQNYKSKQQLADLTQSKP-NPEAITDPIGHGGGFIPETQPSSIPPSGNLEAAQPAAVS 136
Query: 79 EMEKTLAELKLLHNYQT---------RHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDS 129
+ +K A + ++ +T + A ++ L+SR++ C N+ V EN
Sbjct: 137 KTQKKKAAPTIFYSSRTHGQITQVIREYRKTAYRVPMAVLASRRHYCTNAHVNGKEN--- 193
Query: 130 VDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG----VYTLQDLRAFGK 185
+D C+ L ++P+ C F+N K L G V+ ++DL GK
Sbjct: 194 IDEECK---------LLLKDPDA-GCLQFKNAHKVKGHPSLQRGGCHEVHDIEDLVKVGK 243
Query: 186 QQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIE 245
C Y+ AR M A +V Y Y+++P + G + ++ + ++++ DEAHNI+++ +
Sbjct: 244 VVRGCSYYAARSMADDAQLVFCPYNYVINPVIRGAMEIDI-RGAILILDEAHNIEDIARD 302
Query: 246 ALSVSVRRQTLEGATRNLSRI---NQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
A SV V L L ++ N I + L + ++ L G
Sbjct: 303 AGSVDVEEDILYKLQTELEQLCVHNTSIYQPLYEMTQDLLSWIDQRKSTLQKHGFQHYFS 362
Query: 303 AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASIT 362
+W + A L+E NI + + F +L ++ ++ +TE +S +A I
Sbjct: 363 SWSGDKA-----LRELQEANISQ-QCFPILLDCALKAIKAATDTE--PDIAHLSGMAVIV 414
Query: 363 AHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFD 422
T F H ++D L D + VG +T S
Sbjct: 415 LEGLFSSLTYFFSRNGCH-------VSDYQLALQRHIKRDRKSPVGEWTLTLS------- 460
Query: 423 ERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFK 482
L C + ++ + + D SV++TSGTLSP++ + L
Sbjct: 461 ------------LWCLNPAVVFRDIADLSLSVILTSGTLSPMNSFSSELGVQFGTCLEAP 508
Query: 483 MSLTRDC-ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVS 541
+ + + V++ G D P++ + + GK L E+ IVP G + FF S
Sbjct: 509 HVIDNESQVWAAVISTGPDNYPLNASYKTADEFAFQDALGKTLEEICMIVPAGSLVFFPS 568
Query: 542 YSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVE---TTLALDNYRKACDC-------- 590
Y M+++ W ++G + K +F+E + E ++ Y C C
Sbjct: 569 YKLMEKLCNRWRETGQWSRLNAKKSLFVEPRGSQEEEFDSVLKGYYDSICKCNTHAVGRK 628
Query: 591 ------------------GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
G+GA F +V RGKV+EG+DF R+VI+ G+PF
Sbjct: 629 KRVKRLDLKKAVESTENLGKGAAFLAVCRGKVSEGMDFSDDNARVVIVVGIPF 681
>gi|167384070|ref|XP_001736798.1| regulator of telomere elongation helicase 1 rtel1 [Entamoeba dispar
SAW760]
gi|165900684|gb|EDR26949.1| regulator of telomere elongation helicase 1 rtel1, putative
[Entamoeba dispar SAW760]
Length = 1030
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 155/655 (23%), Positives = 278/655 (42%), Gaps = 113/655 (17%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLI 71
FPY Y Q M +++A+ H L+E PTGTGKT+ LL L+ P+ ++++
Sbjct: 85 FPYQPPYQPQIEMMNSIQQAVKEGKHLLMESPTGTGKTLVLLH----STLTFPD--MRIV 138
Query: 72 YCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVD 131
Y +RT ++ + + E T+ +G I I L+SR C+ + + ++++
Sbjct: 139 YASRTHSQLAQVVNE--------TKKIG---DIKGIVLASRDLYCIYNPIRICDDKNY-- 185
Query: 132 AACRKRTASWVRALAAENPN-------IETCEF--FENYEKAASAAVLP--------PGV 174
W A PN I+ C + F N K V+ GV
Sbjct: 186 ---------WCTA----KPNVLETLKHIKPCPYRPFGNDGKVLPNVVMACQAVYKELNGV 232
Query: 175 YTLQD-LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAG------IISKEMQK 227
+QD L ++ CPY+ +R + + +++ Y ++ + I ++ +
Sbjct: 233 IKIQDDLVKVCQKHNLCPYYYSRWATKRSKLILCPYNFVTSVSIRHSSDIFLIDENDIHR 292
Query: 228 -ESVVVFDEAHNIDNVCIEALSVS----VRRQTLEGATRNLSRINQEIERFKATDAGRLR 282
E V+V DEAHN+++ +++L+ + + +T+E + RI Q E F++ L
Sbjct: 293 HEFVLVMDEAHNVEDAFMDSLTFTFTETLLNRTIETIQFHQKRIKQTPENFRSFS---LL 349
Query: 283 AEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRG 342
E +E ++ W+ N +LP ++ + G + + FL + R
Sbjct: 350 GELISTIESFSI---------WMENRSLPFKDSEQCLYG-VFEDQAFLPFIERSPS--ST 397
Query: 343 RLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICD 402
RL E V + + + + F + + ++ +++ T +
Sbjct: 398 RLTEAIFEYIKLVDNLDDLIQEPHLIRYVNPFTTQYIEMVLFYIQVFRTPKL-------- 449
Query: 403 FATLVGTYTRGFSIII-EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTL 461
T+ F III E D R + C SL + + +SV+ SGTL
Sbjct: 450 --------TKFFKIIITERNDLRE-------MLFRCLSPSLPMSLLQREVRSVIFASGTL 494
Query: 462 SPIDLYPRLLNFHP------VVSRSFKMSLTRDCICPM-VLTR--GSDQLPVSTKFDMRS 512
SP+ + LN ++S ++M T+ + P V R GS S F ++
Sbjct: 495 SPMKAMAQELNIKEHLYKNIIISPGYRMLSTQHVVPPSHVFGRVIGSSSFGKSFIFTKKT 554
Query: 513 --DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE 570
D + G + ++S P G + FF SYS ++ ++ W G+ ++ + K +FIE
Sbjct: 555 SQDNEMIEQAGNTMFRVLSKSPGGGLVFFASYSMLNRVVELWKQQGVYTQLNKLKAIFIE 614
Query: 571 TQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
++D E Y+ GAVF V RGK++EGIDF R+VI+ G+P+
Sbjct: 615 SKDKNEFKKDFKEYQILSKT--GAVFLGVFRGKLSEGIDFGDDMARVVIIVGIPY 667
>gi|121799524|sp|Q2U587.1|CHL1_ASPOR RecName: Full=ATP-dependent RNA helicase chl1; AltName:
Full=Chromosome loss protein 1
gi|83773151|dbj|BAE63278.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 721
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 158/663 (23%), Positives = 272/663 (41%), Gaps = 120/663 (18%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTG--TGKTIALLSLITSYVLSKPENP- 67
Y PYD Q +M L ++ + E PTG G + L L+ + +P
Sbjct: 12 YSPYDI----QLQFMRALYSCIEKGKVAVFESPTGKLAGLSTGTLELLKRFQHKSSAHPR 67
Query: 68 ---------VKLIYCTRTVHEMEKTLAELKLLHN------------YQTRHLGPAAKILA 106
+K++YC+RT ++ + +EL+ ++ T L + L+
Sbjct: 68 QDEDYGDEDIKILYCSRTHSQLTQFASELRRVNMPSSIPKDFSEGVADTDGLQEGVRHLS 127
Query: 107 IGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAAS 166
+G SRKNLC+N RV + +N ++ C V AAE + C F + E A
Sbjct: 128 LG--SRKNLCINPRVSSLDNVTAISERCLDMQQPGV---AAE----QRCPFLPSNENEAQ 178
Query: 167 AAVLPPGVYT----LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS 222
V ++D+ GK G CPY+ +R + + + +V Y LL +
Sbjct: 179 VLQFRDHVLATVKDIEDIGKLGKDIGICPYYASRSVTKHSEIVTLPYPLLLQRSARDALD 238
Query: 223 KEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR 282
+ K VVV DEAHN+ + SV++ TL +L ++ +FK G+ R
Sbjct: 239 LSI-KGHVVVIDEAHNLMDAISNIHSVTI---TLSELQTSLFQLTTYARKFKTRLKGKNR 294
Query: 283 ---AEYNRLVEGLA--LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLV 337
A+ RLV + L+ L + A P PSD++ I +L
Sbjct: 295 NYIAQVIRLVTSITDHLKTILETSQAP-EGPVQPSDLMSGKGVDQINPY--------KLC 345
Query: 338 QYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL-EITDTDEFLH 396
+YLR E++ K S + A D+K + S +L L ++ + +
Sbjct: 346 RYLR---ESKLARKVDGYSEFSRERADRQADRKPSTPVLFHIQSFLLPLMNLSAEGKLFY 402
Query: 397 IQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVI 456
I+ D ++++P ++ + + D ++V++
Sbjct: 403 IKAQGDIQLKY--------MLLDPMNQ--------------------FREIVDDARAVIL 434
Query: 457 TSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP------MVLTRGSDQLPVSTKFDM 510
GT+SP+ Y + + P V S + + + P VL +G T+FD
Sbjct: 435 AGGTMSPMTDY--IHHLFPYVPSSRLGTFSYGHVIPPENLIAQVLGKGV----TGTEFDF 488
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW-------NDSGILKEIMQ 563
+ R+ ++ ++PDG+V FF SY Y+ ++++ W + + I
Sbjct: 489 TFE---TRDSERM------VIPDGVVAFFPSYDYLSQVLSIWKRTLAGEKNRTVYDLIEG 539
Query: 564 HKLVFIETQDV-VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFG 622
K + E++DV + T L Y GRGA+ SV GK++EGI+F GR V++ G
Sbjct: 540 KKTILHESRDVTISTEELLQEYASIVGSGRGALLLSVVGGKLSEGINFSDRLGRGVLIVG 599
Query: 623 VPF 625
+PF
Sbjct: 600 LPF 602
>gi|123491434|ref|XP_001325843.1| helicase [Trichomonas vaginalis G3]
gi|121908748|gb|EAY13620.1| helicase, putative [Trichomonas vaginalis G3]
Length = 747
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 144/637 (22%), Positives = 266/637 (41%), Gaps = 92/637 (14%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M + +V+++FPY YP Q +YM ++ + D + +LE PTGTGKT++LL + S+
Sbjct: 1 MDVNINEVSIHFPYKP-YPLQETYMSKVIESCDTGNYAILESPTGTGKTLSLLCSVLSWR 59
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ ++IY +RT ++ + ELK P I+A SR LC++
Sbjct: 60 QQR-NTSSRIIYSSRTHSQLSNVIKELK------RTKFQPTTSIIA----SRTYLCLH-- 106
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
+N ++++ + R + R L +N I ++N K + + +L D+
Sbjct: 107 ----DNIQKMESSLQSR---FCRELRQKNQCI-----YDNESKIEQVS--KKVINSLLDI 152
Query: 181 RAF---GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+F + + CP+F+++ V+ A+ ++ Y Y+ DP + + +SVV+FDEAH
Sbjct: 153 DSFVDICRNEAVCPFFVSQFNVKTADFILSPYTYIADPISRSSLPSVVFNKSVVIFDEAH 212
Query: 238 NIDNVCIEALSVSVRRQTL----EGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
N C E S+SV +R S + E+ F T + N + + L
Sbjct: 213 NFPEQCCEYFSMSVPFNKFCVLRSFLSRQQSNVIGEVVTFGITSVELAKEFSNLVCDKLE 272
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
L + L N D + + R F +L+ + +
Sbjct: 273 LLRKEIHQNFVLKNAKFLFDFFSKC-KIDYRTIRPFKRLLKAFL--------------DN 317
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
PV + S +D L L+ D FL+ + + + + YT
Sbjct: 318 PVLYCLSQNEQESLD---------------LILQFFD---FLYHENKRNESLIDNFYTIS 359
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLN 472
S D + C A + + + +++++TSGTL+P++ +
Sbjct: 360 LST-------------DHCFNIYCFTPEKAFSEIVNLQPRTIILTSGTLAPLETFASYFG 406
Query: 473 FH-PVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIV 531
+ P++ + ++ + + G +S + R+D L ++ S+
Sbjct: 407 YKFPIILENPHIAKPEQLLV-ICCGEGPFGNRLSFTYANRNDNQQKVELKSALSKLFSLS 465
Query: 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCG 591
P+G + FF S+S + E + I K +FIE + + + + +++
Sbjct: 466 PNGSLVFFPSFSSLSEF--------DVHSIDTKKKIFIEPRTFGDFSSIVSQFKENAVKE 517
Query: 592 RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
GA F+V RGK++EGIDF Y R V + G+PF T
Sbjct: 518 EGAALFAVCRGKMSEGIDFSDDYARSVFVVGIPFPNT 554
>gi|345319470|ref|XP_001519583.2| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like, partial [Ornithorhynchus anatinus]
Length = 226
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 90/140 (64%)
Query: 273 FKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHV 332
K TD RL EY RLVEGL G DA L+NP LP IL+EAVPG+IR AEHF+
Sbjct: 87 IKETDEQRLHEEYRRLVEGLREAGAARETDAHLANPVLPDAILQEAVPGSIRTAEHFVGF 146
Query: 333 LRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTD 392
LRRL+++L+ RL ++ +E P +F+ + I K LRFC ERL SL+ TLEI+D
Sbjct: 147 LRRLLEFLKWRLRVQHAVQESPAAFLGGLAQRVCIPPKPLRFCAERLRSLLHTLEISDLT 206
Query: 393 EFLHIQTICDFATLVGTYTR 412
+F + + +FATLV TYT+
Sbjct: 207 DFSPLTLLANFATLVSTYTK 226
>gi|389852278|ref|YP_006354512.1| DNA repair helicase rad3 [Pyrococcus sp. ST04]
gi|388249584|gb|AFK22437.1| DNA repair helicase rad3 [Pyrococcus sp. ST04]
Length = 639
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 152/633 (24%), Positives = 280/633 (44%), Gaps = 113/633 (17%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLL-EMPTGTGKTIALLSLITSYVLSKPENPVK 69
YFPY ++ P Q + +EL R KG L+ E PTG GKTI++L+ + Y +S K
Sbjct: 4 YFPYKSLRPNQKEF-IELVRESVKKGESLIVEAPTGFGKTISVLAGVLPYAIS---FGYK 59
Query: 70 LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLA-AENRD 128
+IY RT +M++ + ELK + + A++ + SRK+LC++S + A++
Sbjct: 60 VIYLARTHKQMDRVIEELKAIRS--------VARVSGVEFRSRKDLCLHSYIQTFAQDAY 111
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ------DLRA 182
+ C+ +R L C+FFEN K+ V + L+ ++
Sbjct: 112 TSMIVCKS-----LRKLG-------KCQFFENI-KSKKEQVKEIIEFFLERPSFPSEVLE 158
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEAHNI 239
+ + CPY + R + + ANV+V SY Y+++P + + + +++FDEAHN+
Sbjct: 159 YSQLLELCPYEITRKVGEKANVIVASYLYMINPWIRQAFMDSLGVDYSDLIIIFDEAHNV 218
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQ-EIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+ I ALS + +++E A + + +IE+F L YN+ +E N
Sbjct: 219 PDQAISALSDRLSVRSIERAIKEAHEYGEDDIEQFLLVFLKGLEIIYNKRLE------NY 272
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVL----RRLVQYLRGRLETENVEKEGP 354
+ P P +I EH L +L + LV+ + +E + +E
Sbjct: 273 ETPEV----PLKPEEIF-----------EHPLFILGYSSKDLVEIINYMVEIGDAIREDK 317
Query: 355 VSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGF 414
+ ++ G + F + L + +++LH+ ++R
Sbjct: 318 IERNLPPRSYVG---RVGEFLWN-------WLSLAGREDYLHL------------FSRER 355
Query: 415 SIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFH 474
++ +E L D S+A+ S + SGTL+P++ + ++
Sbjct: 356 NLALE---------------LVALDPSVALD-FLKEVHSAIFMSGTLTPLEAFRDIIGVE 399
Query: 475 PVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDG 534
+ +M + + I +++ R VST+ + RS P + + + ++E VSI+P
Sbjct: 400 AKTKKFPRMVKSENAI--VLVARD-----VSTRGEERS-PSLYKKIAEYILEAVSIIPKN 451
Query: 535 IVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV--ETTLALDNYRKACDCGR 592
+ F SY ++ I++T I ++I K VFIE +D E + ++K
Sbjct: 452 VGVFTASYEVLEGILSTNVHIKIEEDI--GKKVFIEKKDATSRENDAMIAEFKKEAK-KE 508
Query: 593 GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GAV F V G+ +EG D+ V++ G+P+
Sbjct: 509 GAVLFGVMGGRNSEGQDYSGDEMNGVVLVGIPY 541
>gi|328853665|gb|EGG02802.1| hypothetical protein MELLADRAFT_38383 [Melampsora larici-populina
98AG31]
Length = 791
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 143/593 (24%), Positives = 252/593 (42%), Gaps = 104/593 (17%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLA-AE 125
P + + +RT ++ + ++EL+ G +++A+G SR NLCVN V A+
Sbjct: 164 PRSIYFTSRTHSQLSQFVSELR------KTSFGLGTRLIALG--SRSNLCVNEEVKKKAK 215
Query: 126 NRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGK 185
+ ++++ AC + PN + E V +++L + GK
Sbjct: 216 SLEALNEACTDLQKGVL-------PNDLNLSYARQSE-----------VRDIEELASLGK 257
Query: 186 QQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN-IDNVCI 244
++G CPY+ AR ++ A +V Y LL + + ++V++ DEAHN IDNV +
Sbjct: 258 ERGVCPYYGARKALRQAQIVTLPYNLLLQKSSRNALGISLT-DNVIIVDEAHNLIDNV-L 315
Query: 245 EALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAW 304
S S+ LE +N +I I++F+ G +LV GN
Sbjct: 316 AIHSTSISSNFLE-LVKNSFKI--YIKKFEKKLKGSNLVHLQQLVRVFECLGNY------ 366
Query: 305 LSNPALPSDILKEAVPGNIRRAEHFLHV--------------LRRLVQYLRGRLETENVE 350
D L +A+P N+ + E + + L +YL E++ +
Sbjct: 367 -------CDELAKALPKNLGKHEEIITTNSLLQKTGVLDLLNMHDLEEYLN---ESKIIN 416
Query: 351 K-EGPVSFVASITAHAGIDQKTLRF------CYERLHSLMLTLEITDTDEFLHIQTICDF 403
K G + V ++ + D K + + R+ S ML L + D
Sbjct: 417 KISGYATKVETVMNNTDSDDKAFKTRSTFVTGFYRIQSFMLALSNAEKD----------- 465
Query: 404 ATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSP 463
++ + R + DE+ + L+ + S + V +SV++ GT++P
Sbjct: 466 GRVLSSSERSST------DEKKVVV---TLRYQLLNPSETFRDVASEARSVILAGGTMAP 516
Query: 464 I-----DLYPRLLNFHPVVSRSFKMS--LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGV 516
I L+P L P F + + ++ + V+ G + P+ KF R D +
Sbjct: 517 ISDFRTQLFPYL---GPDQFLEFACAHIVPQENLLVRVVPHGPSKTPLELKFASRGDNKL 573
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVE 576
+ G+ + + ++V DGIVCFF SY+ +D + W SG+L + K VF E + +
Sbjct: 574 LDDLGQSISNICNVVKDGIVCFFPSYAILDSLRDRWKTSGLLSRLENRKKVFNEPKSSAD 633
Query: 577 TTLALDNYRKACDC----GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L +Y A GA+ F+V GK++EGI+F R VI+ G+P+
Sbjct: 634 VETTLKDYASAITSPTLPQTGALLFAVVGGKLSEGINFSNELCRAVIVIGIPY 686
>gi|388854508|emb|CCF51895.1| related to CHL1-protein of the DEAH box family [Ustilago hordei]
Length = 931
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 144/619 (23%), Positives = 256/619 (41%), Gaps = 89/619 (14%)
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHL-GPAAKILAIGLSSRKNLCVNS-- 119
+PE ++IY +RT ++ + +AELK Q L + I L+SRK +C+N
Sbjct: 234 EPETLPRIIYASRTHSQLSQFVAELKKTSFGQVDVLDAEKMPVRTIALASRKQMCINQDV 293
Query: 120 -RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP------P 172
R+ + + ++++ C + L C +++ A +L
Sbjct: 294 QRIASIKGSEAMNERCLE--------LIKAKKGKGRCALLPTFDQVGRAEILEFRDAAMA 345
Query: 173 GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
V ++DL G CPYF AR + A +V Y LL + + K +V+
Sbjct: 346 EVGDIEDLVQLGISTKTCPYFAARSSAKQAELVTLPYNLLLQKDARQSLGISL-KGCIVL 404
Query: 233 FDEAHNIDNVCIEALSVSV-RRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEG 291
DEAHN+ + + SV++ RQ ++ + + +++ R K + LR + +++
Sbjct: 405 IDEAHNLIDTILSTHSVTIDSRQIIQASKQIEMYLDRFALRLKGNNEQNLR-KVKKVLSA 463
Query: 292 L-------ALRG------------------------NLPIADAWLSNPALPSDILKEAVP 320
L A +G NL + WL + I A
Sbjct: 464 LSTFFSKHATKGKGNSDVVMSLTDMLGAMMGSVDQVNLVTLETWLKETQIARKISGYAEK 523
Query: 321 GNIRRAEHF-LHVLRRLVQYL-RGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYER 378
+ AE +L Q + R T+ + K+ + + T+ +GI Q + +
Sbjct: 524 RKKKTAEQAEAAMLANTNQNASKNRATTKRLPKKADLE-QGACTSQSGIGQSGISSMHA- 581
Query: 379 LHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCH 438
+ + +L+L D + + + D T G +I+ + P
Sbjct: 582 IEAFILSLANRSEDGRVVLTSTLDSNT-------GETIVRAKYQLLNP------------ 622
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLNFHP---VVSRSFKMSLTRDCICPMV 494
S K + D +SV++ GT+ PI D +LL F P +V+ S + + V
Sbjct: 623 --SHVFKSLVDEARSVILAGGTMEPISDFRQQLLPFLPSDRLVTFSCGHVIPPSNLMVSV 680
Query: 495 LTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND 554
L+ LP K D R + + GK LV + +I+P G+V F SY+++D+++A W D
Sbjct: 681 LSSSPKGLPFEFKLDSRDNTDMLDQLGKTLVNLCNIIPAGLVVFVPSYAFLDKLMARWKD 740
Query: 555 SG---ILKEIMQHKLVFIETQDVVETTLALDNYRKACDC-----GRGAVFFSVARGKVAE 606
+ +L+ + K +FIE + ++ L Y A G GA+ +V K++E
Sbjct: 741 AASGQVLQRLSAKKKIFIEPKTTMQVDKVLAEYTAAIRAEQGRGGGGAIMLAVVGAKLSE 800
Query: 607 GIDFDRHYGRLVIMFGVPF 625
GI+F R V+M G+PF
Sbjct: 801 GINFSDDLARGVVMVGMPF 819
>gi|449519585|ref|XP_004166815.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
homolog [Cucumis sativus]
Length = 1041
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 146/628 (23%), Positives = 259/628 (41%), Gaps = 107/628 (17%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQTRHLGP 100
P+ +L+S T L P N ++ T++ +T +++ +++ Y+
Sbjct: 123 QPSSKNIKGSLVSTDTESSLPGPNNKIRKKKTAPTIYYSSRTHSQISQVIREYRK----T 178
Query: 101 AAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFEN 160
A ++ L+SRK+LC N RV +D++D C+ L ++ + C F+N
Sbjct: 179 AYRVPMAVLASRKHLCTNPRV---RGKDNLDEKCK---------LLLKDQDA-GCSEFKN 225
Query: 161 YEKAASAAVLPPG----VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPK 216
K L G V+ +QDL G+ C Y+ AR M A +V Y Y+++P
Sbjct: 226 GNKVKCHPTLQKGGRHEVHDIQDLVKTGEAVKGCSYYAARSMAYNAQLVFCPYSYIINPV 285
Query: 217 VAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR---INQEIERF 273
+ I ++ K+++V+FDEAHNI+++ SV + TL L + IN + +
Sbjct: 286 IRRAIGVDV-KDAIVIFDEAHNIEDIARHGGSVDIEEDTLNKLQMELEQLCFINYLVYQP 344
Query: 274 KATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVL 333
L++ +R L R W N A +E NI + + F +L
Sbjct: 345 LYEMTQDLKSWIDRRKTTLQEREFQHYVTCWTGNHAQ-----RELQEANITQ-QCFPILL 398
Query: 334 RRLVQYLRGRLETENVEKEGPVSFVASITAH-AGIDQKTLRFCYERLHSLMLTLEITDTD 392
+ + S+ S AH +G+ +LTLE
Sbjct: 399 ECATKATKA------------ASYTVSDDAHLSGLS--------------VLTLEGL--- 429
Query: 393 EFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIP----DPVLQLSCHDASLAVKPVF 448
++ F + G + + + ++ + +R P L L C + ++ + +
Sbjct: 430 ----FSSLTYFFSRNGCHMSDYQLALQRYTKRDPEKACAKWTVTLSLWCLNPAVVFRDIG 485
Query: 449 DRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSL-------TRDCICPMVLTRGSDQ 501
D SV++TSGTLSP++ +F + F SL + P +++ G
Sbjct: 486 DLSLSVILTSGTLSPLN------SFSSELGVRFGTSLEAPHVIDVESQVWPAIISIGPGN 539
Query: 502 LPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEI 561
P++ + GK L E+ I P G + FF SY M+++ W+++G +
Sbjct: 540 YPLNASYKTADGYAFQDALGKSLEEIFFIAPGGCLVFFPSYKLMEKLRNRWSETGQWSRL 599
Query: 562 MQHKLVFIE----TQDVVETTLAL--------------------DNYRKACDCGRGAVFF 597
K +F+E Q+ ++ L ++Y C+ +GA
Sbjct: 600 NARKSLFVEPCGGAQEDFDSILKGYYDTIRLGDNFAVGKKVKPDESYVFGCENPKGAALL 659
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+V RGKV+EGIDF R+VI+ G+PF
Sbjct: 660 AVFRGKVSEGIDFSDDNARVVIIVGIPF 687
>gi|58264204|ref|XP_569258.1| CHL1 helicase [Cryptococcus neoformans var. neoformans JEC21]
gi|57223908|gb|AAW41951.1| CHL1 helicase, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 849
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 142/564 (25%), Positives = 247/564 (43%), Gaps = 84/564 (14%)
Query: 100 PAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFE 159
P+ + + L SRK LC+N +V A R E N E C +
Sbjct: 227 PSHGVSLVPLGSRKQLCINEKVRA-----------------LARNGGDERMN-EACLDMQ 268
Query: 160 NYEKAASAAVLPP------GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLL 213
KA +L V ++D+ GK+ CPY+ R V+ + +V Y LL
Sbjct: 269 KSAKADEITMLDARDTILASVKDIEDIVTMGKKSCVCPYYATRKAVKQSQIVTLPYNLLL 328
Query: 214 DPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERF 273
+ ++ K VVV DEAHN+ + + ++ L A +S++ Q ++RF
Sbjct: 329 QKNSHEALGIKL-KNQVVVIDEAHNLIDTLLSIHCTTLTSTNLANA---VSQLQQYLQRF 384
Query: 274 KATDAGRLRAEYNRLVEGLA--LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLH 331
K+ RL+ ++ ++ + L+G + + D + + + KE+ P + E L
Sbjct: 385 KS----RLKPIHSLWIQQILSLLQGLIRVCDKFFQDAKSQT---KESKPVGKPKVE-VLD 436
Query: 332 VLRRLVQYLRGRLETENVE-----KEGPVS-----FVASITAHAGI-DQKTLRFCYERLH 380
V + + G + +E KE ++ F + A + D KT R R
Sbjct: 437 VNNLMGRIGGGSDQVNPIELLAYLKESRLARKISGFSEHVAEQAALKDAKTSRSATARHA 496
Query: 381 SLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII-IEPFDERMPHIPDPVLQLSCHD 439
S+ F ++++ +LV G I+ I+ D+ P + V++ +
Sbjct: 497 SIAA---------FHNVESF--LLSLVDAKDDGRIILSIDDLDKSEPVV---VIKYVLLN 542
Query: 440 ASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP------M 493
S K V + +SV++ GT+ PI + L P + + +L+ + P
Sbjct: 543 PSERFKEVVEEARSVILAGGTMEPITDF--LQQLFPSIPKDRLSTLSCSHVIPKENLLTQ 600
Query: 494 VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN 553
V++ G + KF R+D + + G +L + +VPDG+V F SY+++D++ A W
Sbjct: 601 VVSVGPRKSEFEFKFGNRNDEALLTDLGAVLQATIGVVPDGVVVFLPSYAFLDKVRAFWT 660
Query: 554 DSGILKEIMQHKLVFIETQDV--VET-----TLALDNYRKACDCGR-----GAVFFSVAR 601
SG+L+ + + K +F E Q VET LA+ + G+ GA+ F+V
Sbjct: 661 KSGLLQRLGERKQLFYEPQTSGDVETILRDYALAISSCYATSTSGQKSRKTGALMFAVVG 720
Query: 602 GKVAEGIDFDRHYGRLVIMFGVPF 625
GK++EGI+F + GR VIM G+PF
Sbjct: 721 GKLSEGINFSDNLGRCVIMVGLPF 744
>gi|110741966|dbj|BAE98923.1| hypothetical protein [Arabidopsis thaliana]
Length = 652
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 151/679 (22%), Positives = 271/679 (39%), Gaps = 119/679 (17%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--- 59
+ + + V FP++ Y Q YM + +L K H LLE PTGTGKT+ LL ++
Sbjct: 4 YSIRGINVEFPFE-AYQSQIIYMDRVIESLQNKCHALLESPTGTGKTLCLLCATLAWRKS 62
Query: 60 ---------------VLSKPENPVK------------LIYCTRTVHEMEKTLAELKLLHN 92
S + P+ ++Y +RT ++ + + ELK +
Sbjct: 63 LGSFSTRKDRKNSAIPWSDSDEPLSQSGGGGGGAFPTIVYASRTHSQLRQVIKELKR-SS 121
Query: 93 YQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAA---CRKRTASWVRALAAEN 149
Y+ + + L SR+ LCVN V + + +A C+KR
Sbjct: 122 YRPK---------MVVLGSREQLCVNEEVNSLRGKALTNACQYLCKKRGK---------- 162
Query: 150 PNIETCEFFE---NYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
C F +Y K P ++DL GK G CPY++ R + + +++
Sbjct: 163 ---RQCNHFNRLPDYLKHNPHIGDEP--VDIEDLVNIGKDSGPCPYYITRELHKDVDIIF 217
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
Y YL+ + K SV++FDEAHN++++C ++ S + L
Sbjct: 218 APYNYLISNGYRKFL-KVNWTNSVLIFDEAHNLESLCADSASFDLPSVLLSACISEAQEC 276
Query: 267 NQ-EIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRR 325
Q R + + + E +++GL L+ L I K +P +R
Sbjct: 277 VQLAAARRDSLNDVSINPENFAILKGLLLK--------------LQELISKVPIP---KR 319
Query: 326 AEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASI-TAHAGIDQKTLRFCYERLHSLML 384
E F + Y+ L++ N+ E + ++ A ++++ R
Sbjct: 320 DEGFT----KPGPYIYEMLKSLNITHETAPKLIGTVEEAAVFLEEEKQR----------- 364
Query: 385 TLEITDTDEFLHIQTICDFATLV-----GTYTRGFSIIIEPFDER----MPHIPDPVLQL 435
T T+ ++ I D L+ + + + ++ ++ M L
Sbjct: 365 ----TATNAGSKLEIIADMLKLIFRENGSNHADVYRVHVQELEQNSTDVMKGKVSRTLSW 420
Query: 436 SCHDASLAVKPVFDRFQSVVI-TSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMV 494
C + + + + +I TSGTLSP+D + L + ++ + + V
Sbjct: 421 WCFSPGITMLDIAQKGVGSIILTSGTLSPMDSLAQELKLDFPIRLENPHVISSNQLWAGV 480
Query: 495 LTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW-- 552
++ G +++ + R P + G +V +VP+G++ FF SY MD I W
Sbjct: 481 VSTGPSGYVLNSSYRNRDVPEYKQELGNAIVNFSRVVPEGLLIFFPSYYLMDSCITFWKN 540
Query: 553 ----NDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAE 606
N + + I + K IE +D A+ ++ + G VFF+V RGKV+E
Sbjct: 541 GCYRNSMTVWERICKLKKPVIEPKDSSLFPAAMRDFSEKLQDRATSGVVFFAVCRGKVSE 600
Query: 607 GIDFDRHYGRLVIMFGVPF 625
G+DF GR V++ G+P+
Sbjct: 601 GLDFADGAGRAVVITGLPY 619
>gi|254583620|ref|XP_002497378.1| ZYRO0F04136p [Zygosaccharomyces rouxii]
gi|238940271|emb|CAR28445.1| ZYRO0F04136p [Zygosaccharomyces rouxii]
Length = 803
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 136/585 (23%), Positives = 248/585 (42%), Gaps = 96/585 (16%)
Query: 66 NPVKLIYCTRTVHEMEKTLAELKL---------LHNYQTRHLGPAAKILAIGLSSRKNLC 116
NP+K+ + +RT ++ + ++L+L + N +HL L SRK LC
Sbjct: 190 NPIKVYFASRTHSQLRQFASQLRLPIFPPSLPNVKNESIKHLP---------LGSRKQLC 240
Query: 117 VNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP---PG 173
+N +V ++ D+++ AC++ L N C+F +N
Sbjct: 241 INPQVSRLKSTDAINDACKE--------LQQNGKN--GCKFKQNINNQLEQEFRDRSFTS 290
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++ ++DL A G+ CPY+ +R + A ++ YQ+LL + ++ K SVVV
Sbjct: 291 IHDIEDLAALGQSLDICPYYASRDSLTSAEIITLPYQFLLFQSTRESLGLDL-KNSVVVI 349
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA 293
DEAHN+ + S + Q L+ L+ + +FK+ R +L++ +
Sbjct: 350 DEAHNLIDTVNAIHSSEISLQDLQSVKTGLTNY---LSKFKSRLGPGNRVNLMKLIKLI- 405
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
D+L N ++ + ++ L G +T N+ K
Sbjct: 406 -------------------DVLIIFTRQNYKKPGQVIDP----IEILSGNADTLNIHKIN 442
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLE----ITDTDEFLHIQTICDFATLVGT 409
++ I+ ++ S M ++E I + + L + I F T +
Sbjct: 443 KYIKISKISY--------------KIQSYMQSVEKDQGINNPGQPLLFK-IASFITCLTY 487
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
T+ F E+ P I +LQ + V + + V++ GT+ P+
Sbjct: 488 PTQEGKF----FFEKGPSIKYMLLQ-----PDKCFQSVLEDSRCVILAGGTMQPVS--DV 536
Query: 470 LLNFHPVVSRSFKMSLTRDCICP--MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEM 527
L N P VS + ++ + D + P + T + + F+ R P V R G+ +++
Sbjct: 537 LENLFPTVSNNQLVNFSCDHVIPDDNLGTYVLQEPQIELTFEKREQPQVLRQMGEFYLQL 596
Query: 528 VSIVP--DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYR 585
VP GIV FF SY Y+ +I W +G+ ++ + + V ET+ + L Y
Sbjct: 597 SKAVPLTGGIVGFFPSYQYLQFVIDHWKKTGLWSQLTKLRKVNYETKSGED---PLPEYT 653
Query: 586 KACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
+A D G GA+ F+V G+++EGI+F + R ++M G+PF S
Sbjct: 654 EAVDKGEGAMLFAVVGGRLSEGINFQDNLCRAIVMTGLPFPNVFS 698
>gi|432094035|gb|ELK25827.1| Regulator of telomere elongation helicase 1 [Myotis davidii]
Length = 1389
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 164/728 (22%), Positives = 274/728 (37%), Gaps = 176/728 (24%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY----- 59
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL ++
Sbjct: 6 LSGVTVDFPF-QPYKCQEEYMAKVLECLQKKVNGVLESPTGTGKTLCLLCSTLAWREHLR 64
Query: 60 ----------------VLSKP-----------------ENPVKLIYCTRTVHEMEKTLAE 86
L +P + K+IY +RT ++ + + E
Sbjct: 65 DAISARKIAERTQGDLFLDRPLSSWGNAASEGDATACYADIPKVIYASRTHSQLTQVIGE 124
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
L+ +Y+ R L SR+ LC++ V E+ CRK+ AS
Sbjct: 125 LRNT-SYRPR---------VCVLGSREQLCIHPEVKKQESNHMQIHLCRKKVAS------ 168
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 169 ------RSCHFYNNVEEKSLEQDLATPILDIEDLVKSGNRHKLCPYYLSRNLKQQADIIF 222
Query: 207 YSYQYLLDPK-----------------------------------------VAGIISKEM 225
Y YLLD K A + S+
Sbjct: 223 MPYNYLLDAKGHRLTLPCVQRLVLHVVEAPWMCPVLQHRLGPRNHADSALCQAQVSSRRA 282
Query: 226 Q----KESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRL 281
K +VV+FDEAHN++ +C E+ S + + L +I +E R A G L
Sbjct: 283 HGIDLKGTVVIFDEAHNVEKMCEESASFDLTPHDVASGLDVLDQILEEQSR--AAQQGEL 340
Query: 282 RAEY--------NRLVEGLA--------LRG-----NLPIADAWLSNPALPSDILKEAVP 320
R E+ N +E +A L G LP D ++ P L
Sbjct: 341 RLEFSADANSGLNMELEDIAKLKMILLRLEGAIDAVELPGGDGGVTKPGSYIFELFAEAQ 400
Query: 321 GNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLH 380
++ L L +++Q+L GR G + A + A I Q
Sbjct: 401 ITLQTKGCILESLDQIIQHLAGR--------AGLFTHTAGLQKLADIIQ----------- 441
Query: 381 SLMLTLEITDTDEFLHIQTICDFATLV--GTYTRGFSIIIEPFDERMPHIPDPVLQLSCH 438
++ + + + + + + + T RG + + + VL C
Sbjct: 442 -MVFSTDPAEGSSPVGPEASLSYKVHIHPDTSHRGTAHRSDAWSSTASRRQGKVLSYWCF 500
Query: 439 DASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTR 497
++ V +++++TSGTL+P+ + + V + + I ++ R
Sbjct: 501 SPGCCMRELVRQGVRTLLLTSGTLAPVSSFALEMQIPFPVCLENPHVIDKHQIWVGIVPR 560
Query: 498 GSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGI 557
G D +S+ FD R + GK LV + +VP G++ FF SY +++ + W G
Sbjct: 561 GPDGAQLSSAFDKRFSDECLSSLGKALVNITRVVPHGLLVFFPSYPVLEKSLEFWRVMGA 620
Query: 558 LKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRL 617
+ A RGA F +V RGK +EG+DF GR
Sbjct: 621 YYAAV------------------------ASPGSRGAAFLAVCRGKASEGLDFADVNGRG 656
Query: 618 VIMFGVPF 625
V++ G+P+
Sbjct: 657 VVVTGLPY 664
>gi|255088938|ref|XP_002506391.1| predicted protein [Micromonas sp. RCC299]
gi|226521663|gb|ACO67649.1| predicted protein [Micromonas sp. RCC299]
Length = 644
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 173/685 (25%), Positives = 278/685 (40%), Gaps = 126/685 (18%)
Query: 6 EDVT--VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY---- 59
E+VT V FPYD Y Q + M + AL A + LLE PTGTGKT+ LL +
Sbjct: 13 EEVTYSVDFPYD-AYDCQVTMMERVVEALHAGENALLESPTGTGKTLCLLCAALGWREKA 71
Query: 60 -----------------------VLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTR 96
P+ ++Y +RT ++ + + EL+ Y+ R
Sbjct: 72 HAGGGPDDVTVGPDARAAAAARGDDRAPDRGPLIVYASRTHSQLAQVIRELRATR-YRPR 130
Query: 97 HLGPAAKILAIGLSSRKNLCVNS--RVLAAENRDSVDAACRKRTASWVRALAAENPNIET 154
+AI + SR+ +CV+ RVLA ++ AAC+ RT S R+ A N
Sbjct: 131 --------MAI-MGSRQQMCVHKDVRVLAGAAQN---AACKARTQS--RSCAHHN----E 172
Query: 155 CEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCP------YFLARHMVQFANVVVYS 208
E F E ++DL G++ YF++ M + A++V
Sbjct: 173 LEHFRRREPNFGR----DDPVDIEDLVKLGERGVVGGGCGPCPYFMSLDMYKEADIVFMP 228
Query: 209 YQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQ 268
Y Y++DP + ++ + ++V+FDEAHNI++VC +A + L A IN+
Sbjct: 229 YNYVVDPAMRDVLGDRLDG-AIVLFDEAHNIESVCSDAAGFDIPASHLAQA------INE 281
Query: 269 EIERFKATDAG---------RLRAEYNRLVEGLALRGNLPIADAWLSNP---ALPSDILK 316
E F+A A R AEY +L G+ L +A +N P + L
Sbjct: 282 AQEAFEAAGADPGADARKPPRPAAEYKQL-RGVLLALEDKVAAQVGNNGEECVKPGEWLF 340
Query: 317 EAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCY 376
E + +++ E L +++ + Q S +A A G + Y
Sbjct: 341 ELL-ASLKITEQTLEMIKSIAQ--------------DAASLLAGEAAAVGQRSRARASGY 385
Query: 377 ERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPD----PV 432
R++ L LE+ F + F + I + R P
Sbjct: 386 -RINELAEALELA-------------FRARREGHVGSFRLRIGADESRGGFGAGHGAGPT 431
Query: 433 LQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
L C S+ + + ++ +SV++TSGTLSP+ + L + V + +
Sbjct: 432 LSFWCFSPSVTMSHLAEKGVKSVILTSGTLSPMSSFASELGLNFRVRLENPHVVAPHQVW 491
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
V+ G +++ + R G ++V IVPDG++ FF SY M +
Sbjct: 492 GGVVPVGPSGKRLNSTYRFRDTDEYKSELGNVVVNFARIVPDGMLVFFPSYGVMRACVEH 551
Query: 552 WNDSG---ILKEIMQHKLVFIETQDVVETTLALDNYRKACDC--------GRGAVFFSVA 600
W ++G I + I K +E E A + A + GA FF+V
Sbjct: 552 WRNTGTPSIWERICASKHAVVEPSGKEEFREAFKEFNDALEATPGGGAGGRNGAAFFAVC 611
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPF 625
RGKV+EGIDF GR V++ G+P+
Sbjct: 612 RGKVSEGIDFADKAGRCVVLTGIPY 636
>gi|332158988|ref|YP_004424267.1| DNA repair helicase rad3 [Pyrococcus sp. NA2]
gi|331034451|gb|AEC52263.1| DNA repair helicase rad3 [Pyrococcus sp. NA2]
Length = 638
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 153/629 (24%), Positives = 277/629 (44%), Gaps = 105/629 (16%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
YFPY + P Q ++ ++ ++ + ++E PTG GKTI++L+ + Y +S K+
Sbjct: 4 YFPYKTLRPNQKEFIELVRESVRKGENIIIEAPTGFGKTISVLAGVLPYAISL---GYKV 60
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
IY RT +M++ + ELK++ A++ I SR++LC+++ + +
Sbjct: 61 IYLARTHKQMDRVIEELKMIRE--------IARVSGIEFRSRRDLCLHTYL----KNFAQ 108
Query: 131 DAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ------DLRAFG 184
DA +R L C+FFEN K +V + L+ ++ +
Sbjct: 109 DAYTSMIVCKTLRKLG-------KCKFFENI-KEKKDSVREIIEFFLESPSFPWEVIEYS 160
Query: 185 KQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEAHNIDN 241
CPY + R + + ANV+V SY Y+++P + + + + +V+FDEAHNI +
Sbjct: 161 SLLELCPYEVTRKVGEKANVIVASYLYMINPWIRQAFMESLGLDYSDLIVIFDEAHNIPD 220
Query: 242 VCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRG--NLP 299
I ALS + +T+E A + E E + D + + R +E L N
Sbjct: 221 QAISALSDRLSIRTIERAIK-------EAEEYGEKDIANFLSIFLRGLEILYREKLENYE 273
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKE-GPVSFV 358
I + LS P +I L VL +V+ + + + +E+ P S++
Sbjct: 274 IQEVPLS----PMEIFSHVASILGFETRDILMVLNDMVE-IGDAIREDRIERNLPPRSYI 328
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
+T F L+ L + D +++H+ FS
Sbjct: 329 G----------RTGEF-------LLNWLSLMDRSDYIHL----------------FS--- 352
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
ER P L+L D S+A+ + D S + SGTL+P++ + ++ +
Sbjct: 353 ---KER-----GPALELVALDPSIALDFLND-VHSAIFMSGTLTPLEAFRDIIGVQAKLK 403
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCF 538
+ ++ + + I +++ R VST+ + R+ P + + + + E V I+P + F
Sbjct: 404 KFPRIVKSENAI--VLVARD-----VSTRGEERT-PALYKKLAEYVFEAVKIIPKNVGVF 455
Query: 539 FVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV--VETTLALDNYRKACDCGRGAVF 596
SY ++ +++T I +EI K VFIE +D E + + KA GRG V
Sbjct: 456 TASYEVLEGLLSTNVHIKIEEEI--GKRVFIEKRDASSAENDAMVAEF-KAEAKGRGGVL 512
Query: 597 FSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
F V G+ +EG D+ V++ G+P+
Sbjct: 513 FGVMGGRNSEGQDYSGDEMNGVVLVGIPY 541
>gi|302889483|ref|XP_003043627.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256724544|gb|EEU37914.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 863
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 141/593 (23%), Positives = 246/593 (41%), Gaps = 84/593 (14%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELK-------LLHNYQTRHLGPAAKILAIGLSSRKNLCV 117
E +K+ Y +RT ++ + + EL+ L + + + LSSR+ LC+
Sbjct: 202 EEQIKIYYTSRTHSQLSQFITELRRPTFPPSLPTSLAKDEESKTEAVKLVPLSSRQRLCI 261
Query: 118 NSRVLAAENRDSVDAAC----RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG 173
N +V + +++ C + ++ + E+ ET +F + ++ A LP
Sbjct: 262 NPQVSRLGSVQAINDRCAELQKPKSGKKCPFVPKEDLLSETHQF-----RDSALATLP-- 314
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++DL GK CPY+ +R + A ++ Y LL + +++ SVV+
Sbjct: 315 --DIEDLHHLGKSLSVCPYYASRTALPGAEIITLPYPLLLQKSARDALGVKLEG-SVVII 371
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLS----RINQEIERFKATDAGRLRAEYNRLV 289
DEAHNI + + +R L L R ++++ + GR+ R++
Sbjct: 372 DEAHNIMDAVANVHAAEIRLSDLRRGRGMLGVYVKRFGKKLKGVNRVNVGRV----GRVI 427
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
EGL+ + + P+D+ + P I + F L+QY+
Sbjct: 428 EGLSEWMDGALKFKAKHGIVDPNDLTR---PKGIDQINMF-----ELIQYI--------- 470
Query: 350 EKEGPVSF-VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVG 408
+E ++F + S +H ++ T T LH T+ F +
Sbjct: 471 -QESKLAFKIESYASHVENEEAP-------------TKTPKSTTPVLH--TLVSFLVALT 514
Query: 409 TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID--- 465
+ I + P I L LS + A + ++VV+ GT+SP D
Sbjct: 515 NLSSEGRIFYQKIKGGAPDIQLSYLLLS---PTHAFSSIASSARAVVLAGGTMSPFDDYK 571
Query: 466 --LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP-VSTKFDMRSDPGVARNYGK 522
L+P L V + S + + +C L +P F RSDP + G
Sbjct: 572 DHLFPSL-EPEKVTTLSCGHVIPPENLCVWTLASSRPGMPPFEFSFQKRSDPEMITQLGL 630
Query: 523 LLVEMVSIVPDGIVCFFVSYSYMDEIIATW------NDSGILKEIMQHKLVFIETQDVVE 576
++ + S+VPDG+V FF SY Y+DE++A W N I + + K +F E++
Sbjct: 631 AILNLCSLVPDGVVIFFPSYGYLDEVVAAWQKSHGANAQPIWERLATRKALFKESKGASS 690
Query: 577 TTLALDNYRKACDC----GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ L Y A G+GA+ SV GK++EGI+F GR VI+ G+P+
Sbjct: 691 DEI-LQEYTNAIQGEGSNGKGALLLSVVGGKMSEGINFSDRLGRCVIVIGLPY 742
>gi|198436769|ref|XP_002122486.1| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide
11 [Ciona intestinalis]
Length = 907
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 143/599 (23%), Positives = 256/599 (42%), Gaps = 57/599 (9%)
Query: 68 VKLIYCTRTVHEMEKTLAELK---LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
++ +C+RT ++ + + EL+ +N +I L SR NLC+N V
Sbjct: 219 TRIFFCSRTHSQLSQFVKELQKSPFGNNVHCDADEGDFQITMASLGSRNNLCINDSVRKL 278
Query: 125 ENRDSVDAAC----------RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG- 173
++ + ++ C K+ + + + TC ++ N++ A G
Sbjct: 279 KSVNLMNERCLEMQKNSKPKSKKEDDQDKPKRQKKVSKSTCCYYTNHDGIAQLTNTIVGK 338
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++ ++++ GK CPY+ +RH V + +VV YQ LL K S K+SVV+
Sbjct: 339 IHDIEEVIKEGKSLEACPYYASRHAVTLSQLVVLPYQTLLH-KATRQASGIKLKDSVVII 397
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIE-RFKATD---AGRLRAEYNR-- 287
DEAHN+ S V + L A LSR ++ R KA + +L N
Sbjct: 398 DEAHNLVEALNSMHSCLVTAKQLSKAYGQLSRYAKKFNSRLKARNLFYVKQLLYVLNNMM 457
Query: 288 -LVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLR-----RLVQYLR 341
L++G++L + S +D L ++ NI +F +LR ++ + L
Sbjct: 458 VLLKGMSLESDSKENRQKSSQLLTVNDFLFKSKIDNI----NFFKLLRYCERSKISRKLG 513
Query: 342 GRLETENVEKEGPVSFVASITAHAGIDQKTLRF-CYERLHSLMLTLEITDTDEFLHIQTI 400
G +E E +G V + + K ++ + S ++ + +HI+++
Sbjct: 514 GFVE--KFETDGIVPIITKKESSMTTFLKDIKNPVVPSVPSSKPNENVSMSSPLMHIESL 571
Query: 401 CDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGT 460
FA L G ++ D+ P + +L + H + + + +++++ GT
Sbjct: 572 --FAALSSANQDGR--VVMTHDDSGPAVKYLLLNPASH-----FQQILEECRALIVAGGT 622
Query: 461 LSP----IDLYPRLLNFHPVVSRSFKMSLT-----RDCICPMVLTRGSDQLPVSTKFDMR 511
+ P ID SR + S + + P+ L+ G + F R
Sbjct: 623 MQPSSCLIDQLLAKTESEKHRSRIVEFSCGHVIDGKRQLLPLALSSGPSGVEFEFTFQKR 682
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
S+ + G+LL+ + +I+P G+VCFF SY Y ++ W D+GIL + K +F E
Sbjct: 683 SNFKLIDETGRLLLNISNIIPGGVVCFFPSYDYERFVVQRWQDAGILSRLEMKKKIFREP 742
Query: 572 QDVVETTLALDNYR---KACDCGR--GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ E L Y K G+ G + SV GK++EGI+F GR V+M G+P+
Sbjct: 743 KKANEVDKLLTEYTRCVKNVGPGKQNGGLLLSVVGGKMSEGINFSDDLGRCVVMVGLPY 801
>gi|212545032|ref|XP_002152670.1| DNA helicase, putative [Talaromyces marneffei ATCC 18224]
gi|210065639|gb|EEA19733.1| DNA helicase, putative [Talaromyces marneffei ATCC 18224]
Length = 887
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 153/652 (23%), Positives = 279/652 (42%), Gaps = 97/652 (14%)
Query: 20 EQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP------ENPVKLIYC 73
++Y E +++ G +E + + T+ALL V + EN ++ YC
Sbjct: 168 DEYESDTETAKSVSISGFSGIEGLSAS--TVALLDRFKGRVTGQKDNEGDNENQTRIYYC 225
Query: 74 TRTVHEMEKTLAELKLLH-------------NYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+RT ++ + EL+ ++ + H I + L SRK LC+N R
Sbjct: 226 SRTHSQLSQFAQELRRVNLPSSLPSLQESAEGEKQEHTELEEVIKHLTLGSRKQLCINPR 285
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAA-----SAAVLPPGVY 175
V N +++ C + S V A + C + E VL V
Sbjct: 286 VSNLGNATAINERCMELQQSGVAA-------DKRCSYLPTKESEGMLFDFRDRVLST-VQ 337
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
++D+ GKQ CPY+ AR + ++ Y LL + + ++ +V+ DE
Sbjct: 338 DIEDISQVGKQLAICPYYAARKAIDQCEIITLPYPLLLQRSSREALDLSL-RDHIVIIDE 396
Query: 236 AHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---AEYNRLVEGL 292
AHN+ + SVSV TLE +L ++ +F+ G+ R + RLV L
Sbjct: 397 AHNLMDAISNLHSVSV---TLEQLRTSLFQLTTYARKFQTRLKGKNRVYVTQVIRLVSAL 453
Query: 293 ALRGNL-PIADAWLSNPALP--SDIL--KEAVPGNIRRAEHFLHVLRRLVQYLRGRLETE 347
A NL ++D S+ + SD++ K N + +L +L + + G +E
Sbjct: 454 A--ENLQSLSDKHKSSEVIVQYSDLVSGKGVDQINPYKLTRYLQE-SKLARKVDGYVENA 510
Query: 348 NVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLV 407
N ++G V+ A + T+ ++ + S +LTL + +DE D L+
Sbjct: 511 N-NQDGKVN-----NGKATRENTTIPVLFQ-VQSFILTL-MNPSDEGQLFLNKADGGVLL 562
Query: 408 GTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY 467
++++P H D + D ++V++ GT+SP+ Y
Sbjct: 563 RY------LLLDP----TSHFRD----------------IVDEARTVILAGGTMSPMSDY 596
Query: 468 P-RLLNF---HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKL 523
L ++ + + SF + + +LT+G + FD R+ + + G+
Sbjct: 597 SDHLFSYVSPEKLDTYSFGHVIPPKNLTARILTKGVLGSDFNFTFDQRNSDSMITDLGQT 656
Query: 524 LVEMVSIVPDGIVCFFVSYSYMDEIIATW---NDSG----ILKEIMQHKLVFIETQDVVE 576
+ + +++PDG+V FF SY Y+++++ W N +G I EI ++K + E+ + +
Sbjct: 657 IANICAVIPDGVVVFFPSYDYLNQVLNAWRKPNKTGGAVSIFAEIEKYKPIVYESNNHKK 716
Query: 577 TTLALDN---YRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ D Y K + G GA+ SV G+++EGI+F GR V++ G+PF
Sbjct: 717 ESNTDDTLLEYSKKVESGSGALLLSVVGGRLSEGINFSDKLGRGVLIVGLPF 768
>gi|429329870|gb|AFZ81629.1| DNA repair helicase, putative [Babesia equi]
Length = 956
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 173/764 (22%), Positives = 307/764 (40%), Gaps = 184/764 (24%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLS---------- 54
+E V V FPY Y Q YM + +A+ + LLE PTGTGKT++L+
Sbjct: 11 IEGVEVRFPYP-PYQSQKLYMEAVIKAVKNGKNALLESPTGTGKTLSLICSSLACLLNNK 69
Query: 55 -------------------LITSYVLSK------------------PENPVKLIYCTRTV 77
+ S +L+K N + ++Y +RT
Sbjct: 70 FNNKGGFNAPTDNANNNQYTLESSLLNKMSDLRKTPVSDQKKTKLRNRNRIHIVYASRTH 129
Query: 78 HEMEKTLAEL-KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRK 136
++ + L E+ K L+ + G I A+ L SR LC+N + ++++A C+
Sbjct: 130 TQLRQVLKEVRKSLYTNEFNSKG----IKAVLLGSRDQLCINP-ARGNSSGEALNALCKN 184
Query: 137 ----RTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPY 192
R + L N E F+E + ++D+ + GK + CPY
Sbjct: 185 LVQNRKCIYHSGLKMGKVN-EDMSFYE--------------LLDIEDMVSLGKSKKCCPY 229
Query: 193 FLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVR 252
+ + + A++ + Y YLL + + +Q ++++ DEAHNI+++ A S +R
Sbjct: 230 YAVKDAHESADLTLLPYNYLLSTTIREAMELNLQG-AILIIDEAHNIESIAENAASFYIR 288
Query: 253 RQTLE---GATRNLSRINQE-IERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSN- 307
+ + A R + ++ + K D L + + LA+ +L D +LSN
Sbjct: 289 QVDIARYMAALRRFASFHKTYLNSIKNEDKEPLHSINTSALSRLAI--SLKNIDEFLSNV 346
Query: 308 -----------PALPSDILKEAVPGNIRRAE----------HFLHVL------------- 333
P D+ + I+R H L VL
Sbjct: 347 VLDEYNDAIDSPTRHDDVGRCWFVKEIKRKHIIYNAQDIVTHMLDVLGFNELRLLKVDEI 406
Query: 334 -RRLVQYL-RGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL----- 386
R+ + L G L+T ++ SF++ D KTL+ + L SL + L
Sbjct: 407 IRQSISMLSNGLLQTNQLDD----SFISHY------DNKTLQEDLQSLESLRIMLLRIFA 456
Query: 387 -EITDTDEFLHIQTICDFA-------TLVGTYTRGFSIIIE-------PFDERMPHIPDP 431
E+ ++ H+ D T T G++ I+ + HI
Sbjct: 457 KELLTCPQYFHVFITNDEKFDNSKRLTTTQPATSGWNSKIKNRQTIQYSNTKNDTHILPK 516
Query: 432 VLQLSCHDASLAVKPVFDRFQ-----SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSL- 485
+L C L P F R + S+++TSGTL+P+ + + + + + F++ L
Sbjct: 517 ILNFEC----LQAVPTFLRIKDEGVRSIILTSGTLAPLYVLEKQIGGNKL---PFEIKLQ 569
Query: 486 TRDCICP------MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
R I P +V D +S+ ++ R+ + G+ L+ + VP G++ FF
Sbjct: 570 NRHVIEPSRVWAGIVTGDKDDPHSLSSVYNTRATTPYVKALGESLLSFIKCVPSGVLVFF 629
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIET-----------QDVVE-------TTLAL 581
SY M++ ++ W G+ ++ K +FIE+ Q++ + T +
Sbjct: 630 GSYPAMNQTVSMWKQLGLYSKMEMFKSIFIESRSSELNSAENYQELSKLDSSYGLTQAQI 689
Query: 582 DNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y+ G+G++F + RGK+AEGIDF Y R V + G+P+
Sbjct: 690 MEYKSHITSGKGSIFIGICRGKIAEGIDFSDDYCRGVFVCGIPY 733
>gi|350631746|gb|EHA20117.1| ATP-dependent DNA helicase-like protein [Aspergillus niger ATCC
1015]
Length = 987
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 140/597 (23%), Positives = 244/597 (40%), Gaps = 108/597 (18%)
Query: 68 VKLIYCTRTVHEMEKTLAELK-----------LLHNYQTRHLGPAAKILAIGLSSRKNLC 116
VK+ YC+RT ++ + EL+ LL T ++ + L SRKNLC
Sbjct: 189 VKIFYCSRTHSQLTQFAGELRRVKMPWSIPKDLLSTDLTGEEELEERVKHVTLGSRKNLC 248
Query: 117 VNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIET---CEFFENYEKAASAAVLP-- 171
+N RV + EN +++ C L + PN+ C F + E
Sbjct: 249 INPRVSSLENATAINERC----------LDLQQPNVNPQHRCPFLPSKEDERQVLQFRDH 298
Query: 172 --PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
V ++DL GK+ G CPY+ +R +V+ + V + L+ V G
Sbjct: 299 ALSTVKDIEDLGKLGKKIGICPYYASRSVVKDSEVS----REALNLSVKG---------H 345
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
V++ DEAHN+ + SV+V TL +LS++ +FK G+ R+ +++
Sbjct: 346 VIIIDEAHNLMDAISNIHSVTV---TLSQLQTSLSQLTIYGRKFKTRLKGKNRSYVAQVI 402
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENV 349
+L + +LR LE+
Sbjct: 403 -----------------------------------------RLLSSIAAHLRSLLESGKA 421
Query: 350 EKEGPVSFVASITAHAGIDQ----KTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFAT 405
EGPV ++ + + G+DQ K R+ E + + + T + Q
Sbjct: 422 -PEGPV-LISELMSGKGVDQINPYKLSRYLQESKLARKVDGYVEFTRDPSDKQASRSPTV 479
Query: 406 LVGTYTRGF--SIIIEPFDERM---PHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGT 460
V + +GF S++ + R+ D L+ D + + + + +++++ GT
Sbjct: 480 PVLFHIQGFLLSLMNPSAEGRLFYSKEQGDIQLKYMLLDPTNQFRELVEDARAIILAGGT 539
Query: 461 LSPIDLYPRLLNFHPVVSR----SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGV 516
+SP+ Y L + SR S+ + + + L RG +D R +
Sbjct: 540 MSPMTDYMNHLFSYVPASRLDMFSYGHVIPPENLIAHTLVRGVQGSEFDFTYDARDSEKM 599
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE-------IMQHKLVFI 569
+ G+ + + ++PDG+V FF SY Y+ ++ W + ++ I Q K +
Sbjct: 600 IMDLGRTIATLCHVIPDGVVAFFPSYDYLGRVLNIWKKPMLGEQGQTVYNLIGQKKPILS 659
Query: 570 ETQDVVETTLAL-DNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
E++D+ TT L Y D GRGA+ SV GK++EGI+F GR V++ G+PF
Sbjct: 660 ESRDMTVTTEELLHTYANTVDSGRGALLLSVVGGKLSEGINFSDKLGRGVLIVGLPF 716
>gi|14521544|ref|NP_127020.1| DNA repair helicase rad3 [Pyrococcus abyssi GE5]
gi|5458763|emb|CAB50250.1| ERCC2/XPD/rad3 DNA repair helicase, TFIIH helicase beta subunit
homolog [Pyrococcus abyssi GE5]
gi|380742154|tpe|CCE70788.1| TPA: DNA repair helicase rad3 [Pyrococcus abyssi GE5]
Length = 637
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 157/636 (24%), Positives = 277/636 (43%), Gaps = 119/636 (18%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGH-CLLEMPTGTGKTIALLSLITSYVLSKPENPVK 69
YFPY + P Q + +EL R + +G ++E PTG GKTI++L+ + + +S K
Sbjct: 4 YFPYKTLRPHQDEF-IELVRDVVKRGEKVIIEAPTGFGKTISVLAGVLPHAIS---FGYK 59
Query: 70 LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNS--RVLAAENR 127
+IY RT +M++ + ELK + AK+ I SRK+LC++S R A +
Sbjct: 60 VIYLARTHKQMDRVIEELKRIRE--------IAKVSGIEFRSRKDLCLHSYIRTFAQDAY 111
Query: 128 DSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAA------VLPPGVYTLQDLR 181
S+ C+ + C++FEN ++ L Y + +
Sbjct: 112 TSM-IVCKSLK------------RLGKCKYFENLKEKRDKVKEIVEFFLENPSYPWEVIE 158
Query: 182 AFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES---VVVFDEAHN 238
+ CPY + R + + ANV+V SY Y+++P + + E +V+FDEAHN
Sbjct: 159 -YSNLLELCPYEVTRKVGEKANVIVASYLYMVNPWIRQAFLDGLGLEYSDLIVIFDEAHN 217
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQ-EIERFKATDAGRLRAEYNRLVEGLALRGN 297
+ + I ALS + +++E A + + + +IE F + L Y +E N
Sbjct: 218 LPDQAISALSDRLSIRSVERAIKEANEYGEKDIENFLSIFLRGLEIIYKEKLE------N 271
Query: 298 LPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVL----RRLVQYLRGRLETENVEKEG 353
I++ LS P+ I EH +L R L+++L+ +E + +E
Sbjct: 272 YEISEVPLS----PASIF-----------EHVSSILGLRERDLLRFLQEMVEVGDAIRED 316
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
+ ++ G + F + + + D ++LH V T +G
Sbjct: 317 KIERNLPPRSYVG---RVGEFLWN-------WISLADRSDYLH----------VFTREKG 356
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
+ L++ D S+A++ + D S ++ SGTLSP++ + ++
Sbjct: 357 LA-----------------LEIVALDPSVALEFLED-VHSAILMSGTLSPLEAFRDIIGV 398
Query: 474 HPVVSRSFKMSLTRDCICPM---VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSI 530
+ + + +M + + I + V TRG ++ PV + + + + E V I
Sbjct: 399 NARLKKFPRMVKSENAIVLVARDVSTRGEERSPV-----------LYKKLAEYIFEAVKI 447
Query: 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVET-TLALDNYRKACD 589
+P + F SY ++ +I+T I +EI K VFIE +D + AL KA
Sbjct: 448 IPKNVGVFTASYEVLEGLISTNVHIRIEEEI--GKKVFIEKRDASSSENDALVAEFKAEA 505
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
G G V F V G+ +EG D+ VI+ G+P+
Sbjct: 506 KGNGGVLFGVMGGRNSEGQDYSGDEMNGVILVGIPY 541
>gi|348506178|ref|XP_003440637.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Oreochromis niloticus]
Length = 897
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 146/621 (23%), Positives = 260/621 (41%), Gaps = 100/621 (16%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK-ILAIGLSSRKNLCVNSRVLAAEN 126
K+ YC+RT ++ + +H Q P +K I + L SR+NLC+N V +
Sbjct: 208 TKIYYCSRTHSQL------AQFVHEVQK---SPFSKDISVVTLGSRQNLCINEEVRRLGS 258
Query: 127 RDSVDAACRKRTAS------WVRALAAE---NPNIETCEFFENYEKAASAAVLPPGVYTL 177
++ C + + +V L + P C + + V+ V+ +
Sbjct: 259 IQRINDRCMEMQKNKHGERHFVEELGVKRKRGPAKSVCPYNKASALQQMRDVVLGAVHDI 318
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP---KVAGIISKEMQKESVVVFD 234
+ L G++ CPY+ R + A +VV YQ +L + AG+ K V++ D
Sbjct: 319 EQLLKLGRETHSCPYYATRLAIPPAQLVVLPYQMVLHEATRRAAGV----QLKGQVLIID 374
Query: 235 EAHNIDNV--CIEALSVSVRRQTLEGAT--RNLSRINQEIERFKATDAGRLRAE---YNR 287
EAHN+ + CI + +S GA R S++ Q +R+K+ RL+A+ Y +
Sbjct: 375 EAHNLSDTLSCIHSAELS-------GAQLCRAHSQLIQYADRYKS----RLKAKNLMYIK 423
Query: 288 ----LVEGLALRGNLPIADAWLSNPALP-------SDILKEAVPGNIRRAEHFLHVLRRL 336
++EGL + + S P ++ L +A NI + + R
Sbjct: 424 QILFVIEGLVRVLGGKVGQSPQSQATQPGTEMLTINNFLFKAQIDNI----NLFKLQRYF 479
Query: 337 VQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLE--------- 387
+ + R VEK ++ H+ +++ R E L+ + TL+
Sbjct: 480 EKSMISRKLGGFVEKYAGSG--VTLHTHSCNNKENRR--TEGLNRYLQTLQSNQNPGTGQ 535
Query: 388 ITDTDEFLHIQTICD----------FATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSC 437
++D E + + + F L + T G ++ + + + ++
Sbjct: 536 LSDQQESVEAEKVLSASPMMQVEGFFMALTNSNTDGRVVV-----HKQGSLSESSVKFLL 590
Query: 438 HDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHP------VVSRSFKMSLTRDCIC 491
+ ++ V ++V+I GT+ P+ + + L F V S + + I
Sbjct: 591 LNPAVHFAQVLKECRAVIIAGGTMQPVSDFKQELLFSAGVVEERVTEFSCGHVIPPENIL 650
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
P+VL G + F R P + G++L + ++VP G+VCFF SY Y II+
Sbjct: 651 PLVLCSGPSGQELEFTFQNRDTPRMMDETGRILSNICNVVPGGVVCFFPSYDYSRRIISH 710
Query: 552 WNDSGILKEIMQHKLVFIETQDVVETTLALDNY-----RKACDCG--RGAVFFSVARGKV 604
W SG L + K +F E + + L+ + R + DC GA+ FSV GK+
Sbjct: 711 WETSGTLTRLANKKKIFQEPKKANQVEQVLNEFSRCIQRCSADCSGLTGALLFSVVGGKM 770
Query: 605 AEGIDFDRHYGRLVIMFGVPF 625
+EGI+F GR V+M G+P+
Sbjct: 771 SEGINFSDDLGRCVVMVGMPY 791
>gi|206558115|sp|A2QY22.1|CHL1_ASPNC RecName: Full=ATP-dependent RNA helicase chl1; AltName:
Full=Chromosome loss protein 1
gi|134079766|emb|CAK40902.1| unnamed protein product [Aspergillus niger]
Length = 874
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 142/617 (23%), Positives = 248/617 (40%), Gaps = 114/617 (18%)
Query: 66 NPVKLIYCTRTVHEMEKTLAELK-----------LLHNYQTRHLGPAAKILAIGLSSRKN 114
+ VK+ YC+RT ++ + EL+ LL T ++ + L SRKN
Sbjct: 199 DEVKIFYCSRTHSQLTQFAGELRRVKMPWSIPKDLLSTDLTGEEELEERVKHVTLGSRKN 258
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIET---CEFFENYEKAASAAVLP 171
LC+N RV + EN +++ C L + PN+ C F + E
Sbjct: 259 LCINPRVSSLENATAINERC----------LDLQQPNVNPQHRCPFLPSKEDERQVLQFR 308
Query: 172 ----PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV------------------VVYSY 209
V ++DL GK+ G CPY+ +R +V+ + V V Y
Sbjct: 309 DHALSTVKDIEDLGKLGKKIGICPYYASRSVVKDSEVCCLRARSSIDLVPDEWQIVTLPY 368
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQE 269
LL ++ + K V++ DEAHN+ + SV+V TL +LS++
Sbjct: 369 PLLLQRSAREALNSSV-KGHVIIIDEAHNLMDAISNIHSVTV---TLSQLQTSLSQLTIY 424
Query: 270 IERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHF 329
+FK G+ R+ +++
Sbjct: 425 GRKFKTRLKGKNRSYVAQVI---------------------------------------- 444
Query: 330 LHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQ----KTLRFCYERLHSLMLT 385
+L + +LR LE+ EGPV ++ + + G+DQ K R+ E + +
Sbjct: 445 -RLLSSIAAHLRSLLESGKA-PEGPV-LISELMSGKGVDQINPYKLSRYLQESKLARKVD 501
Query: 386 LEITDTDEFLHIQTICDFATLVGTYTRGF--SIIIEPFDERM---PHIPDPVLQLSCHDA 440
+ T + Q V + +GF S++ + R+ D L+ D
Sbjct: 502 GYVEFTRDPSDKQASRSPTVPVLFHIQGFLLSLMNPSAEGRLFYSKEQGDIQLKYMLLDP 561
Query: 441 SLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR----SFKMSLTRDCICPMVLT 496
+ + + + +++++ GT+SP+ Y L + SR S+ + + + L
Sbjct: 562 TNQFRELVEDARAIILAGGTMSPMTDYMNHLFSYVPASRLDTFSYGHVIPPENLIAHTLV 621
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG 556
RG +D R + + G+ + + ++PDG+V FF SY Y+ ++ W
Sbjct: 622 RGVQGSEFDFTYDARDSEKMIMDLGRTIATLCHVIPDGVVAFFPSYDYLGRVLNIWKKPM 681
Query: 557 ILKE-------IMQHKLVFIETQDVVETTLAL-DNYRKACDCGRGAVFFSVARGKVAEGI 608
+ ++ I Q K + E++D+ TT L Y D GRGA+ SV GK++EGI
Sbjct: 682 LGEQGQTVYNLIGQKKPILSESRDMTVTTEELLHTYANTVDSGRGALLLSVVGGKLSEGI 741
Query: 609 DFDRHYGRLVIMFGVPF 625
+F GR V++ G+PF
Sbjct: 742 NFSDKLGRGVLIVGLPF 758
>gi|219110231|ref|XP_002176867.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411402|gb|EEC51330.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]
Length = 791
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 155/677 (22%), Positives = 273/677 (40%), Gaps = 122/677 (18%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL-------------- 53
V V+FP+ Y Q +YM ++ AL + LLE PTGTGKT+ LL
Sbjct: 44 VRVHFPF-RPYKCQETYMEKVLDALLRSENALLESPTGTGKTLCLLCSTLAWQREQSRLL 102
Query: 54 -------SLITSYVLSKPENPVK------LIYCTRTVHEMEKTLAELKLLHNYQTRHLGP 100
+ S + + + P + +IY +RT ++ + + EL+ Y+ +H
Sbjct: 103 QQASELQNTDASLLANSQDAPARAARVPTIIYASRTHSQLSQVVRELRNTR-YRPQH--- 158
Query: 101 AAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFEN 160
A+ L SR +CVN +V C +A+ V ++ C F N
Sbjct: 159 -----AV-LGSRDQMCVNPKV--------KKQGC---SATDVNHDCSKLGKDRKCRFRNN 201
Query: 161 YEKAASAAVLPPGVYT-----LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP 215
+ + A G T ++DL GK CP++ R +V A +++ Y YL D
Sbjct: 202 LDGFTAPANENSGTNTQPVMDMEDLVTMGKSHKVCPFYYTRALVAKAELILVPYNYLFDK 261
Query: 216 KV-AGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIE--- 271
A +S +V++FDEAHN+++ E+ S + + G + + ++
Sbjct: 262 DARATTLSDIPWDNAVLIFDEAHNLESFASESASFDLSNTDISGCIAEVQKAGNYLQAMP 321
Query: 272 ----RFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAE 327
K + +L+A + +L + L GN A+ + D ++ N E
Sbjct: 322 DLGSNLKEENLVKLKAIFLKLEDYLMGLGN---QTAYTGEFMM--DFFQQGGGVNHSNHE 376
Query: 328 HFLHVLRR---LVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
F+ LR+ L+ +RG T+ K FV + R E+L S L
Sbjct: 377 IFIEELRKVNDLLLDMRGTGATKGSPK--LEHFVQCLK----------RVFGEKLESRCL 424
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMP---HIPDPVLQLSCHDAS 441
+ + + + P ++R HI + C +
Sbjct: 425 AKSAS------------------------YRVHVSPKEQRQSGKQHIASRTVSYWCFAPA 460
Query: 442 LAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
LA++ + +S+++TSGTLSP+ Y L + + ++ + I V+ +G
Sbjct: 461 LAMEELASLNVRSIIVTSGTLSPLPSYSMELGLNFPHTLENPHIVSDNQIHVRVIGKGVS 520
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGI--- 557
+++ ++ R D G LV + + P G++ FF SYS M+ I W +
Sbjct: 521 GKELTSSYERRKDGEYYSELGNTLVALSKVTPAGMLVFFPSYSVMETCIERWGGPSLNYN 580
Query: 558 -------LKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR--GAVFFSVARGKVAEGI 608
K ++ K V +E + A+ ++ + + G + V RGK++EGI
Sbjct: 581 IKSPKTPWKRLLSTKSVVVEPKSSANLPEAIADFHRFLGMLKSPGCILMGVCRGKISEGI 640
Query: 609 DFDRHYGRLVIMFGVPF 625
DF R V++ G+PF
Sbjct: 641 DFANEQSRAVVITGLPF 657
>gi|296481054|tpg|DAA23169.1| TPA: regulator of telomere elongation helicase 1 [Bos taurus]
Length = 583
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 144/620 (23%), Positives = 253/620 (40%), Gaps = 126/620 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLS---------- 54
L+ VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LKGVTVDFPFQP-YKCQEEYMSKVLECLQEKVNGILESPTGTGKTLCLLCSTLAWREHLR 64
Query: 55 --------------------LITSYVLSKPENPV--------KLIYCTRTVHEMEKTLAE 86
+ S+ + PE V K+IY +RT ++ + ++E
Sbjct: 65 DAVSARRIAERASGELFPDRTLASWGNAIPEGDVPACYTDIPKIIYASRTHSQLTQVISE 124
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
L R+ ++ +G SR+ LC++ V E+ CR++ AS
Sbjct: 125 L--------RNTSYRPRVCVLG--SREQLCIHPEVKKQESNHMQVHLCRRKVAS------ 168
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 169 ------RSCHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIF 222
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS-------VSVRRQTLEGA 259
Y YLLD K ++ K +VV+FDEAHN++ +C EA S V+ ++
Sbjct: 223 MPYNYLLDAKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDLTPHDVASELDVIDRV 281
Query: 260 TRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA-LRGNLPIADAWLSNPALPSDILKEA 318
+++ Q+ E A R+ N E LA L+ L + + LP D
Sbjct: 282 LEERTKVAQQAELHPEFSADSARSGLNLEPEDLAKLKMILLRLEGAIDAVELPGDNSGVT 341
Query: 319 VPGN------------IRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAG 366
PG+ + L L +L+Q+L GR T AG
Sbjct: 342 KPGSYIFELFAEAQITFQTKGCILDSLDQLIQHLAGR--------------AGLFTNTAG 387
Query: 367 IDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII-------- 418
+ ++L ++ + D+ E D +VG ++ + + I
Sbjct: 388 L---------QKLVDIIQIVFSVDSAE-------GDPGPMVGLASQSYKVHIHLDAGHRR 431
Query: 419 -----EPFDERMPHIPDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLN 472
+ ++ P VL C +++ + + +++++TSGTL+P+ + +
Sbjct: 432 TAQRSDVWNTTAARKPGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTLAPMASFSLEMQ 491
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
V + + I V+ +G D +S+ FD R + GK+L + +VP
Sbjct: 492 IPFPVCLENPHVINQHQIWVGVIPKGPDGAQLSSAFDRRFSDECLSSLGKVLSNISRVVP 551
Query: 533 DGIVCFFVSYSYMDEIIATW 552
G++ FF SY M++ + W
Sbjct: 552 HGLLVFFPSYPVMEKSLEFW 571
>gi|337283773|ref|YP_004623247.1| DNA repair helicase rad3 [Pyrococcus yayanosii CH1]
gi|334899707|gb|AEH23975.1| DNA repair helicase rad3 [Pyrococcus yayanosii CH1]
Length = 641
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 152/626 (24%), Positives = 269/626 (42%), Gaps = 99/626 (15%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
YFPY+++ P Q ++ + A+ + ++E PTG GKTI++L+ I + ++ K+
Sbjct: 4 YFPYESLRPNQEEFIRLVSDAVRKGKNLIVEAPTGFGKTISVLAGILPHAIAM---GYKV 60
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
+Y RT +M++ + ELK +G AK+ + SRK LC++ + S
Sbjct: 61 VYLARTHKQMDRVIEELKA--------IGRKAKVSGVEFRSRKELCLHPYIQTF----SP 108
Query: 131 DAACRKRTASWVRALAAENPNIETCEFFENY-EKAASAAVLPPGVYTL----QDLRAFGK 185
DA ++ L C F+EN+ EK + L T ++ + +
Sbjct: 109 DAYNAMVVCKNLKKLG-------KCPFYENFKEKREGVSELVEFFLTTPGHPSEIVHYCR 161
Query: 186 QQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES---VVVFDEAHNIDNV 242
CPY + R + + A V+V SY Y++ P + + + E ++VFDEAHN+ +
Sbjct: 162 LLELCPYEVTRRVGEKATVIVASYLYMVSPPIREAFLEGLGLEYSDLILVFDEAHNLPDQ 221
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQ-EIERFKATDAGRLRAEYNRLVEGLALRGNLPIA 301
+ ALS + ++LE A + + +IE F L Y L
Sbjct: 222 AVSALSDRLSLRSLERAVKEAQEYGEGDIESFLLILLRGLELLYEE---------RLKNY 272
Query: 302 DAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASI 361
+A+ P P DI + + E ++ R +V+ L +E + +E +
Sbjct: 273 EAY-EVPIRPEDIFRHVI-------EVTGYLGRAIVRMLNDMVEVGDAIREDRIERNLPP 324
Query: 362 TAHAGIDQKTLRFCYERLHSLMLT-LEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
++ G R+ +LT L + +++++LH+ + +G S
Sbjct: 325 RSYIG-----------RVGEFLLTWLSLANSEDYLHLM----------SREKGLS----- 358
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
L++ D S A+ V + S + SGTLSP++ + ++ + +
Sbjct: 359 ------------LEIVALDPSRALDFV-EEVHSAIFMSGTLSPLEAFRDIIGVEAEL-KK 404
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F + R+ +V VST+ + RS PG+ R + + E V + P + F
Sbjct: 405 FPRIVKRENALVLVAR------DVSTRGEERS-PGLYRRLAEYIFEAVRLTPKNVGVFTA 457
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV-VETTLALDNYRKACDCGRGAVFFSV 599
SY +D +I+T I +E+ K VFIE + AL KA G GAV F V
Sbjct: 458 SYEVLDGLISTNIHVKIEEEL--GKKVFIEKKGASSRENDALVAQFKAEAKGNGAVLFGV 515
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPF 625
G+ +EG D+ V++ G+P+
Sbjct: 516 MGGRNSEGQDYSGDEMNGVVLVGIPY 541
>gi|206558225|sp|A5DNW6.2|CHL1_PICGU RecName: Full=ATP-dependent RNA helicase CHL1; AltName:
Full=Chromosome loss protein 1
gi|190348421|gb|EDK40869.2| hypothetical protein PGUG_04967 [Meyerozyma guilliermondii ATCC
6260]
Length = 825
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 141/590 (23%), Positives = 255/590 (43%), Gaps = 94/590 (15%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
PV + + +RT ++ + +L + ++++ A +I + LSSRK LC++ +V + +
Sbjct: 197 PVTIFFSSRTHSQLSQFAHQLSIT-SFESSLGEIAERIKFMPLSSRKQLCIHPKVSSLSS 255
Query: 127 RDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP-------PGVYTLQD 179
+V+ AC + + + + CEF S ++ + +++
Sbjct: 256 VSAVNDAC----------VELQQKSDKRCEFMPRVNNPESDQLVQRFADYSFAVIKDIEE 305
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L G CPY+ +R ++ + ++ YQ LL + + K+S+V+ DEAHN+
Sbjct: 306 LHELGADLKVCPYYASRRNIENSEIIALPYQMLLQQATRKSLGLSI-KDSIVIIDEAHNL 364
Query: 240 DNVCIEALSVSVRRQTLEGATRNLS-RINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+V SVS+ R+ L +L N+ +R + + R +L++ +L
Sbjct: 365 LDVISSINSVSITRKELSSVIASLKLYYNKFTKRLNSGN----RIHLMKLIKLCSLVETY 420
Query: 299 PIADAWLSNPALP-SDIL-KEAVPG------NIRRAEHFL---HVLRRLVQYL-RGRLET 346
I + + N +P SD+L E G NI R E +L + ++ Y+ + R E+
Sbjct: 421 -IKNCEIQNKCVPGSDVLIDELFQGSTGDLLNIHRIEKYLDKSKIAYKIQTYIEQSREES 479
Query: 347 ENVEKEGPVSFVASITAHAGID-QKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFAT 405
+ + P+ F + + ++ K RF +++ I D E ++
Sbjct: 480 DEKQASSPLLFKVTAFLKSLVNPSKEGRFFWDK---------INDDTEIKYL-------- 522
Query: 406 LVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID 465
+++P S + V + + V++ GT+ P++
Sbjct: 523 -----------LLDP--------------------SEMFRDVVESARCVLLCGGTMEPVE 551
Query: 466 LYPRLLNFHPVVSRSFKMSLTRDCICPM----VLTRGSDQLPV-STKFDMRSDPGVARNY 520
Y R L P V T I P VLT S + V + R+DP + R
Sbjct: 552 DYYRYL--FPYVPGEKIKKFTCGHIVPQENIEVLTVSSRKTTVFDFSYHKRNDPSMLREL 609
Query: 521 GKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA 580
L ++ VP+GI+ F SY Y++++I+TW G L +I K VF+E+ D
Sbjct: 610 ALSLQDICERVPNGIIVFAPSYKYLNQLISTWRKDGNLAKISTLKQVFLESSDSTSIESI 669
Query: 581 LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
L +Y A G GA+ FSV GK++EG++F R VIM G+P+ S
Sbjct: 670 LRDYGAAAR-GSGAILFSVVGGKMSEGVNFSDELARAVIMLGLPYPNAFS 718
>gi|160330987|ref|XP_001712201.1| rad3 [Hemiselmis andersenii]
gi|159765648|gb|ABW97876.1| rad3 [Hemiselmis andersenii]
Length = 756
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 125/657 (19%), Positives = 277/657 (42%), Gaps = 54/657 (8%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F +E+V V FP++ I+PEQ M LK+ D K H ++ +P G G ++ + SY
Sbjct: 1 MKFFIENVYVLFPFNIIFPEQIQLMYILKKLFDNKSHGIMGIPPGIGFSMVTICFFISYN 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIG---LS------- 110
S KLIYC R K + + L+ ++T +LG + + +I +S
Sbjct: 61 FSTKLKK-KLIYCLR------KEVDSISLIEQFRT-YLGESNEKFSIKNFEISPQITVPF 112
Query: 111 SRKNLCVNSRVLAAENRDSVDAACRKRTASWV-----RALAAENPNIETCEFFENYEKA- 164
+K LC+ R+ D ++ C+ A V + NI + + + +
Sbjct: 113 GKKTLCIEERLKPLTKIDEIEDFCKSLLAFSVYNEKKKEKIFSKLNINSDSYLNSQNQCF 172
Query: 165 -------ASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKV 217
+ ++TL+ LR FG ++ CPYF +R +V ++V++ + +
Sbjct: 173 FFQNFLKKKKKLDFRKIWTLKILREFGIRKKICPYFFSRDIVLKSDVIIGTLKKFFFSDF 232
Query: 218 AGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATD 277
+++ S ++F++ ++++++ + S+++ L+ + R++ + ++ K+
Sbjct: 233 FFSKNQKNVSLSYLIFEDIYDLESIQLIFSSINLNPIILKDSQRSIFWLKKKFFFHKSKF 292
Query: 278 AGRLRAE----YNRLVEGLA-----LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEH 328
+ +E Y+++ L + NP + +++ +I R H
Sbjct: 293 LKKFSSEDFFFYDQINTNLTENFFNIFSYRNFHQKNFFNPKFFT--IRKKKEKSIGRIFH 350
Query: 329 FLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHA---GIDQKTLRFCYERLHSLMLT 385
F +++++ + +L K F+ + + + +++F L+S +
Sbjct: 351 FFSLIQKITDFFSSKLNENTHLKLSIKEFLQYLLKNIYNLELTLNSIKFLNFFLNSFVTI 410
Query: 386 LEITDTDEFLHIQTICDFATLVG----TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDAS 441
L + + + +F ++G ++ F I + P + +P + C + S
Sbjct: 411 LGYFGYRKINGLTKLIEFFRIIGENAESFNENFKIFFSSSNSDFPFLNEPKINFGCLETS 470
Query: 442 LAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQ 501
K + + F SV++ ++ +L+ P + + L + I P +L +
Sbjct: 471 FLTKSLLENFNSVMVCFPNGLQLNFIFFILDCKPQIFGNLGNFLEKKNINPFIL--NCED 528
Query: 502 LPVST--KFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILK 559
LP+ K +A+ ++ + + +G +C F S ++++ + W LK
Sbjct: 529 LPMINLDKKKKEQQKNLAKKSFYIMNKFIDENLEGTICLFPSLNFINVFLEEWKTEKYLK 588
Query: 560 EIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGR 616
+ +F+E ++ + L ++NY+ CD G + F + G + I+F HY R
Sbjct: 589 NFIGKGEIFLENINLEDNYLLIENYKICCDLGLKTLLFGINGGTTTK-INFKSHYCR 644
>gi|358054721|dbj|GAA99647.1| hypothetical protein E5Q_06350 [Mixia osmundae IAM 14324]
Length = 830
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 135/586 (23%), Positives = 252/586 (43%), Gaps = 87/586 (14%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA--E 125
K+ Y +RT ++ + + E++ T + P L SR +LC+N ++ A
Sbjct: 199 TKVYYASRTHSQLAQFVQEIRKTSFADTTRIVP--------LGSRASLCINDKLKKACGG 250
Query: 126 NRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT----LQDLR 181
N ++++ C + AE + CEF + E+ + L+DL
Sbjct: 251 NTETLNERC-------LELQKAEKGS--RCEFLPSQEEEDKMIGFRDRILATTLDLEDLE 301
Query: 182 AFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
G+ CPY+ +R ++ A+VV Y LL + + K +V+ DEAHN+ +
Sbjct: 302 DLGRATHVCPYYGSRRAIRQAHVVTLPYNMLLQHAARESLGISL-KGHIVIIDEAHNLID 360
Query: 242 VCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAG-------RLRAEYNRLVEGLAL 294
+ +VS+ ++ A LS + ++RFK G +L A + RL E +
Sbjct: 361 TVLSINTVSIASTSISNA---LSGVQLYLQRFKTRLKGSNTVYLKQLLAIFRRL-EAYCI 416
Query: 295 RGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGP 354
+ +A + L E + G+I + + L +L Y++ T + +
Sbjct: 417 TWSESRQNAKAIEELMLPKALMEDLQGSIDQVD-----LHKLAAYMK----TSKIAHK-- 465
Query: 355 VSFVASITA--HAGIDQKT------LRFCYERLHSLMLTLEITDTDEFLHIQTICDFATL 406
+S A++ A A QK L ++ S +L L D + + D + +
Sbjct: 466 ISGYANMQAEKQARAQQKPNKHKVLLVNAVYQIQSFLLALTNPSRDGRIIVSRAADSSNV 525
Query: 407 VGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDL 466
Y +++ P D + + + D +SV++ GT+SP+
Sbjct: 526 SLRY-----LLLNPAD--------------------SFRSIVDDARSVILAGGTMSPLSD 560
Query: 467 YPRLLNFHPVVSRSFKMSLT------RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNY 520
+ L F + + M+L+ R I V+ G + ++ R + + ++
Sbjct: 561 FDNQL-FGHLAADQKPMALSCGHVVPRQNISVSVIRSGPTKQDFRFTYENRDNLAMLQDL 619
Query: 521 GKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA 580
G + + + P GIVCF SY+++D++ A W SG+++ I ++KL+F+E + E
Sbjct: 620 GSAIATLARVCPAGIVCFVPSYAFLDKLQAVWKSSGMIERIRKNKLIFMEPKTAGEVDAV 679
Query: 581 LDNYRKACDCG-RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L Y A G +GA+ F+V K++EGI+F R VI+ G+P+
Sbjct: 680 LKGYSTANSSGNKGAILFAVVGAKLSEGINFADDMARAVIIVGIPY 725
>gi|68472519|ref|XP_719578.1| hypothetical protein CaO19.9551 [Candida albicans SC5314]
gi|68472770|ref|XP_719450.1| hypothetical protein CaO19.2000 [Candida albicans SC5314]
gi|74586763|sp|Q5AD67.1|CHL1_CANAL RecName: Full=ATP-dependent RNA helicase CHL1; AltName:
Full=Chromosome loss protein 1
gi|46441268|gb|EAL00566.1| hypothetical protein CaO19.2000 [Candida albicans SC5314]
gi|46441401|gb|EAL00698.1| hypothetical protein CaO19.9551 [Candida albicans SC5314]
Length = 842
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/583 (23%), Positives = 252/583 (43%), Gaps = 73/583 (12%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E P+K+ + +RT ++ + ++L+L N+Q + I L SRK LC+N +V +
Sbjct: 198 ECPIKIFFSSRTHSQLNQFSSQLRLT-NFQASFEDLEERTKYIPLGSRKQLCINEKVRSK 256
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFF-ENYEKAAS----AAVLPPGVYTLQD 179
N SV+ AC L E C++ +NY ++ A + + ++D
Sbjct: 257 GNDQSVNDACLD--------LQRE---TNGCQYLPKNYMMSSVTKEFADLSLAKIRDIED 305
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L G + CPY+ R ++ ++ YQ + I++ +++ +++ EAHNI
Sbjct: 306 LNELGIELNICPYYSVRKGIEMTEIISLPYQMIFQDTTRKILNLDIKDSIIIID-EAHNI 364
Query: 240 DNVCIEALSVSVRRQTLEGATRNLS-RINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+V S+ + L ++L +N+ ++R + + L + ++ + L N
Sbjct: 365 IDVITSMYSIKITSDQLNKVIKSLKIYLNKFLKRLNSGNRINL-MKLIKICQILLKFLNT 423
Query: 299 PIADAWLSNPALPSDILKEAVPG--NIRRAEHFL---HVLRRLVQYL-RGRLETENVEKE 352
+ DI K++ NI + + FL + ++ Y+ + +ET+N EK+
Sbjct: 424 NSEKVKSGDEVQIQDIFKDSTGDLVNIHKLDQFLTKSKIAYKIESYIEKTEMETDNGEKK 483
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
G ++ ++ + L + L +L ++ +F + GT +
Sbjct: 484 GRITNSGGSSSSSSSSNPLLFTIIKFLRTLT---NLSKEGKFF-------WDNENGTISL 533
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
+ ++ D S K + D+ + V++ GT+ P+ Y L
Sbjct: 534 NYMLL---------------------DPSAVFKEIVDQAKCVLLCGGTMEPMSDYMDYL- 571
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQL-PVS----TKFDM----RSDPGVARNYGKL 523
F V + C V+ + + Q+ P+S T F+ R+D G+
Sbjct: 572 FPSVPTNKINT-----FACGHVIPKENLQVFPISQWNDTNFEFSYQKRNDSKQLMALGEF 626
Query: 524 LVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDN 583
L+E+ VP G+V FF SY Y+D+++ W D+ IL I K +F E +D L+
Sbjct: 627 LIEITKRVPYGVVIFFPSYKYLDQVLQFWRDTKILTSIESEKTIFREPKDPSNVEKVLNE 686
Query: 584 YRKACDCGR-GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y R GA+ FSV GK++EGI+F R VIM G+P+
Sbjct: 687 YGYLIQTERKGAILFSVVGGKMSEGINFSDDLARAVIMVGLPY 729
>gi|119493390|ref|XP_001263885.1| DEAD_2 domain protein [Neosartorya fischeri NRRL 181]
gi|206558089|sp|A1D8E4.1|CHL1_NEOFI RecName: Full=ATP-dependent RNA helicase chl1; AltName:
Full=Chromosome loss protein 1
gi|119412045|gb|EAW21988.1| DEAD_2 domain protein [Neosartorya fischeri NRRL 181]
Length = 861
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 140/602 (23%), Positives = 245/602 (40%), Gaps = 102/602 (16%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKL----------LHNYQTRHLGPAAKILAIGLSSRKN 114
++ VK+ YC+RT ++ + +EL+ L ++ + L SRKN
Sbjct: 204 DDDVKIFYCSRTHSQLSQFSSELRRVKMPSSMPAELSTSDANTDDAEERVKHLTLGSRKN 263
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGV 174
LC+N +V++ N +++ C + V AAE + C + + E VL
Sbjct: 264 LCINPKVMSLGNATAINERCLELQQPGV---AAE----KRCPYLPSKED--EGQVLQFRD 314
Query: 175 YTL------QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
+TL +D+ GK+ G CPY+ +R +++ + +V Y LL + + K
Sbjct: 315 HTLATIKDIEDMGKLGKRMGICPYYASRSVLKHSEIVTLPYPLLLQRSARDALDLSI-KN 373
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---AEY 285
VV+ DEAHN+ + SV++ L+ A LS++ + KA G+ R A+
Sbjct: 374 HVVIIDEAHNLMDAICNIHSVTITLSQLQTA---LSQLTTYARKHKARLKGKNRSYIAQI 430
Query: 286 NRLVEGLA--LRG----NLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRL--- 336
RL+ +A LR NLP A + + + + P + R + R++
Sbjct: 431 IRLISSIADHLRSTIGENLPAEGAVDPSDLMAGKGVDQINPYKLSRYLQESKLARKVDGY 490
Query: 337 VQYLRGRLETENVEKEGPVSF-VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFL 395
V++ + + + + + PV F V S RF Y + H
Sbjct: 491 VEFSKDKNQQSDDKPSSPVLFLVQSFLLPLMNPSAEGRFFYLKFHD-------------- 536
Query: 396 HIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVV 455
D L+ D + + + + ++V+
Sbjct: 537 ----------------------------------DIQLKYMLLDPTNHFREIVEDARAVI 562
Query: 456 ITSGTLSPIDLYPRLLNFHPVVSR----SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+ GT+SP+ Y L + SR S+ + + + L G +D R
Sbjct: 563 LAGGTMSPMSDYRNHLFSYIAPSRLDTFSYGHVIPPENLIAHTLVNGVLGSEFDFTYDSR 622
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW-------NDSGILKEIMQH 564
+ + G+ + + +PDG+V FF SY Y+ I+A W IL I +
Sbjct: 623 DSEKMILDLGRTVAMLCQAIPDGVVAFFPSYDYLSRILAIWRKPLVGEKGQTILSLIERK 682
Query: 565 KLVFIETQDV-VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
K + E +D+ +T L Y + D G+GA+ SV GK++EGI+F GR V++ G+
Sbjct: 683 KSILYEGRDMGAKTEDLLQEYTRTIDSGQGALLLSVVGGKLSEGINFSDKLGRGVLIIGL 742
Query: 624 PF 625
PF
Sbjct: 743 PF 744
>gi|357159919|ref|XP_003578599.1| PREDICTED: uncharacterized protein LOC100829852 [Brachypodium
distachyon]
Length = 1225
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 168/704 (23%), Positives = 277/704 (39%), Gaps = 169/704 (24%)
Query: 12 FPYDNIYPEQYSYMLELKRALD-----AKGHCLLEMPTGTGKTIALLSLITSYV------ 60
FPY Y Q ++M + LD + H LLE PTGTGK+++LL ++
Sbjct: 39 FPY-KPYGTQLAFMGRVIATLDRARRQGRSHALLESPTGTGKSLSLLCSALAWQRHYPLR 97
Query: 61 ----------------------------------LSKPENPVKLIYCTRTVHEMEKTLAE 86
+K +N + Y TRT ++ + + E
Sbjct: 98 APPAPPAADPFLHGGGFVPDDTQQQQATPGVPEKAAKKKNAPTIYYATRTHSQITQVVRE 157
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
L+ +Y+ R +A+ L+SRK+ CVN V ++N +D C+ L
Sbjct: 158 LRKT-SYRVR--------MAV-LASRKHYCVNKNVCMSDN---IDEQCK---------LL 195
Query: 147 AENPNIETCEFFENYEKAASAAVLPPG----VYTLQDLRAFGKQQGWCPYFLARHMVQFA 202
++ ++ C F+N +K + L G V+ ++DL G+Q CPYF A+ M + A
Sbjct: 196 LDD-KVQGCPEFKNAQKLSRHPSLQKGGCYEVHDIEDLLRVGRQVKGCPYFAAQTMAETA 254
Query: 203 NVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQ---TLEGA 259
+V Y YL+ P V + ++ S+V+ DEAHNI+++ +A SV V + TL G
Sbjct: 255 QLVFCPYNYLISPIVRRAMDIDISG-SIVILDEAHNIEDIARDAGSVDVDEESLTTLAGE 313
Query: 260 TRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAV 319
NL+ N+ + ++ + ++EGL W+++
Sbjct: 314 LANLA-TNEAV--------AKIYQPLHEVIEGLI---------NWITDQV---------- 345
Query: 320 PGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERL 379
GN+R E F H + G EN KE AGI E
Sbjct: 346 -GNLRDNE-FEHP----ASFWTG----ENAMKE---------LQKAGITPAYFPILQECA 386
Query: 380 HSLMLTLEITDTD-EFLHIQTICDFATLVGTYTRGFS----------IIIEPFDERMPHI 428
+ T++D E+L + + +L + + F+ + + F +R
Sbjct: 387 TKAVKAASDTESDGEYLTGRGVMTLDSLFSSLSHFFAGNGCHFYDYQLAFQHFVQREGSS 446
Query: 429 ----PDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS 484
V+ L C ++ + + D SV++TSGTLSP+ + L
Sbjct: 447 SVIGSRSVMSLWCLSPAVVFQGISDLTLSVILTSGTLSPMGSFASELGVQFDACMEAPHV 506
Query: 485 LTRDC-ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYS 543
+ D + V++ G + P++ + G + E+ IVP G + FF SY
Sbjct: 507 IDADSQVFASVISSGPTKYPLNASYKTADVYSFQDELGASIEEICRIVPGGALVFFPSYK 566
Query: 544 YMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA-LDNYRKAC------DCGR---- 592
+D++ W +G + +K VF+E + E L Y A GR
Sbjct: 567 LLDKMKVRWAQTGQWARLHANKPVFVEPRGSTEELEPILKGYYDAILGKAPLKKGRGGAK 626
Query: 593 ------------------GAVFFSVARGKVAEGIDFDRHYGRLV 618
GA F +V RGKV+EGIDF R+V
Sbjct: 627 QIVKNRVRKNSSQESAKGGAAFLAVCRGKVSEGIDFSDDNARVV 670
>gi|238881932|gb|EEQ45570.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 841
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 135/583 (23%), Positives = 250/583 (42%), Gaps = 74/583 (12%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E P+K+ + +RT ++ + ++L+L N+Q + I L SRK LC+N +V +
Sbjct: 198 ECPIKIFFSSRTHSQLNQFSSQLRLT-NFQASFEDLEERTKYIPLGSRKQLCINEKVRSK 256
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFF-ENYEKAAS----AAVLPPGVYTLQD 179
EN SV+ AC L E C++ +NY ++ A + + ++D
Sbjct: 257 ENDQSVNDACLD--------LQRE---TNGCQYLPKNYMMSSVTKEFADLSLAKIRDIED 305
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L G + CPY+ R ++ ++ YQ + I++ +++ +++ DEAHNI
Sbjct: 306 LNELGIELNICPYYSVRKGIEMTEIISLPYQMIFQDTTRKILNLDIKDSIIII-DEAHNI 364
Query: 240 DNVCIEALSVSVRRQTLEGATRNLS-RINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+V S+ + L ++L +N+ ++R + + L + ++ + L N
Sbjct: 365 IDVITSMYSIKITSDQLNKVIKSLKIYLNKFLKRLNSGNRINL-MKLIKICQILLKFLNT 423
Query: 299 PIADAWLSNPALPSDILKEAVPG--NIRRAEHFL---HVLRRLVQYL-RGRLETENVEKE 352
+ DI K++ NI + + FL + ++ Y+ + +ET+ EK+
Sbjct: 424 NSEKVKSGDEVQIQDIFKDSTGDLVNIHKLDQFLTKSKIAHKIESYIEKTEMETDTGEKK 483
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
G ++ + + + + + L ++ +F + GT +
Sbjct: 484 GRITNSGGSSRSSSSNP----LLFTIIKFLRTLTNLSKEGKFF-------WDNENGTISL 532
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
+ ++ DP S K + D+ + V++ GT+ P+ Y L
Sbjct: 533 NYMLL------------DP---------SAVFKEIVDQAKCVLLCGGTMEPMSDYMDYL- 570
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQL-PVST--------KFDMRSDPGVARNYGKL 523
F V + C V+ + + Q+ P+S F R+D G+
Sbjct: 571 FPSVPTNKINT-----FACGHVIPKENLQVFPISQWNDTNFEFSFQKRNDSKQLMALGEF 625
Query: 524 LVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDN 583
L+E+ VP G+V FF SY Y+D+++ W D+ IL I K +F E +D L+
Sbjct: 626 LIEITKRVPYGVVIFFPSYKYLDQVLQFWRDTKILTSIESEKTIFREPKDPSNVEKVLNE 685
Query: 584 YRKACDCGR-GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y R GA+ FSV GK++EGI+F R VIM G+P+
Sbjct: 686 YGYLIQTERKGAILFSVVGGKMSEGINFSDDLARAVIMVGLPY 728
>gi|46126959|ref|XP_388033.1| hypothetical protein FG07857.1 [Gibberella zeae PH-1]
Length = 863
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 139/596 (23%), Positives = 248/596 (41%), Gaps = 91/596 (15%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLH---------NYQTRHLGPAAKILAIGLSSRKNL 115
E P+K+ Y +RT ++ + + EL+ + Q A K+L LSSR+ L
Sbjct: 203 EEPIKIYYTSRTHSQLSQFITELRRPSFPPSLPTSLSKQEETKTEAVKLLP--LSSRQRL 260
Query: 116 CVNSRVLAAENRDSVDAACRK----RTASWVRALAAENPNIETCEFFENYEKAASAAVLP 171
C+N V + +++ C + ++ + E+ +T +F + ++ A LP
Sbjct: 261 CINPSVSRLGSVQAINDRCSELQQPKSGQKCPFVPKEDLLSQTHQF-----RDSALATLP 315
Query: 172 PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVV 231
++DL GK CPY+ +R + A ++ Y LL + +++ S+V
Sbjct: 316 ----DIEDLHQLGKSLAVCPYYASRTALPGAEIITLPYPLLLQKSARDALGVKLEG-SIV 370
Query: 232 VFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS----RINQEIERFKATDAGRLRAEYNR 287
+ DEAHNI + + ++ L L R ++++ + GR+ R
Sbjct: 371 IVDEAHNIMDAVANVHAAEIKLSDLRRGRGMLGVYVKRFGKKLKGVNRVNVGRV----AR 426
Query: 288 LVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHV-LRRLVQYLRGRLET 346
+++GL+ W+ P ++ R++ + + L+QY++
Sbjct: 427 VIDGLS---------EWMDGALKFKQEHGIVDPNDLTRSKGIDQINMFELIQYIQDSKLA 477
Query: 347 ENVEKEGPVSFVASITAH-AGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFAT 405
+E S+++ + + AG KT R LHSL+ FL
Sbjct: 478 FKIE-----SYISHVESEDAGT--KTPRSSTPVLHSLV---------SFL--------IA 513
Query: 406 LVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID 465
L + G F +++ PD L + A + ++V++ GT+SP D
Sbjct: 514 LTNLSSEG-----RIFYQKIKGTPDIQLSYLLLSPTHAFSSIASSARAVILAGGTMSPFD 568
Query: 466 -----LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP-VSTKFDMRSDPGVARN 519
L+P L V + S + + +C L P F R DP +
Sbjct: 569 DYKDHLFPSL-EPEKVTTLSCGHVIPPENLCVWTLASSRPGAPPFEFSFQKRGDPEMITQ 627
Query: 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS------GILKEIMQHKLVFIETQD 573
G ++ + S+VPDG+V FF SY Y+DE++A W S + + K +F ET+
Sbjct: 628 LGLAILNLCSLVPDGVVIFFPSYGYLDEVVAVWQKSQGASTQSVWDRLGTRKALFKETRG 687
Query: 574 VVETTLALDNYRKACDC----GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ L Y A G+GA+ SV GK++EGI+F GR V++ G+P+
Sbjct: 688 ASSEEV-LQEYSDAIQGEKSNGKGALLLSVVGGKMSEGINFSDRLGRCVLVIGLPY 742
>gi|290991586|ref|XP_002678416.1| DEAD/DEAH box helicase [Naegleria gruberi]
gi|284092028|gb|EFC45672.1| DEAD/DEAH box helicase [Naegleria gruberi]
Length = 902
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 138/585 (23%), Positives = 247/585 (42%), Gaps = 66/585 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IYC+RT ++ + + EL R + K+ ++SR+ LC N VL
Sbjct: 241 KIIYCSRTHSQLNQFVQEL--------RKTEFSKKVRVSNIASRQVLCNNEDVLYR---- 288
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP--------GVYTLQDL 180
+ + + +L A N E C++ + +KA S P V+ ++DL
Sbjct: 289 ------KTKNGNIQNSLNAIN---EKCQYLRD-KKACSYDNDPSLFKDHMTVKVHDIEDL 338
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
GK+ C YF R + + ++ Y L+ + + K+ VV+ DEAHN+
Sbjct: 339 LDLGKRLKICSYFGTRKALPISELICMPYNSLIHEQTRKSLGISTLKDCVVIIDEAHNLI 398
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
N + SV + L L N +FK + + NRL L + N+
Sbjct: 399 NAIHQMHSVELDITQLYLVNETL---NSYYTKFKNRLSSTNQTNINRL---LTIINNMIT 452
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+ P+ + I E N F+ + LV +L+ N+ +A
Sbjct: 453 YLNTVKKPSTLNIIADEGTGSN--DIGGFIVSITDLV--FETKLDNINLFD------IAE 502
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY-TRGFSIIIE 419
+ + +K L ER S T+ I + ++ T + S II
Sbjct: 503 FIEKSDLTKK-LNMFMERQDSNNQTVTIHNNKTVKRNNYSANYVQYNATKPSIDVSKIIT 561
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID-----LYPRLLNFH 474
P + + ++ + S+ + + +SV++T GT+ PI ++P+ +
Sbjct: 562 PATSNIA--VNNFIKFLLLNPSVYFQSILKEARSVILTGGTMEPIQQLIQQVFPKTESSK 619
Query: 475 PVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS-DPGVARNYGKLLVEMVSIVPD 533
+ + K + ++ P+ L++G D + + F R + + ++ GK++V + +IVPD
Sbjct: 620 IHIYQCDKHIVPQNHFLPIALSKGVDDIVLDFTFKNRQKNDALTKSLGKMIVNLCNIVPD 679
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDN----YRKACD 589
G+V FF SY Y + W ++GI+ +I + K E E +L+ Y+K D
Sbjct: 680 GVVLFFPSYQYEKTVFEYWKNNGIIGQIEKKKKFLREASTNEEPNSSLEKILQEYKKIID 739
Query: 590 CG------RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
G+V V GK++EGI+F YGRL+I+ G+P+ T
Sbjct: 740 HNFGNSRYNGSVLSCVVGGKLSEGINFSDGYGRLIIVVGMPYPNT 784
>gi|67470878|ref|XP_651401.1| DNA repair helicase [Entamoeba histolytica HM-1:IMSS]
gi|56468131|gb|EAL46015.1| DNA repair helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710566|gb|EMD49619.1| regulator of telomere elongation helicase rtel1, putative
[Entamoeba histolytica KU27]
Length = 1033
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 156/652 (23%), Positives = 278/652 (42%), Gaps = 105/652 (16%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLI 71
FPY P Q M +++A+ H L+E PTGTGKT+ LL L+ P+ ++++
Sbjct: 86 FPYQPYQP-QIEMMNSIQQAVKEGKHLLMESPTGTGKTLVLLH----STLTFPD--MRVV 138
Query: 72 YCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVD 131
Y +RT +++ + + E K + N I I L+SR C+ + + ++++
Sbjct: 139 YASRTHNQLAQVVNETKKIGN-----------IKGIVLASRDLYCIYNPIKTCDDKNY-- 185
Query: 132 AACRKRTASWVRA---LAAENPNIETCEF--FENYEKAASAAVLP-PGVYT--------L 177
W A L + +I C + F + K V+ VY
Sbjct: 186 ---------WCTAKPNLLLKLKHINPCPYRPFGDDGKILPHVVMACQAVYKELNGIIIPQ 236
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKV---AGII----SKEMQKESV 230
++L ++ CPY+ AR + +++ Y ++ + + I + Q+E V
Sbjct: 237 EELVKVCQKHNLCPYYYARWATVRSKLILCPYNFVTSVSIRHSSDIFLIDQNSAHQREFV 296
Query: 231 VVFDEAHNIDNVCIEALSV----SVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYN 286
+V DEAHN+++ +++L+ S+ QT+E + RI Q E L E
Sbjct: 297 LVMDEAHNVEDAFMDSLTFNFTESLLNQTIETIQFHKKRIKQTPENLLTIS---LLTELI 353
Query: 287 RLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLE- 345
VE ++ W+ N +LP + + G + + FL + R R LE
Sbjct: 354 STVESFSI---------WMKNRSLPYKDSEHYLYG-VFEDQAFLPFVERSPSSSR-LLEA 402
Query: 346 -TENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFA 404
+E ++ + + T + + F + + ++ +++ T T+ F
Sbjct: 403 ISEYIKVVDNLDDLDIFTREPHVIRYINSFTTQYIEMILFYIQVFRTP------TLTKFF 456
Query: 405 TLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI 464
+V T G ++ F P +P +LQ+ +SV+ SGTLSP+
Sbjct: 457 KIVITDYNGLREML--FRCLSPSLPMSLLQIVV--------------RSVIFASGTLSPM 500
Query: 465 DLYPRLLNFHPVVSRSFKMS-----LTRDCICPMVLTRG----SDQLPVSTKFDMRS--D 513
+ L+ V + F +S L+ + + P G S L S F ++ D
Sbjct: 501 KAMAQELDIKEHVYKDFIISPGYRMLSTEHVVPPSRVFGRIIISSSLGKSFIFTKKTSQD 560
Query: 514 PGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD 573
+ G + ++S P G + FF SY+ ++ I+ W GI ++ + K +FIE++D
Sbjct: 561 NEMIEQAGDTMFRVLSKSPGGALVFFSSYNMLNRIVELWKQHGIYTQLNKLKAIFIESKD 620
Query: 574 VVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
E Y+ +GAVF V RGK++EGIDF RLVI+ G+P+
Sbjct: 621 KSEFKKDFKEYQ--IQSKKGAVFLGVFRGKLSEGIDFGDDMARLVIVVGIPY 670
>gi|290987559|ref|XP_002676490.1| predicted protein [Naegleria gruberi]
gi|284090092|gb|EFC43746.1| predicted protein [Naegleria gruberi]
Length = 640
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 135/584 (23%), Positives = 251/584 (42%), Gaps = 92/584 (15%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+I+ +RT ++ + ELK +I+ +G SR+ C+N V++ +
Sbjct: 11 KIIFTSRTHSQLTHAIKELK--------KSAYTPEIVVMG--SREQSCINPDVISLKGFQ 60
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVL-----PPGVYTLQDLRAF 183
+ + S VR+ C+++ N+ + L + ++DL
Sbjct: 61 QIS-----KCTSLVRSGG--------CKYYTNFTSLKKSGELFTHEKEDEIEDIEDLLEK 107
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G ++ +CP+F +R + A ++ Y YL+DP + ++ ++ S+++FDEAHN+ +C
Sbjct: 108 GLKRCFCPFFYSREKQKVAEIIFMPYNYLIDPLLRKKVNVDISN-SIIIFDEAHNVQKLC 166
Query: 244 IEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADA 303
EA S + +T N+S+ EIE+ RAE ++L
Sbjct: 167 AEASS-------FDFSTINISKAIAEIEK--------CRAEMDKLT-------------- 197
Query: 304 WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASIT- 362
PSDI K R++ F V L+ L ++ + +EG S SI
Sbjct: 198 -----IDPSDIQKSTE----LRSDCF-DVSSALLD-LDIHIDEMEIPEEGSTSTGDSIYE 246
Query: 363 --AHAGIDQKTLRFCYERLHSLMLTLEITDTD----EFLH--IQTICDFATLVGTYTRGF 414
++A I T E++ S++ L+ E + ++ + + A + +
Sbjct: 247 VFSYASIHPSTWETFNEKIRSIITFLQNKKQSCSGLERVKEAVERVFNEANCEEVFKNFY 306
Query: 415 SIIIEPFDERMPHI---PDPVLQLSCHDASLAVKPVFDRFQ-SVVITSGTLSPIDLYPRL 470
+ I + ++ P L C + L+++ + S ++TSGTLSP++ +
Sbjct: 307 KVYIY-YSKKQPGKDFRKSKTLSFWCFNPGLSMQNLAKEGPLSFILTSGTLSPMESFAYE 365
Query: 471 LNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSI 530
L + + R+ IC M G +++ F R+ R G L+ + +
Sbjct: 366 LGLSFPIRLENPHVVNREQICVMAAQCGPGGTKLNSSFTNRASEPYLREVGTTLLNLSKV 425
Query: 531 VPDGIVCFFVSYSYMDEIIATWNDSG-----ILKEIMQHKLVFIETQDVVETTLALDNYR 585
VPDG++ FF SY+ MD+ I W S + Q+K + E ++ + + Y
Sbjct: 426 VPDGLLVFFPSYTLMDQCIEIWKKSNGGAKSTWDSVTQNKTIITEPKESSKLNQVIREYE 485
Query: 586 KACDCGR----GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + GA FF+V RG+V+EG+DF GR ++ G+PF
Sbjct: 486 DSIKNRKGNTTGACFFAVCRGRVSEGLDFINRNGRCCMIVGLPF 529
>gi|452822429|gb|EME29448.1| DNA excision repair protein ERCC-2 [Galdieria sulphuraria]
Length = 788
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 146/581 (25%), Positives = 248/581 (42%), Gaps = 78/581 (13%)
Query: 69 KLIYCTRTVHEMEKTLAELK-LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
++ YC+RT ++ + E+K + N Q P +L LSSRKNLC+N +V + N
Sbjct: 171 RIYYCSRTHSQLLQFQEEVKRTIANMQWSEKVPRPSVLI--LSSRKNLCINEKVSSLSNA 228
Query: 128 DSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQ 187
+ ++ C + T+ E + C ++ + L + +++L GK++
Sbjct: 229 NLINERCMELTS-------KEPGSPGCCPYYHLEGQRILRDHLSSEIVDIEELVNLGKER 281
Query: 188 GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEAL 247
CPY+ + ++ + ++ YQ LL + + +V+FDEAH++ ++AL
Sbjct: 282 RACPYYGMKRAIKSSQFILLPYQSLLHKPTRESLRLPLHSNCIVIFDEAHHV----VDAL 337
Query: 248 SVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSN 307
+ + GA N +I + L+ + + LS+
Sbjct: 338 N------DMYGAETNTQQIQSCL---------------------FGLKRYIDCYETRLSS 370
Query: 308 PALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF-VASITAHAG 366
N+ F L LVQ+ L+ ++ E F V G
Sbjct: 371 L-------------NLFMLRQFHSFLESLVQFSSLHLKIPPIDGETQNVFTVEDFVTRLG 417
Query: 367 IDQKTLRFCYERLHSLMLTLEI------------TDTDEFLHIQTICDFA-TLVGTYTRG 413
ID + E L S L L++ TD I + F TL Y++
Sbjct: 418 IDNLNIFKLNEFLESKCLHLKLIGLLKSRILSDSNGTDPCQGIHAVFHFVQTLKQPYSK- 476
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLN 472
S II F + I L H A+ + + +SVV GTL P+ D+ RLL
Sbjct: 477 -SRIIVKFRK---DIGCTFKMLVLHAAN-NLTEIISLVRSVVFVGGTLEPLRDIKLRLLG 531
Query: 473 FHP---VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
+V SF + I P++++RG ++P+ + R + G++L+ +
Sbjct: 532 TFEDSHIVHCSFDHVIPDSHILPIIVSRGPTRVPLEFTYATRESEILIHELGRMLLNICR 591
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
+VP G+V FF SYSY + I K +++ K +F E Q+ +E LDNY+KA
Sbjct: 592 VVPGGVVVFFSSYSYCSYALNYLQQKDIWKLLLRQKAIFKEPQESLELNNVLDNYKKAVY 651
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
+G + F+V GK++EGI+F GR +I+ G+PF LS
Sbjct: 652 EQQGGILFAVIGGKLSEGINFQDDLGRCIIVVGMPFPNHLS 692
>gi|146414083|ref|XP_001483012.1| hypothetical protein PGUG_04967 [Meyerozyma guilliermondii ATCC
6260]
Length = 825
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 142/593 (23%), Positives = 250/593 (42%), Gaps = 100/593 (16%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
PV + + +RT ++ + +L + +++ A +I + LSSRK LC++ +V + +
Sbjct: 197 PVTIFFSSRTHSQLSQFAHQLSITL-FESSLGEIAERIKFMPLSSRKQLCIHPKVSSLSS 255
Query: 127 RDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP-------PGVYTLQD 179
+V+ AC + + + + CEF S ++ + +++
Sbjct: 256 VSAVNDAC----------VELQQKSDKRCEFMPRVNNPESDQLVQRFADYSFAVIKDIEE 305
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L G CPY+ +R ++ + ++ YQ LL + + K+S+V+ DEAHN+
Sbjct: 306 LHELGADLKVCPYYASRRNIENSEIIALPYQMLLQQATRKSLGLSI-KDSIVIIDEAHNL 364
Query: 240 DNVCIEALSVSVRRQTLEGATRNLS-RINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+V SVS+ R+ L +L N+ +R + + R +L++ L L
Sbjct: 365 LDVISSINSVSITRKELSSVIASLKLYYNKFTKRLNSGN----RIHLMKLIK-LCLLVET 419
Query: 299 PIADAWLSNPALP-SDIL-KEAVPG------NIRRAEHFL---HVLRRLVQYL-RGRLET 346
I + + N +P SD+L E G NI R E +L + ++ Y+ + R E+
Sbjct: 420 YIKNCEIQNKCVPGSDVLIDELFQGSTGDLLNIHRIEKYLDKSKIAYKIQTYIEQSREES 479
Query: 347 ENVEKEGPVSFVASITAHAGID-QKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFAT 405
+ + P+ F + + ++ K RF +++++
Sbjct: 480 DEKQASSPLLFKVTAFLKSLVNPSKEGRFFWDKIND------------------------ 515
Query: 406 LVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID 465
D ++ D S + V + + V++ GT+ P++
Sbjct: 516 ------------------------DTEIKYLLLDPSEMFRDVVESARCVLLCGGTMEPVE 551
Query: 466 LYPRLLNFHPVVSRSFKMSLTRDCICPM----VLTRGSDQLPVSTKFDM----RSDPGVA 517
Y R L P V T I P VLT L +T FD R+DP +
Sbjct: 552 DYYRYL--FPYVPGEKIKKFTCGHIVPQENIEVLTVS---LRKTTVFDFLYHKRNDPSML 606
Query: 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVET 577
R L ++ VP+GI+ F SY Y++++I TW G L +I K VF+E D
Sbjct: 607 RELALSLQDICERVPNGIIVFAPSYKYLNQLILTWRKDGNLAKISTLKQVFLELSDSTSI 666
Query: 578 TLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
L +Y A G GA+ FSV GK++EG++F R VIM G+P+ S
Sbjct: 667 ESILRDYGAAAR-GSGAILFSVVGGKMSEGVNFSDELARAVIMLGLPYPNAFS 718
>gi|407037674|gb|EKE38739.1| DNA repair helicase, putative [Entamoeba nuttalli P19]
Length = 1034
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 155/667 (23%), Positives = 281/667 (42%), Gaps = 134/667 (20%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLI 71
FPY Y Q M +++A+ H L+E PTGTGKT+ LL L+ P+ ++++
Sbjct: 86 FPYQPPYQPQIEMMNSIQQAVKEGKHLLMESPTGTGKTLVLLH----STLTFPD--MRVV 139
Query: 72 YCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVD 131
Y +RT +++ + + E K + N I I L+SR C+ + + ++++
Sbjct: 140 YASRTHNQLAQVVNETKKIGN-----------IKGIVLASRDLYCIYNPIKTCDDKNY-- 186
Query: 132 AACRKRTASWVRA---LAAENPNIETCEF--FENYEKAASAAVLP-PGVYT--------L 177
W A L + +I C + F + K V+ VY
Sbjct: 187 ---------WCTAKPNLLLKLKHINPCPYRPFGDDGKVLPHVVMACQAVYKELNGIIKPQ 237
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKV---AGII----SKEMQKESV 230
++L ++ CPY+ AR + +++ Y ++ + + I + Q+E V
Sbjct: 238 EELVKVCQKHNLCPYYYARWATVRSKLILCPYNFVTSVSIRHSSDIFLIDQNSAHQREFV 297
Query: 231 VVFDEAHNIDNVCIEALSV----SVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYN 286
+V DEAHN+++ +++L+ S+ QT+E + R+ Q E F L E
Sbjct: 298 LVMDEAHNVEDAFMDSLTFNFTESLLNQTIETIKFHKKRVKQIPENFLTIS---LLTELI 354
Query: 287 RLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLET 346
+E ++ W+ N +LP + +EH+L+ + +L
Sbjct: 355 STIESFSI---------WMKNRSLP-----------YKDSEHYLYGVFEDQAFLPF---- 390
Query: 347 ENVEKEGPVS-FVASITAHAGI------------DQKTLR----FCYERLHSLMLTLEIT 389
VE+ P S + +I+ + + + +R F + + ++ +++
Sbjct: 391 --VERSPPSSRLLEAISEYIKVVDDLDDLDIFTREPHAIRYINSFTTQYIEMILFYIQVF 448
Query: 390 DTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFD 449
T T+ F +V T G ++ F P +P +LQ+
Sbjct: 449 RTP------TLTKFFKIVVTDHNGLREML--FRCLSPSLPMSLLQMVV------------ 488
Query: 450 RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS-----LTRDCICPMVLTRG----SD 500
+SV+ SGTLSP+ + L+ V + F +S L+ + + P G S
Sbjct: 489 --RSVIFASGTLSPMKAMAQELDIKEHVYKDFIISPGYRMLSTEHVVPPSRVFGRIIISS 546
Query: 501 QLPVSTKFDMRS--DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGIL 558
L S F ++ D + G + ++S G + FF SY+ ++ I+ W GI
Sbjct: 547 SLGKSFIFTKKTSQDNEMIEQAGDTMFRVLSKSRGGALVFFSSYNMLNRIVELWKQHGIY 606
Query: 559 KEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLV 618
++ + K +FIE++D E Y+ +GAVF V RGK++EGIDF RLV
Sbjct: 607 TQLNKLKAIFIESKDKNEFKKDFKEYQ--IQSKKGAVFLGVFRGKLSEGIDFGDDMARLV 664
Query: 619 IMFGVPF 625
I+ G+P+
Sbjct: 665 IVVGIPY 671
>gi|242087259|ref|XP_002439462.1| hypothetical protein SORBIDRAFT_09g007185 [Sorghum bicolor]
gi|241944747|gb|EES17892.1| hypothetical protein SORBIDRAFT_09g007185 [Sorghum bicolor]
Length = 590
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 123/485 (25%), Positives = 214/485 (44%), Gaps = 59/485 (12%)
Query: 162 EKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
+K + V G ++DL GK+ G CPY+ +R M++ A++VV YQ LL +
Sbjct: 8 QKEFRSEVSNQGALDIEDLARIGKKIGTCPYYGSRDMIRSADLVVLPYQSLLLKSARESL 67
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRL 281
+ K SVV+ DEAHN+ + + + L+ LS +++ + RF L
Sbjct: 68 GLNL-KNSVVIIDEAHNLADSLTNMYNSKITSSQLKTV---LSHLDEYLNRFHNV----L 119
Query: 282 RAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLR 341
A R ++ L + L+ L I K+ N+ + Q+L
Sbjct: 120 GAANRRYIQTLTV----------LTRSFLRVLINKQDGASNMSSMT--------INQFLF 161
Query: 342 GRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHI---Q 398
L+ +N+ FV + I K + +L S+ +I DE I Q
Sbjct: 162 S-LDIDNINIVKLCQFVK----ESNIIHKVSGYA-NKLTSIQNQFDIQLHDEGSSIACLQ 215
Query: 399 TICDFA-TLVGTYTRGFSIIIEPFDERMPHIPDPV-LQLSCHDASLAVKPVFDRFQSVVI 456
+ DF +L+ + G I+ + +++ PD L+ A V +V++
Sbjct: 216 ALVDFIRSLLNSNNDGRIIVAK---QKLGGQPDEAYLKFVMLCAEKIFSEVTQDAYAVIL 272
Query: 457 TSGTLSPID-----LYPRLLNFHPVVSRSFKMS--LTRDCICPMVLTRGSDQLPVSTKFD 509
GTL PI+ L P L P + F + + + I P+ +TRG + ++
Sbjct: 273 AGGTLQPIEETRLRLCPSL---PPTDIKFFTCNHIVPPESILPIAVTRGPSGMTFDFSYN 329
Query: 510 MRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFI 569
RS P + G+ + ++++VP+G+V FF SY Y + W +G + +I + K VF
Sbjct: 330 SRSSPSMIEELGRFICNIITVVPEGVVMFFSSYDYERRVYDAWMTAGTISKISKKKHVFR 389
Query: 570 ETQDVVETTLALDNYRKACD-CGR--------GAVFFSVARGKVAEGIDFDRHYGRLVIM 620
E ++ + L+ Y++ + C + GA+ +V GK++EGI+F GR VIM
Sbjct: 390 EPRNSADVEGVLNKYKETIESCSKISQDTGVNGALLLAVVGGKISEGINFSNGMGRCVIM 449
Query: 621 FGVPF 625
G+P+
Sbjct: 450 VGLPY 454
>gi|345563336|gb|EGX46339.1| hypothetical protein AOL_s00110g163 [Arthrobotrys oligospora ATCC
24927]
Length = 920
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 141/619 (22%), Positives = 251/619 (40%), Gaps = 106/619 (17%)
Query: 66 NPVKLIYCTRTVHEMEKTLAELKLLH---NYQ-----TRHLGPAAKILAIGLSSRKNLCV 117
+ +K+ YC+RT ++ + AEL+ +H Y+ P + + L SRK LC+
Sbjct: 221 DEIKIFYCSRTHSQLSQFTAELRRVHLPPTYEDDLTEESEEKPEEVVKHLSLGSRKLLCI 280
Query: 118 NSRVLAAENRDSVDA-ACRKRTASWVRALAAEN------PNIETCEFFENYEKAASAAVL 170
N +V N S A R ++ +AEN P + N E A
Sbjct: 281 NDKV----NTPSASANTVNDRCLDLQQSKSAENKCPFLLPKADNQRNVLNREFRDLALA- 335
Query: 171 PPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESV 230
+ ++DLR G++ C Y+ +R ++ ++ Y LL K + K K +
Sbjct: 336 --DIKDIEDLRGVGEKLKICGYYASREAIKPTEIITLPYPLLLQ-KSSREALKISVKNHI 392
Query: 231 VVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---AEYNR 287
++ DEAHN+ + SVS+ L NL+ I +F G R A+ +R
Sbjct: 393 IIIDEAHNLMDAVSNIHSVSISLSQLTKCADNLAAY---ILKFGKKLKGGNRVYVAQCHR 449
Query: 288 LVEGLALRGNLPIADAWLSN--------------PALPSDILKEAVPGNIRRAEHFLHVL 333
LV+ L WL + P +P +K+ ++ + +H+L
Sbjct: 450 LVKTLK---------TWLEDKFSIQPNAIDPKVPPKIPDGTVKQGDLLQLKGIDQ-IHIL 499
Query: 334 R--------RLVQYLRG--------RLETENVEKEGPVSFVASITAHAGIDQKTLRFCYE 377
+ +L + + G +L + +++ P + + G+
Sbjct: 500 KLGKYLEESKLARKVEGYTMFQENEKLADQAKKQKIPAAKARKVATSGGLP------VLS 553
Query: 378 RLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSC 437
+++ +LTL + + + I D GF ++
Sbjct: 554 HVYAFLLTLTNPEKEGKVFYGPIDDAGAKDFRAAVGFRYML------------------- 594
Query: 438 HDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS-----LTRDCICP 492
D + K + + ++VV+ GT+ P+ Y L F + S +M + +D +
Sbjct: 595 LDPTHHFKDLVEDARAVVLAGGTMEPMSDYVNHL-FPYLPSERLRMVSCGHVIPQDNMLA 653
Query: 493 MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW 552
M + G F+ R+ P + GK + + ++P G+V FF SY+Y++ ++ W
Sbjct: 654 MTVPMGVTNQAFEFTFEKRNGPKLITELGKTIFNLCKVIPHGVVVFFPSYAYLETVVKVW 713
Query: 553 NDSG------ILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAE 606
+ G I + + K VF E + L +Y KA D G+GA+ SV GK++E
Sbjct: 714 EEKGPEGTASIYENLQSRKAVFREAKGSSSVEDILRDYAKAVDEGKGALLLSVVGGKMSE 773
Query: 607 GIDFDRHYGRLVIMFGVPF 625
GI+F + GR VIM G+PF
Sbjct: 774 GINFSDNLGRGVIMVGLPF 792
>gi|431890862|gb|ELK01741.1| Fanconi anemia group J protein [Pteropus alecto]
Length = 1164
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 144/583 (24%), Positives = 245/583 (42%), Gaps = 67/583 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 245 KIYFGTRTHKQIAQITRELR-----RTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 295
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP--PGVYT---LQDLRAF 183
C + + N ++C F+ K + L G+Y +++L +
Sbjct: 296 E---KCME---------LLDGKNGKSCYFYHGVHKISDQHTLQTFQGMYKAWDIEELISL 343
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR +++ A+++ Y YLLD ++ + + KE V++ DEAHNI++
Sbjct: 344 GKKVKACPYYTARELMENADIIFCPYNYLLDAQIRESMDINL-KEQVIILDEAHNIEDCA 402
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
E+ S SV L A L S +N I + D G LRA L+ L +
Sbjct: 403 RESASYSVTEVQLRFARDELDSMVNNNIRK---KDHGPLRAVCYGLINWLEANSEHLVER 459
Query: 303 AWLSNPAL--PSDILKEAVPGNIRRAE------HFLHVLRR--LVQYLRGRLETENVEKE 352
+ S+ + S++L I A HF VL++ + + G+ E +E
Sbjct: 460 DYESSCKIWSGSEMLLNLQKMGITTATFPILQGHFSAVLQKEEKISSIHGKEEA----RE 515
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
P+ I+A I K L + L D + QT
Sbjct: 516 VPI-----ISASTQIMLKGLFMVLDYL--FRQNGRFADDYKVAIQQTYSWINQTDALDKN 568
Query: 413 GFSIIIEPFDERMPHIPDPV--LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRL 470
GF ++ P +++ V L C + ++A + D+ ++V+TSGTLSP+ +
Sbjct: 569 GFLVL--PKNKKCLRQKTAVHVLNFWCLNPAVAFSDINDKVWTIVLTSGTLSPMKSFSSE 626
Query: 471 LNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSI 530
L + + + + G + F G LL+ +
Sbjct: 627 LGVTFTIQLEANHVINNSQVWVGTIGSGPKGQNLCATFQHTETFAFQDEVGALLLSVCQT 686
Query: 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ--------DVVETTLALD 582
V GI+CF SY ++++ W D+G+ +++ K V IE Q ++++
Sbjct: 687 VSQGILCFLPSYKLLEKLKERWLDTGLWRDLELVKTVIIEPQRGEKTNFDELLQVYYDAI 746
Query: 583 NYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y+ D GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 747 KYKGGKD---GALLVAVCRGKVSEGLDFSDDNARAVITIGIPF 786
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V + FP YP Q + M + R L+ K HCLLE PTG+GK++ALL ++ S
Sbjct: 8 YTIGGVKINFPC-KAYPSQLAMMNSIVRGLNNKQHCLLESPTGSGKSLALLCSALAWQQS 66
Query: 63 KPENPV 68
PV
Sbjct: 67 LSGKPV 72
>gi|18977305|ref|NP_578662.1| DNA repair helicase rad3 [Pyrococcus furiosus DSM 3638]
gi|18892976|gb|AAL81057.1| DNA repair helicase rad3, putative [Pyrococcus furiosus DSM 3638]
Length = 631
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 152/638 (23%), Positives = 267/638 (41%), Gaps = 123/638 (19%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
YFPY+ + P Q ++ +K A+ + ++E PTG GKTI++L+ + Y +S K+
Sbjct: 6 YFPYERLRPNQREFIEIVKEAVKRGENLIVEAPTGFGKTISVLAGVLPYAISL---GYKV 62
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
+Y RT +M++ + ELK + ++ I SR++LC++S +
Sbjct: 63 VYLARTHKQMDRVIEELKKIRERN--------EVSGIEFRSRRDLCLHSYIQTFVQ---- 110
Query: 131 DAACRKRTASWVRALAAENPNIETCEFFENYEKAA-----------SAAVLPPGVYTLQD 179
DA +R L C FFEN ++ ++ P V +
Sbjct: 111 DAYTSMIVCKTLRKLG-------KCPFFENIKEKRDRVEEIVRFFLNSPPFPHEVLEYSE 163
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEA 236
L CPY + + + + ANV+V SY Y++ P + + + + +V+FDEA
Sbjct: 164 LLEL------CPYEITKKIGEKANVIVASYLYMISPPIRQAFLENLGVDYSDLIVIFDEA 217
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRG 296
HN+ + I ALS + + R++ R +E E + D + + LRG
Sbjct: 218 HNLPDQAISALSDRL-------SIRSIERAIKEAEEYGEKDIENFLS--------ILLRG 262
Query: 297 NLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVL-------RRLVQYLRGRLETENV 349
+ L N E VP IR E FLHV R + L +E +
Sbjct: 263 LEILYKEKLENYE------SEEVP--IRPEEVFLHVASVLGWSGREIGMMLEDMIEVGDA 314
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
+E + ++ G + F + L + + +++LH+ T
Sbjct: 315 IREDRIERNLPPRSYVG---RVGEFLWN-------WLALREREDYLHL----------FT 354
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
RG + L+L D S+A++ + S + SGTLSP++ +
Sbjct: 355 KERGLA-----------------LELVALDPSVALE-FLEEVHSAIFMSGTLSPLEAFRD 396
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
++ + + +M + I +++ R VST+ RS P + R + + E V
Sbjct: 397 IIGVKAELKKFPRMIKRENAI--VLVARD-----VSTRGIERS-PSLYRRISEYIFEAVR 448
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV--ETTLALDNYRKA 587
P + F SY ++ I++T I +EI K VFIE +D E + +++
Sbjct: 449 NTPKNVGVFTASYEVLEGILSTNVHIKIEEEI--GKKVFIEKRDAPSRENDEMIRAFKEE 506
Query: 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
G+GAV F V G+ +EG D+ V++ G+P+
Sbjct: 507 SK-GKGAVLFGVMGGRNSEGQDYSGDEMNGVVLVGIPY 543
>gi|397651437|ref|YP_006492018.1| DNA repair helicase rad3 [Pyrococcus furiosus COM1]
gi|393189028|gb|AFN03726.1| DNA repair helicase rad3 [Pyrococcus furiosus COM1]
Length = 647
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 152/638 (23%), Positives = 267/638 (41%), Gaps = 123/638 (19%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
YFPY+ + P Q ++ +K A+ + ++E PTG GKTI++L+ + Y +S K+
Sbjct: 6 YFPYERLRPNQREFIEIVKEAVKRGENLIVEAPTGFGKTISVLAGVLPYAISL---GYKV 62
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
+Y RT +M++ + ELK + ++ I SR++LC++S +
Sbjct: 63 VYLARTHKQMDRVIEELKKIRERN--------EVSGIEFRSRRDLCLHSYIQTFVQ---- 110
Query: 131 DAACRKRTASWVRALAAENPNIETCEFFENYEKAA-----------SAAVLPPGVYTLQD 179
DA +R L C FFEN ++ ++ P V +
Sbjct: 111 DAYTSMIVCKTLRKLG-------KCPFFENIKEKRDRVEEIVRFFLNSPPFPHEVLEYSE 163
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEA 236
L CPY + + + + ANV+V SY Y++ P + + + + +V+FDEA
Sbjct: 164 LLEL------CPYEITKKIGEKANVIVASYLYMISPPIRQAFLENLGVDYSDLIVIFDEA 217
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRG 296
HN+ + I ALS + + R++ R +E E + D + + LRG
Sbjct: 218 HNLPDQAISALSDRL-------SIRSIERAIKEAEEYGEKDIENFLS--------ILLRG 262
Query: 297 NLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVL-------RRLVQYLRGRLETENV 349
+ L N E VP IR E FLHV R + L +E +
Sbjct: 263 LEILYKEKLENYE------SEEVP--IRPEEVFLHVASVLGWSGREIGMMLEDMIEVGDA 314
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
+E + ++ G + F + L + + +++LH+ T
Sbjct: 315 IREDRIERNLPPRSYVG---RVGEFLWN-------WLALREREDYLHL----------FT 354
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
RG + L+L D S+A++ + S + SGTLSP++ +
Sbjct: 355 KERGLA-----------------LELVALDPSVALE-FLEEVHSAIFMSGTLSPLEAFRD 396
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
++ + + +M + I +++ R VST+ RS P + R + + E V
Sbjct: 397 IIGVKAELKKFPRMIKRENAI--VLVARD-----VSTRGIERS-PSLYRRISEYIFEAVR 448
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV--VETTLALDNYRKA 587
P + F SY ++ I++T I +EI K VFIE +D E + +++
Sbjct: 449 NTPKNVGVFTASYEVLEGILSTNVHIKIEEEI--GKKVFIEKRDAPSRENDEMIRAFKEE 506
Query: 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
G+GAV F V G+ +EG D+ V++ G+P+
Sbjct: 507 SK-GKGAVLFGVMGGRNSEGQDYSGDEMNGVVLVGIPY 543
>gi|321248407|ref|XP_003191119.1| CHL1 helicase [Cryptococcus gattii WM276]
gi|317457586|gb|ADV19332.1| CHL1 helicase, putative [Cryptococcus gattii WM276]
Length = 854
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 148/606 (24%), Positives = 260/606 (42%), Gaps = 100/606 (16%)
Query: 72 YCTRTVHEMEKTLAEL--KLLHNYQTRHLGPAAKILAIGLS-----SRKNLCVNSRVLAA 124
Y +RT ++ + +EL NY P+A+ + G+S SRK LC+N +V
Sbjct: 192 YTSRTHTQLRQLTSELLKTSFANYDPMPESPSAEAPSHGVSLVPLGSRKQLCINEKV--- 248
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAA---------VLPPGVY 175
RALA + + E + +K A ++ V
Sbjct: 249 ------------------RALARKGGDERMNEACLDMQKPAKTDEIMMLDARDMILTSVK 290
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
++D+ A GK+ CPY+ R V+ + +V Y LL + + K VVV DE
Sbjct: 291 DIEDIVAVGKKSCVCPYYATRKAVKQSQIVTLPYNLLLQKNAREALGINL-KNQVVVIDE 349
Query: 236 AHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA-- 293
AHN+ + + S ++ L A LS++ Q ++RFK+ RL+++++ ++ +
Sbjct: 350 AHNLIDTILSIYSTTLTSVNLANA---LSQLRQYLQRFKS----RLKSKHSLWIQQVLSL 402
Query: 294 LRGNLPIADAWLSNPALPSDILK-------EAVPGN--IRRAEHFLHVLR--RLVQYLRG 342
L+G + + D ++ + + K E + N +RR + LV YL+
Sbjct: 403 LQGLIRVCDKFIQDSKSQAKGDKPVGMPKTEVIDANTLMRRIGGGSDQVNPVELVAYLKE 462
Query: 343 RLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICD 402
+ F + A + + H+ + I ++ FL
Sbjct: 463 SKLARKIS-----GFSEHVVEQASLKNAKIPRSATARHASITAFHIVES--FL------- 508
Query: 403 FATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLS 462
+LV G I+ D+ P V++ + S K V + +SVV+ GT+
Sbjct: 509 -LSLVDAKDDGR--ILLSIDDLNKSEPVVVIKYILLNPSERFKEVIEDARSVVLAGGTME 565
Query: 463 PIDLYPRLLNFHPVVSRSFKMSLTRDCICP------MVLTRGSDQLPVSTKFDMRSDPGV 516
PI + L P + + ++L+ + P V++ G + KF R+D +
Sbjct: 566 PITDF--LQQLFPSIPKDRLLTLSCSHVIPKENLLTQVVSVGPRKSEFEFKFGNRNDEAL 623
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK-LVFIETQDV- 574
+ G +L ++ +VPDG+V F SY+++D++ A W SG+L+ + + K +F E Q
Sbjct: 624 LTDLGAVLQAIIGVVPDGVVVFLPSYAFLDKVRAFWMKSGLLQRLGERKQQLFYEPQTSG 683
Query: 575 -VET-----TLALDNYRKACDCGR-----GAVFFSVARGKVAEG----IDFDRHYGRLVI 619
VET LA+ + G+ GA+ F+V GK++EG I+F + GR VI
Sbjct: 684 DVETILRDYALAITSCHATSAAGQKSRKTGALMFAVVGGKLSEGASCCINFSDNLGRCVI 743
Query: 620 MFGVPF 625
M G+PF
Sbjct: 744 MVGLPF 749
>gi|449455726|ref|XP_004145602.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
homolog [Cucumis sativus]
Length = 1042
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 147/629 (23%), Positives = 261/629 (41%), Gaps = 108/629 (17%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQTRHLGP 100
P+ +L+S T L P N ++ T++ +T +++ +++ Y+
Sbjct: 123 QPSSKNIKGSLVSTDTESSLPGPNNKIRKKKTAPTIYYSSRTHSQISQVIREYRK----T 178
Query: 101 AAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFEN 160
A ++ L+SRK+LC N RV +D++D C+ L ++ + C F+N
Sbjct: 179 AYRVPMAVLASRKHLCTNPRV---RGKDNLDEKCK---------LLLKDQDA-GCSEFKN 225
Query: 161 YEKAASAAVLPPG----VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPK 216
K L G V+ +QDL G+ C Y+ AR M A +V Y Y+++P
Sbjct: 226 GNKVKCHPTLQKGGRHEVHDIQDLVKTGEAVKGCSYYAARSMADDAQLVFCPYSYIINPV 285
Query: 217 VAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR---INQEIERF 273
+ I ++ K+++V+FDEAHNI+++ SV + TL L + IN + +
Sbjct: 286 IRRAIGVDV-KDAIVIFDEAHNIEDIARHGGSVDIEEDTLNKLQMELEQLCFINYLVYQP 344
Query: 274 KATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVL 333
L++ +R L R W N A +E NI + + F +L
Sbjct: 345 LYEMTQDLKSWIDRRKTTLQEREFQHYVTCWTGNHA-----QRELQEANITQ-QCFPILL 398
Query: 334 RRLVQYLRGRLETENVEKEGPVSFVASITAH-AGIDQKTLRFCYERLHSLMLTLEITDTD 392
+ + S+ S AH +G+ +LTLE
Sbjct: 399 ECATKATKA------------ASYTVSDDAHLSGLS--------------VLTLEGL--- 429
Query: 393 EFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIP----DPVLQLSCHDASLAVKPVF 448
++ F + G + + + ++ + +R P L L C + ++ + +
Sbjct: 430 ----FSSLTYFFSRNGCHMSDYQLALQRYTKRDPEKACAKWTVTLSLWCLNPAVVFRDIG 485
Query: 449 DRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSL-------TRDCICPMVLTRGSDQ 501
D SV++TSGTLSP++ +F + F SL + P +++ G
Sbjct: 486 DLSLSVILTSGTLSPLN------SFSSELGVRFGTSLEAPHVIDVESQVWPAIISIGPGY 539
Query: 502 LPVSTKFDMRSDPGVARN-YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
L + +F ++ GK L E+ I P G + FF SY M+++ W+++G
Sbjct: 540 LNLYVRFSCLILAIFLKDALGKSLEEIFFIAPGGCLVFFPSYKLMEKLRNRWSETGQWSR 599
Query: 561 IMQHKLVFIE----TQDVVETTLAL--------------------DNYRKACDCGRGAVF 596
+ K +F+E Q+ ++ L ++Y C+ +GA
Sbjct: 600 LNARKSLFVEPCGGAQEDFDSILKGYYDTIRLGDNFAVGKKVKPDESYVFGCENPKGAAL 659
Query: 597 FSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+V RGKV+EGIDF R+VI+ G+PF
Sbjct: 660 LAVFRGKVSEGIDFSDDNARVVIIVGIPF 688
>gi|14590576|ref|NP_142644.1| hypothetical protein PH0697 [Pyrococcus horikoshii OT3]
gi|3257105|dbj|BAA29788.1| 641aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 641
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 151/643 (23%), Positives = 267/643 (41%), Gaps = 133/643 (20%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
YFPY+ P Q ++ +K A+ + ++E PTG GKTI++L+ + Y +S K+
Sbjct: 6 YFPYEKFRPNQREFIEIVKEAVKRGENLIVEAPTGFGKTISVLAGVLPYAISL---GYKV 62
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
+Y RT +M++ + EL R +G +++ I SRK+LC+++ + +
Sbjct: 63 VYLARTHKQMDRVIEEL--------RKIGEKSEVSGIEFRSRKDLCLHAYIQTF----AQ 110
Query: 131 DAACRKRTASWVRALAAENPNIETCEFFENYEKAASAA--------VLPPGVYTLQDLRA 182
DA +R L C+++EN ++ PP +++
Sbjct: 111 DAYTSMIVCKSLRKLG-------KCKYYENLKEKRDRVDEIVKFFLSFPP---FPREVIE 160
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEAHNI 239
+ + CPY + + + + ANVVV SY Y++ P + + + + +V+FDEAHN+
Sbjct: 161 YSELLELCPYEITKKVGEKANVVVASYLYMISPPIRQAFLENLGVDYSDLIVIFDEAHNL 220
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
+ I ALS + + R++ R +E E + D + + LRG
Sbjct: 221 PDQAISALSDRL-------SVRSIERAIKEAEEYGEKDIENFLS--------ILLRGLEI 265
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVL-------RRLVQYLRGRLETENVEKE 352
+ L N E +P IR E FLH R + L +E + +E
Sbjct: 266 LYKEKLENYE------SEEIP--IRPEEVFLHPASILGWRGRDIGMMLEDMIEVGDAIRE 317
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
+ ++ G + F + L + D +++LH+ T +
Sbjct: 318 DRIERNLPPRSYVG---RVGEFLWN-------WLSLRDREDYLHL----------FTKEK 357
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY----- 467
G + L+L D S+A+ + S + SGTLSP++ +
Sbjct: 358 GLA-----------------LELVALDPSVALD-FLEEVHSAIFMSGTLSPLEAFRDIIG 399
Query: 468 --PRLLNFHPVVSRSFKMSL-TRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLL 524
RL F +V R + L RD V TRG ++ P + + + +
Sbjct: 400 VNARLKKFPRIVKRENAIVLVARD-----VSTRGIER-----------SPPLYKRIAEYI 443
Query: 525 VEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV--ETTLALD 582
E V P + F SY ++ +++T I +E+ K VFIE +D E +
Sbjct: 444 FEAVKNTPKNVGVFTASYEVLEGVLSTNVHIKIEEEV--GKKVFIEKKDAPSRENDEMIR 501
Query: 583 NYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+++ G+GAV F V G+ +EG D+ VI+ G+P+
Sbjct: 502 EFKEESK-GKGAVLFGVMGGRNSEGQDYSGDEMNGVILVGIPY 543
>gi|123493892|ref|XP_001326390.1| helicase [Trichomonas vaginalis G3]
gi|121909304|gb|EAY14167.1| helicase, putative [Trichomonas vaginalis G3]
Length = 717
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 142/669 (21%), Positives = 281/669 (42%), Gaps = 106/669 (15%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
+++ + F Y Q + ++ +A E PTGTGK++++L+ +++ K
Sbjct: 7 IQNAKLKFGATKPYSIQTEFATDMIKAFQENKIGFFESPTGTGKSMSVLTSSLAFIQEKN 66
Query: 65 ENPV------------------------KLIYCTRTVHEMEKTLAELK---LLHNYQTRH 97
++ KLI CTRT ++++ + ELK LL +R
Sbjct: 67 KDIADSYAYGTDNDDIADILYANKPKRSKLIVCTRTHSQIKELVNELKRPSLLRYKDSRR 126
Query: 98 LGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEF 157
I L+SR+ LC+N V A + ++ C+K +C++
Sbjct: 127 T-----TRCISLASRRFLCIND-VYANYSGSELNNVCKK-----------------SCDY 163
Query: 158 FENYE--KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP 215
++N++ KA + + ++DL +FG+ +CPYF +R ++F++V++ YQ L
Sbjct: 164 YKNFKDRKADILKKISTEPHDIEDLMSFGRAGIFCPYFASRATIRFSDVILMPYQTLFQQ 223
Query: 216 KVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRR-QTLEGATRNLSRINQEIERFK 274
+ + ++ + +V DE HN+ + S+S+ + + + G T L ++ + K
Sbjct: 224 QTLESLKIDIS-NAYIVIDEGHNLVDALNSMYSISLTKAEDITGVTNGLKEFQMKLTKVK 282
Query: 275 ATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNI----RRAEHFL 330
G + + ++L + P+ + P + LK+ + N+ R A +
Sbjct: 283 ----GPISEDPSKLEDDKK-----PVEET-------PQNQLKKEIMMNMSTLNRIATGII 326
Query: 331 HVLRRLVQ-YLRGRLETENVEKEGPVSFVASITAHAGIDQKTL--RFCYERLHSLMLTLE 387
V+ ++ + L +E + ++ + + + +K+L R C ++ L
Sbjct: 327 SVMNKVAKGQLPKVMEMNDFQESSGLRNINPFILLDFVHEKSLVYRICGKKEEKERL--- 383
Query: 388 ITDTDEFLHIQTICDFATLVGTYTR-GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKP 446
+ T F + + F +G + G I+ E M P SL
Sbjct: 384 -SSTTAF---RKLLQFVEAMGNPDKYGRVIVTENSVSYMLLNP-----------SLVFAQ 428
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLLNFHPVVSRSFKMSLTRDCICP-----MVLTRGSD 500
V +SV + GTL P DL +L++ + + + I L G +
Sbjct: 429 VAKTAKSVCLVGGTLQPFSDLTAQLIDQNSIPEDRIFTHVNGHVILAENALTFCLHTGPN 488
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + ++ R + + G+ +E+ +VP GI+ FF S+ +++ ++
Sbjct: 489 KEKLGFTYETRQNERLFDEIGQSCLELSCVVPGGIIYFFTSFDILNKAYKYIETKSYKEK 548
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRHYGR 616
I HK + ETQ+ + + ++ D R GAV F+V GK++EGI+F Y R
Sbjct: 549 IENHKFILKETQNPNDLDKLMRTFKSHIDKQRGDFTGAVLFAVMNGKLSEGINFANDYCR 608
Query: 617 LVIMFGVPF 625
V+ G+PF
Sbjct: 609 CVVCVGMPF 617
>gi|71000721|ref|XP_755042.1| DNA helicase [Aspergillus fumigatus Af293]
gi|74673836|sp|Q4WWE9.1|CHL1_ASPFU RecName: Full=ATP-dependent RNA helicase chl1; AltName:
Full=Chromosome loss protein 1
gi|66852679|gb|EAL93004.1| DNA helicase, putative [Aspergillus fumigatus Af293]
Length = 782
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 139/617 (22%), Positives = 251/617 (40%), Gaps = 124/617 (20%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLH------------NYQTRHLGPAAKILAIGLSSR 112
++ VK+ YC+RT ++ + +EL+ + + T + K L +G SR
Sbjct: 117 DDDVKIFYCSRTHSQLSQFSSELRRVKMPSSMPAELSTSDANTDEVQERVKHLTLG--SR 174
Query: 113 KNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNI---ETCEFFENYEKAASAAV 169
KNLC+N +V++ N +++ C L + P I + C + + E +
Sbjct: 175 KNLCINPKVMSLGNAAAINERC----------LELQQPGIAAEKRCPYLPSKEDEGQ--I 222
Query: 170 LPPGVYTL------QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISK 223
L +TL +D+ GK+ G CPY+ +R +++ + V+ Q ++ ++ +
Sbjct: 223 LQFRDHTLATIKDIEDMGKLGKRMGICPYYASRSVLKHSENVLLKAQKIVTLPYPLLLQR 282
Query: 224 EMQ-------KESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKAT 276
+ K VV+ DEAHN+ + SV++R L+ A L ++ + KA
Sbjct: 283 SARDALDLSIKNHVVIIDEAHNLMDAICNIHSVTIRLSQLQTA---LLQLTTYAHKHKAR 339
Query: 277 DAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRL 336
G+ R+ ++ + RL
Sbjct: 340 LKGKNRS---------------------------------------------YIAQIIRL 354
Query: 337 VQYLRGRLET---ENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDE 393
V +R L + +N+ EG V + + A G+DQ L L ++ E
Sbjct: 355 VSSIRDHLRSILGQNLPAEGTVD-PSDLMAGKGVDQINPYKLSRYLQESKLARKVDGYVE 413
Query: 394 FL---HIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHD----------A 440
FL + Q+ ++ V + F + + P L CHD
Sbjct: 414 FLKNKNQQSDDKPSSPVLFLVQSFLLSL-----MNPSAEGRFFYLKCHDDIQLRYMLLDP 468
Query: 441 SLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR----SFKMSLTRDCICPMVLT 496
+ + + + ++V++ GT+SP+ Y L + SR S+ + + + L
Sbjct: 469 TNQFREIVEDARAVILAGGTMSPMSDYRNHLFSYIAPSRLDTFSYGHVIPPENLIAHTLV 528
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW---- 552
G +D R + + G+ + + +PDG+V FF SY Y+ I+A W
Sbjct: 529 NGVLGSEFDFTYDSRDSEKMILDLGRTVATLCQAIPDGVVAFFPSYDYLSRIVAIWRKPL 588
Query: 553 -NDSG--ILKEIMQHKLVFIETQDV-VETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ G IL I + K + E +D+ +T L Y + D G+GA+ SV GK++EGI
Sbjct: 589 EGEKGETILSLIEREKSILYEGRDMGPKTDDLLQEYTRTIDSGQGALLLSVVGGKLSEGI 648
Query: 609 DFDRHYGRLVIMFGVPF 625
+F GR V++ G+PF
Sbjct: 649 NFSDKLGRGVLIIGLPF 665
>gi|307186827|gb|EFN72247.1| Probable ATP-dependent RNA helicase DDX12 [Camponotus floridanus]
Length = 861
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 139/612 (22%), Positives = 264/612 (43%), Gaps = 98/612 (16%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK-ILAIGLSSRKNLCVNSRVLAAEN 126
K+ +C+RT ++ + + ELK P ++ I + LSSR+N C+N V ++
Sbjct: 194 TKIFFCSRTHSQLTQFVHELKR---------SPYSQDISVVPLSSRQNYCINKSVKRLKH 244
Query: 127 RDSVDAAC----RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
+ ++ C RK+T + C F +K A VL + ++++
Sbjct: 245 INLINETCLQLQRKKTTVKKEKDLKKLKTSSGCPFVPGDQKLLMAEVLT-NIKDIEEIAQ 303
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G++ CPY+ +R +Q +++ Y +L + ++ K +V++ DEAHN+ +
Sbjct: 304 KGQENDTCPYYGSRKSLQSGQLILVPYNSILHKSTRDSLGIDL-KGNVLIIDEAHNLLDA 362
Query: 243 CIEALSVSVRRQTLEGATRNL----SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IE + SV + G RNL S++ Q +RF++ + + ++L L+ L
Sbjct: 363 -IEGMHSSV----ITG--RNLLHCYSQLLQYQKRFESLFSAKSVLYLSQL--SFCLKKLL 413
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHF--------LHVLR--------RLVQYLRG 342
+ A + + PSD + ++V + + E F +++ + +L+ L+G
Sbjct: 414 TLFGA--TTKSHPSDEINKSVTPKLYKIEEFELLTEIDTVNIFKLLEFVKTSKLIHKLQG 471
Query: 343 ---------RLETENVEKEGPVSFVASI----TAHAGIDQKTLRFCYERLHSLMLTLEIT 389
++ + ++K G F+ SI T+ G T +I+
Sbjct: 472 FVEQYGNSIKIHEQKIKKSGITEFLDSIKNKNTSSLGTSN---------------TADIS 516
Query: 390 DTDEFLH---IQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKP 446
D +E + I +F + + I I P I +++ + +
Sbjct: 517 DNNEEQTSNPLMVILNFLECLKSRCIDGRICILP----AATIGQGIIKFLLLNPATHFHD 572
Query: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM------VLTRGSD 500
+ +SVV+ GT+ P+ + L M+ + D + P V+ RG
Sbjct: 573 IVRDARSVVLAGGTMEPMSEFIDQLFLMAGAMPDRIMTFSCDHVIPKENIISNVVIRGPT 632
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ F R D + G++L+ + +IVP GIV FF SYSY D + + SGI +
Sbjct: 633 GIEFEFNFHNRQDTKLLDELGRVLLNLCNIVPAGIVAFFPSYSYEDIVFKHLDKSGIASK 692
Query: 561 IMQHKLVFIETQDVVETTLALDNY-------RKACDCGRGAVFFSVARGKVAEGIDFDRH 613
I K ++ E + + + LD Y + C+ G++ FSV GK++EG++F
Sbjct: 693 ISIKKRIYREPKLASQVNVILDQYANFIKNPQPPCN---GSLLFSVVGGKLSEGLNFSDD 749
Query: 614 YGRLVIMFGVPF 625
GR +I+ G+P+
Sbjct: 750 LGRCIIVVGLPY 761
>gi|134107760|ref|XP_777491.1| hypothetical protein CNBB0650 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260183|gb|EAL22844.1| hypothetical protein CNBB0650 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 883
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 150/609 (24%), Positives = 265/609 (43%), Gaps = 93/609 (15%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAEL--KLLHNY-----QTRHLGPAAKILAIGLSSRKNLCV 117
E+ K+ Y +RT ++ + +EL +Y + P+ + + L SRK LC+
Sbjct: 215 EDAPKVYYTSRTHTQLRQLTSELLKTSFASYDSVPESSSAEAPSHGVSLVPLGSRKQLCI 274
Query: 118 NSRVLA-AEN--RDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-- 172
N +V A A N + ++ AC L + CEF KA +L
Sbjct: 275 NEKVRALARNGGDERMNEAC----------LDMQKSGKARCEFLP--AKADEITMLDARD 322
Query: 173 ----GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
V ++D+ GK+ CPY+ R V+ + +V Y LL + ++ K
Sbjct: 323 TILASVKDIEDIVTMGKKSCVCPYYATRKAVKQSQIVTLPYNLLLQKNSREALGIKL-KN 381
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRL 288
VVV DEAHN+ + + ++ L A +S++ Q ++RFK+ RL+ ++
Sbjct: 382 QVVVIDEAHNLIDTLLSIHCTTLTSTNLANA---VSQLQQYLQRFKS----RLKPIHSLW 434
Query: 289 VEGLA--LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLET 346
++ + L+G + + D + + + KE+ P + E L V + + G +
Sbjct: 435 IQQILSLLQGLIRVCDKFFQDAKSQT---KESKPVGKPKVE-VLDVNNLMGRIGGGSDQV 490
Query: 347 ENVE-----KEGPVS-----FVASITAHAGI-DQKTLRFCYERLHSLMLTLEITDTDEFL 395
+E KE ++ F + A + D KT R R S+ F
Sbjct: 491 NPIELLAYLKESRLARKISGFSEHVAEQAALKDAKTSRSATARHASIAA---------FH 541
Query: 396 HIQTICDFATLVGTYTRGFSII-IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSV 454
++++ +LV G I+ I+ D+ P + V++ + S K V + +SV
Sbjct: 542 NVESF--LLSLVDAKDDGRIILSIDDLDKSEPVV---VIKYVLLNPSERFKEVVEEARSV 596
Query: 455 VITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP------MVLTRGSDQLPVSTKF 508
++ GT+ PI + L P + + +L+ + P V++ G + KF
Sbjct: 597 ILAGGTMEPITDF--LQQLFPSIPKDRLSTLSCSHVIPKVNLLTQVVSVGPRKSEFEFKF 654
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
R+D + + G +L + +VPDG+V F SY+++D++ A W SG+L+ + + K +F
Sbjct: 655 GNRNDEALLTDLGAVLQATIGVVPDGVVVFLPSYAFLDKVRAFWTKSGLLQRLGERKQLF 714
Query: 569 IETQDV--VET-----TLALDNYRKACDCGR-----GAVFFSVARGKVAEGIDFDRHYGR 616
E Q VET LA+ + G+ GA+ F+ V GI+F + GR
Sbjct: 715 YEPQTSGDVETILRDYALAISSCYATSTSGQKSRKTGALMFA-----VVGGINFSDNLGR 769
Query: 617 LVIMFGVPF 625
VIM G+PF
Sbjct: 770 CVIMVGLPF 778
>gi|18543219|ref|NP_569898.1| CG11403 [Drosophila melanogaster]
gi|6018910|emb|CAB58099.1| EG:33C11.2 [Drosophila melanogaster]
gi|7290134|gb|AAF45598.1| CG11403 [Drosophila melanogaster]
gi|16197995|gb|AAL13769.1| LD24267p [Drosophila melanogaster]
gi|220945784|gb|ACL85435.1| CG11403-PA [synthetic construct]
gi|220955538|gb|ACL90312.1| CG11403-PA [synthetic construct]
Length = 861
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 159/623 (25%), Positives = 255/623 (40%), Gaps = 103/623 (16%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV----- 121
PV++ +C+RT ++ + +AEL+ + Q+ + +I L SR+ LC N V
Sbjct: 187 PVQIFFCSRTHSQLAQIVAELRKTPHGQS--------VRSISLGSRQQLCGNPAVRKLKH 238
Query: 122 LAAENRDSVDAACRKR--TASWVRALAAENPNIETCEFFENYEKAASA-------AVLPP 172
+ N +D A +K S L AE + C F KAAS A+ P
Sbjct: 239 VGLMNERCLDMATKKARPNPSKKSRLTAEANS--RCPF-----KAASLVESLRDLALTEP 291
Query: 173 GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
+++L G G C Y+ +R V+ A +++ YQ LL + + K S+V+
Sbjct: 292 --LDIEELANEGTACGGCSYYASRSAVEHAQLILLPYQLLLQKSARNQLGISL-KGSIVI 348
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGA----------------TRNLSRINQEIERFKAT 276
DEAHN+ + + + RQ LE A T+NL +INQ I +
Sbjct: 349 VDEAHNLLDSVAQLHGSEISRQQLERAKVQISGYKDHFQKRFTTKNLLKINQIIFIIR-- 406
Query: 277 DAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLR-- 334
RL++ L R L + ++ E NI E R
Sbjct: 407 ----------RLLKILDQRKELQSNGCSMMRTY---ELTAEGDFFNIDLCELLDFCARTR 453
Query: 335 --RLVQYLRGRLETEN--VEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITD 390
R VQ R+E E E + PVS S+ ++ L+ + + + + D
Sbjct: 454 FARKVQGRADRMEREPRPSENQAPVSTARSLILQRLASEQKLKEKTKSVKRRVEDINKED 513
Query: 391 TDEFLH-----------------IQTICDFATLVGTYTRGFSIIIEPFDERMPHIP-DPV 432
E L I+ + F + + I+++P + +I DP
Sbjct: 514 KAEELQEQQKPTKKPVEEVAPSPIRPLLAFLETLTSNAEDGRILVDPVGGTLKYILLDPA 573
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLN--FHPVVSRSFKMSLTRDC 489
Q + + +++VI GT+ P +L +L +V R + + D
Sbjct: 574 EQFA---------DIVAEARAIVIAGGTMQPTKELKEQLFTGCHDRLVERFYNHVVANDA 624
Query: 490 ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
I P V++ G P+S KF R + R +L + +VP G+VCF SY Y+D++
Sbjct: 625 ILPFVISNGPSGAPLSFKFAHRGSAEMLRELSMILRNLCQVVPGGVVCFLPSYEYLDKVY 684
Query: 550 ATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAEG 607
SG L+ I K VF E E LDNY A GA+ SV GK++EG
Sbjct: 685 KYLEQSGTLETISGRKSVFREVSGSAEQL--LDNYALAIKRPASYGALLLSVVGGKLSEG 742
Query: 608 IDFDRHYGRLVIMFGVPFQYTLS 630
++F GR V++ G+P+ +LS
Sbjct: 743 LNFADDLGRAVLVVGLPYSNSLS 765
>gi|408390405|gb|EKJ69805.1| hypothetical protein FPSE_10005 [Fusarium pseudograminearum CS3096]
Length = 863
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 139/597 (23%), Positives = 249/597 (41%), Gaps = 93/597 (15%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELK-----------LLHNYQTRHLGPAAKILAIGLSSRK 113
E P+K+ Y +RT ++ + + EL+ L +T+ A K+L LSSR+
Sbjct: 203 EEPIKIYYTSRTHSQLSQFITELRRPSFPPSLPTSLSKQEETKT--EAVKLLP--LSSRQ 258
Query: 114 NLCVNSRVLAAENRDSVDAACRK----RTASWVRALAAENPNIETCEFFENYEKAASAAV 169
LC+N V + +++ C + ++ + E+ +T +F + ++ A
Sbjct: 259 RLCINPAVSRLGSVQAINDRCSELQQPKSGQKCPFVPKEDLLSQTHQF-----RDSALAT 313
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
LP ++DL GK CPY+ +R + A ++ Y LL + +++ S
Sbjct: 314 LP----DIEDLHQLGKSLAVCPYYASRTALPGAEIITLPYPLLLQKSARDALGVKLEG-S 368
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS----RINQEIERFKATDAGRLRAEY 285
+V+ DEAHNI + + ++ L L R ++++ + GR+
Sbjct: 369 IVIVDEAHNIMDAVANVHAAEIKLSDLRRGRGMLGVYVKRFGKKLKGVNRVNVGRV---- 424
Query: 286 NRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHV-LRRLVQYLRGRL 344
R+++GL+ W+ P ++ R++ + + L+QY++
Sbjct: 425 ARVIDGLS---------EWMDGALKFKQEHGIVDPNDLTRSKGIDQINMFELIQYIQDSK 475
Query: 345 ETENVEKEGPVSFVASI-TAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDF 403
+E S+++ + + AG KT R LHSL+ FL
Sbjct: 476 LAFKIE-----SYISHVESEEAGT--KTPRSSTPVLHSLV---------SFL-------- 511
Query: 404 ATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSP 463
L + G F +++ PD L + A + ++V++ GT+SP
Sbjct: 512 IALTNLSSEG-----RIFYQKIKGTPDIQLSYLLLSPTHAFSSIASSARAVILAGGTMSP 566
Query: 464 IDLYPRLL--NFHP--VVSRSFKMSLTRDCICPMVLTRGSDQLP-VSTKFDMRSDPGVAR 518
D Y L + P V + S + + +C L P F R D +
Sbjct: 567 FDDYKDHLFPSLEPDKVTTLSCGHVIPPENLCVWTLASPRPGAPPFEFSFQKRGDTEMIT 626
Query: 519 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS------GILKEIMQHKLVFIETQ 572
G ++ + S+VPDG+V FF SY Y+DE++A W S + + K +F ET+
Sbjct: 627 QLGLAILNLCSLVPDGVVIFFPSYGYLDEVVAVWQKSQGASTQSVWDRLGTRKALFKETR 686
Query: 573 DVVETTLALDNYRKACDC----GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ L Y A G+GA+ SV GK++EGI+F GR V++ G+P+
Sbjct: 687 GASSEEV-LQEYSDAIQGEKSNGKGALLLSVVGGKMSEGINFSDRLGRCVLVIGLPY 742
>gi|308802574|ref|XP_003078600.1| Helicase of the DEAD superfamily (ISS) [Ostreococcus tauri]
gi|116057053|emb|CAL51480.1| Helicase of the DEAD superfamily (ISS) [Ostreococcus tauri]
Length = 970
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 156/680 (22%), Positives = 258/680 (37%), Gaps = 130/680 (19%)
Query: 10 VYFPYD-NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPV 68
V FP + +P Q M + R L K H ++E PTGTGKT+ALL ++ + +N V
Sbjct: 109 VKFPEGLDPHPAQMMTMSTIIRTLTRKEHAMIESPTGTGKTLALLCGALAW---QEKNKV 165
Query: 69 KLIYCTRTV----HEMEKTLAELKLLHNYQTRHLGPAA----------KILAIGLSSRKN 114
+++ T + EK E + TR P + G S N
Sbjct: 166 EMMASGMTTAVERAKYEKARVEYLMQKCDPTRKKPPVCAQGPGWSADDEYFKPGSGSSMN 225
Query: 115 ----LCVNSR--------------------VLAAENR----DSVDAACRK-------RTA 139
+C + VL++ R DA C++ +
Sbjct: 226 PKIFICSRTHSQLGQILGELKRTGYSPRYSVLSSRQRMCQMQKNDAECKQLIGSDEGKKK 285
Query: 140 SWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMV 199
+ N + E Y S + P + ++D + C +F R M
Sbjct: 286 TGTTGCPYYNKHTHVVRAMERYPLNGSQGMYPQ-AWDMEDFERVVDEVDGCSFFALRKMY 344
Query: 200 QFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQ----T 255
+ A+VV Y YL D + +S E + + V+ DE HNI++VC E S Q
Sbjct: 345 ESADVVFCPYNYLFDINIRRKMSIETEG-ACVIIDEGHNIEDVCREGASAEFSLQAVGEA 403
Query: 256 LEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDIL 315
++ ++NL +N E + A++ R + + D + +N A + I
Sbjct: 404 MDALSKNLGHVNVETN---------MLADFFRSISAF-------LEDMFRTNRAESTIIQ 447
Query: 316 KEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFC 375
VP +Q + R + AH D TL
Sbjct: 448 SNQVPS--------------FLQEMLSRFD----------------AAH---DMATLS-- 472
Query: 376 YERLHSLMLTLEITDTDEFL-HIQTICDFA---TLVGTYTRGFSIIIE-PFDERMPHIPD 430
E ++ LM T T HI D A T+ T +++I D P
Sbjct: 473 -ETVNDLMTTKAKHLTPIVAPHISLAGDLASIVTMASTQPEAYNVIFGMKVDINSDSCPG 531
Query: 431 PVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
++Q C S+A V + +SV++TSGTLSP + F + F + +
Sbjct: 532 VIIQ--CMKPSVAFNSVAKKARSVILTSGTLSP------MTTFEAELGVRFGAKIEAPHV 583
Query: 491 CP-----MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYM 545
P + +T ++ + A+N G L+ I+P G++ FF YS +
Sbjct: 584 VPNENVYVEVTGALGEITYKATESENAGRRFAQNLGNYLLRYAKIIPGGMLVFFPKYSLI 643
Query: 546 DEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVA 605
+ ++ W+ SG+ ++ HK + ET+ L+ + + + G++ +V RGKV+
Sbjct: 644 ERVVREWHMSGLFGQLNDHKFLCCETRGAKGFQETLNQFDRG-NTRSGSLMLAVYRGKVS 702
Query: 606 EGIDFDRHYGRLVIMFGVPF 625
EGIDF R V G+PF
Sbjct: 703 EGIDFKDDKARAVFCVGIPF 722
>gi|159128055|gb|EDP53170.1| DNA helicase, putative [Aspergillus fumigatus A1163]
Length = 782
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 139/617 (22%), Positives = 251/617 (40%), Gaps = 124/617 (20%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLH------------NYQTRHLGPAAKILAIGLSSR 112
++ VK+ YC+RT ++ + +EL+ + + T + K L +G SR
Sbjct: 117 DDDVKIFYCSRTHSQLSQFSSELRRVKMPSSMPAELSTSDANTDDVQERVKHLTLG--SR 174
Query: 113 KNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNI---ETCEFFENYEKAASAAV 169
KNLC+N +V++ N +++ C L + P I + C + + E +
Sbjct: 175 KNLCINPKVMSLGNAAAINERC----------LELQQPGIAAEKRCPYLPSKED--EGQI 222
Query: 170 LPPGVYTL------QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISK 223
L +TL +D+ GK+ G CPY+ +R +++ + V+ Q ++ ++ +
Sbjct: 223 LQFRDHTLATIKDIEDMGKLGKRMGICPYYASRSVLKHSENVLLKAQKIVTLPYPLLLQR 282
Query: 224 EMQ-------KESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKAT 276
+ K VV+ DEAHN+ + SV++R L+ A L ++ + KA
Sbjct: 283 SARDALDLSIKNHVVIIDEAHNLMDAICNIHSVTIRLSQLQTA---LLQLTTYAHKHKAR 339
Query: 277 DAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRL 336
G+ R+ ++ + RL
Sbjct: 340 LKGKNRS---------------------------------------------YIAQIIRL 354
Query: 337 VQYLRGRLET---ENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDE 393
V +R L + +N+ EG V + + A G+DQ L L ++ E
Sbjct: 355 VSSIRDHLRSILGQNLPAEGTVD-PSDLMAGKGVDQINPYKLSRYLQESKLARKVDGYVE 413
Query: 394 FL---HIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHD----------A 440
FL + Q+ ++ V + F + + P L CHD
Sbjct: 414 FLKNKNQQSDDKPSSPVLFLVQSFLLSL-----MNPSAEGRFFYLKCHDDIQLRYMLLDP 468
Query: 441 SLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR----SFKMSLTRDCICPMVLT 496
+ + + + ++V++ GT+SP+ Y L + SR S+ + + + L
Sbjct: 469 TNQFREIVEDARAVILAGGTMSPMSDYRNHLFSYIAPSRLDTFSYGHVIPPENLIAHTLV 528
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW---- 552
G +D R + + G+ + + +PDG+V FF SY Y+ I+A W
Sbjct: 529 NGVLGSEFDFTYDSRDSEKMILDLGRTVATLCQAIPDGVVAFFPSYDYLSRIVAIWRKPL 588
Query: 553 -NDSG--ILKEIMQHKLVFIETQDV-VETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ G IL I + K + E +D+ +T L Y + D G+GA+ SV GK++EGI
Sbjct: 589 EGEKGETILSLIEREKSILYEGRDMGPKTDDLLQEYTRTIDSGQGALLLSVVGGKLSEGI 648
Query: 609 DFDRHYGRLVIMFGVPF 625
+F GR V++ G+PF
Sbjct: 649 NFSDKLGRGVLIIGLPF 665
>gi|395743927|ref|XP_002822926.2| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11, partial
[Pongo abelii]
Length = 636
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 128/490 (26%), Positives = 198/490 (40%), Gaps = 61/490 (12%)
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
V ++ L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+
Sbjct: 64 VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVII 122
Query: 234 DEAHNIDNVCIEALSVSVR-RQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGL 292
DEAHN+ + SV V Q + ++ L + + +R KA + L+ L + +
Sbjct: 123 DEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYMERYGKRLKAKNLMYLKQILYLLEKFV 182
Query: 293 A-LRGNLPIADAWLSNPALPS------------DILKEAVPGNIRRAEHFLHVLRRLVQY 339
A L GN+ NP S D L ++ NI + V R +
Sbjct: 183 AVLGGNIK------QNPNTQSLSQTGTELKTINDFLFQSQIDNI----NLFKVQRYCEKS 232
Query: 340 LRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDE------ 393
+ R E+ G V AG Q + L M DE
Sbjct: 233 MISRKLFGFTERYGAVLSSREQPKLAGFQQ-----FLQSLQPRMTEALAAPADESQASAP 287
Query: 394 -----FLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVF 448
+HI+ A L G I+ R + L+ + ++ V
Sbjct: 288 RPASPLMHIEGF--LAALTAANQDGRVIL-----SRQGSLSQSTLKFLLLNPAVHFAQVV 340
Query: 449 DRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSDQL 502
++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 341 KECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGISNQ 400
Query: 503 PVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM 562
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L +
Sbjct: 401 PLEFTFQKRELPQMMDEAGRILCNLCGVVPGGVVCFFSSYEYLRQVHAHWEKGGLLGRLA 460
Query: 563 QHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRHYG 615
K +F E + + L Y + CG+ GA+ SV GK++EGI+F + G
Sbjct: 461 ARKKIFQEPKSAHQVEQVLVAYSRCIQACGQERGRVTGALLLSVVGGKMSEGINFSDNLG 520
Query: 616 RLVIMFGVPF 625
R V+M G+PF
Sbjct: 521 RCVVMVGMPF 530
>gi|401827400|ref|XP_003887792.1| Rad3-like DNA helicase [Encephalitozoon hellem ATCC 50504]
gi|392998799|gb|AFM98811.1| Rad3-like DNA helicase [Encephalitozoon hellem ATCC 50504]
Length = 618
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 143/633 (22%), Positives = 260/633 (41%), Gaps = 131/633 (20%)
Query: 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVK------- 69
+Y Q ++ + +R ++ G + PTGTGKT++LL+ + Y+ P
Sbjct: 5 LYEGQKQFIRDARRVVEDGGVGIFSSPTGTGKTMSLLNAVMDYIGGDGAEPGSRSKALEQ 64
Query: 70 ---------LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ YCTRT ++ + + ELK L + A+ L SR+ C+N +
Sbjct: 65 TLFQGSAGTVFYCTRTHTQLSQAVNELKRL----------GVRCNAVILGSRRVYCLNEK 114
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
VL +N D+++ CR+ + C F++ S G+ ++D
Sbjct: 115 VLQHKNSDAMNEGCRQIVREGL------------CAFYD-----GSDLFDGHGILDVEDF 157
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ-KESVVVFDEAHNI 239
G++Q CPY+ ++ ++V YQ L + G S ++ + S+V+ DEAHNI
Sbjct: 158 GLIGREQKLCPYYASKRYSHRCDIVFLPYQLLFTRE--GRKSADIDVRGSIVIVDEAHNI 215
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
+ I+ + SV T +SR + +E + R Y++ +G
Sbjct: 216 CDSVIQMNTSSVLFVT-------ISRYVKAMELY--------RERYSKRAKG-------- 252
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
D L E + VLRR+ + G L +V +E V V+
Sbjct: 253 --DGKL---------------------ERVMEVLRRIEGF--GALHCRSVGEEERVVGVS 287
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLT--LEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
GI+ + + + S ++ LE D L + I F +L+ R I
Sbjct: 288 EFLLKTGIEDFNMLEIEDYIASSGISRKLEGLGRDLNLQLPEISKFLSLLTMSDRSGRIF 347
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
R+ P DAS+ + V + +S+++ GT+ P+D V+
Sbjct: 348 YTS--RRIKFTP--------LDASMYFEDVLE-CRSLLLAGGTMEPVD------QLASVL 390
Query: 478 SRSFKMSLTRDCIC----PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
+R M + +C P+V+ G V ++ R ++ ++ + V D
Sbjct: 391 ARRNPMYFSYKSVCNDFLPIVVPSGPSGREVVVNYETRESLESVKDVASSILNFSNAVRD 450
Query: 534 -GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR 592
G+VCF S +Y+ + D I + ++++ + D E A + + AC
Sbjct: 451 GGMVCFLPSKAYLKILREACGD-----RIGRKRVLYEDLTDFQE--YASEVKKGAC---- 499
Query: 593 GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ F+V GK++EGI+F + RL+++ GVP+
Sbjct: 500 --ILFAVMGGKLSEGINFSDNLCRLLMVVGVPY 530
>gi|396081915|gb|AFN83529.1| Rad3-like ATP dependent DNA binding helicase [Encephalitozoon
romaleae SJ-2008]
Length = 617
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 141/628 (22%), Positives = 264/628 (42%), Gaps = 121/628 (19%)
Query: 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY-------------VLSK 63
+Y Q ++ + K+ +D + + PTGTGKT++LLS + Y VL +
Sbjct: 6 LYEGQKQFIKDAKKIVDGEAVGIFSSPTGTGKTMSLLSAVVDYIDVDGVELNHRNRVLEQ 65
Query: 64 P---ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
N + YCTRT ++ + + ELK L + A+ L SRK C+N +
Sbjct: 66 ALFQRNGGTVFYCTRTHTQLAQAINELKRLD----------VRCNAVVLGSRKIYCLNEK 115
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
+L +N D+++ C++ + C F++ E VL ++DL
Sbjct: 116 ILQYKNSDAMNEGCKQIVKEGL------------CAFYDGGELFDGCGVLD-----VEDL 158
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
GK+Q CPY+ ++ ++V YQ L + + ++ + S+V+ DEAHNI
Sbjct: 159 TLIGKEQRLCPYYASKIYSHQCDIVFLPYQLLFTREGRRSVDIDV-RGSIVIVDEAHNIC 217
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
+ I+ + ++ T +S+ + +E +K + R+R
Sbjct: 218 DSVIQMNTSTILFMT-------ISKYIKAMEMYKERYSERVR------------------ 252
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L E L VLRR+ + G + N+ +E V V+
Sbjct: 253 RDGVL---------------------ERILEVLRRIEAF--GLMHCRNMNEEEGVMGVSE 289
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLT--LEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
I+ + + + S ++ LE + D L + I F +L+ +G I
Sbjct: 290 FLLKTSIEDFNMLEIEDYIASSGISRKLEGFEKDLNLQLSEISKFLSLLTMSDKGGRIFY 349
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
+R+ P DA++ + V + +S++ GT+ PID +L
Sbjct: 350 TS--KRIKFTP--------LDATMYFEDVLE-CKSLLFAGGTMEPIDQLASVLGKRSPQY 398
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD-GIVC 537
S++ S+ RD + P+V+ G V ++ R ++ ++ + V D G+VC
Sbjct: 399 FSYR-SVCRDFL-PIVVGSGPSGREVVVNYETRESTESVKDVASSILNFSNAVRDGGMVC 456
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
F S +Y+ + D I + K ++ + + E L + ++AC + F
Sbjct: 457 FLPSKAYLKILREVCGDM-----IGRKKALYEDLTNFQEYVLEVK--KEAC------ILF 503
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+V G+++EG++F+ RL+++ GVP+
Sbjct: 504 AVMGGRLSEGMNFNDKLCRLLMVVGVPY 531
>gi|297850492|ref|XP_002893127.1| hypothetical protein ARALYDRAFT_889526 [Arabidopsis lyrata subsp.
lyrata]
gi|297338969|gb|EFH69386.1| hypothetical protein ARALYDRAFT_889526 [Arabidopsis lyrata subsp.
lyrata]
Length = 1171
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 166/728 (22%), Positives = 270/728 (37%), Gaps = 178/728 (24%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDA---KGHC--LLEMPTGTGKTIALLSLI 56
++++ + V FPY Y Q ++M + LD GHC LLE PTGTGK+++LL +
Sbjct: 26 VYQIGGLQVEFPY-QPYGTQLAFMSRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSV 84
Query: 57 ----------------------------------------------TSYVLSKPENPVK- 69
S + K E K
Sbjct: 85 LAWQQNYKSRLLKGNLSHSKAAPEAATDPLNHGGGFIPETQPSDTPASTNVEKAETATKK 144
Query: 70 ------LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLA 123
+ Y +RT ++ + + E + +T + P A L+SRK+ C N VL
Sbjct: 145 RTKIPTIYYASRTHSQITQVIREYR-----KTGYRVPMAV-----LASRKHYCTNRHVLG 194
Query: 124 AENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP----GVYTLQD 179
+N D W N K S L P V+ ++D
Sbjct: 195 KDNVDD----------EW------------------NVNKITSHPSLQPRGHNEVHDIED 226
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L GK CPYF + M + A +V Y Y+++P + + ++ K ++++FDEA +
Sbjct: 227 LVKVGKNVRGCPYFASWSMAENAQLVFCPYSYIVNPVIRAGVEVDL-KGAIIIFDEAQFL 285
Query: 240 DNVCIEALSVSVRRQT----LEGATRNLSRINQEIERFKATD----------AGRLRAEY 285
+ + + S + T +E R ++ E+E+ L +
Sbjct: 286 SMLVMLMIRPSTKSFTVHSNMEDIAREAGKLQNELEQMSLAQPMIYQPLCEVVEGLISWI 345
Query: 286 NRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLE 345
R + LA R +W + AL +E NI R E F +L + +R E
Sbjct: 346 GRKKDSLAKRDFQHYFSSWTGDKAL-----RELEESNITR-ECFPILLECFTKAIRTSKE 399
Query: 346 TENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFAT 405
E +S ++ +T T F H L D L +Q
Sbjct: 400 AEMESDMLYLSGISVLTLEELFSSLTYFFSRNGSHIL---------DYQLGLQRSTKRGD 450
Query: 406 LVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID 465
T+T FS L C + ++ K + D S+++TSGTLSP++
Sbjct: 451 PSRTWTHTFS-------------------LWCMNPAVVFKDLADISLSIILTSGTLSPMN 491
Query: 466 LYPRLLNFHPVVSRSFKMSLTRDC-ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLL 524
+ L S + + + ++ G P++ + GK L
Sbjct: 492 SFSSELGMQFGTSLEAPHVIDPNMQVWAGAISNGPSNYPLNASYKTADTYSFQDALGKSL 551
Query: 525 VEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE----TQDVVETTLA 580
E+ +IVP G + FF SY M+++ W ++G + K +F+E QD ++ L
Sbjct: 552 EEICTIVPGGSLIFFPSYKLMEKLCTRWRETGQWSRLCLKKDLFVEPRGGAQDEFDSVLK 611
Query: 581 ------------LDNYRKACDCG-----------RGAVFFSVARGKVAEGIDFDRHYGRL 617
+ R+A G +GA F +V RGKV+EGIDF R
Sbjct: 612 GYYDSIRGKNKLVGRNRRAKKAGPIKTETQDDSKKGAAFLAVCRGKVSEGIDFADDNARA 671
Query: 618 VIMFGVPF 625
VI+ G+PF
Sbjct: 672 VIIVGIPF 679
>gi|431892148|gb|ELK02595.1| Putative ATP-dependent RNA helicase DDX11-like protein [Pteropus
alecto]
Length = 857
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 140/587 (23%), Positives = 236/587 (40%), Gaps = 104/587 (17%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G +++++G SR+NLCVN V +
Sbjct: 240 TKIYYCSRTHSQL------TQFVHEVQKSPFGKDTRLVSLG--SRQNLCVNEDVKNLGSV 291
Query: 128 DSVDAAC----RKRTASWVRALAAENPNIE-----TCEFFENYEKAA--SAAVLPPGVYT 176
++ C R + S RA E C F+ NY++ VL V
Sbjct: 292 QLINDRCMEMQRSKHESKSRAEDKEPKRRRQEPRGACPFY-NYKQLQLLRDEVLVE-VKD 349
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
++ L GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEA
Sbjct: 350 IEQLVTLGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRLQGQ-VVIIDEA 408
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRG 296
HN+ + S V L A S++ Q +ER++ RL+A
Sbjct: 409 HNLIDTITSIHSAEVSGSQLCQAH---SQLLQYMERYRK----RLKAR------------ 449
Query: 297 NLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVS 356
N+ L+VL + V L G + K+ P +
Sbjct: 450 -------------------------NLMYIRQILYVLEKFVTVLGGNI------KQNPNT 478
Query: 357 FVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFA----TLVGTYTR 412
S T G + KT+ + + +I + + F +Q C+ + L G +T
Sbjct: 479 QSLSQT---GTELKTI-------NDFLFQSQIDNINLF-KVQRYCEKSMVSRKLFG-FTE 526
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
+ ++ P E+ P + L +A P + + SP+ L
Sbjct: 527 RYGAVLAPRKEQ-PKLAGFQHFLQSLQPGVAEAPAAPMEEEATVPRPA-SPLMHIEGFLA 584
Query: 473 FHPVVSRSFKMSLTR-------DCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLV 525
++ ++ L+R D I P+++ G + + R P + G++L
Sbjct: 585 ALTTANKDGRVILSRQGHVIPPDNILPLIICSGPSNQQLEFTYLKRELPQMMDEIGRILC 644
Query: 526 EMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYR 585
+ ++VP G+VCFF SY Y ++ A W+ SG+L + K +F E + + L Y
Sbjct: 645 NLCNVVPGGVVCFFPSYEYQRQVHAHWDKSGLLARLAVRKKIFQEPKRANQVEQVLMEYS 704
Query: 586 KACDCG-------RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ C GA+ SV GK++EGI+F GR V+M G+P+
Sbjct: 705 RCIKCCAQVGGMVTGALLLSVVGGKMSEGINFSDDLGRCVVMVGMPY 751
>gi|297609925|ref|NP_001063870.2| Os09g0551800 [Oryza sativa Japonica Group]
gi|255679120|dbj|BAF25784.2| Os09g0551800 [Oryza sativa Japonica Group]
Length = 1187
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 156/713 (21%), Positives = 286/713 (40%), Gaps = 167/713 (23%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALD-----AKGHCLLEMPTGTGKTIALLSLI 56
++++ V V FPY Y Q ++M + LD + H LLE PTGTGK+++LL
Sbjct: 24 VYQVGGVPVEFPY-KPYGTQLAFMGRVIATLDRARRQGRSHALLESPTGTGKSLSLLCSA 82
Query: 57 TSYVLSKP--------------------------------------ENPVKLIYCTRTVH 78
++ P +N + Y TRT
Sbjct: 83 LAWQRHYPLRAPPAAAPDPFLHGGGFVPDDTQKQATPGVPEKATRKKNVPTIYYATRTHA 142
Query: 79 EMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRT 138
++ + + E + +Y+ R +AI L+SRK+ CVN V + N +D C+
Sbjct: 143 QITQVVREYRKT-SYRVR--------MAI-LASRKHYCVNKNVCMSGN---IDELCK--- 186
Query: 139 ASWVRALAAENPNIETCEFFENYEKAASAAVLPPG----VYTLQDLRAFGKQQGWCPYFL 194
+ + + + C ++N +K + L G V+ ++DL G++ CPYF
Sbjct: 187 -------SLLDDSAQGCPEYKNAQKLSRHPSLQIGGCYEVHDIEDLVRVGRKVKGCPYFA 239
Query: 195 ARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQ 254
A+ M + A +V Y YL+ P V + ++ + S++V DEAHNI+++ +A S V +
Sbjct: 240 AQTMAEAAQLVFCPYNYLISPIVRRAMDIDI-RGSIIVLDEAHNIEDIARDAGSFDVDEE 298
Query: 255 TLEGATRNLSRINQEIERFKATDA-GRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSD 313
+ L + QE+E +A ++ + +++GL + W+
Sbjct: 299 S-------LLFLRQELEGLVTDEAVAKIYEPLHEVIQGL---------NGWIDE------ 336
Query: 314 ILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG--PVSF-----VASITAHAG 366
GN + F H + G + ++ G PV+F A+ A
Sbjct: 337 ------QGNNLQKNEFEHP----ASFWTGEEAMKELKYAGITPVNFPVLQECATKAIKAA 386
Query: 367 IDQKTLRFCYERLH---SLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDE 423
D ++ E +H +TLE ++ F G ++ + + ++ F +
Sbjct: 387 SDAES-----EGVHLSGGSAMTLESL-------FSSLSYFFAENGRHSNDYQLALQRFAK 434
Query: 424 RMPHIPDP------VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
R + V+ L C + ++ + + D SV++TSGTLSP+ + L
Sbjct: 435 REGNSVTSFIGWKCVMSLWCLNPAVVFRDIADLTLSVILTSGTLSPMGSFASELGVQFEA 494
Query: 478 SRSFKMSLTRDC-ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIV 536
+ D + VL+ G ++ + ++ G L E+ +VP G +
Sbjct: 495 CMEAPHVINADSQVFATVLSSGPTGRRLNASYRTANEYSFQDELGATLEEICRVVPGGAL 554
Query: 537 CFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE-------------------------- 570
FF SY+ ++++ W+ +G + K V +E
Sbjct: 555 VFFPSYNLLEKLQRRWSQTGQWARLEAQKHVCVEPRGSTEELEPVLKGYYNAILGKAPPK 614
Query: 571 -----TQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLV 618
+ +V+ + D+ +++ GA F +V RGKV+EGIDF R+V
Sbjct: 615 KGRGGAKQIVKNRVTKDSSQESAK--GGAAFLAVCRGKVSEGIDFSDDKARVV 665
>gi|282848158|ref|NP_001164296.1| DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 [Xenopus (Silurana)
tropicalis]
gi|197246717|gb|AAI68601.1| Unknown (protein for MGC:185780) [Xenopus (Silurana) tropicalis]
Length = 895
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 147/598 (24%), Positives = 253/598 (42%), Gaps = 62/598 (10%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G +++++G SR+N+CVN V N
Sbjct: 211 TKIYYCSRTHSQLSQ------FVHEVQKSPFGKQTRLVSLG--SRQNMCVNDDVRRLGNV 262
Query: 128 DSVDAAC--------RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
++ C K+ R E+ C F+ + V ++
Sbjct: 263 QLINDRCMEMQRNKHEKKNKEPERKKRQESR--AACPFYSYEQMQFLRDETLVEVKDIEQ 320
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP---KVAGIISKEMQKESVVVFDEA 236
L + ++ CPY+ +R+ + A VVV YQ LL K +GI K+ VV+ DEA
Sbjct: 321 LVSLAREVKACPYYSSRYAIPTAQVVVLPYQMLLHESSRKASGI----KLKDQVVIIDEA 376
Query: 237 HN-IDNV-CIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRA-----EYNRLV 289
HN ID + C+ + VS Q + ++ + +++ R KA + ++ E V
Sbjct: 377 HNLIDTITCMYSSQVS-GAQLCQAHSQLMQYMDRYRSRLKAKNLMYVKQLVFLLEKFVQV 435
Query: 290 EGLALRGNLPIADAWLSNPALPS--DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETE 347
G ++ N L S D L + NI + + R + + R +
Sbjct: 436 MGGNVKQNPSFQKVAQDGTTLKSINDFLFHSQIDNI----NLFKIQRYCTKSMISRKLSG 491
Query: 348 NVEK-EGPVSFVASITAH-AGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFAT 405
VEK +G + +A+ + AG+ Q + H++ + E ++T
Sbjct: 492 FVEKFKGTETCLANKESQKAGLQQFLQDLSQKSRHTVGAPEGALEDAENGQLRTASPLMQ 551
Query: 406 LVGTYTRGFSIIIEPFDER-MPHIPDPVLQLSCH----DASLAVKPVFDRFQSVVITSGT 460
+ G + ++ D R + H+ V Q S + ++ V +SV+I GT
Sbjct: 552 IEGFLS---ALTNANQDGRVILHMQGTVAQSSLKFLMLNPAVHFAEVLKECRSVIIAGGT 608
Query: 461 LSPI-DLYPRLL---NFHP--VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDP 514
+ P+ D +LL P + S + + I P+VL G + + R P
Sbjct: 609 MQPVSDFKQQLLISAGLSPERITEFSCGHVIPAENILPIVLCSGPTNQQLEFTYQKRDLP 668
Query: 515 GVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE---- 570
+ G++L + + VP G+VCFF SY Y I W SG+LK + K +F E
Sbjct: 669 EMMDETGRILTNLCNFVPGGLVCFFPSYEYQKRIQEHWEKSGLLKRLALKKKIFQEPKRA 728
Query: 571 ---TQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Q +VE + + N ++ GA+ FSV GK++EGI+F GR ++M G+P+
Sbjct: 729 NQVDQVLVEYSKCIKNCSQSGGAQNGALLFSVVGGKMSEGINFSDDLGRCIVMVGMPY 786
>gi|358390776|gb|EHK40181.1| hypothetical protein TRIATDRAFT_296192 [Trichoderma atroviride IMI
206040]
Length = 871
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 140/598 (23%), Positives = 248/598 (41%), Gaps = 88/598 (14%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELK--LLHNYQTRHLGPAAKILA------IGLSSRKNLC 116
E +K+ Y +RT ++ + + EL+ + + + + I + + LSSR+ LC
Sbjct: 201 EEKIKIYYTSRTHSQLSQFITELRRPVFPSSLPTSVAKGSDIPSTEPVKLLPLSSRQKLC 260
Query: 117 VNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT 176
+N V + +++ C + + + P E + + ++ A LP
Sbjct: 261 INPSVARLGSVQAINDRCTELQQARSSTKCSFAPKEELLSQTHQF-RDSTLATLP----D 315
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
++DL GK CPY+ +R ++ A ++ Y LL + +++ +VV+ DEA
Sbjct: 316 IEDLHQLGKSLSVCPYYASRGVLPGAEIITLPYPLLLQQSAREALGIKLEG-NVVIIDEA 374
Query: 237 HNI----DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGL 292
HNI NV L +S R+ + + R ++++ + GR+ R+++GL
Sbjct: 375 HNILDAISNVHAAELQLSDLRRGRQMLGVYVKRFGKKLKGINRVNVGRV----GRVIDGL 430
Query: 293 A--LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVE 350
L G L + D P+D+ + I E L+QY++ +E
Sbjct: 431 TEWLEGALKLKDE--HGIVDPNDLTRHKGIDQINVYE--------LIQYIQESKLAYKIE 480
Query: 351 KEGPVSFVASI-TAHAGIDQKTLRFCYERLHSLMLTL----EITDTDEFLHIQTICDFAT 405
S+VA + G L+ LH+L+ L ++ + +T A
Sbjct: 481 -----SYVAHVENDEEGKKSGPLKAGSPVLHALVSFLIALTNLSSEGRIFYQKTHGAAAD 535
Query: 406 LVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID 465
+ TY +++ P + A + ++V++ GT+SP
Sbjct: 536 VKLTY-----LLLSP--------------------THAFSSIVSSARAVILAGGTMSPFQ 570
Query: 466 -----LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGS-DQLPVSTKFDMRSDPGVARN 519
L+P L+ V S S + R+ +C L P F R + +
Sbjct: 571 DYKDQLFP-TLDSTKVTSLSCGHVIPRENLCVWTLASSHPGSPPFEFSFKQRGNRDMMNQ 629
Query: 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW------NDSGILKEIMQHKLVFIETQD 573
G ++ + +IVPDG+V FF SYSY+DEII W N I + K+V+ +T+
Sbjct: 630 LGLSILNVCNIVPDGVVVFFPSYSYLDEIIKIWQQPQSGNSHPIWDRLQLRKMVYRDTKG 689
Query: 574 VVETTLALD------NYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ D R A D GA+ SV GK++EGI+F GR VI+ G+P+
Sbjct: 690 ESSDDVLRDYSQMILGARAAGDTRTGALLLSVVGGKMSEGINFSDRLGRCVIVIGLPY 747
>gi|430812749|emb|CCJ29870.1| unnamed protein product [Pneumocystis jirovecii]
Length = 850
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 127/589 (21%), Positives = 245/589 (41%), Gaps = 77/589 (13%)
Query: 64 PENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLA 123
PE +K+IY +RT ++ + + EL+ + T + I L+SRKNLC+N V
Sbjct: 191 PE-ELKIIYASRTHSQLTQFINELRRVSFPSTFQDNTVQPVRHIALASRKNLCINPNVSK 249
Query: 124 AENRDSVDAAC----RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
N + ++ C + T R + F ++ A + ++D
Sbjct: 250 LSNINLINEKCIELQKHNTIPEGRCRYLPKDDKTKIHNFRDHALA--------NIRDIED 301
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L G++ CPY+ +R ++ A ++ Y LL ++ + K ++V+ DEAHN+
Sbjct: 302 LVILGQKLDICPYYSSRTALKLAEIITLPYPLLLQASARETLNLSL-KNNIVIIDEAHNL 360
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
+ S ++ T + +++IN + +F G+ ++++ L N
Sbjct: 361 IDTITSIYSSTI---TFSQVSLAMNQINIYLSKFNKKLKGKNLVYIKQIIKLLKNISNFM 417
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
K + G+I+ + + G + N+ K +
Sbjct: 418 EC--------------KNNIIGDIQVEQSEI--------LFYGGGDQVNIYK------LE 449
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFL------HIQTICDFATLVGTYTRG 413
++G+ +K + ++ +L T T+ + L HIQT L +T G
Sbjct: 450 KYMKNSGLARKVDEYFEKKSKNLDQTKTNTEKNIILGLPILSHIQTF--LLNLTNPFTEG 507
Query: 414 --FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID-----L 466
F IE D L+ + K + + ++V++ GT+ P+D L
Sbjct: 508 KIFFGHIEKAQINGKTNTDCYLKYLLLNPCYQFKEIVNEARAVILAGGTMEPMDDFIYQL 567
Query: 467 YPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVE 526
+P L + S ++ D +C ++++ G + ++ R++ + G L+
Sbjct: 568 FPYLQK-EKIHRFSCGHIISPDHLCAIIVSTGPTRKEFIFNYEKRNNDDILNELGSALIN 626
Query: 527 MVSIVPDGIVCFFVSYSYMDEIIATWN-----DSGILKEIMQHKLVFIETQDVVETTLAL 581
+ ++PDG++CFF SY Y++EI+ W+ I + + Q K + +++ L
Sbjct: 627 LCRVIPDGVICFFPSYDYLEEIVKKWHIKQGTKLSIWERLEQKKKFSTDIENM------L 680
Query: 582 DNYRKACDCG-----RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
NY + GA+ SV GK++EGI+F GR VI+ G+PF
Sbjct: 681 QNYSNTINSSNTSHYNGALLLSVIGGKLSEGINFSDKLGRGVIIVGLPF 729
>gi|307191862|gb|EFN75286.1| Probable ATP-dependent RNA helicase DDX11 [Harpegnathos saltator]
Length = 862
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 133/604 (22%), Positives = 262/604 (43%), Gaps = 84/604 (13%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK-ILAIGLSSRKNLCVNSRVLAAENR 127
K+ +C+RT ++ + + EL+ P ++ I + LSSR+N C+N V ++
Sbjct: 198 KIFFCSRTHSQLTQFVHELQR---------SPYSQDISVVPLSSRQNYCINKNVKKLKHV 248
Query: 128 DSVDAAC----RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAF 183
++ C RK+T ++ C F +K A VL + ++++
Sbjct: 249 SLINETCLQLQRKKTTVKKEKDLKKSKTASGCPFIPGDQKLLMAEVLT-NIQDIEEIVQK 307
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G++ CPY+ +R VQ +++ Y +L + ++ KESV++ DEAHN+ +
Sbjct: 308 GQENNTCPYYGSRKSVQNGQLILVPYNSILHRNTRISLGIDL-KESVLIIDEAHNLLDA- 365
Query: 244 IEALSVSVRRQTLEGATRNL----SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
IE + SV + G RNL S+++Q ++F++ + + N+L L+ L
Sbjct: 366 IEGMYSSV----ITG--RNLLHCYSQLSQYQKKFESLFSAKSVLFLNQL--SFCLKKFLI 417
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHF--------LHVLR--------RLVQYLRGR 343
+ A ++ + P+D + + + + + E F +++ + +LV L+G
Sbjct: 418 LFGATIN--SHPNDEVNKTIVPKLYKLEEFELLTEIDTVNIFKLLEFVKASKLVHKLQGF 475
Query: 344 LET---------ENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEF 394
+E + V K G F+ SI + Q+ S+ +
Sbjct: 476 VEQYGNNVKIGEQKVMKSGITEFLNSIKNKDALSQEA--------SSVADAPNNNEEPMS 527
Query: 395 LHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSV 454
+ I F + + I + P I +++ + + + + +SV
Sbjct: 528 NPLMAILSFLESLKSSCLDGRIYVLP----SATIGQGIIKFLLLNPAAHFHDIVEDARSV 583
Query: 455 VITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM------VLTRGSDQLPVSTKF 508
V+ GT+ P+ + L + M+ + D + P V+ RG + F
Sbjct: 584 VLAGGTMEPMSEFIDQLFLMAGATIDRIMTFSCDHVIPKENIISNVVMRGPTGIEFEFSF 643
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
R D + G+ L+ + +IVP G++ FF SY + D + + SG++ +I K ++
Sbjct: 644 HNRQDTKLLDELGRTLINLCNIVPAGVIVFFPSYKFEDTVFKHLSKSGVISKISAKKCIY 703
Query: 569 IETQDVVETTLALDNY-------RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
E + + ++ LD Y + C+ G++ FSV GK++EG++F GR VI+
Sbjct: 704 REPKLASQVSVILDQYAHSIKNPQSPCN---GSLLFSVVGGKLSEGLNFSDDLGRCVIVV 760
Query: 622 GVPF 625
G+P+
Sbjct: 761 GLPY 764
>gi|432863481|ref|XP_004070088.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Oryzias latipes]
Length = 859
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 144/617 (23%), Positives = 251/617 (40%), Gaps = 98/617 (15%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK-ILAIGLSSRKNLCVNSRVLAAEN 126
K+ YC+RT ++ + +H Q P +K I + L SR+NLC+N V +
Sbjct: 208 TKIYYCSRTHSQL------AQFVHEVQK---SPFSKDISLVTLGSRQNLCINEEVRRLGS 258
Query: 127 RDSVDAAC---RKRTASWVR----ALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
++ C +K R A P C F + + VY ++
Sbjct: 259 IQRINDRCMEMQKNKHEKQRPEDGAKRKRGPAKSVCPFNKASALQQMRDEVLGTVYDIEQ 318
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP---KVAGIISKEMQKESVVVFDEA 236
L GK CPY+ R + A +VV YQ +L + AG+ K VV+ DEA
Sbjct: 319 LIKVGKDIHSCPYYATRLAIPPAKLVVLPYQMVLHEATRRAAGV----QLKGQVVIIDEA 374
Query: 237 HNIDNV--CIEALSVSVRRQTLEGAT--RNLSRINQEIERFKATDAGRLRAE-------- 284
HN+ + CI + L G+ R S++ Q +R+K+ RL+A+
Sbjct: 375 HNLSDTLSCIHS-------SELNGSQLCRAYSQLTQYADRYKS----RLKAKNLMYIKQI 423
Query: 285 ---YNRLVEGLALR-GNLPIADAWLSNPALPS--DILKEAVPGNIR--RAEHFLH---VL 333
RLV L + G P + + + + + L +A NI + + + +
Sbjct: 424 LFAIERLVRVLGGKVGQNPQSQNTQAGTEMHTINNFLFKAEIDNINWFKLQRYFEKSMIS 483
Query: 334 RRLVQYL------------RGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHS 381
R+L ++ + L EN EG ++++ ++ K+ + L
Sbjct: 484 RKLSGFVEKYAGSGVTLHTQNTLNKENRRTEGLLNYLKTL--------KSNQNSASDLQE 535
Query: 382 LMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDAS 441
++ + I+ F L + T G ++ R + + ++ + +
Sbjct: 536 SAEAEKVLSASPMMQIEGF--FMALTNSNTDGRVLV-----HRQGTLSESSIKFLLLNPA 588
Query: 442 LAVKPVFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVL 495
+ V +SV+I GT+ P+ D LL +V + + + I P+V+
Sbjct: 589 VHFAEVLKECRSVIIAGGTMQPVSDFKEELLLSAGVGQERIVEFACGHVIPPENILPIVM 648
Query: 496 TRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS 555
G + F R P + G++L + ++VP G+VCFF SY Y+ I+ W S
Sbjct: 649 CSGPSGQELDFTFQSRDLPCMMDETGRILSNICNVVPGGVVCFFPSYEYLRRIMCHWEAS 708
Query: 556 GILKEIMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGI 608
G L + K +F E + + L + + C + GA+ FSV GK++EGI
Sbjct: 709 GALTRLSNKKKIFQEPKKPNQVEHVLSEFSRCIQRCAQESSGLTGALLFSVVGGKMSEGI 768
Query: 609 DFDRHYGRLVIMFGVPF 625
+F GR V+M G+P+
Sbjct: 769 NFSDDLGRCVVMVGMPY 785
>gi|332258882|ref|XP_003278520.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Nomascus leucogenys]
Length = 1248
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 153/617 (24%), Positives = 250/617 (40%), Gaps = 69/617 (11%)
Query: 36 GHC-LLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ 94
GHC T G + L+ I K + P K+ + TRT ++ + EL+ +
Sbjct: 212 GHCSRCCCSTKQGNSQESLNTIKKDHTGKSKIP-KIYFGTRTHKQIAQITRELR-----R 265
Query: 95 TRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIET 154
T + G IL SSR + CV+ V+ NR+ R + N ++
Sbjct: 266 TAYSGVPMTIL----SSRDHTCVHPEVVGNFNRNEKCMELR------------DGKNGKS 309
Query: 155 CEFFENYEKAASAAVLPP-----GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
C F+ K + L + +++L + GK+ CPY+ AR ++Q A+++ Y
Sbjct: 310 CYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCPY 369
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL-SRINQ 268
YLLD ++ + + KE VV+ DEAHNI++ E+ S SV L A L S +N
Sbjct: 370 NYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNN 428
Query: 269 EIERFKATDAGRLRAEYNRLV-------EGLALRGNLPIADAWLSNPALPS----DILKE 317
I + D LRA L+ E L R W N L + I
Sbjct: 429 NIRK---KDHEPLRAVCYSLINWLEANSEYLVERDYESACKIWSGNEMLLNLHKMGITTA 485
Query: 318 AVPGNIRRAEHFLHVLRR--LVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFC 375
P I + HF VL++ + + G+ E +E P+ I+A I L+
Sbjct: 486 TFP--ILQG-HFSAVLQKEEKISPIYGKEEA----REVPI-----ISASTQI---MLKGL 530
Query: 376 YERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPV--L 433
+ L L D + IQ + + + +++ P +++ V L
Sbjct: 531 FMVLDYLFRQNNRFADDYKIAIQQTYSWTNQIDISDKN-GLLVLPKNKKRSRQKTAVHVL 589
Query: 434 QLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM 493
C + ++A + + Q++V+TSGTLSP+ + L + + +
Sbjct: 590 NFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVIKDSQVWVG 649
Query: 494 VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN 553
+ G + F G LL+ + V GI+CF SY ++++ W
Sbjct: 650 TIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWF 709
Query: 554 DSGILKEIMQHKLVFIETQDVVETTLA--LDNYRKACDC---GRGAVFFSVARGKVAEGI 608
+G+ + K V +E Q +T L Y A GA+ +V RGKV+EG+
Sbjct: 710 STGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGL 769
Query: 609 DFDRHYGRLVIMFGVPF 625
DF R VI G+PF
Sbjct: 770 DFSDDNARAVITIGIPF 786
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ + V +YFPY YP Q + M + R L++K HCLLE PTG+GK++ALL
Sbjct: 8 YTIGGVKIYFPY-KAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALL 57
>gi|340378232|ref|XP_003387632.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Amphimedon queenslandica]
Length = 886
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 134/613 (21%), Positives = 256/613 (41%), Gaps = 96/613 (15%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
+ VK+ Y +RT ++ + + E+K T + I L SR+ C+N V
Sbjct: 196 DQTVKIFYASRTHSQLTQFVHEVKKTSYKDT--------VSVIPLGSRQTCCLNKSVTKL 247
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIET----------CEFFE--NYEKAASAAVLPP 172
++ ++ C + + ++ +N ++T C++++ N E A+
Sbjct: 248 QSISLINERCIELQKNKKKSSTRDNDTVKTKRHRTVNSDGCDYYKLNNIETMRDLAL--D 305
Query: 173 GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
+ ++ L G+ CPY+ R+ V A ++V Y LL + ++ K ++V+
Sbjct: 306 EIQDIEQLVTLGRDISGCPYYATRYAVPHAQLIVLPYNILLHSNTRDAVGIKL-KGNIVI 364
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE----YNRL 288
DEAHN+ + SV + T+ + S++ Q +R+++ RL+A+ +++
Sbjct: 365 IDEAHNLIDTISSIHSVHI---TMHQIQKTHSQLLQYRDRYQS----RLKAKNLMYIDQI 417
Query: 289 VEGLALRGNLPIADAWLSNPALPSDILKEAVPGN---IRRAEHFLHV------LRRLVQY 339
+ L L + NP + + ++ + +R E L + +L+QY
Sbjct: 418 LFVLISFQRLLTRSSDTPNPHTSTGTINQSQQEHCELVRLNEFLLKAKIDNINMFKLLQY 477
Query: 340 ---------LRGRLET-----ENVEKEGPVSFVASITAHAG-IDQKTLRFCYERLHSLML 384
L G E+ ++ + + +S+ H G ID+ +R + +
Sbjct: 478 CKKSQIAKKLNGFAESYQRDEATIKDDIGANTSSSVVRHQGDIDRDGIRSPLMIIQQFIE 537
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
+L D D C I+I+ + +L S H
Sbjct: 538 SLTTADQD--------C-------------RIVIKQNSSSQSSLKYLLLNPSVH-----F 571
Query: 445 KPVFDRFQSVVITSGTLSPI-DLYPRLLNFHPV-VSRSFKMS----LTRDCICPMVLTRG 498
+ ++VV+ GT+ P D +L V + R F+ S + D + P+ L++G
Sbjct: 572 TDIVKEARAVVLAGGTMQPFSDFKEQLFTGAGVPIDRFFEFSCGHVIGDDQLLPLTLSKG 631
Query: 499 SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGIL 558
+ + ++ R D + G+ + +V+IVP G+VCFF SY Y + W +G+L
Sbjct: 632 TSGYTFNFNYEQRQDKQMIIELGRTISNIVTIVPGGVVCFFPSYEYEKLVFNIWEKNGLL 691
Query: 559 KEIMQHKLVFIETQDVVETTLALDNYRKACDCG------RGAVFFSVARGKVAEGIDFDR 612
I K +F E + + L L Y + + GA+ V GK++EGI+F
Sbjct: 692 DRIANKKQIFREPKLASQAELVLSQYARCIEVCISVSSLTGALMSCVVGGKLSEGINFSD 751
Query: 613 HYGRLVIMFGVPF 625
+ GR VIM G+P+
Sbjct: 752 NLGRCVIMVGLPY 764
>gi|303390346|ref|XP_003073404.1| Rad3-like ATP dependent DNA binding helicase [Encephalitozoon
intestinalis ATCC 50506]
gi|303302550|gb|ADM12044.1| Rad3-like ATP dependent DNA binding helicase [Encephalitozoon
intestinalis ATCC 50506]
Length = 619
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 146/631 (23%), Positives = 270/631 (42%), Gaps = 127/631 (20%)
Query: 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV-LSKPENPVK------ 69
+Y Q ++ + +R +D + PTGTGKTI+LLS + Y+ + + E +
Sbjct: 6 LYESQKLFIEDARRVIDGGSVGIFSSPTGTGKTISLLSAVADYMDIEETEMDCRNRMLEK 65
Query: 70 ---------LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ YCTRT ++ + + ELK L + ++ L SRK C+N
Sbjct: 66 ILFQGSRKAVFYCTRTHTQLAQAINELKKL----------GVRCNSVVLGSRKIYCLNEE 115
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
+ ++ D ++ AC++ L + CE F+ Y GV ++DL
Sbjct: 116 IRKYKSSDEMNEACKEAVKEGKCMLH------DGCEEFDGY-----------GVIDVEDL 158
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ-KESVVVFDEAHNI 239
A G ++ +CPY+ AR Q ++V YQ L + G S ++ K S+VV DEAHNI
Sbjct: 159 LATGGRERFCPYYTARSYSQQCDIVFLPYQLLFTRE--GRKSADIDVKGSIVVVDEAHNI 216
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR--AEYNRLVEGLALRGN 297
+ I+ + S+ T++ R + +E +K GR++ ++ R++E L G+
Sbjct: 217 YDSVIQMNTASISFGTVD-------RYVKAMELYKKRYGGRMKRDGQFERVMEVLKKIGS 269
Query: 298 LPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
+ D E V G FL L +E N+ +
Sbjct: 270 FRCVHCR----DMEGD---EGVMG----VSEFL---------LGAGIEDFNMLE------ 303
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ A +GI +K F + L +++ + +FL + T+ D + + ++G
Sbjct: 304 IEDYIAVSGISRKLEGFEKD------LNMKLPEISKFLSLLTMSDKSGRILYSSKG---- 353
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
++ + DAS+ + V + +S+++ GT+ PID L
Sbjct: 354 ---------------IKFTPLDASMYFEDVLE-CRSLLLAGGTMEPIDQLVSALRKRSPK 397
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIV-PDGIV 536
S+ S+ +D + P+V+ G + ++ R P ++ ++ + + V G+V
Sbjct: 398 YFSYG-SVCKDFL-PIVIRSGPSGKEIVVNYETRESPMSIKDVASSILNLSNAVRSGGMV 455
Query: 537 CFFVSYSYMDEIIATWNDS-GILKEIMQHKLVFIE-TQDVVETTLALDNYRKACDCGRGA 594
CF S +Y+ + D+ G K + + + F E Q+V R C
Sbjct: 456 CFLPSKAYLKILKEACGDTIGSKKALYEDSVTFEEYVQEV---------RRSPC------ 500
Query: 595 VFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ F+V G ++EG++F+ RL+++ GVP+
Sbjct: 501 ILFAVMGGSLSEGVNFNDSLCRLLVVVGVPY 531
>gi|336466792|gb|EGO54956.1| hypothetical protein NEUTE1DRAFT_147626 [Neurospora tetrasperma
FGSC 2508]
gi|350288617|gb|EGZ69853.1| DNA repair helicase [Neurospora tetrasperma FGSC 2509]
Length = 1068
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 151/630 (23%), Positives = 254/630 (40%), Gaps = 122/630 (19%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLH--------NYQTRHLGPAAKILA-IGLSSRKNL 115
E +K+ Y +RT ++ + + EL+ N Q PA +I+ I LSSR+ L
Sbjct: 331 EEEIKIFYTSRTHSQLTQFIQELRRPEFPASVPTPNPQEE---PAKEIVKQIPLSSRQKL 387
Query: 116 CVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE--------KAASA 167
C+N V N+ AA +R S ++ + P + C + N + +
Sbjct: 388 CINPTV----NKLGTLAAINERCQSLQQS---KTPKEQRCPYLPNAANLKATHEFRDTAL 440
Query: 168 AVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQK 227
A LP ++DL GKQ CPY+ +R + A V+ Y LL + +++
Sbjct: 441 ATLP----DIEDLYQTGKQLQICPYYASRAAIPGAEVITLPYPLLLQKSAREALGIKLEG 496
Query: 228 ESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNR 287
++V+ DEAHNI + + ++ L+ A +L Q + + + A+ R
Sbjct: 497 -NIVIIDEAHNIMDAVSNVHAAEIKYTDLKRAKLSLGMYYQRFHQKLTGENKVMVAQLQR 555
Query: 288 LVEGLALRGNLPIADAWLSNPALPSDI-------LKEAVPGNIRRAEHFLHVLRRLVQYL 340
+VE L + + A L + A I LK I L +L++Y+
Sbjct: 556 VVEALGVYIKTKLDKAALGHKADQEGIVLDTSLLLKTGGADQIN--------LYKLIRYV 607
Query: 341 RGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDE------- 393
+E ++F I + + +C E E DTD+
Sbjct: 608 ----------QESKLAF--KIEGY-------ISYCEE---------EGRDTDDEEAETEI 639
Query: 394 --------FLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVK 445
LH T+C F T + + I E + D L + A
Sbjct: 640 KARQGRPPVLH--TLCSFLTALTNLSSEGRIFYEKIPPPRGELQDMKLSYMLLSPTHAFS 697
Query: 446 PVFDRFQSVVITSGTLSPIDLYPRLL--NFHP--VVSRSFKMSLTRDCICPMVLTRGSDQ 501
+ + ++V++ GT+SP + Y L + P + + S + D +C L +
Sbjct: 698 SIAESARAVILAGGTMSPFEDYKAHLFPDVPPEKITTLSCGHVIPPDNLCVWTLGSIAPN 757
Query: 502 LPVST---------KFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW 552
V T F RS+P + G +L+ + S+VPDG+V FF SY Y++E+I W
Sbjct: 758 PKVDTGIGEDCFDFTFAKRSNPNMINRLGLVLLNLCSVVPDGVVAFFPSYGYLEEVIGVW 817
Query: 553 -------NDSGILKEIMQHKLVFIETQ-DVVETTLAL------DNYRKACDCG---RGAV 595
I + + K +FI+++ + E TL R G +GA+
Sbjct: 818 KTHEQAMGPKTIWERLESKKALFIDSKTESSEQTLQKYSDVIHSEVRPLSPAGSRVKGAM 877
Query: 596 FFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
SV GK++EGI+F GR VI+ G+P+
Sbjct: 878 LLSVIGGKMSEGINFSDRLGRCVIVVGMPY 907
>gi|121704642|ref|XP_001270584.1| DEAD_2 domain protein [Aspergillus clavatus NRRL 1]
gi|206558082|sp|A1CJ34.1|CHL1_ASPCL RecName: Full=ATP-dependent RNA helicase chl1; AltName:
Full=Chromosome loss protein 1
gi|119398730|gb|EAW09158.1| DEAD_2 domain protein [Aspergillus clavatus NRRL 1]
Length = 731
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 134/596 (22%), Positives = 243/596 (40%), Gaps = 97/596 (16%)
Query: 69 KLIYCTRTVHEMEKTLAEL----------KLLHNYQTRHLGPAAKILAIGLSSRKNLCVN 118
K+ YC+RT ++ + +EL K L T ++ + L SRKNLC+N
Sbjct: 76 KIFYCSRTHSQLAQFASELRRVEMPPSLPKELSEKLTDSEALEERVKHLSLGSRKNLCIN 135
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL- 177
RV+ EN +++ C +A E+ C + + K VL +TL
Sbjct: 136 PRVMKLENATAINERCMDLQQP---GMAVEH----RCPYLPS--KDDEPQVLQFRDHTLA 186
Query: 178 -----QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
+D+ GK G CPY+ +R +++ + +V Y LL + + K +V+
Sbjct: 187 TVKDIEDMGKLGKHIGVCPYYASRSVIKHSEIVTLPYPLLLQRSAREALGLSI-KNHIVI 245
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---AEYNRLV 289
DEAHN+ + SV++ L+ A L+ + +FK G+ R A+ RLV
Sbjct: 246 IDEAHNLMDAISNIHSVTITLSQLQTAIFQLTTYAR---KFKTRLKGKNRTYIAQVIRLV 302
Query: 290 EGL-----ALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLH---VLRRLVQYLR 341
+ +++G+ D + L + + + N + H+L + R++ Y+
Sbjct: 303 SSVADHLRSIQGSNQPPDGAVKTSDLMAGKGVDQI--NPYKLSHYLQESKLARKVDGYVE 360
Query: 342 GRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTIC 401
+T N + G S T H+Q+
Sbjct: 361 YSKDTANRQSHGKPS----------------------------------TPVLFHVQSF- 385
Query: 402 DFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTL 461
L+ G ++ + D L+ D + + + + ++V++ GT+
Sbjct: 386 -LLPLMNPSAEGRLFYMKDQN-------DIQLKYLLLDPTNHFREIVEDARAVILAGGTM 437
Query: 462 SPIDLYPRLLNFHPVVSR----SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVA 517
SP+ Y L + SR S+ + + + L +G ++ R +
Sbjct: 438 SPMSDYMNHLFPYVPASRLDTFSYGHVIPPENLVAHTLAQGVMGCAFDFTYESRDSEKMI 497
Query: 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN-------DSGILKEIMQHKLVFIE 570
+ G+ + + +PDG+V FF SY Y+ I+ W + IL I + K + E
Sbjct: 498 IDLGRTVATLCQAIPDGVVAFFPSYDYLSRILHIWKKPLGADKNQTILGLIERKKPILYE 557
Query: 571 TQDVV-ETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
++D+ ++ L Y + D G GA+ SV GK++EGI+F GR V++ G+PF
Sbjct: 558 SRDMTTKSDDILQEYTRTIDSGSGALLLSVIGGKLSEGINFSDRLGRGVLIIGLPF 613
>gi|301777952|ref|XP_002924394.1| PREDICTED: Fanconi anemia group J protein-like [Ailuropoda
melanoleuca]
gi|281342514|gb|EFB18098.1| hypothetical protein PANDA_013720 [Ailuropoda melanoleuca]
Length = 1249
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 140/582 (24%), Positives = 240/582 (41%), Gaps = 65/582 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 245 KIYFGTRTHKQIAQITRELR-----RTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 295
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-----GVYTLQDLRAF 183
C + + N ++C F+ K + L + +++L +
Sbjct: 296 E---KCME---------LLDGKNGKSCYFYHGVHKISDQHTLQTLQGMCKAWDIEELVSL 343
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR +++ A+++ Y YLLD ++ + + KE +V+ DEAHNI++
Sbjct: 344 GKKLKACPYYTARELIEDAHIIFCPYNYLLDAQIRESMDINL-KEQIVILDEAHNIEDCA 402
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
E+ S SV L A L S +N I + D LRA L+ L +
Sbjct: 403 RESASYSVTEVQLRFARDELDSMVNNNIRK---KDHEPLRAVCYSLINWLEANSEHLVER 459
Query: 303 AWLSNPAL--PSDILKEAVPGNIRRAE------HFLHVLRRLVQYL--RGRLETENVEKE 352
+ S+ + S++L I A HF VL++ + L G+ E+
Sbjct: 460 DYESSCKIWSGSEMLLNLHKMGITTATFPILQGHFSAVLQKEEKVLPIHGKEESR----- 514
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
V I+A I K L ++ L D D + IQ + + T +
Sbjct: 515 ----IVPIISASTQIMLKGLFMVFDYL--FRQNSRFAD-DYKVAIQQTYSWINQIDTSDK 567
Query: 413 -GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLL 471
GF + + VL C + ++A + + ++V+TSGTLSP+ + L
Sbjct: 568 NGFFALAKNKKRSRQKTAVHVLNFWCLNPAVAFSDISGKVWTIVLTSGTLSPMKSFSSEL 627
Query: 472 NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIV 531
+ + + + G + F G+LL+ + V
Sbjct: 628 GVTFTIQLEANHVINNSQVWVGTIGSGPKGRNLCATFQHTETFEFQDEVGELLLSVCQTV 687
Query: 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ--------DVVETTLALDN 583
GI+CF SY ++++ W D+G+ + K V +E Q ++++
Sbjct: 688 SQGILCFLPSYKLLEKLKERWLDTGLWDNLELVKTVIVEPQGGEKTDFDELLQVYYDAIK 747
Query: 584 YRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y+ D GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 748 YKGEKD---GALLVAVCRGKVSEGLDFSDDNARAVITIGIPF 786
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V + FPY YP Q + M + R L++K HCLLE PTG+GK++ALL ++ S
Sbjct: 8 YTIGGVKITFPY-KAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66
Query: 63 KPENPV 68
PV
Sbjct: 67 LSGKPV 72
>gi|397614354|gb|EJK62748.1| hypothetical protein THAOC_16627, partial [Thalassiosira oceanica]
Length = 1353
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 150/625 (24%), Positives = 241/625 (38%), Gaps = 126/625 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
+ + ++FP+ Y Q+ YM + AL A H LLE PTGTGKT+ LL
Sbjct: 45 INGIDIHFPF-QPYNVQHQYMSSVITALQASQHALLESPTGTGKTLCLLCSALAWQIREK 103
Query: 54 --------------------------------SLITSYVLSKPENPVKLIYCTRTVHEME 81
+++ + + + PV +IY +RT ++
Sbjct: 104 SRMSVELEGIQSQQEGKTDELAPGPDQSQDGSDEFSNHSVPRKKAPV-IIYASRTHSQLS 162
Query: 82 KTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
+ + EL+ TR+ P IL SR++ C++ +V + +T++
Sbjct: 163 QVMGELR-----NTRYR-PKHSILG----SREHSCIHPKVNPIVAKGKGSPGVEPKTSTE 212
Query: 142 VRALAAENPNIETCEFFENYEKA--ASAAVLPPGVY-------------TLQDLRAFGKQ 186
V ++ C F N E A S LPP V ++DL A GKQ
Sbjct: 213 VNNGCSKLCKERKCMFRNNLEDAQGKSGVWLPPTVQRADENKSFEQPVLDIEDLVALGKQ 272
Query: 187 QGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ-KESVVVFDEAHNIDNVCIE 245
CP++ +R ++ A +++ Y YL D E+ +V++FDEAHN++ E
Sbjct: 273 HKICPFYHSRSHLKEAELILVPYNYLFDRDARETTLAEVDFSNAVLIFDEAHNLEEFASE 332
Query: 246 ALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEY------------NRLVEGLA 293
+ S + + G ++R Q +E T R E + L+EG++
Sbjct: 333 SSSFDLSSADIAGCISEVTRGVQLLEMNPETGDERCNKENLLRLKSMLINFESYLIEGIS 392
Query: 294 LR-GNLPIADAWLSNPA-LPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEK 351
R G ADA S P DI KE + N + +++RL + LE +
Sbjct: 393 HRPGQKLSADAESSQPGEFIFDIFKEGLRVNGENKTLLIDLIQRLSDVV---LEFKGTNT 449
Query: 352 EGPVS---FVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVG 408
G FV+ + G + T R S +HI + G
Sbjct: 450 SGTPKLDHFVSCVKRAFG--KGTFLLALARSKSYR-----------VHISKV----NRGG 492
Query: 409 TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPV-FDRFQSVVITSGTLSPIDLY 467
+ G +I C SLA++ + F +S++ITSGTLSP+ +
Sbjct: 493 GFDTGRTI-----------------SFWCFAPSLAMRELTFLNVRSILITSGTLSPLPSF 535
Query: 468 PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEM 527
L V + D I VL +G +S+K+ R DP + G L +
Sbjct: 536 SMELGLDFPVQLENDHVIKPDQIFVRVLGKGVSGKELSSKYGRRDDPEYIKELGDTLASL 595
Query: 528 VSIVPDGIVCFFVSYSYMDEIIATW 552
+P G++ FF SY M I W
Sbjct: 596 AGNIPAGVLVFFTSYGAMQTAIGRW 620
>gi|164429296|ref|XP_001728521.1| hypothetical protein NCU11409 [Neurospora crassa OR74A]
gi|206557740|sp|A7UXD4.1|CHL1_NEUCR RecName: Full=ATP-dependent RNA helicase chl-1; AltName:
Full=Chromosome loss protein 1
gi|157073424|gb|EDO65430.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1073
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 147/638 (23%), Positives = 250/638 (39%), Gaps = 138/638 (21%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLH--------NYQTRHLGPAAKILA-IGLSSRKNL 115
E +K+ Y +RT ++ + + EL+ N Q + PA +I+ I LSSR+ L
Sbjct: 331 EEEIKIFYTSRTHSQLTQFIQELRRPEFPASVPTPNPQEK---PAKEIVKQIPLSSRQKL 387
Query: 116 CVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE--------KAASA 167
C+N V N+ AA +R S + + P + C + N + +
Sbjct: 388 CINPTV----NKLGTLAAINERCQSLQQP---KTPKDQRCPYLPNAANLKATHEFRDTAL 440
Query: 168 AVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQK 227
A LP ++DL GKQ CPY+ +R + A V+ Y LL + ++
Sbjct: 441 ATLP----DIEDLYQTGKQLQICPYYASRAAIPGAEVITLPYPLLLQKSAREALGIRLEG 496
Query: 228 ESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNR 287
++V+ DEAHNI + + ++ L+ A +L Q + + + A+ R
Sbjct: 497 -NIVIIDEAHNIMDAVSNVHAAEIKYTDLKRAKLSLGMYYQRFHQKLTGENKVMVAQLQR 555
Query: 288 LVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETE 347
+VE L + YL+ +L+
Sbjct: 556 VVEALGV--------------------------------------------YLKTKLDKA 571
Query: 348 ----NVEKEGPVSFVASITAHAGIDQ----KTLRFCYERLHSLMLTLEIT-------DTD 392
++EG V + + G DQ K +R+ E + + I+ DTD
Sbjct: 572 ALGLKADQEGIVLDTSLLLKTGGADQINLYKLIRYVQESKLAFKIEGYISYCEEEGRDTD 631
Query: 393 E---------------FLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSC 437
+ LH T+C F T + + I E + D L
Sbjct: 632 DEEAETEIKARQGRPPVLH--TLCSFLTALTNLSSEGRIFYEKIPPPRGELQDMKLSYML 689
Query: 438 HDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLL--NFHP--VVSRSFKMSLTRDCICPM 493
+ A + + ++V++ GT+SP + Y L + P + + S + D +C
Sbjct: 690 LSPTHAFSSIAESARAVILAGGTMSPFEDYKAHLFPDVPPEKITTLSCGHVIPPDNLCVW 749
Query: 494 VLTRGSDQLPVST---------KFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSY 544
L + V T F RS+P + G +L+ + S+VPDG+V FF SY Y
Sbjct: 750 TLGSIAPNPKVDTGIGEDCFDFTFAKRSNPNMINRLGLVLLNLCSVVPDGVVAFFPSYGY 809
Query: 545 MDEIIATW-------NDSGILKEIMQHKLVFIETQ-DVVETTLAL------DNYRKACDC 590
++E+I W I + + K +FI+++ + E TL R
Sbjct: 810 LEEVIGVWKTHEQAMGPKTIWERLESKKALFIDSKTESSEQTLQKYSDVIHSEVRPLSPA 869
Query: 591 G---RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
G +GA+ SV GK++EGI+F GR V++ G+P+
Sbjct: 870 GSRVKGAMLLSVIGGKMSEGINFSDRLGRCVVVVGMPY 907
>gi|332029639|gb|EGI69528.1| Putative ATP-dependent RNA helicase DDX11-like protein [Acromyrmex
echinatior]
Length = 857
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 128/606 (21%), Positives = 256/606 (42%), Gaps = 86/606 (14%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGP-AAKILAIGLSSRKNLCVNSRVLAAEN 126
K+ +C+RT ++ + + ELK P + +I + LSSR+N C+N V ++
Sbjct: 190 TKIFFCSRTHSQLTQFVHELKR---------SPYSQEISVVPLSSRQNYCINKNVKRLKH 240
Query: 127 RDSVDAACRKRTASWVRALAAEN----PNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
+ ++ C + ++ +C F +K A VL + ++++
Sbjct: 241 INLINETCLQLQKKKTTVKKEKDLKRSKTTSSCPFIPGDQKLLMAEVLT-NIQDIEEITQ 299
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G++ CPY+ +R +Q +++ Y + + ++ K ++++ DEAHN+ +
Sbjct: 300 KGQENNTCPYYGSRKSLQNGQLILVPYNSIFHKNTRASLEIDL-KGNILIIDEAHNLLDA 358
Query: 243 CIEALSVSVRRQTLEGATRNL----SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IE + SV + G RNL S+++Q +RF++ + + +L L+ L
Sbjct: 359 -IERMHSSV----ITG--RNLLHCYSQLSQYQKRFESLFSAKSVMYLGQL--SFCLKKLL 409
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLR----------------RLVQYLRG 342
+ A + + P+D + + + + + E F ++ +L+ L+G
Sbjct: 410 TLFGATMK--SHPNDAIDKTIVPKLYKIEDFEMLIEIDTVNIFKLLEFIKTSKLIHKLQG 467
Query: 343 ---------RLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDE 393
++ + +K G F+ SI + Q+T+ ++I+ +E
Sbjct: 468 FVEQYGNNIKINEQKTKKSGITEFLNSIKNNDVSSQETIS-----------VVDISSNNE 516
Query: 394 FLH---IQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR 450
+ I F + I + P I +++ + + +
Sbjct: 517 EQTSNPLMAILSFLECLKNSCADGRICVLP----STTIGQGIIKFLLLNPAAHFHDIVKD 572
Query: 451 FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM------VLTRGSDQLPV 504
+SVV+ GT+ P+ + L + M+ + D + P V+TRG +
Sbjct: 573 ARSVVLAGGTMEPMSEFVDQLFLMAGATSDRIMTFSCDHVIPKENIISNVITRGPTGIEF 632
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
+ R D + G+ L+ + ++VP GIV FF SY+Y D + + SG + +I
Sbjct: 633 EFNYHNRQDTKLLDELGRALLNLCNVVPAGIVVFFPSYNYEDTVFKHLDKSGFISKISTK 692
Query: 565 KLVFIETQDVVETTLALDNYRKACD-----CGRGAVFFSVARGKVAEGIDFDRHYGRLVI 619
K ++ E + + LD Y + C GA+ FSV GK++EG++F GR VI
Sbjct: 693 KCIYREPKLASQVNTILDQYAHSIKNPQFPCN-GALLFSVVGGKLSEGLNFSDDLGRCVI 751
Query: 620 MFGVPF 625
+ G+P+
Sbjct: 752 VVGLPY 757
>gi|340931927|gb|EGS19460.1| hypothetical protein CTHT_0049210 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 918
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 151/622 (24%), Positives = 248/622 (39%), Gaps = 113/622 (18%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKL--------LHNYQTRHLG---PAAKILAIGLSSRK 113
E VK+ Y +RT ++ + + EL+ T +LG P + + LSSR+
Sbjct: 215 EEEVKIYYTSRTHSQIAQFIGELRRPAFPTSIPEDMLSTDNLGKGPPTEPVKQVPLSSRQ 274
Query: 114 NLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG 173
LC+N V + +++ C + PN + + + A+ LP
Sbjct: 275 KLCINPSVARLNSLSAINDRCTELQQGKSGHKCPFIPNADNLKQVHEFRDTVLAS-LP-- 331
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++DL GK CPY+ +R + A VV Y LL + +++ ++V+
Sbjct: 332 --DIEDLYRVGKDLQVCPYYASREAIPGAEVVTLPYPLLLQKSAREALGIKLEG-NIVII 388
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---AEYNRLVE 290
DEAHNI + + +R L A L ++RF G R A+ R+VE
Sbjct: 389 DEAHNIMDAIANVHAAEIRLSELRRAREMLGVY---VKRFGKKLKGENRMMVAQVGRVVE 445
Query: 291 GLALRGNLPIADAWLSNPALPSDILKEAVPGN----IRRAEHFLHVLRRLVQYLRGRLET 346
L+ WL N AL V N R A+ L +L++Y++
Sbjct: 446 SLS---------EWL-NTALNGKGDHGIVDSNSLLKARGADQI--NLYQLIKYIQDSKLA 493
Query: 347 ENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATL 406
VE S+V+ Q LH+L+ + T
Sbjct: 494 YKVE-----SYVSHKEEEEAQGQGKTSTTTPVLHTLV---------------SFLSALTN 533
Query: 407 VGTYTRGF--SIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI 464
+ T R F ++ P D ++ ++ L H A + ++V++ GT+SP
Sbjct: 534 LSTEGRIFYEKLLTTPSDIKLSYL----LLSPTH----AFSSIVSAARAVILAGGTMSPF 585
Query: 465 DLYPRLLNFHPVVSRSFKMSLTRDCICP--------MVLTRGSDQLPVSTK------FDM 510
D Y + P++S +L+ + P + TR Q + F
Sbjct: 586 DDYK--AHLFPMLSEDKITTLSCGHVIPSSNLFVWTLASTRPGQQGSAAASDAFEFSFQK 643
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN--------------DSG 556
RSDP + R G +L+ + S+VPDG+V FF SYSY+DE++A W
Sbjct: 644 RSDPAMIRQLGLVLLNICSVVPDGVVVFFPSYSYLDEVVAAWQAPETQNGPSVSFQRKQT 703
Query: 557 ILKEIMQHKLVFIETQDVVETTLALDNY-----------RKACD-CGR-GAVFFSVARGK 603
+ + K +F E++ + L Y R+ D GR GA+ SV GK
Sbjct: 704 LWDRLAAKKTLFRESKGGSSDEI-LQQYSDAIFSAGTASRQQLDPTGRGGALLLSVVGGK 762
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
++EGI+F GR V++ G+P+
Sbjct: 763 LSEGINFSDRLGRCVVVVGLPY 784
>gi|325180138|emb|CCA14540.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 911
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 113/451 (25%), Positives = 197/451 (43%), Gaps = 57/451 (12%)
Query: 198 MVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLE 257
M+Q A+++ Y YL DP + ++ ++++FDEAHN+++V +A S S + E
Sbjct: 1 MLQHADIIFVPYNYLTDPIARTSLGISIEN-AILIFDEAHNVESVASDAFSYSF---SCE 56
Query: 258 GATRNLSRINQ-----EIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPS 312
+ +S I E +R + ++ E +++ L L +A+ LS PS
Sbjct: 57 DISACVSEIQHFVFAVETKRILLSSETQINIESAEMLKALLLEIGKALAEFSLS----PS 112
Query: 313 DILKEAVPGNIRRAEHFLHVLRRL-VQYLRGRLETENVEKEGPVSFVASITAHAGIDQKT 371
G +R E+ +R V + L +E+ + +T G ++ +
Sbjct: 113 G-------GLTKRGEYIFEFFKRFNVTFKTCPLVISTIEE------IIELTQRQGGEESS 159
Query: 372 LRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPD- 430
R RL M L E Q I +R + + I+ +R + P
Sbjct: 160 HR--NSRLDMFMTFLNTVFRSE-KEAQAI----------SRHYRVHIQETKQRRANTPKL 206
Query: 431 ------------PVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVV 477
V C L + + + ++++TSGTLSP+ R L +
Sbjct: 207 FNSFGNNTGKMTRVFNYWCFHPGLTFQDIRSKNVYNIILTSGTLSPLKTTIRELGIEFPI 266
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
K + VL++G +++ ++ RS P G +V V P+GI+
Sbjct: 267 QLENKHVIDASQAWVGVLSKGVTGKRLNSSYNYRSTPEYLSELGNTIVNFVRATPNGILV 326
Query: 538 FFVSYSYMDEIIATWNDS--GILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR-GA 594
FF SY+ +++ I+ W S I I + K VF+E ++ E + +D Y ++ + GA
Sbjct: 327 FFPSYTILEDSISFWQKSPCTIWIRIAKLKEVFVEPRNRTEFNVIVDEYHQSIKVKQEGA 386
Query: 595 VFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
VFF+V RG+V+EGIDF GR V++ G+PF
Sbjct: 387 VFFAVCRGRVSEGIDFANEKGRAVVITGLPF 417
>gi|392862459|gb|EAS36901.2| ATP-dependent RNA helicase CHL1 [Coccidioides immitis RS]
Length = 908
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 148/644 (22%), Positives = 265/644 (41%), Gaps = 113/644 (17%)
Query: 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSK----PENPVKLIYCTRTVHEMEKTLAELK 88
DAK + L + TIALL ++ + EN VK+ YC+RT ++ + EL+
Sbjct: 208 DAKSNSDL-----SATTIALLEKLSGSAEIQDDFEEENAVKIFYCSRTHSQLAQFARELR 262
Query: 89 LL-----------------HNYQTRH----LGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
+ RH L K +++G SRK +C+N +V N
Sbjct: 263 RVVFPPSIPPETEDGEIDTQGEGRRHPDTELEEPTKHVSLG--SRKTMCINPKVRRLGNA 320
Query: 128 DSVDAACRKRTASWVRA-----LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
+++ C +S V A N F ++ A V+ ++D+
Sbjct: 321 TAINERCLDLQSSNVLPGHKCPFAPSKENELAINDFRDHVLAE--------VHDIEDIGK 372
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G++ G CPY+ +R ++ + +V YQ LL + + K+ V++ DEAHN+ +V
Sbjct: 373 IGQRTGICPYYASRSVIGHSEIVTLPYQLLLQKSARDALDISL-KDHVIIIDEAHNLMDV 431
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
SV+V +L L ++ ++KA G+ NR+ +R
Sbjct: 432 IANIHSVNV---SLTQLRIGLEQLTIYARKYKARLKGK-----NRVYVAQVMR------- 476
Query: 303 AWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASIT 362
+L + +YL L + +EG V + +
Sbjct: 477 -----------------------------LLGSIAKYLESVLAAREL-REGAVD-PSYLM 505
Query: 363 AHAGIDQKTLRFCYERLHSLMLT------LEITDTDEFLHIQTICDFATLVGTYTRGFSI 416
+ GIDQ L L L +E + + E + +T L + S+
Sbjct: 506 SGKGIDQINLHKLSRYLQESKLARKVDGYIESSTSLEEKNPETSTTVPVLFQVQSFLLSL 565
Query: 417 IIEPFDERM---PHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLN 472
+ + R+ + D +L+ + D + + + ++V++ GT+SP+ D L +
Sbjct: 566 MNPSAEGRLFFEKNGNDVLLKYTLLDPTAHFREAVEEARAVILAGGTMSPMSDYRDHLFS 625
Query: 473 F-HPVVSRSFKMS--LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
+ P R+F + + ++RG F+ R+ + + GK + E+
Sbjct: 626 YLAPGQLRTFSYGHVIPTSNLSARPVSRGILDTEFDFTFEKRNSRAMIIDLGKTISEICK 685
Query: 530 IVPDGIVCFFVSYSYMDEIIATW----NDSG---ILKEIMQHKLVFIETQDVVETTLAL- 581
PDG+V FF SY ++++++ W ++SG IL + K + E+++ T AL
Sbjct: 686 ATPDGVVAFFPSYDFLNQVVEIWKQPCSNSGNPSILDSLGLVKPLLYESKEKAMNTEALL 745
Query: 582 DNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y D G+GA+ SV GK++EGI+F GR VI+ G+PF
Sbjct: 746 QKYANFIDEGKGALLLSVMGGKLSEGINFSDRLGRGVIVIGLPF 789
>gi|440492759|gb|ELQ75300.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH [Trachipleistophora hominis]
Length = 267
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 85/136 (62%), Gaps = 7/136 (5%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MIFK+ ++ +YFPY I PEQ SY+ E + + +EMP G+GKTI +LS SY
Sbjct: 1 MIFKISNIPIYFPYPTISPEQLSYIKETIASFTTTSNLFIEMPAGSGKTICILSAAVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
L E+ V+ +YCTRTV E EKTL ELK L Y +H+ K + +GL+SRK+LCVN
Sbjct: 61 LYHVEDDVRFVYCTRTVQESEKTLVELKTLIAYVKQHV--KVKYMGLGLTSRKHLCVNED 118
Query: 121 VLAAENRDSVDAACRK 136
V + +++ +CRK
Sbjct: 119 V-----QGNIEMSCRK 129
>gi|330930952|ref|XP_003303208.1| hypothetical protein PTT_15338 [Pyrenophora teres f. teres 0-1]
gi|311320914|gb|EFQ88691.1| hypothetical protein PTT_15338 [Pyrenophora teres f. teres 0-1]
Length = 865
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 140/609 (22%), Positives = 261/609 (42%), Gaps = 94/609 (15%)
Query: 66 NPVKLIYCTRTVHEMEKTLAELKLLH-----NYQTRHLGPAAKILA-----IGLSSRKNL 115
+ K+ +C+RT ++ + +EL + G AK L + L SRKNL
Sbjct: 198 DETKIFFCSRTHSQLTQFSSELGRVKMPPAIAPDDAENGGGAKSLVEDVKHLTLGSRKNL 257
Query: 116 CVNSRVLAAENRDSVDAACRK-RTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGV 174
C+NS+V + +++ C + + +S P E+ ++ A A +
Sbjct: 258 CINSKVNRLGSATAINEQCLELQQSSVAETRCPHMPTKESEPLINDFRDHALAKI----- 312
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
++DL + GK+ G CPY+ +R ++ +V Y LL + + K+ +V+ D
Sbjct: 313 RDIEDLGSLGKKLGVCPYYASRPATKYCEIVTLPYPLLLQRSAREALGISL-KDHIVIID 371
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---AEYNRLVEG 291
EAHN+ + SVSV TLE + +++ +++F+ G+ R A+ R+++
Sbjct: 372 EAHNLMDAIAGIYSVSV---TLEQVQQARTQLTVYLQKFRNKLKGKNRVYVAQTVRILDS 428
Query: 292 L-----ALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLR--RLVQYLRGRL 344
+ + ++D + ++ S + + NI + +L R R V +
Sbjct: 429 IVGYLQTIHDKPGMSDGLVDMVSIMSGKGVDQI--NIYKLNTYLQESRLARKVDGYTAYV 486
Query: 345 ETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFA 404
E EK ++T+ + +K R H++ + +H+Q
Sbjct: 487 EETTNEK--------AMTSTKQVGKKGPR------HNVPV---------LMHVQAF--LL 521
Query: 405 TLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI 464
+L+ T G D M L+ D + K + + ++V++ GT+SP+
Sbjct: 522 SLMNPSTEGRFFYSREEDTGM------TLRYMLLDPTFHFKEIVEEARAVILAGGTMSPM 575
Query: 465 DLYPR-LLNFHPVVSRSFKMSLTRDCICP------MVLTRGSDQLPVSTKFDMRSDPGVA 517
Y + LL++ + S M+L+ + P + + R S + F+ R+
Sbjct: 576 SDYEQHLLSY---LEPSKIMTLSCGHVIPPSNLLAVPVMRTSGGVEFDFTFENRNKEKTM 632
Query: 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW-------NDSGILKEIMQHKLVFIE 570
+ G ++ +PDG+V FF SYSY+D +A W + + Q K VF+E
Sbjct: 633 IDLGTAILNFSQHIPDGVVVFFPSYSYLDTCVAAWKRIKQSASKATFWDNFTQSKPVFLE 692
Query: 571 -------------TQDV-VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGR 616
++DV V + L+ + A GRGA+ F+V G ++EGI+F GR
Sbjct: 693 QRSQQQASDQVPASKDVAVASVLSTYSAAIASGNGRGALLFAVIGGTLSEGINFSDALGR 752
Query: 617 LVIMFGVPF 625
V++ G+PF
Sbjct: 753 GVVVVGLPF 761
>gi|297715610|ref|XP_002834155.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Pongo abelii]
Length = 1248
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 146/583 (25%), Positives = 239/583 (40%), Gaps = 67/583 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ + NR+
Sbjct: 245 KIYFGTRTHKQIAQITRELR-----RTAYSGVPMTIL----SSRDHTCVHPEAVGNFNRN 295
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-----GVYTLQDLRAF 183
C + + N ++C F+ K + L + +++L +
Sbjct: 296 E---KCME---------LLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSL 343
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 344 GKKIKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCA 402
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLV-------EGLALR 295
E+ S SV L A L S +N I + D LRA L+ E L R
Sbjct: 403 RESASYSVTEVQLRFARDELDSMVNNNIRK---KDHEPLRAVCYSLINWLEANSEYLVER 459
Query: 296 GNLPIADAWLSNPALPS----DILKEAVPGNIRRAEHFLHVLRRLVQYL--RGRLETENV 349
W N L + I P I + HF VL++ + L G+ ET
Sbjct: 460 DYESACKIWSGNEMLLTLHKMGITTATFP--ILQG-HFSAVLQKEEKILPIYGKEET--- 513
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
+E PV I+A I L+ + L L D + IQ + +
Sbjct: 514 -REVPV-----ISASTQI---MLKGLFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDI 564
Query: 410 YTRGFSIIIEPFDERMPHIPDPV--LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY 467
+ +++ P +++ V L C + ++A + + Q++V+TSGTLSP+ +
Sbjct: 565 SDKN-GLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSF 623
Query: 468 PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEM 527
L + + + + G + F G LL+ +
Sbjct: 624 SSELGVTFTIQLEANHVIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSV 683
Query: 528 VSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA--LDNYR 585
V GI+CF SY ++++ W +G+ + K V +E Q +T L Y
Sbjct: 684 CQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYY 743
Query: 586 KACDCG---RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
A GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 744 DAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPF 786
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ + V +YFPY YP Q + M + R L++K HCLLE PTG+GK++ALL
Sbjct: 8 YTIGGVKIYFPY-KAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALL 57
>gi|195347574|ref|XP_002040327.1| GM18989 [Drosophila sechellia]
gi|194121755|gb|EDW43798.1| GM18989 [Drosophila sechellia]
Length = 868
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 156/616 (25%), Positives = 259/616 (42%), Gaps = 89/616 (14%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV----- 121
PV++ +C+RT ++ + + EL+ + Q+ + I L SR+ LC N V
Sbjct: 194 PVQIFFCSRTHSQLAQIVTELRKTPHGQS--------VRCISLGSRQQLCRNPAVRKLKH 245
Query: 122 LAAENRDSVDAACRKR--TASWVRALAAENPNIETCEFFENYEKAASA-------AVLPP 172
+ N +D A +K S L AE + C F KAAS A+ P
Sbjct: 246 VGLMNERCLDMATKKARPNPSKKSRLTAETNS--RCPF-----KAASLVESLRDLALTEP 298
Query: 173 GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
+++L G G C Y+ +R V+ A +++ YQ LL + + K S+V+
Sbjct: 299 --LDIEELANEGTACGGCSYYASRSAVEHAQLILLPYQLLLQKSARNQLGISL-KASIVI 355
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGL 292
DEAHN+ + + + RQ LE A +S E F+ A + + N++V
Sbjct: 356 VDEAHNLLDSVAQLHGSEINRQQLERAKVQISAYK---EHFQKRFATKNLLKINQIV--F 410
Query: 293 ALRGNLPIADAWLSNPALPSDILK------EAVPGNIRRAEHFLHVLR----RLVQYLRG 342
+R L I D + + + S +++ E NI + R R VQ
Sbjct: 411 IVRRLLKILDQRMESQSNGSSMMRTYELTAEGDFFNIDLCDLLDFCARTRFARKVQGHAD 470
Query: 343 RLETEN--VEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLE-ITDTDEFLHIQT 399
R+E E E + PVS S+ ++ L+ E+ S+ +E I D+ +Q
Sbjct: 471 RMEREPRPSENQPPVSTARSLILQRLASEQKLK---EKPKSVKRKVEDINKEDKAGELQE 527
Query: 400 -------------------ICDFATLVGTYTRGFSIIIEPFDERMPHIP-DPVLQLSCHD 439
+ F + + I+++P + +I DP Q +
Sbjct: 528 EQKPPKKPVQEVAPSPIRPLLAFLETLTSNAEDGRILLDPVGGTLKYILLDPAEQFA--- 584
Query: 440 ASLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLNF--HPVVSRSFKMSLTRDCICPMVLT 496
+ +++VI GT+ P +L +L +V R + + D + P V++
Sbjct: 585 ------DIVAETRAIVIAGGTMQPTQELKEQLFTGCQDRLVERFYNHVVADDAVLPFVIS 638
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG 556
G P+S KF R+ + R +L + +VP G+VCF SY Y+D++ SG
Sbjct: 639 NGPSGAPLSFKFAHRASAEMLRELSMVLRNLCQVVPGGVVCFLPSYEYLDKVYKYLEQSG 698
Query: 557 ILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAEGIDFDRHY 614
L+ I K VF E E LDNY A GA+ SV GK++EG++F
Sbjct: 699 TLETISCRKSVFREVSGSAEQL--LDNYALAIKRPASGGALLLSVVGGKLSEGLNFADDL 756
Query: 615 GRLVIMFGVPFQYTLS 630
GR V++ G+P+ + S
Sbjct: 757 GRAVLVVGLPYSNSQS 772
>gi|301897118|ref|NP_114432.2| Fanconi anemia group J protein [Homo sapiens]
gi|119571815|gb|EAW51430.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a
[Homo sapiens]
gi|119571816|gb|EAW51431.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a
[Homo sapiens]
gi|119571817|gb|EAW51432.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a
[Homo sapiens]
gi|119571818|gb|EAW51433.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a
[Homo sapiens]
Length = 1249
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 145/583 (24%), Positives = 239/583 (40%), Gaps = 67/583 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 245 KIYFGTRTHKQIAQITRELR-----RTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 295
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-----GVYTLQDLRAF 183
C + + N ++C F+ K + L + +++L +
Sbjct: 296 E---KCME---------LLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSL 343
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 344 GKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCA 402
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLV-------EGLALR 295
E+ S SV L A L S +N I + D LRA L+ E L R
Sbjct: 403 RESASYSVTEVQLRFARDELDSMVNNNIRK---KDHEPLRAVCCSLINWLEANAEYLVER 459
Query: 296 GNLPIADAWLSNPALPS----DILKEAVPGNIRRAEHFLHVLRR--LVQYLRGRLETENV 349
W N L + I P I + HF VL++ + + G+ E
Sbjct: 460 DYESACKIWSGNEMLLTLHKMGITTATFP--ILQG-HFSAVLQKEEKISPIYGKEEA--- 513
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
+E PV I+A I L+ + L L D + IQ + +
Sbjct: 514 -REVPV-----ISASTQI---MLKGLFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDI 564
Query: 410 YTRGFSIIIEPFDERMPHIPDP--VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY 467
+ +++ P +++ VL C + ++A + + Q++V+TSGTLSP+ +
Sbjct: 565 SDKN-GLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSF 623
Query: 468 PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEM 527
L + + + + G + F G LL+ +
Sbjct: 624 SSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSV 683
Query: 528 VSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA--LDNYR 585
V GI+CF SY ++++ W +G+ + K V +E Q +T L Y
Sbjct: 684 CQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYY 743
Query: 586 KACDC---GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
A GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 744 DAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPF 786
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ + V +YFPY YP Q + M + R L++K HCLLE PTG+GK++ALL
Sbjct: 8 YTIGGVKIYFPY-KAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALL 57
>gi|57012613|sp|Q9BX63.1|FANCJ_HUMAN RecName: Full=Fanconi anemia group J protein; Short=Protein FACJ;
AltName: Full=ATP-dependent RNA helicase BRIP1; AltName:
Full=BRCA1-associated C-terminal helicase 1; AltName:
Full=BRCA1-interacting protein C-terminal helicase 1;
Short=BRCA1-interacting protein 1
gi|13661819|gb|AAK38111.1|AF360549_1 BRCA1-binding helicase-like protein BACH1 [Homo sapiens]
gi|75516497|gb|AAI01473.1| BRCA1 interacting protein C-terminal helicase 1 [Homo sapiens]
gi|75516501|gb|AAI01475.1| BRCA1 interacting protein C-terminal helicase 1 [Homo sapiens]
gi|313883612|gb|ADR83292.1| BRCA1 interacting protein C-terminal helicase 1 [synthetic
construct]
Length = 1249
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 145/583 (24%), Positives = 239/583 (40%), Gaps = 67/583 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 245 KIYFGTRTHKQIAQITRELR-----RTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 295
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-----GVYTLQDLRAF 183
C + + N ++C F+ K + L + +++L +
Sbjct: 296 E---KCME---------LLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSL 343
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 344 GKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCA 402
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLV-------EGLALR 295
E+ S SV L A L S +N I + D LRA L+ E L R
Sbjct: 403 RESASYSVTEVQLRFARDELDSMVNNNIRK---KDHEPLRAVCCSLINWLEANAEYLVER 459
Query: 296 GNLPIADAWLSNPALPS----DILKEAVPGNIRRAEHFLHVLRR--LVQYLRGRLETENV 349
W N L + I P I + HF VL++ + + G+ E
Sbjct: 460 DYESACKIWSGNEMLLTLHKMGITTATFP--ILQG-HFSAVLQKEEKISPIYGKEEA--- 513
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
+E PV I+A I L+ + L L D + IQ + +
Sbjct: 514 -REVPV-----ISASTQI---MLKGLFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDI 564
Query: 410 YTRGFSIIIEPFDERMPHIPDP--VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY 467
+ +++ P +++ VL C + ++A + + Q++V+TSGTLSP+ +
Sbjct: 565 SDKN-GLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSF 623
Query: 468 PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEM 527
L + + + + G + F G LL+ +
Sbjct: 624 SSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSV 683
Query: 528 VSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA--LDNYR 585
V GI+CF SY ++++ W +G+ + K V +E Q +T L Y
Sbjct: 684 CQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYY 743
Query: 586 KACDC---GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
A GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 744 DAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPF 786
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ + V +YFPY YP Q + M + R L++K HCLLE PTG+GK++ALL
Sbjct: 8 YTIGGVKIYFPY-KAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALL 57
>gi|429962084|gb|ELA41628.1| hypothetical protein VICG_01376 [Vittaforma corneae ATCC 50505]
Length = 657
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 139/639 (21%), Positives = 272/639 (42%), Gaps = 108/639 (16%)
Query: 4 KLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV--- 60
K + V PY+ YP Q + +L + L+E PTGTGK++++L + ++
Sbjct: 5 KFNGIPVEIPYEP-YPPQLVTISKLIECFQTNTNALIESPTGTGKSLSILCSVLAFYEQE 63
Query: 61 ---LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCV 117
++ P K+ C+RT ++++ + +L R +I +G S+ C+
Sbjct: 64 KRRFNEQNKPFKIFICSRTHKQIDQLIDQL--------RKTIYRPRITVLG--SKNQYCI 113
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
NS + E++++ A K+ A C +F ++ + ++ +
Sbjct: 114 NSTLSKVEDKNTACAELIKKKA---------------CVYFNGKDRLIKR--IGEKIFDI 156
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ-KESVVVFDEA 236
++L+ GK+ CPYF AR + + A+++ Y YL+D V S E++ ++++ DEA
Sbjct: 157 EELKREGKKCAGCPYFTARELQEDADIIFAPYNYLIDTSVRE--SSEIKLDNAILIIDEA 214
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATD-AGRLRAEYNRLVEGLALR 295
HNI++ C A SV + + +E IN+ I K + G +R E+ L++
Sbjct: 215 HNIEDCCRSAGSVEITSKLIEIV------INELIGAIKRSALLGEVRGEFLSLMDIFR-- 266
Query: 296 GNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPV 355
+ D +N D+ + IR+ + + L ++ V KE +
Sbjct: 267 ---KLKDHSQTNEF---DVKGKENQMKIRKGKEVIEELDKM-----------GVGKEAFL 309
Query: 356 SFVASITA-HAGIDQKTLRFCYERLHSLMLTLEITDTDEFLH-IQTICDFATLVGTYTRG 413
S+ S+ A D K+L L+L +T FL ++ I G+
Sbjct: 310 SYKNSLQAIMKNEDAKSL-----------LSL---NTSRFLQEMERILGMVLFTGSEAYA 355
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
+ + DE + L D S+ P+ + +S+ + SGTL+P + L F
Sbjct: 356 YC-FTKYKDEGYSY------NLWLLDPSVMFLPLVSKIKSISLLSGTLTPFSSFCSELKF 408
Query: 474 ---HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSI 530
H +V+ + + + + +G + + + K++V++
Sbjct: 409 QFQHKLVAPHI---IRTEQVFVASIRKGHLKQDLCGTYSTAETVAYLDQVSKIVVDIALH 465
Query: 531 VPD--GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD--VVETTLALDNYRK 586
V + G + F SYS+++++ + + +E +D +VE A++ Y++
Sbjct: 466 VKNEGGTLVFVPSYSFLNKLAGRISGA------------IVEPKDGGMVEFEKAIEAYKQ 513
Query: 587 ACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
++F V RGK +EG+DF Y R V+ G+P+
Sbjct: 514 RIQKKATSIFICVYRGKASEGVDFRDEYSRAVVAIGIPY 552
>gi|397486822|ref|XP_003814520.1| PREDICTED: Fanconi anemia group J protein [Pan paniscus]
Length = 1249
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 145/583 (24%), Positives = 239/583 (40%), Gaps = 67/583 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 245 KIYFGTRTHKQIAQITRELR-----RTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 295
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-----GVYTLQDLRAF 183
C + + N ++C F+ K + L + +++L +
Sbjct: 296 E---KCME---------LLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSL 343
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 344 GKKLKSCPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCA 402
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLV-------EGLALR 295
E+ S SV L A L S +N I + D LRA L+ E L R
Sbjct: 403 RESASYSVTEVQLRFARDELDSMVNNNIRK---KDHEPLRAVCCSLINWLEANAEYLVER 459
Query: 296 GNLPIADAWLSNPALPS----DILKEAVPGNIRRAEHFLHVLRR--LVQYLRGRLETENV 349
W N L + I P I + HF VL++ + + G+ E
Sbjct: 460 DYESACKIWSGNEMLLTLHKMGITTATFP--ILQG-HFSAVLQKEEKISPIYGKEEA--- 513
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
+E PV I+A I L+ + L L D + IQ + +
Sbjct: 514 -REVPV-----ISASTQI---MLKGLFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDI 564
Query: 410 YTRGFSIIIEPFDERMPHIPDPV--LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY 467
+ +++ P +++ V L C + ++A + + Q++V+TSGTLSP+ +
Sbjct: 565 SDKN-GLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSF 623
Query: 468 PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEM 527
L + + + + G + F G LL+ +
Sbjct: 624 SSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSV 683
Query: 528 VSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA--LDNYR 585
V GI+CF SY ++++ W +G+ + K V +E Q +T L Y
Sbjct: 684 CQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYY 743
Query: 586 KACDC---GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
A GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 744 DAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPF 786
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ + V +YFPY YP Q + M + R L++K HCLLE PTG+GK++ALL
Sbjct: 8 YTIGGVKIYFPY-KAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALL 57
>gi|114669761|ref|XP_511607.2| PREDICTED: Fanconi anemia group J protein [Pan troglodytes]
gi|410223276|gb|JAA08857.1| BRCA1 interacting protein C-terminal helicase 1 [Pan troglodytes]
gi|410257750|gb|JAA16842.1| BRCA1 interacting protein C-terminal helicase 1 [Pan troglodytes]
gi|410303552|gb|JAA30376.1| BRCA1 interacting protein C-terminal helicase 1 [Pan troglodytes]
gi|410331379|gb|JAA34636.1| BRCA1 interacting protein C-terminal helicase 1 [Pan troglodytes]
Length = 1249
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 145/583 (24%), Positives = 239/583 (40%), Gaps = 67/583 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 245 KIYFGTRTHKQIAQITRELR-----RTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 295
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-----GVYTLQDLRAF 183
C + + N ++C F+ K + L + +++L +
Sbjct: 296 E---KCME---------LLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSL 343
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 344 GKKLKSCPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCA 402
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLV-------EGLALR 295
E+ S SV L A L S +N I + D LRA L+ E L R
Sbjct: 403 RESASYSVTEVQLRFARDELDSMVNNNIRK---KDHEPLRAVCCSLINWLEANAEYLVER 459
Query: 296 GNLPIADAWLSNPALPS----DILKEAVPGNIRRAEHFLHVLRR--LVQYLRGRLETENV 349
W N L + I P I + HF VL++ + + G+ E
Sbjct: 460 DYESACKIWSGNEMLLTLHKMGITTATFP--ILQG-HFSAVLQKEEKISPIYGKEEA--- 513
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
+E PV I+A I L+ + L L D + IQ + +
Sbjct: 514 -REVPV-----ISASTQI---MLKGLFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDI 564
Query: 410 YTRGFSIIIEPFDERMPHIPDPV--LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY 467
+ +++ P +++ V L C + ++A + + Q++V+TSGTLSP+ +
Sbjct: 565 SDKN-GLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSF 623
Query: 468 PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEM 527
L + + + + G + F G LL+ +
Sbjct: 624 SSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSV 683
Query: 528 VSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA--LDNYR 585
V GI+CF SY ++++ W +G+ + K V +E Q +T L Y
Sbjct: 684 CQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYY 743
Query: 586 KACDC---GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
A GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 744 DAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPF 786
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ + V +YFPY YP Q + M + R L++K HCLLE PTG+GK++ALL
Sbjct: 8 YTIGGVKIYFPY-KAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALL 57
>gi|359491914|ref|XP_002272718.2| PREDICTED: Fanconi anemia group J protein-like [Vitis vinifera]
Length = 1255
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 140/613 (22%), Positives = 243/613 (39%), Gaps = 132/613 (21%)
Query: 70 LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDS 129
+ Y +RT ++ + + E + +T + P A L+SRK+ C N ++ A N
Sbjct: 141 IFYASRTHTQISQVIREYR-----KTAYRVPMAV-----LASRKHYCTNRKINAKAN--- 187
Query: 130 VDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG----VYTLQDLRAFGK 185
+D C+ L + + C F+N K L G + ++DL G+
Sbjct: 188 IDEECK---------LLVRDQDF-GCPEFKNMHKVKGHPSLQKGGCHEAHDIEDLVKVGQ 237
Query: 186 QQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIE 245
C Y+ AR M A +V Y Y+++P + G + +++ ++++ DEAHNI+++ +
Sbjct: 238 VVKGCAYYAARDMADNAQLVFCPYSYIINPVIRGAMELDIEG-AILILDEAHNIEDMARD 296
Query: 246 ALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEY----------NRLVEGLALR 295
A SV V L ++ E+ + DA + Y +R L R
Sbjct: 297 AGSVDVEEDVLH-------KLQTELGQLCPADAMIYQPLYEMTQDIISWIDRKKNTLEKR 349
Query: 296 GNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLV-QYLRGRLETENVEKEGP 354
W + A L+E NI ++ +L+ + ++ ++ E
Sbjct: 350 EFQHYFSCWTGDKA-----LRELQEANI--SQQSFPILQECARKAIKAAIDIE------- 395
Query: 355 VSFVASITAH-AGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTIC--DFATLVGTYT 411
S AH +G+ TL Y L + D L +Q D ++ G++T
Sbjct: 396 -----SRVAHLSGMSVITLEGLYSALSYFFSENGLHTVDYQLALQRYVKKDAGSVAGSWT 450
Query: 412 RGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLL 471
FS L C + ++ + + D SV++TSGTLSP+ + L
Sbjct: 451 CTFS-------------------LWCLNPAVVFRGIADLSLSVILTSGTLSPMHSFSSEL 491
Query: 472 --NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
F + + + + + + P++ + GK L E+
Sbjct: 492 GVQFGTCLEAPHVIDIESQ-LWAAIFSTSPGNYPLNASYKTADAYAFQDALGKSLEEIFK 550
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE----TQDVVETTL------ 579
IVP G + FF SY M+++ + W ++G ++ + K +FIE +QD E L
Sbjct: 551 IVPGGTLVFFPSYKLMEKLCSRWRETGQWSQLNEQKFLFIEPRGGSQDDFEPILKAYYES 610
Query: 580 ---------------------------ALDNYRKACDCGRGAVFFSVARGKVAEGIDFDR 612
+ DN +K +GA F +V RGKV+EGIDF
Sbjct: 611 VRRGTKPTLGRKRRTKKMDLSQSDEKESQDNSKK-----KGAAFLAVFRGKVSEGIDFSD 665
Query: 613 HYGRLVIMFGVPF 625
R VI+ G+PF
Sbjct: 666 ENARAVIIVGIPF 678
>gi|297462303|ref|XP_002702129.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein [Bos
taurus]
Length = 1232
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 142/581 (24%), Positives = 237/581 (40%), Gaps = 64/581 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 244 KIYFGTRTHKQIAQITRELQ-----RTAYSGVPMTIL----SSRDHTCVHPEVMGNFNRN 294
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-----GVYTLQDLRAF 183
C + + N ++C F+ K + L + +++L +
Sbjct: 295 E---KCME---------LLDGKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSL 342
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G++ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 343 GRKLKACPYYTARELMQNADIIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDCA 401
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
E+ S SV L A L S IN I + D LRA L+ L +
Sbjct: 402 RESASYSVTEVQLRFARDELDSMINYNIRK---KDHEPLRAVCCSLINWLEASSEHLVER 458
Query: 303 AWLSNPAL--PSDILKEAVPGNIRRAE------HFLHVLRR--LVQYLRGRLETENVEKE 352
+ S+ + S++L I A HF VL+R V + G+ E +E
Sbjct: 459 NYESSCKVWSGSEMLLNLHKMGITTATFPILQGHFSAVLQREEKVPSIHGKEEA----RE 514
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
PV I+A I K L + L D D + IQ + T
Sbjct: 515 IPV-----ISASTQIMLKGLFMVLDYL--FRQNSRFAD-DYKVAIQQTYSWINQSDTTDH 566
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
G I+ + VL C + ++A + + ++V+TSGTLSP+ + L
Sbjct: 567 GLLILSKNKKRLRQKAAVRVLNFWCLNPAVAFSDINGKVWAIVLTSGTLSPMKSFSSELG 626
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
+ + + + G + F G LL+ + +
Sbjct: 627 VTFTIQLEANHVINNSQVWVGTIGSGPKGRSLCATFQHTETFEFQDEVGALLLSVCQTIS 686
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ--------DVVETTLALDNY 584
GI+CF SY ++++ W +G+ + K V +E Q ++++ Y
Sbjct: 687 QGILCFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQGGEKIDFDELLQMYYDAIKY 746
Query: 585 RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ D GA+ +V RGKV+EG+DF R V+ G+PF
Sbjct: 747 KGEKD---GALLVAVCRGKVSEGLDFSDDNARAVVTIGIPF 784
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V + FP YP Q + M + R L++K HCLLE PTG+GK++ALL ++ S
Sbjct: 7 YTIGGVKINFPC-KAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 65
Query: 63 KPENPV 68
PV
Sbjct: 66 LSGKPV 71
>gi|57640719|ref|YP_183197.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus
kodakarensis KOD1]
gi|57159043|dbj|BAD84973.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus
kodakarensis KOD1]
Length = 637
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 146/630 (23%), Positives = 261/630 (41%), Gaps = 107/630 (16%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
YFPY+N+ P Q ++ + A+ + ++E PTG GKTI++L+ + + E K+
Sbjct: 4 YFPYENLRPNQREFIELIGEAVKNGENAIVEAPTGFGKTISVLAGVLPFA---KEYGYKV 60
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
+Y RT +M++ + ELK +H + + + L SRK LC+++ L D+
Sbjct: 61 LYLARTHRQMDRVIEELKAIHRKKP--------VSGVELRSRKELCLHT-YLKQFTTDAY 111
Query: 131 DAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ-----DLRAFGK 185
+A + + C F+EN +K + + + ++ + +
Sbjct: 112 NAMV----------VCKNLKKLGKCPFYENEKKKKAEFEEVIRFFLTEPSHPAEILNYAE 161
Query: 186 QQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEAHNIDNV 242
CPY L + + + A+V+V SY Y L P + + + + +V+FDEAHN+ +
Sbjct: 162 TLELCPYDLTKRIAEKADVIVASYLYALSPSIRESLISSLGVDYSDLIVIFDEAHNLPDQ 221
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQ-EIERFKATDAGRLRAEYNRLVEGLALRGNLPIA 301
I ALS + T+ A + + EI F + L Y+ E LA R +
Sbjct: 222 AISALSDRLSIHTINRAIKEADEYREHEIANFLSILGKGLEKLYS---EKLAERD---VE 275
Query: 302 DAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEK-EGPVSFVAS 360
+A P P + + + L +V + + + +EK + P S+V
Sbjct: 276 EA----PVQPELVFTHVIEILGINERWLVKTLNEMVS-VGDAIREDRIEKGKPPRSYVGR 330
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ L+L L + D++L + T +G S
Sbjct: 331 VGEF-----------------LLLWLSLIGRDDYLFLM----------TREKGMS----- 358
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
L+L D S A+ + D QS + SGTL+P++ + ++ +
Sbjct: 359 ------------LELVALDPSRALSFIKD-VQSAIFMSGTLTPLEAFRDVMGIENARMKK 405
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKL---LVEMVSIVPDGIVC 537
F P ++ R + Q+ V+ R D + Y K+ +VE V ++P +
Sbjct: 406 F----------PRMVKRENAQVLVAKDVSTRGDERSLQAYRKMVDYIVEAVKLIPKNVGV 455
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV--ETTLALDNYRKACDCGRGAV 595
F SY + +++ D +K + VFIE Q V E L + + KA G GAV
Sbjct: 456 FTASYEVLQGLLSANLD---VKLEETGRAVFIEQQGVSSRENDLMIAQF-KAHAKGNGAV 511
Query: 596 FFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
V G+ +EG D+ V++ G+P+
Sbjct: 512 LLGVMGGRNSEGQDYSGDEMNGVVLVGIPY 541
>gi|19173439|ref|NP_597242.1| ATP DEPENDENT DNA BINDING HELICASE (RAD3/XPD SUBFAMILY OF
HELICASES) [Encephalitozoon cuniculi GB-M1]
gi|19171028|emb|CAD26418.1| ATP DEPENDENT DNA BINDING HELICASE (RAD3/XPD SUBFAMILY OF
HELICASES) [Encephalitozoon cuniculi GB-M1]
Length = 619
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 140/640 (21%), Positives = 265/640 (41%), Gaps = 145/640 (22%)
Query: 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK-----PENP---- 67
+Y Q + + +R +D + PTGTGKT++LLS + Y+ + P N
Sbjct: 6 LYDVQKLLIRDARRVIDEGTAGIFSSPTGTGKTMSLLSAVIDYIGADEAGLDPRNRALEQ 65
Query: 68 -------VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+K++YCTRT ++ + + ELK L A ++ L SR+ C+N R
Sbjct: 66 ALFQGGRMKVLYCTRTHTQLTQAINELKKLE----------AGCNSVVLGSRRIYCLNER 115
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + D+V+ C++ + + C+ F+ + GV ++DL
Sbjct: 116 VCQNRSSDAVNEGCKEAVKEGLCVF------YDGCDLFDGH-----------GVLDVEDL 158
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ-KESVVVFDEAHNI 239
A G+ + CPY++++ Q ++V YQ L + G S ++ +ES+VV DEAHNI
Sbjct: 159 VAMGRNERLCPYYVSKRYSQQCDIVFLPYQLLFARE--GRKSMDIDVRESIVVVDEAHNI 216
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLP 299
+ ++ + + T ++R + ++ ++ R++ E G L
Sbjct: 217 YDSVVQMNTACILFST-------MNRCIKAMQLYRERHGRRMKRE-----------GQL- 257
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
E + +LRR+ + G E+V + V V+
Sbjct: 258 ---------------------------ETVVEILRRIKGF--GDEYCEDVGEGEGVMGVS 288
Query: 360 SITAHAGIDQKTL---------RFCYERLHSLML--TLEITDTDEFLHIQTICDFATLVG 408
AGI+ + + RL +L+I + +FL + T+ D + +
Sbjct: 289 EFLLKAGIEDFNMLEVEDYIVTSGIFRRLEGFGSNPSLQIPEISKFLGLLTVSDRSGRIF 348
Query: 409 TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYP 468
+RG ++ + DAS+ + V + +++++ GT+ P+D
Sbjct: 349 YSSRG-------------------VRFTPLDASMYFEDVLE-CRALLLAGGTMEPVDQLM 388
Query: 469 RLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMV 528
+L R F + +V+ G + F+ R P ++ + +
Sbjct: 389 SVLGKKS--PRYFSYGSVCNDFLALVVGSGPSGREIIVNFETRERPESIKDVTSSISNLS 446
Query: 529 SIVPD-GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV-ETTLALDNYRK 586
+ V D G+VCF S +Y+ GIL+E + T+ + E + + Y
Sbjct: 447 NAVKDGGMVCFLPSKAYL----------GILRERCGD---MVGTKKALYEDLITFEGY-- 491
Query: 587 ACDCGRG-AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
A + GRG + F+V G+++EG++F RL+++ GVP+
Sbjct: 492 AEEAGRGPCILFAVMGGRLSEGVNFGDGLCRLLVVVGVPY 531
>gi|395845987|ref|XP_003795698.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Otolemur garnettii]
Length = 1234
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 143/580 (24%), Positives = 238/580 (41%), Gaps = 60/580 (10%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 244 KIYFGTRTHKQIAQITKELR-----RTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 294
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP-----PGVYTLQDLRAF 183
C + + N ++C F+ K + L + +++L +
Sbjct: 295 E---KCME---------LLDGKNGKSCYFYHGVHKISDQHTLQTLQGMSKAWDIEELVSL 342
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR ++ A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 343 GKKLKACPYYTARELIGDADIIFCPYNYLLDSQIRESMDLNL-KEQVVILDEAHNIEDCA 401
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
E+ S SV L A L S +N I + D LRA L+ L I
Sbjct: 402 RESASYSVTEVQLRFARDELDSLVNNNIRK---KDHEPLRAVCCSLINWLEANSEHLIER 458
Query: 303 AWLSNPAL--PSDILKEAVPGNIRRAE------HFLHVLRR--LVQYLRGRLETENVEKE 352
+ S+ + S++L I A HF VL++ V + G+ E +E
Sbjct: 459 DYESSCKIWSGSEMLLNLHRMGITTATFPILQGHFSAVLQKEEKVSAIYGKEEA----RE 514
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
P+ I+A I K L + L D D + IQ + T +
Sbjct: 515 VPI-----ISASTQIMLKGLFMVLDYL--FRQNSRFAD-DYKIAIQQTYSWINETNTSDK 566
Query: 413 GFSIIIEPFDERMPHIPDPV--LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRL 470
+ + P +++ V L C + ++A + + +++V+TSGTLSP+ +
Sbjct: 567 NMLVALLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVRTIVLTSGTLSPMKSFSSE 626
Query: 471 LNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSI 530
L + + + + G + F G LL+ +
Sbjct: 627 LGVTFTIQLEANHVIKNSQVWVGTIGSGPKGRNLCATFQHTETFEFQDEVGALLLSVCQT 686
Query: 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA--LDNYRKAC 588
V GI+CF SY ++++ W +G+ + K V +E Q +T L Y A
Sbjct: 687 VSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQLYYDAI 746
Query: 589 DCG---RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 747 KFKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPF 786
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V + FPY YP Q + M + R L++K HCLLE PTG+GK++ALL ++ S
Sbjct: 8 YTIGGVKINFPY-KAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66
Query: 63 ---KPEN 66
KPE+
Sbjct: 67 LSGKPED 73
>gi|403274761|ref|XP_003929130.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Saimiri boliviensis boliviensis]
Length = 1252
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 147/617 (23%), Positives = 256/617 (41%), Gaps = 69/617 (11%)
Query: 36 GHC-LLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ 94
GHC T G + L+ I K + P K+ + TRT ++ + EL+ +
Sbjct: 212 GHCSRCCCSTKQGNSQESLNTIKKDHTGKSKIP-KIYFGTRTHKQIAQITRELR-----R 265
Query: 95 TRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIET 154
T + G IL SSR + C++ V+ NR+ C + + N ++
Sbjct: 266 TAYSGVPMTIL----SSRDHTCIHPEVVGNFNRNE---KCME---------LLDGKNGKS 309
Query: 155 CEFFENYEKAASAAVLPP-----GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
C F+ K + L + +++L + GK+ CPY+ AR ++Q A+++ Y
Sbjct: 310 CYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLRVCPYYTARELIQDADIIFCPY 369
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL-SRINQ 268
YLLD ++ + + KE VV+ DEAHNI++ E+ S SV L A L S +N
Sbjct: 370 NYLLDAQIRETMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNN 428
Query: 269 EIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPS--DILKEAVPGNIRRA 326
I + D LRA L+ L + + S+ + S ++L I A
Sbjct: 429 NIRK---KDHEPLRAVCYSLINWLEANSEYLVERDYESSCKIWSGNEMLLNLHKMGITTA 485
Query: 327 E------HFLHVLRR--LVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYER 378
HF VL++ + + G+ E +E P+ I+A I K L +
Sbjct: 486 TFPILQGHFSAVLQKEEKISPIYGKEEA----REVPI-----ISASTQIMLKGLFMVLDY 536
Query: 379 LHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPV--LQLS 436
L + D D + IQ + + + +++ P +++ V L
Sbjct: 537 L--FRHNSKFAD-DYKIAIQQTYSWTNQIDISDKNGWLVL-PKNKKRSRQKTAVHVLNFW 592
Query: 437 CHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLT 496
C + ++A + + +++V+TSGTLSP+ + L + + + +
Sbjct: 593 CLNPAVAFSDINGKVRTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVIKNSQVWVGTIG 652
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG 556
G + F G LL+ + V GI+CF SY ++++ W +G
Sbjct: 653 SGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLRERWLSTG 712
Query: 557 ILKEIMQHKLVFIETQ--------DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ ++ K V +E Q ++++ Y+ D GA+ +V RGKV+EG+
Sbjct: 713 LWHKLELAKTVIVEPQGGEKTDFDELLQVYYDAVKYKGEKD---GALLVAVCRGKVSEGL 769
Query: 609 DFDRHYGRLVIMFGVPF 625
DF R VI G+PF
Sbjct: 770 DFSDDNARAVITIGIPF 786
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ + V + FPY YP Q + M + R L++K HCLLE PTG+GK++ALL
Sbjct: 8 YTISGVKINFPY-KAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALL 57
>gi|50726319|dbj|BAD33894.1| putative BRCA1 interacting protein C-terminal helicase 1 [Oryza
sativa Japonica Group]
Length = 1366
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 157/703 (22%), Positives = 283/703 (40%), Gaps = 144/703 (20%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALD-----AKGHCLLEMPTGTGKTIALLSLI 56
++++ V V FPY Y Q ++M + LD + H LLE PTGTGK+++LL
Sbjct: 24 VYQVGGVPVEFPY-KPYGTQLAFMGRVIATLDRARRQGRSHALLESPTGTGKSLSLLCSA 82
Query: 57 TSYVLSKP--------------------------------------ENPVKLIYCTRTVH 78
++ P +N + Y TRT
Sbjct: 83 LAWQRHYPLRAPPAAAPDPFLHGGGFVPDDTQKQATPGVPEKATRKKNVPTIYYATRTHA 142
Query: 79 EMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRT 138
++ + + E + +Y+ R +AI L+SRK+ CVN V + N +D C+
Sbjct: 143 QITQVVREYRKT-SYRVR--------MAI-LASRKHYCVNKNVCMSGN---IDELCK--- 186
Query: 139 ASWVRALAAENPNIETCEFFENYEKAASAAVLPPG----VYTLQDLRAFGKQQGWCPYFL 194
+ + + + C ++N +K + L G V+ ++DL G++ CPYF
Sbjct: 187 -------SLLDDSAQGCPEYKNAQKLSRHPSLQIGGCYEVHDIEDLVRVGRKVKGCPYFA 239
Query: 195 ARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQ 254
A+ M + A +V Y YL+ P V + ++ + S++V DEAHNI+++ +A S V +
Sbjct: 240 AQTMAEAAQLVFCPYNYLISPIVRRAMDIDI-RGSIIVLDEAHNIEDIARDAGSFDVDEE 298
Query: 255 TLEGATRNLSRINQEIERFKATDA-GRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSD 313
+ L + QE+E +A ++ + +++GL + W+
Sbjct: 299 S-------LLFLRQELEGLVTDEAVAKIYEPLHEVIQGL---------NGWIDEQ----- 337
Query: 314 ILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG--PVSF-------VASITAH 364
GN + F H + G + ++ G PV+F +I A
Sbjct: 338 -------GNNLQKNEFEHP----ASFWTGEEAMKELKYAGITPVNFPVLQECATKAIKAA 386
Query: 365 AGIDQKTLRFCYER---LHSLMLTLEITDTDEFLHIQ----TICDFATLVGTYTRGFSII 417
+ + + + L SL +L + H + FA G + +I
Sbjct: 387 SDAESEGVHLSGGSAMTLESLFSSLSYFFAENGRHSNDYQLALQRFAKREGANVMSYDLI 446
Query: 418 IEPFDERMPHIP-DPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPV 476
I + I V+ L C + ++ + + D SV++TSGTLSP+ + L
Sbjct: 447 I--CNSVTSFIGWKCVMSLWCLNPAVVFRDIADLTLSVILTSGTLSPMGSFASELGVQFE 504
Query: 477 VSRSFKMSLTRDC-ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGI 535
+ D + VL+ G ++ + ++ G L E+ +VP G
Sbjct: 505 ACMEAPHVINADSQVFATVLSSGPTGRRLNASYRTANEYSFQDELGATLEEICRVVPGGA 564
Query: 536 VCFFVSYSYMDEIIATWNDS--------------GILKEIMQH---KLVFIETQDVVETT 578
+ FF SY+ ++++ W+ + G I+ K + +V+
Sbjct: 565 LVFFPSYNLLEKLQRRWSQTEPRGSTEELEPVLKGYYNAILGKAPPKKGRGGAKQIVKNR 624
Query: 579 LALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
+ D+ +++ GA F +V RGKV+EGIDF R+V+ F
Sbjct: 625 VTKDSSQESAK--GGAAFLAVCRGKVSEGIDFSDDKARVVVSF 665
>gi|297486418|ref|XP_002695655.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein,
partial [Bos taurus]
gi|296477040|tpg|DAA19155.1| TPA: BRCA1 interacting protein C-terminal helicase 1 [Bos taurus]
Length = 1169
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 142/581 (24%), Positives = 237/581 (40%), Gaps = 64/581 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 181 KIYFGTRTHKQIAQITRELQ-----RTAYSGVPMTIL----SSRDHTCVHPEVMGNFNRN 231
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-----GVYTLQDLRAF 183
C + + N ++C F+ K + L + +++L +
Sbjct: 232 E---KCME---------LLDGKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSL 279
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G++ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 280 GRKLKACPYYTARELMQNADIIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDCA 338
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
E+ S SV L A L S IN I + D LRA L+ L +
Sbjct: 339 RESASYSVTEVQLRFARDELDSMINYNIRK---KDHEPLRAVCCSLINWLEASSEHLVER 395
Query: 303 AWLSNPAL--PSDILKEAVPGNIRRAE------HFLHVLRR--LVQYLRGRLETENVEKE 352
+ S+ + S++L I A HF VL+R V + G+ E +E
Sbjct: 396 NYESSCKVWSGSEMLLNLHKMGITTATFPILQGHFSAVLQREEKVPSIHGKEEA----RE 451
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
PV I+A I K L + L D D + IQ + T
Sbjct: 452 IPV-----ISASTQIMLKGLFMVLDYL--FRQNSRFAD-DYKVAIQQTYSWINQSDTTDH 503
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
G I+ + VL C + ++A + + ++V+TSGTLSP+ + L
Sbjct: 504 GLLILSKNKKRLRQKAAVRVLNFWCLNPAVAFSDINGKVWAIVLTSGTLSPMKSFSSELG 563
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
+ + + + G + F G LL+ + +
Sbjct: 564 VTFTIQLEANHVINNSQVWVGTIGSGPKGRSLCATFQHTETFEFQDEVGALLLSVCQTIS 623
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ--------DVVETTLALDNY 584
GI+CF SY ++++ W +G+ + K V +E Q ++++ Y
Sbjct: 624 QGILCFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQGGEKIDFDELLQMYYDAIKY 683
Query: 585 RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ D GA+ +V RGKV+EG+DF R V+ G+PF
Sbjct: 684 KGEKD---GALLVAVCRGKVSEGLDFSDDNARAVVTIGIPF 721
>gi|67525973|ref|XP_661048.1| hypothetical protein AN3444.2 [Aspergillus nidulans FGSC A4]
gi|40743798|gb|EAA62984.1| hypothetical protein AN3444.2 [Aspergillus nidulans FGSC A4]
Length = 994
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 156/624 (25%), Positives = 254/624 (40%), Gaps = 106/624 (16%)
Query: 44 TGTG---KTIALLSLITSYVLS-KPE----NPVKLIYCTRTVHEMEKTLAELKL------ 89
T TG T+ LL + Y KPE N +K+ YC+RT ++ + +EL+
Sbjct: 163 TATGLSSSTLELLERLRKYGSKIKPEEDDENDIKIFYCSRTHSQLMQFASELRRVTMPST 222
Query: 90 ----LHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
L T +I I L SRKNLC+NSRV A N +++ C L
Sbjct: 223 LPESLRQGLTDEEEQGERIKHISLGSRKNLCINSRVAALGNPTAINERC----------L 272
Query: 146 AAENPNIET---CEFFENYEKAASAAVLP----PGVYTLQDLRAFGKQQGWCPYFLARHM 198
+ PN C + E A V ++DL GK+ G CPY+ +R
Sbjct: 273 ELQQPNTPAPLRCSYLPTEEDEAKTLSFRDHALATVKDIEDLGKLGKKLGLCPYYASR-- 330
Query: 199 VQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEG 258
VV +S + D I K VV+ DEAHN+ + SV+V TL
Sbjct: 331 ----GVVSHSERSARDALNLSI------KGHVVIIDEAHNLMDAISNIHSVTV---TLSQ 377
Query: 259 ATRNLSRINQEIERFKATDAGRLR---AEYNRLVEGLALRGNLPIADAWLSNPA-LPSDI 314
++ ++ +FK G+ R A+ RL+ +A I + S + L SD+
Sbjct: 378 LRTSIFQLTTYARKFKTRLKGKNRNYIAQVIRLISSIADHLQSLIDNKQASEGSVLSSDL 437
Query: 315 LKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEK-EGPVSFVASITAHAGIDQKTLR 373
+ I +L +YL E++ K +G + F S A+A + K+
Sbjct: 438 MAGKGADQINPY--------KLCRYLN---ESKLARKVDGYIDFSQS-KANAQAEPKSTI 485
Query: 374 FCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVL 433
+ S +L L + L T T G D L
Sbjct: 486 PVLFHIQSFLLPL-----------MNLSSEGRLFFTKTPG----------------DIQL 518
Query: 434 QLSCHDASLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLNFHP---VVSRSFKMSLTRDC 489
D + + + + ++V++ GT+SP+ D L ++ P + + S+ + +
Sbjct: 519 HYMLLDPTNHFREIVEDARAVILAGGTMSPMSDYLNHLFSYVPKDRLNTFSYGHVIPSEN 578
Query: 490 ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
+ L RG + R + + G+ ++ +PDGIV FF SY Y+ ++
Sbjct: 579 LTAHTLARGVTGCEFDFTYAGRDAEKMILDLGRTFTQLCRAIPDGIVAFFPSYEYLSRVL 638
Query: 550 ATW-------NDSGILKEIMQHKLVFIETQDVVETTLAL-DNYRKACDCGRGAVFFSVAR 601
W N + + + + K + E+++ TT L +NY + GRGA+ SV
Sbjct: 639 NIWKNAVVRENKQTLYETVEKEKQILYESRETELTTDDLLNNYANTINKGRGALLLSVVG 698
Query: 602 GKVAEGIDFDRHYGRLVIMFGVPF 625
GK++EGI+F GR V++ G+PF
Sbjct: 699 GKLSEGINFSDKLGRGVLIVGLPF 722
>gi|429854790|gb|ELA29777.1| ATP-dependent RNA helicase chl1 [Colletotrichum gloeosporioides
Nara gc5]
Length = 858
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 153/616 (24%), Positives = 251/616 (40%), Gaps = 106/616 (17%)
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK-------------ILAIGL 109
K E+ VK+ Y +RT ++ + + EL+ + P+ K + + L
Sbjct: 170 KVEDGVKIYYTSRTHSQLTQFIHELR--RPAFPSSMPPSVKPNDSEDARPDKEPVKHLPL 227
Query: 110 SSRKNLCVNSRVLAAENRDSVDAAC---RKRTASWVRALAAENPNIETCEFFENYEKAAS 166
SSR+ LC+N V +++ C +K A NI+ F + +
Sbjct: 228 SSRQKLCINPSVAKLGTISAINDRCSELQKPKAKDKCPYTLNEDNIKQTHQFRD----TA 283
Query: 167 AAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ 226
A LP ++DL GK+ CPY+ +R + A ++ Y LL + +++
Sbjct: 284 HATLP----DIEDLYHLGKKLEVCPYYASRAAIAGAEIITLPYPLLLQKNARDALGIKLE 339
Query: 227 KESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---A 283
+VV+ DEAHNI + + ++ L A + L ++RF G R
Sbjct: 340 G-NVVIVDEAHNIMDAVANVYASEIKLTELRRARQMLGVY---VKRFGKKLKGENRVMVG 395
Query: 284 EYNRLVEGLALRGNLPIADAWLSNP---ALPSDILKEAVPGNIRRAEHFLHV-LRRLVQY 339
+ R++EGL W+S P I+ V + R + + L +L+QY
Sbjct: 396 QVGRVIEGLT---------EWMSGAMTLKAPHGIVDSKV---LLRCKGVDQINLFKLIQY 443
Query: 340 LRGRLETENVEK-EGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQ 398
++ E++ K E V+ V A A + R LH L FL
Sbjct: 444 IQ---ESKLAYKIESYVAHVEEEIAQANAGKAPPRSSTPVLHIL---------SSFL--- 488
Query: 399 TICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITS 458
+L + G I E P I L LS + A + ++V++
Sbjct: 489 -----ISLTNLSSEG-RIFYEKTSSNSPDIQLSYLLLS---PTHAFSSIATSARAVILAG 539
Query: 459 GTLSPIDLYPRLLNFHPVVSRSFKMSLT--------RDCICPMVLTRGSDQLPVSTKFDM 510
GT+SP + Y L P +S S +L+ C+ + T+ VS+ F+
Sbjct: 540 GTMSPFEDYKDHL--FPYLSDSKLTTLSCGHVIPPSNLCVWTLAGTKPGPNRDVSSTFEF 597
Query: 511 ----RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW------NDSGILKE 560
RSD + G ++ + ++VPDG+V FF SY Y+DE++A W I
Sbjct: 598 SFQRRSDKTMVSQLGLAILNICNVVPDGVVVFFPSYGYLDEVVAVWETKSPGESKSIWDR 657
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKAC-----DCG------RGAVFFSVARGKVAEGID 609
+ + K F ET+ + L+ Y KA C RGA+ SV GK++EGI+
Sbjct: 658 MRERKEAFKETRGGSSDEV-LEAYSKAILGDGEPCAGAAPKPRGAILLSVVGGKMSEGIN 716
Query: 610 FDRHYGRLVIMFGVPF 625
F GR VI+ G+P+
Sbjct: 717 FSDRLGRCVIIIGLPY 732
>gi|259485564|tpe|CBF82692.1| TPA: DNA helicase, putative (AFU_orthologue; AFUA_3G05590)
[Aspergillus nidulans FGSC A4]
Length = 841
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 156/624 (25%), Positives = 254/624 (40%), Gaps = 106/624 (16%)
Query: 44 TGTG---KTIALLSLITSYVLS-KPE----NPVKLIYCTRTVHEMEKTLAELKL------ 89
T TG T+ LL + Y KPE N +K+ YC+RT ++ + +EL+
Sbjct: 163 TATGLSSSTLELLERLRKYGSKIKPEEDDENDIKIFYCSRTHSQLMQFASELRRVTMPST 222
Query: 90 ----LHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
L T +I I L SRKNLC+NSRV A N +++ C L
Sbjct: 223 LPESLRQGLTDEEEQGERIKHISLGSRKNLCINSRVAALGNPTAINERC----------L 272
Query: 146 AAENPNIET---CEFFENYEKAASAAVLP----PGVYTLQDLRAFGKQQGWCPYFLARHM 198
+ PN C + E A V ++DL GK+ G CPY+ +R
Sbjct: 273 ELQQPNTPAPLRCSYLPTEEDEAKTLSFRDHALATVKDIEDLGKLGKKLGLCPYYASR-- 330
Query: 199 VQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEG 258
VV +S + D I K VV+ DEAHN+ + SV+V TL
Sbjct: 331 ----GVVSHSERSARDALNLSI------KGHVVIIDEAHNLMDAISNIHSVTV---TLSQ 377
Query: 259 ATRNLSRINQEIERFKATDAGRLR---AEYNRLVEGLALRGNLPIADAWLSNPA-LPSDI 314
++ ++ +FK G+ R A+ RL+ +A I + S + L SD+
Sbjct: 378 LRTSIFQLTTYARKFKTRLKGKNRNYIAQVIRLISSIADHLQSLIDNKQASEGSVLSSDL 437
Query: 315 LKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEK-EGPVSFVASITAHAGIDQKTLR 373
+ I +L +YL E++ K +G + F S A+A + K+
Sbjct: 438 MAGKGADQINPY--------KLCRYLN---ESKLARKVDGYIDFSQS-KANAQAEPKSTI 485
Query: 374 FCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVL 433
+ S +L L + L T T G D L
Sbjct: 486 PVLFHIQSFLLPL-----------MNLSSEGRLFFTKTPG----------------DIQL 518
Query: 434 QLSCHDASLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLNFHP---VVSRSFKMSLTRDC 489
D + + + + ++V++ GT+SP+ D L ++ P + + S+ + +
Sbjct: 519 HYMLLDPTNHFREIVEDARAVILAGGTMSPMSDYLNHLFSYVPKDRLNTFSYGHVIPSEN 578
Query: 490 ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
+ L RG + R + + G+ ++ +PDGIV FF SY Y+ ++
Sbjct: 579 LTAHTLARGVTGCEFDFTYAGRDAEKMILDLGRTFTQLCRAIPDGIVAFFPSYEYLSRVL 638
Query: 550 ATW-------NDSGILKEIMQHKLVFIETQDVVETTLAL-DNYRKACDCGRGAVFFSVAR 601
W N + + + + K + E+++ TT L +NY + GRGA+ SV
Sbjct: 639 NIWKNAVVRENKQTLYETVEKEKQILYESRETELTTDDLLNNYANTINKGRGALLLSVVG 698
Query: 602 GKVAEGIDFDRHYGRLVIMFGVPF 625
GK++EGI+F GR V++ G+PF
Sbjct: 699 GKLSEGINFSDKLGRGVLIVGLPF 722
>gi|47212324|emb|CAF91262.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1212
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 151/321 (47%), Gaps = 63/321 (19%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L+ VTV FP+ Y Q YM ++ L+ K + +LE PTGTGKT+ LL
Sbjct: 6 LDGVTVQFPF-APYACQREYMRKVIECLEQKTNGVLESPTGTGKTLCLLCSALAWREQLK 64
Query: 54 SLITSYVLSKP--------------------------ENPVKLIYCTRTVHEMEKTLAEL 87
I+S ++ + + K+IY +RT ++ + + EL
Sbjct: 65 DKISSKMMERRLGGETSHSTGLASWGSAAADGEAAYYTDIPKIIYASRTHSQLAQVIKEL 124
Query: 88 KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAA 147
K N R KI +G SR+ LC+N V+ E+ CRK+ ++
Sbjct: 125 K---NTAYR-----PKICVLG--SREQLCINPEVMRQESSHVKVHMCRKKVST------- 167
Query: 148 ENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVY 207
+C F+ N E++++ L + ++DL FG ++ CPY+L+R + Q A+V+
Sbjct: 168 -----RSCPFYNNTEESSTDRDLTHSILDVEDLVKFGNKKRVCPYYLSRSLKQEADVIFM 222
Query: 208 SYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRIN 267
Y YL+DPK + E+ +VV+FDEAHN++ C E+ S + + A + R+
Sbjct: 223 PYNYLVDPKSRRAHNIELNG-AVVIFDEAHNLEKTCEESTSFDLTPYEVASAIAAVDRL- 280
Query: 268 QEIERFKATDAGRLRAEYNRL 288
+E+ KAT AG AE L
Sbjct: 281 -LVEQVKATGAGGTLAEDGSL 300
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 97/237 (40%), Gaps = 65/237 (27%)
Query: 454 VVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR-- 511
V++TSGTLSP+D + + V + RD I V+ RG D + +S+ FD R
Sbjct: 457 VILTSGTLSPLDSFTSEMRIDFPVRLENGHVIERDQIFVSVVDRGPDGVQLSSAFDRRFL 516
Query: 512 --SD-----------------------PGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
D P + G + + +VP G++ FF S+ M+
Sbjct: 517 LHPDMLHLTGSQAQLRSLSLFFCGRFLPENMASLGNTVANLSRVVPHGLLVFFPSFPLME 576
Query: 547 EII------------ATWNDS---------GILKEIMQHKLVFIE--------------- 570
+++ A+W +S G + I K +F+E
Sbjct: 577 KVLDFWRVSGDGGSPASWCESSSPLAPQAHGHAERIDALKPIFVEPKGKANFSEASGRAE 636
Query: 571 TQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
T + + +D Y + +G FF+V RGK +EG+DF +GR V++ G+PF
Sbjct: 637 TDSLFSISQVMDGYYNKVNDPQTKGGSFFAVCRGKASEGLDFADAFGRAVVITGLPF 693
>gi|164657658|ref|XP_001729955.1| hypothetical protein MGL_2941 [Malassezia globosa CBS 7966]
gi|159103849|gb|EDP42741.1| hypothetical protein MGL_2941 [Malassezia globosa CBS 7966]
Length = 891
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 137/606 (22%), Positives = 250/606 (41%), Gaps = 85/606 (14%)
Query: 64 PENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNS---R 120
PE K+ Y +RT ++ + + E+K + R + +I L SRK++C+++ R
Sbjct: 230 PETRPKIFYASRTHSQLAQLINEVKRTPFGKARE-----PVRSISLGSRKHMCLHADVRR 284
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAV------LPPGV 174
V A D+++ C + +N + C F ++ + V
Sbjct: 285 VGATSGTDAMNERCLE---------LIQNKKGQRCPFLPPHDAMGQVTMDRYRDHALAQV 335
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLL--DPKVAGIISKEMQKESVVV 232
+ +++L GK CPYF RH + A +V Y LL D + A +S E ES+++
Sbjct: 336 HDIEELVQLGKDLRICPYFGTRHSARNAELVTLPYNLLLQHDAREALQLSLE---ESILL 392
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEI-ERFKATDAGRLR-------AE 284
DEAHN+ + + + + + ++ AT + Q +R K + +R A
Sbjct: 393 IDEAHNLIDTILATYTTELTQAHIDEATAQVDVYLQRFSKRLKGVNEEHIRILQVILHAM 452
Query: 285 YNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFL---HVLRRLVQYLR 341
+ E + ++ D L+ PA + + N+ R E +L + R++ Y
Sbjct: 453 QSFCAEICKNKQHMWQRDTSLTLPAFMAHLGGSVDQINLVRLERWLKDTRIARKIGGYAN 512
Query: 342 GRLE----TENVEKEGPVSFVASIT-AHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLH 396
E +EN P + + +T A ++ L C ++ +L ++E
Sbjct: 513 KVWERAQTSENPSTWRPATRPSCMTRAMHSLEAFLLALCNRSMNGCILV-----SNE--- 564
Query: 397 IQTICDFATLVGTYTRGFS---IIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQS 453
+ I T + G +++ P D A +P+ ++
Sbjct: 565 -RAISGGRGTDNTVSGGVRFKYLLLHPGD--------------------AFEPLVADARA 603
Query: 454 VVITSGTLSPI-DLYPRLLNFHPVVSRSF---KMSLTRDCICPMVLTRGSDQLPVSTKFD 509
+V+T GT+ PI D +L + P S + RD + V+ G + +
Sbjct: 604 IVLTGGTMEPISDFRTQLFSNLPDERLSLFSCGHIVPRDHVLGAVVPVGPKGHTLEFTHE 663
Query: 510 MRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFI 569
P + G +L +IVP G+V FF SY+ +D +A W +G+L + + K VF+
Sbjct: 664 AWQRPCLLDELGNVLSNYSNIVPHGMVVFFPSYASLDMTVAQWRKTGMLDRLSKRKQVFM 723
Query: 570 ETQDVVETTLALDNYRKACD-----CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
E +D + L Y +GA+ +V K++EGI+F R V+M G+P
Sbjct: 724 EPKDAKDVDTILRQYASTVSTPPPTSPKGAMLLAVVGAKLSEGINFQDELARCVVMVGLP 783
Query: 625 FQYTLS 630
F ++ S
Sbjct: 784 FPHSQS 789
>gi|116179420|ref|XP_001219559.1| hypothetical protein CHGG_00338 [Chaetomium globosum CBS 148.51]
gi|88184635|gb|EAQ92103.1| hypothetical protein CHGG_00338 [Chaetomium globosum CBS 148.51]
Length = 979
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 138/569 (24%), Positives = 237/569 (41%), Gaps = 103/569 (18%)
Query: 109 LSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAA 168
LSSR+ LC+N V+ + +++ C + S + + PN E + ++ AA A
Sbjct: 160 LSSRQKLCINPSVVRLGSLSAINDRCTELQQSKTKDKCSFMPNTENLKQAHDFRDAALAT 219
Query: 169 VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
V ++DL GK+ CPY+ +R + A V+ Y LL + +++
Sbjct: 220 V-----PDIEDLHRIGKELQVCPYYASRTAIPGAEVITLPYPLLLQKNARDALGIKLEG- 273
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---AEY 285
+VV+ DEAHN+ + + + L A + LS ++RF G R A+
Sbjct: 274 NVVIIDEAHNVMDAVANVYAAEICLSELRRARQMLSIY---VKRFGKKLKGENRVMIAQV 330
Query: 286 NRLVEGLA--------LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLV 337
++VE L+ ++G+ I D P+ +LK R A+ L +L+
Sbjct: 331 GKVVESLSACLNEQLNIKGDQGIVD--------PNTVLK------ARGADQI--NLYQLI 374
Query: 338 QYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHI 397
+Y++ +E S +HA +++ + + + + LH
Sbjct: 375 KYIQDSKLAYKIE---------SYVSHAENQEESSSSAHGK---------PSPSTPVLH- 415
Query: 398 QTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVIT 457
T+ F T + + I E P I L LS +A + ++V++
Sbjct: 416 -TLVSFLTALTNLSSEGRIFSEKLATTPPDIKLSYLLLSPTNA---FSSIASSARAVILA 471
Query: 458 SGTLSPID-----LYPRL-------LNFHPVVSRS--FKMSLTRDCICPMVLTRGSDQLP 503
GT+SP + L+P L+ V+ S F +L T +D
Sbjct: 472 GGTMSPFEDYKAHLFPSFPTDKITTLSCGHVIPSSNLFGWTLASTTPT-TPGTTNADSFE 530
Query: 504 VSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN------DSGI 557
S F R +PG+ R G L+ + S+VPDG+V FF S+ Y+DE++A W +
Sbjct: 531 FS--FQKRREPGMIRQLGLALLNICSVVPDGVVVFFPSHGYLDEVVAAWQTQETPTQPPL 588
Query: 558 LKEIMQHKLVFIET-----QDVVE-------------TTLALDNYRKACDCGR---GAVF 596
+ K VF ET +DV++ +L ++A R GA+
Sbjct: 589 WDRLAGKKAVFRETKGGVSEDVLQQYSDAILFPAAAAAPPSLGGSQQAATKPRRPGGALL 648
Query: 597 FSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
SV GK++EGI+F GR V++ G+P+
Sbjct: 649 LSVVGGKLSEGINFSDRLGRCVVVVGLPY 677
>gi|242025010|ref|XP_002432919.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212518428|gb|EEB20181.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 852
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 141/611 (23%), Positives = 258/611 (42%), Gaps = 100/611 (16%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
+K+ C+RT ++ + + EL+ + KI L+SR+N C+N VL ++
Sbjct: 205 LKIFLCSRTHSQLSQLVRELQ-------KSPYNDLKIRVASLASRQNYCINENVLKLKHL 257
Query: 128 DSVDAACRK----------RTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
++ C++ +T+ L + N C ++ + L + +
Sbjct: 258 PLINEKCQELHDKNKSKTTKTSENGEVLKRQKANT-GCPYYNHSNIEDLKHTLLSEILDV 316
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP---KVAGIISKEMQKESVVVFD 234
+ L G + CPY+ +R+ V A V++ Y +L K GI K+SVV+ D
Sbjct: 317 EQLLHKGNKFNGCPYYASRYAVDDAQVIIVPYNTILHDSTRKACGI----NLKDSVVIID 372
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEI-ERFKATDAGRLRAEYNRLVEGLA 293
EAHN+ + S S+ L + L + ++ +RF A + + + +V+ L
Sbjct: 373 EAHNLLDAIGNIYSCSISGYDLAASYSQLVQYKEKYSDRFSAINLLHIN-QLIFIVKKLF 431
Query: 294 LR--GNLPIADAWLSNPA--LPSDILKEAVPGNIRRAEHFLHVLR-----RLVQYLRGRL 344
++ G + +SN + + L E +P +F +L +V LRG +
Sbjct: 432 MKIGGKDGVHPNAVSNDKTEITLETLAEFIPSTEIDTINFYKILEFITKSNIVNKLRGFV 491
Query: 345 ET--------ENVEKEGPVSFVASITAHAG------------IDQKTLRFCYERLHSLML 384
+ E +G +F+ ++A G I+ L LHSL
Sbjct: 492 LKYKPSVILHKKEENKGVSAFLKKLSAKKGDFEEKPEAEDEIIEGNPLFNVTTFLHSL-- 549
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
T+ L + +C VGT T F +++ P H D
Sbjct: 550 ------TNHCLDGRIVCTINKTVGTSTLKF-LLLNP----ASHFED-------------- 584
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNF----HPVVSRSFKMS--LTRDCICPMVLTRG 498
+ +SV++ GT+ PI + L + P + F ++++ I P+++ G
Sbjct: 585 --IVKNARSVILAGGTMQPISEFTDQLFYLAGGSPDRLKVFTCGHVVSKENILPIIVPSG 642
Query: 499 SDQLPVSTKFDM----RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND 554
P FD R + + G+LLV + ++VP GIVCFF SY Y + +
Sbjct: 643 ----PTGKVFDFSYQNRKNVEILDELGRLLVNISNVVPAGIVCFFPSYEYENFSYQHFEK 698
Query: 555 SGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHY 614
+G++ ++++ K V E + + L +Y +A GA+ FSV GK++EG++F+
Sbjct: 699 TGVIMKLLKKKKVLREPKKTNKVDEVLRDYSEAVK-KTGALLFSVVGGKLSEGLNFNDDL 757
Query: 615 GRLVIMFGVPF 625
GR +I+ G+P+
Sbjct: 758 GRCIIVVGLPY 768
>gi|402899850|ref|XP_003912899.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Papio anubis]
Length = 1248
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 136/543 (25%), Positives = 222/543 (40%), Gaps = 58/543 (10%)
Query: 109 LSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAA 168
LSSR + CV+ V+ NR+ C + + N ++C F+ K +
Sbjct: 276 LSSRDHTCVHPEVVGNFNRNE---KCME---------LLDGRNGKSCYFYHGVHKISDQH 323
Query: 169 VLPP-----GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISK 223
L + +++L + GK+ CPY+ AR ++Q A+++ Y YLLD ++ +
Sbjct: 324 TLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDL 383
Query: 224 EMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLR 282
+ KE VV+ DEAHNI++ E+ S S+ L A L S +N I R D LR
Sbjct: 384 NL-KEQVVILDEAHNIEDCARESASYSITEVQLRFARDELDSMVNNNIRR---KDHEPLR 439
Query: 283 AEYNRLV-------EGLALRGNLPIADAWLSNPALPS----DILKEAVPGNIRRAEHFLH 331
A L+ E L R W N L + I P I + HF
Sbjct: 440 AVCYSLINWLEANSEYLVERDYESACKIWSGNEMLLNLHKMGITTATFP--ILQG-HFSA 496
Query: 332 VLRR--LVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEIT 389
VL++ + + G+ E +E P+ I+A I L+ + L L
Sbjct: 497 VLQKEEKISPIYGKEEA----REVPI-----ISASTQI---MLKGLFMVLDYLFRQNSRF 544
Query: 390 DTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPV--LQLSCHDASLAVKPV 447
D + IQ + + + ++I P +++ V L C + ++A +
Sbjct: 545 ADDYKIAIQQTYSWTNQIDISDKN-GLLILPKNKKHSRQKTAVRVLNFWCLNPAVAFSDI 603
Query: 448 FDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTK 507
+ Q++V+TSGTLSP+ + L V + + + G +
Sbjct: 604 NGKVQTIVLTSGTLSPMKSFSSELGVTFTVQLEANHVIKNSQVWVGTIGSGPKGRNLCAT 663
Query: 508 FDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLV 567
F G LL+ + V GI+CF SY ++++ W +G+ + K V
Sbjct: 664 FQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTV 723
Query: 568 FIETQDVVETTLA--LDNYRKACDC---GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFG 622
+E Q +T L Y A GA+ +V RGKV+EG+DF R V+ G
Sbjct: 724 IVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVVTIG 783
Query: 623 VPF 625
+PF
Sbjct: 784 IPF 786
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V +YFPY YP Q + M + R L++K HCLLE PTG+GK++ALL ++ S
Sbjct: 8 YTIGGVKIYFPY-KAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66
Query: 63 KPENPV 68
E P
Sbjct: 67 LSEKPA 72
>gi|194912339|ref|XP_001982483.1| GG12711 [Drosophila erecta]
gi|190648159|gb|EDV45452.1| GG12711 [Drosophila erecta]
Length = 859
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 149/613 (24%), Positives = 251/613 (40%), Gaps = 95/613 (15%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV----- 121
PV++ +C+RT ++ + +AEL+ + Q+ + + L SR+ LC N +V
Sbjct: 187 PVQIFFCSRTHSQLAQIVAELRKTPHGQS--------VRCVSLGSRQQLCGNPQVRRLKH 238
Query: 122 LAAENRDSVDAACRKR-----TASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT 176
+ N +D A +K S + A A + E+ A + L
Sbjct: 239 VGLMNERCLDMATKKSRPNPSKKSRLTAEANSRCPFKAAPLVESLRDLALSEPL-----D 293
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
+++L G G C Y+ +R V+ A +++ YQ LL + + K S+V+ DEA
Sbjct: 294 IEELANEGAACGGCSYYASRSAVEHAQLILLPYQLLLQKSARNQLGISL-KGSIVIVDEA 352
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIE-RFKATDAGRLRAEYNRLVEGLALR 295
HN+ + + + RQ LE A +S + + RF + ++ N+++ +R
Sbjct: 353 HNLLDSVAQLHGSEINRQQLERAKVQISCYKEHFQKRFNTKNLLKI----NQII--FIVR 406
Query: 296 GNLPIADAWLSNPALPSDILK------EAVPGNIRRAEHFLHVLR----RLVQYLRGRLE 345
L I D S +++ E NI E R R VQ R+E
Sbjct: 407 RLLKILDQRKETQPKSSSMMRTYELTAEGDFFNINLCELLDFCARTRFARKVQGHADRME 466
Query: 346 TEN--VEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL------EITDTDEFLH- 396
E E + PVS S+ H R E+ L +I D E L
Sbjct: 467 REPRPSENQPPVSTARSLILH--------RLASEQKQKEEPKLVKRKAEDIEDKAEKLQE 518
Query: 397 ----------------IQTICDFATLVGTYTRGFSIIIEPFDERMPHIP-DPVLQLSCHD 439
I+ + F + + I+++P + ++ DP Q +
Sbjct: 519 QQKPPRKPVQEAAPSPIRPLLAFLETLTSNAEDGRILLDPVGGTLKYVLLDPAEQFA--- 575
Query: 440 ASLAVKPVFDRFQSVVITSGTLSPID-----LYPRLLNFHPVVSRSFKMSLTRDCICPMV 494
+ + +++VI GT+ P L+ R + +V R + + D + P V
Sbjct: 576 ------DIVEEARAIVIAGGTMQPTQELKEQLFTRCQDR--LVERFYDHVVEDDAVLPFV 627
Query: 495 LTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND 554
++ G P+S KF R+ + + LL + +VP G+VCF SY Y+D++
Sbjct: 628 ISNGPSGAPLSFKFAHRASAEMLQELSMLLRNLCQVVPGGVVCFLPSYEYLDKVYKYLEQ 687
Query: 555 SGILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAEGIDFDR 612
SG L+ I K VF E E LDNY A GA+ SV GK++EG++F
Sbjct: 688 SGTLETIQCRKSVFREVSGSAEQL--LDNYALAIKKPASGGALLLSVVGGKLSEGLNFAD 745
Query: 613 HYGRLVIMFGVPF 625
GR V++ G+P+
Sbjct: 746 DLGRAVLVVGLPY 758
>gi|389744669|gb|EIM85851.1| DNA repair helicase [Stereum hirsutum FP-91666 SS1]
Length = 875
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 127/534 (23%), Positives = 219/534 (41%), Gaps = 61/534 (11%)
Query: 106 AIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAA 165
A+ L SRK LC+N L A+ D +D CR S P E +
Sbjct: 283 AVSLGSRKQLCINED-LRAKGGD-LDERCRDLMNSKKGHGCPYLPRDEDDMRLHDLRDQI 340
Query: 166 SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM 225
AA P + ++L + K+ CPYF +R V A +V Y LL P + +
Sbjct: 341 LAA--PKDI---EELVSVAKESRTCPYFASREAVSQAELVTMPYNLLLQPSARDALGINL 395
Query: 226 QKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEY 285
Q + V+V DEAHN+ + + +VS+ Q L+ + + +I+ + +F+ + R
Sbjct: 396 QDQ-VIVIDEAHNLISTILSLSTVSMTYQNLKDS---MDQISTYLSKFRLRLSSRHMLHL 451
Query: 286 NRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLE 345
RL L+ + W S L ++ + AV + V+R L Q +
Sbjct: 452 TRL--HTFLKAFMAFIIKWRSQQKLGNE--QHAVVMTVG------EVMRALGQNIDAVNL 501
Query: 346 TENVEKEGPVSFVASITAHAGIDQKTLR------FCYERLH---SLMLTLEITDTDEFLH 396
E E ++A++ Q + R F LH S + ++ D L
Sbjct: 502 LEIYEYLRSSKIARKVSAYSTQFQPSQRKDSESDFLKPSLHVIESFITSITQAADDGRLL 561
Query: 397 IQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVI 456
+ + D + TY C + S + + D QS+++
Sbjct: 562 LSSCADVESFSITY-------------------------QCLNPSPQFQALVDSAQSIIL 596
Query: 457 TSGTLSPI-DLYPRLLNFHPVVSRSFKMS----LTRDCICPMVLTRGSDQLPVSTKFDMR 511
GTLSP D+ +L + P SR + S + + + +++ G +
Sbjct: 597 AGGTLSPTEDIITQLFYYLPS-SRISQFSCLHIIPKSNLQALIVGYGPRNSDLKFTHSNL 655
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
S G+ G+ ++ ++ VP G+V FF SY + ++TW + + + +F+E
Sbjct: 656 STKGLIDELGQAILNLIRSVPGGVVIFFSSYKVLHMALSTWKKGHLFSALESKRELFVEP 715
Query: 572 QDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
D E LD Y A RGA+ F+V K++EG++F + R+V++ G+PF
Sbjct: 716 SDGSEVESVLDAYSLATQKPRGALLFAVIGAKLSEGLNFSDNLARMVVIVGLPF 769
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 7 DVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
D FPY Y Q M L A++ + ++E PTGTGKT++LLS +++
Sbjct: 20 DTFPIFPYPEPYNIQLDLMRHLYAAIEGRKVAIVESPTGTGKTLSLLSATFTWL 73
>gi|195469691|ref|XP_002099770.1| GE16539 [Drosophila yakuba]
gi|194187294|gb|EDX00878.1| GE16539 [Drosophila yakuba]
Length = 859
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 153/628 (24%), Positives = 258/628 (41%), Gaps = 125/628 (19%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV----- 121
PV++ +C+RT ++ + +AEL+ +T H G A + +++G SR+ LC N +V
Sbjct: 187 PVQIFFCSRTHSQLAQIVAELR-----KTPH-GQAVRCISLG--SRQQLCGNPQVRRLKH 238
Query: 122 LAAENRDSVDAACRK-----RTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT 176
+ N +D A +K S + A A + E+ A + L
Sbjct: 239 VGLMNERCLDMATKKARPNPSKKSRLSAEANSRCPFKAAPLVESLRDLALSEPL-----D 293
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
+++L + G G C Y+ +R V+ A +V+ YQ LL + + K S+V+ DEA
Sbjct: 294 IEELASEGAACGGCSYYASRSAVEHAQLVLLPYQLLLQKSARNQLGINL-KGSIVIVDEA 352
Query: 237 HNIDNVCIEALSVSVRRQTLEGA----------------TRNLSRINQEI---------- 270
HN+ + + + RQ LE A T+NL +INQ I
Sbjct: 353 HNLLDSVAQLHGSEINRQQLERAKVQISGYKEHFQKRFSTKNLLKINQIIFIVRRLLKVL 412
Query: 271 ERFKATDAGR---------------------------LRAEYNRLVEGLALRGNLPIADA 303
+R K T A R+ + R V+G A R
Sbjct: 413 DRGKETQANSSSMMRTYELTAEGDFFNIDLCELLDFCARSRFARKVQGHADR-------- 464
Query: 304 WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITA 363
+ PS+ P + R+ +L+RL E + EK PV A +
Sbjct: 465 -MEREPRPSE---NQPPVSTARS----LILQRLAS------EQKQKEKPKPVKRKAEDS- 509
Query: 364 HAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDE 423
++K F ++ E+T + I+ + F + + I+++P
Sbjct: 510 ----EEKAEEFQEQQKPPKKPVQEVTPSP----IRPLLAFLETLTSNAEDGRILLDPVGG 561
Query: 424 RMPHIP-DPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLNF--HPVVSR 479
+ +I DP Q + + + +++VI GT+ P +L +L +V
Sbjct: 562 TLKYILLDPAEQFA---------DIVEEARAIVIAGGTMQPTQELKEQLFTSCQDRLVEH 612
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
+ + D + P V++ G P+S +F R+ + + LL + +VP G+VCF
Sbjct: 613 FYNHVVADDAVLPFVISNGPSGAPLSFQFAHRASAEMLQELSMLLRNLCQVVPGGVVCFL 672
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFF 597
SY Y+D++ SG L+ I K VF E E LDNY A GA+
Sbjct: 673 PSYEYLDKVYTYLEQSGTLETIRGRKSVFREVSGSAEQL--LDNYALAIKKPASGGALLL 730
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPF 625
SV GK++EG++F GR V++ G+P+
Sbjct: 731 SVVGGKLSEGLNFADDLGRAVLVVGLPY 758
>gi|322694417|gb|EFY86247.1| DEAD-2 domain-containing protein [Metarhizium acridum CQMa 102]
Length = 891
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 135/600 (22%), Positives = 244/600 (40%), Gaps = 87/600 (14%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELK-------LLHNYQTRHLGPAAKILAIGLSSRKNLCV 117
E +K+ Y +RT ++ + + EL+ L + + + LSSR+ LC+
Sbjct: 207 EEEIKIYYTSRTHSQLSQFITELRRPKFPSSLPTSLAEEKSSVQETVKLLPLSSRQRLCI 266
Query: 118 NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
N V + +++ C + S + P E + +A A V P +
Sbjct: 267 NPSVARLGSVQAINDRCAELQQSKSTKKCSYVPKEELLSQTHQFRDSALATV--PDI--- 321
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+DL GK CPY+ +R + A ++ Y LL + +++ +VV+ DEAH
Sbjct: 322 EDLHQLGKSLAVCPYYASRSALPGAEIITLPYPLLLQRSAREALGIKLEG-NVVIIDEAH 380
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLS----RINQEIERFKATDAGRLRAEYNRLVEGLA 293
N+ + + ++ L+ L R ++++ + GR+ R+++GL
Sbjct: 381 NVMDAVANVHAAEIKLSDLQKGRGMLGVYVKRFGKKLKGVNRVNVGRV----GRVIDGLT 436
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
N +D+ + P I + F L+QY++ +E
Sbjct: 437 EWMNGAKGFKQQHGIVDANDLTR---PKGIDQINMF-----ELIQYIQESKLAYKIE--- 485
Query: 354 PVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRG 413
S+ A + + + + LH+L+ FL A L T G
Sbjct: 486 --SYAAHVESENSSGKPATKSSTPVLHTLV---------SFL--------AALTNPSTEG 526
Query: 414 FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID-----LYP 468
+ + + D L + A + ++V++ GT+SP D L+P
Sbjct: 527 RIF----YQKTSGPVQDVQLSYLLLSPTHAFSSIVSSARAVILAGGTMSPFDDYKNHLFP 582
Query: 469 RLLNFHPVVSRSFKMSLTRD--CICPMVLTR-GSDQLPVSTKFDMRSDPGVARNYGKLLV 525
L + V + S + R+ C+C + TR G S + R D + + G ++
Sbjct: 583 ALADAK-VTTLSCGHVIPRENLCVCTLTGTRPGGSSFEFS--YQRRGDQEMVKELGLAIL 639
Query: 526 EMVSIVPDGIVCFFVSYSYMDEIIATWN---------DSGILKEIMQHKLVFIETQDVVE 576
+ S+VPDG+V FF SY Y++E++A W+ + I + K+VF ET+
Sbjct: 640 NICSLVPDGVVVFFPSYGYLEEVVAVWSRRALGDKNPQTTIWDRLQTRKMVFRETKGCSS 699
Query: 577 TTLALDNYRKAC--DCGR---------GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ L Y +A + GR GA+ SV GK++EGI+F GR V++ G+P+
Sbjct: 700 DEV-LQEYTQAILGNGGRTTGMVKGKGGALLLSVVGGKMSEGINFSDRLGRCVMVVGLPY 758
>gi|409095652|ref|ZP_11215676.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus zilligii
AN1]
Length = 636
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 154/635 (24%), Positives = 267/635 (42%), Gaps = 117/635 (18%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
YFPY+ + P Q ++ + A+ + ++E PTG GKTI++L+ + Y E K+
Sbjct: 3 YFPYETLRPHQREFIELVNEAVRRGSNLIIEAPTGFGKTISVLAGVLPYA---KEAGYKV 59
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
+Y RT +M++ + ELK + + + L SRK LC+++ L D+
Sbjct: 60 LYLARTHRQMDRVIEELK--------EINKKTPVSGVELRSRKELCLHN-YLVEYTSDAY 110
Query: 131 DA--ACRKRTASWVRALAAENPNIETCEFFENYEKAAS-----AAVLPPGVYTLQDLRAF 183
A C+ S C+F+EN +K A G ++ +
Sbjct: 111 TAMVVCKNLKKSG------------KCQFYENEKKKREEFEEVAKFFLSGPAHPVEILDY 158
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEAHNID 240
+ CPY L R + + A+V+V SY Y++ P + + + + +V+FDEAHN+
Sbjct: 159 AETLELCPYDLTRKVAEKADVIVASYLYMISPGIREAFLEGLGLTYSDLIVIFDEAHNLP 218
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
+ I ALS S+ T ++R +E E ++ + + + + GL L +
Sbjct: 219 DQAISALSDSISIHT-------VNRAIKEAEEYREHEIANFLSIFGK---GLELLYSEKF 268
Query: 301 ADAWLSN-PALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRG------RLETENVEK-E 352
+D ++ P P I A P N+ + RRL++ L G + + +EK +
Sbjct: 269 SDREVTEVPLSPESIF--AHPMNVLGIDA-----RRLIKTLNGMVTVGDSIREDRIEKNQ 321
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
P S++ + L+L + D++L L+G +
Sbjct: 322 PPRSYIGRVGEF-----------------LLLWFSLIGRDDYLF---------LMGR-EK 354
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
G S L+L D S A+ V D +S + SGTL+P++ + ++
Sbjct: 355 GLS-----------------LELVALDPSKALTFVRD-VKSAIFMSGTLTPLEAFRDVMG 396
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
+ + F + R+ +V VST+ + RS V R +VE V I+P
Sbjct: 397 IENSMLKKFPRMVKRENALVLVAR------DVSTRGEERS-LQVYRRMVDYIVEAVKIIP 449
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV--ETTLALDNYRKACDC 590
+ F SY + +++ N L+E K VFIE Q E L + + KA
Sbjct: 450 KNVGVFTASYEVLQGLLSA-NLQVKLEET--GKAVFIEKQGASSKENDLLVAQF-KAHSK 505
Query: 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GAV V G+ +EG D+ V++ G+P+
Sbjct: 506 TNGAVLLGVMGGRNSEGQDYSGDEMNGVVLVGLPY 540
>gi|334322387|ref|XP_001363088.2| PREDICTED: Fanconi anemia group J protein [Monodelphis domestica]
Length = 1179
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 140/579 (24%), Positives = 231/579 (39%), Gaps = 60/579 (10%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V NR+
Sbjct: 195 KIFFGTRTHKQIAQITRELR-----RTSYSGVRMTIL----SSRDHTCVHPEVTGNFNRN 245
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP--PGV---YTLQDLRAF 183
C + + N ++C F K + L PG+ + ++DL +
Sbjct: 246 E---KCME---------LMDGKNGKSCYFNHGVHKMSEQQALQTFPGMCRAWDIEDLVSL 293
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR ++ A++V Y YLLD ++ + + KE +++ DEAHNI+
Sbjct: 294 GKKLKACPYYAARELMLDADIVFCPYNYLLDSQIRESMDINL-KEQIIILDEAHNIEECA 352
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAE----YNRLVEG---LALR 295
E+ S SV L A L S ++ I + D LRA N L E L R
Sbjct: 353 RESASYSVTEIQLRFARDELDSMVSNNIRK---KDHEPLRAVCYSLLNWLQENSKHLEER 409
Query: 296 GNLPIADAWLSNPALPSDILKEAVPGNIRR--AEHFLHVLRRLVQY--LRGRLETENVEK 351
W N + S + K + HF VL++ ++ L G+ + + +
Sbjct: 410 DYESSCKVWSGNEMI-SHLYKMGITAATFPILQGHFTAVLQKEEKFMLLNGKEQVKEIPI 468
Query: 352 EGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYT 411
P + Q L+ + L L D + IQ + +
Sbjct: 469 VSPST------------QIMLKGLFMVLDYLFRQNSRFADDYKVAIQRTYSWTQIDIPDK 516
Query: 412 RGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLL 471
GF I + + VL C + ++A + + +++V+TSGTLSP++ + L
Sbjct: 517 NGFFAIPKNKKRSRQKMAVHVLNFWCLNPAVAFLDISSKVRTIVLTSGTLSPMNSFSSEL 576
Query: 472 NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIV 531
+ + + + G + F G LL+ + V
Sbjct: 577 GVTFAIQLEANHVIQNSQVWVGTIGSGPKGRNLCATFQHTETFAFQDEVGALLLSVCQTV 636
Query: 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTL--ALDNYRKACD 589
GI+CF SY ++++ W +G+ + K V E + L Y A
Sbjct: 637 GQGILCFLPSYKLLEKLKERWIHTGLWNNLELVKTVITEPPRAEKAAFDEVLQVYYDAIK 696
Query: 590 CG---RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
C GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 697 CKGDRDGALLMAVCRGKVSEGLDFSDENARAVITIGIPF 735
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
V ++FP YP Q + M + R L++K HCLLE PTG+GK++ALL
Sbjct: 13 VKIHFPC-KAYPSQLALMNSIVRGLNSKQHCLLESPTGSGKSLALL 57
>gi|426238589|ref|XP_004013233.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Ovis aries]
Length = 1234
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 143/583 (24%), Positives = 239/583 (40%), Gaps = 67/583 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 243 KIYFGTRTHKQIAQITRELQ-----RTAYSGVPMTIL----SSRDHSCVHPEVIGNFNRN 293
Query: 129 SVDAACRKRTASWVRALAA-ENPNIETCEFFENYEKAASAAVLPP-----GVYTLQDLRA 182
R + + N ++C F+ K + L + +++L +
Sbjct: 294 E-------------RCMELLDGKNGKSCYFYHGVHKISDQHTLQTFQGMHKAWDIEELVS 340
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G++ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 341 LGRKLKACPYYTARELMQDADIIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDC 399
Query: 243 CIEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIA 301
E+ S SV L A L S IN I + D LRA L+ L +
Sbjct: 400 ARESASYSVTEVQLRFARDELDSMINYNIRK---KDHEPLRAVCCSLINWLEASSEHLVE 456
Query: 302 DAWLSNPAL--PSDILKEAVPGNIRRAE------HFLHVLRR--LVQYLRGRLETENVEK 351
+ S+ + S++L I A HF VL+R V + G+ E +
Sbjct: 457 RDYESSCKVWSGSEMLLNLHKMGITTATFPILQGHFSAVLQREEKVPSIHGKEEA----R 512
Query: 352 EGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYT 411
E PV I+A I K L + L D D + IQ + T
Sbjct: 513 EIPV-----ISASTQIMLKGLFMVLDYL--FRQNSRFAD-DYKVAIQQTYSWINQTDTTD 564
Query: 412 RGFSIIIEPFDERMPHIPD-PVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRL 470
+ +I+ +R VL C + ++A + + ++V+TSGTLSP+ +
Sbjct: 565 KNGLLILSKNKKRSRQKAAVHVLNFWCLNPAVAFSDINGKVWTIVLTSGTLSPMKSFSSE 624
Query: 471 LNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSI 530
L + + + + G + F G LL+ +
Sbjct: 625 LGVTFTIQLEANHVINNSQVWVGTIGSGPKGRNLCATFQHTETFEFQDEVGALLLSVCQT 684
Query: 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ--------DVVETTLALD 582
V GI+CF SY ++++ W +G+ + K V +E Q ++++
Sbjct: 685 VSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKIDFDELLQVYYDAI 744
Query: 583 NYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y+ D GA+ +V RGKV+EG+DF R V+ G+PF
Sbjct: 745 KYKGEKD---GALLVAVCRGKVSEGLDFSDDNARAVVTIGIPF 784
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V + FP YP Q + M + R L++K HCLLE PTG+GK++ALL ++ S
Sbjct: 6 YTIGGVKINFPC-KAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 64
Query: 63 KPENPV 68
PV
Sbjct: 65 LSGKPV 70
>gi|449328753|gb|AGE95029.1| ATP dependent DNA binding helicase [Encephalitozoon cuniculi]
Length = 619
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 137/630 (21%), Positives = 263/630 (41%), Gaps = 125/630 (19%)
Query: 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK-----PENP---- 67
+Y Q + + +R +D + PTGTGKT++LLS + Y+ + P N
Sbjct: 6 LYDVQKLLIRDARRVIDEGTAGIFSSPTGTGKTMSLLSAVIDYIGADEAGLDPRNRALEQ 65
Query: 68 -------VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+K++YCTRT ++ + + ELK L A ++ L SR+ C+N R
Sbjct: 66 ALFQGGRMKVLYCTRTHTQLTQAINELKKLE----------AGCNSVVLGSRRIYCLNER 115
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + D+V+ C++ + + C+ F+ + GV ++DL
Sbjct: 116 VCQNRSSDAVNEGCKEAVKEGLCVF------YDGCDLFDGH-----------GVLDVEDL 158
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
A G+ + CPY++++ Q ++V YQ L + + ++ +ES+VV DEAHNI
Sbjct: 159 VAMGRNERLCPYYVSKRYSQQCDIVFLPYQLLFTREGRKSMGIDV-RESIVVVDEAHNIY 217
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
+ ++ + + T ++R + ++ ++ R++ E LR
Sbjct: 218 DSVVQMNTACILFST-------MNRCIKAMQLYRERHGRRMKREGQLETVVEILRRIKGF 270
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D + G++ E + V L L+ +E N+ + V
Sbjct: 271 GDEYC---------------GDVGEGEGVMGVSEFL---LKAGIEDFNMLE------VED 306
Query: 361 ITAHAGIDQKTLRFCYERLHSLML--TLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
+GI + RL +L+I + +FL + T+ D + + +RG
Sbjct: 307 YIVTSGI--------FRRLEGFGSNPSLQIPEISKFLGLLTVSDRSGRIFYSSRG----- 353
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
++ + DAS+ + V + +++++ GT+ P+D +L
Sbjct: 354 --------------VRFTPLDASMYFEDVLE-CRALLLAGGTMEPVDQLMSVLGKKS--P 396
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD-GIVC 537
R F + +V+ G + F+ R P ++ + + + V D G+VC
Sbjct: 397 RYFSYGSICNDFLALVMGSGPSGREIIVNFETRERPESIKDVTSSISNLSNAVKDGGMVC 456
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV-ETTLALDNYRKACDCGRG-AV 595
F S +Y+ GIL+E + T+ + E + + Y A + GRG +
Sbjct: 457 FLPSKAYL----------GILRERCGD---MVGTKKALYEDLITFEGY--AEEAGRGPCI 501
Query: 596 FFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
F+V G+++EG++F RL+++ GVP+
Sbjct: 502 LFAVMGGRLSEGVNFGDGLCRLLVVVGVPY 531
>gi|74203152|dbj|BAE26258.1| unnamed protein product [Mus musculus]
Length = 527
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
>gi|342878343|gb|EGU79689.1| hypothetical protein FOXB_09802 [Fusarium oxysporum Fo5176]
Length = 864
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 132/592 (22%), Positives = 244/592 (41%), Gaps = 89/592 (15%)
Query: 68 VKLIYCTRTVHEMEKTLAELK-----------LLHNYQTRHLGPAAKILAIGLSSRKNLC 116
+K+ Y +RT ++ + + EL+ L + +T+ A K+L LSSR+ LC
Sbjct: 204 IKIYYTSRTHSQLSQFITELRRPSFPPSLPTSLAKSEETKT--EAVKLLP--LSSRQRLC 259
Query: 117 VNSRVLAAENRDSVDAACRK----RTASWVRALAAENPNIETCEFFENYEKAASAAVLPP 172
+N V + +++ C + ++ + E+ +T +F + ++ A LP
Sbjct: 260 INPTVSRLGSVQAINDRCSELQQPKSGQKCPFVPKEDLLSQTHQF-----RDSALATLP- 313
Query: 173 GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
++DL GK CPY+ +R + A ++ Y LL + +++ SVV+
Sbjct: 314 ---DIEDLHQLGKSLSVCPYYASRTALPGAEIITLPYPLLLQKSARDALGVKLEG-SVVI 369
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGATRNLS----RINQEIERFKATDAGRLRAEYNRL 288
DEAHNI + + ++ L L + ++++ + GR+ R+
Sbjct: 370 IDEAHNIMDAVANVHAAEIKLSDLRRGRAMLGVYVKKFGKKLKGVNRVNIGRV----GRV 425
Query: 289 VEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETEN 348
++GL+ + + P+D+ + P I + F L+QY++
Sbjct: 426 IDGLSEWMDGALKFKQEHGIVDPNDLTR---PKGIDQINMF-----ELIQYIQESKLAFK 477
Query: 349 VEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVG 408
+E S+++ + + + KT R LH+L+ L + + +
Sbjct: 478 IE-----SYISHVESE-DTNSKTPRSSSPVLHTLVSFL--------IAFTNLSSEGRIFY 523
Query: 409 TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID--- 465
+G + PD L + A + ++VV+ GT+SP D
Sbjct: 524 QKIKGLA-------------PDIQLSYLLLSPTYAFSSIASSARAVVLAGGTMSPFDDYK 570
Query: 466 --LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLP-VSTKFDMRSDPGVARNYGK 522
L+P L + + S + + +C L P F R D + G
Sbjct: 571 DHLFPSL-EPEKITTLSCGHVIPPENLCVWTLASSRPGAPPFEFSFQKRGDTEMITQLGL 629
Query: 523 LLVEMVSIVPDGIVCFFVSYSYMDEIIATW-----NDSGILKEIMQHKLVFIETQDVVET 577
++ + S+VPDG+V FF SY Y+DE++ W N + K +F E++
Sbjct: 630 AILNLCSLVPDGVVIFFPSYGYLDEVVTVWQKSQGNAQPTWDRLASRKALFKESRGASSD 689
Query: 578 TLALDNYRKAC----DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ L Y A G+GA+ SV GK++EGI+F GR VI+ G+P+
Sbjct: 690 EV-LQEYSDAILGEKSNGKGALLLSVVGGKMSEGINFSDRLGRCVIVIGLPY 740
>gi|38707240|gb|AAR27238.1| DEAH helicase isoform 6 [Mus musculus]
Length = 1128
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + + V + ++ +
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 512 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 572 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 632 DFSDMNGRGVIVTGLPY 648
>gi|38707234|gb|AAR27235.1| DEAH helicase isoform 2 [Mus musculus]
Length = 1203
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + + V + ++ +
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 512 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 572 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 632 DFSDMNGRGVIVTGLPY 648
>gi|262263449|ref|NP_001160140.1| regulator of telomere elongation helicase 1 isoform 5 [Mus
musculus]
Length = 1128
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + + V + ++ +
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 512 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 572 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 632 DFSDMNGRGVIVTGLPY 648
>gi|262263443|ref|NP_001160137.1| regulator of telomere elongation helicase 1 isoform 2 [Mus
musculus]
gi|229891754|sp|Q0VGM9.2|RTEL1_MOUSE RecName: Full=Regulator of telomere elongation helicase 1
gi|148878220|gb|AAI45659.1| Rtel1 protein [Mus musculus]
gi|219519260|gb|AAI44979.1| Rtel1 protein [Mus musculus]
Length = 1203
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + + V + ++ +
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 512 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 572 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 632 DFSDMNGRGVIVTGLPY 648
>gi|38707232|gb|AAR27234.1| DEAH helicase isoform 1 [Mus musculus]
Length = 1209
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + + V + ++ +
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 512 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 572 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 632 DFSDMNGRGVIVTGLPY 648
>gi|402467806|gb|EJW03051.1| DNA repair helicase (rad3) [Edhazardia aedis USNM 41457]
Length = 704
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 151/647 (23%), Positives = 265/647 (40%), Gaps = 137/647 (21%)
Query: 39 LLEMPTGTGKTIALLSLITSYVL-------------SKPEN--PVKLIYCTRTVHEMEKT 83
L+E PTGTGKT ++L + SY+ SK N K+ CTRT ++ +
Sbjct: 37 LIESPTGTGKTYSILCSVLSYLSNTKSFKDSRDTKDSKENNNRKPKIFICTRTHKQISQM 96
Query: 84 LAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVR 143
L L R L +I LSSR LC+N V A +R+ AC ++
Sbjct: 97 LDSL--------RKLSDVPQIAV--LSSRTQLCINQIVKIASDRND---AC-------LK 136
Query: 144 ALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFAN 203
+ +N C++FEN + A L + +++L GK CPYF R + A+
Sbjct: 137 LIKKKN----GCKYFENTDSLAQN--LSSKIMDIEELAKAGKTMAGCPYFAMRKLQATAD 190
Query: 204 VVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
++ Y YL+DP + ++ E+ K +VV+ DEAHNI++ C A S + +
Sbjct: 191 IIFAPYNYLVDPSIRASLNIEL-KNAVVIVDEAHNIEDFCRSAGS-------FQATSELF 242
Query: 264 SRINQEIERFKATDAGRLRAEYNRLVEGL----------ALRGNLPIADAWLSNPALPSD 313
I EI++ +LV G+ +RG L I + S
Sbjct: 243 VIIIDEIKK--------------KLVNGMIAPEIVAHLQTIRGFLLIFTQFPSKNGSA-- 286
Query: 314 ILKEAVPGNIRRAEHFLHVLRRLVQYLRG--RLETENVEKEGPVSFVASITAHAGIDQKT 371
K + G I + +++ H +L + ++ + + ++A + KT
Sbjct: 287 --KHDMKGKIGKFDNYSHQFSNKHNFLSSDKKFSVQSQMNKSKTFPQSKVSAKNNENVKT 344
Query: 372 LRFCYERLHSLMLTLE-ITDTDEFLHIQTICDFATLVG-TYTRGFSIIIEPFDERMPHIP 429
R E L S+ + E + + L+ + ++ L+ +Y + S ++ + + H P
Sbjct: 345 GREIIEFLESMNIKKEMVLLLKQSLNALSDENYRDLISPSYIKLMSSLVYVLEHILFHSP 404
Query: 430 DPV---LQLSCHDASLAV-----------KPVFDRFQSVVITSGTLSPIDLYPRLLNFHP 475
D L++S +S ++ KP +SV++ SGTL P + L F
Sbjct: 405 DCYAFQLKISETSSSFSINFWLLDPAVIFKPFACAAKSVILLSGTLKPFESLRSELGF-- 462
Query: 476 VVSRSFKMS-----LTRDC-ICPMVLTRGS------DQLPVSTKFDMRSDPG-----VAR 518
SFK + + +D IC ++ +G + S F+ + +
Sbjct: 463 ----SFKNAVEAPHVIKDTNICVSIIKKGHLGKELIGKYGDSESFEYLDQIKHILLMIKK 518
Query: 519 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETT 578
N GK GI+ F SY++++ K + ++ E++ E
Sbjct: 519 NLGK---------AGGILVFVPSYTFLE---------NFQKRSTNIENIYFESKSAAEFG 560
Query: 579 LALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L ++K D + V RG+ AEG+DF ++ R+V+ G+P+
Sbjct: 561 KILRKFKKDADTSV-PICMCVYRGRAAEGMDFKDNHARVVVALGIPY 606
>gi|38707236|gb|AAR27236.1| DEAH helicase isoform 3 [Mus musculus]
Length = 1164
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + + V + ++ +
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 512 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 572 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 632 DFSDMNGRGVIVTGLPY 648
>gi|38707238|gb|AAR27237.1| DEAH helicase isoform 5 [Mus musculus]
Length = 1170
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + + V + ++ +
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 512 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 572 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 632 DFSDMNGRGVIVTGLPY 648
>gi|262263441|ref|NP_001001882.3| regulator of telomere elongation helicase 1 isoform 1 [Mus
musculus]
Length = 1209
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + + V + ++ +
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 512 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 572 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 632 DFSDMNGRGVIVTGLPY 648
>gi|50510779|dbj|BAD32375.1| mKIAA1088 protein [Mus musculus]
Length = 1211
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 8 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 66
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 67 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 126
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 127 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 171
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 172 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 224
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 225 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 280
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 281 INQVLEEQARVTQQGELQQEF 301
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + + V + ++ +
Sbjct: 454 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQL 513
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 514 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 573
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 574 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 633
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 634 DFSDMNGRGVIVTGLPY 650
>gi|262263447|ref|NP_001160139.1| regulator of telomere elongation helicase 1 isoform 4 [Mus
musculus]
gi|219521615|gb|AAI44978.1| Rtel1 protein [Mus musculus]
Length = 1164
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + + V + ++ +
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 512 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 572 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 632 DFSDMNGRGVIVTGLPY 648
>gi|91080377|ref|XP_975038.1| PREDICTED: similar to fanconi anemia group J protein [Tribolium
castaneum]
Length = 750
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C A+ + DR V++TSGTL+P+ L V + D +
Sbjct: 411 VLNFWCFSPGFAMNMLMDRNIHCVILTSGTLAPLKPLISELELEIGVRIENPHIVKGDQV 470
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
C +L++G D P+++ F+ RS+P ++ G ++ ++ ++PDG++ FF SY M + I
Sbjct: 471 CVKILSKGPDMEPLNSNFENRSNPKYLQSLGLVISNLIRVIPDGVLIFFPSYVIMQKTIE 530
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDN-YRKACDCG-RGAVFFSVARGKVAEGI 608
W + G I + K ++IE +D +E A+ Y K D GA+F V RGKV+EG+
Sbjct: 531 HWQNDGTWDSINRTKPIYIEPKDKIEFATAMSEYYAKIQDPSYSGAIFMGVCRGKVSEGL 590
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR V + G+P+
Sbjct: 591 DFADINGRAVFITGLPY 607
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 141/283 (49%), Gaps = 51/283 (18%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPEN- 66
V V FP+ Y Q YM ++ L+ + + +LE PTGTGKT++LL +++ ++ E
Sbjct: 9 VPVKFPFAP-YDIQTKYMEKVIDCLENRQNGILESPTGTGKTLSLLCASLAWLEARREKF 67
Query: 67 -----------PV---KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSR 112
P+ ++IY +RT ++ + + E+K HL A L SR
Sbjct: 68 AAQPKKCDDSPPITLPRIIYASRTHTQLSQAMQEMK---RTAYNHLK------ACVLGSR 118
Query: 113 KNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP 172
+C++ V+ +N CR + + C++++ E+A+ +PP
Sbjct: 119 DQMCIDPEVIQEKNASFKVNLCRAKVKR------------KQCKYYQRIERASH---VPP 163
Query: 173 ----GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
+ ++D+ G++ +CPY +AR + ++VV Y YLLDP+ SK M E
Sbjct: 164 VSDLNIIDIEDVVKLGRECDFCPYHMARELKNRSDVVFMPYNYLLDPRT----SKNMDVE 219
Query: 229 ---SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQ 268
++++FDEAHNI+ +C +++SV ++ ++ A ++ +N+
Sbjct: 220 IFGNIIIFDEAHNIEKICEDSVSVQIKSSDVDSAVEDVESVNE 262
>gi|262263445|ref|NP_001160138.1| regulator of telomere elongation helicase 1 isoform 3 [Mus
musculus]
Length = 1170
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + + V + ++ +
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 512 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 572 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 632 DFSDMNGRGVIVTGLPY 648
>gi|270006398|gb|EFA02846.1| regulator of telomere elongation helicase 1 [Tribolium castaneum]
Length = 1338
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C A+ + DR V++TSGTL+P+ L V + D +
Sbjct: 999 VLNFWCFSPGFAMNMLMDRNIHCVILTSGTLAPLKPLISELELEIGVRIENPHIVKGDQV 1058
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
C +L++G D P+++ F+ RS+P ++ G ++ ++ ++PDG++ FF SY M + I
Sbjct: 1059 CVKILSKGPDMEPLNSNFENRSNPKYLQSLGLVISNLIRVIPDGVLIFFPSYVIMQKTIE 1118
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDN-YRKACDCG-RGAVFFSVARGKVAEGI 608
W + G I + K ++IE +D +E A+ Y K D GA+F V RGKV+EG+
Sbjct: 1119 HWQNDGTWDSINRTKPIYIEPKDKIEFATAMSEYYAKIQDPSYSGAIFMGVCRGKVSEGL 1178
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR V + G+P+
Sbjct: 1179 DFADINGRAVFITGLPY 1195
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C + + D+ V++TSGTL+P+ L + V + D +
Sbjct: 195 VLSYWCFSPGFGMNMLLDQGVHCVILTSGTLAPLKPLISELELNVGVRIENPHIVKGDQV 254
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
C +LT+G D P++ + R +P + G++++ ++ I+P G++ FF SY M +
Sbjct: 255 CVKILTKGPDGEPLNCNYQNRDNPNYLMSLGQVVLNLIRIIPHGVLIFFPSYPIMQKCQQ 314
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDN-YRKACDCG-RGAVFFSVARGKVAEGI 608
W +SGI I + K +F+E +D T A+ Y K D +GA+F V RGKV+EG+
Sbjct: 315 YWQESGIWDGINKIKAIFVEPKDKNSFTFAMSEYYSKVKDPNYKGAIFMGVCRGKVSEGL 374
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR V + G+P+
Sbjct: 375 DFADSNGRAVFIIGLPY 391
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 104/207 (50%), Gaps = 35/207 (16%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
++IY +RT ++ + + E+K HL A L SR +C++ V+ +N
Sbjct: 672 RIIYASRTHTQLSQAMQEMK---RTAYNHLK------ACVLGSRDQMCIDPEVIQEKNAS 722
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP----GVYTLQDLRAFG 184
CR + + C++++ E+A+ +PP + ++D+ G
Sbjct: 723 FKVNLCRAKVKR------------KQCKYYQRIERASH---VPPVSDLNIIDIEDVVKLG 767
Query: 185 KQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE---SVVVFDEAHNIDN 241
++ +CPY +AR + ++VV Y YLLDP+ SK M E ++++FDEAHNI+
Sbjct: 768 RECDFCPYHMARELKNRSDVVFMPYNYLLDPRT----SKNMDVEIFGNIIIFDEAHNIEK 823
Query: 242 VCIEALSVSVRRQTLEGATRNLSRINQ 268
+C +++SV ++ ++ A ++ +N+
Sbjct: 824 ICEDSVSVQIKSSDVDSAVEDVESVNE 850
>gi|328772350|gb|EGF82388.1| hypothetical protein BATDEDRAFT_22849 [Batrachochytrium
dendrobatidis JAM81]
Length = 996
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 115/215 (53%), Gaps = 28/215 (13%)
Query: 430 DPVLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYP---------RLLNFHPVVSR 479
D +L C ++ +A++ + + +S+V+ SGTLSP+D + RL N H +
Sbjct: 388 DILLSFWCFNSGVAMQELKRMKVRSIVVASGTLSPLDGFSDEMGIPFPHRLENTHVIDQS 447
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
+S V+T+GS +P+ST + R + +G ++E IVPDG++ FF
Sbjct: 448 QVYIS---------VVTKGSQNIPISTAYKSRETNNSTKEFGNAIIEFAKIVPDGMLVFF 498
Query: 540 VSYSYMDEIIATW----ND---SGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR 592
SYS M+ I+ W ND I + I + K +E+++ E LA+ ++ + D +
Sbjct: 499 TSYSIMNTCISVWKQPSNDLISKSIWESISELKYPIMESRNQQEFVLAMKSFEERIDQKK 558
Query: 593 G--AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+FF++ RG+V+EGIDF GR V+++G+P+
Sbjct: 559 WPPPIFFAICRGRVSEGIDFSDRKGRAVVIYGIPY 593
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 119/269 (44%), Gaps = 60/269 (22%)
Query: 4 KLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL----LSLITSY 59
++ + V FP+ YP+Q + M + AL + L+E PTGTGKT+ L L+ ++Y
Sbjct: 20 EINRIAVQFPFQP-YPQQNALMTTIINALQKSENALVESPTGTGKTLCLLCSTLAWRSTY 78
Query: 60 VLSKPE--------------------------------NPVKLIYCTRTVHEMEKTLAEL 87
+L + E P ++ + +RT ++ + ++EL
Sbjct: 79 MLWRKEAMRSETERDTLVLDQLSMQAFGSMHSDDRPIGKPPQIFFASRTHSQLSQAISEL 138
Query: 88 KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAA 147
+ N R+ A +G SR +C+N V +N AS +++
Sbjct: 139 R---NTAYRN----AVCTVVG--SRDQMCINPAVAQVKN---------TLRASLCKSMVQ 180
Query: 148 ENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVY 207
+ +TC + E + A + ++DL FG+++ CPY++++ + A+++
Sbjct: 181 K----QTCSYHAESEGLHNHAAATALIMDIEDLVVFGRERKACPYYMSKAIQPRADIIFL 236
Query: 208 SYQYLLDPKVAGIISKEMQKESVVVFDEA 236
Y YL+D + ++ S+++FDEA
Sbjct: 237 PYNYLVDRNSRNSQNFSLE-NSIIIFDEA 264
>gi|148675458|gb|EDL07405.1| regulator of telomere elongation helicase 1 [Mus musculus]
Length = 1273
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + + V + ++ +
Sbjct: 439 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQL 498
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 499 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 558
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 559 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 618
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 619 DFSDMNGRGVIVTGLPY 635
>gi|358383392|gb|EHK21058.1| hypothetical protein TRIVIDRAFT_59546 [Trichoderma virens Gv29-8]
Length = 872
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 133/592 (22%), Positives = 243/592 (41%), Gaps = 76/592 (12%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLL--------HNYQTRHLGPAAKILAIGLSSRKNLC 116
E +K+ Y +RT ++ + + EL+ + + + + LSSR+ LC
Sbjct: 201 EEKIKIYYTSRTHSQLSQFITELRRPVFPSSLPPSVAKGSDVSSTEPVKLLPLSSRQKLC 260
Query: 117 VNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT 176
+N V + +++ C + + + P E + +A A LP
Sbjct: 261 INPSVARLGSVQAINDRCTELQQAKSSTKCSFVPKEELLSQTHQFRDSA-LATLP----D 315
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
++DL GK CPY+ +R + A ++ Y LL + +++ +VV+ DEA
Sbjct: 316 IEDLHLLGKSLSICPYYASRVALPGAEIITLPYPLLLQRSAREALGIKLEG-NVVIIDEA 374
Query: 237 HNI----DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGL 292
HNI NV L +S R+ + + R ++++ + GR+ R+++GL
Sbjct: 375 HNILDAISNVHAAELQLSDLRRGRQMLGVYVKRFGKKLKGINRVNVGRV----GRVIDGL 430
Query: 293 ALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHV-LRRLVQYLRGRLETENVEK 351
+ WL + P ++ R + + + L+QY++ +E
Sbjct: 431 S---------EWLEGALKLKNEHGIVDPNDLTRHKGIDQINIYELIQYIQESKLAYKIE- 480
Query: 352 EGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYT 411
S+VA + + + L + ++++ I T+ +G+
Sbjct: 481 ----SYVAHVESEGENKKPGLSKAGTPVLHMLVSFLIALTN--------------LGSEG 522
Query: 412 RGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID-----L 466
R F + + D L + A + ++V++ GT+SP L
Sbjct: 523 RIF------YQKTQGATADVKLTYLLLSPTHAFSSIASSARAVILAGGTMSPFQDYKDQL 576
Query: 467 YPRLLNFHPVVSRSFKMSLTRDCICPMVL-TRGSDQLPVSTKFDMRSDPGVARNYGKLLV 525
+P L N V S S + + +C L + ++ P F R + + G ++
Sbjct: 577 FPTLDNTK-VTSLSCGHVIPAENLCVWTLASTNTESPPFEFSFKHRGNKEMMNQLGLAIL 635
Query: 526 EMVSIVPDGIVCFFVSYSYMDEIIATW------NDSGILKEIMQHKLVFIETQ-DVVETT 578
+ +IVPDG+V FF SY Y+DEIIA W + + K VF +T+ + E
Sbjct: 636 NVCNIVPDGVVVFFPSYGYLDEIIAVWQQRQGGSSQTTWDRLQARKFVFRDTKGESSEEV 695
Query: 579 L-----ALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L A+ R A D GA+ SV GK++EGI+F GR V++ G+P+
Sbjct: 696 LRDYSEAILGTRPAGDKHTGALLLSVVGGKMSEGINFSDRLGRCVMVVGLPY 747
>gi|348567428|ref|XP_003469501.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein-like
[Cavia porcellus]
Length = 1209
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 142/584 (24%), Positives = 235/584 (40%), Gaps = 70/584 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 245 KIYFGTRTHKQIAQITRELR-----KTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 295
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-----GVYTLQDLRAF 183
C + + N ++C F+ K + + +++L +
Sbjct: 296 E---KCME---------LLDGKNGKSCYFYHGVNKISDQHTFQALQGMHKAWDIEELVSL 343
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G++ CPY+ AR + + A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 344 GRKLKACPYYTARELTEGADIIFCPYNYLLDAQIRESMDINL-KEQVVILDEAHNIEDCA 402
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLV-------EGLALR 295
E+ S SV L A L S ++ I + D LRA L+ E L R
Sbjct: 403 RESASYSVTEVQLRFARDELDSMVSNNIRK---RDHEPLRAVCCSLINWLEANTEHLVER 459
Query: 296 GNLPIADAWLSNPALPS----DILKEAVPGNIRRAEHFLHVLRR--LVQYLRGRLETENV 349
W N L + I P I + HF VL++ V + G+ ET V
Sbjct: 460 DYESSCKIWTGNEMLLNLYKMGITAATFP--ILQG-HFSSVLQKEEKVSPIYGKEETVEV 516
Query: 350 EKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
P+ I+A I K L + L D D + IQ +
Sbjct: 517 ----PI-----ISASTQIMLKGLFMVLDYL--FRQNSRFAD-DYKIAIQQTYSWTHHTDM 564
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
+ ++ I VL C + ++A + R +++V+TSGTLSP++ +
Sbjct: 565 SDKSEFFVLPKNKRSRQKIAVHVLNFWCLNPAVAFSDINGRVRTIVLTSGTLSPMNSFSS 624
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
L + + + + G + F G LL+ +
Sbjct: 625 ELGVTFTIQLEANHVINNSQVWVGTIGSGPKGRNLCATFQHIETFEFQDEVGALLLSVCQ 684
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ--------DVVETTLAL 581
V GI+CF SY ++++ W +G+ + K V +E Q ++++
Sbjct: 685 TVGQGILCFLPSYKLLEKLKERWISTGLWHNLELVKTVIVEPQRGEKTDFDELLQVYYDA 744
Query: 582 DNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
YR D GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 745 IKYRGEKD---GALLVAVCRGKVSEGLDFSDDNARAVITIGIPF 785
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V + FP YP Q + M + R L+++ HCLLE PTG+GK++ALL ++ S
Sbjct: 8 YTIGGVKINFPC-KAYPSQLAMMNCIVRGLNSRQHCLLESPTGSGKSLALLCSALAWQQS 66
Query: 63 KPENPVKL---------IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRK 113
PV + C T H T +++ N +T H + + R
Sbjct: 67 LSGKPVDEGLNKKAEVPLSCCCTCHSKSSTHSDV----NQETSHHFSSPGTPLPERNGRS 122
Query: 114 NLCVNS 119
++C NS
Sbjct: 123 SICQNS 128
>gi|405976070|gb|EKC40591.1| Putative ATP-dependent RNA helicase DDX11 [Crassostrea gigas]
Length = 921
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 137/644 (21%), Positives = 246/644 (38%), Gaps = 148/644 (22%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
++ YC+RT ++ + + E+ + Y G ++L++G SR+N+CVN V +
Sbjct: 242 TRIYYCSRTHSQLAQFVREI-IKSPY-----GSNTRVLSLG--SRQNMCVNDEVRKLNSL 293
Query: 128 DSVDAAC-----------RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT 176
++ C K+ + + C F++ + V
Sbjct: 294 SMMNDMCLDLQKNKSKGTEKKESDEAVQKKRKKLGSNGCPFYKQETMEDLGNQILTEVTD 353
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
++ + G++ CPY+ +R + A VVV Y LL + ++ ++V+ DEA
Sbjct: 354 MEQIVISGRRMKACPYYTSRLSLPLAEVVVLPYNILLHKAMREASGIRLEG-NIVLIDEA 412
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRG 296
HN+ SV + GA LS+ + ++ +F++ RL+A+
Sbjct: 413 HNLLETINAVYSVMIT-----GA--QLSKAHSQLSQFRS----RLKAK------------ 449
Query: 297 NLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVS 356
N+ + L VL L+++L GR + + E S
Sbjct: 450 -------------------------NLLYVKQILFVLNCLLRFLEGRTDNKKQRSEKSES 484
Query: 357 FVASIT---AHAGIDQ----KTLRFCYERLHSLMLT------------------------ 385
V ++ + +G D K L++C + S L
Sbjct: 485 KVLTVNQFLSDSGFDNINLFKILQYCRKSQISKKLNGFVEKYANCEVQIADKPKENVGIS 544
Query: 386 ---LEITDTDEFL------------------------HIQTICDFATLVGTYTRGFSIII 418
EI T E L HI+ FA+L G ++
Sbjct: 545 GFLKEIAQTKENLVEETQTTDNTRQSEKAVVMRSPLAHIEGF--FASLTSADKDGRIVLT 602
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLL------- 471
R + + L+ + ++ K V + +SVV+ GT+ P++ + + L
Sbjct: 603 -----RHTLLKESTLKFLQMNPAVHFKDVLSQARSVVVAGGTMQPVEEFKQQLFYAAGIG 657
Query: 472 --NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
N H S + D + + + G + F R + + G ++ + +
Sbjct: 658 PENIHEY---SCGHVIPSDHLLALAMKSGPLGVDFDFTFSSRENSALLNELGLVISNVCN 714
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD 589
I+P G+VCFF SY Y + WN SGIL ++ + K +F E + + L Y K+
Sbjct: 715 IIPGGVVCFFPSYKYQHLVYQHWNKSGILAKLEKKKKIFQEPKLSSQVEQVLGEYSKSIQ 774
Query: 590 ---CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
G GA+ V GK++EGI+F GR VIM G+P+ +S
Sbjct: 775 KGVKGTGAILLCVVGGKMSEGINFSDDLGRCVIMVGMPYPNIMS 818
>gi|346975762|gb|EGY19214.1| fanconi anemia group J protein [Verticillium dahliae VdLs.17]
Length = 838
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 135/540 (25%), Positives = 223/540 (41%), Gaps = 86/540 (15%)
Query: 109 LSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAA 168
LSSR+ LC+N V + + +++ C + + P E + A A
Sbjct: 240 LSSRQKLCINPAVSRLKTQSAINDRCAELQQPKSKNKCPYVPKEENLNKTHQFRDTAHA- 298
Query: 169 VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
LP ++DL GK CPY+ +R + ++ Y LL + +++
Sbjct: 299 TLP----DIEDLFHLGKSLEVCPYYASRTAIAGTEIITLPYPLLLQKTAREALGIKLEG- 353
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRL 288
++V+ DEAHNI + + +R L+ A L ++RF +L+ E NR+
Sbjct: 354 NIVIVDEAHNIMDAVANVYASEIRLGELKRARLMLGVY---VKRF----GKKLKGE-NRV 405
Query: 289 VEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETEN 348
+ G +G I DA ++L+ I L +L+QY++
Sbjct: 406 MVGQPEQG---IVDA--------KELLRSKGIDQIN--------LFKLIQYIQTSKLAYK 446
Query: 349 VEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVG 408
+E S+VA + ++ R LH+ + FL +L
Sbjct: 447 IE-----SYVAYVEEDDS-NKAAPRSSTPVLHTFV---------SFL--------VSLTN 483
Query: 409 TYTRGFSIIIEPFDERMPH-IPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID-- 465
+ G F +++P PD L + A + ++V++ GT+SP D
Sbjct: 484 LSSEG-----RIFYQKLPGAAPDIQLSYLLLSPTHAFSSIATSARAVILAGGTMSPFDDY 538
Query: 466 ---LYPRLLNFHPVVSR-SFKMSLTRDCICPMVLTRGSDQLPVST---KFDMRSDPGVAR 518
L+P L R + + C+ + +R D P ST F RSD +
Sbjct: 539 RAHLFPYLPEPKLTTLRCGHVIPPSNLCVRTLAASRAGD--PNSTFEFSFQRRSDKAMVN 596
Query: 519 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG------ILKEIMQHKLVFIETQ 572
G ++ M ++VPDGIV FF SY Y+DE++A W + I + Q K VF E++
Sbjct: 597 QLGLAILNMCAVVPDGIVVFFPSYGYLDEVVAAWETTAAGESTPIWTRMQQRKAVFKESK 656
Query: 573 DV-VETTLALDNYRKACDCG------RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
E LAL + D RGA+ SV GK++EGI+F GR V++ G+P+
Sbjct: 657 GASSEEVLALYSEAILGDGTSDAPKPRGALLLSVVGGKMSEGINFSDRLGRAVMVVGLPY 716
>gi|307103171|gb|EFN51433.1| hypothetical protein CHLNCDRAFT_140146 [Chlorella variabilis]
Length = 121
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 64/82 (78%), Gaps = 5/82 (6%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F+LE +TVYFPY IYPEQ+ YMLEL DAKGHCLLEMPTG GKT+ LLSLITSY
Sbjct: 1 MRFQLEGLTVYFPYHFIYPEQHQYMLEL----DAKGHCLLEMPTGMGKTVTLLSLITSYQ 56
Query: 61 LSKPENPVKLIYCTRTVHEMEK 82
L PE KLIYCTRTV EMEK
Sbjct: 57 LPHPEV-GKLIYCTRTVPEMEK 77
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 26/33 (78%)
Query: 216 KVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
KV+ + S E ++E VVVF EAHNIDNVCIE LS
Sbjct: 77 KVSQMESCEFERECVVVFVEAHNIDNVCIEKLS 109
>gi|81872267|sp|Q6H1L8.1|RTEL1_MUSSP RecName: Full=Regulator of telomere elongation helicase 1
gi|38707220|gb|AAR27228.1| DEAH helicase isoform 2 [Mus spretus]
Length = 1203
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 142/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT + + +
Sbjct: 65 DAISSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQPTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 106/199 (53%), Gaps = 7/199 (3%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYP--RLLNFHPVVSRSFKMSLTRD 488
VL C S +++ V +++++TSGTL+P+ + + + F PV + + + ++
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEKQIPF-PVCLENPHI-IDKN 509
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++
Sbjct: 510 QLWVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKS 569
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAE 606
+ W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +E
Sbjct: 570 LEFWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASE 629
Query: 607 GIDFDRHYGRLVIMFGVPF 625
G+DF GR VI+ G+P+
Sbjct: 630 GLDFSDMNGRGVIVTGLPY 648
>gi|46452191|gb|AAS98192.1| DEAH helicase isoform 1 [Mus spretus]
Length = 1209
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 142/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT + + +
Sbjct: 65 DAISSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQPTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 106/199 (53%), Gaps = 7/199 (3%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYP--RLLNFHPVVSRSFKMSLTRD 488
VL C S +++ V +++++TSGTL+P+ + + + F PV + + + ++
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEKQIPF-PVCLENPHI-IDKN 509
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++
Sbjct: 510 QLWVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKS 569
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAE 606
+ W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +E
Sbjct: 570 LEFWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASE 629
Query: 607 GIDFDRHYGRLVIMFGVPF 625
G+DF GR VI+ G+P+
Sbjct: 630 GLDFSDMNGRGVIVTGLPY 648
>gi|449300032|gb|EMC96045.1| hypothetical protein BAUCODRAFT_514453 [Baudoinia compniacensis
UAMH 10762]
Length = 831
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 138/589 (23%), Positives = 248/589 (42%), Gaps = 93/589 (15%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK--------ILAIGLSSRKNLCVNSR 120
K+ +C+RT ++ + + EL+ + + G AK + + L SRKNLC+N +
Sbjct: 196 KIYFCSRTHSQLSQFVRELRRVQLPPSMPPGAEAKLDEHVHEAVKQVPLGSRKNLCINPK 255
Query: 121 VLAAENRDSVDAAC--RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
V+ ++ +++ C ++T + P+ + + ++ A A + ++
Sbjct: 256 VIKLGDQTAINERCVELQQTKTPAEHRCPYLPSKDNEDLVLDFRDHALARI-----RDIE 310
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
DL G + G CPY+ +R + A +V Y LL + ++ + VVV DEAHN
Sbjct: 311 DLAEVGARLGICPYYASRTAIGAAELVTLPYPLLLQKSARDALGISLRGQ-VVVIDEAHN 369
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGL------ 292
+ + S + +E R+ S + ++RF+ G R ++V L
Sbjct: 370 LASAVEGIYSAKISDMLVE---RSKSSMLIYLQRFRNRLKGANRVYVTQVVRVLDSLLSF 426
Query: 293 -ALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRG-----RLET 346
A N P + L + + V NI + HFL V +L + + G ++
Sbjct: 427 FASLLNAPRTSGTVEASRLLAGKGVDQV--NISKLIHFLTV-SKLARKVEGYASHLTIKQ 483
Query: 347 ENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATL 406
++ + + PV A DT H+Q ATL
Sbjct: 484 DSADNKSPVENTA------------------------------DTPALTHVQAF--LATL 511
Query: 407 VGTYTRG-FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID 465
V + G FS IE LQ D + + + D ++V++ GT+SP+D
Sbjct: 512 VNPSSDGRFSWSIETGRRE--------LQYMLLDPAEHFRGIVDETRAVILAGGTMSPMD 563
Query: 466 LY-PRLLNFHPVVSRSFKMSLTRDC---ICP---MVLTRGSD-QLPVSTKFDMRSDPGVA 517
Y RL + P ++ T C I P +V T +D + + + R+D
Sbjct: 564 DYQERLFPYLPSLT-------TFSCGHLIPPSNLLVRTIATDAKGTIELSYKSRNDATAV 616
Query: 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVET 577
R G L+++ + V G+V F SY ++ ++ W+ ++ + Q K VF +++ +
Sbjct: 617 R-IGDALLKVATYVQGGLVVFLPSYGFLQQLYDCWHAHSMIARLEQIKAVFWDSR-TMSA 674
Query: 578 TLALDNYRKAC-DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y +A +GA+ SV GK++EGI+F GR V++ G+PF
Sbjct: 675 EAVFKAYTEAIYTSAKGAILLSVLGGKLSEGINFSDDLGRCVVVVGLPF 723
>gi|222642047|gb|EEE70179.1| hypothetical protein OsJ_30256 [Oryza sativa Japonica Group]
Length = 1456
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 149/683 (21%), Positives = 268/683 (39%), Gaps = 158/683 (23%)
Query: 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKP----------------------------- 64
+ H LLE PTGTGK+++LL ++ P
Sbjct: 15 GRSHALLESPTGTGKSLSLLCSALAWQRHYPLRAPPAAAPDPFLHGGGFVPDDTQKQATP 74
Query: 65 ---------ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNL 115
+N + Y TRT ++ + + E + +Y+ R +AI L+SRK+
Sbjct: 75 GVPEKATRKKNVPTIYYATRTHAQITQVVREYRKT-SYRVR--------MAI-LASRKHY 124
Query: 116 CVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG-- 173
CVN V + N +D C+ + + + + C ++N +K + L G
Sbjct: 125 CVNKNVCMSGN---IDELCK----------SLLDDSAQGCPEYKNAQKLSRHPSLQIGGC 171
Query: 174 --VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KE 228
V+ ++DL G++ CPYF A+ M + A +V Y YL+ P I+ + M +
Sbjct: 172 YEVHDIEDLVRVGRKVKGCPYFAAQTMAEAAQLVFCPYNYLISP----IVRRAMDIDIRG 227
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDA-GRLRAEYNR 287
S++V DEAHNI+++ +A S V ++ L + QE+E +A ++ +
Sbjct: 228 SIIVLDEAHNIEDIARDAGSFDVDEES-------LLFLRQELEGLVTDEAVAKIYEPLHE 280
Query: 288 LVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETE 347
+++GL + W+ GN + F H + G +
Sbjct: 281 VIQGL---------NGWIDEQ------------GNNLQKNEFEHP----ASFWTGEEAMK 315
Query: 348 NVEKEG--PVSF-------VASITAHAGIDQKTLRFCYER---LHSLMLTLEITDTDEFL 395
++ G PV+F +I A + + + + L SL +L +
Sbjct: 316 ELKYAGITPVNFPVLQECATKAIKAASDAESEGVHLSGGSAMTLESLFSSLSYFFAENGR 375
Query: 396 HIQ----TICDFATLVGTYTRGFSIIIEPFDERMPHIP-DPVLQLSCHDASLAVKPVFDR 450
H + FA G + +II + I V+ L C + ++ + + D
Sbjct: 376 HSNDYQLALQRFAKREGANVMSYDLII--CNSVTSFIGWKCVMSLWCLNPAVVFRDIADL 433
Query: 451 FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDC-ICPMVLTRGSDQLPVSTKFD 509
SV++TSGTLSP+ + L + D + VL+ G ++ +
Sbjct: 434 TLSVILTSGTLSPMGSFASELGVQFEACMEAPHVINADSQVFATVLSSGPTGRRLNASYR 493
Query: 510 MRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFI 569
++ G L E+ +VP G + FF SY+ ++++ W+ +G + K V +
Sbjct: 494 TANEYSFQDELGATLEEICRVVPGGALVFFPSYNLLEKLQRRWSQTGQWARLEAQKHVCV 553
Query: 570 E-------------------------------TQDVVETTLALDNYRKACDCGRGAVFFS 598
E + +V+ + D+ +++ GA F +
Sbjct: 554 EPRGSTEELEPVLKGYYNAILGKAPPKKGRGGAKQIVKNRVTKDSSQESAK--GGAAFLA 611
Query: 599 VARGKVAEGIDFDRHYGRLVIMF 621
V RGKV+EGIDF R+V+ F
Sbjct: 612 VCRGKVSEGIDFSDDKARVVVSF 634
>gi|38707228|gb|AAR27232.1| DEAH helicase isoform 6 [Mus spretus]
Length = 1128
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 142/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT + + +
Sbjct: 65 DAISSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQPTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 106/199 (53%), Gaps = 7/199 (3%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYP--RLLNFHPVVSRSFKMSLTRD 488
VL C S +++ V +++++TSGTL+P+ + + + F PV + + + ++
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEKQIPF-PVCLENPHI-IDKN 509
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++
Sbjct: 510 QLWVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKS 569
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAE 606
+ W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +E
Sbjct: 570 LEFWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASE 629
Query: 607 GIDFDRHYGRLVIMFGVPF 625
G+DF GR VI+ G+P+
Sbjct: 630 GLDFSDMNGRGVIVTGLPY 648
>gi|320591639|gb|EFX04078.1| dead domain containing protein [Grosmannia clavigera kw1407]
Length = 911
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 147/613 (23%), Positives = 244/613 (39%), Gaps = 129/613 (21%)
Query: 68 VKLIYCTRTVHEMEKTLAELKL-----------LHNYQTRHLGPAA---KILAIGLSSRK 113
VK+ Y +RT ++ + +AEL+ + + + AA I I LSSR+
Sbjct: 252 VKIYYASRTHSQLTQFIAELRRPTFPSSLPDFSQPDKEIDGVAAAAVDEPIRHIPLSSRQ 311
Query: 114 NLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE--------KAA 165
LC+N V + +++ C + + + I C F + E + A
Sbjct: 312 RLCINPAVARLGSVGAINDRCAELQKPKKKTKTDDGKKIPGCPFAPSAENRVAERQFRDA 371
Query: 166 SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF---ANVVVYSYQYLLDPKVAGIIS 222
+ A LP ++DL G + CPY+ +R + A +V Y LL +
Sbjct: 372 ALATLP----DIEDLFRLGTELHVCPYYGSRRAAEAGGGAEIVTLPYPLLLHKAAREALG 427
Query: 223 KEMQKESVVVFDEAHNIDNV-----CIEALSVSVRRQTLEGATRNLSRINQEIERFKATD 277
++ SVV+ DEAHNI + L+V VRR R D
Sbjct: 428 IRLEN-SVVIVDEAHNIMDAVAGVHAAALLAVYVRR----------------FGRRLRGD 470
Query: 278 AGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLV 337
+ + R+++GL+ AW+ A ++ + LV
Sbjct: 471 GRVMVGQLGRVIQGLS---------AWMEGGADQINLFE-------------------LV 502
Query: 338 QYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEF-LH 396
QY++ VE S+ A + A +QK ++ T+ D H
Sbjct: 503 QYIQTSKLAFKVE-----SYGAYVEEEAEKNQK---------------VQKTENDAHNAH 542
Query: 397 ----IQTICDFATLVGTYTRGFSIIIEPFDERMPHI-----PDPVLQLSCHDASLAVKPV 447
+ T+ F L T G I F ER+P + PD L + A +
Sbjct: 543 NPPVLHTLVSF-LLALTNLSGEGRI---FYERLPLVSPGAAPDVKLSYLLLSPTHAFSSI 598
Query: 448 FDRFQSVVITSGTLSPIDLYP-RLLNFHP-----VVSRSFKMSLTRDCICPMVLTRGSDQ 501
++V++ GT++P Y L H +S + + C+ + S
Sbjct: 599 AASARAVILAGGTMAPFSDYRCHLFPSHAPERITTLSCGHVIPPSNLCVWTLAFISPSSP 658
Query: 502 LPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG----- 556
P+ F RS R+ G ++ + ++VPDG+V FF SY Y+DE++A W +G
Sbjct: 659 -PLDFSFQKRSLAQTIRDLGAAMLNLCAVVPDGVVVFFPSYGYLDEVVAAWKTAGPGATS 717
Query: 557 ILKEIMQHKLVFIETQDVVETTLALDNYRKAC----DCGRGAVFFSVARGKVAEGIDFDR 612
+ + K VF+ET+ + L +Y +A +GA+ FSV GK++EGI+F
Sbjct: 718 LWDRLCARKTVFLETRGAASSDDVLADYSRAILGEEPKSQGALLFSVVGGKMSEGINFAD 777
Query: 613 HYGRLVIMFGVPF 625
GR V++ G+PF
Sbjct: 778 RLGRCVVIVGLPF 790
>gi|38707222|gb|AAR27229.1| DEAH helicase isoform 3 [Mus spretus]
Length = 1164
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 142/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT + + +
Sbjct: 65 DAISSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQPTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + V + ++ +
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEKQIPFPVCLENPHIIDKNQL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 512 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 572 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 632 DFSDMNGRGVIVTGLPY 648
>gi|242399192|ref|YP_002994616.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus sibiricus
MM 739]
gi|242265585|gb|ACS90267.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus sibiricus
MM 739]
Length = 643
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 143/630 (22%), Positives = 258/630 (40%), Gaps = 107/630 (16%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
YFPY ++ P Q ++ + + + ++E PTG GKTI++L+ Y E K+
Sbjct: 4 YFPYQSLRPNQEDFIKLVDTVVRNGENLVIEAPTGFGKTISVLAGALPYA---KEMGYKI 60
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
IY RT +M++ + ELK + N ++ + SRK LC++ V +
Sbjct: 61 IYLARTHKQMDRVIEELKAISN--------KTQVSGVEFRSRKELCLHQYV----QNFAP 108
Query: 131 DAACRKRTASWVRALAAENPNIETCEFFENYEKA-------ASAAVLPPGVYTLQDLRAF 183
DA ++ L CEFFEN +K A V P + +
Sbjct: 109 DAYNAMIVCKNLKKLG-------KCEFFENLKKKKEEFDELAQYFVQKPAEPMM--ILTH 159
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEAHNID 240
K +CPY L R + ++V+V SY Y++DP + + +V+FDEAHN+
Sbjct: 160 SKMLDFCPYELTRKIAFNSDVIVASYLYMIDPAIRENFMAYFDFDYSDLIVIFDEAHNLP 219
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGL---ALRGN 297
N I ALS + + +++R +E + +K + + + + +E L LR +
Sbjct: 220 NQAINALSDRL-------SVYSINRAIKEADEYKEHEIANFLSIFLKGLENLYQEKLR-D 271
Query: 298 LPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
L I + P +P I + + +L ++V+ E + P S+
Sbjct: 272 LKIDEV----PIIPESIFYHVFDVLKINEKQLIRILDQMVKAGDAIREDKIERSLPPRSY 327
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
V + L+L + +++L + + +GFS
Sbjct: 328 VGRVGEF-----------------LLLWFALIGKEDYLFLM----------SREKGFS-- 358
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
L+L D S A+ V QS + SGT++P++ + ++ +
Sbjct: 359 ---------------LELVALDPSKALSFV-KNVQSAIFMSGTMTPLEAFADIMGIEGKL 402
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+ ++ + I + VST+ D RS + + K +VE V ++P +
Sbjct: 403 KKFPRIVKKENAIVLVAKD-------VSTRGDERS-LELYKKMAKYIVEAVKLIPKNVGV 454
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV--ETTLALDNYRKACDCGRGAV 595
F SY ++ +++ D I + + K VFIE + E L + +++ GAV
Sbjct: 455 FTASYEVLEGLLSANVDIQI--QEVSGKKVFIEKRGASSKENDLLVMAFKEEAKRD-GAV 511
Query: 596 FFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
V G+ +EG D+ VI+ G+P+
Sbjct: 512 LLGVMGGRNSEGQDYSGDEMNGVILVGIPY 541
>gi|38707226|gb|AAR27231.1| DEAH helicase isoform 5 [Mus spretus]
Length = 1170
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 142/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT + + +
Sbjct: 65 DAISSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQPTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + V + ++ +
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEKQIPFPVCLENPHIIDKNQL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 512 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 572 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 632 DFSDMNGRGVIVTGLPY 648
>gi|38707224|gb|AAR27230.1| DEAH helicase isoform 4 [Mus spretus]
Length = 1165
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 142/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT + + +
Sbjct: 65 DAISSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQPTQVIR 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++
Sbjct: 170 -------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEI 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + T G L+ E+
Sbjct: 279 INQVLEEQARVTQQGELQQEF 299
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + V + ++ +
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEKQIPFPVCLENPHIIDKNQL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 512 WVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 572 FWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 632 DFSDMNGRGVIVTGLPY 648
>gi|149033944|gb|EDL88727.1| similar to helicase-like protein NHL isoform 2 [Rattus norvegicus]
Length = 1264
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 144/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLTQVIG 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEV 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + G L+ E+
Sbjct: 279 INQVLEEQARVAQHGELQQEF 299
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 102/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ + + +++++TSGTL+P+ + + V + ++ +
Sbjct: 439 VLSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQL 498
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
V+ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 499 WVGVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLE 558
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ K++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 559 FWQAQGMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPGSNGATFLAVCRGKASEGL 618
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 619 DFSDMNGRGVIVTGLPY 635
>gi|300797873|ref|NP_001178786.1| regulator of telomere elongation helicase 1 [Rattus norvegicus]
gi|229891752|sp|Q5RJZ1.2|RTEL1_RAT RecName: Full=Regulator of telomere elongation helicase 1
Length = 1274
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L S LS + K+IY +RT ++ + +
Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLTQVIG 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 EL--------RNTSYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEV 278
Query: 266 INQEI-ERFKATDAGRLRAEY 285
INQ + E+ + G L+ E+
Sbjct: 279 INQVLEEQARVAQHGELQQEF 299
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 102/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ + + +++++TSGTL+P+ + + V + ++ +
Sbjct: 452 VLSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQL 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
V+ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 512 WVGVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGI 608
W G+ K++ K +F+E ++ + +D Y + A GA F +V RGK +EG+
Sbjct: 572 FWQAQGMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPGSNGATFLAVCRGKASEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 632 DFSDMNGRGVIVTGLPY 648
>gi|391338586|ref|XP_003743639.1| PREDICTED: LOW QUALITY PROTEIN: regulator of telomere elongation
helicase 1 homolog [Metaseiulus occidentalis]
Length = 1132
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 159/695 (22%), Positives = 264/695 (37%), Gaps = 159/695 (22%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV------- 60
V + FP++ Y Q YM + L + LLE PTGTGKT++LL +++
Sbjct: 27 VNISFPFEP-YELQKDYMSAVLECLQKGWNGLLESPTGTGKTLSLLCSSLAWLEDRKAAM 85
Query: 61 ------------------------LSKPENPVK----------LIYCTRTVHEMEKTLAE 86
LS E P + ++Y +RT ++ + E
Sbjct: 86 QLNCEFRSAQSXSAYRETVRSLPKLSAAETPTQTSSSFDFYPQVLYSSRTHSQLSQASRE 145
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
LK + R++ ++ L SR LC+N V N C+
Sbjct: 146 LK---RTKYRYMN------SVVLGSRDQLCINPEVNGLPNSAQKIRKCQILV-------- 188
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
N CE+ NYE S +D F H+V ++V
Sbjct: 189 ----NSRACEYHRNYETKVSH----------ED-------------FTTNHVVDIEDLVT 221
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
++ P A +K ++K+S VVF + + + S RR G RN+
Sbjct: 222 LGKKHCCCPYYA---TKILRKKSDVVFVPYNYV-------VDPSTRRAQGIGLERNIVIF 271
Query: 267 NQ--EIERF---------KATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDIL 315
++ IE F +TD E + + + LA N AD N A
Sbjct: 272 DEAHNIESFCEDSLSFAMSSTDMAGAMKEIDAVAQNLA---NSEEADNMEFNVAE----- 323
Query: 316 KEAVPGNIRRAEHFLHVLRRLVQYLRGRLE-TENVEKEGPVSFVASITAHAGIDQKTLRF 374
L VL+ ++ L R + +K F+ + + ID +
Sbjct: 324 --------------LSVLKSMLGELETRFDKAAETDKHYDGDFIVEMLQASEIDAQ---- 365
Query: 375 CYERLHSLMLTL-----EITDTDEF----LHIQTICDFATLV--GTYTRGFSIIIEPFDE 423
+ER+ L+ +L I+ + + +Q + D + V G + + F E
Sbjct: 366 -HERITGLLDSLLKYIQSISSQGPWGPKGIGLQKVLDMLSTVYSGGTAQELRESFKLFFE 424
Query: 424 RMPHIPDPV-----------LQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLL 471
P V L C + +K + SV++TSGTLSP+ L
Sbjct: 425 HPKEGPKEVFVVERKKKKWELHFVCLAPGVRMKSIVQAGVHSVILTSGTLSPMGTLATEL 484
Query: 472 NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIV 531
+ S +T D I + + +G D + + + + RS R+ G L EM V
Sbjct: 485 GIPFQIQLSNDHIITPDKIQVLCVPKGPDNVELISTYQNRSSEKYIRSLGLTLNEMSRRV 544
Query: 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKAC-DC 590
P G++ FF S++ M ++ W + GI++ + HK++ E + YR A +
Sbjct: 545 PHGVLVFFPSFACMKALVEKWEEFGIMRRLKAHKMLLQEEPGSSSFNSTIQCYRDAVINN 604
Query: 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+GA+ F+V RGK +EG+DF + R VI+ G+P+
Sbjct: 605 AQGAMLFAVCRGKSSEGVDFSDEFARAVIIVGIPY 639
>gi|380006443|gb|AFD29612.1| RTEL1 [Schmidtea mediterranea]
Length = 1057
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 58/306 (18%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY------VL 61
V++ FP++ Y Q YM ++ +L + +LE PTGTGKT+ LL ++ V
Sbjct: 9 VSIDFPFEP-YACQIIYMEKVIESLKDGKNAILESPTGTGKTLCLLCAALAWQDHVKKVT 67
Query: 62 SKPENPV-----------------------------KLIYCTRTVHEMEKTLAELKLLHN 92
+ E+ + K+IY +RT ++ + + LK
Sbjct: 68 TNSEDEILLHLNSNGNQYWNKLKKSQLNISKINVVPKIIYSSRTHSQLSQCINALKRTQ- 126
Query: 93 YQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNI 152
Y R +G A SR+ LC+N +V+ E+ + C+ R +
Sbjct: 127 YCDRKVGMIA--------SREQLCINPKVMNLESNTAKIYGCKSRVKT------------ 166
Query: 153 ETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYL 212
C F+ +EKA + ++DL GK++ CPYFL+R M A++ Y YL
Sbjct: 167 RKCFFYNQFEKAKEILSSETKIADIEDLLTIGKKKSVCPYFLSREMFDSADITFMPYNYL 226
Query: 213 LDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIER 272
LD K+ + + + K ++V+FDEAHNI+ VC ++ SV + + L + + I
Sbjct: 227 LDSKIRRLYNINL-KGNIVIFDEAHNIEQVCEDSASVQLTSINIASCIEELKVLGEFIYS 285
Query: 273 FKATDA 278
++TDA
Sbjct: 286 IQSTDA 291
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 4/198 (2%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C A +K + +S+++TSGTL PI+ ++ V + D +
Sbjct: 457 VLSFWCMTAGRTMKSLAGCEVRSIILTSGTLYPIETLKLDMDIKFEVELRNSHVINADQM 516
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
V T+G+D P+++ + R + G ++ + I+P G++ F SY M + I
Sbjct: 517 MVSVCTKGADGEPLNSSYLTREKISYTNSLGNSILNLSKIIPRGLLVVFPSYGMMRKCIE 576
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDN-YRKACD--CGRGAVFFSVARGKVAEG 607
W I +MQHK + +E QD + TLA++ Y K D +G++ SVARGK++EG
Sbjct: 577 RWESCDIYNSMMQHKQLIVEPQDKTKFTLAMEQFYSKNSDPLSNKGSILLSVARGKISEG 636
Query: 608 IDFDRHYGRLVIMFGVPF 625
+D H GR VI+ G+P+
Sbjct: 637 LDLSDHQGRGVIVVGLPY 654
>gi|354481991|ref|XP_003503184.1| PREDICTED: LOW QUALITY PROTEIN: regulator of telomere elongation
helicase 1-like [Cricetulus griseus]
Length = 1259
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 144/319 (45%), Gaps = 64/319 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPE-----------NPVKLIYCTRTVHEMEKTLAELK 88
L S LS + K+IY +RT ++ + ++EL
Sbjct: 65 DAVSSLKIAERVQGELFASRSLSSWNAADGDSIACYTDIPKIIYASRTHSQLTQVISEL- 123
Query: 89 LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAE 148
R+ K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 124 -------RNTSYRPKVCVLG--SREQLCIHPEVKKQESNHMQIHLCRKKVAS-------- 166
Query: 149 NPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYS 208
+C F+ N E+ + L + ++DL G + CPY+L+R+M Q A+++
Sbjct: 167 ----RSCHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNMKQQADIIFMP 222
Query: 209 YQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQ 268
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + T L INQ
Sbjct: 223 YNYLLDAKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEAINQ 278
Query: 269 EI-ERFKATDAGRLRAEYN 286
+ E+ + G L+ E++
Sbjct: 279 VLEEQARLAQQGELQLEFS 297
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + + V + R+ +
Sbjct: 449 VLSYWCFSPSHSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDRNQL 508
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
V+ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 509 WVGVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLE 568
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGI 608
W + K + K +F+E ++ + +D Y R A GA F +V RGK +EG+
Sbjct: 569 FWRAQDLAKRVEVLKPLFVEPRNKGSFSEVIDAYYQRVASPGSSGATFLAVCRGKASEGL 628
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 629 DFSDMNGRGVIVTGLPY 645
>gi|344254979|gb|EGW11083.1| Regulator of telomere elongation helicase 1 [Cricetulus griseus]
Length = 1225
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 144/319 (45%), Gaps = 64/319 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPE-----------NPVKLIYCTRTVHEMEKTLAELK 88
L S LS + K+IY +RT ++ + ++EL
Sbjct: 65 DAVSSLKIAERVQGELFASRSLSSWNAADGDSIACYTDIPKIIYASRTHSQLTQVISEL- 123
Query: 89 LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAE 148
R+ K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 124 -------RNTSYRPKVCVLG--SREQLCIHPEVKKQESNHMQIHLCRKKVAS-------- 166
Query: 149 NPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYS 208
+C F+ N E+ + L + ++DL G + CPY+L+R+M Q A+++
Sbjct: 167 ----RSCHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNMKQQADIIFMP 222
Query: 209 YQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQ 268
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + T L INQ
Sbjct: 223 YNYLLDAKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEAINQ 278
Query: 269 EI-ERFKATDAGRLRAEYN 286
+ E+ + G L+ E++
Sbjct: 279 VLEEQARLAQQGELQLEFS 297
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C S +++ V +++++TSGTL+P+ + + V + R+ +
Sbjct: 449 VLSYWCFSPSHSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDRNQL 508
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
V+ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 509 WVGVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLE 568
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGI 608
W + K + K +F+E ++ + +D Y R A GA F +V RGK +EG+
Sbjct: 569 FWRAQDLAKRVEVLKPLFVEPRNKGSFSEVIDAYYQRVASPGSSGATFLAVCRGKASEGL 628
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 629 DFSDMNGRGVIVTGLPY 645
>gi|398396280|ref|XP_003851598.1| hypothetical protein MYCGRDRAFT_86617 [Zymoseptoria tritici IPO323]
gi|339471478|gb|EGP86574.1| hypothetical protein MYCGRDRAFT_86617 [Zymoseptoria tritici IPO323]
Length = 825
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 137/588 (23%), Positives = 239/588 (40%), Gaps = 83/588 (14%)
Query: 66 NPVKLIYCTRTVHEMEKTLAELKL-----------LHNYQTRHLGPAAKILAIGLSSRKN 114
+ +K+ +C+RT ++ + + ELK L N T + P ++ + L SRKN
Sbjct: 190 DEMKIFFCSRTHSQLSQFVGELKRVGLPPGFPPADLKNSGT--VEPTEELKHLTLGSRKN 247
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP--- 171
LC+N +V ++ +++ C + + P + C F N K + VL
Sbjct: 248 LCINEKVNKLTSQTAINEKC-------IELQQSTTPTDKKCGFLPN--KDSEDVVLEFRD 298
Query: 172 ---PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
+ ++DL G + CPY+ +R + A +V Y LL + + K
Sbjct: 299 HALAKIRDIEDLATLGSKLQICPYYASRPGIGHAEMVTLPYPLLLQKAAREALGINL-KG 357
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRL 288
VV+ DEAHN+ + SV + L A +L +++F+ G R+ ++
Sbjct: 358 HVVIIDEAHNLMSAVEGIYSVQISDAQLNRARDSLMVY---LQKFRNRLKGSNRSYVTQV 414
Query: 289 VEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHV-------LRRLVQYLR 341
V + D+ L + E PG++ A L L +L++Y+
Sbjct: 415 VR---------VIDSLLQ---FTRSVQDEKTPGSVVAASALLAGKSVDQINLSKLIRYIN 462
Query: 342 GRLETENVEK-EGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTI 400
E++ K EG + + A C S +E D H+Q
Sbjct: 463 ---ESKLARKVEGYSVYKSQFEAGD---------C-----STPQQVEKADVPTLTHVQ-- 503
Query: 401 CDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGT 460
+F + +R + D+ + ++ D S + V + ++V++ GT
Sbjct: 504 -NFLLALMNPSREGRFLWSKEDKNI------TIRYLLLDPSEHFREVVESARAVILAGGT 556
Query: 461 LSPIDLYPRLL--NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVAR 518
+SP++ Y + L + + S + + +T D V F R+D A
Sbjct: 557 MSPMEEYKQQLFPYLDSITTFSCGHLIPPSSLYVRAITSDIDGR-VDFTFKSRTD-ATAL 614
Query: 519 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFI-ETQDVVET 577
G+ L E+ V G++ FF SYSY++ +A W I + K VF E ET
Sbjct: 615 RLGRALAEIAKKVKGGMIVFFPSYSYLESTLAFWKTQPIFSQFEAIKPVFCDERSGAAET 674
Query: 578 TLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
T + A RGA+ SV GK++EGI+F GR V++ G+P+
Sbjct: 675 TFRTYSEAIAGSSTRGAILLSVIGGKLSEGINFADDLGRCVVVVGLPY 722
>gi|345805276|ref|XP_852649.2| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Canis lupus familiaris]
Length = 1247
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 140/582 (24%), Positives = 240/582 (41%), Gaps = 65/582 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 244 KIYFGTRTHKQIAQITRELR-----RTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 294
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-----GVYTLQDLRAF 183
C + + N ++C F+ K ++ L + +++L +
Sbjct: 295 E---KCME---------LLDGKNGKSCYFYHGVHKISNQHTLQTLQGMCKAWDIEELVSL 342
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR +++ A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 343 GKKLKACPYYTARELIEDAHIIFCPYNYLLDAQIRESMDINL-KEQVVILDEAHNIEDCA 401
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
E+ S SV L A L S +N I + + LRA L+ L +
Sbjct: 402 RESASYSVTEVQLRFARDELDSMVNNNI---RKKNHEPLRAVCYSLINWLEANSEHLVER 458
Query: 303 AWLSNPAL--PSDILKEAVPGNIRRAE------HFLHVLRRLVQYL--RGRLETENVEKE 352
+ S+ + S+++ I A HF VL++ + L G+ ET +E
Sbjct: 459 DYESSCKIWSGSEMVLNLHKMGITTATFPILQGHFSAVLQKEEKVLPIHGKEET----RE 514
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
P+ I+A I K L ++ L D D + IQ + T +
Sbjct: 515 VPI-----ISASTQIMLKGLFMVFDYL--FRQNSRFAD-DYKVAIQQTYSWINQTDTSDK 566
Query: 413 -GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLL 471
GF + VL C + ++A + + ++V+TSGTLSP+ + L
Sbjct: 567 NGFFAPAKNKKHLRQKTAVHVLNFWCLNPAVAFSDINGKVLTIVLTSGTLSPMKSFSSEL 626
Query: 472 NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIV 531
+ + + + G + F G LL+ + V
Sbjct: 627 GVTFTIQLEANHVINNSQVWVGTIGSGPKGRNLCATFQHTETFEFQDEVGALLLSVCQTV 686
Query: 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ--------DVVETTLALDN 583
GI+CF SY ++++ W +G+ + K V +E Q ++++
Sbjct: 687 NQGILCFLPSYKLLEKLKERWLYTGLWHNLELVKTVIVEPQGGEKTDFNELLQVYYDAIK 746
Query: 584 YRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y+ D GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 747 YKGEKD---GALLVAVCRGKVSEGLDFSDDNARAVITIGIPF 785
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ + V + FPY YP Q + M + R L++K HCLLE PTG+GK++ALL
Sbjct: 8 YTIGGVKITFPY-KAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALL 57
>gi|193608349|ref|XP_001949260.1| PREDICTED: probable ATP-dependent RNA helicase DDX11-like
[Acyrthosiphon pisum]
Length = 890
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 134/612 (21%), Positives = 251/612 (41%), Gaps = 83/612 (13%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
VK+ +C+RT ++ + +AELK P + I L+SR+N C+N V +N
Sbjct: 206 VKIYFCSRTHSQLSQFVAELKK---------SPYSTSRIIPLASRQNYCINRTVKKLKNI 256
Query: 128 DSVDAAC----------RKRTASWVRALAAENPNIETCEF-FENYEKAAS-AAVLPPGVY 175
++ C + S V ++ + C+ + + +K S A + +
Sbjct: 257 TLMNERCLEMGKPKPTQKPTKVSSVGSVVKKKKTEPICKCPYNDKDKIQSLAEEVTIELR 316
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
+++L G Q CPY+ +R V++A +V Y LL ++ ++ + DE
Sbjct: 317 DMEELVNRGDQISACPYYASRESVKYAQIVTLPYNTLLHKSTREASGIRLEG-NIFIIDE 375
Query: 236 AHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALR 295
AHN+ + S + Q L T + S++ Q +F+ + N+L+ +
Sbjct: 376 AHNLLDTIGHIHSSQINGQQL---THSYSQLIQYKNKFELRFSASNLLHLNQLIYVIGKL 432
Query: 296 GNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLR----------------RLVQY 339
N+ +S+ ++ ++ V + E F+H ++ Q
Sbjct: 433 INMLGGTPGVSH----AEASRKGVDSKVYTLESFVHQAEIDHLNMFMLVDFFKRSKIGQK 488
Query: 340 LRGRLE----TENVEKEGP-----VSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITD 390
+RG E + +++ P +F+ I K L+ E H + ++ D
Sbjct: 489 IRGYSEKYMPSVSLQPSKPKLSNLQTFLKQIETKKNSKGKELKED-ENKH---IDPQVAD 544
Query: 391 TDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR 450
+ + F + Y II + VL+ + ++ K + D+
Sbjct: 545 IISNNPLTPVMAFIESLTNYCEDGRII----STTQAFVSKGVLKFLLLNPAVHFKEIVDK 600
Query: 451 FQSVVITSGTLSPIDLYP-RLLNFHP-----VVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
+SV+++ GT+ PI + +L NF+ ++ S + D I P+++ G P
Sbjct: 601 ARSVIVSGGTMEPISEFKDQLFNFNGDNSDRIMHFSCGHVVPPDHILPLIVCSG----PT 656
Query: 505 STKFDM----RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+FD R+ + G LL + VP GIVCFF SY Y + + ++
Sbjct: 657 GKQFDFSYQERTSIKMLNEIGSLLENICRTVPAGIVCFFPSYDYEQFVYQYLEKNKVINR 716
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACDCGR-------GAVFFSVARGKVAEGIDFDRH 613
+ + K +F E + + L NY +A GA+ FSV GK++EG++F
Sbjct: 717 LSERKKLFREPKSTNQVDEVLKNYSQAITTTSVLNSKVTGALLFSVIGGKLSEGLNFSDD 776
Query: 614 YGRLVIMFGVPF 625
GR VI+ G+P+
Sbjct: 777 LGRCVIVIGLPY 788
>gi|395324700|gb|EJF57135.1| DNA repair helicase [Dichomitus squalens LYAD-421 SS1]
Length = 879
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 135/545 (24%), Positives = 230/545 (42%), Gaps = 66/545 (12%)
Query: 106 AIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAA 165
A+ L SRK LC+N R+ E +D ACR+ + P++E +
Sbjct: 262 AVSLGSRKQLCINERL--KERAGDLDEACRQMLGEKGKKRCPHLPSVEEEARMLDLRDQI 319
Query: 166 SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM 225
A ++DL G+ CPYF +R + A +V+ Y LL + ++
Sbjct: 320 LATP-----KDIEDLYQIGQAADTCPYFGSRRAIPKAQLVLLPYNLLLQKTAREALGIDL 374
Query: 226 QKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS----RINQEIERFKATDAGRL 281
+ VV+ DEAHN+ + + + + +TL A LS R + A RL
Sbjct: 375 T-DQVVIIDEAHNLTSTLLSLSATRLPLRTLSAARHQLSIYLSRFRNRLSTVHALHLKRL 433
Query: 282 RAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFL---HVLRRLVQ 338
++EGL+ A+ W A P++ K V G + ++ RL +
Sbjct: 434 ----TNVLEGLS-----KYAEDWREAQAKPAEDGK--VKGRAGPEVEVITSGELMTRLGR 482
Query: 339 YLRG--RLETENVEKEGPVS------FVASITAHAGIDQKTLRFCYERLHSLMLTLEITD 390
G LE E +E ++ V + AG Q T++ L + +
Sbjct: 483 KAEGVNLLEIEKYLRESKIARKISGYSVKELEKAAG--QDTVK--------LAKLARLAN 532
Query: 391 TDEFLHIQTICDF-ATLVGTYTRG---FSIIIEPFDERMPHIPDPVLQLSCHDASLAVKP 446
T LH + F L + G FS++ + + H+ +P +
Sbjct: 533 TTPPLH--AVESFIVALTASSDDGRVTFSLVDGSVEIKYQHL-NPATHF---------QE 580
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLLNFHP---VVSRSFKMSLTRDCICPMVLTRGSDQL 502
V D +SVV+ GT+SP+ D+ +L + P + + S + + +VL +G
Sbjct: 581 VVDAARSVVLAGGTMSPMSDVVNQLFSSLPSERLTTFSCGHIIPTSNLQTLVLKKGPRGG 640
Query: 503 PVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM 562
++ KF R D + G++L+ ++VP G+V F SY +++ I W SG+L+++
Sbjct: 641 ELTFKFQQRGDDSLIAELGQILLNFTNVVPGGMVVFVPSYGFLNVITERWKASGMLEKLS 700
Query: 563 QHKLVFIETQDVVETTLALDNYRKAC--DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIM 620
K VF E Q+ + L +Y RGA+ F+V K++EG++F R VI+
Sbjct: 701 AKKKVFSEPQESKQVEAVLRDYAAEIKDSSRRGALLFAVVGAKLSEGLNFTDDLARAVII 760
Query: 621 FGVPF 625
G+PF
Sbjct: 761 VGLPF 765
>gi|315230899|ref|YP_004071335.1| DNA repair Rad3-like helicase [Thermococcus barophilus MP]
gi|315183927|gb|ADT84112.1| DNA repair Rad3-like helicase [Thermococcus barophilus MP]
Length = 642
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 148/631 (23%), Positives = 268/631 (42%), Gaps = 108/631 (17%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
YFPY ++ P Q ++ + A+ + ++E PTG GKTI++L+ + Y LS K+
Sbjct: 4 YFPYKSLRPNQEEFISLVDEAVRKGENLIIEAPTGFGKTISVLAGVLPYALSMG---FKV 60
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN--RD 128
+Y RT +M++ + ELK + + P + + SRK LC++S + +N D
Sbjct: 61 VYLARTHKQMDRVIEELK-----EINKINPVS---GVEFRSRKELCLHSYI---QNFVPD 109
Query: 129 SVDA--ACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQ 186
+ +A C K + EN + EF E E ++ P + + +L
Sbjct: 110 AYNAMIVC-KNLKKLHKCDYFENVKKKKDEFSEIVEYFLNSPSQPIEILSYSNLLEL--- 165
Query: 187 QGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEAHNIDNVC 243
CPY + R + + ANV+V SY Y+L+P + + + ++ +V+FDEAHN+ N
Sbjct: 166 ---CPYEVTRKVGEKANVIVASYLYMLNPAIRNAFIESLGVDYEDLIVIFDEAHNLPNQA 222
Query: 244 IEALSVSVRRQTLEGATRNLSRINQ-EIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
I+ LS + ++ A + N+ EI F + ++GL N + D
Sbjct: 223 IDVLSDKITLNSITRAVKEAEEYNEHEIANFLSI-----------FLKGLENLYNERLKD 271
Query: 303 AWLSN-PALPSDILKEAVPGNIRRAEHFLHVL----RRLVQYLRGRLETENVEKEGPVSF 357
+ P LP I H +L R LV+ LR +E + +E +
Sbjct: 272 REVEEIPILPESIFS-----------HVFDILNISERLLVRILREIVEVGDAIREDKIEK 320
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLT-LEITDTDEFLHIQTICDFATLVGTYTRGFSI 416
++ G R+ +L L + +++L I + RGFS
Sbjct: 321 NKPPRSYVG-----------RVGEFLLNWLSVIGREDYLFIMS----------KDRGFS- 358
Query: 417 IIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPV 476
L+L D S A+ + D QS + SGTL+P++ + ++
Sbjct: 359 ----------------LELVALDPSKALDFIND-IQSAIFMSGTLTPLEAFKDIMGIENA 401
Query: 477 VSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIV 536
+ F + ++ +V VST+ + R + + R + +VE V ++P +
Sbjct: 402 KLKKFPRMVKKENALVLVAK------DVSTRGEER-NLELYRKMAEYIVEAVKLIPKNVG 454
Query: 537 CFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV--ETTLALDNYRKACDCGRGA 594
F SY + +++ I +E+ K VFIE ++ E + + +++ G
Sbjct: 455 VFTASYEVLQGLLSANVHLRIEEEV--GKKVFIEKKNASSKENDILVRAFKEEAK-REGG 511
Query: 595 VFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
V V G+ +EG D+ V++ G+P+
Sbjct: 512 VLLGVMGGRNSEGQDYSGDEMNGVVLVGIPY 542
>gi|428173640|gb|EKX42541.1| hypothetical protein GUITHDRAFT_111516 [Guillardia theta CCMP2712]
Length = 1115
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 127/552 (23%), Positives = 243/552 (44%), Gaps = 110/552 (19%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + +RT ++ + + EL+ +T++ + +I +G SR++ C+N RV+A+E
Sbjct: 152 KIYFASRTHSQIAQLVRELR-----KTKY---SPRICVLG--SREHYCINPRVMASE--- 198
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-GVYTLQDLRAFGK-- 185
K +A EN +C F+ ++ + L P G L D+ +
Sbjct: 199 -------KPKGEECKAKLKEN----SCSFYHGVQRLENHKDLQPHGKLRLHDIEGRDRPP 247
Query: 186 QQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIE 245
+ CPYF AR + + ANV+ Y YL++P + + E++ +V++ DEAHNI++VC E
Sbjct: 248 KVHGCPYFAARSLAKRANVIFCPYNYLVEPAIRDAMGVELEGNTVII-DEAHNIEDVCRE 306
Query: 246 ALSVSVRRQTLEGATRNLSRINQEIERFK-ATDAGRLRAEYNRLVEGLALRGNLPIADAW 304
A S+ ++ + +L N++ E + A DA N + DA
Sbjct: 307 AASLELKHE-------DLVETNRQWEEMQFAEDA-----------------HNYMLLDAV 342
Query: 305 LSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS-ITA 363
+ N A +KE I++ H+ +Q F+A+ +
Sbjct: 343 VRNLA---SYMKEQSQNLIQQN----HLYSYKIQ----------------SGFIATDVFR 379
Query: 364 HAGIDQKTLRFCYERLHSLMLTLEITDT---DEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+AGI+++TL+ L + L+ + +E + + +++ + P
Sbjct: 380 NAGINEETLKPLNSFLQKAIKKLDEVENQREEESSPLPPAKSLKLVQDIFSKAQLLFQNP 439
Query: 421 FD------------ERMPHIPDPV-----LQLSCHDASLAVKPVFDRFQSVVITSGTLSP 463
FD ER P + L C + ++A K V + ++V++TSGTLSP
Sbjct: 440 FDYRLAIEQRTTREERGGRRPGQAKLELSMSLWCLNPAVAFKAVSSQTRAVILTSGTLSP 499
Query: 464 IDLYPRLLN--FH------PVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPG 515
I + L FH V+ S ++ + C P G+ L ++ + +
Sbjct: 500 ITSFATELGTTFHMTYQAPHVIDTSKQVFVGSVCSVP-----GNPLLKLNGSYKHQDSVI 554
Query: 516 VARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV 575
N G ++E+ I+P G++CFF SY ++++ + W +G ++I + K + +E +
Sbjct: 555 YQDNLGAAVLELCKIIPFGVLCFFPSYGLLEKVKSRWMATGQYEKIDEVKDIIVEPRTGE 614
Query: 576 ETTLALDNYRKA 587
+ A+++Y A
Sbjct: 615 DFDRAMESYYDA 626
>gi|91080379|ref|XP_975049.1| PREDICTED: similar to fanconi anemia group J protein [Tribolium
castaneum]
Length = 676
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C + + D+ V++TSGTL+P+ L + V + D +
Sbjct: 225 VLSYWCFSPGFGMNMLLDQGVHCVILTSGTLAPLKPLISELELNVGVRIENPHIVKGDQV 284
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
C +LT+G D P++ + R +P + G++++ ++ I+P G++ FF SY M +
Sbjct: 285 CVKILTKGPDGEPLNCNYQNRDNPNYLMSLGQVVLNLIRIIPHGVLIFFPSYPIMQKCQQ 344
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDN-YRKACDCG-RGAVFFSVARGKVAEGI 608
W +SGI I + K +F+E +D T A+ Y K D +GA+F V RGKV+EG+
Sbjct: 345 YWQESGIWDGINKIKAIFVEPKDKNSFTFAMSEYYSKVKDPNYKGAIFMGVCRGKVSEGL 404
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR V + G+P+
Sbjct: 405 DFADSNGRAVFIIGLPY 421
>gi|367032502|ref|XP_003665534.1| hypothetical protein MYCTH_2309404 [Myceliophthora thermophila ATCC
42464]
gi|347012805|gb|AEO60289.1| hypothetical protein MYCTH_2309404 [Myceliophthora thermophila ATCC
42464]
Length = 624
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 136/525 (25%), Positives = 215/525 (40%), Gaps = 92/525 (17%)
Query: 150 PNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
PN E + + AA A V ++DL GK+ CPY+ +R + A VV Y
Sbjct: 2 PNSENLKQTHEFRDAALATV-----PDIEDLYRVGKELQVCPYYASRTAIPGAEVVTLPY 56
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQE 269
LL + ++ +VV+ DEAHNI + + + L A + L
Sbjct: 57 PLLLQKSARDALGITLEG-NVVIIDEAHNIMDAVANVYAAEICLSELRRARQMLGIY--- 112
Query: 270 IERFKATDAGRLR---AEYNRLVEGLA--LRGNLPI-ADAWLSNPALPSDILKEAVPGNI 323
++RF G R A+ R+VE L+ L G L D + +P + +LK
Sbjct: 113 VKRFGKKLKGENRVMVAQVGRVVESLSECLNGQLSAKGDQGIVDP---NTVLKA------ 163
Query: 324 RRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF-VASITAHAGIDQKTLRFCYERLHSL 382
R A+ L +L++Y+ +E +++ V S AH DQ+ S
Sbjct: 164 RGADQI--NLYQLIKYI----------QESKLAYKVQSYLAHTENDQEA--------SSA 203
Query: 383 MLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASL 442
+ + LH T+ F T + + I E E I L LS +
Sbjct: 204 GGGERGSSSTPVLH--TLVSFLTALTNLSAEGRIFYEKLAENQGDIKLSYLLLS---PTH 258
Query: 443 AVKPVFDRFQSVVITSGTLSPID-----LYPRL-------LNFHPVVSRSFKMSLTRDCI 490
A + ++V++ GT+SP + L+P L L+ V+ S T I
Sbjct: 259 AFSSIASAARAVILAGGTMSPFEDYKMHLFPALPSHKITTLSCGHVIPASNLFCWTLSSI 318
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
P S F R +P + R G +L+ + S+VPDG+V FF SY Y+D+++A
Sbjct: 319 KPTPSGDPSASDCFEFSFQRRQEPAMIRQLGLVLLNICSVVPDGVVVFFPSYGYLDQVVA 378
Query: 551 TWNDS--------------GILKEIMQHKLVFIET-----QDVVE--TTLALD----NYR 585
W + + K VF ET +D+++ +T L + R
Sbjct: 379 AWQTQEAGTGATTTTTQQPTLWDRLAAKKAVFRETKGATSEDILQQYSTAVLSPRQPDRR 438
Query: 586 KACD-----CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
D GRGA+ SV GK++EGI+F GR V++ G+P+
Sbjct: 439 NPADKPPPPGGRGALLLSVVGGKLSEGINFSDRLGRCVVVVGLPY 483
>gi|313233732|emb|CBY09902.1| unnamed protein product [Oikopleura dioica]
Length = 1145
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 131/265 (49%), Gaps = 45/265 (16%)
Query: 7 DVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY---VLSK 63
++TV FPY+ YP Q SYM + AL + H +LE PTGTGKT+ LL+ + ++ ++
Sbjct: 8 EITVRFPYEP-YPAQDSYMSKCIEALKSGCHAILESPTGTGKTLCLLASVLAFREHYFAE 66
Query: 64 PENPV-------------KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLS 110
+ V K+IY +RT ++ + ++ELK LH G + IG
Sbjct: 67 MKKCVQSGVAGAHMGHVPKIIYSSRTHSQLSQVVSELKKLHTV----CGYNIDMSVIG-- 120
Query: 111 SRKNLCVNSRVLA-AENR---DSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAAS 166
R + C+N +V A+ R ++ A C+ + W L + N
Sbjct: 121 GRGSTCLNPKVKKIADGRLQQNTCSALCKAKKCHWFNTLDSMN----------------- 163
Query: 167 AAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ 226
LP G+ ++DL + ++ C Y+L R + + A +++ Y YLLDP++ E+
Sbjct: 164 EETLPGGILDIEDLVTWSTKRVSCAYYLGRRLAEKAEIILLPYNYLLDPRLRTRHKLEVA 223
Query: 227 KESVVVFDEAHNIDNVCIEALSVSV 251
+ +++FDEAHN++ VC +A S +
Sbjct: 224 NK-ILIFDEAHNVEGVCEDAASFEL 247
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 437 CHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSR-----SFKMSLTRDCI 490
C D S ++ + D +S+++TSGTLSPI+ Y L SR K ++ D +
Sbjct: 421 CFDPSKSITHLLDEGAKSIILTSGTLSPIEEYISNLGLDRHNSRLPVTLVNKHVVSSDQV 480
Query: 491 CPMVLTRGSDQLPVS--TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ +G P+ + R + + G+++ S P G++ F +Y M+
Sbjct: 481 FVATVPKGMGNSPLDMINVYSNRQNSRMFAQMGEIIASAKSASPGGLLVFHPTYRLMNIC 540
Query: 549 IATW------NDSGILKEIMQHKLVFIETQDV---------VETTLALDNYRKACDCGRG 593
W N S + + K +FIE + ET + +N+ +G
Sbjct: 541 RDFWGIMNGANASNPSGNMFKRK-IFIEPSNKNDLEQVNRDYETAIVDNNFE-----AQG 594
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ V RGK++EG+DF GR+VI+ G+P+
Sbjct: 595 GILMGVCRGKISEGVDFADARGRVVIITGIPY 626
>gi|218202591|gb|EEC85018.1| hypothetical protein OsI_32311 [Oryza sativa Indica Group]
Length = 1265
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 148/684 (21%), Positives = 267/684 (39%), Gaps = 156/684 (22%)
Query: 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKP----------------------------- 64
+ H LLE PTGTGK+++LL ++ P
Sbjct: 15 GRSHALLESPTGTGKSLSLLCSALAWQRHYPLRAPPAAAAAAAPDPFLHGGGFVPDDTQK 74
Query: 65 -------------ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSS 111
+N + Y TRT ++ + + E + +Y+ R +AI L+S
Sbjct: 75 QATPGVPEKATRKKNVPTIYYATRTHAQITQVVREYRKT-SYRVR--------MAI-LAS 124
Query: 112 RKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP 171
RK+ CVN V + N +D C+ + + + + C ++N +K + L
Sbjct: 125 RKHYCVNKNVCMSGN---IDELCK----------SLLDDSAQGCPEYKNAQKLSRHPSLQ 171
Query: 172 PG----VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQK 227
G V+ ++DL G++ CPYF A+ M + A +V Y YL+ P V + ++ +
Sbjct: 172 IGGCYEVHDIEDLIRVGRKVKGCPYFAAQTMAEAAQLVFCPYNYLISPIVRRAMDIDI-R 230
Query: 228 ESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDA-GRLRAEYN 286
S++V DEAHNI+++ +A S V ++ L + QE+E +A ++ +
Sbjct: 231 GSIIVLDEAHNIEDIARDAGSFDVDEES-------LLFLRQELEGLVTDEAVAKIYEPLH 283
Query: 287 RLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLET 346
+++GL + W+ GN + F H + G
Sbjct: 284 EVIQGL---------NGWIDEQ------------GNNLQKNEFEHP----ASFWTGEEAM 318
Query: 347 ENVEKEG--PVSF-------VASITAHAGIDQKTLRFCYER---LHSLMLTLEITDTDEF 394
+ ++ G PV+F +I A + + + + L SL +L +
Sbjct: 319 KELKYAGITPVNFPVLQECATKAIKAASDAESEGVHLSGGSAMTLESLFSSLSYFFAENG 378
Query: 395 LHIQ----TICDFATLVGTYTRGFSIIIEPFDERMPHIP-DPVLQLSCHDASLAVKPVFD 449
H + FA G + +II + I V+ L C + ++ + + D
Sbjct: 379 RHSNDYQLALQRFAKCEGANMMSYDLII--CNSVTSFIGWKCVMSLWCLNPAVVFRDIAD 436
Query: 450 RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDC-ICPMVLTRGSDQLPVSTKF 508
SV++TSGTLSP+ + L + D + VL+ G ++ +
Sbjct: 437 LTLSVILTSGTLSPMGSFASELGVQFEACMEAPHVINADSQVFATVLSSGPTGRRLNASY 496
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
++ G L E+ +VP G + FF SY+ ++++ W +G + K V
Sbjct: 497 RTANEYSFQDELGATLEEICRVVPGGALVFFPSYNLLEKLQRRWYQTGQWARLEAQKHVC 556
Query: 569 IE-------------------------------TQDVVETTLALDNYRKACDCGRGAVFF 597
+E + +V+ + D+ +++ GA F
Sbjct: 557 VEPRGSTEELEPVLKGYYNAILGKVPPKKGRGGAKQIVKNRVTKDSSQESAK--GGAAFL 614
Query: 598 SVARGKVAEGIDFDRHYGRLVIMF 621
+V RGKV+EGIDF R+V+ F
Sbjct: 615 AVCRGKVSEGIDFSDDKARVVVSF 638
>gi|74138560|dbj|BAE41179.1| unnamed protein product [Mus musculus]
gi|74216986|dbj|BAE26603.1| unnamed protein product [Mus musculus]
Length = 898
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 140/581 (24%), Positives = 231/581 (39%), Gaps = 63/581 (10%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR
Sbjct: 248 KIYFGTRTHKQIAQITRELR-----KTAYSGVPMTIL----SSRDHSCVHPEVVGNFNRK 298
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP-----PGVYTLQDLRAF 183
C + + + ++C F+ K ++ L + +++L +
Sbjct: 299 E---KCME---------LLDGKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSL 346
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G++ CPY+ AR +++ A++V Y YLLD ++ + ++ K VV+ DEAHNI++
Sbjct: 347 GRKLKACPYYTARELIEDADIVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCA 405
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGR---------LRAEYNRLVEGLA 293
E+ S SV L A L S IN I R K+ + R L LVE
Sbjct: 406 RESASYSVTEVQLRFARDELDSLINGNI-RKKSHEPLRDVCYNLINWLETNSKHLVE--- 461
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
RG W N L N+ R L ++L L+ E EK
Sbjct: 462 -RGYESSCKIWSGNEMLL----------NLYRMGITTATFPVLQRHLSAVLQKE--EKVT 508
Query: 354 PV---SFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY 410
P+ I + Q L+ + L L D + IQ + + +
Sbjct: 509 PIHGKEEAIQIPIISASTQVVLKGLFMVLDYLFRENSRFADDYKVAIQQTYSWTNQIAIF 568
Query: 411 TR-GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
+ G + + I L C + ++A + D+ +++V+TSGTLSP+ +
Sbjct: 569 DKTGVLAVPKNKKHSRQKIGVNALNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSS 628
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
L + ++ + + G + F G LL+ +
Sbjct: 629 ELGVTFSIQLEANHVISNSQVWVGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQ 688
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA--LDNYRKA 587
V GI+CF SY ++++ W +G+ + K V E Q +T L Y A
Sbjct: 689 TVSQGILCFLPSYKLLEKLRERWIFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYYDA 748
Query: 588 CDCG---RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 749 IKFKGEKDGALLIAVCRGKVSEGLDFSDDNARAVITVGIPF 789
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V ++FP YP Q + M + R L++ HCLLE PTG+GK++ALL ++ S
Sbjct: 8 YTIGGVKIHFPC-RAYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQS 66
Query: 63 KPENPV 68
E PV
Sbjct: 67 LSEKPV 72
>gi|310791719|gb|EFQ27246.1| DNA repair helicase [Glomerella graminicola M1.001]
Length = 897
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 142/611 (23%), Positives = 244/611 (39%), Gaps = 99/611 (16%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLL--------HNYQTRHLGP-AAK--ILAIGLSSRKNLC 116
+K+ Y +RT ++ + + EL+ Q R G AAK + + LSSR+ LC
Sbjct: 206 IKIYYTSRTHSQLTQFIHELRRPTFPSSIPPSVVQGRSKGEDAAKEPVKHLPLSSRQKLC 265
Query: 117 VNSRVLAAENRDSVDAAC----RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP 172
+N V +++ C + ++ E+ +T +F + + A LP
Sbjct: 266 INPSVARLGTLSAINDRCSELQKPKSKDKCPYTLKEDNVAQTHQF-----RDTAHATLP- 319
Query: 173 GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
++DL GK+ CPY+ +R V A ++ Y LL + +++ +VV+
Sbjct: 320 ---DIEDLYHLGKKLSICPYYASRAAVAGAEIITLPYPLLLQKNARDALGIKLEG-NVVI 375
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---AEYNRLV 289
DEAHNI + + ++ L A + L + RF G R + R++
Sbjct: 376 VDEAHNIMDAVANVYASEIKLSELRQARQMLGVY---VRRFGKKLKGENRVMVGQVGRVI 432
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHV-LRRLVQYLRGRLETEN 348
EGL+ W+ + + R + + L RLVQY++ E++
Sbjct: 433 EGLS---------EWMDGQSKLKSTQGIVDSKVLLRCKGVDQINLFRLVQYIQ---ESKL 480
Query: 349 VEK-EGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLV 407
K E V+ V AG + R LH T+ F +
Sbjct: 481 AYKIESYVAHVEEEAVGAGHGKPPSRSSAPVLH------------------TLSSFLISL 522
Query: 408 GTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY 467
+ I E P I L LS + A + ++V++ GT+SP + Y
Sbjct: 523 TNLSSEGRIFYEKLATDPPDIQLSYLLLS---PTHAFSSIATSARAVILAGGTMSPFNDY 579
Query: 468 -PRLLNFHP-----VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM----RSDPGVA 517
L + P +S + + C+ + +++ F+ R +
Sbjct: 580 KSHLFPYLPESKLTTLSCGHVIPPSNLCVWTLAGPEPGPNRDINSTFEFSFQRRGEASTM 639
Query: 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG------------ILKEIMQHK 565
N G ++ M ++VPDG+V FF SY Y++E++ W +G I + Q K
Sbjct: 640 SNLGMAILNMCNVVPDGVVVFFPSYGYLEEVVTAWKGAGPRNSQGQNGASSIWDRLQQRK 699
Query: 566 LVFIETQ-----DVVET------TLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHY 614
VF ET+ +V+E + + A RGA+ SV GK++EGI+F
Sbjct: 700 AVFSETRGGSSDEVLEAYSRAILGDGSEPHSGAAAKPRGALLLSVVGGKMSEGINFSDRL 759
Query: 615 GRLVIMFGVPF 625
GR VI+ G+P+
Sbjct: 760 GRCVIIVGLPY 770
>gi|410980592|ref|XP_003996661.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Felis catus]
Length = 1230
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 139/582 (23%), Positives = 239/582 (41%), Gaps = 65/582 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 245 KIYFGTRTHKQIAQITRELR-----RTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 295
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-----GVYTLQDLRAF 183
C + + N ++C F+ K + L + +++L +
Sbjct: 296 E---KCME---------LLDGKNGKSCYFYHGVHKISDQHTLQTLEGMCKAWDIEELVSL 343
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR +++ A++V Y YLLD ++ + + KE +V+ DEAHNI++
Sbjct: 344 GKKLKACPYYTARELIEDAHIVFCPYNYLLDAQIRESMDINL-KEQIVILDEAHNIEDCA 402
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
E+ S SV L A L + +N I + D LRA L+ L +
Sbjct: 403 RESASYSVTEVQLWFARDELDTMVNNNIRK---KDHEPLRAVCYSLINWLEANSEHLVER 459
Query: 303 AWLSNPALPS--DILKEAVPGNIRRAE------HFLHVLRRLVQYL--RGRLETENVEKE 352
+ S+ + S ++L I A HF VL++ + L GR ET +E
Sbjct: 460 DYESSCKIWSGREMLLNLHKMGITTATFPILQGHFSSVLQKEEKVLPIHGREET----RE 515
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
PV I+A I K L ++ L + D D + IQ + + +
Sbjct: 516 VPV-----ISASTQIILKGLFMVFDYL--FRQNSKFAD-DYKVAIQQTYSWINQTDSSDK 567
Query: 413 GFSIIIEPFDERMPH-IPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLL 471
+R+ VL C + ++A + + ++V+TSGTLSP+ + L
Sbjct: 568 NEFFAQAKSRKRVRQKTAVRVLNFWCLNPAVAFSDINGKVWTIVVTSGTLSPMKSFSSEL 627
Query: 472 NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIV 531
+ + + + G + F G L++ + V
Sbjct: 628 GVTFSIQLEANHVINNSQVWVGTIGSGPKGRNLCATFQHTETFEFQDEVGALVLSVCQTV 687
Query: 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET--------QDVVETTLALDN 583
GI+CF SY ++++ W +G+ + K V +E ++++
Sbjct: 688 SQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPPAGEKIDFDELLQMYYDAIK 747
Query: 584 YRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y+ D GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 748 YKGEKD---GALLVAVCRGKVSEGLDFSDDNARAVITIGIPF 786
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V + FPY YP Q + M + R L++K HCLLE PTG+GK++ALL ++ S
Sbjct: 8 YTIGGVKITFPY-KAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSVALLCSALAWQQS 66
Query: 63 KPENPV 68
PV
Sbjct: 67 FNGKPV 72
>gi|402216420|gb|EJT96518.1| hypothetical protein DACRYDRAFT_25669, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 532
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 120/503 (23%), Positives = 219/503 (43%), Gaps = 79/503 (15%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ Y +RT ++ + ++EL+ Y+ K + L SR+NLC+N +
Sbjct: 85 TKIYYTSRTHSQLSQLVSELRKTPLYE--------KTRFVALGSRRNLCINHELRNKAGG 136
Query: 128 DSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT----LQDLRAF 183
D +D ACR N + C F ++++ + V ++DL
Sbjct: 137 D-LDEACRD---------LVNNKQGKGCPFLPSHDEMSKMLDFRDHVLAAPKDIEDLVTL 186
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G++ CPY+ +R ++ + VV Y LL + + + VVV DEAHN+ +
Sbjct: 187 GEELKICPYYGSRQAIKQSEVVTLPYNLLLQKSAREALDINLH-DQVVVIDEAHNLIDTV 245
Query: 244 IEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI--- 300
+ SV++ TLE L ++ + +F+ A + RLV L+ N +
Sbjct: 246 LSIHSVTLSTTTLETC---LGQLAIYVTKFRKRLASKHLIHLKRLVAFLSALENFCLDWQ 302
Query: 301 -ADAWLSNPALP----SDILKEAVPG-NIRRAEHFL---HVLRRLVQYLRGRLETENVEK 351
ADA + L ++ L + V G N+ E +L + R++ Y +L + V K
Sbjct: 303 SADATKNEEMLSIAGVAESLGQKVDGINLLEIEQYLKESKIARKISGY-NDKLAEDQV-K 360
Query: 352 EGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHI-QTICDFATLVGTY 410
G F S ++T + + +L L +D D +H+ +++ D +V
Sbjct: 361 NGDTKFTKS--------RRTTNPPLHAVQAFLLVLMNSDEDGRVHLSKSVIDGKVVV--- 409
Query: 411 TRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI-----D 465
T + ++ P P Q V D ++VV+ GT+ PI
Sbjct: 410 TLCYQLL----------NPSPSFQ-----------EVVDEARAVVLAGGTMEPISDFRTQ 448
Query: 466 LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLV 525
L+PRLL + + S + ++ + + ++RG +S K+ R D G+A G+ L+
Sbjct: 449 LFPRLLE-NRFATFSCGHVVAKENLTALAVSRGPKGGDLSFKYSSRGDKGMASELGQALL 507
Query: 526 EMVSIVPDGIVCFFVSYSYMDEI 548
+S+VPDG+V F SY++++++
Sbjct: 508 NFLSLVPDGMVVFMPSYAFLNQL 530
>gi|403335726|gb|EJY67043.1| Regulator of telomere elongation helicase 1 [Oxytricha trifallax]
Length = 1454
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 30/230 (13%)
Query: 29 KRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS-KPENPV------KLIYCTRTVHEME 81
KR L+A LLE PTGTGKT+ LL+ +++ + N V K+IYC+RT ++
Sbjct: 125 KRGLNA----LLESPTGTGKTLCLLTAGLAWLKKIRESNEVDEKDLPKIIYCSRTHSQIS 180
Query: 82 KTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
+ + ELK H K+ IG SR LCVN V + S+++ C+K
Sbjct: 181 QVMNELK--------HTAYKPKVCLIG--SRDQLCVNPMVNTHKGM-SLNSLCKK----- 224
Query: 142 VRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
VR ++PN C FF+N + + G+ ++DL G + CPY+L + +++
Sbjct: 225 VREQRKDSPNC--CSFFKNTGDSVTPNGFEWGIQDVEDLHKLGTKNIVCPYYLQKSRIKY 282
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSV 251
A++++ Y YL+DPK+ + + S+++ DEAHN++ V + S +
Sbjct: 283 ADLILMPYNYLIDPKIRENFKVDYEN-SIIIMDEAHNVERVAEDVASFEI 331
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 1/177 (0%)
Query: 453 SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
S+++TSGTL P+ + + L + K ++++ +LT G + R
Sbjct: 557 SLILTSGTLYPMSSFQKELMMDFPIKIENKHVISKEQASISILTNGVKGHEFNFAHKFRE 616
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ 572
+ + G+ L+ + + P GI+ FF SY + ++ W SG++K + + K V E +
Sbjct: 617 NEDQLDDLGETLLRITEVTPGGILIFFPSYQMLHKLYELWEHSGLIKRLERIKTVLQEPR 676
Query: 573 DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTL 629
D + ++ ++ +GA+ F+V RGK++EG+DF R VI+ G+P+ TL
Sbjct: 677 DSSHYKYVITSFYQSV-YTKGAIIFAVCRGKISEGLDFSDDAARCVIIIGIPYPMTL 732
>gi|452840275|gb|EME42213.1| hypothetical protein DOTSEDRAFT_81172 [Dothistroma septosporum
NZE10]
Length = 836
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 149/630 (23%), Positives = 256/630 (40%), Gaps = 105/630 (16%)
Query: 40 LEMPTGTGKTIALLSLITSYVLSKPE---------NPVKLIYCTRTVHEMEKTLAELKLL 90
+E P + +T ++ + +L +PE + +K+ +C+RT ++ + + EL+ +
Sbjct: 157 IEQPQYSAETTRMMQKMG--MLPRPETRQNLDDDIDELKVFFCSRTHSQLSQFVGELRRV 214
Query: 91 H----------NYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTAS 140
+ + ++ + SRKNLC+NS+V N+ S A +R
Sbjct: 215 RMPPALPSEKTDGRDDSEQSTEQLKHLTFGSRKNLCINSKV----NQLSSQVAINERCIE 270
Query: 141 WVRALAAENPNIETCEFFENYEKAASAAVLP------PGVYTLQDLRAFGKQQGWCPYFL 194
+A E C + K A VL + ++DL G ++ CPY+
Sbjct: 271 LQQAKTVET----KCPYMPT--KDNEAQVLEFRDHALAKIRDIEDLAQLGAKREICPYYA 324
Query: 195 ARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQ 254
+R V A +V Y LL + + K VV+ DEAHN+ N S +
Sbjct: 325 SRPAVGPAEIVTLPYPLLLQKSAREALGISV-KGHVVIIDEAHNLMNAVESTYSAQISDL 383
Query: 255 TLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDI 314
L+ A L ++RF+ G R+ ++V + DA L + +
Sbjct: 384 QLKRARDALIAY---LQRFRHRLKGSNRSYVTQVVR---------VVDALLQ---FATRM 428
Query: 315 LKEAVPGNIRRAEHFLHV-------LRRLVQYLRGRLETENVEKEGPVSFVASITAHAGI 367
+ V G L L +LV+Y+ V EG V FVA+I A
Sbjct: 429 RQGNVNGGTISPSALLAGKGVDQINLAKLVRYINDSRLARKV--EGYVKFVATIEAEQTR 486
Query: 368 DQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPH 427
Q +R E+ D H+Q TL+ G +
Sbjct: 487 SQTK---SNDR-------GEVVDVPTLTHVQNF--LLTLMNPSREGRFL--------WSK 526
Query: 428 IPDPV-LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLL--NFHPVVSRSFKMS 484
+ D V LQ D S + + + +SV++ GT+SP+D Y + L H + +
Sbjct: 527 MEDGVALQYLLLDPSEHFREIVEDARSVILAGGTMSPMDDYRQQLFPYLHSI------QT 580
Query: 485 LTRDCICP----MVLTRGSDQLP-VSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFF 539
+ D + P V SD+ + F R+D R G ++++ V G+V FF
Sbjct: 581 FSCDHLIPPSSLFVRAISSDEYGRIDFSFKARNDTSAVR-LGNSILQISRKVKGGMVVFF 639
Query: 540 VSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDC----GRGAV 595
SY Y++++++ W I + K +F++ + + A D +R + RGAV
Sbjct: 640 PSYGYLEKVLSIWASQKIKSRLEGLKALFLDGRAMS----AEDTFRAYSETIANDPRGAV 695
Query: 596 FFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
SV GK++EGI+F + GR V++ G+P+
Sbjct: 696 LLSVIGGKLSEGINFSDNLGRCVVVVGLPY 725
>gi|389594205|ref|XP_003722349.1| putative helicase [Leishmania major strain Friedlin]
gi|321438847|emb|CBZ12607.1| putative helicase [Leishmania major strain Friedlin]
Length = 953
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 128/258 (49%), Gaps = 42/258 (16%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
+ +TV FP+D YP Q +M + + L + LLE PTGTGKT+ LL ++ +
Sbjct: 7 VSGITVSFPFDP-YPAQVEFMRSVVKCLQNGFNGLLESPTGTGKTLCLLCSTLGWLSATS 65
Query: 65 ENPV-----------------KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAI 107
+ V K++YC+RT ++ + + ELK +Y R +A+
Sbjct: 66 QGAVLRHASDQDQKGRGKHNHKVVYCSRTHAQLTQVVRELKRT-SYAQRF------TMAV 118
Query: 108 GLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAAS- 166
L SR+++C+N V + + A C AL E C FF + AA+
Sbjct: 119 -LGSREHMCLNKEVTRLPSSQAQHAMCS--------ALRLER----NCRFFSGLQSAAAG 165
Query: 167 AAVLPP--GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKE 224
A++LPP V+ ++DL G + G+CPYF R + A+VV+ Y Y+LDP + + E
Sbjct: 166 ASLLPPECAVHDMEDLMREGSRSGFCPYFHERDAAKDADVVLMPYNYVLDPSLHKQLPFE 225
Query: 225 MQKESVVVFDEAHNIDNV 242
+ +++ DEAHN+ +V
Sbjct: 226 LAN-CILIVDEAHNLPSV 242
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 16/200 (8%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRG 498
D + ++ V SV++TSGTLSP+D + L V K + D + VL RG
Sbjct: 423 DNTRLMRQVVSPLHSVLLTSGTLSPLDQFAAELGMEFQVRLKGKHVIQADQVLGGVLCRG 482
Query: 499 SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS--- 555
++ F RS G L + P G + FF SY+ M+ ++ W
Sbjct: 483 PSGEKLNGGFSFRSSVDYRVGLGMSLANIARNTPGGTLVFFPSYASMNSVVELWRAGSGR 542
Query: 556 --------GILKEIMQHKLVFIETQDVVETTLALDNYRKACDCG--RGAVFFSVARGKVA 605
G+L E+ K +F+E + + + ++K D RGA+ +V RGK++
Sbjct: 543 AGDTKTVWGMLSEL---KPIFVEPNNSNDLPTIVQGFQKEVDTSPLRGAILLAVCRGKIS 599
Query: 606 EGIDFDRHYGRLVIMFGVPF 625
EGIDF ++GR V++ G+P+
Sbjct: 600 EGIDFADNHGRCVLVAGIPY 619
>gi|167527059|ref|XP_001747862.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773611|gb|EDQ87249.1| predicted protein [Monosiga brevicollis MX1]
Length = 812
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 6/190 (3%)
Query: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKM-----SLTRDCICPMVLTRGSDQ 501
+ ++V++ GT+SP+ + L S + + +CP+VLT+ S++
Sbjct: 528 ILQSARAVIVAGGTMSPVTDFVEQLTTQATKSVAVHHFACGHVVPSSHLCPIVLTQTSNR 587
Query: 502 LPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEI 561
P+ F R + R G+ L+ + + VP G+V FF SY Y +++ W G+L++
Sbjct: 588 QPLRLTFSTRQSEAMMRELGESLIRVAATVPAGLVVFFPSYEYEQKLVEFWTRQGVLRKF 647
Query: 562 MQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
+HK +F E + + + L Y A G GA FSV GK++EGI+F GR V+M
Sbjct: 648 ERHKPIFREPRAGKDVDVVLQQYATAIQKG-GAALFSVVGGKLSEGINFKDDLGRCVVMV 706
Query: 622 GVPFQYTLSK 631
G+P+ SK
Sbjct: 707 GMPYPNLHSK 716
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
+++L A ++ C Y+ AR V A +VV Y LL K + S +VV+ DEA
Sbjct: 288 VEELAAMASREKACAYYAARKAVAPAELVVVPYNMLLH-KSTRLASGLQLTNNVVIIDEA 346
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
HN+ + SV+V L GA R+L Q R+KA RL+A+
Sbjct: 347 HNLMDTIANIHSVTVTGDILLGAHRDLLEYCQ---RYKA----RLKAK 387
>gi|405118752|gb|AFR93526.1| CHL1 helicase [Cryptococcus neoformans var. grubii H99]
Length = 853
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 148/603 (24%), Positives = 255/603 (42%), Gaps = 116/603 (19%)
Query: 69 KLIYCTRTVHEMEKTLAEL--KLLHNYQTRHLGPAAKILAIGLS-----SRKNLCVNS-- 119
K+ Y +RT ++ + +EL +Y + P+A+ + G+S SRK LC+N
Sbjct: 216 KVYYTSRTHTQLRQLTSELLKTSFASYDSVPESPSAEAPSHGVSLVPLGSRKQLCINEKI 275
Query: 120 RVLAAENRDS-VDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
R LA + D ++ AC L + CEF A A + T+
Sbjct: 276 RALARKGGDERMNEAC----------LDMQKSGKARCEFL-----PAKADEI-----TML 315
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
D+R +V Y LL + ++ K VVV DEAHN
Sbjct: 316 DVR------------------DTILIVTLPYNLLLQKNSREALGIKL-KNQVVVIDEAHN 356
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA--LRG 296
+ + + ++ L A +S++ Q +RFK RL++ + ++ + LRG
Sbjct: 357 LIDTLLSIHCTTLTSTNLANA---MSQLQQYHQRFKT----RLKSIHFLWIQQVLSLLRG 409
Query: 297 NLPIADAWLSNPALPSDILKEAVPGNIRRAE--HFLHVLRR------------LVQYLRG 342
+ + D ++ + KE+ P +AE ++RR LV YL+
Sbjct: 410 LIRVCDKFIQDAKAQR---KESGPVGKPKAEVLDVNTLMRRIGGGSDQVNPIELVAYLKE 466
Query: 343 RLETENVEKEGPVSFVASITAHAGI-DQKTLRFCYERLHSLMLTLEITDTDEFLHIQTIC 401
+ F + A + D KT R R S+ F ++++
Sbjct: 467 SKLARKIN-----GFFEHVAEQAALKDVKTSRSATARHASITA---------FHNVESF- 511
Query: 402 DFATLVGTYTRGFSII-IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGT 460
+LV G ++ I+ +E P + V++ + S K V + +SV++ GT
Sbjct: 512 -LLSLVDAKDDGRILLSIDDLNESEPVV---VIKYVLLNPSERFKEVVEEARSVILAGGT 567
Query: 461 LSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP------MVLTRGSDQLPVSTKFDMRSDP 514
+ PI + L P + + +L+ + P V++ G + KF R+D
Sbjct: 568 MEPITDF--LQQLFPSIPKDRLSTLSCSHVIPKENLLTQVVSVGPRKSEFEFKFGNRNDE 625
Query: 515 GVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV 574
+ + G +L + +VPDG+V F SY+++D++ A W SG+L+ + + K +F E Q
Sbjct: 626 ALLTDLGAVLQATIGVVPDGVVVFLPSYAFLDKVRALWTKSGLLQRLGERKQLFYEPQTS 685
Query: 575 --VET-----TLALDNYRKACDCGR-----GAVFFSVARGKVAEGIDFDRHYGRLVIMFG 622
VET LA+ + G+ GA+ F+V GK++EGI+F + GR VIM G
Sbjct: 686 GDVETILRDYALAISSCYATSTAGQKSRKTGALMFAVVGGKLSEGINFSDNLGRCVIMVG 745
Query: 623 VPF 625
+PF
Sbjct: 746 LPF 748
>gi|392591953|gb|EIW81280.1| DNA repair helicase [Coniophora puteana RWD-64-598 SS2]
Length = 867
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 131/543 (24%), Positives = 226/543 (41%), Gaps = 56/543 (10%)
Query: 99 GPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFF 158
GP+ L SRK LC+N V A +D CR+ E + C++
Sbjct: 255 GPSTPWRTASLGSRKQLCINDEVKAKHG--DLDEKCRE---------LLEEKGKKRCQYL 303
Query: 159 ENYEKAASAAVLPPGVYT----LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLD 214
E+ A L + + +L A G+ CPY+ +R V A +V Y LL
Sbjct: 304 PPLEEEHRLADLRDQILASPKDIVELAAAGRNSHICPYYGSRKAVPQAELVTLPYNLLLL 363
Query: 215 PKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
+ ++ + VV+ DEAHN+ + S S+ TL A LS++ +RF+
Sbjct: 364 KSAREALGIDLTGQ-VVIIDEAHNLIPTLLSISSSSLSFGTLSAA---LSQVTVYYKRFR 419
Query: 275 ATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLR 334
+ RLVE ++ + + S P+ + + + +++L
Sbjct: 420 NRFSPTHALHLKRLVEFMSSLQRF-LKEKAASKPSTQEAMTVPDLGCALGHKVEGINLLE 478
Query: 335 RLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEF 394
+V+YL+ T V ++ VS A +Q++ Y R +
Sbjct: 479 -IVEYLK----TSKVARK--VSGYCEKEAIRKSEQESQHRTYTR----------GKGNPP 521
Query: 395 LHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSV 454
LH I F T + + +I+ R D ++ + + + V D +SV
Sbjct: 522 LH--AIESFITGISAASEDGRLILSLG--RESDASDSEIKYQLLNPATIFRDVVDVARSV 577
Query: 455 VITSGTLSPI-DLYPRLLNFHPVVSRSFKMSLTRDCICP------MVLTRGSDQLPVSTK 507
V+ GT+SPI D+ +L P +S + + + I P +++ +G +
Sbjct: 578 VLAGGTMSPISDVTNQLF---PYLSDASLSTFSCGHIVPQSHVQALLVGKGPSGRTLDFS 634
Query: 508 FDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLV 567
F + D + G+ + V++VP G+V FF SY+Y+ W SGI ++ + K +
Sbjct: 635 FGNQKDKQLVNELGRTIANFVNLVPGGMVVFFPSYTYLYFAKEMWGTSGIWDQLARKKQL 694
Query: 568 FIETQDVVETTLALDNYRKAC-----DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFG 622
FIE ++ L Y A D +GA+ F+V GKV+EG++F R V++ G
Sbjct: 695 FIEPREATGVESLLRAYSAAAITQPDDGTKGALLFAVVGGKVSEGLNFSDDMARAVMVVG 754
Query: 623 VPF 625
+PF
Sbjct: 755 LPF 757
>gi|332030654|gb|EGI70342.1| Regulator of telomere elongation helicase 1-like protein
[Acromyrmex echinatior]
Length = 976
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 101/177 (57%), Gaps = 4/177 (2%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+SVV+TSGTLSP+ + L V +T++ +C VL++G D P+++ ++ R
Sbjct: 471 RSVVLTSGTLSPLKPFISELGIPIAVQLENPHIVTKEQVCVGVLSQGPDNHPLNSSYNTR 530
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE- 570
+DP + G+ + IVP G++ FF SY M + W + G+ +I + K +++E
Sbjct: 531 NDPKYIASLGRTVYNFSCIVPHGLLIFFPSYPIMKKCRDEWQNMGLWTQIAERKPIYVEP 590
Query: 571 -TQDVVETTLALDNYRKACDCG-RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
++D + + Y+K D +GAVF +V RGKV+EG+DF GR V++ G+PF
Sbjct: 591 NSKDGFVNVMN-EYYQKIKDPSCKGAVFMAVCRGKVSEGLDFANANGRAVLIIGLPF 646
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 125/290 (43%), Gaps = 66/290 (22%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK- 63
+ D+ V FP+ YP Q YM ++ L H +LE PTGTGKT+ LL S++L+K
Sbjct: 6 INDIIVTFPF-KPYPVQEEYMKKVIECLQNGQHGVLESPTGTGKTLNLLCSSLSWLLTKK 64
Query: 64 -----------------------------------PENPV-------KLIYCTRTVHEME 81
P+N K+IY +RT ++
Sbjct: 65 AQLQAQVIAGAIEKKDFGGNFFKYLTSGLEKAAGVPDNVQSFGWAIPKIIYASRTHSQLS 124
Query: 82 KTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
+ + ELK +H+ A L SR LC++ V + + C + S
Sbjct: 125 QAMYELK---KTSYKHVATAV------LGSRDQLCIHPEVSKETSSFNKIHMCHAKVKS- 174
Query: 142 VRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
TC +F N E V V ++DL G++ CPYFLA+ + Q
Sbjct: 175 -----------RTCFYFNNVEARKDDPVFKQEVLDIEDLVKVGQKHKCCPYFLAKELKQN 223
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSV 251
A++V Y YLLDPK ++Q +VV+ DEAHN++ VC EA S+ +
Sbjct: 224 ADIVFMPYNYLLDPKTRRSQGIDLQ-NTVVLLDEAHNVEKVCEEAASLQI 272
>gi|15220007|ref|NP_178107.1| chromosome transmission fidelity protein 1 [Arabidopsis thaliana]
gi|12324592|gb|AAG52253.1|AC011717_21 putative helicase; 55525-51977 [Arabidopsis thaliana]
gi|332198199|gb|AEE36320.1| chromosome transmission fidelity protein 1 [Arabidopsis thaliana]
Length = 882
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 100/187 (53%), Gaps = 12/187 (6%)
Query: 447 VFDRFQSVVITSGTLSPID-LYPRLLNFHPVVSRSF---KMSLTRDCICPMVLTRGSDQL 502
V D +V++ GTL PI+ RL + P F + + I P+ ++ G
Sbjct: 553 VVDEAHAVILAGGTLQPIEETRERLFPWLPSNQLQFFSCSHIVPPESIMPIAVSHG---- 608
Query: 503 PVSTKFDM----RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGIL 558
P FD RS G+ + G L+ +V++VP+GI+ FF S+ Y ++ W++SGIL
Sbjct: 609 PSGQSFDFSHSSRSSIGMIQELGLLMSNLVAVVPEGIIVFFSSFEYETQVHTAWSNSGIL 668
Query: 559 KEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLV 618
+ I++ K VF E + E L +Y++A + RGA+ +V GKV+EGI+F R V
Sbjct: 669 RRIVKKKRVFREPRKNTEVEAVLRDYKEAIESERGAIMLAVVGGKVSEGINFSDSMCRCV 728
Query: 619 IMFGVPF 625
+M G+P+
Sbjct: 729 VMVGLPY 735
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 22/184 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ +C+RT ++ + + EL R A K+ + L SRKNLC+N VL N
Sbjct: 184 KVFFCSRTHSQLSQFVKEL--------RKTVFAKKLKVVCLGSRKNLCINEDVLKLGNVT 235
Query: 129 SVDAAC---RKRTASWVRALAAENPNIET--------CEFFENY--EKAASAAVLPPGVY 175
++ C +K+ S V N+ C + ++ A
Sbjct: 236 RINERCLDLQKKKISQVSKKKNLGANVRIVRTKASCRCPMLRKHKLQREFKAESFQQEAM 295
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
++DL G++ CPY+ +R M A++V+ YQ LL + + K SVV+ DE
Sbjct: 296 DIEDLVQLGREMRTCPYYGSRRMAPAADLVILPYQSLLSKSSRESLGLSL-KNSVVIIDE 354
Query: 236 AHNI 239
AHN+
Sbjct: 355 AHNL 358
>gi|392560811|gb|EIW53993.1| DNA repair helicase [Trametes versicolor FP-101664 SS1]
Length = 875
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 133/537 (24%), Positives = 235/537 (43%), Gaps = 43/537 (8%)
Query: 106 AIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAA 165
A+ L SRK LC++ R+ E +D ACR+ + P +E E + +
Sbjct: 248 AVSLGSRKQLCIHERL--REKASDLDEACRQMLGEKGKKRCPHLPTVE--EETKMLDLRD 303
Query: 166 SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM 225
+P + +DL G+ CPYF AR + A +V+ Y LL + ++
Sbjct: 304 QILAVPKDI---EDLFLTGQAADTCPYFGARKAIPQAQLVLLPYNLLLQRTAREALGIDL 360
Query: 226 QKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS-RINQEIERFKATDAGRLRAE 284
+ VV+ DEAHN+ + + + + +TL A LS +++ R T A L+
Sbjct: 361 TGQ-VVIIDEAHNLTSTLLSLSTTRLPLRTLVNARHQLSIYLSRFRNRLSTTHALHLKRL 419
Query: 285 YNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL 344
N L++ L + A+ W + L D A G R +E + L+Q L +
Sbjct: 420 MN-LLDAL-----VQYAEEW-RDAQLKVDKGNGAA-GKARASEVEVMTSAELLQRLGRKA 471
Query: 345 ETEN---VEKEGPVSFVASITAHAGIDQKTL-RFCYERLHSLMLTLEITDTDEFLHIQTI 400
E N VEK S +A + G KTL + + + L + T LH +
Sbjct: 472 EGVNLLEVEKYLRESKIARKIS--GYSVKTLEKAAGQDIAKLAKLARLASTTPPLH--AV 527
Query: 401 CDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGT 460
F T + + + + D ++ ++ + + + V D ++V++ GT
Sbjct: 528 ESFITALSASSDDGRVTLSMVDGQVE------IKYQHLNPATYFQEVIDSARAVILAGGT 581
Query: 461 LSPID-LYPRLLNFHP---VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGV 516
+SPID + +L + P + + S + + + +VL +G + K+ R D G+
Sbjct: 582 MSPIDDVVHQLFSALPADRLSTFSCGHIIPPENLQTLVLKKGPRGGELQFKYQQRGDEGL 641
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVE 576
G++L+ ++VP G+V F SY++++ + W G+L+++ K VF E Q E
Sbjct: 642 IAELGQILLNFTNVVPGGMVVFVPSYAFLNTVTKQWQAGGLLEKLNAKKKVFSEPQQSNE 701
Query: 577 TTLALDNYRKACDCG--------RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L +Y G RGA+ F+V K++EG++F R V++ G+PF
Sbjct: 702 VEAVLRDYSAQIQSGDDSAGGKKRGALLFAVVGAKLSEGLNFADDLARAVVIIGLPF 758
>gi|8886948|gb|AAF80634.1|AC069251_27 F2D10.21 [Arabidopsis thaliana]
Length = 1273
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 136/559 (24%), Positives = 219/559 (39%), Gaps = 100/559 (17%)
Query: 110 SSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAV 169
+SRK+ C N VL +D+VD CR L + NI+ C F+N K S
Sbjct: 214 ASRKHYCTNRHVLG---KDNVDDECR--------LLLKDKANIQ-CSEFKNVNKITSHPS 261
Query: 170 LPP----GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM 225
L P V+ ++DL GK CPYF + M + A +V Y Y+++P + + ++
Sbjct: 262 LQPRGHNEVHDIEDLVKVGKNVRGCPYFASWSMAENAQLVFCPYSYIVNPVIRAGVEVDL 321
Query: 226 QKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR---INQEIERFKATD----- 277
K ++++FDEAH + + I S + T+ +++R + E+E+
Sbjct: 322 -KGAIIIFDEAHMLLMLMIRP---STKSFTVHSNMEDIAREAELQNELEQMSVAQPMIYQ 377
Query: 278 -----AGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHV 332
L + R + LA R +W + AL +E NI R E F +
Sbjct: 378 PLCEVVEGLISWIGRKKDSLAKRDFQHYFSSWTGDKAL-----RELEESNITR-ECFPIL 431
Query: 333 LRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTD 392
L + +R E E +S ++ +T T F H L D
Sbjct: 432 LECFTKAIRTSKEAEMESDMLYLSGISVLTLEELFSSLTYFFSRNGSHIL---------D 482
Query: 393 EFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQ 452
L +Q GT+T FS L C + ++ K + D
Sbjct: 483 YQLGLQRSTKRGDPSGTWTHTFS-------------------LWCMNPAVVFKDLADISL 523
Query: 453 SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDC-ICPMVLTRGSDQLPVSTKFDMR 511
SV++TSGTLSP++ + L S + + + ++ G P++ +
Sbjct: 524 SVILTSGTLSPMNSFSSELGMQFGTSLEAPHVIDPNMQVWAGAISNGPSNYPLNASYKTA 583
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE- 570
GK L E+ +IVP G + FF SY M+++ W ++ + K +F+E
Sbjct: 584 DAYSFQDALGKSLEEICTIVPGGSLVFFPSYKLMEKLCMRWRETEQWSRLCLKKDLFVEP 643
Query: 571 ---TQDVVETTLA------------LDNYRKACDCG-----------RGAVFFSVARGK- 603
QD ++ L + R+A G +GA F +V RGK
Sbjct: 644 RGGAQDEFDSVLKGYYDSIRGKNKIIGRNRRAKKAGPIKTETQDDSKKGAAFLAVCRGKS 703
Query: 604 ----VAEGIDFDRHYGRLV 618
V+EGIDF R V
Sbjct: 704 MLLQVSEGIDFADDNARAV 722
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDA---KGHC--LLEMPTGTGKTIALLSLI 56
++++ + V FPY Y Q ++M + LD GHC LLE PTGTGK+++LL +
Sbjct: 26 VYQIGGLQVEFPY-QPYGTQLAFMSRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSV 84
Query: 57 TSY 59
++
Sbjct: 85 LAW 87
>gi|300120242|emb|CBK19796.2| unnamed protein product [Blastocystis hominis]
Length = 759
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 136/593 (22%), Positives = 250/593 (42%), Gaps = 103/593 (17%)
Query: 54 SLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRK 113
S+++S P+ + YC+RT ++ + E H A + + R+
Sbjct: 149 SIVSSVFTLSPQ----IYYCSRTHSQLSQVFQEF--------LHSAWAEDVQCSCIGGRR 196
Query: 114 NLCVNSRV--LAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASA--AV 169
+ C++ V L + + S + +R S + E C F N E+ S V
Sbjct: 197 SFCIHPTVKRLPTDAQMSDECLFLQRNRSRGK---------EGC-LFHNREREESIRDEV 246
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
L + ++DL + +++ CPY+ +R + + +V+ Y +L+ K + ++ K
Sbjct: 247 LTTNL-EIEDLVQYAEKEKGCPYYASRKAIPYLKLVLLPYNLILNKKSREALGIDL-KNQ 304
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
VV+FDEAHN+ N + S +V TL + + S+I+ +R+ + RL +E + +
Sbjct: 305 VVIFDEAHNLINAIGDLFSPTV---TLSMLSSSHSQIDAYYQRY----SDRLSSESHSFI 357
Query: 290 EGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHF----------LHVL--RRLV 337
+ L+ L L+ PS+ + R +H LH + +R+V
Sbjct: 358 --IHLQTILKALSHLLTTK--PSNFGMVNIFTVNRFIQHLHLESINLFDILHFITSKRIV 413
Query: 338 QYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHI 397
Q L G ++T + + PVS ++T +L L + D
Sbjct: 414 QKLNGFVDTLGEDGKPPVSHFPAVT------------------DFILALTNDNED----- 450
Query: 398 QTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVIT 457
A +V +Y++ P L+ + S+ K + D +SV+IT
Sbjct: 451 ------ARVVVSYSKD---------------NGPFLRFLLLNPSVYFKEIVDECRSVIIT 489
Query: 458 SGTLSPID-----LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
GTL P L+P L +VS S L+ D + +T + + + F R
Sbjct: 490 GGTLQPFSEFSSQLFPHLSQ-DRIVSLSLPHILSPDHVGAFYVTHTATRQEMRFDFSNRE 548
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ 572
+P + + L + VP G+V FF S+S + + + +G + + K +F E +
Sbjct: 549 NPSLLSDLASKLGILCRTVPRGLVVFFPSFSMLQTTLRFLHSTGKFSSLNELKPIFSEER 608
Query: 573 DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + A +Y K +GA+ F+V GK++EGI+F GR V + G+P+
Sbjct: 609 EK-DVFAAYSSYLKD-HPSKGALLFAVIGGKLSEGINFSDDLGRCVAIVGMPY 659
>gi|154419164|ref|XP_001582599.1| helicase [Trichomonas vaginalis G3]
gi|121916835|gb|EAY21613.1| helicase, putative [Trichomonas vaginalis G3]
Length = 1428
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 142/298 (47%), Gaps = 46/298 (15%)
Query: 4 KLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK 63
K+ + V FPY+ Y Q M + + + + + L+E PTGTGKT+ALLS +Y
Sbjct: 6 KIMGIDVLFPYEKPYKSQEVVMEKTIKGIASNHNALIESPTGTGKTLALLSASLAYQHVD 65
Query: 64 PENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLA 123
P+ +IY +RT ++++ ++E K L K+ L+SRK LC+N V
Sbjct: 66 PKLD-SIIYTSRTHTQLKQVISEYKRL----------PYKVQMTVLASRKRLCINDEVRE 114
Query: 124 AENRD----------SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG 173
+ N D +V+ +++ +V A + P T E LP
Sbjct: 115 SPNTDINCYILTHPKTVNGVTQEQCPYFVHAQVEKAPRSLTIE-----------GDLP-- 161
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
+ L++L +GK+ CPY+LA+++ A ++ Y Y LD I S E S+++F
Sbjct: 162 KFDLEELFQYGKRHAACPYYLAKNLKSSAKIIFSPYNYYLD----TIFSSEFLTNSILIF 217
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE-YNRLVE 290
DEAHNI+N A +++ + E L+RIN ++ + R + YN +++
Sbjct: 218 DEAHNIENA---ARNIATFKMPFEL----LTRINISAKQIAERKSDRFGVKIYNNMIK 268
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 100/195 (51%), Gaps = 7/195 (3%)
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP 492
++SC D S+ + +S+++ SGTLSP + L + S ++ D +
Sbjct: 375 FEISCLDPSVVFEQAGKSAKSIILASGTLSPQQSFESELGLPFPIKASVPHVISPDQVK- 433
Query: 493 MVLTRGSDQLPVSTKFDMRSDPG--VARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
+ G++ +++ FD G + ++G+ ++ +V G++ F SY+ ++++
Sbjct: 434 LYQIVGTNGRRMTSLFDEMEKRGKQILLDFGRGVLSIVKNTDGGVLVFMPSYAVREKMMK 493
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610
W +GI ++I + + +F E Q + + +Y+ +C AV F++ +G + EGIDF
Sbjct: 494 VWRKAGIAEQIYKERWIFNEEQGK-DMKKVISDYK---NCKGRAVLFAICKGSIGEGIDF 549
Query: 611 DRHYGRLVIMFGVPF 625
++ R V+ FG+P+
Sbjct: 550 SDYHARAVVCFGIPY 564
>gi|432960238|ref|XP_004086424.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Oryzias latipes]
Length = 1167
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 145/319 (45%), Gaps = 65/319 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY----- 59
L VTV FP+ Y Q YM ++ + L K + +LE PTGTGKT+ LL ++
Sbjct: 6 LHGVTVDFPFPP-YDCQKDYMAKVLQCLQQKVNGVLESPTGTGKTLCLLCATLAWREHFR 64
Query: 60 -VLS--------KPENPV-------------------------KLIYCTRTVHEMEKTLA 85
+S K EN K+IY +RT ++ + +
Sbjct: 65 DTISACKIAERLKGENMFPNTTLASWGTAATDGDKQAYYLDVPKIIYASRTHSQLAQVIG 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ K+ +G SR+ LC+N V+ E+ CR + ++
Sbjct: 125 EL--------RNTSYRPKVCVLG--SREQLCINPEVMRQESNHVKVHMCRGKVST----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C ++ N ++ ++ L + ++DL FG +Q CPY+L+R + Q A+++
Sbjct: 170 -------RSCLYYNNVDERSTDKDLVNSILDVEDLVKFGNKQKVCPYYLSRSLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLDPK + E+ +VV+FDEAHN++ +C E+ S + + A + R
Sbjct: 223 FMPYNYLLDPKSRRAHNIELSG-AVVIFDEAHNLEKMCEESSSFDLTPYDVAAAITAVDR 281
Query: 266 INQEIERFKATDAGRLRAE 284
+ +E+ K T G AE
Sbjct: 282 L--LVEQAKETGGGEFTAE 298
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 2/174 (1%)
Query: 454 VVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSD 513
+++TSGTLSP+ + + VS + RD I V+ RG D +P+S+ FD R
Sbjct: 475 IILTSGTLSPLSSFTSEMRIEFPVSLENSHVIERDQIFVSVVDRGPDGVPLSSAFDRRFV 534
Query: 514 PGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD 573
P + G + +VP G++ FF S+ M++ + W +G I K +F+E +
Sbjct: 535 PENMSSLGNTVANFSRVVPHGLLVFFPSFPLMEKTLDFWKANGHADRIENVKPMFVEPKG 594
Query: 574 VVETTLALDN-YRKACD-CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ +D Y K D +G FF+V RGK +EG+DF + R VI+ G+PF
Sbjct: 595 SGSFSEIIDGYYNKVSDPASKGGSFFAVCRGKASEGLDFADTFSRGVIITGLPF 648
>gi|355785871|gb|EHH66054.1| hypothetical protein EGM_02957 [Macaca fascicularis]
Length = 906
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + S+VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 728
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGRVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDIE 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQAQ-VVIIDEAHN 397
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 398 LIDTITGMHSVEVSGSQLCQAH---SQLLQYMERY----GKRLKAK 436
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 9 TVYFPYD-NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL----LSLITSYVLSK 63
T++FP+ Y Q +M EL R L+A + E PTGTGK+++L LS + + K
Sbjct: 10 TIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDFEQKK 69
Query: 64 PENPVKLI 71
E +L+
Sbjct: 70 REEEARLL 77
>gi|355563978|gb|EHH20478.1| hypothetical protein EGK_03343 [Macaca mulatta]
Length = 906
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + S+VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 728
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGRVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDIE 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQAQ-VVIIDEAHN 397
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 398 LIDTITGMHSVEVSGSQLCQAH---SQLLQYMERY----GKRLKAK 436
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 9 TVYFPYD-NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL----LSLITSYVLSK 63
T++FP+ Y Q +M EL R L+A + E PTGTGK+++L LS + + K
Sbjct: 10 TIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDFEQKK 69
Query: 64 PENPVKLI 71
E +L+
Sbjct: 70 HEEEARLL 77
>gi|307176988|gb|EFN66294.1| Regulator of telomere elongation helicase 1 [Camponotus floridanus]
Length = 978
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+SV++TSGTLSP+ + L V +T+ +C VL++G D P+++ ++ R
Sbjct: 471 RSVILTSGTLSPLKPFISELGIPIAVQLENPHIVTKQQVCVGVLSQGPDNHPLNSSYNTR 530
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE- 570
+DP + G+ + I+P G++ FF SY M + W + G+ +I + K +++E
Sbjct: 531 NDPKYIASLGRTVYNFSCIIPHGLLIFFPSYPIMKKCRDEWQNMGLWTQIAERKPIYVEP 590
Query: 571 -TQDVVETTLALDNYRKACD-CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
++D + + Y+K D +GAVF +V RGKV+EG+DF GR V++ G+PF
Sbjct: 591 NSKDGFVNVMN-EYYQKIRDPSNKGAVFMAVCRGKVSEGLDFANANGRAVLIIGLPF 646
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 125/290 (43%), Gaps = 66/290 (22%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK- 63
+ D+ V FP+ Y Q YM ++ L H +LE PTGTGKT++LL S++L+K
Sbjct: 6 INDIIVSFPF-KPYSVQEEYMRKVIECLQNGQHGVLESPTGTGKTLSLLCSSLSWLLTKK 64
Query: 64 -----------------------------------PENPV-------KLIYCTRTVHEME 81
P+N K+IY +RT ++
Sbjct: 65 AQLQAQVIAGAIEKKDFGGHFFKYLVDGLEKASGVPDNVQSFGWAMPKIIYASRTHSQLS 124
Query: 82 KTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
+ + ELK +H+ A L SR LC++ V + + C + S
Sbjct: 125 QAMYELK---KTSYKHVATAV------LGSRDQLCIHPEVSKEASAFNKIHMCHSKVKS- 174
Query: 142 VRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
TC ++ N E V V ++DL G++ CPYFLA+ + Q
Sbjct: 175 -----------RTCFYYNNVEARKDDPVFKQEVLDIEDLVKIGQKHKCCPYFLAKELKQN 223
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSV 251
A++V Y YLLDPK ++Q +VV+ DEAHN++ VC EA S+ +
Sbjct: 224 ADIVFMPYNYLLDPKTRKSQGIDLQ-NTVVLLDEAHNVEKVCEEAASLQI 272
>gi|452822263|gb|EME29284.1| putative DNA helicase required for mitotic chromosome segregation
CHL1 [Galdieria sulphuraria]
Length = 984
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 3/196 (1%)
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSL-TRDCIC 491
L L C + +++ + + +V++SGTL+P+D + L H + S + ++ +C
Sbjct: 488 LCLWCFNPAVSFSYLQSHSRCIVLSSGTLTPMDSFSSELGIHFDIMNSLPHVIDVKNQVC 547
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
+ + G + + + F S G+ ++E ++PDG++CFF SY ++ ++
Sbjct: 548 AIASSCGPNSVDYDSTFAASSSIAYHDCLGQSILEYCRVIPDGVICFFPSYRLLESVVRR 607
Query: 552 WNDSGILKEIMQHKLVFIE--TQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609
W SG KE+ K VFIE D V L +Y A +GA+F +V RGKV+EGID
Sbjct: 608 WRQSGYWKELESCKQVFIEPCQNDRVYFDNILLSYYHAIHKKQGALFLAVCRGKVSEGID 667
Query: 610 FDRHYGRLVIMFGVPF 625
F Y R VI+ G+P+
Sbjct: 668 FKDEYARGVIIVGLPY 683
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 34/230 (14%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
P K+ + TRT ++++ + EL+ +Y+ P IL SR C++++V+ ++N
Sbjct: 164 PPKIFFATRTHTQIDQVVQELRRT-SYR-----PKMDILG----SRDRYCIHNKVIRSQN 213
Query: 127 RDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG----VYTLQDLRA 182
R+ C+K L E +C + EK + L V+ ++DL
Sbjct: 214 RNE---ECKK--------LLEE----RSCSYAFGVEKVHNIKELSENHIHQVWDIEDLVR 258
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
GK+ CPYF ++ +++ A ++ Y YLLDP V + E+ S+V+ DEAHNI++V
Sbjct: 259 IGKRHNLCPYFSSQELMKTAELIFCPYSYLLDPVVRNAMQVELSN-SIVILDEAHNIEDV 317
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGL 292
C EA S V + LE L ++ + T GR + N V G+
Sbjct: 318 CREAASCEVFIEELEQVRTELETLDMN----QNTSMGRHLSLVNSFVSGV 363
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F++ + FPY+ YP Q+ +M ++ RA + + LLE PTGTGK++ALL + ++
Sbjct: 1 MPFQVYGTEIEFPYEP-YPVQFVFMEKILRACENSQNALLESPTGTGKSLALLCAVLAW- 58
Query: 61 LSKPENPVKL 70
K +N ++L
Sbjct: 59 QKKTKNKMQL 68
>gi|383410919|gb|AFH28673.1| putative ATP-dependent RNA helicase DDX11 isoform 1 [Macaca
mulatta]
Length = 906
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + S+VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 728
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGRVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDIE 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQAQ-VVIIDEAHN 397
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 398 LIDTITGMHSVEVSGSQLCQAH---SQLLQYMERY----GKRLKAK 436
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 9 TVYFPYD-NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL----LSLITSYVLSK 63
T++FP+ Y Q +M EL R L+A + E PTGTGK+++L LS + + K
Sbjct: 10 TIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDFEQKK 69
Query: 64 PENPVKLI 71
E +L+
Sbjct: 70 REEEARLL 77
>gi|402885129|ref|XP_003906018.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein 8
[Papio anubis]
Length = 845
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 96/192 (50%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 548 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 607
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + S+VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 608 NQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 667
Query: 561 IMQHKLVFIETQ---DVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 668 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGRVTGALLLSVVGGKMSEGINFSDN 727
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 728 LGRCVVMVGMPF 739
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 17/152 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 201 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 252
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 253 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDIE 312
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQ 210
L A GK+ CPY+ +R + A +VV YQ
Sbjct: 313 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQ 344
>gi|297261772|ref|XP_001114510.2| PREDICTED: putative ATP-dependent RNA helicase DDX11-like
protein-like isoform 4 [Macaca mulatta]
Length = 910
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 613 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 672
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + S+VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 673 NQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 732
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 733 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGRVTGALLLSVVGGKMSEGINFSDN 792
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 793 LGRCVVMVGMPF 804
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 231 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 282
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 283 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDIE 342
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 343 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQAQ-VVIIDEAHN 401
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 402 LIDTITGMHSVEVSGSQLCQAH---SQLLQYMERY----GKRLKAK 440
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 9 TVYFPYD-NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL----LSLITSYVLSK 63
T++FP+ Y Q +M EL R L+A + E PTGTGK+++L LS + + K
Sbjct: 14 TIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDFEQKK 73
Query: 64 PENPVKLI 71
E +L+
Sbjct: 74 REEEARLL 81
>gi|50312507|ref|XP_456289.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636409|sp|Q6CIF0.1|CHL1_KLULA RecName: Full=ATP-dependent RNA helicase CHL1; AltName:
Full=Chromosome loss protein 1
gi|49645425|emb|CAG98997.1| KLLA0F27181p [Kluyveromyces lactis]
Length = 807
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 126/571 (22%), Positives = 241/571 (42%), Gaps = 78/571 (13%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
++P+K+ + +RT ++ + ++L L + +I + L+SRK LC++++V
Sbjct: 198 KSPLKIYFSSRTHSQLTQFASQLTLPSFPPSSPTLEKERIKFLPLASRKQLCIHAKVSKL 257
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT----LQDL 180
++ D ++ AC E + C+F+ N S+ ++ ++DL
Sbjct: 258 KS-DLINDAC------------VETVKRQECQFYTNSRDLISSKQFRDYTFSEISDIEDL 304
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
G CPY+ +R ++ A +V YQ++L ++ + + K+S+V+ DEAHN+
Sbjct: 305 VQLGHSLHVCPYYSSRTALEGAEIVTLPYQHILSFEIRESLGINL-KDSIVIIDEAHNLM 363
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
+ S + ++ + L +I + +FK G+ R V + L L I
Sbjct: 364 DTITSIYSCEISLSDIK-ICKKLMKI--YLNKFKRKLNGKNR------VNIMKLMKLLDI 414
Query: 301 ADAWLSNPALPSDILKEAVPGNI-RRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVA 359
A++ + KE P ++ R + L + LV Y+RG ++ +
Sbjct: 415 LQAFIESHFEKG---KEISPQSMFRDSNADLLNIHELVTYMRGSKIAYKIDSYADSKLKS 471
Query: 360 SITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE 419
+ + Q L ++ +L+L + G++
Sbjct: 472 DESNTNSVKQPILF----KISKFVLSL---------------SNPSFEGSFF-------- 504
Query: 420 PFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479
F+E M +++ + + K + + + V++ GT+ P + + N P V
Sbjct: 505 -FEEGM------IIKYMLLEPNQIFKTIVNDSKCVILAGGTMQPTSEF--IENLLPFVPS 555
Query: 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDM----RSDPGVARNYGKLLVEMVSIVPDGI 535
+ + + I P D VS F+ R++ V L+E+ VP GI
Sbjct: 556 KDIVQFSCNHIIP---ESNLDTFIVSEGFNFNYESRNNESVMCKLYDFLLELGCRVPHGI 612
Query: 536 VCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKAC-DCGRGA 594
V FF SY Y++ +I W I +++ +K +F ET + L Y D +GA
Sbjct: 613 VVFFPSYGYLEHVIKFWQLEEIFEKLSMNKRIFYETPGGSDI---LPQYSSTILDKKKGA 669
Query: 595 VFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
FSV GK++EGI+F + R V+M G+P+
Sbjct: 670 FLFSVVGGKLSEGINFQDNLARAVVMVGLPY 700
>gi|340518246|gb|EGR48488.1| predicted protein [Trichoderma reesei QM6a]
Length = 857
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 133/595 (22%), Positives = 243/595 (40%), Gaps = 87/595 (14%)
Query: 69 KLIYCTRTVHEMEKTLAELKLL--------HNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
++ Y +RT ++ + ++EL+ + + P + + LSSR+ LC+N
Sbjct: 188 RIYYTSRTHSQLSQFISELRRPAFPPSLPPSVAKASDVSPTEPVKLLPLSSRQKLCINPF 247
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + +++ C + + + + P E + +A A + ++DL
Sbjct: 248 VARLGSVQAINDRCAELQQAKSSSKCSFVPKEELLSQTHQFRDSALATI-----PDIEDL 302
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI- 239
GK CPY+ +R + A ++ Y LL + +++ +VV+ DEAHNI
Sbjct: 303 HHLGKSLSICPYYASRVALPGAEIITLPYPLLLQQSAREALGIKLEG-NVVIIDEAHNIL 361
Query: 240 ---DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRG 296
NV + +S R+ + + R ++++ + GR+ R+++GL+
Sbjct: 362 DAISNVHAAEIQLSDLRRGRQMLGVYVKRFGKKLKGINRVNVGRV----GRIIDGLS--- 414
Query: 297 NLPIADAWLSNPALPSDILKE---AVPGNIRRAEHFLHV-LRRLVQYLRGRLETENVEKE 352
WL L E P ++ R + + + L+QY++ +E
Sbjct: 415 ------EWLEGALKFKVCLDEHGIVDPNDLTRHKGIDQMNIYELIQYIQESKLAYKIE-- 466
Query: 353 GPVSFVASITAHAGIDQ----KTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVG 408
S+VA + A K L S ++ L ++ + Q + AT V
Sbjct: 467 ---SYVAHVEAEGDSSNSGPPKAATPVLHTLVSFLIALTNLSSEGRIFYQKVHGAATDVK 523
Query: 409 -TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY 467
TY +++ P + A V ++V++ GT+SP Y
Sbjct: 524 LTY-----LLLSP--------------------THAFSSVASSARAVILAGGTMSPFQDY 558
Query: 468 PRLL--NFHP--VVSRSFKMSLTRDCICPMVLTRGSD-QLPVSTKFDMRSDPGVARNYGK 522
L P V S S + + +C L + P F R + + G
Sbjct: 559 KDQLFPTLEPGKVTSLSCGHVIPPENLCVWTLASSNPASPPFEFSFKQRGNREMMTQLGL 618
Query: 523 LLVEMVSIVPDGIVCFFVSYSYMDEIIATW------NDSGILKEIMQHKLVFIE-----T 571
++ + +IVPDG+V FF SY Y+DEI+ W + I + K VF + +
Sbjct: 619 AILNVCNIVPDGVVVFFPSYGYLDEIVKVWQQRQGESSQTIWDRLQARKSVFRDSKGESS 678
Query: 572 QDVV-ETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+DV+ + + A+ R A D GA+ SV GK++EGI+F GR V++ G+P+
Sbjct: 679 EDVLRDYSQAILGVRPAGDKRTGALLLSVVGGKMSEGINFSDRLGRCVMVVGLPY 733
>gi|410898938|ref|XP_003962954.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Takifugu rubripes]
Length = 1074
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 131/281 (46%), Gaps = 61/281 (21%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSL--------- 55
L VTV FP+ Y Q YM ++ L + + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVNFPF-TPYDCQKDYMTKVIECLQKRNNGVLESPTGTGKTLCLLCATLAWREQLK 64
Query: 56 ---------------------ITSY--VLSKPENPV-----KLIYCTRTVHEMEKTLAEL 87
ITS+ V + E K+IY +RT ++ + + EL
Sbjct: 65 DQISRKMIERRLGGETSQNIPITSWGSVAADGEATCYTDIPKIIYASRTHSQLAQVIKEL 124
Query: 88 KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAA 147
K N R KI +G SR+ LC+N V+ E+ CR++ ++
Sbjct: 125 K---NTSYR-----PKISVLG--SREQLCINQEVMRQESSHVKVHMCRRKVST------- 167
Query: 148 ENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVY 207
+C F+ N E+ ++ L + ++DL FG ++ CPY+L+R + Q A+++
Sbjct: 168 -----RSCPFYNNTEEISTDRELTHSILDVEDLVKFGNKKRVCPYYLSRSLKQEADIIFM 222
Query: 208 SYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
Y YL+DPK + E+ +VV+FDEAHN++ C E+ S
Sbjct: 223 PYNYLVDPKSRRAHNIELNG-AVVIFDEAHNLEKTCEESTS 262
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 102/197 (51%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
+L C +++ + ++ + +++TSGTLSP+ + + VS + RD I
Sbjct: 442 ILSYWCFSPGFSMQDLVNQGVRCIILTSGTLSPLSSFTSEMRIEFPVSLENSHVIDRDQI 501
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
V+ RG D + +S+ FD R P + G + + +VP G++ FF S+ M++++
Sbjct: 502 FVSVVDRGPDGVQLSSAFDKRFVPENMASLGNTVANLTRVVPHGLLVFFSSFPLMEKMLE 561
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAEGI 608
W +G + I K +F+E + T +D Y + +G FF+V RGK +EG+
Sbjct: 562 FWRANGQAERIDSLKPIFVEPKGKANFTEVIDGYYNKVNDPQTKGGSFFAVCRGKASEGL 621
Query: 609 DFDRHYGRLVIMFGVPF 625
DF +GR VI+ G+PF
Sbjct: 622 DFADTFGRAVIITGLPF 638
>gi|66807703|ref|XP_637574.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
gi|60465999|gb|EAL64066.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
Length = 1078
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 104/188 (55%), Gaps = 25/188 (13%)
Query: 452 QSVVITSGTLSPIDLYPRLL-----------NFHPVVSRSFKMSLTRDCI-CPMVLTRGS 499
+SVV+TSGTLSP+ +P L N + R++ +L+ ++ T G
Sbjct: 802 RSVVLTSGTLSPLYSFPMELAAKFPISAEMGNLPDIAQRAWIGTLSHGVKGTKLICTHGP 861
Query: 500 DQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILK 559
S D + + G+ +++ + ++P G++CFF SY +++++++ W+++GILK
Sbjct: 862 -----SEGLDFQD------SLGETILQHIELIPSGVLCFFPSYGFLEKLLSRWDETGILK 910
Query: 560 EIMQHKLVFIETQDVVETTLALDNYRKACDC--GRGAVFFSVARGKVAEGIDFDRHYGRL 617
+I K F E ++ E LDNYR+ +GA+ F+V RGKV+EGIDF Y R
Sbjct: 911 KINAKKRYFYEPKNQREFIETLDNYREEIKQRPNKGAILFAVCRGKVSEGIDFSDEYARG 970
Query: 618 VIMFGVPF 625
VI+ G+P+
Sbjct: 971 VIVVGIPY 978
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 33/192 (17%)
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV- 121
K ++P + +C+RT ++++ ELK P + + L+SR C+N +
Sbjct: 423 KKKSPT-IFFCSRTHSQIKQLTGELKKT---------PYRPNMVV-LASRDQYCINPLLK 471
Query: 122 -----LAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT 176
L + +D CR + +LA ++ +F +K V+
Sbjct: 472 DVPKKLEKCKKLLLDHGCRFKKTEQQTSLA------KSSDFLGGGKKE---------VWD 516
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
++DL G+ CPYF +R M++ A+++ Y YL+DP++ + ++ S+V+FDEA
Sbjct: 517 IEDLMEAGQAHSECPYFASRDMIEKADLIFCPYNYLIDPQIRKSFADKVAG-SIVIFDEA 575
Query: 237 HNIDNVCIEALS 248
HNI++ +E S
Sbjct: 576 HNIEDALMETSS 587
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
++K+ + V FP+ Y Q S M + LD+K +C+LE PTGTGKT++LL
Sbjct: 190 VYKIGNYKVKFPF-KPYACQASMMSRILEGLDSKENCILESPTGTGKTLSLL 240
>gi|154341304|ref|XP_001566605.1| putative helicase [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134063928|emb|CAM40119.1| putative helicase [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 954
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 124/259 (47%), Gaps = 42/259 (16%)
Query: 4 KLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK 63
+ +TV FP+D YP Q +M + L + LLE PTGTGKT+ LL +++ +
Sbjct: 6 NVSGITVSFPFDP-YPAQVEFMRSVVECLQHGFNGLLESPTGTGKTLCLLCSTLAWIAAT 64
Query: 64 PENPV-----------------KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILA 106
++ + K++YC+RT ++ + + EL R A +
Sbjct: 65 SQDAIFRPTSGREQKGRGMHTHKVVYCSRTHAQLTQVVREL--------RRTSYAQRFTM 116
Query: 107 IGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAAS 166
L SR+++C+N V + + + C L +E C FF + AA+
Sbjct: 117 AVLGSREHMCLNKEVTRLPSSQAQNTMCS--------VLRSER----NCRFFRGLQSAAA 164
Query: 167 AA-VLPPG--VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISK 223
A +LPP V+ ++DL G + G+CPYF R + A+VV Y Y+LDP + +
Sbjct: 165 GAGLLPPECVVHDMEDLMREGSRSGFCPYFHERDAAKDADVVFLPYNYILDPLLQKQLPF 224
Query: 224 EMQKESVVVFDEAHNIDNV 242
E+ + +++ DEAHN+ +V
Sbjct: 225 EL-RNCILIVDEAHNLPSV 242
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 16/188 (8%)
Query: 451 FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM 510
S ++TSGTLSP+D + L V + D + VL RG ++ F
Sbjct: 435 LHSTLLTSGTLSPLDQFAAELGVEFQVRLKGSHVIQPDQVLGGVLCRGPSGEKLNGGFSY 494
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS-----------GILK 559
RS G L + P G + FF SY+ M+ ++ W G+L
Sbjct: 495 RSSVDYRVGLGMSLANIARNTPGGTLVFFPSYAAMNSVVELWRAGSGRAGDTKTVWGLLS 554
Query: 560 EIMQHKLVFIETQDVVETTLALDNYRKACDCG--RGAVFFSVARGKVAEGIDFDRHYGRL 617
E+ K +F+E + + + ++K D RGA+ +V RGKV+EGIDF ++GR
Sbjct: 555 EL---KPIFVEPNNSNDLPTIVQGFQKEVDTSPLRGAILLAVCRGKVSEGIDFADNHGRC 611
Query: 618 VIMFGVPF 625
V + G+P+
Sbjct: 612 VFVTGIPY 619
>gi|242057873|ref|XP_002458082.1| hypothetical protein SORBIDRAFT_03g026670 [Sorghum bicolor]
gi|241930057|gb|EES03202.1| hypothetical protein SORBIDRAFT_03g026670 [Sorghum bicolor]
Length = 759
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 11/205 (5%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
L C + LA++ +S+++TSGTLSP+D LN V ++ D I
Sbjct: 433 TLSWWCFNPGLAMEEFLKLGVRSIILTSGTLSPLDSLAMELNLEFPVRLENPHVISSDQI 492
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
V+ G +++ + MR+ + G +V IVPDG++ FF SYS MD +
Sbjct: 493 WVGVVPVGPSGHALNSSYRMRNTIQYKQELGTAIVNFARIVPDGLLVFFPSYSMMDMCVE 552
Query: 551 TW---------NDSGILKEIMQHKLVFIETQDVVETTLALDNYR-KACDCGRGAVFFSVA 600
W +++ I + I +HK IE + A+++YR K D GA+FF+V
Sbjct: 553 FWKNRNHSNSASENTIWQRICKHKQPVIEPRQSSNFQSAIEDYRAKLHDSSSGAIFFAVC 612
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPF 625
RGKV+EG+DF GR VI+ G+PF
Sbjct: 613 RGKVSEGLDFADRAGRAVIVTGMPF 637
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 67/288 (23%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY-- 59
++++ V V FP+D Y Q +YM + +L + LLE PTGTGKT+ LL ++
Sbjct: 3 VYRIRGVDVDFPFD-AYDCQITYMDRVIESLQQGKNALLESPTGTGKTLCLLCASLAWRR 61
Query: 60 ---------------------------VLSKPENPVK---------LIYCTRTVHEMEKT 83
V + E+ +IY +RT ++ +
Sbjct: 62 TFGEFLRVGRGGGGGGTQQLPYGSQPSVSQQSEDSTSQQQQSRYPVIIYASRTHSQLRQV 121
Query: 84 LAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAA---CRKRTAS 140
+ ELK +Y+ + +A+ L SR+ +C+++ V R +A C+KR
Sbjct: 122 IKELKAT-SYRPK--------MAV-LGSREQMCIHNEVSKLRGRAQNNACHFLCKKRRCP 171
Query: 141 WVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQ 200
N EF +N + + + ++DL G+++G CPY+++R + +
Sbjct: 172 ---------HNNHVSEFMKNKPELGNEP------FDIEDLINIGRRKGPCPYYISRELSK 216
Query: 201 FANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
+++ Y YL+DP ++ +V++FDEAHN++++C +A S
Sbjct: 217 SVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLESICADAAS 264
>gi|148683833|gb|EDL15780.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_b [Mus
musculus]
Length = 1180
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 140/581 (24%), Positives = 231/581 (39%), Gaps = 63/581 (10%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR
Sbjct: 254 KIYFGTRTHKQIAQITRELR-----KTAYSGVPMTIL----SSRDHSCVHPEVVGNFNRK 304
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP-----PGVYTLQDLRAF 183
C + + + ++C F+ K ++ L + +++L +
Sbjct: 305 E---KCME---------LLDGKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSL 352
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G++ CPY+ AR +++ A++V Y YLLD ++ + ++ K VV+ DEAHNI++
Sbjct: 353 GRKLKACPYYTARELIEDADIVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCA 411
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGR---------LRAEYNRLVEGLA 293
E+ S SV L A L S IN I R K+ + R L LVE
Sbjct: 412 RESASYSVTEVQLRFARDELDSLINGNI-RKKSHEPLRDVCYNLINWLETNSKHLVE--- 467
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
RG W N L N+ R L ++L L+ E EK
Sbjct: 468 -RGYESSCKIWSGNEMLL----------NLYRMGITTATFPVLQRHLSAVLQKE--EKVT 514
Query: 354 PV---SFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY 410
P+ I + Q L+ + L L D + IQ + + +
Sbjct: 515 PIHGKEEAIQIPIISASTQVVLKGLFMVLDYLFRENSRFADDYKVAIQQTYSWTNQIAIF 574
Query: 411 TR-GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
+ G + + I L C + ++A + D+ +++V+TSGTLSP+ +
Sbjct: 575 DKTGVLAVPKNKKHSRQKIGVNALNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSS 634
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
L + ++ + + G + F G LL+ +
Sbjct: 635 ELGVTFSIQLEANHVISNSQVWVGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQ 694
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA--LDNYRKA 587
V GI+CF SY ++++ W +G+ + K V E Q +T L Y A
Sbjct: 695 TVSQGILCFLPSYKLLEKLRERWIFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYYDA 754
Query: 588 CDCG---RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 755 IKFKGEKDGALLIAVCRGKVSEGLDFSDDNARAVITVGIPF 795
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V ++FP YP Q + M + R L++ HCLLE PTG+GK++ALL ++ S
Sbjct: 14 YTIGGVKIHFPC-RAYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQS 72
Query: 63 KPENPV 68
E PV
Sbjct: 73 LSEKPV 78
>gi|30795235|ref|NP_840094.1| Fanconi anemia group J protein homolog [Mus musculus]
gi|78099253|sp|Q5SXJ3.1|FANCJ_MOUSE RecName: Full=Fanconi anemia group J protein homolog; Short=Protein
FACJ; AltName: Full=ATP-dependent RNA helicase BRIP1;
AltName: Full=BRCA1-associated C-terminal helicase 1;
AltName: Full=BRCA1-interacting protein C-terminal
helicase 1; Short=BRCA1-interacting protein 1
gi|62740250|gb|AAH94252.1| BRCA1 interacting protein C-terminal helicase 1 [Mus musculus]
Length = 1174
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 140/581 (24%), Positives = 231/581 (39%), Gaps = 63/581 (10%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR
Sbjct: 248 KIYFGTRTHKQIAQITRELR-----KTAYSGVPMTIL----SSRDHSCVHPEVVGNFNRK 298
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP-----PGVYTLQDLRAF 183
C + + + ++C F+ K ++ L + +++L +
Sbjct: 299 E---KCME---------LLDGKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSL 346
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G++ CPY+ AR +++ A++V Y YLLD ++ + ++ K VV+ DEAHNI++
Sbjct: 347 GRKLKACPYYTARELIEDADIVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCA 405
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGR---------LRAEYNRLVEGLA 293
E+ S SV L A L S IN I R K+ + R L LVE
Sbjct: 406 RESASYSVTEVQLRFARDELDSLINGNI-RKKSHEPLRDVCYNLINWLETNSKHLVE--- 461
Query: 294 LRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
RG W N L N+ R L ++L L+ E EK
Sbjct: 462 -RGYESSCKIWSGNEMLL----------NLYRMGITTATFPVLQRHLSAVLQKE--EKVT 508
Query: 354 PV---SFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY 410
P+ I + Q L+ + L L D + IQ + + +
Sbjct: 509 PIHGKEEAIQIPIISASTQVVLKGLFMVLDYLFRENSRFADDYKVAIQQTYSWTNQIAIF 568
Query: 411 TR-GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
+ G + + I L C + ++A + D+ +++V+TSGTLSP+ +
Sbjct: 569 DKTGVLAVPKNKKHSRQKIGVNALNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSS 628
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
L + ++ + + G + F G LL+ +
Sbjct: 629 ELGVTFSIQLEANHVISNSQVWVGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQ 688
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA--LDNYRKA 587
V GI+CF SY ++++ W +G+ + K V E Q +T L Y A
Sbjct: 689 TVSQGILCFLPSYKLLEKLRERWIFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYYDA 748
Query: 588 CDCG---RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 749 IKFKGEKDGALLIAVCRGKVSEGLDFSDDNARAVITVGIPF 789
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V ++FP YP Q + M + R L++ HCLLE PTG+GK++ALL ++ S
Sbjct: 8 YTIGGVKIHFPC-RAYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQS 66
Query: 63 KPENPV 68
E PV
Sbjct: 67 LSEKPV 72
>gi|297842879|ref|XP_002889321.1| hypothetical protein ARALYDRAFT_477275 [Arabidopsis lyrata subsp.
lyrata]
gi|297335162|gb|EFH65580.1| hypothetical protein ARALYDRAFT_477275 [Arabidopsis lyrata subsp.
lyrata]
Length = 868
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 12/187 (6%)
Query: 447 VFDRFQSVVITSGTLSPID-LYPRLLNFHPVVSRSF---KMSLTRDCICPMVLTRGSDQL 502
V D +V++ GTL PI+ RL + P F + + I P+ ++ G
Sbjct: 539 VVDEAHAVILAGGTLQPIEETRERLFPWLPSDQLQFFSCSHIVPSESIMPIAVSHG---- 594
Query: 503 PVSTKFDM----RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGIL 558
P FD RS + + G L+ +V++VP+G++ FF S+ Y ++ W++SGIL
Sbjct: 595 PSGQSFDFSHSSRSSTRMIQELGLLMSNLVAVVPEGVIVFFSSFEYETQVHTAWSNSGIL 654
Query: 559 KEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLV 618
+ IM+ K VF E + E L +Y++A + RGA+ +V GKV+EGI+F R V
Sbjct: 655 RRIMKKKRVFREPRRNTEVEAVLRDYKEAIESERGAIMLAVVGGKVSEGINFSDSMCRCV 714
Query: 619 IMFGVPF 625
+M G+P+
Sbjct: 715 VMVGLPY 721
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 22/202 (10%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ +C+RT ++ + + EL R A+ + + L SRKNLC+N VL N
Sbjct: 171 KVFFCSRTHSQLSQFVKEL--------RKTVFASILNVVSLGSRKNLCINEDVLKLANVT 222
Query: 129 SVDAACRKRTASWVRALAAE---NPNIET--------CEFFENY--EKAASAAVLPPGVY 175
++ +C ++ + N+ C + ++ A
Sbjct: 223 RINESCLDLQKKKKSQVSKKKNLGANVRIGRTKASCGCPLLRKHKLQREFKAESFQQEAM 282
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
++DL G+Q CPY+ +R M A++V+ YQ LL + + K SVV+ DE
Sbjct: 283 DIEDLVQLGRQMRTCPYYGSRRMAPAADLVILPYQSLLSKSSRESLGLSL-KNSVVIIDE 341
Query: 236 AHNIDNVCIEALSVSVRRQTLE 257
AHN+ ++ + + LE
Sbjct: 342 AHNLADILLSMHDAKITLSQLE 363
>gi|332839865|ref|XP_520821.3| PREDICTED: probable ATP-dependent RNA helicase DDX11 isoform 4 [Pan
troglodytes]
Length = 880
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 583 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 642
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 643 NQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 702
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 703 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 762
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 763 LGRCVVMVGMPF 774
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 19/220 (8%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 201 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 252
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 253 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDIE 312
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 313 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 371
Query: 239 IDNVCIEALSVSVR-RQTLEGATRNLSRINQEIERFKATD 277
+ + SV V Q + ++ L + Q +R KA +
Sbjct: 372 LIDTITGMHSVEVSGSQLCQAHSQLLQYMEQYGKRLKAKN 411
>gi|302829651|ref|XP_002946392.1| hypothetical protein VOLCADRAFT_30322 [Volvox carteri f.
nagariensis]
gi|300268138|gb|EFJ52319.1| hypothetical protein VOLCADRAFT_30322 [Volvox carteri f.
nagariensis]
Length = 700
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 102/208 (49%), Gaps = 10/208 (4%)
Query: 428 IPDPVLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT 486
+P P L C +A + + R +S ++TSGTLSP+D + L V +
Sbjct: 383 LPAPTLSYWCFIPGMAFRRLAALRLRSFLLTSGTLSPMDSFAGELQIPFQVRLENPHVIE 442
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
+ VL G P+++ + R G LV + +VPDG++ FF SY+ MD
Sbjct: 443 PSQVWVGVLPTGPSGAPLNSTYASRDSATYKDELGNALVNVARLVPDGLLVFFASYAAMD 502
Query: 547 EIIATWNDSG-------ILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFF 597
I W +G + I++HK +E ++ A++ +R D +GAVFF
Sbjct: 503 SAINHWKQNGGAGGVGSTWERIVRHKAPVVEPRESSAFGAAIEEFRSKLDDPATQGAVFF 562
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+V RGKV+EG+DF GR V++ G+P+
Sbjct: 563 AVCRGKVSEGLDFSDRAGRAVVITGIPY 590
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 131/274 (47%), Gaps = 41/274 (14%)
Query: 4 KLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS- 62
++ + V FP++ Y Q +YM + +AL + LLE PTGTGKT+ LL ++ S
Sbjct: 1 QIAGIPVEFPFEP-YACQRNYMESVIKALQEGRNALLESPTGTGKTLCLLCSTLAWRESL 59
Query: 63 -------------KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGL 109
KPE P+ +IY +RT ++ + + EL+ +Y+ R + + L
Sbjct: 60 KVGRTSWMSGGAGKPELPI-IIYSSRTHSQLAQVMKELRN-SSYKDR-------VRSTVL 110
Query: 110 SSRKNLCVN---SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAAS 166
SSR+ C++ +++ + A R SW L F Y AA+
Sbjct: 111 SSRQQTCLHPTANKLSGGAANQACKALTSARKCSWHNQLK-----------FGKYRNAAA 159
Query: 167 AAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ 226
+ V V +++L GK G CP+FL R + A++V Y YLLDP ++ +
Sbjct: 160 SLV--SSVPDIEELVTVGKTHGVCPFFLGRDAGKEADIVFLPYNYLLDPATRRTMADSIN 217
Query: 227 -KESVVVFDEAHNIDNVCIEALSVSVRRQTLEGA 259
+VV+FDEAHN+++V +A S + + L A
Sbjct: 218 WNNAVVIFDEAHNVESVSSDACSFDITAKQLTDA 251
>gi|332839861|ref|XP_003313865.1| PREDICTED: probable ATP-dependent RNA helicase DDX11 isoform 1 [Pan
troglodytes]
gi|410258634|gb|JAA17284.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglodytes]
gi|410301530|gb|JAA29365.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglodytes]
Length = 906
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 728
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 19/220 (8%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDIE 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 397
Query: 239 IDNVCIEALSVSVR-RQTLEGATRNLSRINQEIERFKATD 277
+ + SV V Q + ++ L + Q +R KA +
Sbjct: 398 LIDTITGMHSVEVSGSQLCQAHSQLLQYMEQYGKRLKAKN 437
>gi|380420358|ref|NP_001244074.1| probable ATP-dependent RNA helicase DDX11 isoform 4 [Homo sapiens]
gi|29476793|gb|AAH50069.1| DDX11 protein [Homo sapiens]
Length = 880
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 583 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 642
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 643 NQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 702
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 703 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 762
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 763 LGRCVVMVGMPF 774
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 201 TKIYYCSRTHSQLAQ------FVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 252
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 253 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDME 312
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 313 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 371
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 372 LIDTITGMHSVEVSGSQLCQAH---SQLLQYVERY----GKRLKAK 410
>gi|410348520|gb|JAA40864.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglodytes]
gi|410348522|gb|JAA40865.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglodytes]
gi|410348524|gb|JAA40866.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglodytes]
Length = 906
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAEHVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 728
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 19/220 (8%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDIE 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 397
Query: 239 IDNVCIEALSVSVR-RQTLEGATRNLSRINQEIERFKATD 277
+ + SV V Q + ++ L + Q +R KA +
Sbjct: 398 LIDTITGMHSVEVSGSQLCQAHSQLLQYMEQYGKRLKAKN 437
>gi|320581727|gb|EFW95946.1| ATP-dependent RNA helicase Chl1, putative [Ogataea parapolymorpha
DL-1]
Length = 802
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFH-PVVSRSFKMSLTRDCICPMVLTR 497
D S A + V + + V++ GT+ PI + +NF P V + D I P
Sbjct: 508 DPSEAFRDVVEECKCVILAGGTMEPISDF---INFLVPYVESKQIKHFSCDHIIP---AS 561
Query: 498 GSDQLPVSTK--------FDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
D PV ++ FD R+D + G+ ++EMV++VPDG+V FF SY Y+D+++
Sbjct: 562 NLDVYPVKSRQGVEFEFSFDKRNDKKMIDALGETILEMVAVVPDGMVVFFPSYKYLDQLV 621
Query: 550 ATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609
W SG I Q K ++ E+++ + L NY + RGAV F+V GK++EGI+
Sbjct: 622 ELWKKSGHYHRINQVKTIYTESRENAVDNV-LQNYSQCILERRGAVLFAVVGGKMSEGIN 680
Query: 610 FDRHYGRLVIMFGVPFQYTLS 630
F R V M G+PF +S
Sbjct: 681 FSDELARAVAMVGLPFPNLMS 701
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 16/176 (9%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQT-RHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ + +RT ++ + +L+L H + + K LA+G SRK LC+N +V + ++
Sbjct: 187 KIFFSSRTHSQLSQFGQQLRLTHFPSSLESVEEKTKYLALG--SRKQLCINEKVSSLKDV 244
Query: 128 DSVDAAC----RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAF 183
++ AC RK+ + P ET + + + + +++L
Sbjct: 245 QQINEACLELQRKKDGE---KGCSYMPRPETEDLTTQFRDLTFSEI-----RDIEELHEI 296
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
G CPY+ R ++ A +V YQ LL ++ ++ K S+VV DEAHN+
Sbjct: 297 GSHYRVCPYYSLRRGMEIAEIVSMPYQLLLQKSTRQVLGLDL-KNSIVVIDEAHNL 351
>gi|1666893|gb|AAB18749.1| CHL1 potential helicase [Homo sapiens]
Length = 906
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 728
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDME 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 397
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 398 LIDTITGMHSVEVSGSQLCQAH---SQLLQYVERY----GKRLKAK 436
>gi|348564904|ref|XP_003468244.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Cavia porcellus]
Length = 908
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLLNF-----HPVVSRSFKMSLTRDCICPMVLTRGSD 500
V +++VI GT+ P+ D +LL + VV S + D I P+VL G
Sbjct: 611 VVKECRAMVIAGGTMQPVSDFREQLLAWAGTQSERVVEFSCGHVIPPDNILPLVLCSGPT 670
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ F R P + G++L + ++VP G+VCFF SY Y +++A W+ SG+L
Sbjct: 671 GQQLEFTFQQRELPAMMEETGRILCNLCNVVPGGLVCFFPSYEYQRQVLAHWDKSGLLAR 730
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y K CG+ GA+ SV GK++EGI+F
Sbjct: 731 LTVRKKLFQEPKRASQVEQVLSAYSKCIKRCGQAGGPVTGALLLSVVGGKMSEGINFSDD 790
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 791 LGRCVVMVGMPY 802
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 98/235 (41%), Gaps = 43/235 (18%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNS--RVLAA- 124
K+ YC+RT ++ + + E+ Q G +++ +G SR+NLCVN R L A
Sbjct: 227 TKIYYCSRTHSQLAQFVQEV------QKSPFGKDTRLVTLG--SRQNLCVNEDVRSLGAV 278
Query: 125 ---------------ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAV 169
EN++ +A KR R C F+ +
Sbjct: 279 QLINDRCMEMQRSPHENKNRAEAEKPKRRRQEGRT---------ACPFYNREQTQLLRDE 329
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
+ ++ L A G++ CPY+ +R V A +VV Y LL +Q +
Sbjct: 330 ILVAARDMEQLVALGREARACPYYGSRLAVPVAQLVVLPYPMLLHAATRQAAGIRLQGQ- 388
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
VV+ DEAHN+ + + S V L A S++ Q +ER++ RL+A+
Sbjct: 389 VVIIDEAHNLIDTITDIHSTEVSGSQLCQAH---SQLLQYMERYRK----RLKAK 436
>gi|1517816|gb|AAB06962.1| helicase [Homo sapiens]
Length = 906
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 728
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDME 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 397
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 398 LIDTITGMHSVEVSGSQLCQAH---SQLLQYVERY----GKRLKAK 436
>gi|260946235|ref|XP_002617415.1| hypothetical protein CLUG_02859 [Clavispora lusitaniae ATCC 42720]
gi|238849269|gb|EEQ38733.1| hypothetical protein CLUG_02859 [Clavispora lusitaniae ATCC 42720]
Length = 825
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 8/200 (4%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
LQ D S+ + V + + V++ GT+ P+D + L P + + + T D +
Sbjct: 515 TLQYILLDPSIIFEDVLSQAKCVLLCGGTMEPMDDFKSYL--FPNIPSNLVKTFTCDHLI 572
Query: 492 P-----MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
P + + ++ L F RS P + R G L+ + +P G+V FF SY Y+
Sbjct: 573 PKENLKVFAVKATNNLDFEFSFQKRSQPSMMRELGLLIARLCQSIPSGVVIFFPSYKYLS 632
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCG-RGAVFFSVARGKVA 605
+ + W+ SGIL+ I K VF E +D E L Y A +GA F+V GK+A
Sbjct: 633 HVFSLWSSSGILERISSSKTVFQEPKDSQEVESTLQEYSNAVKSSFKGAALFAVVGGKMA 692
Query: 606 EGIDFDRHYGRLVIMFGVPF 625
EGI+F R VI+ G+P+
Sbjct: 693 EGINFADDLARGVIVVGLPY 712
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 22/184 (11%)
Query: 64 PENPVKLIYCTRTVHEMEKTLAELKLLHNYQT-RHLGPAAKILAIGLSSRKNLCVNSRVL 122
PE P +++ +RT ++ + +L+L + + + K +A+G SRK LC+N +V
Sbjct: 195 PECPHTILFSSRTHSQLYQFAHQLQLPSFHSSLEEITEYTKFVALG--SRKQLCINDKVR 252
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-------GVY 175
+ N +S++ AC V + P C+FF K+ + V
Sbjct: 253 SLGNLNSINDAC-------VDLQKKDQP----CDFFPKITKSGVSEKTKSFIDNCFVKVN 301
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
++D+ + GK+ CPY+ R+ +A ++ YQ LL + +++ S+VV DE
Sbjct: 302 DIEDVASLGKKLEICPYYTVRNATDYAEIIALPYQLLLSKSARESLDLKIE-NSIVVIDE 360
Query: 236 AHNI 239
AHN+
Sbjct: 361 AHNL 364
>gi|1666897|gb|AAB18751.1| CHL1 protein, partial [Homo sapiens]
Length = 556
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 334 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 393
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 394 NQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 453
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 454 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 513
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 514 LGRCVVMVGMPF 525
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
V ++ L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+
Sbjct: 59 VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVII 117
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
DEAHN+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 118 DEAHNLIDTITGMHSVEVSGSQLCQAH---SQLLQYVERY----GKRLKAK 161
>gi|332232623|ref|XP_003265503.1| PREDICTED: probable ATP-dependent RNA helicase DDX11 isoform 4
[Nomascus leucogenys]
Length = 880
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 583 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 642
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 643 NQPLEFTFQKRELPQMMDEAGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLDR 702
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y + CG+ GA+ SV GK++EGI+F +
Sbjct: 703 LAARKKIFQEPKSAHQVEQVLLAYSRCIQGCGQERGRVTGALLLSVVGGKMSEGINFSDN 762
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 763 LGRCVVMVGMPF 774
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 201 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 252
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 253 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALADVKDIE 312
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 313 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 371
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 372 LIDTITGMHSVEVSGSQLCQAH---SQLLQYMERY----GKRLKAK 410
>gi|29792240|gb|AAH50522.1| DDX11 protein [Homo sapiens]
Length = 970
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 728
Query: 561 IMQHKLVFIETQ---DVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDME 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 397
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L + S++ Q +ER+ RL+A+
Sbjct: 398 LIDTITGMHSVEVSGSQL---CQAHSQLLQYVERY----GKRLKAK 436
>gi|60811280|gb|AAX36168.1| DEAD/H box polypeptide 11 [synthetic construct]
Length = 971
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 728
Query: 561 IMQHKLVFIETQ---DVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDME 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 397
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L + S++ Q +ER+ RL+A+
Sbjct: 398 LIDTITGMHSVEVSGSQL---CQAHSQLLQYVERY----GKRLKAK 436
>gi|410348526|gb|JAA40867.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglodytes]
Length = 972
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAEHVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 728
Query: 561 IMQHKLVFIETQ---DVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 19/220 (8%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDIE 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 397
Query: 239 IDNVCIEALSVSVR-RQTLEGATRNLSRINQEIERFKATD 277
+ + SV V Q + ++ L + Q +R KA +
Sbjct: 398 LIDTITGMHSVEVSGSQLCQAHSQLLQYMEQYGKRLKAKN 437
>gi|332232617|ref|XP_003265500.1| PREDICTED: probable ATP-dependent RNA helicase DDX11 isoform 1
[Nomascus leucogenys]
Length = 906
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEAGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLDR 728
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y + CG+ GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQGCGQERGRVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALADVKDIE 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 397
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 398 LIDTITGMHSVEVSGSQLCQAH---SQLLQYMERY----GKRLKAK 436
>gi|132566527|ref|NP_689651.1| probable ATP-dependent RNA helicase DDX11 isoform 3 [Homo sapiens]
gi|380420356|ref|NP_001244073.1| probable ATP-dependent RNA helicase DDX11 isoform 3 [Homo sapiens]
gi|74731686|sp|Q96FC9.1|DDX11_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX11; AltName:
Full=CHL1-related protein 1; Short=hCHLR1; AltName:
Full=DEAD/H box protein 11; AltName: Full=Keratinocyte
growth factor-regulated gene 2 protein; Short=KRG-2
Length = 970
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 728
Query: 561 IMQHKLVFIETQ---DVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDME 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 397
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L + S++ Q +ER+ RL+A+
Sbjct: 398 LIDTITGMHSVEVSGSQL---CQAHSQLLQYVERY----GKRLKAK 436
>gi|332839867|ref|XP_003313867.1| PREDICTED: probable ATP-dependent RNA helicase DDX11 isoform 3 [Pan
troglodytes]
Length = 972
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGR 728
Query: 561 IMQHKLVFIETQ---DVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 19/220 (8%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDIE 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 397
Query: 239 IDNVCIEALSVSVR-RQTLEGATRNLSRINQEIERFKATD 277
+ + SV V Q + ++ L + Q +R KA +
Sbjct: 398 LIDTITGMHSVEVSGSQLCQAHSQLLQYMEQYGKRLKAKN 437
>gi|441670170|ref|XP_004092177.1| PREDICTED: probable ATP-dependent RNA helicase DDX11 [Nomascus
leucogenys]
Length = 970
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEAGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLDR 728
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y + CG+ GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQGCGQERGRVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALADVKDIE 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 397
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 398 LIDTITGMHSVEVSGSQLCQAH---SQLLQYMERY----GKRLKAK 436
>gi|390602956|gb|EIN12348.1| DNA repair helicase [Punctularia strigosozonata HHB-11173 SS5]
Length = 868
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 135/561 (24%), Positives = 229/561 (40%), Gaps = 99/561 (17%)
Query: 104 ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFF----E 159
+ ++ L SRK LC+ L ++ D +D ACR L +E + + C + +
Sbjct: 259 VRSLSLGSRKQLCIYDE-LRSKTTD-IDEACR--------TLLSEKGD-KRCPYLPAIDD 307
Query: 160 NYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAG 219
N ++ ++DL G++ CPYF +R + + +V+ Y LL
Sbjct: 308 NTRIPKLRDIILSSPMDIEDLANAGRRHETCPYFGSRSAIPQSQLVLLPYNLLLHRSARE 367
Query: 220 IISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAG 279
+ ++ K+ VVV DEAHN+ + SV V T+ +LS++ + RF++ A
Sbjct: 368 ALGIDL-KDQVVVIDEAHNLIPTLLSLSSVQVAEHTIR---LSLSQLAAYVSRFRSRLAS 423
Query: 280 R-----------LRAEYNRLVEGLALRGNLPIADAWLSNPALPS-----DILKEAVPG-N 322
+ L+A Y + E P LS P + + L V G N
Sbjct: 424 KHLVCLKRLVSFLKAMYGVVNEFATTGAKEP--QGPLSKPEVMTVHEFVSRLGRKVDGIN 481
Query: 323 IRRAEHFLH---VLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERL 379
+ E +L + R++ Y VEK+GP A + +
Sbjct: 482 LLEVEEYLRRSKIARKISSY-----SDAVVEKQGPKRSNAGAPTPLHV-----------V 525
Query: 380 HSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHD 439
SL++ L + D + + + + G ++ + + P S H
Sbjct: 526 ESLIVALTSPNEDGRVSLSRV---------HEAGHDTVVVRYQQLNP---------STH- 566
Query: 440 ASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP------M 493
K V D ++V++ GT+SP+ Y + P + M T I P +
Sbjct: 567 ----FKEVVDTARTVILAGGTMSPMSDY--VTQLFPQIKSDNLMLRTYGHIVPASNIQTV 620
Query: 494 VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN 553
V+++G KF R DP G+ L +++I P G+V FF SY+++D A+W
Sbjct: 621 VVSKGPRGNDFEFKFASRRDPLAIAELGQALSNLINITPGGMVIFFPSYAFLDSAKASWR 680
Query: 554 DSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR---------GAVFFSVARGKV 604
+SG+L + K V E Q E L +Y A D R GA+ +V K+
Sbjct: 681 ESGLLAKWTTKKKVHYEPQSASEVETVLRDY--ASDISRIDPSTSKKQGAILLAVVGAKL 738
Query: 605 AEGIDFDRHYGRLVIMFGVPF 625
+EG++F R V++ G+PF
Sbjct: 739 SEGLNFADDLARCVVIVGLPF 759
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL 61
FPY YP Q M L L+ + H ++E T TGKT+ LL S++L
Sbjct: 14 FPYQPPYPNQQELMKHLYSVLEHRRHTIVESRTSTGKTLVLLCATLSWLL 63
>gi|380495771|emb|CCF32142.1| DNA repair helicase [Colletotrichum higginsianum]
Length = 896
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 146/614 (23%), Positives = 246/614 (40%), Gaps = 105/614 (17%)
Query: 68 VKLIYCTRTVHEMEKTLAELK-----------LLHNYQTRHLGPAAKILAIGLSSRKNLC 116
+K+ Y +RT ++ + + EL+ ++ + + + LSSR+ LC
Sbjct: 205 IKIYYTSRTHSQLTQFIHELRRPEFPSSIPSSIVQGQREDDRRSKEPVKHLPLSSRQKLC 264
Query: 117 VNSRVLAAENRDSVDAAC---RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG 173
+N V + +++ C +K A + NI F + + A LP
Sbjct: 265 INPSVARLGSLSAINDRCSELQKPKAKDKCPYTLKEDNITQTHQFRD----TAHATLP-- 318
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++DL GK+ CPY+ +R + A +V Y LL + +++ ++V+
Sbjct: 319 --DIEDLYHLGKKLSVCPYYASRAAIAGAEIVTLPYPLLLQKNARDALGIKLEG-NIVIV 375
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---AEYNRLVE 290
DEAHNI + + V+ L A + L ++RF G R + R++E
Sbjct: 376 DEAHNIMDAVANVYASEVKLSELRRARQMLGVY---VKRFGKKLKGENRVMVGQVGRVIE 432
Query: 291 GLALRGNLPIADAWL---SNPALPSDILKEAVPGNIRRAEHFLHV-LRRLVQYLRGRLET 346
GL+ W+ S P I+ V + R + + L RL+QY++
Sbjct: 433 GLS---------EWMDAQSKLKSPQGIVDSKV---LLRCKGVDQINLFRLIQYIQESKLA 480
Query: 347 ENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATL 406
+E S+VA + A + H T LHI + F
Sbjct: 481 YKIE-----SYVAHVEEEAA----------DASHGKGPPRSST---PVLHI--LSSFLIS 520
Query: 407 VGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDL 466
+ + I E P I L LS + A + ++V++ GT+SP D
Sbjct: 521 LTNLSSEGRIFYEKLATSPPDIQLSYLLLS---PTHAFSSIATSARAVILAGGTMSPFDD 577
Query: 467 YPRLLNFHPVVSRSFKMSLTRDCICP----MVLTRGSDQL-----PVST---KFDMRSDP 514
Y L P + S +L+ + P V T Q P ST F R D
Sbjct: 578 YKSHL--FPYLPESKLTTLSCGHVIPPSNLCVWTLAGSQPGLKRDPNSTFEFSFQRRGDM 635
Query: 515 GVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND------------SGILKEIM 562
+ + G + + ++VPDG+V FF SY Y++E++ W + + +
Sbjct: 636 DMKGSLGLAIFNLCNVVPDGVVVFFPSYGYLEEVVTAWKGVATRQGQTPQGATSLWDRLQ 695
Query: 563 QHKLVFIETQ-----DVVE--TTLALDNYRK----ACDCGRGAVFFSVARGKVAEGIDFD 611
Q K V ET+ +V+E + L + R+ A RGA+ SV GK++EGI+F
Sbjct: 696 QRKEVLSETRGGSSDEVLESYSRAILGDGREPKPGAAGKPRGALLLSVVGGKMSEGINFS 755
Query: 612 RHYGRLVIMFGVPF 625
GR VI+ G+P+
Sbjct: 756 DRLGRCVIIVGLPY 769
>gi|357129541|ref|XP_003566420.1| PREDICTED: probable ATP-dependent RNA helicase DDX11-like
[Brachypodium distachyon]
Length = 932
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 15/193 (7%)
Query: 447 VFDRFQSVVITSGTLSPID-----LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQ 501
V + +VV+ GTL PI+ L+P L + V S + + I P+ +TRG
Sbjct: 603 VTEDAHAVVMAGGTLQPIEETRLRLFPSL-STSDVKFFSCNHIVPAESILPIAVTRGPSG 661
Query: 502 LPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEI 561
+ F R P + G+ L +V+IVPDG+V FF SY Y ++ W SG + +I
Sbjct: 662 MEFDFSFGSRRSPAMIEELGRFLCNIVTIVPDGVVMFFTSYEYEKQVYDAWTASGTISKI 721
Query: 562 MQHKLVFIETQDVVETTLALDNYRKACD-CGR--------GAVFFSVARGKVAEGIDFDR 612
+ K VF E ++ V L+ Y++A C GA+ +V GK++EGI+F
Sbjct: 722 SKKKCVFREPKNSVNVEGILNKYKEAIQSCSEHSQGTGVNGALLLAVVGGKISEGINFSD 781
Query: 613 HYGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 782 GMGRCVLMVGLPY 794
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 23/217 (10%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + +RT ++ + + ELK +T+ +AK+ + L SR NLC+N+ V + +
Sbjct: 248 KVYFTSRTHSQLSQFVGELK-----KTQF---SAKLRMVCLGSRMNLCINNDVRKLGSAN 299
Query: 129 SVDAAC---RKRTASWVRALAAENPNIETCEFF--------ENYEKAASAAVLPPGVYTL 177
++ C +K S + +N + + +K + V G +
Sbjct: 300 RINERCLELQKNKKSSKIKVDGDNQKARQAKISCQCPMLRKRSLQKEFRSEVSANGALDI 359
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+DL GK+ G CPY+ R MV A++VV YQ LL + + K SV++ DEAH
Sbjct: 360 EDLAQIGKKIGTCPYYGVRDMVPAADLVVLPYQSLLLKSARESLGLNL-KNSVIIIDEAH 418
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
N+ + + V L A LS + ++RF+
Sbjct: 419 NLADSLTSMYNSKVTCPQLRAA---LSHLEAYLDRFQ 452
>gi|223478945|ref|YP_002583205.1| DNA repair helicase Rad3 [Thermococcus sp. AM4]
gi|214034171|gb|EEB74997.1| DNA repair helicase Rad3 [Thermococcus sp. AM4]
Length = 640
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 150/633 (23%), Positives = 262/633 (41%), Gaps = 114/633 (18%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
Y PY P Q ++ ++ A++ + ++E PTG GKT+++L+ + E +K+
Sbjct: 6 YLPY-RPRPHQLEFIELVRDAVERGENAIIEAPTGFGKTVSVLAGVLPVA---KELGLKV 61
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
+Y RT +M++ + ELK ++ AK+ + + SRK LC++S L D+
Sbjct: 62 LYLARTHRQMDRVIEELKAING--------KAKVSGVEMRSRKELCLHS-YLREYTTDAY 112
Query: 131 DA--ACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ------DLRA 182
A C+ S C F+EN EK A + + L+ ++
Sbjct: 113 TAMVVCKNLRKSG------------KCPFYEN-EKKKKAELDELVNFFLETPASPVEVLN 159
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEAHNI 239
+ + CPY + R + A+V+V SY Y L+P + + + +V+FDEAHN+
Sbjct: 160 YSETLEICPYDVTRLVAYKADVIVASYLYALNPTIRENFLTYLDLDYSDLIVIFDEAHNL 219
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQ-EIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+ I ALS + T+ A + + EI F + L Y+ + GN
Sbjct: 220 PDQAISALSDRMSIHTVNRAIKEADEYREHEIANFLSIFGKGLEILYSEKL------GNR 273
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVL----RRLVQYLRGRLETENVEKEGP 354
+ + P P I H ++VL R LV+ L + + +E
Sbjct: 274 DVEE----TPIAPELIFG-----------HLMNVLGLDTRWLVKTLNEMVAVGDAIREDR 318
Query: 355 VSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGF 414
++ ++ G + F L+L L + D++L + + +G
Sbjct: 319 INKNKPPRSYIG---RVGEF-------LLLWLSLIGRDDYLFLL----------SREKGL 358
Query: 415 SIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFH 474
S L+L D S A+ + D QS + SGTL+P++ + ++
Sbjct: 359 S-----------------LELVALDPSRALSFIRD-VQSAIFMSGTLTPLEAFRDVMGIE 400
Query: 475 PVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDG 534
+ F + R+ +V VST+ + RS + R G +VE V ++P
Sbjct: 401 KARLKKFPRMVKRENAQVLVAK------DVSTRGEERSME-LYRKMGDYIVEAVRLIPKN 453
Query: 535 IVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV--ETTLALDNYRKACDCGR 592
+ F SY + +++ N L+E K VFIE Q E L + ++ G
Sbjct: 454 VGVFTASYEVLQGLLSA-NLQVRLEET--GKAVFIEKQGASSRENDLLVAQFKAHARSG- 509
Query: 593 GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GAV V G+ +EG D+ VI+ G+P+
Sbjct: 510 GAVLLGVMGGRNSEGQDYSGDEMNGVILVGIPY 542
>gi|196008361|ref|XP_002114046.1| hypothetical protein TRIADDRAFT_27892 [Trichoplax adhaerens]
gi|190583065|gb|EDV23136.1| hypothetical protein TRIADDRAFT_27892 [Trichoplax adhaerens]
Length = 702
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 134/308 (43%), Gaps = 51/308 (16%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLI----TSYVL-- 61
+ V FP+ N YP Q YM + + L + +LE PTGTGKT+ LL +YV
Sbjct: 9 IEVDFPF-NPYPCQLDYMTNVIQCLQEGKNGILESPTGTGKTLCLLCACLAWRQTYVAQV 67
Query: 62 ---------------SKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILA 106
+ N K+IY +RT ++ + + ELK H KI
Sbjct: 68 QLNQRIQMQQLQQNPNTDRNMPKIIYSSRTHSQLSQVVNELK--------HTIYRPKICI 119
Query: 107 IGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAAS 166
+G SR+ +C++ V ++ + ACR + N TC F N E
Sbjct: 120 LG--SREQMCIHPEVAKLQSNTAKIHACRAKV------------NARTCHFCNNVETKKD 165
Query: 167 AAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ 226
+ +++L G +Q CPY++AR + A++V Y YL+D K S +M
Sbjct: 166 DPSFSENILDIEELVELGGKQKVCPYYMARELRSNADIVFMPYNYLIDFKSRQSNSIDM- 224
Query: 227 KESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKAT------DAGR 280
K ++++ DEAHN++ +C ++ S + + + ++R K+T DA
Sbjct: 225 KNAIIICDEAHNLEKICEDSASFDLSSADIANCIDEVDNFINILQRIKSTTDSEEYDATG 284
Query: 281 LRAEYNRL 288
+R N L
Sbjct: 285 MRCNVNNL 292
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 5/198 (2%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
+L C S ++K + D+ ++V++TSGTLSPI+ V + + I
Sbjct: 394 ILSYWCFSPSYSMKELIDQEVRAVILTSGTLSPIESLVAEFQVSFPVQLQNPHVIDKKQI 453
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
+++G +++ + RS + G +V I+PDG++ FF SY M+ I
Sbjct: 454 WIGTVSKGPCGTALNSSYRNRSSAEYLSSLGNTIVNFARIIPDGLLVFFPSYPVMNSCIE 513
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKAC---DCGRGAVFFSVARGKVAEG 607
W SGI I QHK + IE Q E +D Y + +C GA+F V RGKV+EG
Sbjct: 514 HWQSSGIWDRICQHKSLHIEPQHKSEFNRVMDEYYSSVRDENCS-GAIFLGVCRGKVSEG 572
Query: 608 IDFDRHYGRLVIMFGVPF 625
+DF GR VI+ G+PF
Sbjct: 573 VDFADINGRAVIITGLPF 590
>gi|77682788|gb|ABB00674.1| EG:33C11.2 [Drosophila simulans]
Length = 580
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 148/579 (25%), Positives = 239/579 (41%), Gaps = 81/579 (13%)
Query: 104 ILAIGLSSRKNLCVNSRV-----LAAENRDSVDAACRKR--TASWVRALAAENPNIETCE 156
+ I L SR+ LC N V + N +D A +K S L AE + C
Sbjct: 6 VRCISLGSRQQLCGNPAVRKLKHVGLMNERCLDMATKKARPNPSKKSRLTAETNS--RCP 63
Query: 157 FFENYEKAASA-------AVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
F KAAS A+ P +++L G G C Y+ +R V+ A +V+ Y
Sbjct: 64 F-----KAASLVESLRDLALTEP--LDIEELANEGTACGGCSYYASRSAVEHAQLVLLPY 116
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQE 269
Q LL + + K S+V+ DEAHN+ + + + RQ LE A +S
Sbjct: 117 QLLLQKSARNQLGISL-KGSIVIVDEAHNLLDSVAQLHGSEINRQQLERAKVQISGYK-- 173
Query: 270 IERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILK------EAVPGNI 323
E F+ A + + N+++ +R L I D + + + S +++ E NI
Sbjct: 174 -EHFQKRFATKNLLKINQII--FIVRRLLKILDQRMESQSNGSSMMRTYELTAEGDFFNI 230
Query: 324 RRAEHFLHVLR----RLVQYLRGRLETEN--VEKEGPVSFVASITAHAGIDQKTLRFCYE 377
+ R R VQ R+E E E + PVS S+ ++ L+ E
Sbjct: 231 DLCDLLDFCARTRFARKVQGHADRMEREPRPSENQPPVSTARSLILQRLASEQKLK---E 287
Query: 378 RLHSLMLTLE-ITDTDEFLHIQT-------------------ICDFATLVGTYTRGFSII 417
+ S+ +E I D+ +Q + F + + I+
Sbjct: 288 KPKSVKRKVEDINKEDKAGELQEQQKPPKKPVQEVAPSPIRPLLAFLETLTSNAEDGRIL 347
Query: 418 IEPFDERMPHIP-DPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLNF-- 473
++P + +I DP Q + + +++VI GT+ P +L +L
Sbjct: 348 LDPVGGTLKYILLDPAEQFA---------DIVAEARAIVIAGGTMQPTQELKEQLFTGCQ 398
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
+V R + + D + P V++ G P+S KF R+ + R +L + +VP
Sbjct: 399 DRLVERFYNHVVADDAVLPFVISNGPSGAPLSFKFAHRASAEMLRELSMVLRNLCQVVPG 458
Query: 534 GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CG 591
G+VCF SY Y+D + SG L+ I K VF E E LDNY A
Sbjct: 459 GVVCFLPSYEYLDTVYKYLEQSGTLETIRCRKSVFREVSGSAEQL--LDNYALAIKRPAS 516
Query: 592 RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
GA+ SV GK++EG++F GR V++ G+P+ + S
Sbjct: 517 GGALLLSVVGGKLSEGLNFADDLGRAVLVVGLPYSNSQS 555
>gi|375082618|ref|ZP_09729671.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus litoralis
DSM 5473]
gi|374742696|gb|EHR79081.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus litoralis
DSM 5473]
Length = 643
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 137/632 (21%), Positives = 252/632 (39%), Gaps = 111/632 (17%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
YFPY+++ P Q ++ + A+ + ++E PTG GKT+++L+ Y + K+
Sbjct: 4 YFPYNSLRPNQEEFIKLVDNAVRNGENLVIEAPTGFGKTVSVLAGALPYA---KDMGYKI 60
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
IY RT +M++ + ELK + + + SRK LC++ + +
Sbjct: 61 IYLARTHKQMDRVIEELKAISK--------KTHVSGVEFRSRKELCLHQYI----QNFAP 108
Query: 131 DAACRKRTASWVRALAAENPNIETCEFFENYEKAA-----------SAAVLPPGVYTLQD 179
DA ++ L CEFFEN +K P V T
Sbjct: 109 DAYNAMIVCKNLKKLG-------KCEFFENLKKKKEEFDELVQYFIQTPAEPITVLT--- 158
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEA 236
+ K +CPY L R + ++V+V SY Y+++P + + +V+FDEA
Sbjct: 159 ---YSKMFDFCPYELTRKVALNSDVIVASYLYMINPAIRENFMSYFDFDYSDLIVIFDEA 215
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRG 296
HN+ + I ALS V + +++R +E + +K + + + + +E L
Sbjct: 216 HNLPDQAINALSDKV-------SIHSINRAIKEADEYKEHETANFLSIFLKGLENLYQE- 267
Query: 297 NLPIADAWLSN-PALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPV 355
+ D + P LP I + +L ++V+ E + P
Sbjct: 268 --KLKDMKVEEVPILPESIFYHVFDVLGINERQLIRILDQMVKAGDAIREDKIERNLPPR 325
Query: 356 SFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFS 415
S+V + L+L + +++L + + +GFS
Sbjct: 326 SYVGRVGEF-----------------LLLWFALIGKEDYLFLM----------SRDKGFS 358
Query: 416 IIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHP 475
L+L D S A+ + QS + SGTL+P++ + ++
Sbjct: 359 -----------------LELVALDPSKALSFI-KNVQSAIFMSGTLTPLEAFADIMGVEG 400
Query: 476 VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGI 535
+ + F + R+ +V VST+ D RS + + + +VE +P +
Sbjct: 401 RL-KKFPRMVKRENALVLVAR------DVSTRGDERS-LELYKKLARYVVEAAKFIPKNV 452
Query: 536 VCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVV--ETTLALDNYRKACDCGRG 593
F SY ++ +++ D I +E K VFIE + E L + +++ G
Sbjct: 453 GVFTASYEVLEGLLSANVDVRIREET--GKKVFIEKKGASSKENDLLVMAFKEEAKKD-G 509
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
AV V G+ +EG D+ V++ G+P+
Sbjct: 510 AVLLGVMGGRNSEGQDYSGDEMNGVVLVGIPY 541
>gi|402881970|ref|XP_003904529.1| PREDICTED: regulator of telomere elongation helicase 1 [Papio
anubis]
Length = 1301
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VT+ FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTIDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWQEHLR 64
Query: 54 --------------SLITSYVLSK-------PENPV-------KLIYCTRTVHEMEKTLA 85
L + LS E+P+ K+IY +RT ++ + +
Sbjct: 65 DTISARKIAERVQGELFPNQALSSWGNTAAAAEDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHMQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ L + ++DL G + CPY+L+R++ Q A++V
Sbjct: 170 -------RSCHFYNNVEEKGLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIV 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ K G E++
Sbjct: 279 IDQVLEEQTKTAQLGEPHPEFS 300
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|403309188|ref|XP_003945007.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Saimiri boliviensis boliviensis]
Length = 903
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL---NFHP--VVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL P VV S + D I P+V+ G
Sbjct: 606 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEPERVVEFSCGHVIPPDNILPLVICSGIS 665
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ W G+L
Sbjct: 666 NQPLEFTFQKRELPQMMDEAGRILCNLCGVVPGGVVCFFPSYEYLRQVHTHWEKGGLLDR 725
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E T V + LA + C R GA+ SV GK++EGI+F +
Sbjct: 726 LAARKKIFQEPKSTHQVEQVLLAYSRCIQGCGQERGRVTGALLLSVVGGKMSEGINFSDN 785
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 786 LGRCVVMVGMPF 797
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 31/229 (13%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR++LCVN V + +
Sbjct: 227 TKVYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQSLCVNEDVKSLGSV 278
Query: 128 DSVDAAC---------RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C +K+ A + C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHGKKKGAEEEKPKRRRQEKQAACPFYNHEQMDLLRDEALAEVKDIE 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP---KVAGIISKEMQKESVVVFDE 235
L A GK+ CPY+ +R + A +VV YQ LL K AGI ++ VV+ DE
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRKAAGI----RLQDQVVIIDE 394
Query: 236 AHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
AHN+ + SV V L A S++ Q +ER++ RL+A+
Sbjct: 395 AHNLIDTITGMHSVEVSGSQLCQAH---SQLLQYMERYRK----RLKAK 436
>gi|392577022|gb|EIW70152.1| hypothetical protein TREMEDRAFT_29466 [Tremella mesenterica DSM
1558]
Length = 840
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 19/196 (9%)
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP------MVLTRG 498
+ V ++ +SVV+ GT+ PI+ + R L P V+ S ++L+ + P V++ G
Sbjct: 540 REVVEQARSVVLAGGTMEPINDFLRQL--FPFVTPSRIITLSCSHVIPKSNLLTQVVSCG 597
Query: 499 SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGIL 558
++ + K+ RSD + G +++ V +VPDGIV F SYS++D+I TW + +L
Sbjct: 598 PRKIELEFKYSNRSDDSLLAELGSVILSTVGLVPDGIVVFLPSYSFLDKIKHTW--TAVL 655
Query: 559 KEIMQHKLVFIETQDVVETTLALDNYRKAC---------DCGRGAVFFSVARGKVAEGID 609
++ + K VF E Q E L +Y A D +GA+ F+V GK++EGI+
Sbjct: 656 PKLAEKKHVFYEPQTSGEVETVLRDYSLAISTVSPPGIGDKRKGALLFAVVGGKLSEGIN 715
Query: 610 FDRHYGRLVIMFGVPF 625
F GR VIM G+PF
Sbjct: 716 FSDRLGRCVIMVGLPF 731
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 24/183 (13%)
Query: 99 GPAAKILAIGLSSRKNLCVNSRVLA-AEN--RDSVDAACRKRTASWVRALAAENPNIETC 155
G I + L SRK LC+N +V A A N + ++ AC S C
Sbjct: 219 GDTHGISMVPLGSRKQLCINDKVRALARNGGDERMNEACLDMQKS------------SEC 266
Query: 156 EFFENYEKAA----SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQY 211
EF E A AVL V ++D+ G++ G CPY+ R V+ A +V Y
Sbjct: 267 EFLPKSEDVAMLDARDAVLAE-VRDIEDIVQMGRKCGVCPYYSTRRAVKQAQLVTLPYNL 325
Query: 212 LLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIE 271
LL + ++ K VVV DEAHN+ + + S ++ L A +S++ Q +
Sbjct: 326 LLQKNAREALDIDL-KGQVVVIDEAHNLIDTILSIHSTTLTHHHLTSA---ISQLQQYLS 381
Query: 272 RFK 274
RFK
Sbjct: 382 RFK 384
>gi|224061865|ref|XP_002300637.1| predicted protein [Populus trichocarpa]
gi|222842363|gb|EEE79910.1| predicted protein [Populus trichocarpa]
Length = 1183
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 146/621 (23%), Positives = 246/621 (39%), Gaps = 113/621 (18%)
Query: 43 PTGTGKTIALLSLITSYVLSKPENPV-KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
P+ T T A+ L +K + V K+ Y +RT ++ + ++E + +T + P
Sbjct: 117 PSSTEPTAAV-ELAQKVASNKKKKAVPKIYYASRTHSQISQVVSEFR-----KTTYRVPM 170
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
A L+SRK+ C N V EN +D C+ L ++ C F+N
Sbjct: 171 AV-----LASRKHYCTNVHVNRKEN---IDEECK---------LLLKDKEA-GCLQFKNA 212
Query: 162 EKAASAAVLPPG----VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKV 217
K L G V+ ++DL G+ C Y+ AR M A +V Y Y+++P +
Sbjct: 213 NKVRGHPSLQKGGCHEVHDIEDLVKVGQVVKGCSYYAARSMADDAQLVFCPYNYIINPVI 272
Query: 218 AGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRR---QTLEGATRNLSRINQEIERFK 274
G + ++ +++V DEAHNI+++ +A SV V Q L+ + L ++ I +
Sbjct: 273 RGAMEVDIIG-AILVLDEAHNIEDIARDAGSVDVEEDVLQKLQTELQELCPVDPMIYQPL 331
Query: 275 ATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLR 334
A L + R L R W + AL +E NI + + F +L
Sbjct: 332 YEMAQDLLSWIERRKNKLEKREFQHYCSCWAGDKAL-----REFQEANISQ-QCFPILLD 385
Query: 335 RLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEF 394
Q ++ +TE EG S+ G+ +L + + R
Sbjct: 386 CAKQAIKAATDTE---AEGSHLSGMSVVLLEGL-FSSLTYFFSR---------------- 425
Query: 395 LHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSV 454
+ + DF + Y + D + L L C + ++ K + D SV
Sbjct: 426 -NGCQVSDFQLALRRYVK--------RDGKKAGDWTCTLSLWCLNPAVVFKDIADLSLSV 476
Query: 455 VITSGTLSPIDLYPRLL--NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
++TSGTLSP++ + L F + + + +C V++ D P++ +
Sbjct: 477 ILTSGTLSPMNSFSSELGVQFGTCLEAPHVVDVESQ-VCVSVISTSPDNYPLNASYKTAD 535
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ 572
GK L E+ IVP G + FF SY M+++ W ++G + K +F+E +
Sbjct: 536 CYTFQDALGKSLEEICKIVPAGSLVFFPSYKLMEKLSNRWRETGQWSRLNARKPLFVEPR 595
Query: 573 -------------------------------------DVVETTLALDNYRKACDCGRGAV 595
+ ++ T + DN K GA
Sbjct: 596 GGSQEDFDSILKGYYDCIRRDKRPALGRKRKVKKVDANHLDGTESTDNSEKG-----GAA 650
Query: 596 FFSVARGKVAEGIDFDRHYGR 616
F +V RGKV+EGIDF Y R
Sbjct: 651 FLAVCRGKVSEGIDFSDDYAR 671
>gi|440491198|gb|ELQ73865.1| Helicase of the DEAD superfamily, partial [Trachipleistophora
hominis]
Length = 867
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 134/272 (49%), Gaps = 33/272 (12%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
K+ + + FP+ YP Q ++ L K ++E PTGTGK+IA+L + ++
Sbjct: 7 MKINSINITFPF-KPYPAQILTCSKIIDCLKNKKTGIIESPTGTGKSIAILCAVLAW--H 63
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
++ C+RT ++++ +A+L R A K+ L+SR+ LC+N + L
Sbjct: 64 ATNRSTRIFICSRTHKQLDQLVAQL--------RATAYAPKVCV--LASRRALCLNKQAL 113
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
+ V+A+CR C +F E+ A + V+ +++LR
Sbjct: 114 KGD----VNASCRDLVKKG------------ECRYFMGKERLAKSI---GDVHDIEELRQ 154
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G++ CPY+ +R + + A + Y Y++DP V + E+ K+SVV+ DEAHNI++
Sbjct: 155 AGERCTGCPYYASRMLSEDAAITFMPYNYVVDPMVRRTMGIEL-KDSVVIVDEAHNIEDA 213
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
C A S+ + T++ + L + + +E ++
Sbjct: 214 CRSAGSIELTNDTIDIMLKELVGVYRRVEEYR 245
>gi|351703518|gb|EHB06437.1| Fanconi anemia group J protein [Heterocephalus glaber]
Length = 836
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 123/482 (25%), Positives = 199/482 (41%), Gaps = 59/482 (12%)
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
+ +++L + G++ CPY+ AR + + A+++ Y YLLD ++ + + KE VV+
Sbjct: 4 AWDIEELVSLGRKLKACPYYTARELTEDADIIFCPYNYLLDAQIRESMDINL-KEQVVIL 62
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLV--- 289
DEAHNI++ E+ S SV L A L S +N I + D LRA L+
Sbjct: 63 DEAHNIEDCARESASYSVTEVQLRFARDELDSLVNSNIRK---KDHEPLRAVCCSLINWL 119
Query: 290 ----EGLALRGNLPIADAWLSNPALPS----DILKEAVPGNIRRAEHFLHVLRR--LVQY 339
E L R W N L + I P I + H VL++ V
Sbjct: 120 EANTEHLVERDYESSCKIWSGNEMLLNLYKMGITTATFP--ILQG-HLSSVLQKEEKVSP 176
Query: 340 LRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYE---RLHSLM---LTLEITDTDE 393
+ G+ ET V P+ I+A I K L E R +S + I T
Sbjct: 177 IFGKEETIEV----PI-----ISASTQIMLKGLFMVLEYLFRQNSRFADDYKVAIQQTYS 227
Query: 394 FLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPV--LQLSCHDASLAVKPVFDRF 451
+ H I D GF + P +++ + V L C + ++A + +
Sbjct: 228 WTHHTDISD--------KNGFFAV--PKNKKSSRQKNAVHVLNFWCLNPAVAFSDINGKV 277
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+++V+TSGTLSP+ + L + + + + G + F
Sbjct: 278 RTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVWVGTIGSGPKGRNLCATFQHT 337
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
G LL+ + V GI+CF SY ++++ W +G+ + K V +E
Sbjct: 338 ETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLYTGLWHNLELVKTVIVEP 397
Query: 572 Q--------DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
Q ++++ YR D GA+ +V RGKV+EG+DF R VI G+
Sbjct: 398 QGGEKTDFDELLQVYYDAVKYRGEKD---GALLVAVCRGKVSEGLDFSDDNARAVITIGI 454
Query: 624 PF 625
PF
Sbjct: 455 PF 456
>gi|345325239|ref|XP_001508332.2| PREDICTED: regulator of telomere elongation helicase 1
[Ornithorhynchus anatinus]
Length = 1585
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 146/322 (45%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQEDYMAKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHFR 64
Query: 54 SLITSYVLSK--------PENPV--------------------KLIYCTRTVHEMEKTLA 85
I++ +++ P P+ K+IY +RT ++ + +
Sbjct: 65 DTISARKIAERMNGEELFPNRPMSSWGTAATDGDTTAYYTDVPKIIYASRTHSQLTQVIG 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ Y+ K+ +G SR+ LC+N V E+ CRK+ A+
Sbjct: 125 ELRST-TYR-------PKVCVLG--SREQLCINPEVKKQESNHMQIHMCRKKVAT----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ ++ L + ++DL G + CPY+ +R + Q A+++
Sbjct: 170 -------HSCYFYNNVEEKSTEKELITSILDIEDLVKSGSKHKVCPYYFSRSLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDSKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPYDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
INQ + E+ K ++AE+N
Sbjct: 279 INQVLEEQAKVLQQNEIQAEFN 300
>gi|297259357|ref|XP_001113864.2| PREDICTED: regulator of telomere elongation helicase 1-like [Macaca
mulatta]
Length = 1347
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VT+ FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTIDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSK-------PENPV-------KLIYCTRTVHEMEKTLA 85
L + LS E+P+ K+IY +RT ++ + +
Sbjct: 65 DTISARKIAERVQGELFPNQALSSWGNAAAAAEDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHMQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ L + ++DL G + CPY+L+R++ Q A++V
Sbjct: 170 -------RSCHFYNNVEEKGLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIV 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ K G E++
Sbjct: 279 IDQVLEEQTKTVQLGEPHPEFS 300
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 519 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 578
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 579 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 638
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 639 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 694
>gi|77682786|gb|ABB00673.1| EG:33C11.2 [Drosophila orena]
Length = 577
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 147/576 (25%), Positives = 232/576 (40%), Gaps = 87/576 (15%)
Query: 104 ILAIGLSSRKNLCVNSRV-----LAAENRDSVDAACRKRTASWVRALAAENPNIETCEFF 158
+ I L SR+ LC N +V + N +D A +K + + C F
Sbjct: 6 VRCISLGSRQQLCGNPQVRRLKHVGLMNERCLDMATKKSRPNPSKKSRLSTEANSRCPF- 64
Query: 159 ENYEKAASAAVLPPGVYTLQDLR-----------AFGKQQGWCPYFLARHMVQFANVVVY 207
KAA P V +L+DL G G C Y+ +R V+ A +++
Sbjct: 65 ----KAA------PLVESLRDLALNEPLDIEELANEGAACGGCSYYASRSAVEHAQLILL 114
Query: 208 SYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRIN 267
YQ LL + + K S+V+ DEAHN+ + + + RQ LE A +S
Sbjct: 115 PYQLLLQKSARNQLGISL-KGSIVIVDEAHNLLDSVAQLHGSEINRQQLERAKVQISCYK 173
Query: 268 QEIE-RFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILK------EAVP 320
+ + RF + ++ N+++ +R L I D N S +++ E
Sbjct: 174 EHFQKRFNTKNLLKI----NQII--FIVRRLLKILDQRKENQPNSSSMMRTYELTAEGDF 227
Query: 321 GNIRRAEHFLHVLR----RLVQYLRGRLETEN--VEKEGPVSFVAS-ITAHAGIDQKTLR 373
NI E R R VQ R+E E E + PVS S I +QK
Sbjct: 228 FNIDLCELLDFCARTRFARKVQGHADRMEREPRPSENQPPVSTARSLILQRLASEQKQ-- 285
Query: 374 FCYERLHSLMLTLE-ITDTDEFLH-----------------IQTICDFATLVGTYTRGFS 415
E+ + E I D E I+ + F + +
Sbjct: 286 --KEKPKPVKRKAEDIEDKAEEFQEQQKPPRKPVQEAAPSPIRPLLAFLETLTSNAEDGR 343
Query: 416 IIIEPFDERMPHIP-DPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLNF 473
I+++P + +I DP Q + + + +S+VI GT+ P +L +L
Sbjct: 344 ILLDPVGGTLKYILLDPAEQFA---------DIVEEARSIVIAGGTMQPTQELKEQLFTS 394
Query: 474 --HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIV 531
+V R + + D + P V++ G +S KF R+ P + + LL + +V
Sbjct: 395 CQDRLVERFYNHVVADDAVLPFVISNGPSGASLSYKFAHRASPEMLQELSMLLRNLCQVV 454
Query: 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD-- 589
P G+VCF SY Y+D++ SG L+ I K VF E E LDNY A
Sbjct: 455 PGGVVCFLPSYEYLDKVYKYLEQSGTLETIRCRKSVFREISGSAEQL--LDNYALAIKKP 512
Query: 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA+ SV GK++EG++F GR V++ G+P+
Sbjct: 513 ASGGALLLSVVGGKLSEGLNFADDLGRAVLVVGLPY 548
>gi|351702333|gb|EHB05252.1| Putative ATP-dependent RNA helicase DDX11-like protein
[Heterocephalus glaber]
Length = 953
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+VL G
Sbjct: 635 VVKECRAVVIAGGTMQPVSDFREQLLACAGVEAERVVEFSCGHVIPPDNILPLVLCSGPT 694
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCFF SY Y +++A W SG+L
Sbjct: 695 NQQLEFTYQKREVPAMMDEAGRILCNLCNVVPGGLVCFFPSYEYQHQVLAHWGKSGLLTR 754
Query: 561 IMQHKLVFIETQDV--VETTLA-----LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRH 613
+ K +F E + VE LA +++ +A G GA+ +V GK++EGI+F
Sbjct: 755 LAVRKKIFQEPKRAGQVEQVLAAYARCIESCARASGPGTGALLLAVVGGKMSEGINFSDD 814
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 815 LGRCVVMVGMPY 826
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 32/217 (14%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + + E L N R LG I + CV + +++
Sbjct: 277 TKIYYCSRTHSQLAQFVQE-NLCVNEDVRSLGSVQLI--------NDRCVEIQRSQHKSK 327
Query: 128 DSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQ 187
+ KR RA C F+ + + + V ++ L A GK+
Sbjct: 328 SRAEEEKPKRRRQEARA---------ACPFYNHEQMQLLRDEILVEVRDVEQLVALGKEA 378
Query: 188 GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEAL 247
CPY+ +R + A +VV Y + AGI +Q + VV+ DEAHN+ +
Sbjct: 379 RACPYYGSRLAIAAAQLVVLPYPTR---QAAGI---RLQGQ-VVIIDEAHNLIDTITGIH 431
Query: 248 SVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
SV V L + S++ Q ER++ RL+A+
Sbjct: 432 SVEVTGSQL---CQAHSQLLQYTERYRK----RLKAK 461
>gi|145517083|ref|XP_001444430.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411841|emb|CAK77033.1| unnamed protein product [Paramecium tetraurelia]
Length = 905
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 129/276 (46%), Gaps = 37/276 (13%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS-- 62
L++ VYFP+ Y Q SYM + RAL+ K + LLE PTGTGKT++LL +++
Sbjct: 52 LDNTPVYFPHQ-PYDVQKSYMESVIRALNKKQNALLESPTGTGKTLSLLCASLAWLKKNR 110
Query: 63 -------KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNL 115
+P+N +K+IY +RT ++++ ELK K L SR
Sbjct: 111 KDQLNSDQPKN-IKIIYSSRTHAQLKQVAMELK----------KTVYKPNVSMLGSRDQY 159
Query: 116 CVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVY 175
C+ A + ++ +CRK S C+F++ A +
Sbjct: 160 CIRGDFSAIKGT-LLNQSCRKSVKS------------NQCQFYKKEHLILMAQNYSTLIS 206
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
+L + + FG + CPY+ R + FA++++ Y YLL+ ++ E S+++FDE
Sbjct: 207 SLDEAKQFGFKNKLCPYYFERQRLDFADLILLPYNYLLEKDFQDVVEIE---NSILIFDE 263
Query: 236 AHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIE 271
AHN+ + E S + + A ++L + E+E
Sbjct: 264 AHNVQSTAEEGSSFLITHNNIIEAEKDLEKWIDELE 299
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 14/208 (6%)
Query: 424 RMPHIPDPVLQLS----CHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVS 478
++ I D QLS C + SLA +F + S+++TSGTLSP+ + L
Sbjct: 462 KLSFILDQSNQLSINMWCLEPSLAFSRLFSKSIYSILLTSGTLSPMPSWACELRI----- 516
Query: 479 RSFKMSLTRDCICPMVLT-RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
F++ L + I + R F+ R++ +G L+ + I+P+GI+
Sbjct: 517 -PFEVQLVNEHIIDLNKNLRVFQHKTFDFSFNQRNNEEQVSKFGVTLLSLSQIIPNGILV 575
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
F SYS M++ + W + +L + + K E Q E D Y++ +GA+ F
Sbjct: 576 IFSSYSLMNKFRSKWTYNKLLPRLCEIKACLWEPQQSAEMQNVFDLYKQK--SKKGAIMF 633
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+V RGKVAEGIDF R + + GVP+
Sbjct: 634 AVHRGKVAEGIDFSDELCRAIFLVGVPY 661
>gi|340385001|ref|XP_003390999.1| PREDICTED: regulator of telomere elongation helicase 1-like,
partial [Amphimedon queenslandica]
Length = 466
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 42/264 (15%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY-- 59
I +E+V V FP+ YP Q YM ++ +AL + +LE PTGTGKT++LL S+
Sbjct: 9 IHVIENVPVSFPF-TPYPCQIEYMEKVIKALQNNTNAILESPTGTGKTLSLLCATLSWRQ 67
Query: 60 -----------VLSKPENPV----KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKI 104
+ S + P+ K+IY +RT ++ + + ELK + P I
Sbjct: 68 QLPAPVISEWDLQSDSKGPLGGRPKIIYASRTHSQLSQAIHELK------STSYRPKVSI 121
Query: 105 LAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKA 164
+ SR LC+NS V++ E+ AC + A+ ++C ++ N +
Sbjct: 122 IG----SRDQLCINSEVMSKESNAEKVHACHAKVAA------------KSCTYYNNVD-L 164
Query: 165 ASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKE 224
+V + +++L G + CPY+LAR M A+++ Y Y+LD + +
Sbjct: 165 KRLSVPESFIPDIEELVGMGTKNKMCPYYLAREMKTEADLIFMPYNYILDLRTRLVHGIN 224
Query: 225 MQKESVVVFDEAHNIDNVCIEALS 248
+ +VV+ DEAHNI+ VC ++ S
Sbjct: 225 ITN-TVVILDEAHNIERVCEDSSS 247
>gi|146093363|ref|XP_001466793.1| putative helicase [Leishmania infantum JPCM5]
gi|134071156|emb|CAM69841.1| putative helicase [Leishmania infantum JPCM5]
Length = 953
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 125/258 (48%), Gaps = 42/258 (16%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
+ +TV FP++ YP Q +M + + L + LLE PTGTGKT+ LL ++ +
Sbjct: 7 VSGITVSFPFEP-YPAQVEFMRSVVKCLQHGFNGLLESPTGTGKTLCLLCSTLGWLAATS 65
Query: 65 ENPV-----------------KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAI 107
+ V K++YC+RT ++ + + ELK Q +A+
Sbjct: 66 QGAVLRHTSDQDQKGRGKYNHKVVYCSRTHAQLTQVVRELKRTSYAQ-------CFTMAV 118
Query: 108 GLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY-EKAAS 166
L SR+++C+N V + + A C AL +E C FF AA
Sbjct: 119 -LGSREHMCLNKEVTRLPSSQAQHAMCS--------ALRSER----NCRFFRGLLSAAAG 165
Query: 167 AAVLPP--GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKE 224
A++L P V+ ++DL G + G+CPYF R + A+VV+ Y Y+LDP + + E
Sbjct: 166 ASLLSPECAVHDMEDLMREGSRSGFCPYFHERDAAKDADVVLMPYNYVLDPSLHKQLPFE 225
Query: 225 MQKESVVVFDEAHNIDNV 242
+ + +++ DEAHN+ +V
Sbjct: 226 L-ADCILIVDEAHNLPSV 242
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 16/188 (8%)
Query: 451 FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM 510
SV++TSGTLSP+D + L V + D + VL RG ++ F
Sbjct: 435 LHSVLLTSGTLSPLDQFAAELGMEFQVRLKGNHVIQPDQVLGGVLCRGPSGEKLNGGFSF 494
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS-----------GILK 559
RS G L + P G + FF SY+ M+ ++ W G+L
Sbjct: 495 RSSVDYRVGLGMSLANIARNTPGGTLVFFPSYASMNSVVELWQAGSGRAGDTKTVWGMLS 554
Query: 560 EIMQHKLVFIETQDVVETTLALDNYRKACDCG--RGAVFFSVARGKVAEGIDFDRHYGRL 617
E+ K +F+E + + + +++K D RGA+ +V RGK++EGIDF ++GR
Sbjct: 555 EL---KPIFVEPSNSNDLPTIVQSFQKEVDTSPLRGAILLAVCRGKISEGIDFADNHGRC 611
Query: 618 VIMFGVPF 625
V++ G+P+
Sbjct: 612 VLVAGIPY 619
>gi|443694244|gb|ELT95437.1| hypothetical protein CAPTEDRAFT_179377 [Capitella teleta]
Length = 837
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 131/309 (42%), Gaps = 66/309 (21%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPEN- 66
V+V FP+D YP Q YM + L + +LE PTGTGKT+ LL +++ +K
Sbjct: 9 VSVNFPFDP-YPCQVDYMSSVVSCLKTGQNAILESPTGTGKTLCLLCSSLAWLETKRAQI 67
Query: 67 ---------------------------------------PVKLIYCTRTVHEMEKTLAEL 87
P K+IY +RT ++ + + EL
Sbjct: 68 TSQRWNIAQANADDGGEGSLNVGKQDLAGKLNEAAVLLAPPKIIYASRTHSQLTQVIQEL 127
Query: 88 KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAA 147
K R K+ +G SR+ +C++ +V+ E+ CR + S
Sbjct: 128 K-------RSAYSHFKVSVLG--SREQMCIHPQVMKEESNTVKVHMCRSKVTS------- 171
Query: 148 ENPNIETCEFFENYEKAASAAV---LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
TC F+ N + SA + ++DL GK+ CPY++AR + A++
Sbjct: 172 -----RTCHFYNNMDTEFSADAKHNFTNQLMDIEDLVVQGKKMNCCPYYVARELKNDADI 226
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
+ Y YLLDPK E+Q ++V+FDEAHN++ +C ++ S + A R +
Sbjct: 227 IFLPYNYLLDPKSRKAHGVELQG-NIVIFDEAHNLEKMCEDSASFDFTSTDIASAMREVD 285
Query: 265 RINQEIERF 273
+ ++
Sbjct: 286 SVAGRLQEL 294
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTLSPI + + + + + L++G D P+ + ++ R
Sbjct: 482 KSIILTSGTLSPISSFKSEMGIDFQIELENPHVIDPKQVWVGTLSKGPDNEPLCSDYNTR 541
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
++ G +V IVP G++ FF SY MD+ + W + + Q K V++E
Sbjct: 542 FKESYQKSLGNAVVNFSRIVPHGLLLFFPSYPVMDQCVTNWRSGTLWSRMDQMKSVYVEP 601
Query: 572 QDVVE--TTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
++ E TT+A + D GA F +V RGKV+EG+DF GR V++ G+P+
Sbjct: 602 RNKHEFNTTMAAYYDKINDDTCNGATFAAVCRGKVSEGLDFADRNGRAVVITGLPY 657
>gi|338719447|ref|XP_001492963.3| PREDICTED: regulator of telomere elongation helicase 1-like [Equus
caballus]
Length = 1344
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 141/323 (43%), Gaps = 68/323 (21%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQEEYMTKVLECLQKKVNGVLESPTGTGKTLCLLCTTLAWREHLH 64
Query: 54 --------------SLITSYVLSKPENPV---------------KLIYCTRTVHEMEKTL 84
L LS N K+IY +RT ++ + +
Sbjct: 65 DAISARKIAARAQGELFPDRALSSWGNAASDGDGDNTACYTDIPKIIYASRTHSQLTQVI 124
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
+EL+ +Y+ R L SR+ LC++ V E+ CRK+ AS
Sbjct: 125 SELRNT-SYRPR---------VCVLGSREQLCIHPEVKKQESNHMQIHLCRKKVAS---- 170
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A++
Sbjct: 171 --------RSCHFYNNVEEKSLEQELAAPILDIEDLVKSGNRHKLCPYYLSRNLKQQADI 222
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
+ Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 IFMPYNYLLDAKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESASFDL---TPHDVASGLD 278
Query: 265 RINQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ K G L E++
Sbjct: 279 VIDQVLEEQTKVAQQGDLLLEFS 301
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+++++TSGTL+P+ + + V + + I V+ +G D +S+ FD R
Sbjct: 474 RTLILTSGTLAPVSSFALEMQIPFPVCLENPHVIDKHQIWVGVVPKGPDGAQLSSAFDKR 533
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W +++ K VF+E
Sbjct: 534 FSDTCLASLGKALGNIARVVPHGLLVFFPSYPVMEKSLEFWRAQDFARKLEALKPVFVEP 593
Query: 572 QDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + +D Y A GAVF +V RGKV+EG+DF GR VI+ G+P+
Sbjct: 594 RSKGGLSEVMDAYYSTVASPGASGAVFLAVCRGKVSEGLDFADTNGRGVIVTGLPY 649
>gi|398019061|ref|XP_003862695.1| helicase, putative [Leishmania donovani]
gi|322500925|emb|CBZ36002.1| helicase, putative [Leishmania donovani]
Length = 953
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 125/258 (48%), Gaps = 42/258 (16%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
+ +TV FP++ YP Q +M + + L + LLE PTGTGKT+ LL ++ +
Sbjct: 7 VSGITVSFPFEP-YPAQVEFMRSVVKCLQHGFNGLLESPTGTGKTLCLLCSTLGWLAATS 65
Query: 65 ENPV-----------------KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAI 107
+ V K++YC+RT ++ + + ELK Q +A+
Sbjct: 66 QGAVLRHTSDQDQKGRGKYNHKVVYCSRTHAQLTQVVRELKRTSYAQ-------CFTMAV 118
Query: 108 GLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY-EKAAS 166
L SR+++C+N V + + A C AL +E C FF AA
Sbjct: 119 -LGSREHMCLNKEVTRLPSSQAQHAMCS--------ALRSER----NCRFFRGLLSAAAG 165
Query: 167 AAVLPP--GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKE 224
A++L P V+ ++DL G + G+CPYF R + A+VV+ Y Y+LDP + + E
Sbjct: 166 ASLLSPECAVHDMEDLMREGSRSGFCPYFHERDAAKDADVVLMPYNYVLDPSLHKQLPFE 225
Query: 225 MQKESVVVFDEAHNIDNV 242
+ + +++ DEAHN+ +V
Sbjct: 226 L-ADCILIVDEAHNLPSV 242
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 16/188 (8%)
Query: 451 FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM 510
SV++TSGTLSP+D + L V + D + VL RG ++ F
Sbjct: 435 LHSVLLTSGTLSPLDQFAAELGMEFQVRLKGNHVIQPDQVLGGVLCRGPSGEKLNGGFSF 494
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS-----------GILK 559
RS G L + P G + FF SY+ M+ ++ W G+L
Sbjct: 495 RSSVDYRVGLGMSLANIARNTPGGTLVFFPSYASMNSVVELWQAGSGRAGDTKTVWGMLS 554
Query: 560 EIMQHKLVFIETQDVVETTLALDNYRKACDCG--RGAVFFSVARGKVAEGIDFDRHYGRL 617
E+ K +F+E + + + +++K D RGA+ +V RGK++EGIDF ++GR
Sbjct: 555 EL---KPIFVEPSNSNDLPTIVQSFQKEVDTSPLRGAILLAVCRGKISEGIDFADNHGRC 611
Query: 618 VIMFGVPF 625
V++ G+P+
Sbjct: 612 VLVAGIPY 619
>gi|403222902|dbj|BAM41033.1| uncharacterized protein TOT_030000294 [Theileria orientalis strain
Shintoku]
Length = 745
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 138/577 (23%), Positives = 233/577 (40%), Gaps = 123/577 (21%)
Query: 66 NPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLA-A 124
N +++ C+RT ++ + + E + L + L + LAIG R ++C+N + +
Sbjct: 164 NKTQIVICSRTFSQLNQFVKEFRKL-----KELNGNVR-LAIG-CRRSHVCINDGIKSKC 216
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFG 184
+N D ++ CR+ + R+ E I TC + L+DL G
Sbjct: 217 KNSDELNEECRRSKCEY-RSDTMELSEIATCYALD-----------------LEDLVRLG 258
Query: 185 KQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCI 244
K C Y+ V A+VV+ Y +++ + + + K+++V+FDE HN+
Sbjct: 259 KDLNSCAYYSNLTTVPNADVVLAPYVTIINESIRENMGLRI-KDNIVIFDEGHNLIEAIT 317
Query: 245 EALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAW 304
E+ S + L G L ++ + +FK+ G L R+ E + L L D
Sbjct: 318 ESHSCKL---NLRGLKDLLEQLKGYLNKFKSEIKGVL---LERITEIMKLVKGL--VDGL 369
Query: 305 LSNPALPSDILKEAVPGNIRRAEHF-LHVL------RRLVQYLRGRLETENVEKEGPVSF 357
A+ S+ +K E F H + + ++LRG E +
Sbjct: 370 --ERAVESENMKITTFNVKYGLEDFKFHEIISFLSSTQFCRHLRGYAERQ---------- 417
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
I +A + +K CY S++ L+ F+++ CD + I
Sbjct: 418 -YHIKVNAELGEKVA--CYT---SMIYALK-----SFIYLLLYCDTNDQILVSKDESDTI 466
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY---------P 468
+E F PV S DA +SV++ SGTLSPI+ + P
Sbjct: 467 LEIF---------PVA--SVRDA-----------RSVIVMSGTLSPIEEFLSLVPAKTEP 504
Query: 469 RLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMV 528
+ PV + M+ D M L D L+ +V
Sbjct: 505 YIHKSPPVFANDRFMTAIIDRALIMALEYLCD----------------------LIENLV 542
Query: 529 SIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKAC 588
+VP+GIVCFF SYSY++ + SG + ++ K VF E ++V Y + C
Sbjct: 543 EVVPNGIVCFFASYSYLNVFYNFFVKSGTMDKVSSKKTVFREQKNVN----VFPEYSRNC 598
Query: 589 DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
RGA+ +V G +EG+DF RLV++ G+P+
Sbjct: 599 -LERGAILLAVFGGNQSEGVDFSDELARLVLLVGIPY 634
>gi|342180293|emb|CCC89770.1| putative helicase [Trypanosoma congolense IL3000]
Length = 965
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 10/204 (4%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
L C D S ++K V D S+++TSGTLSP+D + L H V + + +
Sbjct: 422 TLSYWCMDISRSIKGVVDSTHSLLLTSGTLSPLDHFAMELGIHFEVRLKGDHVIEQKQVV 481
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
VL +G ++ + R G G LV + ++ P G++ FF SY M+ +
Sbjct: 482 ASVLCKGPGGERLNGSYAFRCGAGYRGAIGATLVNISTLTPGGMLVFFPSYVAMNAAVDL 541
Query: 552 W-NDSGILKE-------IMQHKLVFIETQDVVETTLALDNYRKACDCG--RGAVFFSVAR 601
W SG + E ++++K VF+E + + L +Y++ D RGA+ +V R
Sbjct: 542 WRTGSGRVGETETIWAALVKNKPVFVEPGNAEDANTVLKSYQQEVDKDPTRGALLLAVCR 601
Query: 602 GKVAEGIDFDRHYGRLVIMFGVPF 625
G+ EG+DF H+GR V++ G+PF
Sbjct: 602 GRTGEGVDFADHHGRCVVVVGIPF 625
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 136/275 (49%), Gaps = 36/275 (13%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV---- 60
++++ V FP+ + Y Q YM + R+L + LLE PTGTGKT+ LL +++
Sbjct: 6 IDNIEVAFPF-SPYTVQVEYMQAVLRSLKGAHNALLESPTGTGKTMCLLCATLAWLEDWR 64
Query: 61 -------LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRK 113
+ P +++YC+RT ++ + + E + +TR+ + +A+ L SR
Sbjct: 65 AYCRSNGFNDPTLLRRVVYCSRTHAQLTQVIREFE-----RTRY--SSCFSMAV-LGSRD 116
Query: 114 NLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAA---SAAVL 170
++CVN +V+ ++ + C S +R E N C FF Y+ + ++ +
Sbjct: 117 HMCVNPQVVRLPSQHAQQKMC-----STLR----EERN---CRFFRGYQGYSDNKNSLMD 164
Query: 171 PPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESV 230
V+ ++DL G++ G CPYF R + A++V Y Y+ D + + E+ S+
Sbjct: 165 EFWVHDMEDLVKEGQKCGLCPYFYERDKARDADIVFLPYNYVFDTSLRKQLPFELSG-SI 223
Query: 231 VVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
++ DEAHN+ +V ++++ L A + SR
Sbjct: 224 LIVDEAHNLPSVLGAVSGMNLQPLDLTNAIHDCSR 258
>gi|302504842|ref|XP_003014642.1| hypothetical protein ARB_07204 [Arthroderma benhamiae CBS 112371]
gi|291177948|gb|EFE33739.1| hypothetical protein ARB_07204 [Arthroderma benhamiae CBS 112371]
Length = 812
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 15/205 (7%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLY-PRLLNFHP---VVSRSFKMSLTRDCICPMV 494
D + K + + ++V++ GT+ P+D Y LL++ P + + ++ + +D + +
Sbjct: 498 DPTSRFKELVEDARAVILAGGTMEPMDDYVNHLLSYLPREKIKTFTYGHVIPKDNLMAIP 557
Query: 495 LTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW-N 553
+ RG D + FD R + + G+ +V SI+PDG+V FF SY Y+ ++ W +
Sbjct: 558 IDRGMDGTEFNFTFDQRRSEKMIISLGRTIVRYCSIIPDGVVVFFPSYDYLATVLKVWSS 617
Query: 554 DSGILKEIMQHKLVFIETQDV----------VETTLALDNYRKACDCGRGAVFFSVARGK 603
SGIL + + K +F E Q T L Y + D G+G + SV GK
Sbjct: 618 SSGILNSLSRLKPIFHEPQSTGSMNVSANANTSTDSLLSKYSASVDAGKGGLLLSVMGGK 677
Query: 604 VAEGIDFDRHYGRLVIMFGVPFQYT 628
++EGI+F GR VI+ G+PF T
Sbjct: 678 LSEGINFSDALGRGVIVVGLPFPNT 702
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 46 TGKTIALLSLITSYV----LSKPENPVKLIYCTRTVHEMEKTLAELK------------- 88
+ T+ALL + L + VK+IYC+RT ++ + E++
Sbjct: 117 SSDTLALLEKLKGPAQRIELEEDNESVKIIYCSRTHSQLIQFAQEMRRVMPISSIPPDLD 176
Query: 89 --LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAAC----RKRTASWV 142
L + I L+SRK LC+N V + + +++ C R A+
Sbjct: 177 DNLKEEKKENQQDEGEWIKHTPLASRKTLCINPSVRSLSSATAINERCLEIQRPNAAAEH 236
Query: 143 RA--LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQ 200
+ L ++ ++T +F ++ L V ++DL G + G CPY+ +R ++
Sbjct: 237 KCPYLPTKDNELKTSQFQDH---------LLARVNDIEDLPPLGTKMGICPYYASRTAMR 287
Query: 201 FA--NVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEG 258
+ VV Y LL ++ K SV+V DEAHN+ + + SV+V L
Sbjct: 288 ASATEVVTLPYPLLLQQSAREALNLSA-KNSVIVIDEAHNLVDAIVNIHSVTVSLSQLRT 346
Query: 259 ATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
A L++I RFK+ GR R +L+
Sbjct: 347 A---LAQITTYARRFKSRLKGRNRVYIAQLI 374
>gi|147865346|emb|CAN84083.1| hypothetical protein VITISV_018998 [Vitis vinifera]
Length = 1261
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 148/667 (22%), Positives = 254/667 (38%), Gaps = 128/667 (19%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDA---KGHC--LLEMPTGTGKTIALLSLI 56
++ + + V FPY Y Q ++M + LD GHC LLE PTGTGK+++LL
Sbjct: 13 VYHIGGIAVEFPY-QPYGSQLAFMGRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSA 71
Query: 57 TSYVLS-KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNL 115
++ + +P+N N H P + L+ L
Sbjct: 72 LAWQKNYRPKN------------------------MNGDVSHSKPDPEALSDPLGHGGGF 107
Query: 116 CVN---SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP 172
S + A EN + AA + T + N K L
Sbjct: 108 VPETEPSSIPAPENSEPASAA---------NGKNKKKKRKPTIFYASNMHKVKGHPSLQK 158
Query: 173 G----VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
G + ++DL G+ C Y+ AR M A +V Y Y+++P + G + +++
Sbjct: 159 GGCHEAHDIEDLVKVGQVVKGCAYYAARDMADNAQLVFCPYSYIINPVIRGAMELDIEG- 217
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEY--- 285
++++ DEAHNI+++ +A SV V L ++ E+ + DA + Y
Sbjct: 218 AILILDEAHNIEDMARDAGSVDVEEDVLH-------KLQTELGQLCPADAMIYQPLYEMT 270
Query: 286 -------NRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLV- 337
+R L R W + A L+E NI ++ +L+
Sbjct: 271 QDIISWIDRKKNTLEKREFQHYFSCWTGDKA-----LRELQEANI--SQQSFPILQECAR 323
Query: 338 QYLRGRLETENVEKEGPVSFVASITAH-AGIDQKTLRFCYERLHSLMLTLEITDTDEFLH 396
+ ++ ++ E S AH +G+ TL Y L + D L
Sbjct: 324 KAIKAAIDIE------------SRVAHLSGMSVITLEGLYSALSYFFSENGLHTVDYQLA 371
Query: 397 IQTIC--DFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSV 454
+Q D ++ G++T FS L C + ++ + + D SV
Sbjct: 372 LQRYVKKDAGSVAGSWTCTFS-------------------LWCLNPAVVFRGIADLSLSV 412
Query: 455 VITSGTLSPIDLYPRLL--NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
++TSGTLSP+ + L F + + + + + + P++ +
Sbjct: 413 ILTSGTLSPMHSFSSELGVQFGTCLEAPHVIDIESQ-LWAAIFSTSPGNYPLNASYKTAD 471
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG-----------ILKEI 561
GK L E+ IVP G + FF SY M+++ + W ++ ILK
Sbjct: 472 AYAFQDALGKSLEEIFKIVPGGTLVFFPSYKLMEKLCSRWRETEPRGGSQDDFEPILKAY 531
Query: 562 MQH-----KLVFIETQDVVETTLALDNYRKACDCG--RGAVFFSVARGKVAEGIDFDRHY 614
+ K + + L+ + +++ D +GA F +V RGKV+EGIDF
Sbjct: 532 YESVRRGTKPTLGRKRRTKKMDLSQSDEKESQDNSKKKGAAFLAVFRGKVSEGIDFSDEN 591
Query: 615 GRLVIMF 621
R V+ F
Sbjct: 592 ARAVVSF 598
>gi|397477200|ref|XP_003809966.1| PREDICTED: regulator of telomere elongation helicase 1 isoform 2
[Pan paniscus]
Length = 1401
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 145/322 (45%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY----- 59
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL ++
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 60 --------------------VLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGEVFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ +CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHLQIHSCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ KA G E++
Sbjct: 279 IDQVLEEQTKAAQQGEPHPEFS 300
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGGFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|407410515|gb|EKF32919.1| helicase, putative [Trypanosoma cruzi marinkellei]
Length = 951
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 138/274 (50%), Gaps = 38/274 (13%)
Query: 7 DVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK--- 63
DV V FP+ N YP Q YM + AL+ + + LLE PTGTGKT+ LL + +++ +
Sbjct: 8 DVGVSFPF-NPYPAQVEYMRAVIDALNGRCNALLESPTGTGKTLCLLCSVLAWLEKRHGM 66
Query: 64 --------PENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIG-LSSRKN 114
++IYC+RT ++ + + ELK +TR+ I ++ L SR++
Sbjct: 67 TQQRYQMEGAGRTRVIYCSRTHAQLSQVIRELK-----RTRY----GDIFSMSLLGSREH 117
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE-KAASAAVLPPG 173
+CVN +VL R TA +++ + C F+ ++ + + G
Sbjct: 118 MCVNPQVL------------RLPTAQAQQSMCNTLREEKNCRFYRGFQARNGHNTAMKDG 165
Query: 174 --VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVV 231
V+ ++DL + G++ G+CPY+ R + A++V Y Y+ D + + ++ K S++
Sbjct: 166 RWVHDMEDLVSDGRKCGYCPYYSEREEAKEADIVFLPYNYVFDLSIRKQLPFDL-KGSIL 224
Query: 232 VFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
+ DEAHN+ +V + ++++ L A + SR
Sbjct: 225 IVDEAHNLPSVLGASSCMNLQPLELTNAIHDCSR 258
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 16/202 (7%)
Query: 437 CHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLT 496
C D S AVK + S+++TSGTLSP++ + L VS + ++ + VL
Sbjct: 425 CLDTSCAVKKLVAGLNSLLLTSGTLSPLEHFAAELGVEFGVSLKGAHVIQQNQVLGCVLC 484
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS- 555
+G ++ + R+ G LV + P G++ FF SY ++ I W
Sbjct: 485 KGPSGEKLNGAYAYRNSVDYRVGLGMSLVNISRNTPGGVLVFFPSYVALNAAIELWRAGS 544
Query: 556 ----------GILKEIMQHKLVFIETQDVVETTLALDNYRKACDCG--RGAVFFSVARGK 603
G+L+++ K VF+E + + + +++ D RGA+ +V RGK
Sbjct: 545 GRPGETLTVWGMLEDL---KPVFVEPVEASDLQTIVSRFQREVDSAPSRGAILLAVCRGK 601
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
++EGIDF ++GR V++ G+PF
Sbjct: 602 ISEGIDFADNHGRCVVVAGIPF 623
>gi|119595649|gb|EAW75243.1| hCG22751, isoform CRA_d [Homo sapiens]
Length = 1023
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHLQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ KA G E++
Sbjct: 279 IDQVLEEQTKAAQQGEPHPEFS 300
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|195162511|ref|XP_002022098.1| GL14463 [Drosophila persimilis]
gi|229891625|sp|B4GU19.1|RTEL1_DROPE RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|194103996|gb|EDW26039.1| GL14463 [Drosophila persimilis]
Length = 1009
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 108/197 (54%), Gaps = 5/197 (2%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 454 IVNFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 511
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + F R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 512 QVYVKIIGTGPDRQQLISNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKC 571
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GAVF +V RGKV+EG+
Sbjct: 572 VDAWQASGLWADISCKKPIFVEPRGKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+PF
Sbjct: 632 DFADRNGRAVIITGLPF 648
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 136/312 (43%), Gaps = 63/312 (20%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENP 67
+ V+FP++ Y Q YM ++ L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YNVQRDYMEKVIICLRDGTNGVLESPTGTGKTLSLLCASLAWIRTRQSEH 67
Query: 68 V---------------------------------------KLIYCTRTVHEMEKTLAELK 88
K+IY +RT ++ + + ELK
Sbjct: 68 QQQMIKLKATSKEGGPGSGPGGDLSELAMTVGQANNWGVPKVIYASRTHSQLNQAMRELK 127
Query: 89 LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAE 148
+T + A + ++ L SR LC++ V+ + + C+ R S
Sbjct: 128 -----RTAY----ANMRSVVLGSRDQLCIHPEVMKEQGNSNKVNLCKLRVHS-------- 170
Query: 149 NPNIETCEFFENYE-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVY 207
+TC F E K P + ++DL G++ CPY+ ++ +V A++
Sbjct: 171 ----KTCTFQLRVESKKDHPDFRGPSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFM 226
Query: 208 SYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRIN 267
Y YLLDPK E+ ++++ DEAHNI+ +C E+ SV +R + A +++ I
Sbjct: 227 PYNYLLDPKARKANKIEL-GNTIIILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIM 285
Query: 268 QEIERFKATDAG 279
+ ++ +AG
Sbjct: 286 KVFTSGESQEAG 297
>gi|198467617|ref|XP_001354453.2| GA17940 [Drosophila pseudoobscura pseudoobscura]
gi|229891755|sp|Q29FS3.2|RTEL1_DROPS RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|198149329|gb|EAL31506.2| GA17940 [Drosophila pseudoobscura pseudoobscura]
Length = 1009
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 108/197 (54%), Gaps = 5/197 (2%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 454 IVNFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 511
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + F R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 512 QVYVKIIGTGPDRQQLISNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKC 571
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GAVF +V RGKV+EG+
Sbjct: 572 VDAWQASGLWADISCKKPIFVEPRGKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+PF
Sbjct: 632 DFADRNGRAVIITGLPF 648
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 136/312 (43%), Gaps = 63/312 (20%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENP 67
+ V+FP++ Y Q YM ++ L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YNVQRDYMEKVIICLRDGTNGVLESPTGTGKTLSLLCASLAWIRTRQSEH 67
Query: 68 V---------------------------------------KLIYCTRTVHEMEKTLAELK 88
K+IY +RT ++ + + ELK
Sbjct: 68 QQQMIKLKATSKEGGPGSGPGGDLSELAMTVGQANNWGVPKVIYASRTHSQLNQAMRELK 127
Query: 89 LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAE 148
+T + A + ++ L SR LC++ V+ + + C+ R S
Sbjct: 128 -----RTAY----ANMRSVVLGSRDQLCIHPEVMKEQGNSNKVNLCKLRVHS-------- 170
Query: 149 NPNIETCEFFENYE-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVY 207
+TC F E K P + ++DL G++ CPY+ ++ +V A++
Sbjct: 171 ----KTCTFQLRVESKKDHPDFRGPSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFM 226
Query: 208 SYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRIN 267
Y YLLDPK E+ ++++ DEAHNI+ +C E+ SV +R + A +++ I
Sbjct: 227 PYNYLLDPKARKANKIEL-GNTIIILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIM 285
Query: 268 QEIERFKATDAG 279
+ ++ +AG
Sbjct: 286 KVFTSGESQEAG 297
>gi|1517818|gb|AAB06963.1| helicase, partial [Homo sapiens]
Length = 734
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 461 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICIGVS 520
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + S+V G+VCFF SY Y+ ++ A W G+L
Sbjct: 521 NQPLEFTFQKRDLPQMMDEVGRILCNLCSVVSGGVVCFFPSYEYLRQVHAHWEKGGLLGH 580
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 581 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGPVTGALLLSVVGGKMSEGINFSDN 640
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 641 LGRCVVMVGMPF 652
>gi|332858954|ref|XP_003317100.1| PREDICTED: regulator of telomere elongation helicase 1 isoform 1
[Pan troglodytes]
gi|410301716|gb|JAA29458.1| regulator of telomere elongation helicase 1 [Pan troglodytes]
gi|410341613|gb|JAA39753.1| regulator of telomere elongation helicase 1 [Pan troglodytes]
Length = 1220
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHLQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ KA G E++
Sbjct: 279 IDQVLEEQTKAAQQGEPHPEFS 300
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGGFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|410219260|gb|JAA06849.1| regulator of telomere elongation helicase 1 [Pan troglodytes]
gi|410263662|gb|JAA19797.1| regulator of telomere elongation helicase 1 [Pan troglodytes]
Length = 1220
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHLQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ KA G E++
Sbjct: 279 IDQVLEEQTKAAQQGEPHPEFS 300
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGGFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|403282703|ref|XP_003932780.1| PREDICTED: LOW QUALITY PROTEIN: regulator of telomere elongation
helicase 1 [Saimiri boliviensis boliviensis]
Length = 1604
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 140/314 (44%), Gaps = 65/314 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY----- 59
L VTV FP++ Y Q YM ++ L K + +LE PTGTGKT+ LL ++
Sbjct: 6 LNGVTVDFPFEP-YKCQQEYMAKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 60 ---------------------------VLSKPENPV-------KLIYCTRTVHEMEKTLA 85
+ +P K+IY +RT ++ + ++
Sbjct: 65 DTISARKIAERLQGELFPDRALSSWGSAAAADGDPTACYTDIPKIIYASRTHSQLTQVIS 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHMQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSRHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + L + R
Sbjct: 223 FMPYNYLLDAKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDR 281
Query: 266 INQEIERFKATDAG 279
+ + E+ KA G
Sbjct: 282 VLE--EQTKAAQQG 293
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 96/200 (48%), Gaps = 3/200 (1%)
Query: 429 PDPVLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTR 487
P VL C +++ V +++++TSGTL+P+ + + V + +
Sbjct: 449 PGKVLSYWCFSPGHSMRELVRQGVRALILTSGTLAPVSSFALEMQIPFPVCLENPHIIDK 508
Query: 488 DCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDE 547
I V+ RG D +S+ FD R + GK L + +VP G++ FF SY M++
Sbjct: 509 HQIWVGVVPRGPDGAQLSSAFDRRFSEECLSSLGKALGNIARVVPCGLLVFFPSYPVMEK 568
Query: 548 IIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVA 605
+ W + ++I K +F+E + V + + Y R GA F +V RGK +
Sbjct: 569 SLEFWRARDLARKIEALKPLFVEPRSKVSFSETISAYYERITSPGSTGAAFLAVCRGKAS 628
Query: 606 EGIDFDRHYGRLVIMFGVPF 625
EG+DF GR VI+ G+P+
Sbjct: 629 EGLDFSDTNGRGVIVTGLPY 648
>gi|296211273|ref|XP_002752340.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Callithrix jacchus]
Length = 903
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 93/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL---NFHP--VVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL P VV S + D I P+V+ G
Sbjct: 606 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEPERVVEFSCGHVIPPDNILPLVICSGIS 665
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G +L + +VP G+VCFF SY Y+ ++ W G+L
Sbjct: 666 SQPLEFTFQKRELPQMMDEAGGILCNLCGVVPGGVVCFFPSYEYLRQVHTHWEKGGLLDR 725
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E T V + LA + C R GA+ SV GK++EGI+F +
Sbjct: 726 LAARKKIFQEPKSTHQVEQVLLAYSRCIQGCGQERGRVTGALLLSVVGGKMSEGINFSDN 785
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 786 LGRCVVMVGMPF 797
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKVYYCSRTHSQLAQ------FVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKR----TASWVRALAAENPNIET-CEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R + P + C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRPEKQAACPFYNHEQMGLLRDEALAEVKDIE 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 397
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L + S++ Q +ER+ + RL+A+
Sbjct: 398 LIDTITGMHSVEVSGSQL---CQAYSQLLQYMERY----SKRLKAK 436
>gi|410055436|ref|XP_003953846.1| PREDICTED: regulator of telomere elongation helicase 1 [Pan
troglodytes]
Length = 1301
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHLQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ KA G E++
Sbjct: 279 IDQVLEEQTKAAQQGEPHPEFS 300
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGGFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|350414537|ref|XP_003490348.1| PREDICTED: regulator of telomere elongation helicase 1 homolog
[Bombus impatiens]
Length = 980
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 104/198 (52%), Gaps = 5/198 (2%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
V+ C +++ + D+ +S+++TSGTLSP+ + L + + D I
Sbjct: 452 VISYWCFSPGFSMQQLMDQGVRSIILTSGTLSPLKPFISELGIPIELQLENPHIVKGDQI 511
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
C VL++G D +++ F+ R+DP + G+ ++ I+P G++ FF SY M +
Sbjct: 512 CVGVLSQGPDGYSLNSSFNTRNDPKYIASLGRTVLNFSCIIPHGLLVFFPSYPIMKKCKE 571
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYR---KACDCGRGAVFFSVARGKVAEG 607
W +G+ +I K +++E Q ++ Y K C +GA+F +V RGKV+EG
Sbjct: 572 EWQTTGLWTKIADRKPIYVEPQYRDGFINVMNEYYEKIKDPSC-KGAIFMAVCRGKVSEG 630
Query: 608 IDFDRHYGRLVIMFGVPF 625
+DF GR V++ G+PF
Sbjct: 631 LDFANANGRAVLITGLPF 648
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 120/290 (41%), Gaps = 66/290 (22%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKT--------------- 49
+ +V V FP+ Y Q YM+++ L + +LE PTGTGKT
Sbjct: 6 INNVIVNFPF-KPYSIQEEYMVKVIECLQNGKNGVLESPTGTGKTLSLLCSSLSWLLTKK 64
Query: 50 --IALLSLITSYVL---------------------SKPEN-----PVKLIYCTRTVHEME 81
+ SLI + SKP + P K+IY +RT ++
Sbjct: 65 AQLQAQSLIGAIEKPDFGGHFFKQLSNGLKEGTGDSKPTSNLGWAPPKIIYASRTHSQLS 124
Query: 82 KTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
+ + ELK +H+ A L SR LC++ V + + C + S
Sbjct: 125 QAMQELK---RTSYKHVSTAV------LGSRDQLCIHPEVSKETSSSNKIYMCHSKIKS- 174
Query: 142 VRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
TC ++ N E + V ++DL G++ CPYFL+R + Q
Sbjct: 175 -----------RTCFYYNNVESRKDDPLFKQEVLDIEDLVKAGQKFKCCPYFLSRELKQN 223
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSV 251
A++ Y YLLD K ++Q ++++ DEAHNI+ C EA S+ +
Sbjct: 224 ADITFMPYNYLLDSKSRKTQGIDIQ-NNIILLDEAHNIEKTCEEAASLQI 272
>gi|84627555|gb|AAI11734.1| DDX11 protein [Homo sapiens]
Length = 906
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICIGVS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + S+V G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRDLPQMMDEVGRILCNLCSVVSGGVVCFFPSYEYLRQVHAHWEKGGLLGH 728
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGPVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
>gi|380013392|ref|XP_003690744.1| PREDICTED: regulator of telomere elongation helicase 1 homolog,
partial [Apis florea]
Length = 970
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%)
Query: 425 MPHIPDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKM 483
+P ++ C +++ + D+ +++++TSGTLSP+ + L V
Sbjct: 445 LPKNEGKIINYWCFSPGFSMQQLKDQGTRAIILTSGTLSPLKPFISELGIPIEVQLENSH 504
Query: 484 SLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYS 543
+ D IC +L+RG D +++ F+ R+DP + G+ + +VP G++ FF SY
Sbjct: 505 IVKEDQICVGILSRGPDGYSLNSSFNTRNDPKYIGSLGQTIFNFSCLVPYGLLVFFPSYP 564
Query: 544 YMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKAC---DCGRGAVFFSVA 600
M + W ++G+ +I K +++E Q ++ Y + C +GA+F +V
Sbjct: 565 IMKKCKEEWQNTGLWTKIADRKPIYVEPQYKDGFINVMNEYYEKIRNPSC-KGAIFMAVC 623
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPF 625
RGKV+EG+DF GR V++ G+PF
Sbjct: 624 RGKVSEGLDFANANGRAVLITGLPF 648
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 124/290 (42%), Gaps = 66/290 (22%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
+ ++ V FP+ Y Q YM ++ + L + +LE PTGTGKT++LL
Sbjct: 6 INNIIVNFPF-KPYSIQEEYMAKVIQCLQNSKNGVLESPTGTGKTLSLLCSSLSWLLSKK 64
Query: 54 -SLITSYVLSKPENPV-------------------------------KLIYCTRTVHEME 81
L +++K E P K+IY +RT ++
Sbjct: 65 AQLQAQSLMNKIEEPNFSGHFFKQLNNGLKKSTGDTEPTIVFNWNAPKIIYASRTHSQLS 124
Query: 82 KTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
+ + ELK +H+G A L SR LC++ V N + C + S
Sbjct: 125 QAMQELK---RTSYKHVGTAV------LGSRDQLCIHPEVSKETNSSNKIYMCHSKVKS- 174
Query: 142 VRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
TC ++ N E + ++DL G++ CPYFL+R + Q
Sbjct: 175 -----------RTCFYYNNVESRKDDPFFKQEILDIEDLVKAGQKFKCCPYFLSRELKQN 223
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSV 251
A+++ Y Y+LD K I ++Q ++++FDEAHNI+ +C E S+ +
Sbjct: 224 ADIIFMPYNYILDTKSRKIQGIDIQ-NNIILFDEAHNIEKICEETASLQI 272
>gi|294654380|ref|XP_456430.2| DEHA2A02112p [Debaryomyces hansenii CBS767]
gi|218511979|sp|Q6BZD9.2|CHL1_DEBHA RecName: Full=ATP-dependent RNA helicase CHL1; AltName:
Full=Chromosome loss protein 1
gi|199428836|emb|CAG84382.2| DEHA2A02112p [Debaryomyces hansenii CBS767]
Length = 820
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 121/592 (20%), Positives = 246/592 (41%), Gaps = 106/592 (17%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
PVK+ + +RT ++ + +L + +++ +I L+SRK LC++ ++ N
Sbjct: 190 PVKIFFSSRTHSQLSQFSHQLNMTE-FESSLDNIPERIKFSPLASRKQLCIHPKISKLSN 248
Query: 127 RDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-------GVYTLQD 179
S++ AC + + + +CE+ S ++ ++ ++D
Sbjct: 249 VSSINDAC----------IDLQQSSKNSCEYIPKLHNTQSEEIVKKFSDLSFTKIHDIED 298
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L G + CPY+ R + ++ YQ LL ++ + +++ EAHN+
Sbjct: 299 LGKLGNKLKICPYYSVRKGIDVTEIIALPYQMLLQDSTRSALNLNIDDSIIIID-EAHNL 357
Query: 240 DNVCIEALSVSVRRQTLEGATRNLS-RINQEIERFKATDA------GRLRAEYNRLVEGL 292
+V SVS+ L T++L +N+ I+R + + +L + +
Sbjct: 358 LDVISSIYSVSITSNELSDITKSLKFYLNKFIKRLNSGNRINIMKLIKLCQVLEKFISSN 417
Query: 293 ALRGNLPIADAWLSNPALPSDILKEAVPG---NIRRAEHFLH---VLRRLVQYLRGRLET 346
+ G + D ++ SDI E G NI + E FL+ + ++ Y++ ++
Sbjct: 418 SKDGKIKHGDEIIT-----SDIF-EGTTGDLVNIHKIEQFLNKSKIAYKIESYMQKLNDS 471
Query: 347 ENVE-KEGPVSF-VASITAHAGIDQKTLRFCYERLH-SLMLTLEITDTDE-FLHIQTICD 402
E+++ + P+ F + K +F +++ + S+ + + D E F I
Sbjct: 472 ESIKNRSNPLLFKITKFLKCLTNPSKEGKFFWDKTNDSVSINYMLLDPSEIFRDIVKRAR 531
Query: 403 FATLVGTYTRGFSIIIEPFDER----MPHI-PDPVLQLSCHDASLAVKPVFDRFQSVVIT 457
L G +EP ++ P+I P+ + + SC
Sbjct: 532 CVLLCGG-------TMEPMNDYTNYLFPYIPPEQIKKFSC-------------------- 564
Query: 458 SGTLSP---IDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDP 514
G + P ++++P + N++ + SF+ S + M++
Sbjct: 565 -GHIIPQENLEVFP-IGNYNDI---SFEFSFDKRNNSKMIIE------------------ 601
Query: 515 GVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV 574
G ++ ++ PDGIV FF SY Y++ ++ W + I++ + + K +F E +D
Sbjct: 602 -----LGHAILNIIESTPDGIVIFFPSYKYLNVVMNVWRQNKIIESLTKVKAIFQEPEDS 656
Query: 575 VETTLALDNYRKACDCGR-GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ L++Y + A+ SV GK++EGI+F R VIM G+PF
Sbjct: 657 SKVEKVLNDYSSTNKSEKHSALLLSVVGGKMSEGINFSDELARGVIMIGLPF 708
>gi|7706541|ref|NP_057518.1| regulator of telomere elongation helicase 1 isoform 1 [Homo
sapiens]
gi|229462743|sp|Q9NZ71.2|RTEL1_HUMAN RecName: Full=Regulator of telomere elongation helicase 1; AltName:
Full=Novel helicase-like
gi|6969265|gb|AAF33687.1|AF217795_1 helicase-like protein NHL [Homo sapiens]
gi|119595644|gb|EAW75238.1| hCG22751, isoform CRA_a [Homo sapiens]
gi|119595645|gb|EAW75239.1| hCG22751, isoform CRA_a [Homo sapiens]
gi|119595647|gb|EAW75241.1| hCG22751, isoform CRA_a [Homo sapiens]
Length = 1219
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHLQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ KA G E++
Sbjct: 279 IDQVLEEQTKAAQQGEPHPEFS 300
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|224054204|ref|XP_002298143.1| predicted protein [Populus trichocarpa]
gi|222845401|gb|EEE82948.1| predicted protein [Populus trichocarpa]
Length = 749
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 11/207 (5%)
Query: 429 PDPVLQLSCHDASLAVKPVFDRF--QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT 486
P L C + +A++ F R +S+++TSGTLSP+D + + L + ++
Sbjct: 409 PSRTLSWWCFNPGIAMQE-FSRMGVRSIILTSGTLSPLDSFAQELKLDFPIRLENPHVIS 467
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
+ I V+ G +++ + R + G +V IVPDG++ FF SY +D
Sbjct: 468 SNQIWAGVVPAGPSGRSLNSSYRTRDSLEYKQELGNAIVNFARIVPDGLLVFFPSYYLLD 527
Query: 547 EIIATW------NDSGILKEIMQHKLVFIETQDVVETTLALDNY-RKACDCG-RGAVFFS 598
+ I+ W N + I + I +HK +E + LA+++Y K D GAVFF+
Sbjct: 528 QCISCWKNMSQANSTTIWERICKHKKPVVEPRQSSLFPLAIEDYLAKLKDTSTSGAVFFA 587
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPF 625
V RGKV+EG+DF H GR V++ G+PF
Sbjct: 588 VCRGKVSEGLDFADHAGRAVVITGMPF 614
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 123/278 (44%), Gaps = 57/278 (20%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--- 59
+K+ + V FP++ Y Q YM ++ ++L K + LLE PTGTGKT+ LL ++
Sbjct: 5 YKIRGIDVDFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKS 63
Query: 60 -------------------------VLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ 94
S+ N ++Y +RT ++ + + ELK +Y+
Sbjct: 64 LGGFSTGKIERNGRIAGGKLDIVPSSQSEDRNLPTIVYASRTHSQLRQVIQELKR-SSYR 122
Query: 95 TRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIET 154
+ + L SR+ LC++ V + R + + L +
Sbjct: 123 PK---------MVILGSREQLCIHEEV----------SLLRGKVQNNACHLICKTRGKRQ 163
Query: 155 CEFFENYEKAASAAVLPPGV----YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQ 210
C +Y + A P + ++DL G+ G CPY+++R + + +++ Y
Sbjct: 164 CT---HYSRVADYVKCNPHLGDEPVDIEDLVNIGRTFGPCPYYISRELHKVVDILFAPYN 220
Query: 211 YLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
YL+D ++ + S+++FDEAHN++++C +A S
Sbjct: 221 YLIDRGNRKSLAIDWDN-SILIFDEAHNLESLCADAAS 257
>gi|119595646|gb|EAW75240.1| hCG22751, isoform CRA_b [Homo sapiens]
gi|119595651|gb|EAW75245.1| hCG22751, isoform CRA_b [Homo sapiens]
Length = 1300
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHLQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ KA G E++
Sbjct: 279 IDQVLEEQTKAAQQGEPHPEFS 300
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|223996978|ref|XP_002288162.1| DNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220975270|gb|EED93598.1| DNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 839
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 151/629 (24%), Positives = 251/629 (39%), Gaps = 116/629 (18%)
Query: 62 SKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV 121
S+ +N + RT ++ + + EL+ H G K++A+G SR LC N V
Sbjct: 184 SEDDNVALIALGPRTHSQLSQFIGELR------RTHWGETVKVVALG--SRSLLCGNEDV 235
Query: 122 LAAENRDSVDAACRKRTASWVRALAAENPNIE----------------TCEFFENYEKAA 165
L A + ++ +R S + + + I+ +C + + E +
Sbjct: 236 LYASKTNKKNS---RRNESEITEMCLDMQKIKRDGKKKSDDGKGKKVSSCPYLASPEAVS 292
Query: 166 SAA----VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
+ A V P + +D GK C Y+ +R + A VVV Y LL P+ +
Sbjct: 293 TLAMHALVRPSDI---EDTANLGKASRVCSYYASRKALAAAEVVVLPYNTLLSPQARQSV 349
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRL 281
+ K +++V DEAHN+ S + +E A +S++ R+ AGR
Sbjct: 350 GLSI-KNALIVVDEAHNLPEALRNISSCQLSLPVMEAA---MSQLLAYTRRYSGRLAGR- 404
Query: 282 RAEYNRLVEGLALRGNLPIADAWLSNP----ALPSDILKEAVPGNIRRAEHFLHVLRRLV 337
N G +R L +L P + SD+ K+ +IR E V
Sbjct: 405 ----NLFYLG-QIRKVLLAMIKYLKRPPPASSHGSDVTKDE---SIRTKEMMAAV----- 451
Query: 338 QYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHS----LMLTLEITDTDE 393
L RL+ +NV + ++ + + QK L F + S T D E
Sbjct: 452 -DLMFRLKLDNVNLFALLRYLEK----SRLSQKLLGFVNHTVASSEENANNTANNNDQSE 506
Query: 394 FL--HIQTICDFATL---VGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVF 448
F+ H+ ++ T + T +R II+E L+ ++S KP
Sbjct: 507 FMSKHVSSLSIVETFFQRLTTTSREGKIIVEW-----------SLESDDEESSFTTKPPT 555
Query: 449 DRF--------QSVVITSGTLSPIDLYPRLLNFHPVVSRSFK-----------------M 483
RF +VV+ GTL P + L + VV +
Sbjct: 556 FRFLDNIVEEAHAVVLAGGTLRP---FSHLAREYDVVHNTSGSSSASPPSSLVQITQQLT 612
Query: 484 SLTRDCICP--MVLTRGSDQLPVSTKFDMR----SDPGVARNYGKLLVEMVSIVPDGIVC 537
+ T + P V+T P S K D R S + G++L+ M ++VP G V
Sbjct: 613 TFTCGHVIPPSNVVTACLSFGPTSHKLDFRHNSRSSNAMIDELGRVLLNMCNVVPSGFVV 672
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYR-KACDCGRGAVF 596
F SY+Y ++ W +G+L +I + K + E ++ + AL Y +A GA+
Sbjct: 673 FLPSYNYESQVFQRWRSTGMLAQIDKKKRIHREPKNSRDLETALARYSTEASSSKAGALL 732
Query: 597 FSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
FSV GK++EGI+F R V++ G+P+
Sbjct: 733 FSVMGGKMSEGINFANDMARCVLVVGLPY 761
>gi|119595650|gb|EAW75244.1| hCG22751, isoform CRA_e [Homo sapiens]
Length = 1400
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHLQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ KA G E++
Sbjct: 279 IDQVLEEQTKAAQQGEPHPEFS 300
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|374674404|dbj|BAA83040.3| KIAA1088 protein, partial [Homo sapiens]
Length = 1400
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHLQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ KA G E++
Sbjct: 279 IDQVLEEQTKAAQQGEPHPEFS 300
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|7012929|gb|AAF35243.1| helicase-like protein NHL [Homo sapiens]
Length = 1400
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHLQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ KA G E++
Sbjct: 279 IDQVLEEQTKAAQQGEPHPEFS 300
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|410212712|gb|JAA03575.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglodytes]
Length = 906
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAEHVVEFSCGHVIPPDNILPLVICSGIS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +V G+VCFF SY Y+ ++ A W G+L
Sbjct: 669 NQPLEFTFQKRELPQMMDEVGRILCNLCGVVSGGVVCFFPSYEYLRQVHAHWEKGGLLGR 728
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 729 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 789 LGRCVVMVGMPF 800
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 19/220 (8%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 278
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 279 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDIE 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 397
Query: 239 IDNVCIEALSVSVR-RQTLEGATRNLSRINQEIERFKATD 277
+ + SV V Q + ++ L + Q +R KA +
Sbjct: 398 LIDTITGMHSVEVSGSQLCQAHSQLLQYMEQYGKRLKAKN 437
>gi|149712588|ref|XP_001490646.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Equus
caballus]
Length = 906
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 96/192 (50%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL + VV S + D I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFREQLLACAGVDAERVVEFSCGHVIPPDNILPLVVCSGPS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCFF SY Y ++ A W+ SG+L
Sbjct: 669 NQQLEFTYQQRELPQMMTETGRILCNLCNVVPGGVVCFFPSYEYQRQVHAHWDKSGLLAR 728
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y K CG+ GA+ SV GK++EGI+F +
Sbjct: 729 LAVRKKIFQEPKRANQVEQVLLEYSKCIQCCGQMGSTMTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 789 LGRCVVMVGMPY 800
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 25/217 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G +++++G SR+NLCVN V +
Sbjct: 226 TKIYYCSRTHSQLSQ------FVHEVQKSPFGKDTRLVSLG--SRQNLCVNEDVRHLGSV 277
Query: 128 DSVDAAC---------RKRTASWVRALAAENPNIETCEFFENYEKAA--SAAVLPPGVYT 176
++ C RK A + TC F+ NYE+ VL V
Sbjct: 278 QLINDRCVEMQRNKHERKSEAEEEKPKKRRQEPRATCPFY-NYEQLQLLRDEVLVE-VKD 335
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
++ L GK+ CPY+ +R + A +VV YQ LL +Q + VVV DEA
Sbjct: 336 IEQLVTLGKEAHACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRLQGQ-VVVIDEA 394
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERF 273
HN+ + S V L A S++ Q +ER+
Sbjct: 395 HNLIDTITGIHSAEVSGSQLCQAH---SQLLQYMERY 428
>gi|148683832|gb|EDL15779.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a [Mus
musculus]
Length = 901
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 127/543 (23%), Positives = 218/543 (40%), Gaps = 56/543 (10%)
Query: 109 LSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAA 168
LSSR + CV+ V+ NR C + + + ++C F+ K ++
Sbjct: 4 LSSRDHSCVHPEVVGNFNRKE---KCME---------LLDGKHGKSCYFYHGVHKISNQQ 51
Query: 169 VLP-----PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISK 223
L + +++L + G++ CPY+ AR +++ A++V Y YLLD ++ +
Sbjct: 52 TLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDADIVFCPYNYLLDSQIRETMDI 111
Query: 224 EMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGR-- 280
++ K VV+ DEAHNI++ E+ S SV L A L S IN I R K+ + R
Sbjct: 112 KL-KGQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSLINGNI-RKKSHEPLRDV 169
Query: 281 -------LRAEYNRLVEGLALRGNLPIADAWLSNPALPS----DILKEAVPGNIRRAEHF 329
L LVE RG W N L + I P R H
Sbjct: 170 CYNLINWLETNSKHLVE----RGYESSCKIWSGNEMLLNLYRMGITTATFPVLQR---HL 222
Query: 330 LHVLRR--LVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLE 387
VL++ V + G+ E + P+ ++ G+ E S+ +
Sbjct: 223 SAVLQKEEKVTPIHGKEEAIQI----PIISASTQVVLKGLFMVLDYLFRENSSSISIVFP 278
Query: 388 ITDTDEF-LHIQTICDFATLVGTYTR-GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVK 445
D++ + IQ + + + + G + + I L C + ++A
Sbjct: 279 FRFADDYKVAIQQTYSWTNQIAIFDKTGVLAVPKNKKHSRQKIGVNALNFWCLNPAVAFS 338
Query: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
+ D+ +++V+TSGTLSP+ + L + ++ + + G +
Sbjct: 339 DINDKVRTIVLTSGTLSPLKSFSSELGVTFSIQLEANHVISNSQVWVGTVGSGPKGRNLC 398
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
F G LL+ + V GI+CF SY ++++ W +G+ + K
Sbjct: 399 ATFQHTETFEFQDEVGMLLLSVCQTVSQGILCFLPSYKLLEKLRERWIFTGLWHSLESVK 458
Query: 566 LVFIETQDVVETTLALDNYRKACDCGRGAVFFS---VARGKVAEGIDFDRHYGRLVIMFG 622
V E Q +T ++ + A+ F V RGKV+EG+DF R VI G
Sbjct: 459 TVIAEPQGGEKT-----DFDELLQVYYDAIKFKGEKVCRGKVSEGLDFSDDNARAVITVG 513
Query: 623 VPF 625
+PF
Sbjct: 514 IPF 516
>gi|410953370|ref|XP_003983344.1| PREDICTED: regulator of telomere elongation helicase 1 [Felis
catus]
Length = 1477
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 137/304 (45%), Gaps = 64/304 (21%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQEEYMSKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 SLITSYVLSKPENPV--------------------------KLIYCTRTVHEMEKTLAEL 87
I++ +++ V K+IY +RT ++ + ++EL
Sbjct: 65 DTISARKIAERAQGVLFVDHTLSWGAAASDGDSTACYSDVPKIIYASRTHSQLTQVISEL 124
Query: 88 KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAA 147
+ +Y+ R L SR+ LC++ V E+ CRK+ AS
Sbjct: 125 RST-SYRPR---------VCVLGSREQLCIHPEVKKQESNHMQIHLCRKKVAS------- 167
Query: 148 ENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVY 207
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 168 -----RSCHFYNNVEEKSLEQELTTSILDIEDLVKSGNKHKLCPYYLSRNLKQQADIIFM 222
Query: 208 SYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRIN 267
Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S + T L I+
Sbjct: 223 PYNYLLDAKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESASFDL---TPHDVASGLDAID 278
Query: 268 QEIE 271
Q +E
Sbjct: 279 QVLE 282
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+++++TSGTL+P+ + L V + + I ++ +G D +S+ FD R
Sbjct: 471 RTLILTSGTLAPVSSFALELQIPFPVCLENPHVIDKHQIWVGIVPKGPDGAQLSSAFDKR 530
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W +++ K +F+E
Sbjct: 531 FSDACLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLEFWRARDFARKLESLKPLFVEP 590
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + +D Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 591 RSKGGFSEVVDAYYTRVASPGSSGATFLAVCRGKASEGLDFADTNGRGVIVTGLPY 646
>gi|426372116|ref|XP_004052976.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein 8
[Gorilla gorilla gorilla]
Length = 1016
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 719 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 778
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +VP G+VCFF SY Y+ ++ A W +L
Sbjct: 779 NQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGSLLGR 838
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 839 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 898
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 899 LGRCVVMVGMPF 910
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 19/220 (8%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 337 TKIYYCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSLGSV 388
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 389 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDIE 448
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 449 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 507
Query: 239 IDNVCIEALSVSVR-RQTLEGATRNLSRINQEIERFKATD 277
+ + SV V Q + ++ L + Q +R KA +
Sbjct: 508 LIDTITGMHSVEVSGSQLCQAHSQLLQYMEQYGKRLKAKN 547
>gi|168269672|dbj|BAG09963.1| tumor necrosis factor receptor superfamily member 6B precursor
[synthetic construct]
Length = 1400
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHLQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ KA G E++
Sbjct: 279 IDQVLEEQTKAAHEGEPHPEFS 300
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|345317478|ref|XP_001517598.2| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
[Ornithorhynchus anatinus]
Length = 899
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 93/187 (49%), Gaps = 13/187 (6%)
Query: 452 QSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
++V+I GT+ P+ D +LL VV + + D I P+VL G P+
Sbjct: 614 RAVIIAGGTMQPVADFREQLLACAGVGAERVVEFACGHVIPPDNILPLVLCSGPSNQPLE 673
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
+ R P + G++L + ++VP G+VCFF SY Y ++ A W SG+L + K
Sbjct: 674 FTYQKRELPQMMDETGRILFNLCNVVPGGVVCFFPSYEYQRQVQARWEHSGLLARLGIKK 733
Query: 566 LVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRHYGRLV 618
VF E + + L +Y K C + GA+ SV GK++EGI+F GR V
Sbjct: 734 KVFQEPKKASQVEKVLADYSKCIQHCSQPGSAMTGALLLSVVGGKMSEGINFSDDLGRCV 793
Query: 619 IMFGVPF 625
+M G+P+
Sbjct: 794 VMVGMPY 800
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 41/239 (17%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G ++ ++G SR++LCVN V +
Sbjct: 213 TKIYYCSRTHSQL------AQFVHEVQRSPFGKETRLASLG--SRQSLCVNEDVRRLGSM 264
Query: 128 DSVDAACRKRTASWVRALAAENPNIE----------------------TCEFFENYEKAA 165
++ C + + A +NP E TC F+ +
Sbjct: 265 QLINDRCMELQRN---KQARKNPEEEEKEEQAEETGKARKKRKRESRATCPFYSYEQMQL 321
Query: 166 SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM 225
+ V ++ L A G++ CPY+ +R+ + A +VV YQ LL ++
Sbjct: 322 LRDKVLVEVKDIEQLVALGQESHACPYYGSRYAIPAAQLVVLPYQMLLHSATRRAAGIQL 381
Query: 226 QKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
Q + VV+ DEAHN+ + S V L + S++ Q +ER++ RL+A+
Sbjct: 382 Q-DQVVIIDEAHNLIDTITAIHSAEVNGAQL---CQAYSQLLQYLERYRK----RLKAK 432
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 6 EDVTVYFPYD-NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL----LSLITSYV 60
E V+FP+ YP Q S+M EL R L+A + E PTGTGK+++L LS + +
Sbjct: 7 EPGRVHFPFPFTPYPIQESFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDFE 66
Query: 61 LSKPENPVKLI 71
K + +L+
Sbjct: 67 TKKKQEEARLL 77
>gi|340052773|emb|CCC47058.1| putative helicase [Trypanosoma vivax Y486]
Length = 968
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 140/275 (50%), Gaps = 36/275 (13%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
+ V + FP+D YP Q YM + ALD + LLE PTGTGKT+ LL + +++ +
Sbjct: 6 IRGVEISFPFDP-YPAQVEYMQAVMDALDNAANALLESPTGTGKTLCLLCAVLAWLEKRQ 64
Query: 65 E-----------NPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRK 113
+++YC+RT ++ + ELK +T + +A +AI + SR+
Sbjct: 65 SISFSGGATGSPGVTRVVYCSRTHTQLSHVIRELK-----KTSY--SSAFSMAI-MGSRE 116
Query: 114 NLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE-KAASAAVLP- 171
++CV+S+VL ++ + A C E+ N C F+ ++ + A +L
Sbjct: 117 HMCVHSQVLRLQSVHAQQAMCNS---------LREDKN---CHFYRGFQSRLARNEMLSK 164
Query: 172 -PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESV 230
V+ ++DL A G + G+CPY+ R + + ++++ Y Y+ D + + ++ K+ V
Sbjct: 165 ESCVHDMEDLFAEGYKCGFCPYYWERELAKESSIIFLPYNYIFDSTLRRQLPFDL-KDCV 223
Query: 231 VVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
++ DEAHN+ +V + V+++ L A + SR
Sbjct: 224 LIVDEAHNLPSVLGSSFCVNLQPLELANAIHDCSR 258
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 10/204 (4%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
VL C D S +++ + S+++TSGTLSP+D + + H V S + +
Sbjct: 432 VLGYWCLDISPSLQTLVKSVHSLILTSGTLSPLDHFAAEIGIHFEVCLSGGHVIAPSQVA 491
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
+L +G ++ + RS G LV + P G++ FF SY ++ +
Sbjct: 492 GCILCKGPSGERLNGSYAFRSSLDYRIGLGMALVNISRNTPGGVLVFFPSYVALNAAVDL 551
Query: 552 W-------NDSGILKEIMQH-KLVFIETQDVVETTLALDNYRKACDCG--RGAVFFSVAR 601
W N++ + +++H K VF+E DV +T+ + ++++ D RGA+ +V R
Sbjct: 552 WRAGSGRTNETETIWAMLEHVKPVFVEPTDVRDTSTIVTSFQREVDAAPSRGAILLAVCR 611
Query: 602 GKVAEGIDFDRHYGRLVIMFGVPF 625
GKV+EGI+F ++GR V++ G+PF
Sbjct: 612 GKVSEGINFADNHGRCVLVAGIPF 635
>gi|426392489|ref|XP_004062582.1| PREDICTED: regulator of telomere elongation helicase 1 isoform 1
[Gorilla gorilla gorilla]
Length = 1220
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 141/322 (43%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L LS N K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDAIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHIQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ KA G E++
Sbjct: 279 IDQVLEEQTKAAQQGERHPEFS 300
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|410046333|ref|XP_003952169.1| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase
DDX12-like [Pan troglodytes]
Length = 920
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 598 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGIS 657
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +V G+VCFF SY Y+ ++ A W G+L
Sbjct: 658 NQPLEFTFQKRDLPQMMDEVGRILCNLCGVVSGGVVCFFPSYEYLRQVHAHWEKGGLLGR 717
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 718 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDN 777
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 778 LGRCVVMVGMPF 789
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 29/226 (12%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 220 TKIYYCSRTHSQLAQ------FVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVRSLGSV 271
Query: 128 DSVDAAC---------RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C +K+ A R C F+ + + V ++
Sbjct: 272 QLINDRCVDMQRSRHEKKKGAEXRR----RQEKQAACPFYNHEQMGLLRDEALAEVKDIE 327
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 328 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 386
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 387 LIDTITGMHSVEVSGSQLCQAH---SQLLQYMERY----GKRLKAK 425
>gi|300706292|ref|XP_002995425.1| hypothetical protein NCER_101677 [Nosema ceranae BRL01]
gi|239604524|gb|EEQ81754.1| hypothetical protein NCER_101677 [Nosema ceranae BRL01]
Length = 600
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 129/638 (20%), Positives = 249/638 (39%), Gaps = 156/638 (24%)
Query: 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPV------- 68
++Y Q ++ + K+ +D + PTGTGKT++LL + Y+ E+ V
Sbjct: 5 DLYDIQKKFITDCKKVIDNSSVGIFSSPTGTGKTLSLLLSVLEYITELEEDDVLLENLVE 64
Query: 69 -----KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLA 123
K+ +C+RT ++++ L E K L K ++ L SRK C+N +
Sbjct: 65 NFSRTKIYFCSRTHSQLKQCLHEFKNLE----------VKTNSVILGSRKIYCINREIDN 114
Query: 124 AENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAF 183
E+ + V+ C+ + C++++ + G+Y ++ L
Sbjct: 115 KEDINKVNQKCKDLIKQ------------DNCKYYK-------QDMFVSGIYDIEQLVKE 155
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G++ CPYF ++ + +V Y L + + I+ + V+V DEAHNI +
Sbjct: 156 GRKHKACPYFFSKKYFKKCELVFLPYNLLFNEENRKNININLINSIVIV-DEAHNIIDTV 214
Query: 244 IEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADA 303
++++ + +E + +N+ + L L
Sbjct: 215 NNFNTITIHYEIME----------------------KYFVAFNKYKKLLNLNS------- 245
Query: 304 WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITA 363
+I+ + L +L++LV+Y + +S + + A
Sbjct: 246 -----------------KSIKIVVNMLDILQKLVKY------------KNSISKIMEVNA 276
Query: 364 HAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTIC--------DFATLVGTYTRGFS 415
F Y+ S +L + D +E L IC + + + S
Sbjct: 277 ----------FLYD---SNLLKYNMLDIEENLKQYNICAKIEAYGKNLQNKIFDIIKFLS 323
Query: 416 IIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHP 475
+++ + D L++ DA L +P FD QS+V GT+ PI + N
Sbjct: 324 LLVNSDKNCKIEVADKYLKIFPIDAKLYFEPFFD-CQSIVFAGGTMEPIQPLQDIFNAKN 382
Query: 476 VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD-- 533
V S+ S+ ++ ++ + ++ K R+ K+ +E++ I+
Sbjct: 383 VEYFSYD-SIIKNFRGFIICEFDHKRFELTEK---------TRDVEKIQMEIILIIKKIA 432
Query: 534 ------GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKA 587
G+V F S Y++ + DS + F E D+ E +Y KA
Sbjct: 433 CTVKKGGVVVFLPSKYYLEFLRKLLKDS---------ENYFFENFDIFE------DYAKA 477
Query: 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ V F+V GK++EG++F+ R++++FGVPF
Sbjct: 478 TKTNK-CVLFAVMGGKLSEGVNFNDDLCRVLVIFGVPF 514
>gi|85001257|ref|XP_955347.1| chl1 protein [Theileria annulata strain Ankara]
gi|65303493|emb|CAI75871.1| chl1 protein, putative [Theileria annulata]
Length = 829
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 143/583 (24%), Positives = 247/583 (42%), Gaps = 108/583 (18%)
Query: 65 ENP--VKLIYCTRTVHEMEKTLAELKLLH--NYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
ENP ++I C+RT ++ + + E K L+ N R L+IG S R ++C+N+
Sbjct: 161 ENPNRTQIIICSRTFSQLNQYVKEFKRLNKINKNVR--------LSIG-SGRSHVCINNM 211
Query: 121 VLA-AENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
+ + ++ + ++ CR+ CE+ N P L+D
Sbjct: 212 IKSKCKSPEELNDECRR----------------SKCEYRSNTTDLIEITTCYP--LDLED 253
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L + GK+ G CPY+ + A++V+ Y ++ + + + K+++++FDE HN+
Sbjct: 254 LVSLGKESGCCPYYSNLKTLTNADIVLAPYITVISESLRESLGLRI-KDNILIFDEGHNL 312
Query: 240 DNVCIEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+ E+ S + L+ L S +N+ F + R+ +E +LV N+
Sbjct: 313 TDAITESRSCKLTLVGLKELLHQLRSYVNKYKTNFNTIVSDRV-SEITKLV-------NV 364
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRL-----VQYLRGRLETE-NVEKE 352
I + S + I V ++ + F +L L ++LRG E E +++K+
Sbjct: 365 IIENVSKSESSQNLKITSFTVLYSLEDIK-FHEILNFLSSTDFCRHLRGWAEREYHIKKK 423
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
S V+ T I + F++ CD + T+
Sbjct: 424 KDESLVS------------------------YTSMIYNLKNFIYSLLYCDSNDQI-IITK 458
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRL-- 470
++IE F PV + +SVVI SGTLSPI+ + L
Sbjct: 459 SEDVVIEIF---------PVAS-----GIYVLISYIGESRSVVIMSGTLSPIEEFLSLAP 504
Query: 471 ------LNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVAR-NYGKL 523
++ P V + T + I + RG + + FD + N+
Sbjct: 505 SKTEVFIHKSPPVFPLNRFLATINHIFVCLDERGDELV-----FDYSRRENLEELNFLCN 559
Query: 524 LVEMVS-IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALD 582
L+E++S IVP GIVCFF SYSY+D + S K+++ K VF E +++
Sbjct: 560 LLELLSEIVPGGIVCFFSSYSYLDLFYNYFIKSSSNKKVLTRKDVFKEQKNIN----IFP 615
Query: 583 NYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
Y K+C RGAV +V G +EG+DF RLV++ G+P+
Sbjct: 616 EYSKSC-FERGAVLLAVFGGNQSEGVDFSDDLARLVLLVGLPY 657
>gi|426392493|ref|XP_004062584.1| PREDICTED: regulator of telomere elongation helicase 1 isoform 3
[Gorilla gorilla gorilla]
Length = 1301
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 141/322 (43%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L LS N K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDAIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHIQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ KA G E++
Sbjct: 279 IDQVLEEQTKAAQQGERHPEFS 300
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|428672406|gb|EKX73320.1| conserved hypothetical protein [Babesia equi]
Length = 822
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 138/606 (22%), Positives = 247/606 (40%), Gaps = 84/606 (13%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
+++I C+RT ++ + ++E R L K+ I + R +C+N +V
Sbjct: 158 LQVIICSRTFSQLNQYVSEF--------RRLNSKYKLGII--AGRFQVCINEKVRRCSTA 207
Query: 128 DSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQ 187
+ ++ CR+ +C + ++ ++ + + P ++++ GK
Sbjct: 208 EELNEECRR----------------TSCAYRKDVKELRESILAYP--LDIEEVVQIGKDM 249
Query: 188 GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEAL 247
CPY+ V ++++ Y +L+ V + ++ K +++VFDE HN+ + EA
Sbjct: 250 YACPYYAGVKNVAHMDIILVPYVSILNDSVRESLGIDL-KGNIIVFDEGHNLSDAIEEAQ 308
Query: 248 SVSVRRQTLEGATRN----LSRINQEIERFKATDAGRLRAEYNRLVEGLALR-----GNL 298
SV + + L+ L + I++ T+ RL E +EG A +
Sbjct: 309 SVRISLKELQDLNMECKGYLKKFASTIQK-DETEVLRLMIEMLNTLEGHANKQKTVDNTH 367
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGR--------LETENVE 350
D + S+ S I+ ++ + + +E+F + + L GR LE N
Sbjct: 368 NNNDEFASSKEPDSLIVNSSLSKHEKTSENFSNPRQGLGGNFNGRGNVRSDSNLENLNTT 427
Query: 351 KEGPVSFV-----ASITAHAGID-------QKTLRFCYERL-HSLMLTLEITDTDEFLHI 397
SF+ I H +D + R ERL H++ L+I++ + +
Sbjct: 428 CMTISSFIIEFGLQDIKFHTILDFLASSDFTRRFRGYVERLKHAVEKNLDISNKKDNMKT 487
Query: 398 QTICDFATLVG--------------TYTR-GFSIIIEPFDERMPHIPDPVLQLSCHDASL 442
+ TL TR G SI IE F +
Sbjct: 488 VSTLAIYTLRAFIQALLSSNSNDRVIITRTGCSIEIEIFSLFAGKFLSSYSHTFTDENFH 547
Query: 443 AVKPVFDRFQSVVITSGTLSPIDLYPRLL--NFHPVVSRSFKM-SLTRDCICPMVLTRGS 499
+ SV++ SGTLSPI+ + RL+ N ++ S + L R ++ R +
Sbjct: 548 KTASLVSEAHSVLVMSGTLSPIEEFLRLVPPNMSALIHTSPPVFPLNR--FFASIIDRDN 605
Query: 500 DQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILK 559
D + + R+ KLL + SIVP+GIVCFF SY ++ + + +S
Sbjct: 606 DGNELKFDYTSRTRDMELTYLCKLLDLISSIVPNGIVCFFSSYKFLKQFRSFLENSRFRI 665
Query: 560 EIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVI 619
IM K +F E Q D Y K RGA+ F V G+ +EG++F RLV+
Sbjct: 666 SIMSRKRLFFEEQG---HGSVFDEYSKTA-LERGAILFGVFGGRQSEGVNFSDGLARLVL 721
Query: 620 MFGVPF 625
+ G+P+
Sbjct: 722 LVGLPY 727
>gi|182705254|sp|Q92771.3|DDX12_HUMAN RecName: Full=Putative ATP-dependent RNA helicase DDX12; AltName:
Full=CHL1-related protein 2; Short=hCHLR2; AltName:
Full=DEAD/H box protein 12
Length = 950
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPIDLYPRLL------NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ + + L VV S + D I P+V+ G
Sbjct: 628 VVKECRAVVIAGGTMQPVSNFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGVS 687
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +V G+VCFF SY Y+ ++ A W G+L
Sbjct: 688 NQPLEFTFQKRDLPQMMDEVGRILCNLCGVVSGGVVCFFPSYEYLRQVHAHWEKGGLLGR 747
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC R GA+ SV GK++EGI+F +
Sbjct: 748 LAARKKIFQEPKSAHQVEQVLLAYSRCLQACGQERGPVTGALLLSVVGGKMSEGINFSDN 807
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 808 LGRCVVMVGMPF 819
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ +C+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 246 TKIYHCSRTHSQLAQ------FVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVRSLGSV 297
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 298 QLINNRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDME 357
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 358 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 416
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 417 LIDTTTSMHSVEVSGSQLCQAH---SQLLQYMERY----GKRLKAK 455
>gi|194387848|dbj|BAG61337.1| unnamed protein product [Homo sapiens]
Length = 1004
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTG+T+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGRTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 ELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHLQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 FMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLDV 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ KA G E++
Sbjct: 279 IDQVLEEQTKAAQQGEPHPEFS 300
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 533 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 592
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 593 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 648
>gi|407849947|gb|EKG04513.1| helicase, putative [Trypanosoma cruzi]
Length = 951
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 137/276 (49%), Gaps = 38/276 (13%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK- 63
+ DV V FP+ N YP Q YM + AL+ + + LLE PTGTGKT+ LL +++ +
Sbjct: 6 IADVGVSFPF-NPYPAQVEYMRAVIDALNGRCNALLESPTGTGKTLCLLCSALAWLEKRR 64
Query: 64 ----------PENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIG-LSSR 112
++IYC+RT ++ + + ELK +TR+ I ++ L SR
Sbjct: 65 GMTQQRYQIEGAGRTRVIYCSRTHAQLRQVIRELK-----RTRY----GDIFSMSLLGSR 115
Query: 113 KNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKA---ASAAV 169
+++CVNS+VL R TA +++ + C F+ ++ +A
Sbjct: 116 EHMCVNSQVL------------RLPTAQAQQSMCNTLREEKKCRFYRGFQARNDHNTAVK 163
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
V+ ++DL + G++ G+CPY+ R + A++V Y Y+ D + + + K S
Sbjct: 164 DGKWVHDMEDLVSDGRKCGYCPYYSEREEAKEADIVFLPYNYVFDLSIRKQLPFNL-KGS 222
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
+++ DEAHN+ +V + ++++ L A + SR
Sbjct: 223 ILIVDEAHNLPSVLGASSCMNLQPLELTNAIHDCSR 258
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 16/202 (7%)
Query: 437 CHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLT 496
C D S AVK + S+++TSGTLSP++ + L VS + ++ + VL
Sbjct: 425 CLDTSCAVKTLVAGLNSLLLTSGTLSPLEHFAAELGIEFGVSLKGAHVIQQNQVLGCVLC 484
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS- 555
+G ++ + R+ G LV + P G++ FF SY ++ I W
Sbjct: 485 KGPSGEKLNGAYAYRNSVDYRVGLGMSLVNISRNTPGGVLVFFPSYVALNAAIELWRAGS 544
Query: 556 ----------GILKEIMQHKLVFIETQDVVETTLALDNYRKACDCG--RGAVFFSVARGK 603
G+L+++ K VF+E + + + +++ D RGA+ +V RGK
Sbjct: 545 GRPGESLTVWGMLEDL---KPVFVEPVEASDLQTIVSRFQREVDSAPSRGAILLAVCRGK 601
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
++EGIDF ++GR V++ G+PF
Sbjct: 602 ISEGIDFADNHGRCVVVAGIPF 623
>gi|195470104|ref|XP_002099973.1| GE16425 [Drosophila yakuba]
gi|229891631|sp|B4PZB4.1|RTEL1_DROYA RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|194187497|gb|EDX01081.1| GE16425 [Drosophila yakuba]
Length = 985
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 138/312 (44%), Gaps = 63/312 (20%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENP 67
+ V+FP++ YP Q +YM ++ + L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YPVQRAYMEKVIQCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQSEH 67
Query: 68 V---------------------------------------KLIYCTRTVHEMEKTLAELK 88
K+IY +RT ++ + + ELK
Sbjct: 68 QQQMVKMEKADFTGLGGGAAGGDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAMRELK 127
Query: 89 LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAE 148
+T + A + ++ L SR LC++ V+ + + C+ R S
Sbjct: 128 -----RTAY----ANMRSVVLGSRDQLCIHPEVMREQGNSNKTNMCKLRVHS-------- 170
Query: 149 NPNIETCEFFENYEKAASAAVL-PPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVY 207
+TC F E L P + ++DL G++ CPYF +R +V A++
Sbjct: 171 ----KTCSFQMRVESRKDHPDLRGPSIMDIEDLVKVGQRLKICPYFASRELVPQADITFM 226
Query: 208 SYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRIN 267
Y YLLDPK E+ ++V+ DEAHNI+ +C E+ SV ++ + A +++ I
Sbjct: 227 PYNYLLDPKARKANKIEL-GNTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIM 285
Query: 268 QEIERFKATDAG 279
Q ++ D G
Sbjct: 286 QVFASGESQDMG 297
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 108/197 (54%), Gaps = 5/197 (2%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 453 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 510
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + + R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 511 QVYVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKC 570
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GAVF +V RGKV+EG+
Sbjct: 571 VDAWQASGLWADISVKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGL 630
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+PF
Sbjct: 631 DFADRNGRAVIITGLPF 647
>gi|77682790|gb|ABB00675.1| EG:33C11.2 [Drosophila teissieri]
Length = 577
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 143/591 (24%), Positives = 232/591 (39%), Gaps = 117/591 (19%)
Query: 104 ILAIGLSSRKNLCVNSRV-----LAAENRDSVDAACRKR-----TASWVRALAAENPNIE 153
+ I L SR+ LC N +V + N +D A +K S + A A +
Sbjct: 6 VRCISLGSRQQLCGNPQVRRLKHVGLMNERCLDMATKKSRPNPSKKSRLSAEANSRCPFK 65
Query: 154 TCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLL 213
E+ A + L +++L G G C Y+ +R V+ A +V+ YQ LL
Sbjct: 66 AAPLVESLRDLALSEPL-----DIEELANEGAACGGCSYYASRSAVEHAQLVLLPYQLLL 120
Query: 214 DPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGA-------------- 259
+ + K S+V+ DEAHN+ + + + RQ LE A
Sbjct: 121 QKSARNQLGISL-KGSIVIVDEAHNLLDSVAQLHGSEINRQQLERAKVQISGYKEHFQKR 179
Query: 260 --TRNLSRINQEI----------ERFKATDAGRL-------------------------- 281
T+NL +INQ I +R K T A
Sbjct: 180 FSTKNLLKINQIIFIVRRLLKILDRGKETQANSCSMMRTYDLTAEGDFFNIDLCELLDFC 239
Query: 282 -RAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYL 340
R+ + R V+G A R + PS+ P + R+ +L+RL
Sbjct: 240 ARSRFARKVQGHADR---------MEREPRPSE---NQPPVSTARS----LILQRLAS-- 281
Query: 341 RGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTI 400
E + EK PV A + + K F ++ E+T + I+ +
Sbjct: 282 ----EQKQKEKPKPVKRKAEDS-----EDKAEEFQEQQKPPKKPVQEVTPSP----IRPL 328
Query: 401 CDFATLVGTYTRGFSIIIEPFDERMPHIP-DPVLQLSCHDASLAVKPVFDRFQSVVITSG 459
F + + I+++P + +I DP Q + + +++VI G
Sbjct: 329 LAFLETLTSNAEDGRILLDPVGGTLKYILLDPAEQFA---------DIVAEARAIVIAGG 379
Query: 460 TLSPI-DLYPRLLNF--HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGV 516
T+ P +L +L +V R + + D + P V++ G P+S +F R+ +
Sbjct: 380 TMQPTQELKEQLFTSCQDRLVERFYNHVVEDDAVLPFVISNGPSGAPLSFQFAHRASAEM 439
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVE 576
+ LL + +VP G+VCF SY Y+D++ SG L+ I K VF E E
Sbjct: 440 LQELSMLLRNLCQVVPGGVVCFLPSYEYLDKVYKYLEQSGTLEAIRSRKSVFREVSGSAE 499
Query: 577 TTLALDNYRKACD--CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
LDNY A GA+ SV GK++EG++F GR V++ G+P+
Sbjct: 500 QL--LDNYALAIKKPASGGALLLSVVGGKLSEGLNFADDLGRAVLVVGLPY 548
>gi|344278065|ref|XP_003410817.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Loxodonta africana]
Length = 904
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+++ G
Sbjct: 607 VVKECRAVVIAGGTMQPVSDFREQLLACAGVGAERVVEFSCGHVIPPDNILPLIICSGPS 666
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCFF SY Y+ ++ A W SG+L
Sbjct: 667 NQQLEFTYQKRELPQMMDETGRILCNLCNVVPGGVVCFFPSYEYLRQVYARWEQSGLLVR 726
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y K CG+ GA+ SV GK++EGI+F +
Sbjct: 727 LAVKKKIFQEPKRANQVEQVLMEYSKCIKCCGQAAGTMTGALLLSVVGGKMSEGINFSDN 786
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 787 LGRCVVMVGMPY 798
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 33/230 (14%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G +++++G SR+NLCVN V +
Sbjct: 224 TKIYYCSRTHSQLAQ------FVHEVQKSPFGKDTRLVSLG--SRQNLCVNEDVKNLGSV 275
Query: 128 DSVDAACRKRTASWVRALAA---------ENPNIETCEFFENYEKAA--SAAVLPPGVYT 176
V+ C + S + C F+ NYE+ VL V
Sbjct: 276 QLVNDRCMEMQRSKHEKKSEAEEEKPKRRRQEGQAACPFY-NYEQMQLLRDEVLVE-VKD 333
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
++ L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEA
Sbjct: 334 IEQLVAMGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGVRLQGQ-VVIIDEA 392
Query: 237 HNIDNVCIEALSVSVRRQTLEGAT--RNLSRINQEIERFKATDAGRLRAE 284
HN+ I+A++ S+ L G+ + S++ Q +ER++ RL+A+
Sbjct: 393 HNL----IDAIT-SIHSTELSGSQLCQAHSQLLQYMERYRK----RLKAK 433
>gi|195448955|ref|XP_002071885.1| GK24923 [Drosophila willistoni]
gi|229891630|sp|B4NDG5.1|RTEL1_DROWI RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|194167970|gb|EDW82871.1| GK24923 [Drosophila willistoni]
Length = 998
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 107/197 (54%), Gaps = 5/197 (2%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
V+ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 459 VINFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 516
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + F R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 517 QVYVKIIGTGPDRQQLISNFKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKC 576
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GA F +V RGKV+EG+
Sbjct: 577 VDAWQTSGLWADIAAKKPIFLEPRGKDQFTTTMEEFYQAIRDSKGACFMAVCRGKVSEGL 636
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 637 DFADRNGRAVIITGLPY 653
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 131/301 (43%), Gaps = 65/301 (21%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK---- 63
+ V+FP++ Y Q ++M ++ L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YEVQRAFMEKVIICLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQSEQ 67
Query: 64 -----------------PENPV--------------------KLIYCTRTVHEMEKTLAE 86
P V K+IY +RT ++ + + E
Sbjct: 68 QKQIRKLQDAANNTKVGPTGIVPGEAAELALTVGKANNWGVPKVIYASRTHSQLTQAMRE 127
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
LK A + ++ L SR LC++ V+ + + C+ R S
Sbjct: 128 LKR---------SAYAGMRSVVLGSRDQLCIHPEVMREQGNSNKVNMCKMRVHS------ 172
Query: 147 AENPNIETCEFFENYE-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+TC F E K P + ++DL G++ CPYF ++ +V A++
Sbjct: 173 ------KTCSFQLRVESKKDHPDFRGPSIMDIEDLVKVGQKLKMCPYFASKELVNDADIT 226
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLDP +A +K ++V+ DEAHNI+ +C E+ SV ++ + A +++
Sbjct: 227 FMPYNYLLDP-MARKANKIELSNTIVILDEAHNIEKICEESASVQIKSSDVAVAIEDVTH 285
Query: 266 I 266
I
Sbjct: 286 I 286
>gi|348532245|ref|XP_003453617.1| PREDICTED: Fanconi anemia group J protein [Oreochromis niloticus]
Length = 1236
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 141/622 (22%), Positives = 225/622 (36%), Gaps = 141/622 (22%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + ELK +T + G IL SSR + CVN V+ NR+
Sbjct: 260 KIFFGTRTHKQITQITHELK-----RTVYSGVPMTIL----SSRDHTCVNPDVVPHTNRN 310
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-----GVYTLQDLRAF 183
C+ E + +C ++ ++ L + ++DL
Sbjct: 311 E---RCKD---------LLEAKDGRSCRYYHGVQRMRDQNTLQHVHGLRAAWDIEDLVTL 358
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ C YF AR ++Q A ++ Y YLLDP + E+ ID
Sbjct: 359 GKRLRSCSYFAARELMQSAWIIFCPYNYLLDP----------------MIRESMEID--- 399
Query: 244 IEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADA 303
LEG L E D R A Y + L +
Sbjct: 400 ------------LEGQILVLD------EAHNIEDCARESASYTLDYKSLLMS-------- 433
Query: 304 WLSNPALPSDILKEAVPGNIRRAEH-----FLHVLRRLVQYLRGRLETENVEKEGPV--- 355
D L V NIRR++H F + L +Q + + E G V
Sbjct: 434 --------RDELDSMVNNNIRRSKHELLRGFCYSLINWIQESQSLMSERGYETAGKVWSG 485
Query: 356 SFVASITAHAGIDQKTLRFCYERLHSLMLTLE----ITDTDEFLHIQTI----------- 400
+ I GI T + L +++ E + ++ + I TI
Sbjct: 486 KEIVGIFHTLGITADTFNILKQNLAAVLEKEEHAGVVNGREDVVQIPTISPPTATVLKNL 545
Query: 401 -----------CDFA-----TLVGTYT------------RGFSIIIEPFDERMP-HIPDP 431
C FA L +Y +GF I+ P R +
Sbjct: 546 FMVLDFLFRDSCRFADDYRVALQKSYAWTNQVPPDVPNAQGF--IVRPRGRRQTVRVKTE 603
Query: 432 VLQLS--CHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDC 489
VL LS C + ++A + S+V+TSGTLSP+D + L + + +
Sbjct: 604 VLTLSFWCLNPAVAFSDLSGSVHSIVLTSGTLSPMDSFSSELGVKFSIQLEANHVINKSQ 663
Query: 490 ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
+ + G + F G LL+ + ++ G++CF SY +D++
Sbjct: 664 VWVGTVGAGPQGRKLCATFQNAETYAFQDEVGGLLLHVCQVMAKGVLCFLPSYKMLDKLR 723
Query: 550 ATWNDSGILKEIMQHKLVFIETQ------DVVETTLALDNYRKACDCGRGAVFFSVARGK 603
W +G+ ++ Q K V E + D E + K C+ GA+ +V RGK
Sbjct: 724 DRWTKTGLWDKLEQQKTVITEPRGGGGKGDFDELLHTYYSAIKYCEEKDGALLIAVCRGK 783
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
V+EG+DF R V+ G+PF
Sbjct: 784 VSEGLDFTDDNARAVVAVGIPF 805
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V ++FP YP Q + M + R L+ +CLLE PTG+GK++ALL + +
Sbjct: 8 YTIGGVKIHFPC-KAYPSQLAMMNLIVRGLNTGQYCLLESPTGSGKSLALLCSALGWQHA 66
Query: 63 KPENPVKL 70
+ P KL
Sbjct: 67 QFGKPAKL 74
>gi|378756742|gb|EHY66766.1| hypothetical protein NERG_00406 [Nematocida sp. 1 ERTm2]
Length = 690
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 125/254 (49%), Gaps = 22/254 (8%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
+++ T+ Y+ +Y Q + + LD ++E PTGTGKT+++L + ++V P
Sbjct: 6 IKNYTINTEYE-LYEPQRKSIETILTCLDNGESGMIESPTGTGKTLSILEAVVAWVNKNP 64
Query: 65 EN--PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
E ++ TRT+ + + +A LK + N P +LA SR++LC+NS V
Sbjct: 65 EKLEGGQIYVTTRTIKQASQLIAHLKKMKN------APMMNLLA----SRRHLCLNSEVS 114
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
+ + DS K R PN + E+ + PGV++++DL +
Sbjct: 115 KSNDIDSACKKKNKDPNKDSRCKYYRTPNEK--------EQERDRNISLPGVFSIEDLVS 166
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G + CP++ R + A ++ Y Y++ +++ + ++ SV++ DEAHNID+V
Sbjct: 167 AGGECNSCPFYYTRERQEKATIIFSPYNYIVSERISAALKIDLTG-SVLIVDEAHNIDDV 225
Query: 243 CIEALSVSVRRQTL 256
C SV ++R L
Sbjct: 226 CRSTGSVDIKRADL 239
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 21/203 (10%)
Query: 430 DPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDC 489
D + L H A++ P++++ +SV++ SGTL P + L+ SFK L+ D
Sbjct: 370 DKISFLLLHAAAI-FNPIYEKARSVILLSGTLEP---FQELVTELTTKKNSFKHFLSADH 425
Query: 490 ICPMVLTRGS-----DQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD--GIVCFFVSY 542
I + + +P+ + P +V++ + G++CF SY
Sbjct: 426 IISQSQLYTAEVSQYNSVPILGTYQGSKHPDYISTLVSSIVDIAHSLEKVGGVLCFVPSY 485
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARG 602
+ + + + +++ +H +F+E + + L+ YR+ C G+ +F V RG
Sbjct: 486 NML---------TLLERKLEKHVKLFVENKSNSKFEYELEQYRRYCKMGK-CIFLCVFRG 535
Query: 603 KVAEGIDFDRHYGRLVIMFGVPF 625
K +EGI+F H R VI+ G+P+
Sbjct: 536 KASEGINFRDHESRAVILVGIPY 558
>gi|71413416|ref|XP_808847.1| helicase [Trypanosoma cruzi strain CL Brener]
gi|70873137|gb|EAN86996.1| helicase, putative [Trypanosoma cruzi]
Length = 951
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 135/274 (49%), Gaps = 38/274 (13%)
Query: 7 DVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK--- 63
DV V FP+ N YP Q YM + AL + + LLE PTGTGKT+ LL +++ +
Sbjct: 8 DVGVSFPF-NPYPAQVEYMRAVIDALKGRCNALLESPTGTGKTLCLLCSALAWLEKRHGM 66
Query: 64 --------PENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIG-LSSRKN 114
++IYC+RT ++ + ELK +TR+ I ++ L SR++
Sbjct: 67 TQQRYQIEGAGRTRVIYCSRTHAQLSHVIRELK-----RTRY----GDIFSMSLLGSREH 117
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE-KAASAAVLPPG 173
+CVNS+VL R TA +++ + C F+ ++ + + G
Sbjct: 118 MCVNSQVL------------RLSTAQAQQSMCNTLREEKNCRFYRGFQARNGHNTAVKDG 165
Query: 174 --VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVV 231
V+ ++DL + G++ G+CPY+ R + A++V Y Y+ D + + + K S++
Sbjct: 166 KWVHDMEDLVSDGRKCGYCPYYSEREEAKEADIVFLPYNYVFDLSIRKQLPFNL-KGSIL 224
Query: 232 VFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
+ DEAHN+ +V + ++++ L A + SR
Sbjct: 225 IVDEAHNLPSVLGASSCMNLQPLELTNAIHDCSR 258
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 16/202 (7%)
Query: 437 CHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLT 496
C D S AVK + S+++TSGTLSP++ + L VS + ++ + VL
Sbjct: 425 CLDTSCAVKTIVAGLNSLLLTSGTLSPLEHFAAELGIEFGVSLKGAHVIQQNQVLGCVLC 484
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS- 555
+G ++ + R+ G LV + P G++ FF SY ++ I W
Sbjct: 485 KGPSGEKLNGAYAYRNSVDYRVGLGMSLVNISRNTPGGVLVFFPSYVALNAAIDLWRAGS 544
Query: 556 ----------GILKEIMQHKLVFIETQDVVETTLALDNYRKACDCG--RGAVFFSVARGK 603
G+L+++ K VF+E + + + +++ D RGA+ +V RGK
Sbjct: 545 GRPGESLTVWGMLEDL---KPVFVEPVEASDLQTIVSRFQREVDSAPSRGAILLAVCRGK 601
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
++EGIDF ++GR V++ G+PF
Sbjct: 602 ISEGIDFADNHGRCVVVAGIPF 623
>gi|301780626|ref|XP_002925736.1| PREDICTED: LOW QUALITY PROTEIN: regulator of telomere elongation
helicase 1-like [Ailuropoda melanoleuca]
Length = 1303
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 136/305 (44%), Gaps = 65/305 (21%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQEEYMSKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 -------------------SLITSYVLSKPENPV--------KLIYCTRTVHEMEKTLAE 86
++S+ + + + K+IY +RT ++ + ++E
Sbjct: 65 DAVSARKIAERAQGELFLDRTLSSWGVGTSDGDITGCYADIPKIIYASRTHSQLTQVISE 124
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
L+ +Y+ R L SR+ LC++ V E+ CRK+ AS
Sbjct: 125 LRNT-SYRPR---------VCVLGSREQLCIHPEVKKQESNHMQIHLCRKKVAS------ 168
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 169 ------RSCHFYNNVEEKSLEQELATPILDIEDLVRSGNKHKLCPYYLSRNLKQQADIIF 222
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
Y YLLD K S ++ K ++V+FDEAHN++ +C E S + L L I
Sbjct: 223 MPYNYLLDAKSRRAHSIDL-KGTIVIFDEAHNVEKMCEETASFDLTPHDL---ASGLDAI 278
Query: 267 NQEIE 271
+Q +E
Sbjct: 279 DQVLE 283
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
++++TSGTL+P+ + + V + R + ++ +G D +S+ FD R
Sbjct: 472 HTIILTSGTLAPLASFALEMQIPFPVCLENPHVIDRQQMWVGIVPKGPDGAQLSSAFDKR 531
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W +++ K VF+E
Sbjct: 532 FSDACLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLEFWRAHDFARKLEALKPVFVEP 591
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + +D Y R A GAVF +V RGK +EG+DF GR VI+ G+P+
Sbjct: 592 RSKGGFSEVVDAYYTRAASPGSSGAVFLAVCRGKASEGLDFADMNGRGVIVTGLPY 647
>gi|363728123|ref|XP_416375.3| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Gallus
gallus]
Length = 941
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLLNFHPV-----VSRSFKMSLTRDCICPMVLTRGSD 500
V ++V+I GT+ P+ D +LL++ V V S + + I P++L G
Sbjct: 647 VVKECRAVIIAGGTMQPVADFREQLLSYAGVDPARIVEFSCGHVIPPENILPIILCSGPS 706
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCFF SY Y ++ A W +G+L
Sbjct: 707 NQQLEFTYQTRDLPQMMDETGRILCNLCNVVPGGVVCFFPSYDYEKQVYAHWEKTGLLTR 766
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y K CG+ GA+ SV GK++EGI+F
Sbjct: 767 LATKKKIFQEPKKANQVEQVLAEYAKCIKRCGQAGGQMTGALLLSVVGGKMSEGINFSDD 826
Query: 614 YGRLVIMFGVPF 625
GR VIM G+P+
Sbjct: 827 LGRCVIMVGMPY 838
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 92/208 (44%), Gaps = 50/208 (24%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV--LAA- 124
K+ YC+RT ++ + +H Q G +++++G SR+NLCVN V L A
Sbjct: 261 TKIYYCSRTHSQLSQ------FVHEVQKSPFGKDTRLVSLG--SRQNLCVNEEVRRLGAL 312
Query: 125 ---------------ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAA--SA 167
E + + +KR S C F+ +YE+
Sbjct: 313 QLINDRCTEMQKNKHEKKSDAEVEGKKRRVSRT-----------VCPFY-SYEQMQFLRD 360
Query: 168 AVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP---KVAGIISKE 224
VL V ++ L GK+ CPY+ +R+ + A +VV YQ LL AGII
Sbjct: 361 EVLVE-VKDIEQLVTLGKETKACPYYGSRYAIPAAQLVVLPYQMLLHEATRSAAGIIL-- 417
Query: 225 MQKESVVVFDEAHN-IDNV-CIEALSVS 250
K+ VV+ DEAHN ID + CI + VS
Sbjct: 418 --KDQVVIIDEAHNLIDTITCIYSAEVS 443
>gi|76155584|gb|AAX26876.2| SJCHGC05649 protein [Schistosoma japonicum]
Length = 267
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 96/174 (55%), Gaps = 2/174 (1%)
Query: 454 VVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSD 513
+++TSGTL P + LN ++ + D + V+ RG D + ++ + +R
Sbjct: 58 IILTSGTLYPFEPLEAELNLKFPITLRNPHVINADQLNLSVIPRGPDGVKLNGTYSVRET 117
Query: 514 PGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD 573
P + G LLV++ +VP G++ FF SY++M + I W +S +++ + K +FIE ++
Sbjct: 118 PAYRNSLGLLLVQLAQVVPAGLLIFFPSYAFMSQCIEFWKNSDTYEKLSRFKQIFIEPRE 177
Query: 574 VVETTLALDNYRK-AC-DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + YR AC + GA+ FSV RG+V+EG+D + GR V + G+P+
Sbjct: 178 KNQFNKIFNEYRSIACSESSVGAILFSVMRGRVSEGLDLADNTGRGVAILGLPY 231
>gi|156379412|ref|XP_001631451.1| predicted protein [Nematostella vectensis]
gi|156218492|gb|EDO39388.1| predicted protein [Nematostella vectensis]
Length = 1082
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 7/194 (3%)
Query: 437 CHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVL 495
C A+K + + SV++TSGTLSP++ + + + + + + V+
Sbjct: 458 CFSPGHAMKDLMSQGVSSVILTSGTLSPLNSFTAEMQIPFPIRLENPHVIEKHQMMVAVV 517
Query: 496 TRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS 555
T+ D +++ ++ RS PG G + +P+G++ FF SY M++ + W ++
Sbjct: 518 TKAPDGATLNSSYEFRSTPGYMTGLGNTIANFARTIPNGLLVFFPSYPVMNKCLEHWQNT 577
Query: 556 GILKEIMQHKLVFIETQ---DVVETTLALDNYRKACDCG-RGAVFFSVARGKVAEGIDFD 611
GI + Q+K +F E + D V+T D Y K D GA FF+V RGKV+EG+DF
Sbjct: 578 GIWARLSQYKPMFAEPRGKGDFVQTM--EDFYAKINDPSLNGATFFAVCRGKVSEGLDFS 635
Query: 612 RHYGRLVIMFGVPF 625
GR V++ G+PF
Sbjct: 636 DINGRAVVITGLPF 649
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 126/288 (43%), Gaps = 72/288 (25%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----SLITSYVL-- 61
V V FP+ Y Q +YM ++ L + + +LE PTGTGKT+ LL + SYV
Sbjct: 7 VDVDFPF-KPYDCQVAYMEKVIECLQTRKNAVLESPTGTGKTLCLLCATLAWRQSYVANL 65
Query: 62 -----------------------------------------SKPENPVKLIYCTRTVHEM 80
S E P K+IY +RT ++
Sbjct: 66 QLQQRGLCAAKEEEDGFQKSLGNKLAEAASGTWDDSCSNKGSNFEIP-KIIYASRTHSQL 124
Query: 81 EKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTAS 140
+ + ELK Y+ R + IG SR+ LC+NS VL ++ + CR + +
Sbjct: 125 SQAVQELKATV-YRPR-------VSIIG--SREQLCINSDVLKQDSNSAKVHMCRAKVTA 174
Query: 141 WVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQ 200
TC F+ N E S + ++DL G++ CPY++AR +
Sbjct: 175 ------------RTCHFYNNLEGNKSNPAFTTEILDIEDLVRLGQKHKVCPYYMARELKT 222
Query: 201 FANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
A+++ Y YLLDPK + ++ S+VVFDEAHN++ VC E +S
Sbjct: 223 SADIIFMPYNYLLDPKSRKAHNLDISG-SIVVFDEAHNLEKVCEETVS 269
>gi|321469304|gb|EFX80285.1| hypothetical protein DAPPUDRAFT_128417 [Daphnia pulex]
Length = 892
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 125/283 (44%), Gaps = 58/283 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK- 63
L +V + FP+ Y Q +M + L + LLE PTGTGKT+ LL ++ ++
Sbjct: 6 LNNVPIEFPF-QPYDVQEKFMERVIECLQKGVNGLLESPTGTGKTLCLLCSTLGWLATRK 64
Query: 64 ---------------------------------PENPV-KLIYCTRTVHEMEKTLAELKL 89
P V K+IY +RT ++ + ++ELK
Sbjct: 65 AQIQSGQLAGDMGVDIKNQLSNATGLGWGDAATPGAGVPKIIYASRTHSQLSQVISELK- 123
Query: 90 LHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAEN 149
R++ K+ +G SR LC++ V N C RT +
Sbjct: 124 --RSSYRYM----KVCILG--SRDQLCIHPEVSKETNNAVKLHMCHARTTT--------- 166
Query: 150 PNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
TC F N + V ++DL GK+ CPYF+ + + + A+++ Y
Sbjct: 167 ---RTCYFHTNLDAKKEEPDFKMDVLDIEDLVTLGKKHSACPYFMTKEIRKGADIIFMPY 223
Query: 210 QYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVR 252
YLLDPKV I + E+Q ++V+FDEAHN++ +C E+ S+ +R
Sbjct: 224 NYLLDPKVRKIHNIELQG-NIVIFDEAHNVEKMCEESSSIELR 265
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 2/174 (1%)
Query: 454 VVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSD 513
+++TSGTLSP++ + L V+ ++ + V+T G D + + + RS+
Sbjct: 471 LILTSGTLSPLNSFAAELQVPFPVTLENPHIISSSQVLVGVVTHGPDGTQLDSSYKNRSN 530
Query: 514 PGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD 573
++ G+ + +VPDG++ FF SY M W SG+ I Q K +F+E
Sbjct: 531 SQYVQSLGRTIRSTAQVVPDGLLVFFPSYPVMKACQEAWQLSGLWDAINQVKPIFVEPNS 590
Query: 574 VVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
A+ + A + +GA F +V RGKV+EG+DF GR VI+ G+P+
Sbjct: 591 KEGFQEAMTGFYNAVASEDRKGACFMAVCRGKVSEGLDFCDGNGRAVIITGLPY 644
>gi|449664763|ref|XP_002167953.2| PREDICTED: regulator of telomere elongation helicase 1-like [Hydra
magnipapillata]
Length = 1225
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 21/206 (10%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPID------LYP---RLLNFHPVVSRSF 481
L C + L +K + D+ +S+++TSGTLSP+ L P L N H + +
Sbjct: 478 TLSYWCFNPGLTMKELRDQGVRSIILTSGTLSPLASLKAEFLIPFDVELENGHVIEKQQ- 536
Query: 482 KMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVS 541
+ +L +G D +++ + RS + G +V + I+PDG++ FF S
Sbjct: 537 --------VFVGILPQGPDGKKLNSSYQSRSTSEYQVSLGNTIVNLSRIIPDGLLVFFPS 588
Query: 542 YSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDN-YRKACDCG-RGAVFFSV 599
Y MD ++A W + GI I +K +++E + + +D Y K D +GAVFF+V
Sbjct: 589 YPVMDMVLAKWQECGIWNRIATNKGLYVEGRGKLGFNETIDEFYLKIHDPALKGAVFFAV 648
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPF 625
RGKV+EG+DF GR V++ G+PF
Sbjct: 649 CRGKVSEGLDFSDANGRGVVITGLPF 674
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 129/278 (46%), Gaps = 66/278 (23%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL-------------- 53
V + FP++ Y Q YM ++ L + LLE PTGTGKT+ LL
Sbjct: 9 VNIDFPFEP-YECQIKYMEKVITCLQKGLNGLLESPTGTGKTLCLLCATLGWRETYVARL 67
Query: 54 ---------------SLITSYVLSKPENPV------------KLIYCTRTVHEMEKTLAE 86
SL ++ + E K+IY +RT ++ + + E
Sbjct: 68 QLERVGKLQQNAFSDSLGSTLGEASGEKNAGGSWERGFLDVPKIIYASRTHSQITQCVNE 127
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
LK TR++ KI +G SR+ +C+NS V+ EN + CR + A
Sbjct: 128 LK-----NTRYV---PKICVLG--SREQMCINSEVMREENNNGKVHMCRIKVAG------ 171
Query: 147 AENPNIETCEFFENYE-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+ C F+ N E ++ +PPG+ ++DL + G ++ +CPY++AR + + A+++
Sbjct: 172 ------KQCFFYNNLEERSEDKDKVPPGMLDIEDLVSIGTEKKFCPYYMARELRKEADLL 225
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
Y Y+LD K + ++ ++V+ DEAHN+++ C
Sbjct: 226 FMPYNYVLDFKARNVHGVDLT-NTIVLLDEAHNLESHC 262
>gi|71660707|ref|XP_822069.1| helicase [Trypanosoma cruzi strain CL Brener]
gi|70887462|gb|EAO00218.1| helicase, putative [Trypanosoma cruzi]
Length = 951
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 135/274 (49%), Gaps = 38/274 (13%)
Query: 7 DVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK--- 63
DV V FP+ N YP Q YM + AL + + LLE PTGTGKT+ LL +++ +
Sbjct: 8 DVGVSFPF-NPYPAQVEYMRAVIDALKGRCNALLESPTGTGKTLCLLCSALAWLEKRNGM 66
Query: 64 --------PENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIG-LSSRKN 114
++IYC+RT ++ + + ELK +TR+ I ++ L SR++
Sbjct: 67 TQQRYQIEGAGRTRVIYCSRTHAQLSQVIRELK-----RTRY----GDIFSMSLLGSREH 117
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKA---ASAAVLP 171
+CVNS+VL R TA +++ + C F+ ++ +A
Sbjct: 118 MCVNSQVL------------RLPTAQAQQSMCNTLREEKNCRFYRGFQARNDHNTAVKDG 165
Query: 172 PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVV 231
V+ ++DL + G++ G+CPY+ R + A++V Y Y+ D + + + K S++
Sbjct: 166 KWVHDMEDLVSDGRKCGYCPYYSEREEAKEADIVFLPYNYVFDLSIRKQLPFNL-KGSIL 224
Query: 232 VFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
+ DEAHN+ +V + ++++ L A + SR
Sbjct: 225 IVDEAHNLPSVLGASSCMNLQPLELTNAIHDCSR 258
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 16/202 (7%)
Query: 437 CHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLT 496
C D S AVK + S+++TSGTLSP++ + L VS + ++ + VL
Sbjct: 425 CLDTSCAVKTLVAGLNSLLLTSGTLSPLEHFAAELGIEFGVSLKGAHVIQQNQVLGCVLC 484
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS- 555
+G ++ + R+ G LV + P G++ FF SY ++ I W
Sbjct: 485 KGPSGEKLNGAYAYRNSVDYRVGLGMSLVNISRNTPGGVLVFFPSYVALNAAIDLWRAGS 544
Query: 556 ----------GILKEIMQHKLVFIETQDVVETTLALDNYRKACDCG--RGAVFFSVARGK 603
G+L+++ K VF+E + + + +++ D RGA+ +V RGK
Sbjct: 545 GRPGESLTVWGMLEDL---KPVFVEPVEASDLRTIVSRFQREVDSAPSRGAILLAVCRGK 601
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
++EGIDF ++GR V++ G+PF
Sbjct: 602 ISEGIDFADNHGRCVVVAGIPF 623
>gi|390352857|ref|XP_001196422.2| PREDICTED: regulator of telomere elongation helicase 1-like
[Strongylocentrotus purpuratus]
Length = 402
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 98/176 (55%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P++ + L+ + + + + V+T+G D +++ + R
Sbjct: 10 RSIILTSGTLAPLNSFKSELSIDFPIQLENPHVIDKHQMVVGVMTKGPDGTVLNSSYQTR 69
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ G +V +VP+G++ FF SY M+ I W +SG+ I Q+K +FIE
Sbjct: 70 FKKEYVLSLGNAIVNFARMVPNGLLVFFPSYPVMNHAIEIWQESGVSNRITQYKEMFIEP 129
Query: 572 QDVVETTLALDN-YRKACDCG-RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + A+++ Y + D GA FF+V RGKV+EG+DF + GR V++ G+PF
Sbjct: 130 RGKRDFKEAMESFYERVRDPTLNGAAFFAVCRGKVSEGLDFADNNGRAVVITGLPF 185
>gi|195396523|ref|XP_002056881.1| GJ16649 [Drosophila virilis]
gi|229891629|sp|B4M891.1|RTEL1_DROVI RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|194146648|gb|EDW62367.1| GJ16649 [Drosophila virilis]
Length = 1005
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 106/197 (53%), Gaps = 5/197 (2%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + +SV++TSGTL+P L P + V++ + + R
Sbjct: 453 IINFWCFNPGFGMEQLLNAHVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDRS 510
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + + R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 511 QVYVKIIGTGPDREQLISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQC 570
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GA F +V RGKV+EG+
Sbjct: 571 VDAWQASGLWADISCRKPIFLEPRGKDQFTSTMEEFYQAIRDSKGACFMAVCRGKVSEGL 630
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+PF
Sbjct: 631 DFADRNGRAVIITGLPF 647
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 137/311 (44%), Gaps = 62/311 (19%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE-- 65
+ V+FP++ Y Q +YM ++ L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YEVQRAYMEKVIMCLRDGTNGVLESPTGTGKTLSLLCASLAWIRTRQSEQ 67
Query: 66 --------------------------NPV----------KLIYCTRTVHEMEKTLAELKL 89
N V K+IY +RT ++ + + ELK
Sbjct: 68 QQYMQKLQLDQQKQATGGAGAGVADLNAVMGKANNWGVPKVIYASRTHSQLSQAMRELK- 126
Query: 90 LHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAEN 149
+T + A + ++ L SR LC++ V+ + + C+ +
Sbjct: 127 ----RTAY----ANMKSVVLGSRDQLCIHPDVMREQGNSNKVNMCKLKV----------- 167
Query: 150 PNIETCEFFENYE-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYS 208
+ +TC F E K P + ++DL G++ CPYF ++ +V A++
Sbjct: 168 -HAKTCSFQLRVESKKDHPDFRGPSIMDIEDLVKVGQRLKMCPYFASKELVNGADITFMP 226
Query: 209 YQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQ 268
Y YLLDPK E+ ++V+ DEAHNI+ +C E+ SV +R + A +++ I +
Sbjct: 227 YNYLLDPKARKANKIELSN-TIVILDEAHNIEKICEESASVQIRSSDVAMAIEDITHIMK 285
Query: 269 EIERFKATDAG 279
A D G
Sbjct: 286 IFTSGDAQDTG 296
>gi|126340221|ref|XP_001373024.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
[Monodelphis domestica]
Length = 902
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 13/200 (6%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICP 492
+ S+ V ++V+I GT+ P+ D +LL VV S + D I P
Sbjct: 602 NPSVHFAQVVKECRAVIIAGGTMQPVADFREQLLECAGVGTERVVEFSCGHVIPPDNILP 661
Query: 493 MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW 552
+VL G P+ + R P + G++L + ++VP G+VCFF SY Y+ ++ A W
Sbjct: 662 IVLCSGPSNQPLEFIYQKRDLPQLMDEIGRILCNLCNVVPGGVVCFFPSYDYLHKVQAHW 721
Query: 553 NDSGILKEIMQHKLVFIETQDVVETTLALDNYRKA---CDCGR----GAVFFSVARGKVA 605
SG+L + K +F E + L Y K C R GA+ SV GK++
Sbjct: 722 AQSGLLTRLTVKKKIFQEPSRANQVEQVLTEYSKCIKRCSQVRGVMTGALLLSVVGGKMS 781
Query: 606 EGIDFDRHYGRLVIMFGVPF 625
EGI+F GR V+M G+P+
Sbjct: 782 EGINFSDDLGRCVVMVGMPY 801
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 25/218 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G +++++G SR+NLCVN V +
Sbjct: 225 TKIYYCSRTHSQL------TQFVHEVQKSPFGKETRLISLG--SRQNLCVNEEVKRLGSV 276
Query: 128 DSVDAAC---------RKRTASWVRALAAENPNIETCEFFENYEKAA--SAAVLPPGVYT 176
++ C +K+ +A + N +C F+ NYE+ VL V
Sbjct: 277 HLINDRCLEMQKNKHGKKKNKEEEKAKKRKLENRMSCPFY-NYEQMQFLRDEVLME-VKD 334
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
++ L GK+ CPY+ +R + A +VV YQ LL ++Q + VV+ DEA
Sbjct: 335 IEQLVVLGKEARACPYYGSRFAIPSAQLVVLPYQMLLHAATRQAAGIKLQGQ-VVIIDEA 393
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
HN+ + S V L A S+++Q +ER++
Sbjct: 394 HNLIDTITSIHSAEVSGLQLCQAH---SQLSQYMERYR 428
>gi|407929782|gb|EKG22592.1| Helicase-like DEXD box c2 type [Macrophomina phaseolina MS6]
Length = 816
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 140/622 (22%), Positives = 240/622 (38%), Gaps = 139/622 (22%)
Query: 66 NPVKLIYCTRTVHEMEKTLAELKLLH---------NYQTR-------HLGPAAKILAIGL 109
+ +K+ YC+RT ++ + EL+ + Q R H + L
Sbjct: 135 DELKVFYCSRTHSQLSQFAGELRRVKMPPAISSSDGQQMRSGQQDDAHTEITENFKHLTL 194
Query: 110 SSRKNLCVNSRVLAAENRDSVDAACR--KRTASWVRALAAENPNIETCEFFENYEKAASA 167
SRKNLC+N +V + V+ C ++ + P ET ++ A A
Sbjct: 195 GSRKNLCINPKVQKLGSAPLVNEKCLDLQKPGTAADRKCPYLPTKETEPIVNDFRDHALA 254
Query: 168 AVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQK 227
+ ++DL GK+ G CPY+ +R V+ + +V Y LL + M K
Sbjct: 255 -----DIRDIEDLGKIGKKLGVCPYYASRAAVKPSEIVTLPYPLLLQKTAREALDINM-K 308
Query: 228 ESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR---AE 284
VV+ DEAHN+ + SVSV +L R+ ++ ++RF+ G+ R A+
Sbjct: 309 GHVVIIDEAHNLMDAITGIYSVSV---SLSQLLRSRGQLTTYLQRFRNRLKGKNRVYLAQ 365
Query: 285 YNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL 344
RLV+ L++YL+ +
Sbjct: 366 TVRLVDS--------------------------------------------LIRYLQS-I 380
Query: 345 ETENVEKEGPVSFVASITAHAGIDQ----KTLRFCYERLHSLMLTLEITDTDE------- 393
++ E+EG V + + A G+DQ K LR+ E + + + T+E
Sbjct: 381 DSNTGEEEGIVQ-IGDLMAGKGVDQINLYKLLRYLDESRLARKVDGYVLHTEEQEKIKQS 439
Query: 394 --------------FLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHD 439
+HIQ+ F L+ G DE + L+ D
Sbjct: 440 TSAMSGEPRSTMPVLMHIQSF--FYALLNPSVEG-RFFYAKNDEEL----GLCLKYMLLD 492
Query: 440 ASLAVKPVFDRFQSVVITSGTLSPIDLYPR-LLNFHP---VVSRSFKMSLTRDCICPMVL 495
+ + + + ++V++ GT+SP+ Y LL++ P +V+ S + + +
Sbjct: 493 PTHHFRDIVEDARAVILAGGTMSPMSDYSEHLLSYLPPSRIVTVSCGHVIPPSNLLAWPV 552
Query: 496 TRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND- 554
T G P F+ R+ + G L+ +S +PDG+V FF SY+Y+D + W
Sbjct: 553 TTGPSGAPFDFTFEKRNTEATILDLGSALLSFISSIPDGVVVFFPSYAYLDRCMEAWQRL 612
Query: 555 -----SG---ILKEIMQHKLVFIETQDV----------------VETTLALDNYRKACDC 590
SG + + K +F E+++ V T L Y A
Sbjct: 613 PSPRASGAKTLYDALRLVKPIFHESKNKATRMEKTKTAPPEQINVTTDSVLSAYSTAVAT 672
Query: 591 --GRGAVFFSVARGKVAEGIDF 610
GRGA+ +V G ++EGI+F
Sbjct: 673 GNGRGALLLAVIGGSLSEGINF 694
>gi|428183991|gb|EKX52847.1| hypothetical protein GUITHDRAFT_39398, partial [Guillardia theta
CCMP2712]
Length = 719
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 3/192 (1%)
Query: 437 CHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVL 495
C A + ++ + + +++V+ SGTLSP+ + + V + ++ + I VL
Sbjct: 422 CFSAGVTMRDILQQGVRNIVLASGTLSPMSSWSIEMEMKFEVVLENEHVISDEQIFAAVL 481
Query: 496 TRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS 555
RG +++ + + + + + G ++V IVPDG++ FF SYS + I W +
Sbjct: 482 RRGPRGTVLNSSYRNKDNKEMIHDLGNVIVNTCRIVPDGLLVFFPSYSALTNTIQEWQNV 541
Query: 556 GILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAEGIDFDRH 613
GI I +HK VF+E ++ + Y + D GA+ +V RGK++EGIDF
Sbjct: 542 GIWDRIARHKHVFVEPRESANFKATVTAYTEQVDKQGSVGAILMAVCRGKMSEGIDFADR 601
Query: 614 YGRLVIMFGVPF 625
+GR VI+ G+PF
Sbjct: 602 HGRAVIITGLPF 613
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 124/272 (45%), Gaps = 55/272 (20%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSY------- 59
V V FP+ Y Q + L AL A G H LLE PTGTGKT+ LL + +
Sbjct: 4 VRVEFPF-RPYGSQVRLLEALIDALSAPGRHALLESPTGTGKTLCLLCGVLGWKNSSKVS 62
Query: 60 ---------------VLSKPENP--VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA 102
+ P +P +L+Y +RT ++ + + EL+ +Y+ R
Sbjct: 63 SQSSLPPELASLPPSMHPLPSSPGSSRLVYMSRTHGQLTQVVRELRA-SSYKPR------ 115
Query: 103 KILAIGLSSRKNLCVNSRVLAAENRDSV-DAACRKRTASWVRALAAENPNIETCEFFENY 161
+A+ L SR+ LC++ V ++ R S +AAC K + + C ++ N
Sbjct: 116 --MAV-LGSRQQLCIHPEV--SKLRGSAQNAACSKLVGA------------QACGYYRNV 158
Query: 162 --EKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAG 219
K V+ + ++DL G CPY+L+R + A VV Y YL DP
Sbjct: 159 MDHKHERKEVVEE-LMDIEDLCKHGTTHKVCPYYLSRDLSSDAEVVFMPYNYLTDPASRK 217
Query: 220 IISKEMQKESVVVFDEAHNIDNVCIEALSVSV 251
+ + K+S+VV DEAHN++ +C +A S +
Sbjct: 218 SL-LHLWKDSIVVIDEAHNMETICSDAASFDI 248
>gi|296417607|ref|XP_002838444.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634383|emb|CAZ82635.1| unnamed protein product [Tuber melanosporum]
Length = 807
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 104/210 (49%), Gaps = 14/210 (6%)
Query: 430 DPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR-LLNFHP---VVSRSFKMSL 485
D L+ D + + + + ++V++ GT+ P++ Y L + P + + S +
Sbjct: 499 DTCLRYMLLDPAHHFQEIVEEARAVILAGGTMEPMNDYTNHLFPYLPKEKIRTLSCGHVI 558
Query: 486 TRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYM 545
++ + + +T+G F+ R P + G+ +V + ++P G+VCFF SY+Y+
Sbjct: 559 PKENLTALPVTKGPGGREFEFTFEKRMQPAMIEELGRAIVNLCQVIPHGVVCFFPSYAYL 618
Query: 546 DEIIATWNDS----------GILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAV 595
+ +++ W + + + K VF E+ D L Y +A D G+G +
Sbjct: 619 EFVVSQWRKKPTPASNTAAKSLWERLEDRKTVFRESSDGSSVEEVLREYAQAIDSGKGGL 678
Query: 596 FFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
SV GK++EGI+F+ + GR +IM G+PF
Sbjct: 679 LLSVVGGKMSEGINFNDNLGRGIIMVGLPF 708
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 70 LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA----KILAIGLSSRKNLCVNSRVLAAE 125
+ YC+RT ++ + + EL+ + + G + ++ + L SRKNLC+N +V
Sbjct: 164 IFYCSRTHSQLTQFINELRRVKFPPSSPGGEGSALEEEVKHLSLGSRKNLCINPKVTKLG 223
Query: 126 NRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP----PGVYTLQDLR 181
N +++ C R+ A+E CEF + + + ++DL
Sbjct: 224 NPTAINERC----LELQRSGASE---ASRCEFLPGRDDQVAVRDFRDHTLAKIRDIEDLA 276
Query: 182 AFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
+ G++ G CPY+ +R ++ + +V Y LL + + K +V+ DEAHN+ N
Sbjct: 277 SLGRKMGICPYYASRPTIKPSEIVTLPYPLLLQKSAREALDLSL-KGHIVIVDEAHNLIN 335
Query: 242 VCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGR 280
S++V +L R+ S+++ + RFK G+
Sbjct: 336 AISSIYSITV---SLAQLQRSKSQLDIYLARFKNRLKGK 371
>gi|281208566|gb|EFA82742.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
Length = 997
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 104/196 (53%), Gaps = 3/196 (1%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDCI 490
V + + +A K + + +SV++TSGTLSP+ + L P+ + + +
Sbjct: 684 VFGIWSMNPRVAFKSISENTRSVILTSGTLSPLSSFASELGAPFPITAELGNLEDITKRV 743
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARN-YGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
L G++ + F SD V ++ G +++ + ++PDG++ FF SY +MD++I
Sbjct: 744 WIGTLGFGANNTKLDATFK-SSDMLVFQDALGNAILKHIELIPDGVLVFFPSYFFMDKMI 802
Query: 550 ATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609
W +G+ I + K +F E + + L++Y KA RG + FS+ RGKV+EGI+
Sbjct: 803 LRWKKTGVYDLIDRIKPIFTEPKFAKDFQPVLNDYNKAVQSKRGGLLFSIYRGKVSEGIN 862
Query: 610 FDRHYGRLVIMFGVPF 625
F + R VI+ G+P+
Sbjct: 863 FSDQFARGVIIIGIPY 878
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 29/191 (15%)
Query: 70 LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDS 129
+ +C+RT ++++ EL+ Y+ R + L SR CVNS++ E S
Sbjct: 322 IFFCSRTHSQIKQLTDELRKTP-YRPR---------MVVLGSRDQYCVNSKL---EGLYS 368
Query: 130 VDAACRKRTASWVRALAAENPNIETCEFF---ENYEKAASAAVLPPGVYTLQDLRAFGKQ 186
C+K + C F + Y A + P V+ ++D R GK+
Sbjct: 369 KKERCKKMVKD------------KECIFHRQSKTYNLATQFSGAPHQVWDIEDFRVAGKE 416
Query: 187 QGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEA 246
CPYF ++ MV AN++ Y Y++D + K+ S+V+FDEAHNI++ + A
Sbjct: 417 TRECPYFASKSMVPTANLIFCPYNYIIDMSIRSHF-KDKFTNSIVIFDEAHNIEDALMSA 475
Query: 247 LSVSVRRQTLE 257
S + R+ L+
Sbjct: 476 ASFDIVREDLQ 486
>gi|350399366|ref|XP_003485501.1| PREDICTED: probable ATP-dependent RNA helicase DDX11-like [Bombus
impatiens]
Length = 858
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 117/595 (19%), Positives = 248/595 (41%), Gaps = 68/595 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK-ILAIGLSSRKNLCVNSRVLAAEN 126
+K+ +C+RT ++ + + EL+ P +K + I L+SR+N C+N V ++
Sbjct: 191 IKIFFCSRTHSQLSQFIGELRK---------SPYSKNVSVITLTSRQNYCINKNVKKLKH 241
Query: 127 RDSVDAAC----RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
+ ++ C RK+T + +C F + L + ++++
Sbjct: 242 LNLINECCLQLQRKKTTAKDEKDLKRKKMTSSCPFVPGNQDLLIRESLMQ-IRDIEEIVQ 300
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G+ C Y+ +R V + +++ Y +L K I S K ++++ DEAHN+
Sbjct: 301 KGENLKTCAYYASRKAVSYGQLILVPYNTILH-KNTRISSGINLKGNILIIDEAHNL--- 356
Query: 243 CIEALSVSVRRQTLEGATRNL----SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+EA+ ++ + G RNL S+++Q RF+ + + +L LR +
Sbjct: 357 -LEAIE-NMHSVIITG--RNLLHCYSQLSQYQNRFQTLFSAKNILSLTQL--SFCLRKLI 410
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHV-------LRRLVQYLRGRLETENVEK 351
+ A + + P D++ + + E F + + L+++++ ++
Sbjct: 411 TVLGATIKSN--PDDVINIEASPKLYKIEEFAIMTNIDTVNMFELLKFIKNSRLNHKLQ- 467
Query: 352 EGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQ-----------TI 400
F+ + I + C + + + T+ D IQ TI
Sbjct: 468 ----GFIEQYDTNLKIHNHNTKTCGVKQFLNSIKTKSTEFDTITDIQLDEDRSNNPMMTI 523
Query: 401 CDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGT 460
F + + I I P P + +++ + + + ++V++ GT
Sbjct: 524 ISFLECLRSNCSDGRIFIIP----GPTVGQSIIKFLLLNPAAHFHDIIRDARAVILAGGT 579
Query: 461 LSPIDLYPRLL------NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDP 514
++P++ + L + +V+ S + + I + T G + F R +
Sbjct: 580 MAPMNEFTDQLFIAAGASSERIVTYSCDHVIPEENIVCSITTHGPTGIEFEFNFQNRENT 639
Query: 515 GVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV 574
+ G+ L+ + +I+P GI+ F SY++ + I +SGI+K++ K + E +
Sbjct: 640 KLLDELGRALLNLCNIIPAGIIVFLPSYNFEELIYKHLENSGIVKKLSLKKHILREPKSA 699
Query: 575 VETTLALDNY----RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ L Y + + G++ FSV GK++EG++F GR VI+ G+P+
Sbjct: 700 SQVHEILKEYSLHVKNPKNSQNGSLLFSVVGGKLSEGLNFSDDLGRCVIVVGMPY 754
>gi|397477198|ref|XP_003809965.1| PREDICTED: regulator of telomere elongation helicase 1 isoform 1
[Pan paniscus]
Length = 1090
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 149/338 (44%), Gaps = 75/338 (22%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY----- 59
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL ++
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 60 --------------------VLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGEVFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRH----------------LGPAAKILAIGLSSRKNLCVNSRVLAAENRDS 129
EL+ +Y++R L P + + L SR+ LC++ V E+
Sbjct: 125 ELRNT-SYRSRCRATLWVLETAPPRPTVLSPTRPKVCV-LGSREQLCIHPEVKKQESNHL 182
Query: 130 VDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGW 189
+CRK+ AS +C F+ N E+ + L + ++DL G +
Sbjct: 183 QIHSCRKKVAS------------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRV 230
Query: 190 CPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSV 249
CPY+L+R++ Q A+++ Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S
Sbjct: 231 CPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASF 289
Query: 250 SVRRQTLEGATRNLSRINQEI-ERFKATDAGRLRAEYN 286
+ L L I+Q + E+ KA G E++
Sbjct: 290 DLTPHDL---ASGLDVIDQVLEEQTKAAQQGEPHPEFS 324
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 497 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 556
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 557 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 616
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 617 RSKGGFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 672
>gi|345792101|ref|XP_543872.3| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Canis
lupus familiaris]
Length = 905
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+++ G
Sbjct: 608 VVKECRAVVIAGGTMQPVSDFREQLLACAGVEAERVVEFSCGHVIPPDNILPLIICSGPS 667
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCFF SY Y ++ A W+ SG+L
Sbjct: 668 SQQLEFTYQKRELPQMMDETGRILCNLCTVVPGGVVCFFPSYEYQRQVYAHWDKSGLLAR 727
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y + CG+ GA+ SV GK++EGI+F
Sbjct: 728 LAVRKKIFQEPKRANQVEQVLMEYSRCIKCCGQAGGTVTGALLLSVVGGKMSEGINFSDD 787
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 788 LGRCVVMVGMPY 799
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 29/227 (12%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G +++++G SR+NLCVN V +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVQRSPFGKDTRLVSLG--SRQNLCVNEDVKTLGSV 278
Query: 128 DSVDAACR--KRTASWVRALAAENP------NIETCEFFENYEKAA--SAAVLPPGVYTL 177
++ C +R+ RA E P + C F+ NYE+ VL GV +
Sbjct: 279 QLINDRCMEMQRSKHENRA-EEEKPKRRRQEHQAACPFY-NYEQLQLLRDQVLV-GVKDI 335
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+ L A GK+ CPY+ +R + A +VV YQ LL +Q + VVV DEAH
Sbjct: 336 EQLVALGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRLQGQ-VVVIDEAH 394
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
N+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 395 NLIDTITGIHSVEVSGSQLCQAH---SQLLQYMERY----GKRLKAK 434
>gi|321476840|gb|EFX87800.1| hypothetical protein DAPPUDRAFT_311920 [Daphnia pulex]
Length = 824
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 105/201 (52%), Gaps = 13/201 (6%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
L L C ++++ + + + +S+++TSGTLSP+ Y L+ FK++L + +
Sbjct: 366 ALNLWCLNSAVVMHEIKESTRSIIVTSGTLSPLASYQSELDI------DFKLTLEANHVI 419
Query: 492 PM------VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYM 545
P +++G ++ F + G+L + + +P G++CF SYS +
Sbjct: 420 PAKRVWIGTISQGPRNTLLNGTFKVTGTFEYQDELGRLALSVCQTIPHGVLCFLPSYSLL 479
Query: 546 DEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKAC-DCGRGAVFFSVARGKV 604
++++ W D+G+ + + +K + E++D + L ++ A D GA+ +V RGKV
Sbjct: 480 EKLVTRWQDTGLWQHLSNYKTIVCESRDSRDFEETLKSFYSAIEDSVNGALMLAVCRGKV 539
Query: 605 AEGIDFDRHYGRLVIMFGVPF 625
+EG+DF + R VI G+PF
Sbjct: 540 SEGLDFTDNNARAVICVGIPF 560
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
++DL + G++ CPY+ +R M + A +V Y YL+DP+V + + +++++ DEA
Sbjct: 123 IEDLVSLGRRIRVCPYYASRDMSEQAQIVFSPYNYLIDPRVRQSMKIPI-NDNIIILDEA 181
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
HNI++ E+ S ++ A + +I
Sbjct: 182 HNIEDSARESAGGSWSQEDFRLALNDCEKI 211
>gi|170034957|ref|XP_001845338.1| fanconi anemia group J protein [Culex quinquefasciatus]
gi|229891619|sp|B0W9F4.1|RTEL1_CULQU RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|167876796|gb|EDS40179.1| fanconi anemia group J protein [Culex quinquefasciatus]
Length = 978
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 105/198 (53%), Gaps = 5/198 (2%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
V+ C + ++ + R +S+++TSGTL+P+ L+ V + +
Sbjct: 463 VINFWCFNPGFGMRQLLGRNARSIILTSGTLAPLKPLISELDIPIAVKLENPHIIDGSQV 522
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
C ++ +G D+ +++ + R +P + G+ ++ I+P G++ FF SY +++
Sbjct: 523 CVKIVGQGPDKESLNSSYGNRDNPKYISSLGRTILSFCPIIPGGLLVFFPSYPLLNKCQE 582
Query: 551 TWNDSGILKEIMQHKLVFIE--TQDVVETTLALDNYRKACDC-GRGAVFFSVARGKVAEG 607
W ++GI +I + K +F+E +D T+ + Y K D G+GAVF +V RGKV+EG
Sbjct: 583 AWQETGIWAQISRTKPIFVEPRGKDQFLNTMT-EYYAKINDPDGKGAVFMAVCRGKVSEG 641
Query: 608 IDFDRHYGRLVIMFGVPF 625
+DF GR I+ G+PF
Sbjct: 642 LDFADMNGRACIITGLPF 659
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 123/303 (40%), Gaps = 76/303 (25%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + + V FP++ Y Q YM + L + +LE PTGTGKT++LL +++L
Sbjct: 4 YLINGIPVNFPFEP-YQVQRDYMARVIECLQNSSNGVLESPTGTGKTLSLLCSSLAWILH 62
Query: 63 KP-------------------------------------------ENPVK---------L 70
K EN K +
Sbjct: 63 KKAQVQASQRTNVSELKEFEFEKKKMGGGGGGPKPEMDKLLDELNENSGKEGGRWGVPKI 122
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
IY +RT ++ + + E+K R A+ L SR LC++ V E
Sbjct: 123 IYASRTHSQLTQAMQEMKNTSYGFMR---------AVILGSRDQLCIHPEVAKEEGNAVK 173
Query: 131 DAACRKRTASWVRALAAENPNIETCEFFENYEKAAS-AAVLPPGVYTLQDLRAFGKQQGW 189
C+ + ++A A C F+ E + + ++DL +
Sbjct: 174 TNLCKAK----IQARA--------CSFYSRVEACKERPEITGSTIMDIEDLVRVSTKLKA 221
Query: 190 CPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSV 249
CP+F+++ +++ A+V+ Y YLLDPK + E+ ++++ DEAHN+D +C E+ S+
Sbjct: 222 CPFFMSKELIENADVLFMPYNYLLDPKARKANNLEL-ANTIIILDEAHNVDKMCEESASM 280
Query: 250 SVR 252
+R
Sbjct: 281 QIR 283
>gi|302654465|ref|XP_003019039.1| hypothetical protein TRV_06940 [Trichophyton verrucosum HKI 0517]
gi|291182731|gb|EFE38394.1| hypothetical protein TRV_06940 [Trichophyton verrucosum HKI 0517]
Length = 859
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 15/205 (7%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLY-PRLLNFHP---VVSRSFKMSLTRDCICPMV 494
D + + + + ++V++ GT+ P+D Y LL++ P + + ++ + +D + +
Sbjct: 545 DPTSRFRELVEDARAVILAGGTMEPMDDYVNHLLSYVPREKIKTFTYGHVIPKDNLMAIP 604
Query: 495 LTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW-N 553
+ RG D + FD R + + G+ + S++PDG+V FF SY Y+ ++ W +
Sbjct: 605 VDRGMDGTEFNFTFDQRRSEKMIISLGRTIARYCSVIPDGVVVFFPSYDYLATVLKVWSS 664
Query: 554 DSGILKEIMQHKLVFIETQDVVETTLA----------LDNYRKACDCGRGAVFFSVARGK 603
+SG+L + + K +F E Q T + L Y + D G+G + SV GK
Sbjct: 665 NSGLLNSLSRLKPIFHEPQSTGSTNGSANANTNTDSLLSQYSASVDAGKGGLLLSVMGGK 724
Query: 604 VAEGIDFDRHYGRLVIMFGVPFQYT 628
++EGI+F GR VI+ G+PF T
Sbjct: 725 LSEGINFSDALGRGVIVVGLPFPNT 749
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 112/272 (41%), Gaps = 42/272 (15%)
Query: 46 TGKTIALLSLITSYV----LSKPENPVKLIYCTRTVHEMEKTLAELK------------- 88
+ T+ALL + L + + VK+IYC+RT ++ + E++
Sbjct: 164 SSDTLALLEKLKGPAQRIELEEGDESVKIIYCSRTHSQLIQFAQEMRRVMPISSIPPDLD 223
Query: 89 --LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
L Q I L+SRK LC+N V + + +++ C L
Sbjct: 224 DNLKEEKQVNQQDEGEWIKHTPLASRKTLCINPSVRSLSSATAINERC----------LE 273
Query: 147 AENPNI---ETCEFFENYEKAASAAV----LPPGVYTLQDLRAFGKQQGWCPYFLARHMV 199
+ PN+ + C + + + L V ++DL G + G CPY+ +R +
Sbjct: 274 IQRPNVAAEQKCPYLPTKDNELKTSQFQDHLLARVNDIEDLPPLGTKMGICPYYASRTAM 333
Query: 200 QFA--NVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLE 257
+ + V+ Y LL ++ K SV+V DEAHN+ + + SV+V L
Sbjct: 334 RASATEVITLPYPLLLQQSAREALNLSA-KNSVIVIDEAHNLVDAIVNIHSVTVSLSQLR 392
Query: 258 GATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
A L++I RFK+ GR R +L+
Sbjct: 393 TA---LAQITTYARRFKSRLKGRNRVYIAQLI 421
>gi|301756631|ref|XP_002914172.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like
protein-like [Ailuropoda melanoleuca]
Length = 908
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + + I P+V+ G
Sbjct: 610 VVKECRAVVIAGGTMQPVSDFREQLLACAGVEAERVVEFSCGHVIPPENILPLVICSGPS 669
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCFF SY Y ++ A W+ SG+L
Sbjct: 670 SQQLEFTYQKRELPQMMDETGRILCNLCTVVPGGVVCFFPSYEYQRQVYAHWDKSGLLAR 729
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y + CG+ GA+ SV GK++EGI+F +
Sbjct: 730 LAVRKKIFQEPKRANQVEQVLMEYSRCIKCCGQAGGTVTGALLLSVVGGKMSEGINFSDN 789
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 790 LGRCVVMVGMPY 801
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G +++++G SR+NLC+N V +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVQRSPFGKDTRLVSLG--SRQNLCINEDVKTLSSA 278
Query: 128 DSVDAAC---------RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C +K A + + C F+ + + GV ++
Sbjct: 279 QLINDRCMEMQRSKHGKKNRAEEEKPKRRRQEHRAACPFYSYEQLHLLRDQVLVGVKDIE 338
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 339 QLVALGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRLQGQ-VVLIDEAHN 397
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + S V L A S++ Q +ER+ RL+A+
Sbjct: 398 LIDTITSIHSAEVSGAQLCQAH---SQLLQYMERY----GKRLKAK 436
>gi|281349618|gb|EFB25202.1| hypothetical protein PANDA_002012 [Ailuropoda melanoleuca]
Length = 897
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + + I P+V+ G
Sbjct: 609 VVKECRAVVIAGGTMQPVSDFREQLLACAGVEAERVVEFSCGHVIPPENILPLVICSGPS 668
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCFF SY Y ++ A W+ SG+L
Sbjct: 669 SQQLEFTYQKRELPQMMDETGRILCNLCTVVPGGVVCFFPSYEYQRQVYAHWDKSGLLAR 728
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y + CG+ GA+ SV GK++EGI+F +
Sbjct: 729 LAVRKKIFQEPKRANQVEQVLMEYSRCIKCCGQAGGTVTGALLLSVVGGKMSEGINFSDN 788
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 789 LGRCVVMVGMPY 800
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 24/225 (10%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G +++++G SR+NLC+N V +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVQRSPFGKDTRLVSLG--SRQNLCINEDVKTLSSA 278
Query: 128 DSVDAACR--KRTASWVRALAAENPNIE------TCEFFENYEKAASAAVLPPGVYTLQD 179
++ C +R+ E P C F+ + + GV ++
Sbjct: 279 QLINDRCMEMQRSKHEKNRAEEEKPKRRRQEHRAACPFYSYEQLHLLRDQVLVGVKDIEQ 338
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN+
Sbjct: 339 LVALGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRLQGQ-VVLIDEAHNL 397
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ S V L A S++ Q +ER+ RL+A+
Sbjct: 398 IDTITSIHSAEVSGAQLCQAH---SQLLQYMERY----GKRLKAK 435
>gi|350584454|ref|XP_003126634.3| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Sus scrofa]
Length = 693
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 396 VVKECRAVVIAGGTMQPVSDFREQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGPA 455
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCFF SY Y ++ A W+ SG+L
Sbjct: 456 NQQLEFTYQKRELPQMMDETGRILCNLCNVVPGGVVCFFPSYEYQRQVHAHWDRSGLLAR 515
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y + CG+ GA+ SV GK++EGI+F
Sbjct: 516 LAVRKKIFQEPKRANQVEQVLKEYSRCIKHCGQAEGMVTGALLLSVVGGKMSEGINFSDS 575
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 576 LGRCVVMVGMPY 587
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 25/228 (10%)
Query: 66 NPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAE 125
+ V++ YC+RT ++ + +H Q G +++++G SR+NLCVN V
Sbjct: 11 DSVQIYYCSRTHSQLAQ------FVHEVQRSPFGKDTRLVSLG--SRQNLCVNDDVRKLG 62
Query: 126 NRDSVDAAC---------RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT 176
+ ++ C +K A + + C F+ + + G
Sbjct: 63 SVQLINDRCVDMQRSRRGKKSIAEEAKPRRRKQEQRTACPFYSHERLQLLRDEVLVGAKD 122
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
++ L A GK+ CPY+ +R + A +VV YQ +L +Q + VV+ DEA
Sbjct: 123 IEQLVALGKEARACPYYGSRFAIPAAQLVVLPYQMVLHAATRQAAGIRLQGQ-VVLVDEA 181
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
HN+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 182 HNLMDTITGIHSVEVSGSQLCQAH---SQLLQYMERY----GKRLKAK 222
>gi|256075476|ref|XP_002574045.1| regulator of telomere elongation helicase 1 rtel1 [Schistosoma
mansoni]
Length = 1120
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 99/175 (56%), Gaps = 4/175 (2%)
Query: 454 VVITSGTLSPIDLYPRLLNFH-PVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
+++TSGTL P++ LN P+ R+ + + D + ++ RG D ++ + +R
Sbjct: 461 IILTSGTLYPVEPIEAELNLKFPITLRNPHV-INPDQLNLSIIPRGPDGEKLNATYSVRE 519
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ 572
+ G LL+++ +VP G++ FF SYS+M + I W D + +++ + K +FIE +
Sbjct: 520 TSAYRNSLGLLLIQLADVVPAGLLIFFPSYSFMSQCIEYWKDGDVYEKLSRSKHIFIEPR 579
Query: 573 DVVETTLALDNYRK-AC-DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + YRK AC + GA+ F+V RG+V+EG+D + GR V + G+P+
Sbjct: 580 EKNQFNKIFNEYRKTACIENSVGAILFAVMRGRVSEGLDLADNAGRGVFILGIPY 634
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 113/250 (45%), Gaps = 51/250 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
++ V + FPY Y Q+ YM ++ +L+ H +LE PTGTGKT+ LL ++ L K
Sbjct: 6 IDGVEIDFPYQP-YDCQFEYMTKVLLSLNEGKHAILESPTGTGKTLCLLCASLAW-LDKQ 63
Query: 65 ENPVKLIYCTRTVHE-----------------MEKTLAELKLLHN-----YQTR-HLGPA 101
N V+LI T H+ + LA L ++N Y +R H A
Sbjct: 64 ANSVQLISATDAKHQNTMGKRPTSDNVDNALSHQNFLASLGKVNNGCKIIYASRTHSQLA 123
Query: 102 AKILAIG-----------LSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP 150
I A+ + SR LC+ V + E+ + ACR R +
Sbjct: 124 QAINALKGTVYSRRSVSVVGSRDQLCLLPDVTSLESNSAKIYACRMRVQT---------- 173
Query: 151 NIETCEFFENYEKAAS---AAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVY 207
TCE+F N++ + G+ ++DL +G++ CPYF++R + ++++
Sbjct: 174 --RTCEYFRNFDSKRDEILTNLKSEGIVDIEDLSNYGQKIKCCPYFISRELKTDSSLIFM 231
Query: 208 SYQYLLDPKV 217
Y Y+LDP+V
Sbjct: 232 PYNYVLDPRV 241
>gi|328770056|gb|EGF80098.1| hypothetical protein BATDEDRAFT_11514, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 604
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 20/197 (10%)
Query: 446 PVFDRFQSVVITSGTLSPI-DLYPRLLNFHPVVSR------SFKMSLTRDCICPMVLTRG 498
P+ + +SVV T GT+SPI D +LL P V S + + P+ +++G
Sbjct: 311 PILKQARSVVFTGGTMSPIHDFIEQLL---PSVQHDRLDVFSCGHVINSTSLLPICVSQG 367
Query: 499 SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGIL 558
L + + R D + G + +++ GIV FFVSYSY+D I+ W GI
Sbjct: 368 PTGLDFNFSHEKRVDTNMMDEAGAAIANYSNVISGGIVVFFVSYSYLDAIVKQWKSGGIW 427
Query: 559 KEIMQHKLVFIETQDVVETTLALDNYRKACDCGR----------GAVFFSVARGKVAEGI 608
I + K +FIE V E L +Y R G++ +V GK++EGI
Sbjct: 428 TRISKKKKIFIEPTSVGEVDKVLQDYSSTISRSRQTDFSTSTLTGSMLLAVVSGKLSEGI 487
Query: 609 DFDRHYGRLVIMFGVPF 625
+F GR VIM G+PF
Sbjct: 488 NFADDMGRAVIMVGIPF 504
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 82/193 (42%), Gaps = 29/193 (15%)
Query: 103 KILAIGLSSRKNLCVNSRVLAAENRDSVDAAC------RKRTASWVRALAAENPNIETCE 156
I + L SRKNLC+N V ++ ++ C + +S E+P ++
Sbjct: 1 NIKCVTLGSRKNLCINQSVTRLQSLHRINDKCLDLQKDKSSKSSGGCPYLTEDP-VQMVT 59
Query: 157 FFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPK 216
F + + + ++++ G++ CPY+ ARH + + ++ Y LL
Sbjct: 60 FDD---------TIHARIRDIEEIVQAGRKSATCPYYGARHTAKSSEIICIPYNLLLQRS 110
Query: 217 VAGIISKEMQKESVV--------VFDEAHNIDNVCIEAL-SVSVRRQTLEGATRNLSRIN 267
I ++ ++ + DEAHNI IE++ S+ +L+ + ++
Sbjct: 111 TRESIGLRLKNNIIILGKYTLFCLLDEAHNI----IESVNSLYSHTISLDQILDCKTHLS 166
Query: 268 QEIERFKATDAGR 280
+ ER+K AGR
Sbjct: 167 KYFERYKNRLAGR 179
>gi|348687642|gb|EGZ27456.1| hypothetical protein PHYSODRAFT_554000 [Phytophthora sojae]
Length = 1025
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 437 CHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFH-PVVSRSFKMSLTRDCICPMVL 495
C +A++A + + +SV++TSGTLSP++ + L P+ + + R + +
Sbjct: 630 CLNAAVAFSDIASQARSVILTSGTLSPMESFAGELGVDFPIRLEANHVVNMRKQVFIGAV 689
Query: 496 TRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS 555
G + + + ++ + DP + G+LL++ +P GI+ FF SYS ++++ W +
Sbjct: 690 MHGPGNVDLQSTYNNQQDPRYQDSMGQLLLQYSQAIPGGILMFFPSYSLLNKLTTRWKKT 749
Query: 556 GILKEIMQHKLVFIETQDVVETTLA-LDNYR-----------KACDCGRGAVFFSVARGK 603
+ EI Q K V+ E ++ + A L++Y+ +A D GA+F +V RGK
Sbjct: 750 KLWGEIEQFKTVYSEPRNAGKDFDALLEDYKDTITKCTAEGDEAQDKKSGAIFLAVYRGK 809
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
V+EGIDF R V+ G+PF
Sbjct: 810 VSEGIDFSNDNARAVLCVGIPF 831
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 35/224 (15%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLL----------HNYQTRHLGPAAKILAIGLSSRKNLC 116
P ++ +C+RT ++ + + ELK N T+ L L S++N+C
Sbjct: 262 PPRIYFCSRTHSQLAQVVDELKNCPVSYLDSPEDSNTYTKQLQTCV------LGSKRNMC 315
Query: 117 VNSRVLAAENRD--SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGV 174
VN +V NRD VD CR LA E +C +F+ +KA P V
Sbjct: 316 VNRKV----NRDPSQVDEKCR---------LALEGA---SCSYFKKRKKANDLRRHVPPV 359
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
+ ++DL ++ C YF AR + AN+V Y YLLDP + + + K+S++V D
Sbjct: 360 WDIEDLVKLAQKHRECAYFHAREALDHANIVFAPYNYLLDPSIREAVGITL-KDSIIVLD 418
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDA 278
EAHN+++ C + SV V + L + + S + + R K+ +A
Sbjct: 419 EAHNVEDTCRSSASVEVTTEVLAASIKAFSIVIKHGNRPKSYNA 462
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 3 FKLEDVTVYFPYDN-IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
F + V FP +P Q++ M ++ AL + H LLE PTG+GKT+ALL
Sbjct: 22 FMIMGYNVEFPRGKRPFPAQFAVMNKVLTALKTEQHALLESPTGSGKTLALL 73
>gi|261327010|emb|CBH09985.1| helicase, putative [Trypanosoma brucei gambiense DAL972]
Length = 963
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 141/276 (51%), Gaps = 38/276 (13%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV---- 60
++ V V FP+ YP Q YM + AL + LLE PTGTGKT+ LL + +++
Sbjct: 6 IDGVEVSFPFAP-YPVQEEYMRSVIYALKGSHNALLESPTGTGKTLCLLCGVLAWLDERR 64
Query: 61 -------LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIG-LSSR 112
+S + ++++YC+RT ++ + + E K +TR+ + I ++ L SR
Sbjct: 65 ICFLNSGISDRTSLLRVVYCSRTHAQLSQVIREFK-----RTRY----SSIFSMAVLGSR 115
Query: 113 KNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE-KAASAAVLP 171
++C+NS+VL + + +++ S +R E+ N C F+ YE +AA P
Sbjct: 116 DHMCLNSQVLQLPSSHA-----QRKLCSQLR----EDRN---CRFYRGYEARAAGRKDFP 163
Query: 172 P--GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
++ ++DL + G++ G+CPY+ R + A+VV Y Y+ D + E+ S
Sbjct: 164 DELWIHDMEDLVSEGRKCGFCPYYYERDAAKDADVVFLPYNYVFDVSFRKQLPFELSG-S 222
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
V++ DEAHN+ +V A ++++ L A SR
Sbjct: 223 VLIVDEAHNLPSVLGSASCMNLQPLDLANAICECSR 258
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 10/209 (4%)
Query: 427 HIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT 486
H L C D S V+ + S+++TSGTLSP+ + L V +
Sbjct: 417 HANPRTLSYWCLDISRVVQSLVCDLHSLLLTSGTLSPLSHFAMELGVSFEVCLKGSHVIE 476
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
+ VL RG ++ + R+ G LV + I P GI+ FF SY ++
Sbjct: 477 EKQVIGSVLCRGPGGERLNGGYAFRNGVDYRIGLGMALVNISRITPGGILVFFPSYVALN 536
Query: 547 EIIATWNDSG--------ILKEIMQHKLVFIETQDVVETTLALDNYRKACDCG--RGAVF 596
+ W G + + Q K VF+E + + ++++ D RGA
Sbjct: 537 AAVDLWRTGGGRANETETVWAMLEQVKPVFVEPAAAADAQTIVTSFQREVDANSTRGAFL 596
Query: 597 FSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+V RG+++EGIDF +GR V++ G+PF
Sbjct: 597 LAVCRGRISEGIDFADQHGRCVVIAGIPF 625
>gi|449274178|gb|EMC83461.1| Regulator of telomere elongation helicase 1, partial [Columba
livia]
Length = 1124
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 144/322 (44%), Gaps = 67/322 (20%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L + V FP+ YP Q +YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGIAVDFPF-QPYPCQEAYMAKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWREHFK 64
Query: 54 SLITSYVLSK--------PENPV--------------------KLIYCTRTVHEMEKTLA 85
I++ +++ PE P+ K+IY +RT ++ + +
Sbjct: 65 DTISARKIAQRMNGMELFPERPMSSWGNAATDADIPAYYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
ELK N R KI +G SR+ LC++ V E+ CR + +
Sbjct: 125 ELK---NTVYR-----PKICVLG--SREQLCIHPEVKRQESNHMQIYMCRMKVMA----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
C F+ N E+ ++ L + ++DL G + CPY+L+R + Q A+++
Sbjct: 170 -------RACHFYNNVEEKSTEKELIESIMDIEDLVKNGNKHRACPYYLSRSLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+ DEAHN++ +C E+ S + L A L
Sbjct: 223 FMPYNYLLDSKSRRAHNLDL-KGTVVILDEAHNVEKLCEESSSFDLTPYDLASA---LDA 278
Query: 266 INQEI-ERFKATDAGRLRAEYN 286
IN + E+ K + AE+N
Sbjct: 279 INVVLEEQAKVVQQNEINAEFN 300
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 91/177 (51%), Gaps = 5/177 (2%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+++++TSGTLSP+ + + VS + + + ++ +G D +++ ++ R
Sbjct: 473 RTIILTSGTLSPLSSFTMEMQIPFPVSLENPHVIDKHQLWVGIIPKGPDGTVLTSTYERR 532
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK + +V +VP G++ FF SY MD+ + W + + I + K +F+E
Sbjct: 533 FSGDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSLEYWREHDFARRIEEVKPMFVEP 592
Query: 572 QD---VVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
++ E +D + C GA F +V RGK +EG+DF GR VI+ G+PF
Sbjct: 593 RNKGSFAEVDYLMD--KVVCPKSNGAAFLAVCRGKASEGLDFADVNGRGVIITGLPF 647
>gi|72386955|ref|XP_843902.1| helicase [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62359030|gb|AAX79479.1| helicase, putative [Trypanosoma brucei]
gi|70800434|gb|AAZ10343.1| helicase, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 963
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 141/276 (51%), Gaps = 38/276 (13%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV---- 60
++ V V FP+ YP Q YM + AL + LLE PTGTGKT+ LL + +++
Sbjct: 6 IDGVEVSFPFAP-YPVQEEYMRSVIYALKGSHNALLESPTGTGKTLCLLCGVLAWLDERR 64
Query: 61 -------LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIG-LSSR 112
+S + ++++YC+RT ++ + + E K +TR+ + I ++ L SR
Sbjct: 65 ICFLNSGISDRTSLLRVVYCSRTHAQLSQVIREFK-----RTRY----SSIFSMAVLGSR 115
Query: 113 KNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE-KAASAAVLP 171
++C+NS+VL + + +++ S +R E+ N C F+ YE +AA P
Sbjct: 116 DHMCLNSQVLQLPSSHA-----QRKLCSQLR----EDRN---CRFYRGYEARAAGRKDFP 163
Query: 172 P--GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
++ ++DL + G++ G+CPY+ R + A+VV Y Y+ D + E+ S
Sbjct: 164 DELWIHDMEDLVSEGRKCGFCPYYYERDAAKDADVVFLPYNYVFDVSFRKQLPFELSG-S 222
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
V++ DEAHN+ +V A ++++ L A SR
Sbjct: 223 VLIVDEAHNLPSVLGSASCMNLQPLDLANAICECSR 258
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 10/209 (4%)
Query: 427 HIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT 486
H L C D S V+ + S+++TSGTLSP+ + L V +
Sbjct: 417 HANPRTLSYWCLDISRVVQSLVCDLHSLLLTSGTLSPLSHFAMELGVSFEVCLKGSHVIE 476
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
+ VL RG ++ + R+ G LV + I P GI+ FF SY ++
Sbjct: 477 EKQVIGSVLCRGPGGERLNGGYAFRNGVDYRIGLGMALVNISRITPGGILVFFPSYVALN 536
Query: 547 EIIATWNDSG--------ILKEIMQHKLVFIETQDVVETTLALDNYRKACDCG--RGAVF 596
+ W G + + Q K VF+E + + ++++ D RGA
Sbjct: 537 AAVDLWRTGGGRANETETVWAMLEQVKPVFVEPAAAADAQTIVTSFQREVDANSTRGAFL 596
Query: 597 FSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+V RG+++EGIDF +GR V++ G+PF
Sbjct: 597 LAVCRGRISEGIDFADQHGRCVVIAGIPF 625
>gi|323510681|ref|NP_116575.3| regulator of telomere elongation helicase 1 isoform 2 [Homo
sapiens]
Length = 1243
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 147/338 (43%), Gaps = 75/338 (22%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRH----------------LGPAAKILAIGLSSRKNLCVNSRVLAAENRDS 129
EL+ +Y++R L P + + L SR+ LC++ V E+
Sbjct: 125 ELRNT-SYRSRCRATLWVLETAPPRPTVLSPTRPKVCV-LGSREQLCIHPEVKKQESNHL 182
Query: 130 VDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGW 189
CRK+ AS +C F+ N E+ + L + ++DL G +
Sbjct: 183 QIHLCRKKVAS------------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRV 230
Query: 190 CPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSV 249
CPY+L+R++ Q A+++ Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S
Sbjct: 231 CPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASF 289
Query: 250 SVRRQTLEGATRNLSRINQEI-ERFKATDAGRLRAEYN 286
+ L L I+Q + E+ KA G E++
Sbjct: 290 DLTPHDL---ASGLDVIDQVLEEQTKAAQQGEPHPEFS 324
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 497 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 556
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 557 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 616
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 617 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 672
>gi|195131929|ref|XP_002010396.1| GI15901 [Drosophila mojavensis]
gi|229891624|sp|B4L1Z2.1|RTEL1_DROMO RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|193908846|gb|EDW07713.1| GI15901 [Drosophila mojavensis]
Length = 1014
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 107/197 (54%), Gaps = 5/197 (2%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 454 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 511
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + + R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 512 QVYVKIIGTGPDREQLISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQC 571
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ ++ K +F+E + + T ++ + +A +GA F +V RGKV+EG+
Sbjct: 572 VDAWQASGLWADLSSRKPIFLEPRGKDQFTSTMEEFYQAIRDSKGACFMAVCRGKVSEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+PF
Sbjct: 632 DFADRNGRAVIITGLPF 648
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 139/313 (44%), Gaps = 64/313 (20%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK-PEN 66
+ V+FP++ Y Q ++M ++ L + +LE PTGTGKT++LL +++ ++ E+
Sbjct: 9 IPVHFPFEP-YEVQRAFMEKVIMCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQSEH 67
Query: 67 PV---------------------------------------KLIYCTRTVHEMEKTLAEL 87
+ K+IY +RT ++ + + EL
Sbjct: 68 QINMQKLQMEQQQRQATGGSATGAISDLALTMGKANNWGVPKVIYASRTHSQLTQAMREL 127
Query: 88 KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAA 147
K +T + A + ++ L SR LC++ V+ + + C+ +
Sbjct: 128 K-----RTAY----ASMRSVVLGSRDQLCIHPDVMKEQGNSNKVNMCKLKV--------- 169
Query: 148 ENPNIETCEFFENYE-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
+ +TC F E K P + ++DL G++ CPY+ ++ +V A++
Sbjct: 170 ---HAKTCSFQLRVESKKDHPDFRGPSIMDIEDLVKVGQRLKMCPYYASKELVSSADITF 226
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
Y YLLDPK E+ ++V+ DEAHNI+ +C E+ SV +R + A +++ I
Sbjct: 227 MPYNYLLDPKARKANKIEL-SNTIVILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHI 285
Query: 267 NQEIERFKATDAG 279
+ + D+G
Sbjct: 286 MKIFTSADSQDSG 298
>gi|327272138|ref|XP_003220843.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Anolis carolinensis]
Length = 914
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLLNFHPVVSR-----SFKMSLTRDCICPMVLTRGSD 500
V ++V+I GT+ PI D +LL + S + D I P++L G
Sbjct: 613 VLKECRAVIIAGGTMQPIADFREQLLQSAGASADRIEEFSCGHVIPPDNILPIILCSGPS 672
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ ++ R P + G++L + +IVP G+VCFF SY Y ++ W +G+L +
Sbjct: 673 NQQLDFTYEKRGLPQMMEETGRILCNLCNIVPGGMVCFFPSYEYEKQVYMHWGKTGLLTQ 732
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y K C + GA+ FSV GK++EGI+F
Sbjct: 733 LAAKKKIFQEPKRANQVEQVLAEYAKCIKRCNQTGGPMTGALLFSVVGGKMSEGINFSDD 792
Query: 614 YGRLVIMFGVPF 625
GR VIM G+P+
Sbjct: 793 LGRCVIMVGMPY 804
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 23/198 (11%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E+ K+ YC+RT ++ + +H Q G ++ ++G SR+NLCVN V
Sbjct: 224 EHVTKIYYCSRTHSQL------AQFVHEVQKSPFGKEIRLASLG--SRQNLCVNEEVRRM 275
Query: 125 ENRDSVDAACR--KRTASWVRALAAENPNIET------CEFFENYEKAA--SAAVLPPGV 174
++ C ++ ++ E +T C F+ +YE VL V
Sbjct: 276 GAVQLINDRCMEMQKNKHEKKSTGEETEKKKTRVSRTVCPFY-SYEHMQFLRDEVLVQ-V 333
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
++ L GK+ CPY+ +RH + A +VV YQ LL ++ K+ VV+ D
Sbjct: 334 KDIEQLVTLGKEMKACPYYGSRHAIPAAQLVVLPYQMLLHDATRNASGIKL-KDQVVIID 392
Query: 235 EAHN-IDNV-CIEALSVS 250
EAHN ID + CI + VS
Sbjct: 393 EAHNLIDTITCIYSAQVS 410
>gi|195049134|ref|XP_001992658.1| GH24089 [Drosophila grimshawi]
gi|229891623|sp|B4JNS2.1|RTEL1_DROGR RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|193893499|gb|EDV92365.1| GH24089 [Drosophila grimshawi]
Length = 986
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 105/197 (53%), Gaps = 5/197 (2%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + +SV++TSGTL+P L P + V++ + +
Sbjct: 454 IINFWCFNPGFGMEQLLNTHVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVNEA 511
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + + R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 512 QVYVKIIGTGPDREQLISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQC 571
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GA F +V RGKV+EG+
Sbjct: 572 VDAWQASGLWADISSRKPIFLEPRGKDQFTSTMEEFYQAIRDSKGACFMAVCRGKVSEGL 631
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+PF
Sbjct: 632 DFADRNGRAVIITGLPF 648
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 131/302 (43%), Gaps = 67/302 (22%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY-------- 59
+ V+FP++ Y Q +YM ++ L + +LE PTGTGKT++LL +
Sbjct: 9 IPVHFPFEP-YDVQRAYMEKVIICLRDGTNGVLESPTGTGKTLSLLCSTLGWIRTRQSEV 67
Query: 60 -------------------------------VLSKPEN---PVKLIYCTRTVHEMEKTLA 85
V+ K N P K+IY +RT ++ + +
Sbjct: 68 QLNMQKLQHDQQTQLTGAAGAGAAMGSEIAAVIGKSNNWGVP-KVIYASRTHSQLTQAMR 126
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
ELK +T + A + A+ L SR LC++ V+ + + C+ + +
Sbjct: 127 ELK-----RTAY----ANMRAVVLGSRDQLCIHPDVMREQGNSNKVNMCKLKVHA----- 172
Query: 146 AAENPNIETCEFFENYE-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
++C F E K P + ++DL G++ CPYF ++ +V A++
Sbjct: 173 -------KSCTFQLRVESKKDHPDFRGPSIMDIEDLVKVGQRLKMCPYFASKELVNSADI 225
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
Y YLLDPK E+ ++V+ DE HNI+ +C E+ SV +R + A +++
Sbjct: 226 TFMPYNYLLDPKARKANKIEL-SNAIVILDEGHNIEKICEESASVQIRSSDVAIAIEDVT 284
Query: 265 RI 266
I
Sbjct: 285 HI 286
>gi|387594391|gb|EIJ89415.1| hypothetical protein NEQG_00185 [Nematocida parisii ERTm3]
gi|387596770|gb|EIJ94391.1| hypothetical protein NEPG_01059 [Nematocida parisii ERTm1]
Length = 689
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 132/260 (50%), Gaps = 27/260 (10%)
Query: 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENP-VKLIYCTR 75
+Y Q + + L+ ++E PTGTGKT+++L + +++ +N VK+ TR
Sbjct: 17 LYEPQRQSIRTILNCLEEGVSGMIESPTGTGKTLSILESVVAWINKNKQNKEVKVYVTTR 76
Query: 76 TVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACR 135
T+ + ++ + K + RH P +LA SR +LC+N V A N +D+AC+
Sbjct: 77 TIKQAQQLIEYFKTI-----RH-APKMSLLA----SRAHLCLNPEVRTAGN---LDSACK 123
Query: 136 KRTASWVRALAAENPNIETCEFF--ENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYF 193
+ + + ++N C+++ + + +S P V++++DL G + CPY+
Sbjct: 124 NKN----KDINSKNK----CKYYSIDKESRTSSMENSLPTVFSIEDLIQSGSECSTCPYY 175
Query: 194 LARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRR 253
+ M + +V Y Y+++ + + ++ S+++ DEAHN+D++C + SV + R
Sbjct: 176 YTKDMQDKSTIVFAPYNYIINKSIVKAMGIDLNG-SIIIVDEAHNLDDICRSSGSVDIER 234
Query: 254 QTLEGATRNLS--RINQEIE 271
L+G L+ +N IE
Sbjct: 235 IILDGILTKLTTETVNASIE 254
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 22/194 (11%)
Query: 440 ASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP--MVLTR 497
A++ P++ +SV++ SGTL P +P L+N S SFK L+ + + TR
Sbjct: 377 AAVQFDPIYKMARSVILLSGTLQP---FPELVNELTYNSGSFKYFLSAGHVISDSQLYTR 433
Query: 498 GSDQL---PVSTKFDMRSDPGVARNYGKLLVEMVSIVP--DGIVCFFVSYSYMDEIIATW 552
Q ++ + +P + +++ ++ + G++CF + +
Sbjct: 434 TVGQYNGHTLTGTYKETKNPVYFQTISRVITDIAHSLERVGGVLCF----------VPNY 483
Query: 553 NDSGILKEIMQHKLV-FIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFD 611
N +LK ++ +L+ + E+ D L YR C G+ VF V RGK +EGI+F
Sbjct: 484 NTITLLKSKLEKQLLLYTESTDNGIFEDNLRKYRSKCLNGK-CVFLCVFRGKASEGINFK 542
Query: 612 RHYGRLVIMFGVPF 625
H R V++ G+P+
Sbjct: 543 DHESRAVVLVGIPY 556
>gi|297716208|ref|XP_002834429.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like, partial [Pongo abelii]
Length = 127
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%)
Query: 255 TLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDI 314
TL+ NL + + + R K TD RLR EY RLVEGL DA L+NP LP ++
Sbjct: 10 TLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARETDAHLANPVLPDEV 69
Query: 315 LKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTL 372
L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++ + I +K L
Sbjct: 70 LQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPL 127
>gi|344233991|gb|EGV65861.1| hypothetical protein CANTEDRAFT_101726 [Candida tenuis ATCC 10573]
Length = 807
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 10/199 (5%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM----V 494
D S KP+ + + +++ GT+ P+ Y L P + + + D I P+ V
Sbjct: 505 DPSEIFKPIVEDCKCLILAGGTMEPMSDYTEYL--FPYLPTTQIKQFSCDHIIPIENLKV 562
Query: 495 LTRGS--DQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW 552
L GS +Q+ + F R++ + G+ L+E++ PDG V F SY Y++ I+A W
Sbjct: 563 LPIGSYKNQI-LDFSFKNRNNSTLILRLGECLIEIMKNTPDGTVVFLPSYKYLNHIVAEW 621
Query: 553 NDSGILKEIMQHKL-VFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFD 611
GI K++ K +F+E + L Y +A G+GAV FSV GK++EGI+F
Sbjct: 622 KQMGIWKQMEALKSSLFVEPSSSSQVDEVLKKYSRAIKTGKGAVLFSVVGGKLSEGINFS 681
Query: 612 RHYGRLVIMFGVPFQYTLS 630
R VIM G+P+ +S
Sbjct: 682 DELARAVIMVGLPYPNLMS 700
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 12/211 (5%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
++ K+ + +RT ++ + +L L +++ + ++ + + SRK LC++ ++
Sbjct: 180 DDSTKIFFSSRTHTQLGQFSGQLALT-TFESSLYDMSERVKYLPMGSRKQLCIHPKISKL 238
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETC-EFFENYEKAASAAVLPPGVYTLQDLRAF 183
N +S++ AC + + N +E + F +Y ++ +Q+L+
Sbjct: 239 SNTESINEACGELAKKESKCEFVCNTKVEGIKQQFNDYSLTK--------IHDIQELKQL 290
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G+ CPY+ R+ ++ V+ YQ LL+ ++ ++ ++V DEAHN+ +
Sbjct: 291 GEYLKICPYYSVRNNLKMTEVISLPYQMLLEENARDSLNINIKNSIIIV-DEAHNLLDTI 349
Query: 244 IEALSVSVRRQTLEGATRNLS-RINQEIERF 273
S ++ + L ++L N+ I+R
Sbjct: 350 NALNSAAISAEELTSLNQSLKLYFNKFIKRL 380
>gi|429965550|gb|ELA47547.1| hypothetical protein VCUG_00978 [Vavraia culicis 'floridensis']
Length = 855
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 131/272 (48%), Gaps = 33/272 (12%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
K+ +T+ FP+ YP Q ++ L K ++E PTGTGK+IA+L + ++
Sbjct: 1 MKINSITIAFPF-KPYPAQILTCSKIIDCLKNKKTGIIESPTGTGKSIAILCAVLAWHAH 59
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
+ ++ C+RT ++++ +A+L+ + P +LA SR+ LC+N L
Sbjct: 60 NRD--TRIFICSRTHKQLDQLVAQLR------STVYTPKVCVLA----SRRVLCLNRNAL 107
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
+ V++ CR+ C +F E+ + V+ +++LR
Sbjct: 108 KGD----VNSTCRELVKKG------------ECRYFMGKERLVKSI---GDVHDIEELRQ 148
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G++ CPY+ +R + + A + Y Y++DP V + E+ K SVV+ DEAHNI++
Sbjct: 149 MGEKCTGCPYYASRMLSESATITFMPYNYVVDPMVRHTMGIEL-KNSVVIVDEAHNIEDA 207
Query: 243 CIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
C A S+ + T++ + L + E +K
Sbjct: 208 CRSAGSIELTNNTIDIMLKELVSAYRRAEEYK 239
>gi|19074028|ref|NP_584634.1| ATP-DEPENDENT DNA-BINDING HELICASE (RAD3/XPD subfamily)
[Encephalitozoon cuniculi GB-M1]
gi|19068670|emb|CAD25138.1| ATP-DEPENDENT DNA-BINDING HELICASE (RAD3/XPD subfamily)
[Encephalitozoon cuniculi GB-M1]
gi|449329243|gb|AGE95516.1| ATP-dependent DNA-binding helicase [Encephalitozoon cuniculi]
Length = 678
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 142/665 (21%), Positives = 266/665 (40%), Gaps = 131/665 (19%)
Query: 4 KLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY---- 59
K+ V + P++ YP Q M +L L + L+E PTGTGK+++++ + Y
Sbjct: 5 KISGVPIEMPFEP-YPAQIVTMTKLISCLMTRTSGLVESPTGTGKSLSIICAVLGYNEHL 63
Query: 60 ------VLSKP------------ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
+ +K E +K+I C+RT ++++ + +L+ Q R P
Sbjct: 64 KRSIRGIGAKRREGGGPKGEEAREEKLKIIICSRTHKQLDQLVDQLR---KTQYR---PR 117
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
ILA SR C++ ++ ++++ C + S +C +F
Sbjct: 118 ISILA----SRAQYCISPKLSDVADKNT---GCSELVKSG------------SCAYFTGK 158
Query: 162 EKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
++ A + ++ +++L+ G++ CPY+ +R + + A V+ Y YL+D ++
Sbjct: 159 DRLAKK--VGDKIFDIEELKGEGRRCVGCPYYASRILNEDAEVIFAPYNYLIDSRIREST 216
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEI-ERFKATDA-G 279
++ SVV+ DEAHNI++VC + S+ E ++R + I EI K + A G
Sbjct: 217 GISLEN-SVVIVDEAHNIEDVCRSSGSI-------ELSSRIMEIIQNEILGAVKRSGALG 268
Query: 280 RLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQY 339
+R ++ L++ L A +D G R R +
Sbjct: 269 EIRMDFVNLMDFFRK----------LREGAESTDEFDRVTAGGKLRI--------RKGRE 310
Query: 340 LRGRLETENVEKEGPVSFVASITA-HAGIDQKTLR-----FCYERLHSLMLTLEITDTDE 393
++ LE + KE + SI A D K L E L S++ + +D D
Sbjct: 311 IKEELERMGIGKEFVLKIKNSIYAIQKSEDAKDLLNVSTFHVLEGLDSVLSAIHFSDCDA 370
Query: 394 FLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQS 453
+ + + + + + FS D + + +S
Sbjct: 371 YSFVFHKMNDENVKNSRSCRFS-----------------YNFWLLDGGYTFRSFVGKVRS 413
Query: 454 VVITSGTLSPIDLYPRLLNF---HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM 510
VV+ SGTL+P + L H +V+ +T+ + + +G + + +
Sbjct: 414 VVLLSGTLTPFSSFSSELGHEFAHTIVAPHL---ITQKQVFVSCVRKGHLLKELIGTYGV 470
Query: 511 RSDPGVARNYGKLLVEMVSIVPD--GIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
P +++V++ + D G + F SYS++ E +Q ++
Sbjct: 471 SDTPQYLDQLCRVIVDVSCKIKDHGGTLVFVPSYSFL--------------ENLQKRMGG 516
Query: 569 IETQDVVETTLALDN--------YRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIM 620
+ + +VE N Y+ + AVF V RGK +EGIDF + R VI
Sbjct: 517 VSSGLLVEPKSGAGNEFEKVMRRYKNRIATKQSAVFMCVYRGKASEGIDFKDSFARAVIA 576
Query: 621 FGVPF 625
G+P+
Sbjct: 577 VGIPY 581
>gi|357622566|gb|EHJ73993.1| fanconi anemia group J protein [Danaus plexippus]
Length = 950
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 128/284 (45%), Gaps = 62/284 (21%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP--- 64
+ V FP++ Y Q SYM ++ +L + +LE PTGTGKT++LL +++L K
Sbjct: 9 IPVTFPFE-PYEVQKSYMEKVIESLQNNTNAVLESPTGTGKTLSLLCSSLAWLLVKKAQL 67
Query: 65 ---------------ENPV--------------------KLIYCTRTVHEMEKTLAELKL 89
N + K+IY +RT ++ + + ELK
Sbjct: 68 QMNAQLGNFSEHSGYSNALRDNLKSNAGKSKDNTSWGMPKIIYSSRTHSQLTQAMQELK- 126
Query: 90 LHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAEN 149
RH+ A L SR +C++ V N + C+ + S
Sbjct: 127 --RSSYRHVKAAV------LGSRDQMCIHPEVSKETNNMNKVHMCQLKVKS--------- 169
Query: 150 PNIETCEFFENYE-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYS 208
TC F+ N E K +V + ++DL + GK+ CPY+L++ + Q A+++
Sbjct: 170 ---RTCHFYNNVESKKDDRSVKGDDILDIEDLVSVGKKLKCCPYYLSKELKQDADIIFMP 226
Query: 209 YQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVR 252
Y YLLDPK E+ ++++ DEAHN++ +C E+ S+ +R
Sbjct: 227 YNYLLDPKSRRANGVELM-NNIIILDEAHNVEKMCEESASLQIR 269
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 5/198 (2%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C +K + ++ +S+++TSGTL+P+ L V + + I
Sbjct: 442 VLSYWCFSPGFGMKQLLEQNVRSIILTSGTLAPLKPLISELGIPIGVQLENPHIVKSNQI 501
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ +G D +++ + R++P + G+ ++ ++PDG++ FF SY M +
Sbjct: 502 HVKIIGQGPDSETLNSNYQNRNNPKYISSLGRTILSFSRVIPDGLLVFFPSYPIMTKCQE 561
Query: 551 TWNDSGILKEIMQHKLVFIETQ--DVVETTLALDNYRKACD-CGRGAVFFSVARGKVAEG 607
W GI I K +F+E Q D + + D Y K D RGA F +V RGKV+EG
Sbjct: 562 MWQAEGIWSSINSIKPIFVEPQRKDTFNSIIN-DYYSKIRDPNSRGACFMAVCRGKVSEG 620
Query: 608 IDFDRHYGRLVIMFGVPF 625
+DF GR VI+ G+PF
Sbjct: 621 LDFADMNGRAVIITGLPF 638
>gi|156089201|ref|XP_001612007.1| DNA repair helicase (rad3) family protein [Babesia bovis]
gi|154799261|gb|EDO08439.1| DNA repair helicase (rad3) family protein [Babesia bovis]
Length = 948
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 23/195 (11%)
Query: 452 QSVVITSGTLSPI-DLYPRL----LNFHPVVSRSFKMSLTRDCICPMVLTRGS-DQLPVS 505
+SV++TSGTLSP+ DL + + F +S S + ++ +CP V+T G D +S
Sbjct: 537 RSVILTSGTLSPLADLANSIGGDKVRFEYQLSSSHIVPVSN--LCPRVITGGDVDGSILS 594
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
+ ++ RS P + G+ ++ V VP G++ FFVSY +++ + W +GI + + K
Sbjct: 595 SDYNNRSTPSYIKALGESVLTFVRCVPAGVLVFFVSYPVLEDTVNAWKSAGIFAALEKEK 654
Query: 566 LVFIETQ---------------DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610
VFIE++ +V +T L Y D G G +F V RGK+AEGIDF
Sbjct: 655 RVFIESKGSAKSFVGNYYNRNTNVDDTQSQLKEYFTLTDKGVGCLFLGVCRGKLAEGIDF 714
Query: 611 DRHYGRLVIMFGVPF 625
R V + GVP+
Sbjct: 715 SDDSCRGVFLCGVPY 729
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 73/298 (24%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLI-------- 56
++ + V FPY Y Q YM + +A+ + LLE PTGTGKT++L+
Sbjct: 11 IDGIEVRFPY-TPYENQTVYMETVIKAVRHGKNALLESPTGTGKTLSLICSTLACIWHTR 69
Query: 57 ----TSYVLS------------------------------KPENPVKLIYCTRTVHEMEK 82
TS+ L K ++++Y +RT +++++
Sbjct: 70 FKDETSFNLKPVQTTSEEGLMKTMQDLRDSIQQKKTIVKFKGSKKLRILYASRTHNQLKQ 129
Query: 83 TLAELKLLHNYQTRHLGPAAK--ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTAS 140
+ E K +T + A + + L SR LC++ A ++++A CRK
Sbjct: 130 VIREAK-----KTSYAKEFASKGLTTVLLGSRDQLCIHPGKKNATG-EALNAFCRKMVKH 183
Query: 141 WVRALAAENPNIETCEFFENYEKAA-SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMV 199
+ C ++ +K S + ++DL + GK CP++ R
Sbjct: 184 ------------QGCMYYRGLKKKEISRKIQFYEFVDIEDLISLGKSTRCCPFYACRDAH 231
Query: 200 QFANVVVYSYQYLLDPKVAGIISKEMQ----KESVVVFDEAHNIDNVCIEALSVSVRR 253
+ A+V + Y YLL P IS++ +V++ DEAHNI++V + ++R+
Sbjct: 232 ESADVTMLPYNYLLSP-----ISRDAMDIVLDNAVLIIDEAHNIESVAESSAGFTIRQ 284
>gi|296804606|ref|XP_002843155.1| DEAD_2 domain-containing protein [Arthroderma otae CBS 113480]
gi|238845757|gb|EEQ35419.1| DEAD_2 domain-containing protein [Arthroderma otae CBS 113480]
Length = 854
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 15/192 (7%)
Query: 452 QSVVITSGTLSPIDLY-PRLLNFHP---VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTK 507
++V++ GT+ P+D Y LL++ P V + ++ + +D + + + RG D + +
Sbjct: 555 RAVILAGGTMEPMDDYVDHLLSYVPREKVKTFTYGHVIPKDNLIAIPVARGMDNVEFNFT 614
Query: 508 FDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND-SGILKEIMQHKL 566
FD R + + G+++ S++PDG+V FF SY Y+ ++ W+ SG+L + + K
Sbjct: 615 FDQRQSEKMITSLGQMIARFCSVIPDGVVVFFPSYDYLATVLRVWSSTSGVLDNLSRLKP 674
Query: 567 VFIETQDVVETTLA----------LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGR 616
+F E + L Y + D G+G + SV GK++EGI+F GR
Sbjct: 675 IFHEAPSDSSGSNNNNTNTNTDSLLQQYSASIDAGKGGLLLSVMGGKLSEGINFSDALGR 734
Query: 617 LVIMFGVPFQYT 628
VI+ G+PF T
Sbjct: 735 GVIVVGLPFPNT 746
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 115/268 (42%), Gaps = 38/268 (14%)
Query: 46 TGKTIALLSLITSYVLSKP---ENPVKLIYCTRT-------VHEMEKTLA------ELKL 89
+ T+ALL + V E VK+IYC+RT EM + L +L
Sbjct: 165 SADTLALLERLKGPVRQAEDDDEETVKIIYCSRTHSQLIQFAQEMRRVLPVSSVPPDLDE 224
Query: 90 LHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAAC----RKRTASWVRA- 144
+ + I L+SRK LC+N V + + +++ C R A+ R
Sbjct: 225 KQDEKEGENEKGEWIKHTPLASRKALCINPSVRSLASATAINERCLEIQRPNVAAEHRCP 284
Query: 145 -LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF-- 201
L A+N ++T +F ++ L V ++DL G + G CPY+ R ++
Sbjct: 285 YLPADN-ELKTSQFQDH---------LLARVSDIEDLPPLGTRIGICPYYATRTAMRAPA 334
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
VV Y LL ++ +K SV++ DEAHN+ + + SV+V L A
Sbjct: 335 TEVVTLPYPLLLQQSAREALNLSAKK-SVIIIDEAHNLVDAIVNIHSVAVSLAQLRTA-- 391
Query: 262 NLSRINQEIERFKATDAGRLRAEYNRLV 289
L++I +RFK GR R +L+
Sbjct: 392 -LAQITTYAKRFKTRLRGRNRVYIAQLI 418
>gi|426392491|ref|XP_004062583.1| PREDICTED: regulator of telomere elongation helicase 1 isoform 2
[Gorilla gorilla gorilla]
Length = 1244
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 145/338 (42%), Gaps = 75/338 (22%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLA 85
L LS N K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDAIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRH----------------LGPAAKILAIGLSSRKNLCVNSRVLAAENRDS 129
EL+ +Y++R L P + + L SR+ LC++ V E+
Sbjct: 125 ELRNT-SYRSRCRATLWVLETAPPRPTVLSPTRPKVCV-LGSREQLCIHPEVKKQESNHI 182
Query: 130 VDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGW 189
CRK+ AS +C F+ N E+ + L + ++DL G +
Sbjct: 183 QIHLCRKKVAS------------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRV 230
Query: 190 CPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSV 249
CPY+L+R++ Q A+++ Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S
Sbjct: 231 CPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASF 289
Query: 250 SVRRQTLEGATRNLSRINQEI-ERFKATDAGRLRAEYN 286
+ L L I+Q + E+ KA G E++
Sbjct: 290 DLTPHDL---ASGLDVIDQVLEEQTKAAQQGERHPEFS 324
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 497 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 556
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 557 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 616
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 617 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 672
>gi|410907467|ref|XP_003967213.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Takifugu rubripes]
Length = 979
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFHP------VVSRSFKMSLTRDCICPMVLTRGSD 500
+ ++VVI GT+ P+ + + L F +V S + + I P+VL G
Sbjct: 682 ILKECRAVVIAGGTMQPVSDFKQELLFSAGVGEERIVEFSCGHVIPPENILPLVLCNGPS 741
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ F R P + G++L + ++VP G+VCFF SY Y+ I + W +G L
Sbjct: 742 GQELDFTFQNRDSPHMMDETGRILSNICNVVPGGVVCFFPSYEYLRRITSHWETNGTLAR 801
Query: 561 IMQHKLVFIETQDVVETTLALDNY-----RKACDCG--RGAVFFSVARGKVAEGIDFDRH 613
+ K +F E + L ++ R A D G GA+ FSV GK++EGI+F
Sbjct: 802 LANKKKIFHEPKKSNLVEQVLKDFSRCIQRCAADSGALTGALLFSVVGGKMSEGINFSDD 861
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 862 LGRCVVMVGMPY 873
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 100/238 (42%), Gaps = 45/238 (18%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E+ K+ YC+RT ++ + +H Q A I + L SR+NLC+N V
Sbjct: 293 EHITKIYYCSRTHSQL------AQFVHEVQKSPF--ANDISLVTLGSRQNLCINEEVRRL 344
Query: 125 ENRDSVDAACRKRTASWVRALAAEN-------PNIETCEFFENYEKAASAAVLPP----G 173
+ ++ C + + E+ P TC Y KA + +
Sbjct: 345 GSIQHINDRCMEMQKNKHEKQHQEDGAKRKRGPAKSTCP----YNKAPALQRMRDEILGA 400
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP---KVAGIISKEMQKESV 230
V ++ L G + CPY+ AR + A +VV YQ LL + AG+ K V
Sbjct: 401 VQDIEQLLKLGSETRSCPYYSARLTIPPAQLVVLPYQMLLHEATRRAAGV----QLKGQV 456
Query: 231 VVFDEAHNIDNV--CIEALSVSVRRQTLEGAT--RNLSRINQEIERFKATDAGRLRAE 284
V+ DEAHN+ + CI + L GA R S++ Q RFK+ RL+A+
Sbjct: 457 VIIDEAHNLSDTLSCIYSAE-------LTGAQLCRAHSQLTQYTHRFKS----RLKAK 503
>gi|195420017|ref|XP_002060746.1| GK24077 [Drosophila willistoni]
gi|194156831|gb|EDW71732.1| GK24077 [Drosophila willistoni]
Length = 297
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 97/176 (55%), Gaps = 4/176 (2%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRDCICPMVLTRGSDQLPVSTKFD 509
+SV++TSGTL+P L P + V++ + + + + ++ G D+ + F
Sbjct: 10 RSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQSQVYVKIIGTGPDRQQFISSFK 67
Query: 510 MRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFI 569
R +P + G+ ++ + IVPDG++ FF SY +++ + W SG+ +I K +F+
Sbjct: 68 NRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKCVDAWQTSGLWADIAAKKPIFL 127
Query: 570 ETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
E + + T ++ + +A +GA F +V RGKV+EG+DF GR VI+ G+P+
Sbjct: 128 EPRGKDQFTTTMEEFYQAIRDSKGACFMAVCRGKVSEGLDFADRNGRAVIIAGLPY 183
>gi|301097939|ref|XP_002898063.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262105424|gb|EEY63476.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 622
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 116/562 (20%), Positives = 219/562 (38%), Gaps = 101/562 (17%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
P K+ +C+RT ++ + + ELK R + + ++ + L+ ++ LCVN V N
Sbjct: 135 PPKIFFCSRTHSQLTQAVNELKDCPASYMRAIPGSTELRSCVLAVKRLLCVNEDV----N 190
Query: 127 RDS--VDAACRK-RTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAF 183
+ V+ C++ R R +A + C++ N + P V+ ++D+
Sbjct: 191 SEPMLVNEKCQELRMEKERRRMAGDEEGEGGCKY--NQTSFSELRAQSPQVWDIEDITKL 248
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
C YF ++ ++ A++V Y Y+LDP + + + S+VV DEAHN+++ C
Sbjct: 249 ASTCEECAYFFSKSKLETAHIVFCPYNYILDPAIRKAVGITLHN-SIVVLDEAHNVEDTC 307
Query: 244 IEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADA 303
S+ + L A ++ + D G Y+ A+R L +
Sbjct: 308 RSGASLEITDNMLGRAIKSFDDV------IWQGDEGFQPPAYD------AVRRMLSSVET 355
Query: 304 WLSNPALPSDILKEAVPG-NIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASIT 362
W + + LK A PG + + L+ RL+
Sbjct: 356 WFAVNEELHEQLKLATPGKKVLLSNSALNTATRLIS------------------------ 391
Query: 363 AHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFD 422
+ + M + + D DF L+ R +
Sbjct: 392 ----------------VATYMFSDNCKNAD---------DFKLLITKKMR--------VN 418
Query: 423 ERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFH-PVVSRSF 481
+ I D L + C A++ V SV++ SGTLSP++ + L P+ +
Sbjct: 419 DEGEEIIDTKLCIWCLSAAVVFAEVARNSHSVILASGTLSPMNSFAGELGVDFPIRLEAN 478
Query: 482 KMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVS 541
+ R + L G + + + + + + + G LL++ ++P GI+ FF S
Sbjct: 479 HVVNMRKQVFVGALMNGPGGVDLLSTYKNQQNFQYQDSMGYLLLQYAQMIPGGILMFFPS 538
Query: 542 YSYMDEIIATWNDSGILKEIMQHKLVFIETQ----------DVVETTLALDNYRKACDCG 591
Y+ + + A W +GI ++++HK +F E + D + ++A + G
Sbjct: 539 YALLGILKARWERTGIWAKLVKHKKMFSEPRQGGKFFDELLDKYKNSIARHAASQDAPSG 598
Query: 592 ----------RGAVFFSVARGK 603
GA+F +V RGK
Sbjct: 599 WMNDNAEPRETGAIFLAVYRGK 620
>gi|168063226|ref|XP_001783574.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664903|gb|EDQ51606.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 858
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 111/242 (45%), Gaps = 17/242 (7%)
Query: 400 ICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSG 459
+ DF + + +++ P + + D L+ +A+ + + ++V++ G
Sbjct: 481 LADFVLALTNADKDGRVLVVPSVGKGLELWDGHLKFIMLNATKHFTEIVEEARTVILAGG 540
Query: 460 TLSPID-----LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDP 514
TL PI L+P+L + V S + R+ I P+ + +G + RS
Sbjct: 541 TLQPISELRDRLFPQLPH-EKVHLFSCGHIVPRESILPIAIAKGPGGHTFDFTYQSRSCQ 599
Query: 515 GVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV 574
G+L+ + SIVP+GIV FF S+ Y ++ ATW D GIL I K V+ E +
Sbjct: 600 TTIEELGRLINNVSSIVPEGIVVFFPSFEYESQVHATWTDKGILASIQMKKHVYREPRSA 659
Query: 575 VETTLALDNYRKA-----------CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
E L YR + + RGA+ V GK++EGI+F GR V+M G+
Sbjct: 660 SEVEDVLQKYRNSITKTSDKADITTENRRGALLLCVVGGKMSEGINFSDGMGRCVVMVGL 719
Query: 624 PF 625
P+
Sbjct: 720 PY 721
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 114/235 (48%), Gaps = 31/235 (13%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVN-SRVLAAE 125
P+K+ +C+RT ++ + + ELK +T+ A + + L SRK LC+N + V +
Sbjct: 154 PLKVFFCSRTHSQLSQFVGELK-----RTKF---ATSLQTVSLGSRKTLCINPADVAKLK 205
Query: 126 NRDSVDAAC----RKRTASWVRALAAENPNIET-------CEFF--ENYEKAASAAVLPP 172
+ + ++ C + +++ + A ++ ++ C + ++ +
Sbjct: 206 SSERINERCLELHKAKSSGQAGSKAVKDNQMQKRKVKSSGCPMLKKQRLQRQFKEKLELS 265
Query: 173 GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
G ++DL G++ G CPY+ +R V A+VVV YQ LL + ++ K+ V++
Sbjct: 266 GAMDVEDLVKLGQELGTCPYYGSRRAVPAADVVVLPYQSLLHSATRETLGVKL-KDCVII 324
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNR 287
DEAHN+ + S V L+ + S++++ +E+FK RL AE NR
Sbjct: 325 IDEAHNLVDTVSNIYSCQVSVTQLKQVS---SQLSEYLEKFK----NRL-AESNR 371
>gi|205716435|sp|A8MPP1.1|D11L8_HUMAN RecName: Full=Putative ATP-dependent RNA helicase DDX11-like
protein 8; AltName: Full=DEAD/H box protein 11-like 8
Length = 907
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 14/192 (7%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 611 VVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNI-PLVICSGIS 669
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
P+ F R P + G++L + +V G+VCFF SY Y+ ++ A W G+L
Sbjct: 670 NQPLEFTFQKRDLPQMMDEVGRILCNLCGVVSGGVVCFFSSYEYLRQVHAHWEKGGLLGR 729
Query: 561 IMQHKLVFIE---TQDVVETTLALDNYRKACDCGRG----AVFFSVARGKVAEGIDFDRH 613
+ K +F E V + LA +AC RG A+ SV GK++EGI+F +
Sbjct: 730 LAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTEALLLSVVGGKMSEGINFSDN 789
Query: 614 YGRLVIMFGVPF 625
GR V+M G+PF
Sbjct: 790 LGRCVVMVGMPF 801
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ +C+RT ++ + +H + G +++++G SR+NLCVN V + +
Sbjct: 229 TKIYHCSRTHSQL------AQFVHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVRSLGSV 280
Query: 128 DSVDAAC----RKRTASWVRALAA-----ENPNIETCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R A C F+ + + V ++
Sbjct: 281 QLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDME 340
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DEAHN
Sbjct: 341 QLLALGKEARACPYYRSRLAIPAAKLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDEAHN 399
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + SV V L A S++ Q +ER+ RL+A+
Sbjct: 400 LIDTITGMHSVEVSGSQLCQAH---SQLLQYMERY----GKRLKAK 438
>gi|441639260|ref|XP_004090200.1| PREDICTED: LOW QUALITY PROTEIN: regulator of telomere elongation
helicase 1 [Nomascus leucogenys]
Length = 1342
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 145/338 (42%), Gaps = 75/338 (22%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VT+ FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTIDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERVQGELFPDRALSSWGNAAAAAGDPIGXYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELK----------LLHNYQTRHLGPA------AKILAIGLSSRKNLCVNSRVLAAENRDS 129
EL+ L +T GP K+ +G SR+ LC++ V E+
Sbjct: 125 ELRNTSYRSHCGTTLWLLETAPPGPTVLSPTRPKVCVLG--SREQLCIHPEVKKQESNHI 182
Query: 130 VDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGW 189
CRK+ AS +C F+ N E+ L + ++DL G +
Sbjct: 183 QIHLCRKKVAS------------RSCHFYNNVEEKGLEQELASPILDIEDLVKNGSKHRV 230
Query: 190 CPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSV 249
CPY+L+R++ Q A+++ Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S
Sbjct: 231 CPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASF 289
Query: 250 SVRRQTLEGATRNLSRINQEI-ERFKATDAGRLRAEYN 286
+ L L I+Q + E+ K G+ E++
Sbjct: 290 DLTPHDL---ASGLDVIDQVLEEQTKMAQQGKPHPEFS 324
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 497 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 556
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 557 FSEECLSSLGKALGNIARVVPCGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 616
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 617 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 672
>gi|410963605|ref|XP_003988355.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein 8
[Felis catus]
Length = 907
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+V+ G
Sbjct: 610 VVKECRAVVIAGGTMQPVSDFREQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGPS 669
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCFF SY Y ++ A W+ SG+L
Sbjct: 670 SQQLEFTYQKRELPQMMDETGRILYNLCNVVPGGVVCFFPSYEYQRQVHAHWDKSGLLAR 729
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACDCG-------RGAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y + C GA+ SV GK++EGI+F
Sbjct: 730 LAVRKKIFQEPKRANQVEQVLLEYSRCIKCCGHAGGAVTGALLLSVVGGKMSEGINFSDD 789
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 790 LGRCVVMVGMPY 801
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 21/221 (9%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G +++++G SR+NLC+N V +
Sbjct: 227 TKIYYCSRTHSQL------AQFVHEVQRSPFGKDTRLVSLG--SRQNLCINEDVKNLGSA 278
Query: 128 DSVDAAC----RKRTASWVRALAAENP------NIETCEFFENYEKAASAAVLPPGVYTL 177
++ C R + RA E P + C F+ + + GV +
Sbjct: 279 QLINDRCMEMQRSKHGKKSRA-EDEKPKRRRQEHQAACPFYSYEQLQLLRDEVLVGVKDI 337
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+ L + GK+ CPY+ +R + A +VV YQ LL +Q + VVV DEAH
Sbjct: 338 EQLVSLGKEARACPYYGSRFAIPAAQLVVLPYQMLLHGATRQAAGIRLQGQ-VVVIDEAH 396
Query: 238 NIDNVCIEALSVSVR-RQTLEGATRNLSRINQEIERFKATD 277
N+ + S V Q + ++ L + + +R KA +
Sbjct: 397 NLIDTITGIYSAEVSGSQFCQAHSQLLQYMERYGKRLKAKN 437
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 6 EDVTVYFPYD-NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
ED ++FP+ Y Q +M EL R LDA + E PTGTGK+++L+ S++
Sbjct: 7 EDGGIHFPFPFTPYSIQKDFMAELYRVLDAGKIGIFESPTGTGKSLSLICGALSWL 62
>gi|307202440|gb|EFN81860.1| Fanconi anemia group J protein [Harpegnathos saltator]
Length = 293
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 20/207 (9%)
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP 492
L+L C + ++ +P+ +SV++ SGTL+P +F + F L + I P
Sbjct: 2 LKLVCMNPAVVFEPLSRITRSVILASGTLAPTS------SFESELGTRFPHKLHANHIIP 55
Query: 493 M------VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
+ RG + + + + GKL+V++ +P G++CFF SYS M+
Sbjct: 56 REQVYVRCIPRGPNGESLLANYKNVNSWSFQDELGKLIVQVCDAIPYGVLCFFSSYSAMN 115
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYR--------KACDCGRGAVFFS 598
+I W D GI ++ + K +F+E ++ E + YR K+ GA+ F+
Sbjct: 116 KIHMRWKDIGIWAKLAELKEIFVEPKENRELPEIMREYREVIKESSSKSFRERSGAILFA 175
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPF 625
V RGKVAEGIDF + R V+ G+PF
Sbjct: 176 VFRGKVAEGIDFSDNEARCVLTVGIPF 202
>gi|449529467|ref|XP_004171721.1| PREDICTED: regulator of telomere elongation helicase 1-like,
partial [Cucumis sativus]
Length = 695
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 8/181 (4%)
Query: 453 SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
S+++TSGTLSP+D + + L + ++ + I V++ G ++ + R
Sbjct: 436 SIILTSGTLSPLDSFAQELKLDFPIRLENPHVISSNQIWAGVVSVGPSGCSFNSSYWNRE 495
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG------ILKEIMQHKL 566
+ G +V IVPDG++ FF SY ++D+ I+ W + I + I +HK
Sbjct: 496 SEAYKLDLGNAIVNFARIVPDGLLVFFPSYYFLDQCISCWKNQSLSSSTTIWERISKHKK 555
Query: 567 VFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
IE + ++++Y + GAVFF+V RGKV+EG+DF H GR VI+ G+P
Sbjct: 556 PVIEPRQSSLFPSSIEDYMFKLEDTSSSGAVFFAVCRGKVSEGLDFADHAGRAVIITGMP 615
Query: 625 F 625
F
Sbjct: 616 F 616
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 68/283 (24%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--- 59
+ + + V FP+D Y Q YM ++ ++L K + LLE PTGTGKT+ LL ++
Sbjct: 4 YTIRGIDVDFPFD-AYDCQLVYMEKVIQSLQEKCNALLESPTGTGKTLCLLCATLAWRKS 62
Query: 60 ---------------------VLS----KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ 94
VLS P++P ++Y TRT ++ + + ELK +Y+
Sbjct: 63 LGEFSSGRSVSNSQNIEGDPNVLSSQSTSPKHPT-IVYTTRTHSQLRQVIQELKKT-SYR 120
Query: 95 TRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAA---CRK------RTASWVRAL 145
+ + L SR+ LC++ V R +A CRK + + V
Sbjct: 121 PK---------MVVLGSREQLCIHEDVSLLRGRTQNNACRSLCRKSGKRHCKHYNRVSGY 171
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
ENP+ L ++DL GK G CPY+++R + + +++
Sbjct: 172 VKENPH------------------LGDEPIDIEDLVKIGKSFGPCPYYVSRELHKAVDIM 213
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
Y YL+D + E K SV++FDEAHN++++C +A S
Sbjct: 214 FAPYNYLIDRGYRKSLVLEW-KNSVLIFDEAHNLESICADAAS 255
>gi|440803958|gb|ELR24841.1| DEAD/H (AspGlu-Ala-Asp/His) box polypeptide 11, putative
[Acanthamoeba castellanii str. Neff]
Length = 1005
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 26/200 (13%)
Query: 452 QSVVITSGTLSPI-DLYPRLLNFHPVVSRSFKMSLT--RDCICPMVLTR----------G 498
++VV+ GT+ PI DL +L V K L R C V+T G
Sbjct: 648 RAVVLAGGTMHPIPDLVFQLFGPEAEVPEPIKPKLVGLRSFSCGHVITSESLLTLCVGSG 707
Query: 499 SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGIL 558
+P + RS + G+L++ M ++VPDG+V FF SY Y ++I+TW SG+L
Sbjct: 708 PSDVPFDFAWQNRSSAAMIEELGRLVLNMCNLVPDGVVMFFPSYHYEQQVISTWETSGML 767
Query: 559 KEIMQHKLVFIETQDVVETTLALDNYRKACDCG-------------RGAVFFSVARGKVA 605
+I K V E + L+ Y+ A D RGA+ +V GK++
Sbjct: 768 AKINARKKVLREPRAASMIGQVLEEYKDAIDANFTPTGAAASTSRQRGAILSAVVGGKMS 827
Query: 606 EGIDFDRHYGRLVIMFGVPF 625
EGI+F GR V+M G+P+
Sbjct: 828 EGINFSDGLGRCVVMVGLPY 847
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 51/224 (22%)
Query: 101 AAKILAIGLSSRKNLCVNSRV--------------------------LAAENRDSVDAAC 134
A ++ + L SRKNLCVN++V + E+ + A
Sbjct: 254 ADRMRVVTLGSRKNLCVNAKVKRSPQKLSSVGAINDRCLDMQKQKTLVTGEDIPGLSYAA 313
Query: 135 RKRTA----SWVRALAAENPN----------IETCEFFENYEKAASAAVLPPGVYTLQDL 180
R RTA S + + E N + CE++E + + V +++L
Sbjct: 314 RTRTAHAILSNIPFITTEEENMFGKAKKSVVLSKCEWYEQSSQKLYRDHVLLKVRDIEEL 373
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
G++Q CPY+ R V VV Y LL + ++ K ++VV DEAHN+
Sbjct: 374 VQLGEKQRACPYYGTRAAVPSVEVVALPYNMLLHRATRESLGVDL-KGNIVVVDEAHNLV 432
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ E S + L + ++++++A RL+A+
Sbjct: 433 DAINEMYSTQL----------TLRQAESQLDQYRARYQNRLKAK 466
>gi|414881660|tpg|DAA58791.1| TPA: hypothetical protein ZEAMMB73_410850, partial [Zea mays]
Length = 941
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 11/205 (5%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
L C + LA++ +S+++TSGTLSP+D LN V ++ D +
Sbjct: 431 TLSWWCFNPGLAMEEFLKLGVRSIILTSGTLSPLDSLAMELNLEFPVRLENPHVISSDQV 490
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
V+ G +++ + R+ + G +V IVPDG++ FF SYS MD +
Sbjct: 491 WVGVVPVGPSGHALNSSYRTRNTIQYKQELGTAIVNFARIVPDGLLVFFPSYSMMDMCVD 550
Query: 551 TW---------NDSGILKEIMQHKLVFIETQDVVETTLALDNYR-KACDCGRGAVFFSVA 600
W +++ I + I +HK IE + A+++YR K D GA+FF+V
Sbjct: 551 FWKNRNHSNSASENTIWQRICKHKQPVIEPRQSSNFQSAIEDYRAKLHDSSSGAIFFAVC 610
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPF 625
RGKV+EG+DF GR VI+ G+PF
Sbjct: 611 RGKVSEGLDFADRAGRAVIVTGMPF 635
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 128/288 (44%), Gaps = 68/288 (23%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL--SLI--- 56
++ + V V FP+D Y Q +YM + +L + LLE PTGTGKT+ LL SL
Sbjct: 3 VYSIRGVNVDFPFD-AYDCQITYMDRVIESLQQGKNALLESPTGTGKTLCLLCASLAWRR 61
Query: 57 ---------------------------------TSYVLSKPENPVKLIYCTRTVHEMEKT 83
TS + PV +IY +RT ++ +
Sbjct: 62 TFGEFLRVGRGGGGTKQLPYGSQPSASQQSEDSTSQKQQQSRYPV-IIYASRTHSQLRQV 120
Query: 84 LAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAA---CRKRTAS 140
+ ELK +Y+ + +A+ L SR+ +C++ V R +A C+KR
Sbjct: 121 IKELKAT-SYRPK--------MAV-LGSREQMCIHDEVSKLHGRAQNNACHFLCKKRRCP 170
Query: 141 WVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQ 200
N EF +N + + + ++DL G+ +G CPY+++R + +
Sbjct: 171 H---------NNHVAEFIKNKPELGNEP------FDIEDLINIGRHKGPCPYYISRELSK 215
Query: 201 FANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
+++ Y YL+DP ++ +V++FDEAHN++++C +A S
Sbjct: 216 SVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLESICADAAS 263
>gi|431894622|gb|ELK04422.1| Regulator of telomere elongation helicase 1 [Pteropus alecto]
Length = 1198
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 130/285 (45%), Gaps = 67/285 (23%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY----- 59
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL ++
Sbjct: 6 LNGVTVDFPF-QPYKCQEEYMAKVLECLQKKVNGVLESPTGTGKTLCLLCTTLAWREHLR 64
Query: 60 -VLSK------------PENPV--------------------KLIYCTRTVHEMEKTLAE 86
LS P+ P+ K+IY +RT ++ + ++E
Sbjct: 65 DALSAHKIAERAQGELFPDRPLSSWGSAASDRDAPACYADIPKVIYASRTHSQLTQVISE 124
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
L+ N R ++ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 LR---NTAYR-----PRVCVLG--SREQLCIHPEVKKQESSHMQIHLCRKKVAS------ 168
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
+C F+ N E+ + L + ++DL G + CPY+LAR++ Q A++V
Sbjct: 169 ------RSCHFYNNVEEKSLEQELATPILDIEDLVKSGNKHRLCPYYLARNLKQQADIVF 222
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI-----DNVCIEA 246
Y YLLD K S ++ K +VV+FDEAHN+ + VC+ +
Sbjct: 223 MPYNYLLDAKSRRAHSIDL-KGTVVIFDEAHNVPPAPRNTVCLRS 266
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 3/200 (1%)
Query: 429 PDPVLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTR 487
P VL C +++ V +++++TSGTL+P+ + + VS + +
Sbjct: 460 PGKVLSYWCFSPGYSMRELVRQGVRTLILTSGTLAPVSSFALEMQIPFPVSLENPHVIDK 519
Query: 488 DCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDE 547
I ++ +G D +S+ FD R + GK L + +VP G++ FF SY M++
Sbjct: 520 HQIWVGIVPKGPDGTQLSSAFDKRFSDECLSSLGKALGNIARVVPHGLLVFFPSYPVMEK 579
Query: 548 IIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKAC--DCGRGAVFFSVARGKVA 605
+ W ++ K +F+E + + + Y + RGA F +V RGK +
Sbjct: 580 SLEFWRARDFASKLEALKPLFVEPRSKAGFSEVIGAYYTSVIRPGSRGAAFLAVCRGKAS 639
Query: 606 EGIDFDRHYGRLVIMFGVPF 625
EG+DF GR V++ G+P+
Sbjct: 640 EGLDFADMNGRGVVVTGLPY 659
>gi|198421637|ref|XP_002120480.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 1008
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 123/272 (45%), Gaps = 50/272 (18%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY----- 59
+ + V FP+ Y Q SYM ++ +AL+ + LE PTGTGKT+ LL ++
Sbjct: 6 IHGIKVEFPF-TAYEVQKSYMTKVIQALNTHQNAALESPTGTGKTLCLLCSTLAWRRQHL 64
Query: 60 -VLSKPENPV--------------------KLIYCTRTVHEMEKTLAELKLLHNYQTRHL 98
L K NPV K+IY +RT ++ + + ELK
Sbjct: 65 NELKKHTNPVSQEDAWSSSEKSKDSAIPAPKIIYASRTHSQISQVVKELKRT------DY 118
Query: 99 GPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFF 158
G I +G SR+ +C++ V + ++ CR + N TC+F+
Sbjct: 119 GKDITISILG--SREQMCIHPEVSKQTSNQAMVHMCRGKI------------NKHTCQFY 164
Query: 159 ENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF--ANVVVYSYQYLLDPK 216
N E A + V +++L GK + CPY+ R + + ++ Y YLLD K
Sbjct: 165 NNVEDAKKNNIFTTKVMDIEELVTVGKSRTVCPYYSEREVSKQNECGIIFTPYNYLLDRK 224
Query: 217 VAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
+ E+ + ++V+FDEAHN++ +C E+ S
Sbjct: 225 SRATNNLEI-RGNIVIFDEAHNLEKLCEESTS 255
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 2/175 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+++++TSGTLSP++ + L ++ + + + + LT G +++ F R
Sbjct: 467 RNLILTSGTLSPLESFTSELQIDFPITLENDHVIDKHQVFVITLTHGKKGGLLNSTFKTR 526
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN-DSGILKEIMQHKLVFIE 570
D + G + +M++ P G + FF SYS M E + W +S ++ + + K +E
Sbjct: 527 KDVNQVQELGLTVADMIAAAPGGALVFFPSYSAMAEYLTIWKENSNVMTLVEKVKPCTVE 586
Query: 571 TQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
++ E A+D Y + G G F +V RGKV+EG+DF GR VI+ G+P+
Sbjct: 587 PKNKHELRTAIDKYYTDVNTG-GGTFLAVCRGKVSEGLDFSDDNGRTVIIVGIPY 640
>gi|351714866|gb|EHB17785.1| Regulator of telomere elongation helicase 1, partial
[Heterocephalus glaber]
Length = 1184
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 133/306 (43%), Gaps = 66/306 (21%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY----- 59
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL ++
Sbjct: 6 LNGVTVDFPFQP-YQCQQEYMSKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLW 64
Query: 60 ---------------------------VLSKPENPV-------KLIYCTRTVHEMEKTLA 85
+ P+ K+IY +RT ++ + +
Sbjct: 65 DTVSARKIAERAQGELFLDQALSAWGSATAADGEPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRAL 145
EL R+ ++ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 EL--------RNTAYRPRVCVLG--SREQLCIHPEVKKQESNHMQIHLCRKKVAS----- 169
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++
Sbjct: 170 -------RSCHFYNNVEEKSLEQELVTPILDIEDLVKNGSKHKVCPYYLSRNLKQQADII 222
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + T L
Sbjct: 223 FMPYNYLLDAKSRKAHNIDL-KGTVVIFDEAHNVEKMCEESASFDL---TPHDVASGLDA 278
Query: 266 INQEIE 271
I Q +E
Sbjct: 279 IGQVLE 284
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
++V++TSGTL+P+ + + V + + + V+ RG D +S+ FD R
Sbjct: 467 RTVILTSGTLAPLSSFVLEMQIPFPVCLENPHVIDKHQLWVGVIPRGPDGAELSSAFDKR 526
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M+ +A W + +++ K +F+E
Sbjct: 527 FSEECLSSLGKTLGNIARVVPHGLLVFFPSYPVMENSLAFWRARDLARKVEVLKPLFVEP 586
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + +D Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 587 RSKGSFSEVIDAYYQRVASPGSSGATFLAVCRGKASEGLDFSDINGRGVIITGLPY 642
>gi|449448190|ref|XP_004141849.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Cucumis sativus]
Length = 1054
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 8/181 (4%)
Query: 453 SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
S+++TSGTLSP+D + + L + ++ + I V++ G ++ + R
Sbjct: 436 SIILTSGTLSPLDSFAQELKLDFPIRLENPHVISSNQIWAGVVSVGPSGCSFNSSYWNRE 495
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG------ILKEIMQHKL 566
+ G +V IVPDG++ FF SY ++D+ I+ W + I + I +HK
Sbjct: 496 SEAYKLDLGNAIVNFARIVPDGLLVFFPSYYFLDQCISCWKNQSLSSSTTIWERISKHKK 555
Query: 567 VFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
IE + ++++Y + GAVFF+V RGKV+EG+DF H GR VI+ G+P
Sbjct: 556 PVIEPRQSSLFPSSIEDYMFKLEDTSSSGAVFFAVCRGKVSEGLDFADHAGRAVIITGMP 615
Query: 625 F 625
F
Sbjct: 616 F 616
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 68/283 (24%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--- 59
+ + + V FP+D Y Q YM ++ ++L K + LLE PTGTGKT+ LL ++
Sbjct: 4 YTIRGIDVDFPFD-AYDCQLVYMEKVIQSLQEKCNALLESPTGTGKTLCLLCATLAWRKS 62
Query: 60 ---------------------VLS----KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ 94
VLS P++P ++Y TRT ++ + + ELK +Y+
Sbjct: 63 LGEFSSGRSVSNSQNIEGDPNVLSSQSTSPKHPT-IVYTTRTHSQLRQVIQELKKT-SYR 120
Query: 95 TRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAA---CRK------RTASWVRAL 145
+ + L SR+ LC++ V R +A CRK + + V
Sbjct: 121 PK---------MVVLGSREQLCIHEDVSLLRGRTQNNACRSLCRKSGKRHCKHYNRVSGY 171
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVV 205
ENP+ L ++DL GK G CPY+++R + + +++
Sbjct: 172 VKENPH------------------LGDEPIDIEDLVKIGKSFGPCPYYVSRELHKAVDIM 213
Query: 206 VYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
Y YL+D + E K SV++FDEAHN++++C +A S
Sbjct: 214 FAPYNYLIDRGYRKSLVLEW-KNSVLIFDEAHNLESICADAAS 255
>gi|241623164|ref|XP_002407529.1| CHL1 protein, putative [Ixodes scapularis]
gi|215501004|gb|EEC10498.1| CHL1 protein, putative [Ixodes scapularis]
Length = 429
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 6/187 (3%)
Query: 445 KPVFDRFQSVVITSGTLSPID------LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRG 498
K V + ++V++ GT+ P L P + ++ + + + +C + L++G
Sbjct: 136 KDVVSQARAVILAGGTMEPTSEFVDQLLIPAGVPPERILHFACGHVVPKSNLCALALSQG 195
Query: 499 SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGIL 558
+ + R+D R G LL+ + +VP G+VCFF SY Y + W SG+L
Sbjct: 196 PSGKTLEFTYQNRADVETIRELGNLLINVARVVPGGVVCFFPSYEYEKVVSEKWKSSGLL 255
Query: 559 KEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLV 618
+++ K +F E E L Y + GA+ F+V GK++EGI+F GR V
Sbjct: 256 EKLAARKPIFREPVKSSELEKMLALYGQCAKSSTGALLFAVVGGKMSEGINFSDDMGRCV 315
Query: 619 IMFGVPF 625
+M G+PF
Sbjct: 316 VMVGLPF 322
>gi|449482368|ref|XP_002193292.2| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Taeniopygia guttata]
Length = 913
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL---NFHP--VVSRSFKMSLTRDCICPMVLTRGSD 500
V + ++V+I GT+ P+ D +LL P +V S + + I P++L G
Sbjct: 597 VVEECRAVIIAGGTMQPVADFREQLLCRAGVDPARIVEFSCGHVIPPENILPIILCSGPS 656
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + +++P G+VCFF SY Y ++ W +G+L
Sbjct: 657 NQQLEFTYQTRDLPQMMDETGRILSNLCNVIPGGVVCFFPSYEYEKQVYGHWEKTGLLSR 716
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACDC-----GR--GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y K C G+ GA+ SV GK++EGI+F
Sbjct: 717 LASKKKIFQEPKKANQVEQVLVEYAKCIKCCSQTGGQMTGALLLSVVGGKMSEGINFSDD 776
Query: 614 YGRLVIMFGVPF 625
GR VIM G+P+
Sbjct: 777 LGRCVIMVGMPY 788
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 50/208 (24%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV--LAA- 124
K+ YC+RT ++ + +H Q G +++++G SR+NLCVN V L A
Sbjct: 210 TKIYYCSRTHSQLSQ------FVHEVQKSPFGKNIRLVSLG--SRQNLCVNEEVRRLGAL 261
Query: 125 ---------------ENRDSVDAACRKRTASWVRALAAENPNIETCEF--FENYEKAASA 167
E + S + +KR S RA+ C F FE +
Sbjct: 262 QLINDRCMEMQKNKHEKKSSEENEGKKRRVS--RAM---------CPFYSFEQMQFLRDE 310
Query: 168 AVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLL-DP--KVAGIISKE 224
++ V ++ L + G++ CPY+ +R + A +VV YQ LL +P AGI
Sbjct: 311 VLVE--VKDIEQLVSLGRETKACPYYGSRFAIPAAQLVVLPYQMLLHEPTRNAAGI---- 364
Query: 225 MQKESVVVFDEAHN-IDNV-CIEALSVS 250
K+ VV+ DEAHN ID + CI + VS
Sbjct: 365 KLKDQVVIIDEAHNLIDTITCIHSAEVS 392
>gi|395538820|ref|XP_003771372.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein 8
[Sarcophilus harrisii]
Length = 901
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 95/200 (47%), Gaps = 13/200 (6%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICP 492
+ S+ V ++++I GT+ P+ D +LL VV S + D I P
Sbjct: 601 NPSVHFAQVVKECRAMIIAGGTMQPVADFREQLLECAGVGTERVVEFSCGHVIPPDNILP 660
Query: 493 MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW 552
+VL G + + R P + G++L + ++VP G+VCFF SY Y+ +I A W
Sbjct: 661 IVLCSGPSNQQLEFIYQKRELPQMMDEVGRILCNLCNVVPGGLVCFFSSYDYLHKIHAHW 720
Query: 553 NDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVA 605
SG+L + K +F E + L Y K C + GA+ SV GK++
Sbjct: 721 KQSGLLTRLAVKKKIFQEPNRANQVEQVLTEYSKCIKRCSQVKGVMTGALLLSVVGGKMS 780
Query: 606 EGIDFDRHYGRLVIMFGVPF 625
EGI+F GR V+M G+P+
Sbjct: 781 EGINFSDDLGRCVVMVGMPY 800
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 24/217 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + + E+ Q G +++++G SR+NLCVN V +
Sbjct: 225 TKIYYCSRTHSQLTQFVREV------QKSPFGKETRLVSLG--SRQNLCVNEEVKRLGSA 276
Query: 128 DSVDAAC--------RKRTASWVRALAAENPNIETCEFFENYEKAA--SAAVLPPGVYTL 177
++ C K+ +A + +C F+ NYE+ VL V +
Sbjct: 277 TLINDRCLEMQKSKHEKKNKEDEKAKKRKTETHTSCPFY-NYEQMQFLRDEVLME-VKDI 334
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+ L GK+ CPY+ +R + A +VV YQ LL ++Q + VV+ DEAH
Sbjct: 335 EQLVVLGKETHACPYYGSRFAIPSAQLVVLPYQMLLHAATRHAAGIKLQGQ-VVIIDEAH 393
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
N+ + S V L A S+++Q +ER++
Sbjct: 394 NLIDSITSIHSAEVNGSQLCQAH---SQLSQYMERYR 427
>gi|68069879|ref|XP_676851.1| DNA repair helicase [Plasmodium berghei strain ANKA]
gi|56496730|emb|CAH94015.1| DNA repair helicase, putative [Plasmodium berghei]
Length = 939
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 110/212 (51%), Gaps = 10/212 (4%)
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVF-DRFQSVVITSGTLSPIDLYPRLLN-----FH 474
+D + + + L C A+ ++ + ++ S+++TSGTLSP++ + + L+ FH
Sbjct: 352 YDNQNNYTMSKTISLLCFSATASLCGIIKEKVNSIIVTSGTLSPVEPFSKQLSGSYFSFH 411
Query: 475 PVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDG 534
++ + + + M T ++QL +ST ++ RS+ + G + ++++ +P G
Sbjct: 412 HILENDHVIKSHQLFVGCM--THYNNQLLLST-YENRSNENYIKALGNCIFDVIAYIPFG 468
Query: 535 IVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR-G 593
++ FF SYS M E +ATW I +I +K +F+E + L Y R G
Sbjct: 469 VLIFFSSYSSMTETVATWKKLKIFDKINSYKTIFVEPNKAADLKDILFQYENIIKKKRKG 528
Query: 594 AVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
A+ V RGK++EGIDF R VI+ G+P+
Sbjct: 529 AILMGVCRGKISEGIDFKDDCCRGVIICGLPY 560
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 171 PPGVYTLQDL----RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ 226
P TL ++ + G+ +CP++ R + +V++ Y YL + I+ +++
Sbjct: 80 PMDAETLNEMGKGNNSVGQNIHFCPFYATREIQNECHVILLPYNYLFEENTRRILKLDLE 139
Query: 227 KESVVVFDEAHNIDNVCIEALSVSVRRQTL 256
+++ DE HNI+NV EA+S +R L
Sbjct: 140 -NCIIIIDEGHNIENVAEEAVSFKIRDSDL 168
>gi|303289303|ref|XP_003063939.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454255|gb|EEH51561.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 770
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 20/207 (9%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLL--NFHPVVSR----------SFKMSLT 486
DA+ K V D ++VV+ GTLSPID R L + PV S+ S +
Sbjct: 482 DAAARFKSVVDESRAVVLVGGTLSPIDELARALFPSAAPVGSKIASETTLSSLSLGHVVP 541
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
++ + P+ + +G + F R V G+LL+ ++ P G+V FF S+ Y D
Sbjct: 542 KESLLPIAVGKGPGGVRFDFSFGKRDAFDVVDELGRLLINASAVTPGGVVVFFPSFKYAD 601
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDV-------VETTLALDNYRKACDCGR-GAVFFS 598
++ W +G + ++ +HK VF E + TT + N + G+ GAV
Sbjct: 602 DVYQRWVRTGAVGQLAKHKAVFREPRKARSPIHTGSRTTPSACNPKGGGGGGQTGAVMLC 661
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPF 625
V GK++EGI+F GRLVIM G+P+
Sbjct: 662 VCGGKLSEGINFKDDLGRLVIMVGLPY 688
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 21/188 (11%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
P ++I+C+RT ++ + + EL T GP + AI ++SR LCVN V +
Sbjct: 113 PTQVIFCSRTHSQLTQVVGELN-----STSFGGPEGTVNAIAIASRAQLCVNPEVRSVGV 167
Query: 127 RDS-VDAAC----RKRTASWVRALAAENPNIET--------CEFFENYEKAASAAVLP-- 171
++ ++ C + T + A +P C F +N A +
Sbjct: 168 SNARLNERCLELGKPTTTKSSSSATATDPATGKKKKKTAGGCPFLKNRRAAVAELADAAL 227
Query: 172 PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVV 231
++DL A G ++ CPY+ AR + A++V Y LL + + + K +VV
Sbjct: 228 SQPMDIEDLAALGVRRRACPYYAARRALPRADLVFAPYASLLHAETRESLGINL-KGAVV 286
Query: 232 VFDEAHNI 239
VFDEAHN+
Sbjct: 287 VFDEAHNL 294
>gi|443897877|dbj|GAC75216.1| helicase of the DEAD superfamily [Pseudozyma antarctica T-34]
Length = 1454
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 10/195 (5%)
Query: 441 SLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLNFHP---VVSRSFKMSLTRDCICPMVLT 496
S A K + D +SV++ GT+ P+ D +LL F P +V S + + VL
Sbjct: 587 SHAFKSLVDEARSVILAGGTMEPLSDFRQQLLPFLPRDKLVEFSCGHVIPPSNLMVSVLG 646
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND-- 554
LP KFD R++ + G+ L+ + ++ P G+V F SY+++D I+A W D
Sbjct: 647 SSPKGLPFEFKFDSRANAELIDELGRTLINLCNVAPAGLVVFVPSYAFLDRIMARWKDAA 706
Query: 555 SGIL-KEIMQHKLVFIETQDVVETTLALDNYRKAC-DCGR--GAVFFSVARGKVAEGIDF 610
SG L K + K +F E + +E L +Y A D G GA+ F+V K++EGI+F
Sbjct: 707 SGELHKRLGAKKKIFSEPKTTMEVDGVLQDYTAAIRDAGSAGGAIMFAVVGAKLSEGINF 766
Query: 611 DRHYGRLVIMFGVPF 625
R V+M G+PF
Sbjct: 767 SDDLARAVVMVGMPF 781
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 113/241 (46%), Gaps = 21/241 (8%)
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA-KILAIGLSSRKNLCVNSRV 121
+PE +++Y +RT ++ + +AELK + L P + I L SRK +C+N V
Sbjct: 216 EPETLPRVVYASRTHSQLSQFVAELKKTSFGEVDVLNPTDLPVRTIALGSRKQMCINESV 275
Query: 122 LAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP------PGVY 175
R +A +R ++A + C +++ A A +L V
Sbjct: 276 QHIARRKGTEA-MNERCLELMKAKKGK------CAALPSFDLAGRAQILEFRDAAMAQVG 328
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLL--DPKVAGIISKEMQKESVVVF 233
++DL G+ CPYF AR + A +V Y LL D + A IS E VV+
Sbjct: 329 DIEDLVQLGRDTKTCPYFAARTSAKQAELVTLPYNLLLQKDARQALGISLE---GCVVLI 385
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLVEGL 292
DEAHN+ + + SV++ + + ATR + + +++ R K ++ LR + +L+ G+
Sbjct: 386 DEAHNLIDTILGTHSVAIDSRQIAQATRQIDAYLDRFALRLKGSNEANLR-KVRKLLAGM 444
Query: 293 A 293
+
Sbjct: 445 S 445
>gi|125551293|gb|EAY97002.1| hypothetical protein OsI_18924 [Oryza sativa Indica Group]
Length = 877
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 19/189 (10%)
Query: 453 SVVITSGTLSPID-----LYPRLLNFHPVVSRSFKMS--LTRDCICPMVLTRGSDQLPVS 505
+V++ GTL PI+ L+P N P + F + + + I P+ +TRG
Sbjct: 554 AVILAGGTLQPIEETRLRLFP---NLPPSDIKFFTCNHIVPPESILPIAVTRGPSGKAFD 610
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
+ RS + G+ L +V+ VP+G+V FF SY Y + W SG++ +I + K
Sbjct: 611 FSYSSRSSHTMIEELGRFLCNVVTTVPEGVVMFFASYEYERFVYDAWAASGMISKISKKK 670
Query: 566 LVFIETQDVVETTLALDNYRKAC-DCGR--------GAVFFSVARGKVAEGIDFDRHYGR 616
VF E ++ V+ + L+ Y++A C + GA+ +V GK++EGI+F GR
Sbjct: 671 HVFREPKNSVDVEMTLNKYKEAIQSCSKSSQDTGVTGALLLAVVGGKISEGINFSDGMGR 730
Query: 617 LVIMFGVPF 625
V+M G+P+
Sbjct: 731 CVVMVGLPY 739
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 24/226 (10%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + +RT ++ + + ELK +T ++ + L SRKNLC+N VL + +
Sbjct: 193 KVFFTSRTHSQLSQFVGELK-----KTEF---GWRLRTVCLGSRKNLCINKDVLKLGSAN 244
Query: 129 SVDAACRK-RTASWVRALAAENPNIETCEFF----------ENYEKAASAAVLPPGVYTL 177
++ C + + + E N + C+ +K + V G +
Sbjct: 245 RINERCLELQKSKKSSKTKVEGDNRKVCQSKTSCGCPMIRKRGLQKEFKSEVSEQGALDI 304
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+DL GK+ G CPY+ AR MV+ A++VV YQ LL + + K SVV+ DEAH
Sbjct: 305 EDLAQLGKKIGTCPYYGARDMVRTADLVVLPYQSLLLKSARESLGLNL-KNSVVIIDEAH 363
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKAT-DAGRLR 282
N+ + + + L LS + + RF++ AG R
Sbjct: 364 NLADSLTSMYNSKITSSQLNAI---LSHLEAYLNRFQSVLGAGNRR 406
>gi|426227064|ref|XP_004007648.1| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase
DDX11-like protein 8-like [Ovis aries]
Length = 884
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 13/197 (6%)
Query: 447 VFDRFQSVVITSGTLSPIDLYPRLL------NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++V+I GT+ P+ + L VV S + D I P+++ G
Sbjct: 607 VVKECRAVIIAGGTMQPVSNFREQLLAGAGVEAERVVEFSCGHVIPPDHILPLIICSGPS 666
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCFF SY Y ++ A W SG+L
Sbjct: 667 NQMLDFTYQKRGLPQMMDETGRILCNLCNVVPGGVVCFFPSYEYQHQVCAHWEKSGLLAR 726
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + L Y + CG+ GA+ SV GK++EGI+F
Sbjct: 727 LTIRKRIFQEPKKANRVEQVLLEYSRCIKHCGQARGTETGALLLSVVGGKMSEGINFSDD 786
Query: 614 YGRLVIMFGVPFQYTLS 630
GR V+M G+P+ +S
Sbjct: 787 LGRCVVMVGMPYPNIMS 803
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 24/225 (10%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G +++++G SR+NLCVN V +
Sbjct: 224 TKIYYCSRTHSQL------AQFVHEVQKSPFGQDTRLVSLG--SRQNLCVNGDVRKLGSV 275
Query: 128 DSVDAAC--------RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
++ C +++ + C F+ + + GV ++
Sbjct: 276 QLINDRCVEMQRSKHERKSITEEEEPTRRRRRXAPCPFYSHERLQLLRDEVLAGVKDVEQ 335
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L A GK+ CPY+ R + A +VV YQ LL +Q + VVV DEAHN+
Sbjct: 336 LVALGKEARACPYYGGRFAIPAAQLVVLPYQMLLHAPTRQAAGIRLQGQ-VVVIDEAHNL 394
Query: 240 DNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ S+ VR L A S++ Q ER+ RL+A+
Sbjct: 395 IDTITNIHSMEVRGSQLCQAH---SQLLQYTERY----GKRLKAK 432
>gi|345490538|ref|XP_001606129.2| PREDICTED: regulator of telomere elongation helicase 1 homolog
[Nasonia vitripennis]
Length = 1111
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 103/201 (51%), Gaps = 21/201 (10%)
Query: 437 CHDASLAVKPVFDR-FQSVVITSGTLSP---------IDLYPRLLNFHPVVSRSFKMSLT 486
C ++ + D+ +SV++TSGTLSP I++ +L N H V ++
Sbjct: 459 CFSPGFGMQQLLDQGVRSVILTSGTLSPLKPFISEIGIEIGAQLENPHIVSNKQ------ 512
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
IC +++ G D +++ ++ R+DP + G+ + + I+P G++ FF SY M
Sbjct: 513 ---ICVGIISNGYDGCSLNSSYNTRNDPKYIASLGETIKILSCILPHGMLIFFPSYPIMK 569
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVE-TTLALDNYRKACD-CGRGAVFFSVARGKV 604
+ W G +I K +F+E Q + + Y+K D +GA+F +V RGKV
Sbjct: 570 KCQEEWQKMGKWSQIEASKPIFVEPQSKEGFNNVMTEYYKKIHDPAHKGAIFMAVCRGKV 629
Query: 605 AEGIDFDRHYGRLVIMFGVPF 625
+EG+DF GR V++ G+PF
Sbjct: 630 SEGLDFANANGRAVLITGLPF 650
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 123/294 (41%), Gaps = 70/294 (23%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK- 63
L V + FP+ Y Q YM ++ L + +LE PTGTGKT++LL +++ K
Sbjct: 6 LNGVVIKFPF-KPYQVQEDYMKKVIECLQEGKNGVLESPTGTGKTLSLLCSSLGWLMIKK 64
Query: 64 -----------------------------------------PENPV-----KLIYCTRTV 77
P N K+IY +RT
Sbjct: 65 AQIQIQVQSLGALDQVGSGNSYLDQFAKSLDKGGGKSTNQAPTNTFGWSMPKIIYASRTH 124
Query: 78 HEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKR 137
++ + + ELK RH+ L SR LC++ V +N + C+ +
Sbjct: 125 SQLSQAMQELK---RTSYRHVSVTV------LGSRDQLCIHPEVAKEQNTSNKIHMCQAK 175
Query: 138 TASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARH 197
+ A N C ++ N E + + ++DL G++ CPYFL++
Sbjct: 176 -------IKARN-----CFYYNNVELRKDDPTIKDNILDIEDLVKTGQKLKCCPYFLSKE 223
Query: 198 MVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSV 251
+ Q A+++ Y YLLDPK E+Q +VV+ DEAHN++ +C +A S+ +
Sbjct: 224 LKQNADIIFMPYNYLLDPKTRKNQGIELQ-NNVVLLDEAHNVEKMCEDAASLQI 276
>gi|297743289|emb|CBI36156.3| unnamed protein product [Vitis vinifera]
Length = 777
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 125/260 (48%), Gaps = 40/260 (15%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL 61
I+K+ + V FP++ Y Q YM ++ ++L + + LLE PTGTGKT+ LL ++
Sbjct: 3 IYKIRGIDVDFPFE-AYDCQLVYMEKVIQSLQERCNALLESPTGTGKTLCLLCATLAWRK 61
Query: 62 SKPE------NPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNL 115
+ P N +IY +RT ++ + + ELK +Y+ + + L SR+ L
Sbjct: 62 NVPHSQSAKTNLPTIIYASRTHSQLRQVIQELKRT-SYRPK---------MVVLGSREQL 111
Query: 116 CVNSRVLAAENRDSVDAA---CRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP 172
C++ V R +A CRKRT + +Y + + P
Sbjct: 112 CIHEEVSLLRGRAQTNACHSLCRKRTKK---------------GYCGHYSRVSDFMKYNP 156
Query: 173 GV----YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
G+ ++DL G+ G CPY+++R + + +++ Y YL+D +S
Sbjct: 157 GLGDDPIDIEDLVNIGRSNGPCPYYVSRELHKVVDILFAPYNYLIDRGNRKSLSV-CWNN 215
Query: 229 SVVVFDEAHNIDNVCIEALS 248
S+++FDEAHN++ +C +A S
Sbjct: 216 SILIFDEAHNLEGLCADAAS 235
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 11/184 (5%)
Query: 453 SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
S+++TSGTLSP++ + + L V ++ + I V+ G ++ + R
Sbjct: 474 SIILTSGTLSPLESFAQELKLEFPVRLENPHVISSNQIWAGVVPAGPSGCSFNSSYRTRD 533
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW---------NDSGILKEIMQ 563
+ G +V IVPDG++ FF SY +++ + W N S I + I +
Sbjct: 534 SLEYKQELGNAIVNFARIVPDGLLVFFPSYYILEQCVGCWKNKSHANSTNSSTIWERICK 593
Query: 564 HKLVFIETQDVVETTLALDNY-RKACDCG-RGAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
HK IE + ++++Y K D GAVFF+V RGKV+EG+DF H GR V++
Sbjct: 594 HKQPVIEPRQSSLFPSSIEDYMNKLKDSSMSGAVFFAVCRGKVSEGLDFADHAGRAVVIT 653
Query: 622 GVPF 625
G+PF
Sbjct: 654 GIPF 657
>gi|440895926|gb|ELR47985.1| Putative ATP-dependent RNA helicase DDX11, partial [Bos grunniens
mutus]
Length = 924
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 17/201 (8%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+++ G
Sbjct: 604 VVKESRAVVIAGGTMQPVSDFREQLLAGAGVEAERVVEFSCGHVIPPDHILPLIICSGPS 663
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P V G++L + ++VP G+VCFF SY Y ++ A W SG+L
Sbjct: 664 NQILDFTYQKRGLPQVMDETGRILCNLCNVVPGGVVCFFPSYEYQHQVCAHWEKSGLLAR 723
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKAC-----DCGR------GAVFFSVARGKVAEGID 609
+ K +F E + L Y + CG+ GA+ SV GK++EGI+
Sbjct: 724 LTIRKKIFQEPRKANRVEQVLLEYSSSGLVFPQHCGQARGTETGALLLSVVGGKMSEGIN 783
Query: 610 FDRHYGRLVIMFGVPFQYTLS 630
F GR V+M G+P+ +S
Sbjct: 784 FSDDLGRCVVMVGMPYPNIMS 804
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 31/230 (13%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G +++++G SR+NLCVN V +
Sbjct: 219 TKIYYCSRTHSQL------AQFVHEVQKSPFGQDTRLVSLG--SRQNLCVNGDVRKLGSV 270
Query: 128 DSVDAAC--RKRTASWVRALAAENPNIE---------TCEFFENYEKAA--SAAVLPPGV 174
++ C +R+ +++ E TC F+ +YE+ VL GV
Sbjct: 271 QLINDRCVEMQRSKHERKSITEEEEPTRRRRRQEPRATCPFY-SYERLQLLRDEVLA-GV 328
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
++ L A G++ CPY+ R + A +VV YQ LL +Q + VVV D
Sbjct: 329 KDVEQLVALGEEAQACPYYGGRFAIPAAQLVVLPYQMLLHAPTRQAAGIRLQGQ-VVVID 387
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
EAHN+ + SV VR L + S++ Q ER+ RL+A+
Sbjct: 388 EAHNLIDTITNIHSVEVRGSQL---CQAHSQLLQYTERY----GKRLKAK 430
>gi|169806602|ref|XP_001828045.1| DNA repair helicase [Enterocytozoon bieneusi H348]
gi|161779173|gb|EDQ31197.1| DNA repair helicase [Enterocytozoon bieneusi H348]
Length = 670
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 131/286 (45%), Gaps = 68/286 (23%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+K+ TV+FPY YP Q M + ++ + L+E PTGTGK++A+L + Y+
Sbjct: 4 YKIGGYTVWFPYKP-YPAQIQTMETMLKSFGSSKCALIESPTGTGKSLAILCAVMGYLEK 62
Query: 63 KPENPV------------------------KLIYCTRTVHEMEKTLAELKLLHNYQTRHL 98
K N + + C+RT ++++ + +L+ +T++
Sbjct: 63 KDLNDIIDPKKRRIDNDTENFVNNNQIGNPTIYICSRTHKQIDQLINQLR-----KTKY- 116
Query: 99 GPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACR-----KRT--ASWVRALAAENPN 151
P IL SRK C+NS++ A + ++ AC+ KR S V L + N
Sbjct: 117 NPRISILG----SRKQYCINSQLRRALD---INTACKDLIDTKRCIYKSGVSRLKKQISN 169
Query: 152 IETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQY 211
I Y ++++R GK+ G CPYF +R + A ++ Y Y
Sbjct: 170 I----------------------YDIEEIRNSGKKCGGCPYFASREIANEAEIIFAPYNY 207
Query: 212 LLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLE 257
++DP + + E+ K ++V+ DEAHNI++ C S + +TL+
Sbjct: 208 IIDPHIRKSLDIEL-KNAIVIIDEAHNIEDTCRSVGSFELNSRTLD 252
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 36/202 (17%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRG 498
D S+ + + +S+++ SGTL+P + + K++ I P +L
Sbjct: 392 DPSIIFAGLRNEVRSIILLSGTLTPFATF----------TSELKVNFENKLIAPHILV-- 439
Query: 499 SDQLPVST------KFDMRSDPGVARNYGKLLVEMVSIVPD---------GIVCFFVSYS 543
S+Q+ V+ K ++ +A N + L ++ +I+ + G + F SY
Sbjct: 440 SNQVFVANIKKGHLKTELTGTYSIA-NTPEYLSQIATIIENIATQIHIYGGTLVFVPSYV 498
Query: 544 YMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGK 603
++ ++ ++ L I++ E D T + +N K D A+FF V RGK
Sbjct: 499 FLKKL----HNKMKLPVIVEPDTNSTEKFDA--TLIEYEN--KLKDSSHPAIFFCVYRGK 550
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
+EGI+F Y R VI G+P+
Sbjct: 551 ASEGINFQDKYARAVIGIGIPY 572
>gi|124808195|ref|XP_001348254.1| DNA-repair helicase, putative [Plasmodium falciparum 3D7]
gi|23497145|gb|AAN36693.1| DNA-repair helicase, putative [Plasmodium falciparum 3D7]
Length = 1160
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 106/201 (52%), Gaps = 12/201 (5%)
Query: 433 LQLSCHDASLAVKPVF-DRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
+ L C A+ ++ + ++ S+++TSGTLSPI+ + + L+ + SFK L D +
Sbjct: 539 ISLLCFSATASLCGIIKEKINSIIVTSGTLSPIEPFSKQLSGNYF---SFKHILENDHVI 595
Query: 492 PM------VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYM 545
+T ++Q+ +ST ++ R++ R+ G + +++ +P G++ FF SYS M
Sbjct: 596 KSHQLFVGCMTHYNNQILLST-YENRANENYIRSLGNCIFDIIVCIPYGVLIFFSSYSSM 654
Query: 546 DEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR-GAVFFSVARGKV 604
E + +W I +I +K +F+E + LD Y R GA+ V RGK+
Sbjct: 655 TETVNSWKKMKIYDKINTYKTIFVEPNKATDLKDILDQYEILIKKKRKGAILMGVCRGKI 714
Query: 605 AEGIDFDRHYGRLVIMFGVPF 625
+EGIDF R VI+ G+P+
Sbjct: 715 SEGIDFKDDCCRAVIICGLPY 735
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 54/293 (18%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL- 61
+ + D+ VYFPY+ +Y QY+YML + AL + + +LE PTGTGKT+ LL SYV+
Sbjct: 22 YTINDIEVYFPYE-LYDCQYNYMLSVLSALKKRENAILESPTGTGKTLCLLCASISYVVD 80
Query: 62 ------------------------------SKPENPV-----KLIYCTRTVHEMEKTLAE 86
S P+ V K+IY +RT ++++ + E
Sbjct: 81 ILEKKGHFNENINISENNKNISLEFGKSNESVPKKVVANEFPKIIYASRTHSQLKQVIKE 140
Query: 87 LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
LK ++ + K+L L SR LCV++ + + ++ KRT +
Sbjct: 141 LKNVYFIKN---NEKYKLLTTILGSRDQLCVHN--INYNYKGTLLNNMCKRTRKNGECIY 195
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDL---RAFGKQQGWCPYFLARHMVQFAN 203
+ K P V TL ++ + G+ +CP++ R + +
Sbjct: 196 HNG--------LKYLYKLKHLFTTPMDVETLSEIGKGNSVGQNIHFCPFYATREIQNECH 247
Query: 204 VVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTL 256
+++ Y YL + I+ ++ S+++ DE HNI+NV EA+S ++ L
Sbjct: 248 IILLPYNYLFEESTRKILKLNLE-NSIIIIDEGHNIENVAEEAVSFKLKDTDL 299
>gi|341583148|ref|YP_004763640.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus sp. 4557]
gi|340810806|gb|AEK73963.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus sp. 4557]
Length = 671
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 135/281 (48%), Gaps = 33/281 (11%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
KL +T YFPY N+ P Q ++ + +A++ + ++E PTG GKT+++L+ + +
Sbjct: 21 LKLFPMTDYFPYKNLRPNQRDFIELVSKAVENGENVIIEAPTGFGKTVSVLAGVLPHA-- 78
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
E K++Y RT +M++ + ELK + + + + L SRK+LC+++ L
Sbjct: 79 -KEMGYKVLYLARTHRQMDRVIEELKAISR--------KSPVSGVELRSRKDLCLHT-YL 128
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL----- 177
D+ A + + CEF+EN EK A + L
Sbjct: 129 TQFTSDAYTAMV----------VCKNLKKMGKCEFYEN-EKKKKAEFDELVRFFLGEPSH 177
Query: 178 -QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAG--IISKEMQ-KESVVVF 233
++ + + CPY L + + + A+V+V SY YLL P + I S ++ + +VVF
Sbjct: 178 PAEILDYSQTLELCPYDLTKRIAEKADVIVASYLYLLSPTIRENFISSLDLDYSDMIVVF 237
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQ-EIERF 273
DEAHN+ + I ALS + T+ A + N+ EI F
Sbjct: 238 DEAHNLPDQAISALSDKISINTINRAIKEADEYNEHEIANF 278
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP 492
L+L D S A+ + D QS + SGTL+P++ + ++ + F P
Sbjct: 384 LELVALDPSKALSFIKD-VQSAIFMSGTLTPLEAFRDVMGVENARLKKF----------P 432
Query: 493 MVLTRGSDQLPVSTKFDMRSDPGVARNYGKL---LVEMVSIVPDGIVCFFVSYSYMDEII 549
++ R + Q+ V+ R D + Y K+ +VE I+P + F SY + ++
Sbjct: 433 RMVKRENAQVLVAKDVSTRGDERSLQVYRKMVDYIVEAARIIPKNVGVFAASYEVLQGLL 492
Query: 550 ATWNDSGILKEIMQHKLVFIETQDV--VETTLALDNYRKACDCGRGAVFFSVARGKVAEG 607
+ N L+E K VFIE Q V E L + + KA G GAV V G+ +EG
Sbjct: 493 SA-NLQVRLEET--GKAVFIEKQGVSSAENDLMVAQF-KAHARGNGAVLLGVMGGRNSEG 548
Query: 608 IDFDRHYGRLVIMFGVPF 625
D+ V++ G+P+
Sbjct: 549 QDYSGDEMNGVVLVGIPY 566
>gi|302756033|ref|XP_002961440.1| hypothetical protein SELMODRAFT_77246 [Selaginella moellendorffii]
gi|300170099|gb|EFJ36700.1| hypothetical protein SELMODRAFT_77246 [Selaginella moellendorffii]
Length = 787
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 132/279 (47%), Gaps = 48/279 (17%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--V 60
+KL+ V V FPYD Y Q YM + AL + LLE PTGTGKT+ LL ++
Sbjct: 5 YKLKGVDVRFPYD-AYDCQLVYMESVIAALQKGQNALLESPTGTGKTLCLLCATLAWRES 63
Query: 61 LSKPENPVKL-----------------------IYCTRTVHEMEKTLAELKLLHNYQTRH 97
L+ P+ ++ IY +RT ++++ + ELK +Y+
Sbjct: 64 LAPPDRGRRMSASSQSSDLDPTSSQEANKLPTVIYASRTHSQLQQVIHELKAT-SYR--- 119
Query: 98 LGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEF 157
K++A+G SR+ LC+ V R + + ACR T+ R + E+
Sbjct: 120 ----PKMVALG--SREQLCIEKDVQKLRGR-AQNNACR--TSCKARKCYH---HTRVNEY 167
Query: 158 FENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKV 217
+N + + + ++DL G+ G CPYFL+R + +++ Y YL+D +
Sbjct: 168 LKNNPELGNEPI------DIEDLVRIGRTHGPCPYFLSRELHGSVDMIFVPYNYLIDKEN 221
Query: 218 AGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTL 256
++ + SV++FDEAHN++ VC +A S + TL
Sbjct: 222 RKSLTGIRWENSVIIFDEAHNLEGVCADAASFDLPTTTL 260
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 8/182 (4%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+++V+TSGTLSP++ + L V + + I V++ G +++ + R
Sbjct: 430 RTIVLTSGTLSPLESFAIELKLPFDVRLENPHVIGANQIWVGVVSSGPSGRALNSSYRTR 489
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW------NDSGILKEIMQHK 565
P + G +V IVP+G++ FF SY ++ + +W N + + I +HK
Sbjct: 490 DSPEYKNDLGNTIVNFARIVPNGLLVFFPSYYLLNSCVDSWQTPNQVNGHTLWERICKHK 549
Query: 566 LVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
+E ++ A +++ + G GAVFF+V RGKV+EG+DF GR VI+ G+
Sbjct: 550 QPVVEPKESALFNQAHEDFLAKVKDSTGTGAVFFAVCRGKVSEGLDFADETGRAVIVTGM 609
Query: 624 PF 625
PF
Sbjct: 610 PF 611
>gi|147789151|emb|CAN73493.1| hypothetical protein VITISV_017477 [Vitis vinifera]
Length = 914
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 22/198 (11%)
Query: 447 VFDRFQSVVITSGTLSPID-----LYPRLLN--FHPVVSRSFKMSLTRDCICPMVLTRGS 499
+ D+ +V++ GTL PI+ L+PRL + FH S + + I P+ L+ G
Sbjct: 579 IVDQAHAVILAGGTLQPIEETRERLFPRLTSDQFHFF---SCSHIIPPESILPVALSHGP 635
Query: 500 DQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILK 559
+ RS + G LL +V++VP+GIV FF S+ Y ++ W SGIL+
Sbjct: 636 SGQSFDFSYSSRSSSIMIEELGLLLCNLVTVVPEGIVVFFSSFDYEGQVHDAWKASGILE 695
Query: 560 EIMQHKLVFIETQDVVETTLALDNYRKACDCG------------RGAVFFSVARGKVAEG 607
IM+ K VF E + + L Y++A D GA+ +V GK++EG
Sbjct: 696 RIMKKKCVFREPRKNTDVEFVLKEYKEAIDKSSDRNQKEDPVPQNGAILLAVVGGKISEG 755
Query: 608 IDFDRHYGRLVIMFGVPF 625
I+F GR ++M G+P+
Sbjct: 756 INFSDGMGRCIVMVGLPY 773
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 22/190 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
+K+ +C+RT ++ + + EL+ G K++ +G SRK C+N VL N
Sbjct: 185 LKIYFCSRTHSQLSQFVKELR------KTIFGNEMKVVCLG--SRKISCINEEVLKLGNS 236
Query: 128 DSVDAAC------RKRTASWVRALAAENPNIET-----CEFFENY--EKAASAAVLPPGV 174
++ C +K+ S ++ L +E T C N+ +K + + G
Sbjct: 237 TRINERCLELQQNKKKEVSKLKNLGSEGRIRRTKASSGCPMLRNHKLQKQFRSEISQEGA 296
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
++DL G++ G CPY+ +R ++ A++VV YQ LL + + K ++V+ D
Sbjct: 297 LDIEDLVHLGRRMGTCPYYGSRSIIPAADLVVLPYQSLLSKSSRESLGLNL-KNNIVIID 355
Query: 235 EAHNIDNVCI 244
EAHN+ + I
Sbjct: 356 EAHNLADSLI 365
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE 65
FPY+ Y Q +M L R+L+ G +LE PTGTGKT++++ +++ + +
Sbjct: 12 FPYEP-YSIQIDFMKALYRSLNKGGVSMLESPTGTGKTLSIICSALQWLVDRKQ 64
>gi|46981234|gb|AAT07552.1| unknown protein [Oryza sativa Japonica Group]
Length = 845
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 19/189 (10%)
Query: 453 SVVITSGTLSPID-----LYPRLLNFHPVVSRSFKMS--LTRDCICPMVLTRGSDQLPVS 505
+V++ GTL PI+ L+P N P + F + + + I P+ +TRG
Sbjct: 522 AVILAGGTLQPIEETRLRLFP---NLPPSDIKFFTCNHIVPPESILPIAVTRGPSGKAFD 578
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
+ RS + G+ L +V+ VP+G+V FF SY Y + W SG++ +I + K
Sbjct: 579 FSYSSRSSHTMIEELGRFLCNVVTTVPEGVVMFFASYEYERFVYDAWAASGMISKISKKK 638
Query: 566 LVFIETQDVVETTLALDNYRKAC-DCGR--------GAVFFSVARGKVAEGIDFDRHYGR 616
VF E ++ V+ + L+ Y++A C + GA+ +V GK++EGI+F GR
Sbjct: 639 HVFREPKNSVDVEMTLNKYKEAIQSCSKSSQDTGVTGALLLAVVGGKISEGINFSDGMGR 698
Query: 617 LVIMFGVPF 625
V+M G+P+
Sbjct: 699 CVVMVGLPY 707
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 24/226 (10%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + +RT ++ + + ELK +T ++ + L SRKNLC+N VL + +
Sbjct: 161 KVFFTSRTHSQLSQFVGELK-----KTEF---GWRLRTVCLGSRKNLCINKDVLKLGSAN 212
Query: 129 SVDAACRK-RTASWVRALAAENPNIETCEFF----------ENYEKAASAAVLPPGVYTL 177
++ C + + + E N + C+ +K + V G +
Sbjct: 213 RINERCLELQKSKKSSKTKVEGDNRKVCQSKTSCGCPMIRKRGLQKEFKSEVSEQGALDI 272
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+DL GK+ G CPY+ AR MV+ A++VV YQ LL + + K SVV+ DEAH
Sbjct: 273 EDLAQLGKKIGTCPYYGARDMVRTADLVVLPYQSLLLKSARESLGLNL-KNSVVIIDEAH 331
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKAT-DAGRLR 282
N+ + + + L LS + + RF++ AG R
Sbjct: 332 NLADSLTSMYNSKITSSQLNAI---LSHLEAYLNRFQSVLGAGNRR 374
>gi|145355132|ref|XP_001421822.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582061|gb|ABP00116.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 849
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 18/221 (8%)
Query: 423 ERMPHIPDPV-LQLSCHDASLAVKPVFDRFQSVVITSGTLSPI-----DLYPRLLNFHPV 476
ER DP L+ DA+ K V ++ +SV++ GTL+PI L+P L +
Sbjct: 515 ERATPEGDPATLRFVLLDAASRFKRVVEQARSVILVGGTLAPIPELVAQLFPDLQSQTAP 574
Query: 477 VSRSFKMS-------LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVS 529
+ ++ + RD + P+ L+ G + + R+D V G++L+
Sbjct: 575 APGARQLKTFTCGHIIPRDNLLPIALSAGPTGVALDFTHGARADVSVIDELGRILLNACR 634
Query: 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY----- 584
+ P G FF S+ Y DE+ A W +G + I K V+ E +D L +Y
Sbjct: 635 VSPGGACVFFPSFKYADEVYARWESTGAMASIRGVKDVYREPRDASTLEQCLRDYAASVS 694
Query: 585 RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
R A GAV V GK++EGI+F GRLV+M G+P+
Sbjct: 695 RGASTRNGGAVLLCVVGGKLSEGINFKDELGRLVVMVGLPY 735
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 21/214 (9%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA----KILAIGLSSRKNLCVNSRVLAA 124
++I C+RT ++ + + ELK +T G A ++ ++ R LCVN V +
Sbjct: 178 QVILCSRTHSQLTQVIGELK-----RTVFGGSVANAEEQVAVAAVAGRAQLCVNPAVKSL 232
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKA----ASAAVLPPGVYTLQDL 180
+ ++ C + +A E I+ C + KA AA+ P ++DL
Sbjct: 233 GSAARINERCLDMSKG--KAKPGEKTKIKACPYLSKRRKAMLELKEAALAKP--MDIEDL 288
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
G+ CPY+ AR + A++V+ Y LL I+ +++ +VVVFDEAHN+
Sbjct: 289 AKLGESSRACPYYAARSALPEADLVLMPYASLLHADTREILGVKLEN-AVVVFDEAHNLV 347
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
+ + +V TL + + + +ERFK
Sbjct: 348 DAVHNSYGAAV---TLNQLSDVNDMLTEYVERFK 378
>gi|194379638|dbj|BAG63785.1| unnamed protein product [Homo sapiens]
Length = 1243
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 146/338 (43%), Gaps = 75/338 (22%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +L PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILGSPTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN-------PV-------KLIYCTRTVHEMEKTLA 85
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVIN 124
Query: 86 ELKLLHNYQTRH----------------LGPAAKILAIGLSSRKNLCVNSRVLAAENRDS 129
EL+ +Y++R L P + + L SR+ LC++ V E+
Sbjct: 125 ELRNT-SYRSRCRATLWVLETAPPRPTVLSPTRPKVCV-LGSREQLCIHPEVKKQESNHL 182
Query: 130 VDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGW 189
CRK+ AS +C F+ N E+ + L + ++DL G +
Sbjct: 183 QIHLCRKKVAS------------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRV 230
Query: 190 CPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSV 249
CPY+L+R++ Q A+++ Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S
Sbjct: 231 CPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASF 289
Query: 250 SVRRQTLEGATRNLSRINQEI-ERFKATDAGRLRAEYN 286
+ L L I+Q + E+ KA G E++
Sbjct: 290 DLTPHDL---ASGLDVIDQVLEEQTKAAQQGEPHPEFS 324
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTL+P+ + + V + + I V+ RG D +S+ FD R
Sbjct: 497 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRR 556
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 557 FSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEP 616
Query: 572 QDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 617 RSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPY 672
>gi|393904464|gb|EFO17178.2| hypothetical protein LOAG_11323 [Loa loa]
Length = 449
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 141/285 (49%), Gaps = 52/285 (18%)
Query: 9 TVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSL------------- 55
TV FP++ Y Q +M ++ AL + LE PTGTGKT+ LL
Sbjct: 10 TVEFPFEP-YECQIKFMEKVVEALWTGQNAALESPTGTGKTLCLLCAAIAFLKDYKSRIS 68
Query: 56 ----ITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAI 107
I Y ++ P NP K++Y +RT ++ + ++EL +T + I +
Sbjct: 69 QMDSIMKYKVTVPALLSHNP-KILYASRTHSQLAQVISELN-----KTTY----KDIKTV 118
Query: 108 GLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAEN-PNIETCEFFENYEKA-- 164
L+SR LC+N +V+ K +S V++L N + C F+ +YEKA
Sbjct: 119 TLASRDILCINDKVM-------------KENSSHVKSLMCRNLISKHQCPFYNSYEKADP 165
Query: 165 ASAAVLPPG---VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
++ +L G V ++++ ++ +CPYF R + + A++++ Y Y++DP +
Sbjct: 166 STLDLLYNGNGLVPDIEEVINISQKHRYCPYFRNRTVYENADLILLPYNYIVDPSLRHKH 225
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
+ ++ K ++V+FDEAHN++++C E+ SVS + R ++
Sbjct: 226 NIQL-KGNIVIFDEAHNLESICEESTSVSFSTTQISACIREAKKV 269
>gi|215736805|dbj|BAG95734.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 596
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 19/189 (10%)
Query: 453 SVVITSGTLSPID-----LYPRLLNFHPVVSRSFKMS--LTRDCICPMVLTRGSDQLPVS 505
+V++ GTL PI+ L+P N P + F + + + I P+ +TRG
Sbjct: 273 AVILAGGTLQPIEETRLRLFP---NLPPSDIKFFTCNHIVPPESILPIAVTRGPSGKAFD 329
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
+ RS + G+ L +V+ VP+G+V FF SY Y + W SG++ +I + K
Sbjct: 330 FSYSSRSSHTMIEELGRFLCNVVTTVPEGVVMFFASYEYERFVYDAWAASGMISKISKKK 389
Query: 566 LVFIETQDVVETTLALDNYRKAC-DCGR--------GAVFFSVARGKVAEGIDFDRHYGR 616
VF E ++ V+ + L+ Y++A C + GA+ +V GK++EGI+F GR
Sbjct: 390 HVFREPKNSVDVEMTLNKYKEAIQSCSKSSQDTGVTGALLLAVVGGKISEGINFSDGMGR 449
Query: 617 LVIMFGVPF 625
V+M G+P+
Sbjct: 450 CVVMVGLPY 458
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 162 EKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
+K + V G ++DL GK+ G CPY+ AR MV+ A++VV YQ LL +
Sbjct: 8 QKEFKSEVSEQGALDIEDLAQLGKKIGTCPYYGARDMVRTADLVVLPYQSLLLKSARESL 67
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKAT-DAGR 280
+ K SVV+ DEAHN+ + + + L LS + + RF++ AG
Sbjct: 68 GLNL-KNSVVIIDEAHNLADSLTSMYNSKITSSQLNAI---LSHLEAYLNRFQSVLGAGN 123
Query: 281 LR 282
R
Sbjct: 124 RR 125
>gi|312091190|ref|XP_003146892.1| hypothetical protein LOAG_11323 [Loa loa]
Length = 438
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 141/285 (49%), Gaps = 52/285 (18%)
Query: 9 TVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSL------------- 55
TV FP++ Y Q +M ++ AL + LE PTGTGKT+ LL
Sbjct: 10 TVEFPFEP-YECQIKFMEKVVEALWTGQNAALESPTGTGKTLCLLCAAIAFLKDYKSRIS 68
Query: 56 ----ITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAI 107
I Y ++ P NP K++Y +RT ++ + ++EL +T + I +
Sbjct: 69 QMDSIMKYKVTVPALLSHNP-KILYASRTHSQLAQVISELN-----KTTY----KDIKTV 118
Query: 108 GLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAEN-PNIETCEFFENYEKA-- 164
L+SR LC+N +V+ K +S V++L N + C F+ +YEKA
Sbjct: 119 TLASRDILCINDKVM-------------KENSSHVKSLMCRNLISKHQCPFYNSYEKADP 165
Query: 165 ASAAVLPPG---VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
++ +L G V ++++ ++ +CPYF R + + A++++ Y Y++DP +
Sbjct: 166 STLDLLYNGNGLVPDIEEVINISQKHRYCPYFRNRTVYENADLILLPYNYIVDPSLRHKH 225
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
+ ++ K ++V+FDEAHN++++C E+ SVS + R ++
Sbjct: 226 NIQL-KGNIVIFDEAHNLESICEESTSVSFSTTQISACIREAKKV 269
>gi|212224189|ref|YP_002307425.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus onnurineus
NA1]
gi|212009146|gb|ACJ16528.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus onnurineus
NA1]
Length = 666
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 127/268 (47%), Gaps = 32/268 (11%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
KL ++ YFPY+++ P Q ++ + A+ + ++E PTG GKT+++L+ I Y +
Sbjct: 21 LKLFPMSEYFPYESLRPHQREFIELVNEAVKNGENAIIEAPTGFGKTVSVLAGILPYAI- 79
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
E K++Y RT +M++ + ELK ++ I + L SRK+LC++S L
Sbjct: 80 --EMGYKVLYLARTHRQMDRVIEELKAINR--------KTPISGVELRSRKDLCLHS-YL 128
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ---- 178
D+ +A + + C F+EN EK + LQ
Sbjct: 129 TQFTTDAYNAMV----------VCKNLKKLGKCPFYEN-EKKKKTEFDELIKFFLQEPSH 177
Query: 179 --DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVF 233
++ + + CPY L R + + ANV+V SY YLL P + + + +VVF
Sbjct: 178 PMEILDYAQTLELCPYDLTRRIAEKANVIVASYLYLLSPTIRENFLSSLDIDYSDLIVVF 237
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATR 261
DEAHN+ + I ALS + T+ A +
Sbjct: 238 DEAHNLPDQAISALSDRLSIHTVNRAIK 265
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 20/198 (10%)
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP 492
L+L D S A+ V QS + SGTL+P++ + ++ + F P
Sbjct: 384 LELVALDPSKALSFV-KNVQSAIFMSGTLTPLEAFRDVMGIENAKLKKF----------P 432
Query: 493 MVLTRGSDQLPVSTKFDMRSDPGVARNYGKL---LVEMVSIVPDGIVCFFVSYSYMDEII 549
++ R + Q+ V+ R + Y ++ +VE V ++P + F SY + ++
Sbjct: 433 RMVKRENAQVLVAKDVSTRGEERSMEVYKRMVDYIVEAVKLIPKNVGVFTASYEVLQGLL 492
Query: 550 ATWNDSGILKEIMQHKLVFIETQDVV--ETTLALDNYRKACDCGRGAVFFSVARGKVAEG 607
+ + ++ K +FIE Q E L + + KA G+GAV V G+ +EG
Sbjct: 493 SANLE---VRLEGTGKAIFIEKQGATSQENDLLVAKF-KAHARGKGAVLLGVMGGRNSEG 548
Query: 608 IDFDRHYGRLVIMFGVPF 625
D+ VI+ G+P+
Sbjct: 549 QDYSGDEMNGVILVGIPY 566
>gi|197098236|ref|NP_001124929.1| regulator of telomere elongation helicase 1 [Pongo abelii]
gi|75042437|sp|Q5RE34.1|RTEL1_PONAB RecName: Full=Regulator of telomere elongation helicase 1
gi|55726407|emb|CAH89973.1| hypothetical protein [Pongo abelii]
Length = 1302
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 141/323 (43%), Gaps = 68/323 (21%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
L VTV FP+ Y Q YM ++ L K + +LE TGTGKT+ LL
Sbjct: 6 LNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESHTGTGKTLCLLCTTLAWREHLR 64
Query: 54 --------------SLITSYVLSKPEN--------PV-------KLIYCTRTVHEMEKTL 84
L LS N P+ K+IY +RT ++ + +
Sbjct: 65 DGISARKIAERVQGELFPDRALSSWGNAAAAAAGDPIACYTDIPKIIYASRTHSQLTQVI 124
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
EL+ N R K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 125 NELR---NTSYR-----PKVCVLG--SREQLCIHPEVKKQESNHIQIHLCRKKVAS---- 170
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A++
Sbjct: 171 --------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADI 222
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
+ Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L L
Sbjct: 223 IFMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDL---ASGLD 278
Query: 265 RINQEI-ERFKATDAGRLRAEYN 286
I+Q + E+ K G E++
Sbjct: 279 IIDQVLEEQTKTAQQGEPHPEFS 301
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 3/197 (1%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C L+++ V +S+++TSGTL+P+ + + V + + I
Sbjct: 453 VLSYWCFSPGLSMRELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQI 512
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
V+ RG D +S+ FD R + GK L +VP G++ FF SY M++ +
Sbjct: 513 WVGVVPRGPDGAQLSSAFDRRFSEECLSSLGKALGNTARVVPCGLLIFFPSYPVMEKSLE 572
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGI 608
W + +++ K +F+E + + + Y R A GA F +V RGK +EG+
Sbjct: 573 FWRARDLARKMEALKPLFVEPRSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGL 632
Query: 609 DFDRHYGRLVIMFGVPF 625
DF GR VI+ G+P+
Sbjct: 633 DFSDTNGRGVIVTGLPY 649
>gi|320167785|gb|EFW44684.1| DEAH helicase isoform 6 [Capsaspora owczarzaki ATCC 30864]
Length = 1319
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 8/182 (4%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+S+++TSGTLSP+ + + ++ +++ + V++ G +++ F R
Sbjct: 489 RSIILTSGTLSPLASFGAEMQLPFPITLENPHVISKSQLWCGVVSTGPSNCNLNSSFKTR 548
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW-NDSG-----ILKEIMQHK 565
SD + G +V IVPDG++ FF SYS M + I W N SG + + QHK
Sbjct: 549 SDESYLTDLGSAIVNYARIVPDGLLVFFPSYSVMTQCINHWQNRSGTSAKNVWDMLHQHK 608
Query: 566 LVFIETQDVVETTLALDN-YRKACDCG-RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
IE ++ A++ Y K D RGAVFF+V RGKV+EG+DF GR VI+ G+
Sbjct: 609 HAVIEPREKNLFPSAINEFYAKVRDPTIRGAVFFAVCRGKVSEGLDFADMNGRAVIITGI 668
Query: 624 PF 625
P+
Sbjct: 669 PY 670
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 30/185 (16%)
Query: 65 ENPV-KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLA 123
++PV ++IY +RT ++ + + EL Q P A I+ SR+ +C++ V
Sbjct: 144 DSPVPRIIYSSRTHSQLAQAIKEL------QCTSYKPIASIIG----SREQMCIHPEVSQ 193
Query: 124 AENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAF 183
+ CRK + +C F+ N E+ + + V ++ L
Sbjct: 194 VHIQSVQVHNCRKLVG------------LHSCSFYNNLERNKMSRDISNQVLDIEGLVEV 241
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
CPY+L+R + ++ Y YLLDP + + S+++FDEAHN++++C
Sbjct: 242 ------CPYYLSRQLQNRGEIIFMPYNYLLDPTARKAANLNL-ANSIIIFDEAHNLESIC 294
Query: 244 IEALS 248
++ S
Sbjct: 295 EDSAS 299
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
F + V V FP+ N Y Q YM ++ + L + LLE PTGTGKT+ LL
Sbjct: 7 FTIRGVDVEFPF-NPYDCQLVYMEQVIQCLQEGTNALLESPTGTGKTLCLL 56
>gi|241950739|ref|XP_002418092.1| ATP-dependent RNA helicase Chl1, putative [Candida dubliniensis
CD36]
gi|223641431|emb|CAX43392.1| ATP-dependent RNA helicase Chl1, putative [Candida dubliniensis
CD36]
Length = 823
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 16/197 (8%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRG 498
D S K + D+ + V++ GT+ P+ Y L P V + + C V+ +
Sbjct: 525 DPSAIFKEIVDQAKCVLLCGGTMEPMADYMDYL--FPTVPTNKINTFA----CGHVIPKE 578
Query: 499 S-DQLPVST--------KFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
+ + PVS F R+DP + G+ L+E+ VP G+V FF SY Y+D+++
Sbjct: 579 NLEVFPVSQWNDTNFEFSFQKRNDPKQLTSLGEFLIEITKRVPYGVVIFFPSYKYLDQVL 638
Query: 550 ATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR-GAVFFSVARGKVAEGI 608
W ++GIL I +K +F E D L Y R GA+ FSV GK++EGI
Sbjct: 639 QFWKNTGILSSIESNKTIFREPTDPSNVEKVLSQYGYIIQTERKGAMLFSVVGGKMSEGI 698
Query: 609 DFDRHYGRLVIMFGVPF 625
+F R VIM G+P+
Sbjct: 699 NFSDDLARAVIMVGLPY 715
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 18/204 (8%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E P+K+ + +RT ++ + ++L+L N+Q + I L SRK LC+N +V A
Sbjct: 199 ECPIKIFFSSRTHSQLNQFSSQLRLT-NFQASFEDLEERTKYIPLGSRKQLCINDKVRAK 257
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFF-ENYEKAAS----AAVLPPGVYTLQD 179
N SV+ AC L E C++ +NY + + A + + ++D
Sbjct: 258 GNDQSVNDACID--------LQRE---TNGCQYLPKNYMMSNATKEFADLSLAKIRDIED 306
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L G + CPY+ R + ++ YQ + I++ +++ +++ DEAHNI
Sbjct: 307 LNQLGTELNICPYYSVRKGIDMTEIISLPYQMIFQDTTRKILNLDIKDSIIII-DEAHNI 365
Query: 240 DNVCIEALSVSVRRQTLEGATRNL 263
+V S+ V L ++L
Sbjct: 366 IDVITSMYSIKVTSDQLNKVIKSL 389
>gi|110669569|ref|YP_659380.1| DNA repair helicase-like protein [Haloquadratum walsbyi DSM 16790]
gi|109627316|emb|CAJ53806.1| DNA repair helicase Rad3 [Haloquadratum walsbyi DSM 16790]
Length = 731
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 152/658 (23%), Positives = 266/658 (40%), Gaps = 96/658 (14%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
+FPY+ YP Q+S M E+ ALD + L E GTGKT++ L +Y K
Sbjct: 10 FFPYEEPYPNQHSAMSEIAEALDEQRDVLFEGAPGTGKTLSALCPAIAYARQTD----KT 65
Query: 71 IYCTRTVHE-MEKTLAELK-LLHN----------------------YQT-RHLGPAAKIL 105
+ T VH+ M + +A+ + ++H+ YQ + L + L
Sbjct: 66 VVITTNVHQQMRQFVADARAIVHSGIDTIRAVVFKGKSSMCHIDVGYQECQTLRDTTRSL 125
Query: 106 AIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTA--SWVRALAAENPNIET---CEFFEN 160
R L + L E R+ D A R+A + ++ +E ++ + CE++ N
Sbjct: 126 VDKERERTQLREQATALLDEIREGNDGAASARSAVTDELESVTSEIEDLSSGNICEYYRN 185
Query: 161 YEKAASAAV-----LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP 215
A A L V T +++ A+ +Q+ C Y L + ++ ++V+ +Y +LLDP
Sbjct: 186 NLTEADATEAFFQWLFDDVRTAEEIYAYAEQRQLCGYELLKEGIEGVDLVICNYHHLLDP 245
Query: 216 KVAGIISKEMQKES---VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIER 272
+ + + ++ V +FDEAHNI++ + ++ TLE A L+ I ++ E
Sbjct: 246 AIREQFFRWLGRDPDDIVTIFDEAHNIESAARDHAGRTLTENTLEEA---LTEI-KDCED 301
Query: 273 FKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHV 332
+A A + + AL+ A + + S+ V RR + L
Sbjct: 302 SRAEPAANVFEAFL-----TALQTTYADAFGFGEREQVTSEWYDLTVANTDRRDDLTLEF 356
Query: 333 LRRLVQYLRGRLETE-NVEKEGPVSFVASI-TAHAGIDQKTLRFCYERLHSLMLTLEITD 390
L+ QY ++TE ++ ++ S + TA+ + T + C + L +TD
Sbjct: 357 LQ---QYEGRGIDTEIDLARQLAESIDSRYETAYKNGETATRKECQALHAATFLNAWMTD 413
Query: 391 TDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR 450
+D VGT+ +I DE + +C ++ +FD
Sbjct: 414 SD-------------TVGTH----PLISVRRDETTNEVYARAELYTCIPRAVTAD-LFDE 455
Query: 451 FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKF-- 508
+ V+ S TL P D+ +L V +++++ P R L V T
Sbjct: 456 VHASVLMSATLRPFDVAEDVLGLSNPVQMAYELAY------PAENRR---TLAVKTPALF 506
Query: 509 -DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLV 567
R+DP L + P + FF SY+ E AT ++ QH V
Sbjct: 507 SSARNDPDTQSIIADTLADAARFTPGNTLFFFPSYAEA-ERYAT--------QLRQHDAV 557
Query: 568 FIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ E+ + R++ G V + G +AEG+ FD + R V + GVP+
Sbjct: 558 SKPVM-LDESGTETEPLRQSFVGQNGCVLCTSLWGTLAEGVSFDDNDARTVAVVGVPY 614
>gi|150863715|ref|XP_001382279.2| YPL008W (CHL1)-like protein [Scheffersomyces stipitis CBS 6054]
gi|206558237|sp|A3LN13.2|CHL1_PICST RecName: Full=ATP-dependent RNA helicase CHL1; AltName:
Full=Chromosome loss protein 1
gi|149384971|gb|ABN64250.2| syntenic [Scheffersomyces stipitis CBS 6054]
Length = 835
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 6/192 (3%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVL--- 495
D S K + + + V++ GT+ P+ + L F V + K I P L
Sbjct: 532 DPSSVFKDIVSKARCVILCGGTMEPMSEFKNFL-FPYVEDKKIKSFSCNHIIPPDNLKVY 590
Query: 496 -TRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND 554
+ + + FD R++P + G +V + VPDG+V FF SY YM+ I++ W
Sbjct: 591 PVSSQNNVTLEFSFDNRNNPLMIEALGASIVRICQSVPDGVVVFFPSYKYMNHILSIWKS 650
Query: 555 SGILKEIMQHKLVFIETQDVVETTLALDNYRKAC-DCGRGAVFFSVARGKVAEGIDFDRH 613
+ +L +I K +F E + L +Y + +GA+ FSV GK++EGI+F
Sbjct: 651 TDVLTQIESQKKLFEEPTSASQVQTILADYANTIKEEKKGAILFSVVGGKMSEGINFADE 710
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 711 LGRAVVMVGLPY 722
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 19/191 (9%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLA-AE 125
PV + + +RT H A L +Q+ G + + + SRK LC+N +V + ++
Sbjct: 203 PVNIYFSSRT-HSQLNQFAHQLALTKFQSSFKGVEERTKYLPIGSRKQLCINEKVKSFSK 261
Query: 126 NRDSVDAACRKRTASWVRALAAENPNIETCEFF-ENYEKAASAAVLP----PGVYTLQDL 180
N +++ C S E C+F ++Y ++ L ++ ++++
Sbjct: 262 NDSNINDVCVDLQKSK-----------EGCQFLPKDYLNSSLTKKLSDLSLSKIHDIEEI 310
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
G CPY+ R V+ ++ YQ LL I++ +++ +S+VV DEAHN+
Sbjct: 311 ADLGSNMKVCPYYSVRKGVEMTEIISLPYQILLSESTRAILNLQIE-DSIVVIDEAHNLM 369
Query: 241 NVCIEALSVSV 251
+ SV +
Sbjct: 370 DTITSMHSVCI 380
>gi|326912321|ref|XP_003202502.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Meleagris gallopavo]
Length = 896
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLLNFHPV-VSRSFKMS----LTRDCICPMVLTRGSD 500
V ++V+I GT+ P+ D +LL+ V +R + S + + I P+VL G
Sbjct: 602 VVKECRAVIIAGGTMQPVADFREQLLSCAGVDPARIMEFSCGHVIPPENILPIVLCSGPS 661
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCFF SY Y ++ A W +G+L
Sbjct: 662 NQQLEFTYQTRDLPQMMDETGRILCNLCNVVPGGVVCFFPSYDYEKQVYAHWEKTGLLTR 721
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y K C + GA+ SV GK++EGI+F
Sbjct: 722 LATKKKIFQEPKKANQVEQVLVEYAKCIKRCSQAGGQMTGALLLSVVGGKMSEGINFSDD 781
Query: 614 YGRLVIMFGVPF 625
GR VIM G+P+
Sbjct: 782 LGRCVIMVGMPY 793
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 92/208 (44%), Gaps = 50/208 (24%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV--LAA- 124
K+ YC+RT ++ + +H Q G +++++G SR+NLCVN V L A
Sbjct: 216 TKIYYCSRTHSQLSQ------FVHEVQKSPFGKDTRLVSLG--SRQNLCVNEEVRRLGAL 267
Query: 125 ---------------ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAA--SA 167
E + + +KR S C F+ +YE+
Sbjct: 268 QLINDRCTEMQKNKHEKKSDAEVEGKKRRVSRT-----------VCPFY-SYEQMQFLRD 315
Query: 168 AVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP---KVAGIISKE 224
VL V ++ L GK+ CPY+ +R+ + A +VV YQ LL AGII
Sbjct: 316 EVLVE-VKDIEQLVTLGKETKACPYYGSRYAIAAAQLVVLPYQMLLHEATRNAAGIIL-- 372
Query: 225 MQKESVVVFDEAHN-IDNV-CIEALSVS 250
K+ VV+ DEAHN ID + CI + VS
Sbjct: 373 --KDQVVIIDEAHNLIDTITCIHSAEVS 398
>gi|145525869|ref|XP_001448751.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416306|emb|CAK81354.1| unnamed protein product [Paramecium tetraurelia]
Length = 913
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 36/299 (12%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV---- 60
+E+ +YFP+ Y Q YM + + LD K + LLE PTGTGKT++LL ++
Sbjct: 39 IENTEIYFPHK-PYDVQVKYMESVVQILDKKCNGLLESPTGTGKTLSLLCSTMGWLHKHR 97
Query: 61 ----LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLC 116
S + +K+IY +RT ++++ ELK A I +G SR C
Sbjct: 98 KEQQKSGASSNLKIIYASRTHAQLKQVAQELK--------RTVYAPNISMVG--SRDQYC 147
Query: 117 VNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT 176
+ + +++ ACR+ L N C+F+ AA + T
Sbjct: 148 L--LDFSNLKGNALIQACRR--------LVKRNK----CQFYNKDSLPNIAAQNSKLINT 193
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
L++ + FG CPY+ R + A++++ Y YLLD + + I++ E S+++FDEA
Sbjct: 194 LEESKQFGHNNNVCPYYFERERLTNADLILLPYNYLLDREFSNIVNTE---NSIIIFDEA 250
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALR 295
HN+ + S + ++ A + L R +E+ +G + + + L+LR
Sbjct: 251 HNVPSAAENGQSFFINETIVQEAKKELERWLKELYEMPDFFSGFQQVLNQKKLSSLSLR 309
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 10/195 (5%)
Query: 433 LQLSCHDASLAVKPV-FDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
L + C D SLA K + + S++ TSGTL+P++ + L FK+ L+ +
Sbjct: 450 LNMWCLDPSLAFKKLKLNNICSIIFTSGTLAPMESWQSELQME------FKIQLSNKHVI 503
Query: 492 PMVLT-RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
+ R L + R + N G ++ ++ GI+ F SY M I
Sbjct: 504 DIANNVRAFQHLSFDFSYQKRENEDQIINLGLAILNFSKVIKGGIIIVFSSYGLMQNIRR 563
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610
W + +++ + + K E Q + L+ +++ + +GA+ F+V RGKV EGID
Sbjct: 564 RWANQQLIQRLNEVKKCLWEEQGSAQFHNTLEVFKQ--NGQKGAILFAVHRGKVTEGIDL 621
Query: 611 DRHYGRLVIMFGVPF 625
R V + G+P+
Sbjct: 622 SDDLCRAVFLIGIPY 636
>gi|255574578|ref|XP_002528200.1| regulator of telomere elongation helicase 1 rtel1, putative
[Ricinus communis]
gi|223532412|gb|EEF34207.1| regulator of telomere elongation helicase 1 rtel1, putative
[Ricinus communis]
Length = 1049
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 8/181 (4%)
Query: 453 SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
S+++TSGTLSP+D + + L + ++ I V+ G ++ + R
Sbjct: 437 SIILTSGTLSPMDSFAQELKLDFPIRLENPHVISSKQIWAGVVPVGPSGRSFNSSYRNRD 496
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND------SGILKEIMQHKL 566
+ G +V IVPDG++ FF SY +D+ I W + + I + I +HK
Sbjct: 497 SLEYKQELGNAIVNFARIVPDGLLVFFPSYYLLDQCIGCWKNVTHASSTTIWERICKHKQ 556
Query: 567 VFIETQDVVETTLALDNY-RKACDCG-RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
+E + LA+++Y K D GAVFF+V RGKV+EG+DF H GR V++ G+P
Sbjct: 557 PVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHTGRAVMIIGMP 616
Query: 625 F 625
F
Sbjct: 617 F 617
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 125/277 (45%), Gaps = 55/277 (19%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+K+ + V FPY+ Y Q YM ++ ++L ++ + LLE PTGTGKT+ LL ++ S
Sbjct: 4 YKIRGIDVDFPYE-AYDCQLVYMEKVIQSLQSRCNALLESPTGTGKTLCLLCATLAWRKS 62
Query: 63 ----------------------KPENPVK------LIYCTRTVHEMEKTLAELKLLHNYQ 94
P +P + ++Y +RT ++ + + ELK +Y+
Sbjct: 63 LGPFTTGKIERNGRTAGSKSDDTPPSPSEGTALPTIVYTSRTHSQLRQVVQELKR-SSYR 121
Query: 95 TRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAA---CRKRTASWVRALAAENPN 151
+ + L SR+ LC++ V + +A C++R A
Sbjct: 122 PK---------MVILGSREQLCIHDEVSLLRGKAQTNACHYVCKRREKRQCTHFA----- 167
Query: 152 IETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQY 211
++ V ++DL G++ G CPY+++R + + +++ Y Y
Sbjct: 168 -RVSDYVRKNPHLGDEPV------DIEDLVKMGRRFGPCPYYVSRELHKVVDILFAPYNY 220
Query: 212 LLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
L+D + + K S+++FDEAHN++++C +A S
Sbjct: 221 LIDRSYRKSLKIDWDK-SILIFDEAHNLESLCADAAS 256
>gi|195132879|ref|XP_002010867.1| GI21782 [Drosophila mojavensis]
gi|193907655|gb|EDW06522.1| GI21782 [Drosophila mojavensis]
Length = 852
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 4/178 (2%)
Query: 452 QSVVITSGTLSPI-DLYPRLLNFHP--VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKF 508
++++I GT+ P +L +L P VV R + + D + P +L G + +
Sbjct: 576 RALIIAGGTMRPTQELTEQLFAHCPERVVERFYDHVVPADAVLPFILPTGPTGARLCFSY 635
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
R+ P + + +L + ++P G+VCF SY+Y+D + SG L+ I Q K +F
Sbjct: 636 AERTSPAMLKELSMVLQNLCGVLPAGVVCFLPSYAYLDTVYGHLEQSGALQRIGQRKRIF 695
Query: 569 IETQDVVETTLALDNYRKACD-CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
ET L Y A D GA+ SV GK++EG++F GR VI+ G+P+
Sbjct: 696 RETAGGAGVEQLLQQYANAIDQTAGGALLLSVVGGKLSEGLNFADQLGRGVIVVGLPY 753
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 99/209 (47%), Gaps = 15/209 (7%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
V++ +C+RT ++ + +AEL+ +T H + I L SR+ LC+N++V N
Sbjct: 193 VQIFFCSRTHSQLSQIVAELR-----KTPH---GQNVRCIALGSRQQLCINAQVRKLPNI 244
Query: 128 DSVDAACRKRTASWV--RALAAENPNIETCEFFEN--YEKAASAAVLPPGVYTLQDLRAF 183
++ C S + A++ + C + + ++ ++AA+ P + +++L A
Sbjct: 245 GLINERCLDMAQSKISANAISKSRQTLSRCVYKSSAQLQRLSNAALCEP--FDIEELVAE 302
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G G CPY+ R A +++ Y LL + ++ + ++++ DEAHN+ +
Sbjct: 303 GSACGGCPYYATRAAQSQAQLLLLPYPMLLQRSARQQLGLDL-RGAIIIVDEAHNLLDTI 361
Query: 244 IEALSVSVRRQTLEGATRNLSRINQEIER 272
+ S + L+ A + L+ Q R
Sbjct: 362 AQLHSSELSLAQLQLAKQQLAGYKQRYAR 390
>gi|242207140|ref|XP_002469424.1| predicted protein [Postia placenta Mad-698-R]
gi|220731453|gb|EED85297.1| predicted protein [Postia placenta Mad-698-R]
Length = 785
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 100/191 (52%), Gaps = 5/191 (2%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPID--LYPRLLNFHPVVSRSFKMS--LTRDCICPMV 494
+ S + + D +S+V+ GT+SP+ ++ + P R+F + + +V
Sbjct: 478 NPSTHFRELIDIARSIVLAGGTMSPVSDVIHQLFMGLEPSRIRTFSCGHIIPTSNLQTLV 537
Query: 495 LTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND 554
L +G + K++ R + + G++L+ V++VP G+V F SYS++ +++ W
Sbjct: 538 LKKGPRGGDLLFKYEQRGNQAIIAELGQILLNFVNVVPGGMVVFLPSYSFLHTMMSAWEG 597
Query: 555 SGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHY 614
SG+++++ K VF E QD + L Y +A GA+ F+V K++EG++F
Sbjct: 598 SGLMEKLKSRKRVFSEPQDAGQIEAVLREYSEAIHR-TGALLFAVVGAKLSEGLNFTDDL 656
Query: 615 GRLVIMFGVPF 625
R V++ G+PF
Sbjct: 657 ARAVLIIGLPF 667
>gi|357130391|ref|XP_003566832.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Brachypodium distachyon]
Length = 872
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 12/206 (5%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
L C + LA++ +S+++TSGTLSP+D LN V ++ D I
Sbjct: 300 TLSWWCFNPGLAMEEFLKLGVRSIILTSGTLSPLDSLAMELNLEFPVRLENPHVISPDQI 359
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
V+ G +++ + R + G ++V IVPDG++ FF SYS MD+ I
Sbjct: 360 WVGVVPVGPSGHSLNSSYRTRETIKYKQELGLVIVNFARIVPDGLLVFFPSYSMMDKCID 419
Query: 551 TW---------NDSGILKEIMQHKLVFIETQDVVETTLALDNYRKAC--DCGRGAVFFSV 599
W +++ I + + +HK IE + A+++Y GA+FF+V
Sbjct: 420 FWKNRNHEHSVDENTIWQRMCKHKQPVIEPRQSSNFPDAIEDYAAKLRDSSTSGAIFFAV 479
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPF 625
RGKV+EG+DF GR VI+ G+PF
Sbjct: 480 CRGKVSEGLDFADRAGRAVIVTGMPF 505
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 18/143 (12%)
Query: 109 LSSRKNLCVN---SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAA 165
L SR+ +C++ S++ + C+KR L N NI T E+ N +
Sbjct: 4 LGSREQMCIHDEVSKLRGKAQNNGCHYLCKKR-------LCCHN-NIVT-EYMRNNSELG 54
Query: 166 SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM 225
S + ++DL G+ +G CPY+++R + + +++ Y YL+DP ++
Sbjct: 55 SEP------FDIEDLVNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLTGIP 108
Query: 226 QKESVVVFDEAHNIDNVCIEALS 248
+V++FDEAHN++++C +A S
Sbjct: 109 WDNAVLIFDEAHNLESICADAAS 131
>gi|390961806|ref|YP_006425640.1| putative Rad3-related DNA helicase [Thermococcus sp. CL1]
gi|390520114|gb|AFL95846.1| putative Rad3-related DNA helicase [Thermococcus sp. CL1]
Length = 652
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 33/273 (12%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
YFPY+++ P Q ++ + + + ++E PTG GKT+++L+ I E K+
Sbjct: 10 YFPYESLRPNQREFIELVAETVRNGENAIIEAPTGFGKTVSVLAGILP---QAKEMGYKV 66
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
+Y RT +M++ + ELK+++ AK+ + L SRK LC+++ + + +
Sbjct: 67 LYLARTHRQMDRVIEELKVINR--------KAKVSGVELRSRKELCLHTYL----TQFTS 114
Query: 131 DAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQ------DLRAFG 184
DA ++ L CEF+EN EK A + L ++ ++
Sbjct: 115 DAYTAMVVCKNLKKLG-------KCEFYEN-EKKKKAEFDELVNFFLDEPSHPVEILSYA 166
Query: 185 KQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEAHNIDN 241
+ CPY L + M + A+V+V SY YLL P + + + +VVFDEAHN+ +
Sbjct: 167 ETLELCPYDLTKRMAEKADVIVASYLYLLSPSIRENFISSLDVDYSDLIVVFDEAHNLPD 226
Query: 242 VCIEALSVSVRRQTLEGATRNLSRINQ-EIERF 273
I ALS + T+ A + N+ EI F
Sbjct: 227 QAISALSDRISINTVNRAIKEADEYNEHEIANF 259
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP 492
L+L D S A+ QS + SGTL+P++ + ++ + F P
Sbjct: 365 LELVALDPSKALG-FLREVQSAIFMSGTLTPLEAFRDVMGIERARLKKF----------P 413
Query: 493 MVLTRGSDQLPVSTKFDMRSDPGVARNYGKL---LVEMVSIVPDGIVCFFVSYSYMDEII 549
++ R + Q+ V+ R + + Y K+ +VE ++P + F SY + ++
Sbjct: 414 RMVKRENAQVLVAKDVSTRGEERSIQVYRKMVDYIVEAAKLIPRNVGVFAASYEVLQGLL 473
Query: 550 ATWNDSGILKEIMQHKLVFIETQDV--VETTLALDNYRKACDCGRGAVFFSVARGKVAEG 607
+ N L+E K VFIE Q E + ++ KA G GAV V G+ +EG
Sbjct: 474 SA-NLQVRLEET--GKAVFIEKQGASSAENDAMVASF-KAHAKGNGAVLLGVMGGRNSEG 529
Query: 608 IDFDRHYGRLVIMFGVPF 625
D+ VI+ G+P+
Sbjct: 530 QDYSGDEMNGVILVGIPY 547
>gi|383862044|ref|XP_003706494.1| PREDICTED: regulator of telomere elongation helicase 1 homolog
[Megachile rotundata]
Length = 974
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
S+V+TSGTLSP+ + L V + D IC VL++G D +++ F+ R
Sbjct: 471 HSIVLTSGTLSPLQPFISDLGIPIEVQLENPHIVKGDQICVGVLSQGPDGYSLNSSFNTR 530
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+DP + G+ + ++P+G++ FF SY M + W + G+ +I + K++ I
Sbjct: 531 NDPKYIMSLGRTIFNFSCLIPEGLLVFFPSYPVMKKCREEWQNVGLWTKIAERKVIIIYI 590
Query: 572 QDVVE------TTLALDNYRKACD-CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
++ ++ + Y K D +GA+F +V RGKV+EG+DF GR V++ G+P
Sbjct: 591 CYIIIYIRDEFASIMSEYYEKINDPSHKGAIFMAVCRGKVSEGLDFANANGRAVLITGLP 650
Query: 625 F 625
F
Sbjct: 651 F 651
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 119/290 (41%), Gaps = 66/290 (22%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL----------- 53
+ +V V FP+ Y Q YM ++ L + +LE PTGTGKT++LL
Sbjct: 6 INNVIVNFPF-KPYSVQEEYMTKVIECLQNNKNGVLESPTGTGKTLSLLCSSLSWLLTRK 64
Query: 54 -SLITSYVLSKPENPV-------------------------------KLIYCTRTVHEME 81
+ ++ +NP K+IY +RT ++
Sbjct: 65 AQMQAQSLIGAVDNPTFGGHFFKKLNNELKEATGSTKPSTGFTWAAPKIIYASRTHSQLS 124
Query: 82 KTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
+ + ELK +H+ A L SR LC++ V N + C + S
Sbjct: 125 QAMQELK---RTSYKHVSVAV------LGSRDQLCIHPEVSKETNSSNKIHMCHSKLKS- 174
Query: 142 VRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
TC ++ N E V ++DL G++ CPYFL+R + Q
Sbjct: 175 -----------RTCFYYNNVETRKEDPFFKQEVLDIEDLVKAGQKYRCCPYFLSRELKQT 223
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSV 251
A++ Y YLLDPK ++Q VV+ DEAHNI+ +C EA S+ +
Sbjct: 224 ADITFMPYNYLLDPKSRRSQGIDLQ-NCVVLLDEAHNIEKICEEAASLQI 272
>gi|340721189|ref|XP_003399007.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX11-like [Bombus terrestris]
Length = 857
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 126/603 (20%), Positives = 255/603 (42%), Gaps = 84/603 (13%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK-ILAIGLSSRKNLCVNSRVLAAEN 126
+K+ +C+RT ++ + + EL+ P +K + I L+SR+N C+N V ++
Sbjct: 192 IKIFFCSRTHSQLSQFIGELRK---------SPYSKNVSVITLTSRQNYCINKNVKKLKH 242
Query: 127 RDSVDAAC----RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
+ ++ C RK+ + +C F ++ + +QD+
Sbjct: 243 LNLINECCLQLQRKKATAKDEKDLKRKKMTSSCPFVP----GNQDLLIRESLMQIQDIEE 298
Query: 183 F---GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
G+ C Y+ +R V + +++ Y +L K I S K ++++ DEAHN+
Sbjct: 299 IVQKGENLKTCAYYASRKAVSYGQLILVPYNTILH-KNTRISSGINLKGNILIIDEAHNL 357
Query: 240 DNVCIEALSVSVRRQTLEGATRNL----SRINQEIERFKATDAGRLRAEYNRLVEGLALR 295
+EA+ ++ + G RNL S+++Q +RF+ + + +L LR
Sbjct: 358 ----LEAIE-NMHSVIITG--RNLLHCYSQLSQYQKRFQTLFSAKNILSLTQL--SFCLR 408
Query: 296 GNLPIADAWL-SNP-------ALPS--DILKEAVPGNIRRAEHF--LHVLR--RLVQYLR 341
+ + A + SNP A P I + A+ NI F L ++ RL L+
Sbjct: 409 KLITVLGATIKSNPDDVINIEASPKLYKIEEFAIMTNIDTVNMFELLKFIKNSRLNHKLQ 468
Query: 342 G---------RLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTD 392
G ++ N + G F+ SI KT ++ + + L + ++
Sbjct: 469 GFIEQYDTNLKIHNYNTKTCGVKQFLNSI--------KTKSSEFDTITDIQLDEDRSNNP 520
Query: 393 EFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQ 452
+ TI F + + I I P P + +++ + + + +
Sbjct: 521 ----MMTIISFLECLRSNCSDGRIFIIP----GPTVGQSIIKFLLLNPAAHFHDIIRDAR 572
Query: 453 SVVITSGTLSPIDLYPRLL------NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVST 506
+V++ GT++P++ + L + +V+ S + + I + T G +
Sbjct: 573 AVILAGGTMAPMNEFIDQLFIAAGASSERIVTYSCDHVIPEENIVCSITTHGPTGIEFEF 632
Query: 507 KFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKL 566
F R + + G+ L+ + +I+P GI+ F SY++ + + +SGI++++ K
Sbjct: 633 NFQNRENTKLLDELGRTLLNLCNIIPAGIIVFLPSYNFEELMYKHLENSGIIRKLSLKKH 692
Query: 567 VFIETQDVVETTLALDNY----RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFG 622
+ E + + L Y + + G++ FSV GK++EG++F GR VI+ G
Sbjct: 693 ILREPKSASQVHEILKEYSLHIKSPKNSQNGSLLFSVVGGKLSEGLNFSDDLGRCVIVVG 752
Query: 623 VPF 625
+P+
Sbjct: 753 MPY 755
>gi|412990074|emb|CCO20716.1| predicted protein [Bathycoccus prasinos]
Length = 1018
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 121/581 (20%), Positives = 234/581 (40%), Gaps = 91/581 (15%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
++ C+RT ++ + ELK P ++ L SR+ C +
Sbjct: 390 RIFLCSRTHSQIAQLARELKRC---------PYRPNFSV-LGSRQQFCPAKKT------- 432
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQG 188
D C++ T V+A+ + + C +F N + + ++ ++DL+ ++
Sbjct: 433 --DEECQEMTRGCVKAVPPHSTS-SKCAYF-NRQAHLLDEMRNAHIWDIEDLKYAAEEHE 488
Query: 189 WCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
C +++ + + + A V+ Y Y+ D + + ++ ++++ DE HNI++VC E S
Sbjct: 489 ACTFYVTKELYKDAEFVLCPYNYIFDEGIRAAMDIDLTNAAIII-DEGHNIEDVCREGAS 547
Query: 249 VSVRRQTLEGATRNLSRINQEIERFKA---------------TDAGRLRAEYNRLVEGLA 293
V V + LE R L+ I + F + + R E++R +
Sbjct: 548 VEVYEKDLE---RYLNEIGILVVTFPEALPVKNFLIQIAAWISRKMKQRQEFDRYKQTRT 604
Query: 294 LRG-NLPIADAW--LSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLET--EN 348
+ N+ I + W L NP +R E L + + VQ + + +
Sbjct: 605 ISDPNVIIEELWDALCNP---------------KREEETLDSVLKKVQTITAKQSKTMQM 649
Query: 349 VEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVG 408
+ ++G +T G+ + +RF E L + ++ ++ I FA
Sbjct: 650 ISEQG-----EKVTGVLGM--QAMRFANEIATKFSLFKKYSND----YVLCIAQFA---- 694
Query: 409 TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYP 468
P D+ L C ++A + V ++ + V++TSGTLSP
Sbjct: 695 -----HDAFSNPADKPKHDEKTGGFALWCLRPAVAFERVAEKARCVILTSGTLSPTSSLE 749
Query: 469 RLLNFHPVVSRSFKMSLTRDCICP--MVLTRGSDQLPVSTKFDMRSD-PGVARNYGKLLV 525
L F + + + P + D L T+ +++S + G +L+
Sbjct: 750 GELGV------PFPIKVDAPHVVPNNQIFVESLDTLGAITRRNLQSSGQDFSARLGDMLL 803
Query: 526 EMVSIVPDGIVCFFVSYSYMDEIIATW-NDSGILKEIMQHKLVFIETQDVVETTLALDNY 584
+P G++ F SY + I W + +G +I +HK + ET L+++
Sbjct: 804 RYCKHIPGGVLVFLPSYELIQRISDEWFHTTGHHAQISKHKKIVFETGGSRGFDETLEDF 863
Query: 585 RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
R +G++ F+V RGK +EG+DF + R V G+PF
Sbjct: 864 RDGLK-KKGSLLFAVFRGKCSEGLDFKDNAARAVFCIGIPF 903
>gi|170290701|ref|YP_001737517.1| Rad3-related DNA helicase [Candidatus Korarchaeum cryptofilum OPF8]
gi|170174781|gb|ACB07834.1| Rad3-related DNA helicase [Candidatus Korarchaeum cryptofilum OPF8]
Length = 602
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 128/272 (47%), Gaps = 37/272 (13%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
+FPY Q M ++ A+ + L PTG GKT +LS + S + N K+
Sbjct: 3 HFPY-KPREHQKEVMEAIRNAVRRGENFCLHAPTGFGKTPVVLSALLSEL-----NGGKI 56
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
I+ RT +E ++ + ELK+++ +++ +K++C+ +R + + + V
Sbjct: 57 IWAVRTGNETDRPIEELKVINR--------KSEVFGFSFRGKKDMCLLARRMNISSYEGV 108
Query: 131 DAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWC 190
CR R E+C +F N +K + P V++ + L+A Q C
Sbjct: 109 SNLCRLRR--------------ESCPYFRNLKKLDYFQIDGPMVFS-EILKAAESIQ-VC 152
Query: 191 PYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVS 250
PYFL +++ A+++ SY Y+L P I K K S +V DEAHNID V +E S S
Sbjct: 153 PYFLQMMLLEEASLISLSYNYILSPLGWAIRHKVSFKRSFLVVDEAHNIDRVAMELNSKS 212
Query: 251 VRRQTLEGATRNLSRINQEIERFKATDAGRLR 282
+ +LE A + E ER+ D+ LR
Sbjct: 213 ISLTSLERAIK-------EDERYDPKDSLGLR 237
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 16/188 (8%)
Query: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVST 506
++ F+SV+ SGTL PID + ++ SR S+ V+ RG VST
Sbjct: 344 IWKDFRSVIFMSGTLEPIDAFSDVVGVDNF-SRMSVPSIADPERVSTVIVRG-----VST 397
Query: 507 KFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQ-HK 565
+ + SD + R Y K++ +SI P + F SY E+I SGI++ + K
Sbjct: 398 RGEELSDEMLKR-YLKVVERFLSI-PGNLAIFTASYRIQGEVI-----SGIIELAREAGK 450
Query: 566 LVFIETQDVV--ETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
L + E +++ E + L ++ GR + + A G+ AEG DF +++ G+
Sbjct: 451 LTYSEDRNMSGDEASRILREFKDLPRQGREGLLIAPAGGRFAEGADFPGEELEGIMLLGI 510
Query: 624 PFQYTLSK 631
PF +K
Sbjct: 511 PFDRLTTK 518
>gi|87620308|gb|ABD38674.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Ictalurus punctatus]
Length = 90
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 57/72 (79%)
Query: 460 TLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARN 519
TLSP+++YPR+L+FHPV SF M+L R C+CP+++ RG+DQ+ +S+KF+ R D V RN
Sbjct: 19 TLSPLEIYPRILDFHPVTMASFTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRN 78
Query: 520 YGKLLVEMVSIV 531
YG LL+EM +IV
Sbjct: 79 YGNLLLEMSAIV 90
>gi|359482607|ref|XP_002279773.2| PREDICTED: regulator of telomere elongation helicase 1-like [Vitis
vinifera]
Length = 1084
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 11/184 (5%)
Query: 453 SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
S+++TSGTLSP++ + + L V ++ + I V+ G ++ + R
Sbjct: 443 SIILTSGTLSPLESFAQELKLEFPVRLENPHVISSNQIWAGVVPAGPSGCSFNSSYRTRD 502
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW---------NDSGILKEIMQ 563
+ G +V IVPDG++ FF SY +++ + W N S I + I +
Sbjct: 503 SLEYKQELGNAIVNFARIVPDGLLVFFPSYYILEQCVGCWKNKSHANSTNSSTIWERICK 562
Query: 564 HKLVFIETQDVVETTLALDNY-RKACDCG-RGAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
HK IE + ++++Y K D GAVFF+V RGKV+EG+DF H GR V++
Sbjct: 563 HKQPVIEPRQSSLFPSSIEDYMNKLKDSSMSGAVFFAVCRGKVSEGLDFADHAGRAVVIT 622
Query: 622 GVPF 625
G+PF
Sbjct: 623 GIPF 626
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 124/282 (43%), Gaps = 62/282 (21%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY-- 59
I+K+ + V FP++ Y Q YM ++ ++L + + LLE PTGTGKT+ LL ++
Sbjct: 3 IYKIRGIDVDFPFE-AYDCQLVYMEKVIQSLQERCNALLESPTGTGKTLCLLCATLAWRK 61
Query: 60 --------------------------VLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY 93
S N +IY +RT ++ + + ELK +Y
Sbjct: 62 SLGGFSTGRSEWNGQIMGSQHSDVPHSQSAKTNLPTIIYASRTHSQLRQVIQELKRT-SY 120
Query: 94 QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAA---CRKRTASWVRALAAENP 150
+ + + L SR+ LC++ V R +A CRKRT
Sbjct: 121 RPK---------MVVLGSREQLCIHEEVSLLRGRAQTNACHSLCRKRTKKG--------- 162
Query: 151 NIETCEFFENYEKAASAAVLPPGV----YTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
+ +Y + + PG+ ++DL G+ G CPY+++R + + +++
Sbjct: 163 ------YCGHYSRVSDFMKYNPGLGDDPIDIEDLVNIGRSNGPCPYYVSRELHKVVDILF 216
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
Y YL+D +S S+++FDEAHN++ +C +A S
Sbjct: 217 APYNYLIDRGNRKSLSV-CWNNSILIFDEAHNLEGLCADAAS 257
>gi|302776424|ref|XP_002971377.1| hypothetical protein SELMODRAFT_94786 [Selaginella moellendorffii]
gi|300161359|gb|EFJ27975.1| hypothetical protein SELMODRAFT_94786 [Selaginella moellendorffii]
Length = 792
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 131/281 (46%), Gaps = 48/281 (17%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--V 60
+KL+ V V FPYD Y Q YM + AL + LLE PTGTGKT+ LL ++
Sbjct: 5 YKLKGVDVRFPYD-AYDCQLVYMESVIAALQKGQNALLESPTGTGKTLCLLCATLAWRES 63
Query: 61 LSKPENPVKL-----------------------IYCTRTVHEMEKTLAELKLLHNYQTRH 97
L+ P+ ++ IY +RT ++++ + ELK +Y+
Sbjct: 64 LAPPDRGRRMSASSQSSDLDPTSSQEANKLPTVIYASRTHSQLQQVIHELKAT-SYR--- 119
Query: 98 LGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEF 157
K++A+G SR+ LC+ V R + + ACR T+ R + E+
Sbjct: 120 ----PKMVALG--SREQLCIEKDVQKLRGR-AQNNACR--TSCKARKCYH---HTRVNEY 167
Query: 158 FENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKV 217
+ + + + ++DL G+ G CPYFL+R + +++ Y YL+D +
Sbjct: 168 LKKNPELGNEPI------DIEDLVRIGRTHGPCPYFLSRELHGSVDMIFVPYNYLIDKEN 221
Query: 218 AGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEG 258
++ + SV++FDEAHN++ VC +A S + TL
Sbjct: 222 RKSLTGIRWENSVIIFDEAHNLEGVCADAASFDLPTTTLSA 262
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+++V+TSGTLSP++ + L V + + I V++ G +++ + R
Sbjct: 429 RTIVLTSGTLSPLESFAIELKLPFDVRLENPHVIGANQIWVGVVSSGPSGRALNSSYRTR 488
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW------NDSGILKEIMQHK 565
P + G +V IVPDG++ FF SY ++ + +W N + + I +HK
Sbjct: 489 DSPEYKNDLGNTIVNFARIVPDGLLVFFPSYYLLNSCVDSWQTPNQVNGHTLWERICKHK 548
Query: 566 LVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
+E ++ A +++ + GAVFF+V RGKV+EG+DF GR VI+ G+
Sbjct: 549 QPVVEPKESALFNQAHEDFLAKVKDSTATGAVFFAVCRGKVSEGLDFADETGRAVIVTGM 608
Query: 624 PF 625
PF
Sbjct: 609 PF 610
>gi|413944885|gb|AFW77534.1| hypothetical protein ZEAMMB73_555309, partial [Zea mays]
Length = 590
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 19/189 (10%)
Query: 453 SVVITSGTLSPID-----LYPRLLNFHPVVSRSFKMS--LTRDCICPMVLTRGSDQLPVS 505
+V++ GTL PI+ L P L P + F + + + I P+ +TRG
Sbjct: 269 AVILAGGTLQPIEETRLRLCPSL---PPTDIKFFTCNHIVPPESILPIAVTRGPSGKAFD 325
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
++ RS P + G+ + ++++VP+G+V FF SY Y + W +G + I + K
Sbjct: 326 FSYNSRSSPSMIEELGRFICNIITVVPEGVVMFFSSYDYERRVYDAWMTTGTISRISKKK 385
Query: 566 LVFIETQDVVETTLALDNYRKAC--------DCG-RGAVFFSVARGKVAEGIDFDRHYGR 616
VF E ++ + L+ Y++A D G GA+ +V GK++EGI+F GR
Sbjct: 386 HVFREPRNSADVEAVLNKYKEAIESCSNFSQDTGVNGALLLAVVGGKISEGINFSNGMGR 445
Query: 617 LVIMFGVPF 625
VIM G+P+
Sbjct: 446 CVIMVGLPY 454
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 163 KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS 222
K S+ V G ++DL GK+ G CPY+ +R MV+ A++VV YQ LL +
Sbjct: 9 KEFSSEVSNQGALDIEDLAQIGKKIGTCPYYGSRDMVRSADLVVLPYQSLLLKSARESLG 68
Query: 223 KEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERF 273
+ K SVV+ DEAHN+ + + + L+ LS +++ ++RF
Sbjct: 69 LNL-KNSVVIIDEAHNLADSLSNMYNSKITSSQLKAV---LSCLDEYLDRF 115
>gi|255723968|ref|XP_002546913.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134804|gb|EER34358.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 812
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 95/193 (49%), Gaps = 9/193 (4%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP-----M 493
D S K + D+ + V++ GT+ P+ Y L P VS+ T + P +
Sbjct: 519 DPSAVFKEIVDQAKCVLLCGGTMEPMSDYVDYL--FPSVSKEKINRFTCGHVIPKENLEV 576
Query: 494 VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN 553
+ + FD R++P G+ ++E+ VP G+V FF SY Y+++++ +W
Sbjct: 577 FPVKQFKEFQFEFSFDKRNNPVQLNALGRFIIEICQRVPYGLVIFFPSYKYLNQVLESWK 636
Query: 554 DSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR-GAVFFSVARGKVAEGIDFDR 612
+ GIL I +K VF E D + L Y + R GA+ FSV GK++EGI+F
Sbjct: 637 N-GILSTIECYKSVFQEPSDPSKVEFTLGQYASVINTERKGAILFSVVGGKMSEGINFSD 695
Query: 613 HYGRLVIMFGVPF 625
R V+M G+P+
Sbjct: 696 DLARAVVMVGLPY 708
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 18/204 (8%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E P+K+ Y +RT ++ + ++L+L H ++ + I L SRK LC+N +V +
Sbjct: 197 ECPIKIFYSSRTHSQLNQFSSQLRLTH-FEASFEELNERTKYIPLGSRKQLCINEKVRSK 255
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFF-ENYEKAAS----AAVLPPGVYTLQD 179
N S++ AC N CEF +NY + A + + ++D
Sbjct: 256 GNDQSMNDAC-----------IDLQRNSNGCEFLPKNYMTSNVTKDFADLSLAKIRDIED 304
Query: 180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239
L G + CPY+ R V+ ++ YQ + I++ ++ K+++++ DEAHNI
Sbjct: 305 LGELGTELRICPYYSVRRGVELTEIISLPYQMIFQDTTRRILNLDV-KDAIIIIDEAHNI 363
Query: 240 DNVCIEALSVSVRRQTLEGATRNL 263
+ S+ + L ++L
Sbjct: 364 IDTITSMYSLKITADQLNKVIKSL 387
>gi|159485656|ref|XP_001700860.1| hypothetical protein CHLREDRAFT_113235 [Chlamydomonas reinhardtii]
gi|158281359|gb|EDP07114.1| predicted protein, partial [Chlamydomonas reinhardtii]
Length = 273
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 452 QSVVITSGTLSPID-LYPRLL-NFHPVVSRSFKMS-LTRDC-ICPMVLTRGSDQLPVSTK 507
+SVV+ SGTLSP+ L +LL P R F + C + +V RG LP+
Sbjct: 20 RSVVLASGTLSPVQGLVAQLLPAVPPWRLRHFACGHVVPACQLAALVAARGPTGLPLQLS 79
Query: 508 FDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLV 567
R +P V G+LLV + + VP G+V F S++Y+D+++ W +G+ + K V
Sbjct: 80 HGRRGEPRVMEELGRLLVNICTAVPAGVVVFAPSFAYLDQLVCAWQRTGVYGALASRKRV 139
Query: 568 FIETQDVVETTLALDNYRKACDCGR-----------GAVFFSVARGKVAEGIDFDRHYGR 616
F+E + + + C C + GA+ SV GK++EGI+F GR
Sbjct: 140 FVEPRTAGQVA-PVQLCAAVCRCAQGVAAAPRRRLTGALLLSVVGGKLSEGINFGDDLGR 198
Query: 617 LVIMFGVPF 625
V++ G+P+
Sbjct: 199 CVVVLGLPY 207
>gi|385805025|ref|YP_005841425.1| DNA repair helicase Rad3 [Haloquadratum walsbyi C23]
gi|339730517|emb|CCC41858.1| DNA repair helicase Rad3 [Haloquadratum walsbyi C23]
Length = 731
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 151/658 (22%), Positives = 265/658 (40%), Gaps = 96/658 (14%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
+FPY+ YP Q+S M E+ ALD + L E GTGKT++ L +Y K
Sbjct: 10 FFPYEEPYPNQHSAMSEIAEALDEQRDVLFEGAPGTGKTLSALCPAIAYARQTD----KT 65
Query: 71 IYCTRTVHE-MEKTLAELK-LLHN----------------------YQT-RHLGPAAKIL 105
+ T VH+ M + +A+ + ++H+ YQ + L + L
Sbjct: 66 VVITTNVHQQMRQFVADARAIVHSGIDTIRAVVFKGKSSMCHIDVGYQECQTLRDTTRSL 125
Query: 106 AIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTA--SWVRALAAENPNIET---CEFFEN 160
R L + L E R+ D A R+A + ++ +E ++ + CE++ N
Sbjct: 126 VDKERERTQLREQATALLDEIREGNDGAASARSAVTDELESVTSEIEDLSSGNICEYYRN 185
Query: 161 YEKAASAAV-----LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP 215
A A L V T +++ A+ +Q+ C Y L + ++ ++V+ +Y +LLDP
Sbjct: 186 NLTEADATEAFFQWLFDDVRTAEEIYAYAEQRQLCGYELLKEGIEGVDLVICNYHHLLDP 245
Query: 216 KVAGIISKEMQKES---VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIER 272
+ + + ++ V +FDEAHNI++ + ++ TLE A L+ I ++ E
Sbjct: 246 AIREQFFRWLGRDPDDIVTIFDEAHNIESAARDHAGRTLTENTLEEA---LTEI-KDCED 301
Query: 273 FKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHV 332
+A A + + AL+ A + + S+ V RR + L
Sbjct: 302 SRAEPAANVFEAFL-----TALQTTYADAFGFGEREQVTSEWYDLTVANTDRRDDLTLEF 356
Query: 333 LRRLVQYLRGRLETE-NVEKEGPVSFVASI-TAHAGIDQKTLRFCYERLHSLMLTLEITD 390
L+ QY ++TE ++ ++ S + TA+ + T + C + L +TD
Sbjct: 357 LQ---QYEGRGIDTEIDLARQLAESIDSRYETAYKNGETATRKECQALHAATFLNAWMTD 413
Query: 391 TDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR 450
+D VGT+ +I DE + +C ++ +FD
Sbjct: 414 SD-------------TVGTH----PLISVRRDETTNEVYARAELYTCIPRAVTAD-LFDE 455
Query: 451 FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKF-- 508
+ ++ S TL P D+ +L V +++++ P R L V T
Sbjct: 456 VHASILMSATLRPFDVAEDVLGLSNPVQMAYELAY------PAENRR---TLAVKTPALF 506
Query: 509 -DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLV 567
R+DP L + P + FF SY+ E AT ++ QH V
Sbjct: 507 SSARNDPDTQSIIADTLADAARFTPGNALFFFPSYAEA-ERYAT--------QLRQHDAV 557
Query: 568 FIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ E+ + R++ G V + G +AEG+ FD R V + GVP+
Sbjct: 558 SKPVM-LDESGTETEPLRQSFVDQNGCVLCTSLWGTLAEGVSFDDDDARTVAVVGVPY 614
>gi|440797062|gb|ELR18157.1| DNA repair helicase (rad3) subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 1026
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 25/190 (13%)
Query: 452 QSVVITSGTLSPIDL--------YP-RLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQL 502
+++++TSGTLSP+ +P RL N H + + VL+ G
Sbjct: 476 RNIILTSGTLSPLASTAAELKIPFPIRLENSHVIQPSQVWVG---------VLSNGPSDY 526
Query: 503 PVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN-------DS 555
P+++ F R + G L+ + IVP+G++ FF SY+ + + W +
Sbjct: 527 PLNSSFKTRETEDYKQALGNALINFMRIVPNGLLVFFPSYTALTTCVDAWKRPDEQARNG 586
Query: 556 GILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYG 615
I + + ++K IE ++ + LA+++Y GAVFF+V RGKV+EG+DF G
Sbjct: 587 SIWERMCRYKQAIIEPREAFQFKLAMEDYYAKVKTEGGAVFFAVCRGKVSEGLDFSDDNG 646
Query: 616 RLVIMFGVPF 625
R V++ G+PF
Sbjct: 647 RAVVITGLPF 656
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 15/202 (7%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E P ++IY +RT ++ + + ELK Y R L SR+ LCVN V+
Sbjct: 129 EKPPRIIYTSRTHSQLTQVMKELKRTA-YSPR---------MTVLGSRRQLCVNPDVVNT 178
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT-LQDLRAF 183
RD CR S +++ E + G T +++L
Sbjct: 179 PGRDH---KCRSLVTSRRCDYYNRLDDLKKSEQLRGSCNGMFGEEVAEGEITDIEELLQS 235
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G+ +G C ++LAR + A+++ Y YL+DP + + ++ + +V++FDEAHN+++VC
Sbjct: 236 GRDRGLCAFYLARELQYSADIIFAPYNYLIDPAIRRSLGVDL-RGAVIIFDEAHNVESVC 294
Query: 244 IEALSVSVRRQTLEGATRNLSR 265
++ S +R ++ A + L R
Sbjct: 295 EDSASFDLRVADMKVAIKELER 316
>gi|71029556|ref|XP_764421.1| DNA repair helicase [Theileria parva strain Muguga]
gi|68351375|gb|EAN32138.1| DNA repair helicase, putative [Theileria parva]
Length = 962
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 29/227 (12%)
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQ-----SVVITSGTLSPIDLYPRLLNFHP 475
+ E +P I V C L P F R + S+++TSGTL P+++ R L
Sbjct: 521 YREDIPEIIPKVFTFKC----LQPVPTFVRLKNGGVRSIILTSGTLGPLEVLERHLGGGH 576
Query: 476 VVSRSFKMSLTRD-CICPMVLTRGS------DQLPVSTKFDMRSDPGVARNYGKLLVEMV 528
V F + L + I P + G+ D +S+ F+ R+ G ++ V
Sbjct: 577 V---KFDVKLQNEHVIDPSRVWVGAISGNAEDPNMLSSTFNTRNKMNYITELGNAVLSFV 633
Query: 529 SIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV----------VETT 578
VP G++ FF SYS M+ + W GI +I K +++E + V V T
Sbjct: 634 KNVPGGVLVFFGSYSVMNYTASVWKKIGIYSKIEMFKRIYLEARPVENPDDKDAIPVTTM 693
Query: 579 LALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ Y++ D G G+VFF++ RG++AEGIDF Y R + + G+P+
Sbjct: 694 EIFEKYKQNIDQGNGSVFFAICRGRLAEGIDFSDDYCRGIFVCGIPY 740
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 88/192 (45%), Gaps = 19/192 (9%)
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
KPE +K++Y +RT ++++ + E+ Y+ P + + L+SR LC+N
Sbjct: 131 KPER-IKIMYSSRTHSQLKQVIGEVWKSDYYE--EFNPKG-LKGVLLASRDLLCINP--- 183
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP-PGVYTLQDLR 181
S + A++ + + E CE+F +A + ++++
Sbjct: 184 ------SRGKMTGEVLANFCKQVIQE----RKCEYFNTMRGDKNAKQFQFERLMDIEEMV 233
Query: 182 AFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
GK +CPYF + + A++V+ Y Y+L P + + +++ +++ EAHN +
Sbjct: 234 QTGKDGHFCPYFSVKEGQEHADLVLLPYNYILSPDIRDAMDIDIKDSIIIID-EAHNAEQ 292
Query: 242 VCIEALSVSVRR 253
V E S +++
Sbjct: 293 VAEEGASFGIKQ 304
Score = 38.9 bits (89), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
++ + V FP+ + Y Q SYM + + + + LLE PTGTGKT++LL
Sbjct: 11 IDGIEVKFPF-HPYRCQRSYMENVIKTIKESKNALLESPTGTGKTLSLL 58
>gi|315047356|ref|XP_003173053.1| hypothetical protein MGYG_05640 [Arthroderma gypseum CBS 118893]
gi|311343439|gb|EFR02642.1| hypothetical protein MGYG_05640 [Arthroderma gypseum CBS 118893]
Length = 883
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 17/207 (8%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLY-PRLLNFHP---VVSRSFKMSLTRDCICPMV 494
D + + + + ++V++ GT+ P+D Y L ++ P + + ++ + + + +
Sbjct: 568 DPTSRFRELVEDARAVILAGGTMEPMDDYVDHLFSYVPREKIKTFTYGHVIPKINLTAIP 627
Query: 495 LTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND 554
+ +G D + FD R + + G+ + SI+PDG+V FF SY Y+ ++ W+
Sbjct: 628 IDKGMDGTEFNFTFDHRKSEKMIDSLGRTIARFCSIIPDGVVVFFPSYDYLSTVLKVWSS 687
Query: 555 -SGILKEIMQHKLVFIETQDVVETTLA------------LDNYRKACDCGRGAVFFSVAR 601
SGIL + + K +F E Q + T + L Y + D GRG + SV
Sbjct: 688 GSGILNSLSRLKPIFHEPQSMGSTNVNANTNTNTSTDSLLSQYSASIDSGRGGLLLSVMG 747
Query: 602 GKVAEGIDFDRHYGRLVIMFGVPFQYT 628
GK++EGI+F GR VI+ G+PF T
Sbjct: 748 GKLSEGINFSDSLGRGVIVVGLPFPNT 774
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 113/272 (41%), Gaps = 42/272 (15%)
Query: 46 TGKTIALLSLITSYV----LSKPENPVKLIYCTRTVHEMEKTLAELK-----------LL 90
+ T+ALL + + + E VK+IYC+RT ++ + E++ L
Sbjct: 188 SSDTLALLERLKGPTQQTDVDEDEESVKIIYCSRTHSQLIQFAQEMRRVMPISSIPPGLG 247
Query: 91 HNYQTRHLGPAAK----ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
+ + G + I L+SRK LC+N V + +++ C L
Sbjct: 248 DDLKEEKEGKVPEEGEWIKHTPLASRKTLCINPSVRTLSSATAINERC----------LE 297
Query: 147 AENPNI---ETCEFFENYEKAASAAV----LPPGVYTLQDLRAFGKQQGWCPYFLARHMV 199
+ PN+ C + E + L V ++DL G + G CPY+ +R +
Sbjct: 298 LQRPNVAAEHKCPYLPTKENELKTSQFQDHLLSRVNDIEDLPPLGTKVGICPYYASRTAI 357
Query: 200 QFA--NVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLE 257
+ + VV Y LL ++ +K SV+V DEAHN+ + + SV+V +L
Sbjct: 358 RASATEVVTLPYSLLLQQSAREALNLSAKK-SVIVIDEAHNLIDAIVNIHSVTV---SLS 413
Query: 258 GATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
L+++ RFK GR R +L+
Sbjct: 414 QVKTALAQVTTYARRFKTRLKGRNRVYIAQLI 445
>gi|383850034|ref|XP_003700633.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Megachile rotundata]
Length = 861
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 128/607 (21%), Positives = 250/607 (41%), Gaps = 91/607 (14%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK-ILAIGLSSRKNLCVNSRVLAAEN 126
K+ +C+RT ++ + + ELK P +K + + L+SR+N C+N V ++
Sbjct: 196 TKIFFCSRTHSQLSQFIRELKK---------SPYSKNVSVVPLASRQNYCINKNVRKLKH 246
Query: 127 RDSVDAAC---RKRTASWVRALAAENPNIET-CEFFENYEKAASAAVLPPGVYTLQDLRA 182
++ ++ C +K+ A+ + + T C F + L + ++++
Sbjct: 247 QNLINEQCLQLQKKKATVKDEKDVKRKKVATSCPFMPGNQDLLIGETLIE-IQDIEEIVQ 305
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G+ C Y+ AR V +++ Y +L K I S K ++++ DEAHN+
Sbjct: 306 KGEDYKTCAYYAARKAVPTGQLILVPYNSVLH-KNTRISSGINLKGNILIIDEAHNL--- 361
Query: 243 CIEALSVSVRRQTLEGATRNL----SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+EA+ R ++ RNL S+++Q ++RF+ + + N+L L+ L
Sbjct: 362 -LEAIE---RMHSVMITGRNLLHCHSQLSQYLKRFQTLFSAKNLLYLNQL--SFCLKKLL 415
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
I A + + P D + + E F ++ ++T N+ + +
Sbjct: 416 TIFGA--TTKSTPDDSISAETISKSYKIEEF---------EIKTEIDTINIFE------L 458
Query: 359 ASITAHAGIDQKTLRFCYE---RLHSLMLTLEITDTDEFLH-IQTICDFATLVGTYTRGF 414
H+ + K F + ++ + + FLH I+T T T
Sbjct: 459 LKFIKHSRLSHKLQSFVEQYDTKIKVCKPDEKTSGIKHFLHSIKTKSSECT-----TDTV 513
Query: 415 SIIIEPFDERMPHIPD----PVLQLSCHDASLAVKPVFDRFQSV---------------- 454
+ ++E P + LQ C D + V P QS+
Sbjct: 514 AAVVEEEQSNNPLLLIISFLESLQNRCTDGRIFVIPGATLGQSIIKFFLLNPAAHFHDIV 573
Query: 455 ------VITSGTLSPIDLYPRLLNF------HPVVSRSFKMSLTRDCICPMVLTRGSDQL 502
++ GT++P++ + L +V+ S + ++ I + T G +
Sbjct: 574 QDSRAVILAGGTMAPMNEFTEQLFIAAGAAPERIVTFSCDHVVPKENIICSIATHGPTGV 633
Query: 503 PVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM 562
+ R + + G+ L+ + +IVP GIV F SY++ + + SGI+ +I
Sbjct: 634 EFEFNYQNRQNIKLMDELGRALLNVCNIVPAGIVVFLPSYNFEELVYKHLEKSGIITKIS 693
Query: 563 QHKLVFIETQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRHYGRLV 618
K VF E + + L+ Y + R G++ FSV GK++EG++F + GR +
Sbjct: 694 AKKHVFREPKSTSQVNEILEQYAAHIEKPRSPQNGSLLFSVVGGKLSEGLNFSDNLGRCI 753
Query: 619 IMFGVPF 625
I+ G+P+
Sbjct: 754 IVVGMPY 760
>gi|428173412|gb|EKX42314.1| hypothetical protein GUITHDRAFT_141266 [Guillardia theta CCMP2712]
Length = 864
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 32/219 (14%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLL--NFHPVVSRSFKMS--LTRDCICPMV 494
+AS K + + SVV+ GT+ P+ Y + L + P R+ + + ++ I P+
Sbjct: 520 NASTHFKEILQQAHSVVLAGGTMQPMAEYVQQLMPSIQPSRFRTLSVGHVIPKENILPLT 579
Query: 495 LTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND 554
++ G L + RSDP G+L+V + + PDGIV F SYSY +E+ W
Sbjct: 580 VSTGPTGLKFDFRHGTRSDPTQKSEIGRLIVNICGLTPDGIVVFLPSYSYEEELWTYWTT 639
Query: 555 SGILKEIMQHKLVFIETQDVVETTLALDNYR-------------KACDCG---------- 591
G++ +I + K +F E + E L Y K C
Sbjct: 640 EGLVDKIAKKKKIFREPRSSGEVEAVLRQYEECIRTQGTENTSPKDSSCMVDTRILNRVT 699
Query: 592 -----RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA+ V GK++EGI+F GR VI+ G+PF
Sbjct: 700 DRFPVTGAILLCVVGGKLSEGINFSDELGRCVIVVGLPF 738
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 96/213 (45%), Gaps = 39/213 (18%)
Query: 60 VLSKPENPVKL---------IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLS 110
+ KPEN +L IYC+RT ++ + + E+K + A+ L+
Sbjct: 177 LFQKPENEDRLEDEYDVRKVIYCSRTHSQLSQFMNEVKRTQ--------WGKDLKAVSLA 228
Query: 111 SRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIE-------------TCEF 157
SRK +C+N +V + ++ ++AAC + + NIE C F
Sbjct: 229 SRKGMCINPKVSSLKSSTRINAAC----LDLQKGVEDTESNIEDAPSALKAKKKKSNCPF 284
Query: 158 FENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKV 217
++ + ++ V ++D+ GK+ CPY+ +R ++ A +V Y L+
Sbjct: 285 YDQDRQLDLRDMILARVQDIEDIVENGKKVQCCPYYASRAAIRAAELVTIPYTSLVHKAT 344
Query: 218 AGIISKEMQKESVVVFDEAHNIDNVCIEALSVS 250
+ +++ +VV+ DEAHN+ IEA++ +
Sbjct: 345 REALGLKLEG-NVVIIDEAHNL----IEAVTTT 372
>gi|358369042|dbj|GAA85657.1| DEAD_2 protein [Aspergillus kawachii IFO 4308]
Length = 519
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 12/186 (6%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSR----SFKMSLTRDCICPMVLTRGSDQLPVSTK 507
++V++ GT+SP+ Y L + SR S+ + + + L RG
Sbjct: 39 RAVILAGGTMSPMTDYMNHLFSYVPASRLDTFSYGHVIPPENLIAHTLVRGVQGSEFDFT 98
Query: 508 FDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE------- 560
+D+R + + G+ + + ++PDG+V FF SY Y+ +++ W + ++
Sbjct: 99 YDVRDSEKMIMDLGRTIATLCHVIPDGVVAFFPSYDYLGRVLSIWKKPMLSEQGQTVYGL 158
Query: 561 IMQHKLVFIETQDVVETTLAL-DNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVI 619
I Q K + E++D+ TT L Y K D GRGA+ SV GK++EGI+F GR V+
Sbjct: 159 IGQKKPILSESRDMTVTTEELLQTYAKTVDSGRGALLLSVVGGKLSEGINFSDKLGRAVL 218
Query: 620 MFGVPF 625
+ G+PF
Sbjct: 219 IVGLPF 224
>gi|413948835|gb|AFW81484.1| hypothetical protein ZEAMMB73_466424 [Zea mays]
Length = 437
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 19/188 (10%)
Query: 454 VVITSGTLSPID-----LYPRLLNFHPVVSRSFKMS--LTRDCICPMVLTRGSDQLPVST 506
V++ GTL PI+ L P L P + F + + + I P+ +TRG +
Sbjct: 227 VILAGGTLQPIEETRFRLCPSL---PPTDIKFFTCNHIVPPESILPIAVTRGPSGMAFDF 283
Query: 507 KFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKL 566
++ RS P + G+ + ++++VP+G+V FF SY Y + W +G + I + K
Sbjct: 284 SYNSRSSPSMIEELGRFICNIITVVPEGVVMFFSSYDYERRVYDAWMTTGTISRISKKKH 343
Query: 567 VFIETQDVVETTLALDNYRKAC--------DCG-RGAVFFSVARGKVAEGIDFDRHYGRL 617
VF E ++ + L+ Y++A D G GA+ +V GK+++GI+F GR
Sbjct: 344 VFREPRNSADVEAVLNKYKEAIESCSNFSQDTGVNGALLLAVVGGKISDGINFSNGMGRC 403
Query: 618 VIMFGVPF 625
VIM G+P+
Sbjct: 404 VIMVGLPY 411
>gi|300122782|emb|CBK23799.2| unnamed protein product [Blastocystis hominis]
Length = 155
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 76/112 (67%), Gaps = 5/112 (4%)
Query: 14 YDNIYPEQYSYMLELKRALDA---KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
Y++IYPEQY YM +LK+ L+ KGH LLEMPTGTGKT+ + +L + S P+ KL
Sbjct: 19 YESIYPEQYEYMQQLKQVLETSEQKGHALLEMPTGTGKTVCIFALYLAMKHSYPDLG-KL 77
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK-ILAIGLSSRKNLCVNSRV 121
IYCTRT+ E+++ + ELK + ++ L + IL + LSSR+NLC++ ++
Sbjct: 78 IYCTRTIAELKQCMEELKRVVAFRKSKLEYRYRSILGVCLSSRRNLCIHPKI 129
>gi|300176870|emb|CBK25439.2| unnamed protein product [Blastocystis hominis]
Length = 1177
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 30/225 (13%)
Query: 429 PDPV---LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN--FHPVVSRSFKM 483
P+P L + C +A++ + + S+V+TSGTL+P+ + LN F + +
Sbjct: 528 PEPANVELSILCLNAAIVFEDIKSTCSSIVLTSGTLAPLSSFANELNIPFQNQMEGIASI 587
Query: 484 SLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYS 543
+ R +V + + L S + RS+P G +L++ V ++P G+V FF SYS
Sbjct: 588 DVHRQLFAAVVPSYHNVSLLGS--YQNRSNPLYMDAVGDVLLDCVQVIPAGVVFFFPSYS 645
Query: 544 YMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD-------------- 589
+++ ++ W + + + Q K V+IE +D V + L NY D
Sbjct: 646 VLNQFLSYWKKTKFIDRLSQIKQVYIEQRDAVGFSAVLTNYTTFMDNFCTFFPPFSRPDK 705
Query: 590 CGR---------GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
C GA+FF V RGK++EGIDF + R VI +P+
Sbjct: 706 CKERGIQPSSVTGALFFGVCRGKISEGIDFKDYMARAVISLSIPY 750
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 142/331 (42%), Gaps = 75/331 (22%)
Query: 3 FKLEDVTVYFPYDNI-YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL 61
++ + V FP D I + Q S M + ++L + ++E PTGTGKT+A+L S++
Sbjct: 46 YRFYGLEVEFPQDRIPFSSQKSTMTAIVKSLSRNENAIVESPTGTGKTLAILCSSLSWI- 104
Query: 62 SKPENPVK------------------------------------------LIYCTRTVHE 79
K P++ + YC+RT +
Sbjct: 105 -KSTQPIEATQPSEIPPVPEATQSSDYEAIDKLREKLRALNNSLTKQTHHIYYCSRTHSQ 163
Query: 80 MEKTLAELKLLH--NYQTRHLGPAAKILAI------------GLSSRKNLCVNSRVLAAE 125
+++ + ELK + Y R G A L + L+S+ + C+N VL
Sbjct: 164 LDQAIQELKRSNFLMYTHRSEGRIALSLPVLVTEQQRELSMTVLASKSHYCINKAVLENP 223
Query: 126 NRDSVDAAC-RKRTASWVRALAAENP-NIETCEFFENYEKAASAAVLPPGVYTLQDLRAF 183
N SVD C +R +++ E ++ C+F E+ + A GV ++D++
Sbjct: 224 NF-SVDEICGHERELAFLSQGETEKSFDMNFCKF-RKQERIFACAKSIHGVLDIEDMKRL 281
Query: 184 GKQQGWCPY-----------FLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
+++ CPY F+AR ++ + ++ Y Y++DP++ +S + K S ++
Sbjct: 282 CQRKNVCPYVCRIRFRIDVKFVARELMTKSQIIFAPYNYVIDPQIRDSMSINLAKSS-II 340
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
FDEAHNI + ++++ + + T +
Sbjct: 341 FDEAHNILTTARSSAGMTIKLREFQEKTNHF 371
>gi|300175034|emb|CBK20345.2| unnamed protein product [Blastocystis hominis]
Length = 152
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 76/112 (67%), Gaps = 5/112 (4%)
Query: 14 YDNIYPEQYSYMLELKRALDA---KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
Y++IYPEQY YM +LK+ L+ KGH LLEMPTGTGKT+ + +L + S P+ KL
Sbjct: 16 YESIYPEQYEYMQQLKQVLETSEQKGHALLEMPTGTGKTVCIFALYLAMKHSYPDLG-KL 74
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK-ILAIGLSSRKNLCVNSRV 121
IYCTRT+ E+++ + ELK + ++ L + IL + LSSR+NLC++ ++
Sbjct: 75 IYCTRTIAELKQCMEELKRVVAFRKSKLEYRYRSILGVCLSSRRNLCIHPKI 126
>gi|240102854|ref|YP_002959163.1| DNA repair helicase [Thermococcus gammatolerans EJ3]
gi|239910408|gb|ACS33299.1| DNA repair helicase, ERCC2/XPD/rad3/TFIIH helicase beta
subunit-like protein (rad3) [Thermococcus gammatolerans
EJ3]
Length = 640
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 147/633 (23%), Positives = 267/633 (42%), Gaps = 114/633 (18%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL 70
Y PY+ P Q ++ ++ A++ + ++E PTG GKT+++L+ + E K+
Sbjct: 6 YLPYEP-RPHQLEFIELVRGAVERGENVIIEAPTGFGKTVSVLAGVLPVA---KELGFKV 61
Query: 71 IYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSV 130
+Y RT +M++ + ELK ++ A++ + + SRK LC+++ L D+
Sbjct: 62 LYLARTHRQMDRVIEELKAINR--------KARVSGVEMRSRKELCLHN-YLREYTSDAY 112
Query: 131 DA--ACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVL-------PPGVYTLQDLR 181
A C+ S C+F+EN +K + PG ++
Sbjct: 113 TAMVVCKNLRKSG------------KCQFYENEKKKKAEVEELTRFFLETPG--HPAEIL 158
Query: 182 AFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KESVVVFDEAHN 238
+ + CPY + R + A+V+V SY Y L+P + + + +V+FDEAHN
Sbjct: 159 NYAETLEVCPYDVTRMIAYKADVIVASYLYALNPTIRENFMTYLDLDYSDLIVIFDEAHN 218
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+ + I ALS + T ++R +E + ++ + + + + +E L
Sbjct: 219 LPDQAISALSDRMSIHT-------VNRAIKEADEYREHEIANFLSIFGKGLEIL------ 265
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVL----RRLVQYLRGRLETENVEKEGP 354
++ S + I E V G H ++VL R LV+ L + + +E
Sbjct: 266 -YSEKLGSRDVEETPIAPELVFG------HVMNVLGLDTRWLVKTLNEMVAVGDSIREDR 318
Query: 355 VSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGF 414
++ ++ G + F L+L L + D++L + T RG
Sbjct: 319 INKNKPPRSYIG---RVGEF-------LLLWLSLIGRDDYLFLL----------TRERGL 358
Query: 415 SIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFH 474
S L+L D S A+ + D QS V SGTL+P++ + +++
Sbjct: 359 S-----------------LELVALDPSKALTFIRD-VQSAVFMSGTLTPLEAFRDVMDIE 400
Query: 475 PVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDG 534
+ F + R+ +V VST+ + RS + R + +VE V ++P
Sbjct: 401 NARLKKFPRMVKRENAQVLVAK------DVSTRGEERS-LDLYRRMTEYIVEAVKLIPKN 453
Query: 535 IVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV--VETTLALDNYRKACDCGR 592
+ F SY + +++ N L+E K +FIE Q E + ++ KA G
Sbjct: 454 VGVFTASYEVLQGLLSA-NLQVRLEET--GKAIFIERQGTSSAENDAMVASF-KAHARGN 509
Query: 593 GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GAV V G+ +EG D+ VI+ G+P+
Sbjct: 510 GAVLLGVMGGRNSEGQDYSGDEMNGVILVGIPY 542
>gi|148706380|gb|EDL38327.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase
homolog, S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 942
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+++ G
Sbjct: 643 VVKECRAVVIAGGTMQPMSDFREQLLACSGVEAGRVVEFSCGHVIPPDNILPLIICSGPS 702
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCF SY Y+ ++ A W+ +G+L
Sbjct: 703 NQQLEFTYQRRELPQMVEETGRILCNLCNVVPGGVVCFLPSYEYLRQVHAHWDKTGLLTR 762
Query: 561 IMQHKLVFIETQDVVETTLALDNYRK---ACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y K +C GA+ SV GK++EGI+F
Sbjct: 763 LSVRKKIFQEPKRASQVEQVLMAYSKCIMSCSHSEGHLTGALLLSVVGGKMSEGINFSDD 822
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 823 LGRCVVMVGMPY 834
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 26/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAE-LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
K+ YC+RT ++ + + E LK +TR + L SR+ LCVN V +
Sbjct: 261 TKIYYCSRTHSQLAQFVREVLKSPFGKETR---------LVSLGSRQTLCVNEDVKNLGS 311
Query: 127 RDSVDAAC-------RKRTASWVRALAAENPNIET-CEFFENYEKAASAAVLPPGVYTLQ 178
++ C R++ + + I+T C F+ + + + V ++
Sbjct: 312 VQLMNDRCVDMQRSKREKNGTGEDKPKRKRQKIQTSCPFYNHEQMELLRDEILLEVKDME 371
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV Y LL +Q + VV+ DEAHN
Sbjct: 372 QLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRLQGQ-VVIIDEAHN 430
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + S V L A S++ Q +ER++ RL+A+
Sbjct: 431 LIDTITNIHSTEVNGSQLCQAH---SQLLQYMERYRK----RLKAK 469
>gi|170029991|ref|XP_001842874.1| fanconi anemia group J protein [Culex quinquefasciatus]
gi|167865334|gb|EDS28717.1| fanconi anemia group J protein [Culex quinquefasciatus]
Length = 873
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 4/177 (2%)
Query: 452 QSVVITSGTLSPID-LYPRLLN--FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKF 508
+S+++ GT+ PID L +L V RS++ + D + P+ + +G + +
Sbjct: 592 RSIILAGGTMHPIDELTEQLFKDCAERVEIRSYRHVVPADAVLPLAIGKGPSGKELLFNY 651
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
R + + +L + +VP GIVCFF SY Y+D+ AT +G L I + K VF
Sbjct: 652 ANRQNKELLNELSSVLANLCQVVPHGIVCFFASYDYLDQFYATIQTNGRLDRITERKRVF 711
Query: 569 IETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
E + L Y +A GA+ SV GK++EG++F GR V++ G+P+
Sbjct: 712 REPRGTTNVDSILAEYAQAARHS-GALMLSVVGGKLSEGLNFADELGRCVVVVGLPY 767
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 42/233 (18%)
Query: 66 NPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAE 125
PV++I+C+RT ++ + + E+ R +I ++SR+NLC+N V +
Sbjct: 193 QPVQVIFCSRTHSQLSQVVNEV--------RRTEFGKQIRLTMIASRQNLCINQEVRKLK 244
Query: 126 NRDSVDAACRKRTASWVRALAA-ENPNI----------ETCEFFENYEKAASAAVLPPGV 174
V+ C + + +A E+ N+ + C F Y + A + +
Sbjct: 245 TNTLVNERCLEMQKNSGKATCKDEDGNVSKKRKVSSSAQKCPF---YNREAIEELKNNSL 301
Query: 175 YTLQDLR---AFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVV 231
+ +QD+ +F KQ+ CPY+ +R V +++ YQ LL K ++ K +V+
Sbjct: 302 FEVQDIEELVSFAKQEKACPYYASRAAVGDTQLLMVPYQNLLHRKTREQTGLDI-KNAVI 360
Query: 232 VFDEAHNIDNVCIEALSVSVRRQTLEGA----------------TRNLSRINQ 268
+ DEAHN+ + S V + L+ A T+NL +INQ
Sbjct: 361 IVDEAHNLLDTISSIHSQEVSLECLQQARLQLTAYKKQYFQRFSTKNLLKINQ 413
>gi|297743271|emb|CBI36138.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 97/198 (48%), Gaps = 22/198 (11%)
Query: 447 VFDRFQSVVITSGTLSPID-----LYPRLLN--FHPVVSRSFKMSLTRDCICPMVLTRGS 499
+ D+ +V++ GTL PI+ L+P L + FH S + + I P+ L+ G
Sbjct: 523 IVDQAHAVILAGGTLQPIEETRERLFPWLTSDQFHFF---SCSHIIPPESILPVALSHGP 579
Query: 500 DQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILK 559
+ RS + G LL +V++VP+GIV FF S+ Y ++ W SGIL+
Sbjct: 580 SGQSFDFSYSSRSSSIMIEELGLLLCNLVTVVPEGIVVFFSSFDYEGQVHDAWKASGILE 639
Query: 560 EIMQHKLVFIETQDVVETTLALDNYRKACDCG------------RGAVFFSVARGKVAEG 607
IM+ K VF E + + L Y++A D GA+ +V GK++EG
Sbjct: 640 RIMKKKCVFREPRKNTDVEFVLKEYKEAIDKSSDRNQKEDPVPQNGAILLAVVGGKISEG 699
Query: 608 IDFDRHYGRLVIMFGVPF 625
I+F GR ++M G+P+
Sbjct: 700 INFSDGMGRCIVMVGLPY 717
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 25/220 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
+K+ +C+RT ++ + + EL+ G K++ +G SRK C+N VL N
Sbjct: 148 LKIYFCSRTHSQLSQFVKELR------KTIFGNEMKVVCLG--SRKISCINEEVLKLGNS 199
Query: 128 DSVDAAC------RKRTASWVRALAAENPNIET-----CEFFENY--EKAASAAVLPPGV 174
++ C +K+ S ++ L +E T C N+ +K + + G
Sbjct: 200 TRINERCLELQQNKKKEVSKLKNLGSEGRIRRTKASSGCPMLRNHKLQKQFRSEISQEGA 259
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
++DL G++ G CPY+ +R ++ A++VV YQ LL + + K ++V+ D
Sbjct: 260 LDIEDLVHLGRRMGTCPYYGSRSIIPAADLVVLPYQSLLSKSSRESLGLNL-KNNIVIID 318
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
EAHN+ + I + LE S I Q ++RF+
Sbjct: 319 EAHNLADSLISMYDAKITSSQLEHVH---SHIKQYLQRFR 355
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE 65
FPY+ Y Q +M L R+L+ G +LE PTGTGKT++++ +++ + +
Sbjct: 12 FPYEP-YSIQIDFMKALYRSLNKGGVSMLESPTGTGKTLSIICSALQWLVDRKQ 64
>gi|225442629|ref|XP_002279503.1| PREDICTED: probable ATP-dependent RNA helicase DDX11-like [Vitis
vinifera]
Length = 961
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 97/198 (48%), Gaps = 22/198 (11%)
Query: 447 VFDRFQSVVITSGTLSPID-----LYPRLLN--FHPVVSRSFKMSLTRDCICPMVLTRGS 499
+ D+ +V++ GTL PI+ L+P L + FH S + + I P+ L+ G
Sbjct: 626 IVDQAHAVILAGGTLQPIEETRERLFPWLTSDQFHFF---SCSHIIPPESILPVALSHGP 682
Query: 500 DQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILK 559
+ RS + G LL +V++VP+GIV FF S+ Y ++ W SGIL+
Sbjct: 683 SGQSFDFSYSSRSSSIMIEELGLLLCNLVTVVPEGIVVFFSSFDYEGQVHDAWKASGILE 742
Query: 560 EIMQHKLVFIETQDVVETTLALDNYRKACDCG------------RGAVFFSVARGKVAEG 607
IM+ K VF E + + L Y++A D GA+ +V GK++EG
Sbjct: 743 RIMKKKCVFREPRKNTDVEFVLKEYKEAIDKSSDRNQKEDPVPQNGAILLAVVGGKISEG 802
Query: 608 IDFDRHYGRLVIMFGVPF 625
I+F GR ++M G+P+
Sbjct: 803 INFSDGMGRCIVMVGLPY 820
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 25/220 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
+K+ +C+RT ++ + + EL+ G K++ +G SRK C+N VL N
Sbjct: 251 LKIYFCSRTHSQLSQFVKELR------KTIFGNEMKVVCLG--SRKISCINEEVLKLGNS 302
Query: 128 DSVDAAC------RKRTASWVRALAAENPNIET-----CEFFENY--EKAASAAVLPPGV 174
++ C +K+ S ++ L +E T C N+ +K + + G
Sbjct: 303 TRINERCLELQQNKKKEVSKLKNLGSEGRIRRTKASSGCPMLRNHKLQKQFRSEISQEGA 362
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
++DL G++ G CPY+ +R ++ A++VV YQ LL + + K ++V+ D
Sbjct: 363 LDIEDLVHLGRRMGTCPYYGSRSIIPAADLVVLPYQSLLSKSSRESLGLNL-KNNIVIID 421
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
EAHN+ + I + LE S I Q ++RF+
Sbjct: 422 EAHNLADSLISMYDAKITSSQLEHVH---SHIKQYLQRFR 458
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE 65
FPY+ Y Q +M L R+L+ G +LE PTGTGKT++++ +++ + +
Sbjct: 76 FPYEP-YSIQIDFMKALYRSLNKGGVSMLESPTGTGKTLSIICSALQWLVDRKQ 128
>gi|51491862|ref|NP_001003919.1| probable ATP-dependent RNA helicase DDX11 [Mus musculus]
gi|81884425|sp|Q6AXC6.1|DDX11_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX11; AltName:
Full=DEAD/H box protein 11
gi|50926041|gb|AAH79656.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase
homolog, S. cerevisiae) [Mus musculus]
Length = 880
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL VV S + D I P+++ G
Sbjct: 581 VVKECRAVVIAGGTMQPMSDFREQLLACSGVEAGRVVEFSCGHVIPPDNILPLIICSGPS 640
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCF SY Y+ ++ A W+ +G+L
Sbjct: 641 NQQLEFTYQRRELPQMVEETGRILCNLCNVVPGGVVCFLPSYEYLRQVHAHWDKTGLLTR 700
Query: 561 IMQHKLVFIETQDVVETTLALDNYRK---ACDCGR----GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y K +C GA+ SV GK++EGI+F
Sbjct: 701 LSVRKKIFQEPKRASQVEQVLMAYSKCIMSCSHSEGHLTGALLLSVVGGKMSEGINFSDD 760
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 761 LGRCVVMVGMPY 772
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 26/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAE-LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAEN 126
K+ YC+RT ++ + + E LK +TR + L SR+ LCVN V +
Sbjct: 199 TKIYYCSRTHSQLAQFVREVLKSPFGKETR---------LVSLGSRQTLCVNEDVKNLGS 249
Query: 127 RDSVDAAC-------RKRTASWVRALAAENPNIET-CEFFENYEKAASAAVLPPGVYTLQ 178
++ C R++ + + I+T C F+ + + + V ++
Sbjct: 250 VQLMNDRCVDMQRSKREKNGTGEDKPKRKRQKIQTSCPFYNHEQMELLRDEILLEVKDME 309
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV Y LL +Q + VV+ DEAHN
Sbjct: 310 QLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRLQGQ-VVIIDEAHN 368
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + S V L A S++ Q +ER++ RL+A+
Sbjct: 369 LIDTITNIHSTEVNGSQLCQAH---SQLLQYMERYRK----RLKAK 407
>gi|403351116|gb|EJY75039.1| putative: regulator of telomere elongation helicase 1 [Oxytricha
trifallax]
Length = 1087
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 15/200 (7%)
Query: 435 LSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM 493
L C + S A + + + + ++++ +SGTL+P+ Y L +F + L D +
Sbjct: 462 LWCFNPSFAFQSLLEEKPRNIIFSSGTLAPLHTYESEL------ETTFPIKLENDHVIDK 515
Query: 494 -------VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIV-PDGIVCFFVSYSYM 545
+LT D + F+ R D + + L + + V GI+ F SY+ +
Sbjct: 516 DSQVMVSILTHDIDNKQIQFSFEKREDLNFYLVFARTLARIFAKVHQGGILVFLPSYTVL 575
Query: 546 DEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVA 605
++ W D+ + K++ + +FIE QD V+ + ++Y++A + AVF +V RGK++
Sbjct: 576 KKLHKVWRDNKLYKDLFKQWDIFIEPQDQVKNSALFEDYKRAIQTQKRAVFIAVCRGKLS 635
Query: 606 EGIDFDRHYGRLVIMFGVPF 625
EGIDF R VIM G+P+
Sbjct: 636 EGIDFTDDVARCVIMAGIPY 655
>gi|320165089|gb|EFW41988.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 950
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 66/118 (55%)
Query: 508 FDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLV 567
F R D V G+ L ++V+ VP+G+VCFF SY YM +++ W + +L+++ K V
Sbjct: 711 FRFRHDTRVMDELGRALCDIVAWVPEGVVCFFQSYDYMAKVLDRWRQTEVLQQVQLKKRV 770
Query: 568 FIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
F E + L Y + G GA+ F V GK++EGI+F GR V+M G+PF
Sbjct: 771 FQEPRVAGNVDSVLREYSECIRAGNGAILFCVVGGKLSEGINFSDGLGRCVVMVGLPF 828
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 21/233 (9%)
Query: 45 GTGKTIALLSLITSYVLSKPENPV----KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGP 100
G+GK A S V + V K+ YC+RT ++ + + E++ G
Sbjct: 205 GSGKFDARRKKKASAVRDDEDEEVPDVAKIYYCSRTHSQLNQFVQEVR------KSPFGE 258
Query: 101 AAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFEN 160
K++ +G SRKNLCVN V E + ++ C +R A+++ + C + N
Sbjct: 259 TTKVVVLG--SRKNLCVNDDVRKLEAVERINERCDD-----LRKNASKSKEAKGCPYLTN 311
Query: 161 YEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGI 220
+ + +++L GK+ G C Y+ +R ++ A++V YQ LL
Sbjct: 312 DSVSTLRDSILVHTTDIEELVNRGKKMGACAYYASRRAIRAAHLVALPYQMLLHHSTREA 371
Query: 221 ISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERF 273
+ + + VV+ DEAHN+ + SV++ + A S++ Q E++
Sbjct: 372 LGINLSNQ-VVIVDEAHNVMETLNDIYSVTITLAVIRAAQ---SQLEQYAEKY 420
>gi|302689377|ref|XP_003034368.1| hypothetical protein SCHCODRAFT_53201 [Schizophyllum commune H4-8]
gi|300108063|gb|EFI99465.1| hypothetical protein SCHCODRAFT_53201 [Schizophyllum commune H4-8]
Length = 869
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 12/190 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLLNFHPVVSRSFKMS----LTRDCICPMVLTRGSDQ 501
V D ++VV+ GT+SP+ D++ +L + H R S + + +V+T+G
Sbjct: 567 VVDEARAVVLAGGTMSPMSDVFNQLFS-HVAAERLTSFSCGHIIPSSNLQTLVVTKGPKG 625
Query: 502 LPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEI 561
P+ K + + DP G++L +V + P G+V FF SYS+++ A W SG L +
Sbjct: 626 GPLEFKAERQKDPVAIEELGQILFNLVCVTPKGMVVFFPSYSFLNAAKAAWGQSGALGRL 685
Query: 562 MQHKLVFIETQDVVETTLALDNYRKA---CDCGR---GAVFFSVARGKVAEGIDFDRHYG 615
K +F E ++ + L +Y A D R GA+ F+V K++EG++F
Sbjct: 686 EGRKKIFFEPEETTDVDKVLQSYATAVHEVDPSRPKPGALLFAVIGAKLSEGLNFADDLA 745
Query: 616 RLVIMFGVPF 625
R V++ G+P+
Sbjct: 746 RSVVIVGMPY 755
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 26/187 (13%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK-----------ILAIGLSSRKNLC 116
K+ Y +RT ++ + L EL+ + + G A+ A+ L SRK LC
Sbjct: 204 TKIYYASRTHSQLSQVLPELRRVDERRASCSGKRAREEDDEVRYYTTTRAVALGSRKQLC 263
Query: 117 VNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT 176
+N +L + D +D ACR A+ AE + C + E+ A+ L +
Sbjct: 264 INDTLLKGKRVD-LDEACR--------AMLAEKKE-KRCPHLPSQEEEAAMLDLRDQILA 313
Query: 177 ----LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
+++L A G+ G CPYF +R + A +V Y L + ++ K+ +VV
Sbjct: 314 TPKDIEELAATGRASGICPYFGSRKAIDQAELVTLPYNLLFQRSAREALGIDL-KDQIVV 372
Query: 233 FDEAHNI 239
DEAHN+
Sbjct: 373 IDEAHNV 379
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
FPY Y Q M L L++K ++E PTGTGKT++LL+ +++
Sbjct: 20 FPYPQPYQIQLDLMRHLYEVLESKKISIVESPTGTGKTLSLLTASLTWL 68
>gi|348564458|ref|XP_003468022.1| PREDICTED: probable ATP-dependent RNA helicase DDX11-like [Cavia
porcellus]
Length = 424
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLLNFHPVVS-RSFKMSLTR----DCICPMVLTRGSD 500
V + ++VVI GT+ P+ D +LL + S R + S R D I P+VL
Sbjct: 131 VMEECRAVVIVGGTMQPVSDFREQLLTWAGTQSERVVEFSCGRVIPPDNILPLVLCSRPT 190
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ F R P + G++L + +++P +VCFF SY Y +++ W+ SG+L
Sbjct: 191 SQQLEFTFQQRKLPAMLEETGRILCNLCNVIPGQLVCFFPSYEYQRQVLGHWDKSGLLAR 250
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y K CG+ GA+ SV GK++EGI+F
Sbjct: 251 LTVRKKLFQEPKRASQVEQVLAAYSKCIQRCGQAGGPLTGALLLSVVGGKMSEGINFADD 310
Query: 614 YGRLVIMFG 622
GR ++M G
Sbjct: 311 LGRCMVMVG 319
>gi|307108452|gb|EFN56692.1| hypothetical protein CHLNCDRAFT_57565 [Chlorella variabilis]
Length = 1523
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 106/202 (52%), Gaps = 19/202 (9%)
Query: 435 LSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLT-------R 487
L C + ++A +PV SVV+TSGTL+P++ F + F ++L R
Sbjct: 568 LWCMNPAVAFRPVAQAAHSVVLTSGTLAPLE------GFASELGTPFAITLEAPHVVDMR 621
Query: 488 DCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDE 547
+ V+ G P++ + +++ G G+L++E + +PDG++ F SY +D+
Sbjct: 622 RQVWAGVVGAGPGGTPLNATWKNQNEAGFQDGVGRLILEGAASIPDGLLVFLPSYVLLDK 681
Query: 548 IIATWNDSGILKEIMQHKLVFIE----TQDVVETTLALDNYRKACDCGRGAVFFSVARGK 603
++A W SG+L ++ K V E QD ++ T + Y A G GA FF+V RGK
Sbjct: 682 LMARWKFSGLLAQLEALKKVVQEPRGGGQDALKKT--MQEYYAAIQAGGGAAFFAVCRGK 739
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
V+EG+DF R VI+ G+PF
Sbjct: 740 VSEGLDFADGNARGVIIVGIPF 761
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 17/148 (11%)
Query: 109 LSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAA 168
L SRK+ C+N A + S+D AC + L E+ C++F+N S+
Sbjct: 207 LGSRKHYCINQH---ATRQGSIDEACEE--------LLKES----QCQYFKNVHSFVSSG 251
Query: 169 VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
++ ++DL+ G+ CPY+ AR A V+ Y YL+DP + ++ +++
Sbjct: 252 -FQYRLHDIEDLKGMGRSNKACPYYTARKWADEAEVIFAPYSYLIDPVIRRAMAVDVEG- 309
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTL 256
++VFDEAHN+++VC EA S V T+
Sbjct: 310 CMLVFDEAHNMEDVCREAASTEVDLATM 337
>gi|452981101|gb|EME80861.1| hypothetical protein MYCFIDRAFT_20311, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 788
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 135/581 (23%), Positives = 236/581 (40%), Gaps = 85/581 (14%)
Query: 70 LIYCTRTVHEMEKTLAELKLLH-----------NYQTRHLGPAAKILAIGLSSRKNLCVN 118
+ +C+RT ++ + + ELK + Q+ L K L +G SRKNLC+N
Sbjct: 192 VFFCSRTHSQLSQFIGELKRVSLPPGLPPEDNTGEQSSKLTEELKHLTLG--SRKNLCIN 249
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP------P 172
+V +++ C + + + C F K VL
Sbjct: 250 PKVNKLAGLTAINERC-------IELQQSNRAGDKKCSFLPT--KDQQDVVLDFRDHALS 300
Query: 173 GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
+ ++DL G + CPY+ +R + A + S + L + G VVV
Sbjct: 301 RIRDIEDLAKLGSKLELCPYYASRAGIGPAEM---SAREALGISLKG---------HVVV 348
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEI-ERFKATDAGRLRAEYNRLVEG 291
DEAHN+ N S + L A L Q+ R K ++ + + R+++
Sbjct: 349 IDEAHNLMNAVEGIHSARITENQLRRAKEGLITYLQKFRNRLKGSNRTYV-TQVVRVIDS 407
Query: 292 LALRGNLPIADAWLS-NPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVE 350
L L + D +S N PS +L I L +L +Y+ E++
Sbjct: 408 L-LSFVASVKDHNMSGNVTSPSALLAGKAVDQIN--------LSKLSRYID---ESKLAR 455
Query: 351 K-EGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409
K EG ++FVA + T+ + +LM H+Q+ L+
Sbjct: 456 KVEGYIAFVAQSDTAIKKEPSTIHHAAADVPTLM------------HLQSF--LLCLMNP 501
Query: 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPR 469
G + + + ++ L L + S + + + ++V++ GT+SP++ Y +
Sbjct: 502 SKEGRFL----WSKESGNVEVQYLLL---NGSEHFRGIVEDARAVILAGGTMSPMEEYKQ 554
Query: 470 LLNFHPVVSRSFKMSLTRDCICPMVL----TRGSDQLPVSTKFDMRSDPGVARNYGKLLV 525
L P ++ K I P L Q + F R+D R G+ L+
Sbjct: 555 EL--FPYLTNEIKTFSCGHLIPPGNLFVRAISADSQGRLDFSFKSRNDTTAMR-LGQALI 611
Query: 526 EMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV-VETTLALDNY 584
++ S V G+V FF SYSY++ ++ TW ++ + K +F +++ V E T
Sbjct: 612 KIASKVQGGMVVFFPSYSYLETVLRTWTSQPLIPPLSSLKPLFSDSRSVSAEETFRSFTS 671
Query: 585 RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ RGA+ FSV GK++EGI+F GR V++ G+P+
Sbjct: 672 AIHTNPSRGALLFSVIGGKLSEGINFSDDLGRCVVVVGLPY 712
>gi|118383994|ref|XP_001025150.1| DNA repair helicase (rad3) [Tetrahymena thermophila]
gi|89306917|gb|EAS04905.1| DNA repair helicase (rad3) [Tetrahymena thermophila SB210]
Length = 1032
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 23/226 (10%)
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRF-QSVVITSGTLSPIDLYPRLLN--FHPVV 477
FD P +P L L+C + SL K + + ++ TSGTL P + + L F+ ++
Sbjct: 526 FDLEDPE--NPQLNLTCLNPSLNFKKILQQDPHCLLFTSGTLKPFNFWKTELQIPFNVIL 583
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVST-------KFDMRSDPGVARNYGKLLVEMVSI 530
+ + ++ R S ++T ++ R D + + G L E+ I
Sbjct: 584 ENKHVIDSKKQLFSAVIKGRPSKSSVITTYKQTFNFSYEKRKDQDMILDLGNALAELFEI 643
Query: 531 VPDGIVCFFVSYSYMDEIIATWNDS-----------GILKEIMQHKLVFIETQDVVETTL 579
+P+G++ F S M++ + W++ I ++ K ++ E + ET
Sbjct: 644 IPNGVLIVFPSNQLMNQCRSQWSNFFSNQNSNNQQQKIYNRLLSKKFIYWEGKTNTETMS 703
Query: 580 ALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
A+ ++R+ +G+ FF VARGK+ EGIDF R VI+ G+P+
Sbjct: 704 AMQDFRQKSKTQKGSAFFCVARGKITEGIDFADESARAVILIGLPY 749
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 127/267 (47%), Gaps = 30/267 (11%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
+ ++ VYFP+ Y Q YM + + L + H LLE PTGTGKT+++L ++ +
Sbjct: 68 INNIEVYFPHK-PYDVQVVYMESVIKCLQERTHGLLESPTGTGKTLSMLCACLGWLQQRR 126
Query: 65 EN--------PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLC 116
E P ++IYC+RT ++++ + E+K T P KI+ G SR+ C
Sbjct: 127 EQQQGIKDIIPNRIIYCSRTHSQIQQVVKEIK------TTAYQP--KIIVQG--SREQYC 176
Query: 117 VNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYT 176
+ + ++ +C+K A++ NP C +F+ S +
Sbjct: 177 IKKEFQQLKG-GLLNTSCQK-------AISQLNPQT-YCRYFKG-TMDESRDFFKLRMPD 226
Query: 177 LQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEA 236
++DLR+ G +CP++ + + +V+ Y YLLD V + + K +V++FDEA
Sbjct: 227 IEDLRSDGYNNNYCPFYHTQKVNNAVDVLFLPYNYLLDRNVMNQANINI-KNAVIIFDEA 285
Query: 237 HNIDNVCIEALSVSVRRQTLEGATRNL 263
HNI E S+ + +L A +L
Sbjct: 286 HNIHKSAEEGYSLFLNYSSLCAAEADL 312
>gi|66475604|ref|XP_627618.1| DNA repair helicase [Cryptosporidium parvum Iowa II]
gi|46229294|gb|EAK90143.1| DNA repair helicase [Cryptosporidium parvum Iowa II]
Length = 1108
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 45/235 (19%)
Query: 433 LQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
L C A+ A+ + +S++ITSGTLSP+D + + V +F + L D +
Sbjct: 533 LSFWCFSAAAALSSLVSAGVRSMIITSGTLSPLDTLAQQFSSSNV---TFDVFLENDHVI 589
Query: 492 -------PMVLTRG--SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSY 542
L RG ++ + ++ R++P + G ++ + V +PDGI+ FF SY
Sbjct: 590 DSESQLWAATLERGNSTNNTHLIGSYEARNNPSYFSSLGSVVFDCVKRIPDGILLFFGSY 649
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY----RKACD--------- 589
S MD+ + W D G+++ I K VFIE ++ E LD+Y +K D
Sbjct: 650 SLMDQAVKHWTDQGLIERIKAFKSVFIEPRNSFELGSVLDSYMDCIKKGADSSSQNDGYF 709
Query: 590 -------------------CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
G++ +V RGKV+EGI+F + R VI+ G+PF
Sbjct: 710 KDKKAKSGLSDFVLKSKRISSSGSLLIAVCRGKVSEGINFSDNACRGVIIAGLPF 764
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 132/321 (41%), Gaps = 89/321 (27%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLS---------L 55
+E +V FPYD Y Q +YM ++ +L K H LLE PTGTGKT+ LL+ L
Sbjct: 18 IEGYSVPFPYD-AYKCQINYMQKILYSLKYKKHALLESPTGTGKTLCLLASTLAFQKHFL 76
Query: 56 ITSYVLSKP-ENPV-----------------------------------KLIYCTRTVHE 79
I+ L KP EN ++IY +RT +
Sbjct: 77 ISHGSLKKPIENTSSAGVIKSEGGSIELMGVPRTVLENNKETKMDMLIPRIIYSSRTHSQ 136
Query: 80 MEKTLAELKL-----------------------LHNYQTRHLGPAAKIL--AIGLSSRKN 114
+ + + ELK + R + K L A L SR
Sbjct: 137 LSQVMRELKSSGISDGFTIELFDTDAENKAKIEKSTSKKRPVIKGGKKLFKATILGSRDQ 196
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGV 174
LCV+ ++ +++ CRK T C++ N ++A ++ V +
Sbjct: 197 LCVHPKISKFRG-NALIKNCRKITKEG------------KCKYHNNLKQANTSGV-AADI 242
Query: 175 YTLQDLR--AFGKQQGW-CPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVV 231
++DL+ A G+ CP++ R + NVV+ Y YLLD + ++ +V+
Sbjct: 243 QDIEDLKNIASSSDSGYFCPFYATREIESVCNVVLLPYNYLLDSITRQNLKIDLN-NTVL 301
Query: 232 VFDEAHNIDNVCIEALSVSVR 252
+ DEAHN+++V EA S +R
Sbjct: 302 ILDEAHNVESVSEEAYSFDLR 322
>gi|403369956|gb|EJY84835.1| Isoform 4 of Regulator of telomere elongation helicase 1 [Oxytricha
trifallax]
Length = 1415
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 136/289 (47%), Gaps = 42/289 (14%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
F+ + TVYFP+ Y Q +M ++ + L+ + LLE PTGTGKT++LL +++
Sbjct: 280 FQTDGHTVYFPF-KPYSCQVDFMSKVIKGLNQNENALLESPTGTGKTLSLLCASLAWLKL 338
Query: 63 KPE-------NPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNL 115
+ E + ++IY +RT ++ + EL+ A ++ L SR +L
Sbjct: 339 QREKVGIQSGDVPRIIYTSRTHSQLAQVQKELR----------NTAYNPRSVILGSRDHL 388
Query: 116 CVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVY 175
CV+ + ++++ AC+K + I+ C F +N + A + P Y
Sbjct: 389 CVHPEIKLLRG-NALNLACQKAQKA-----------IDPCIFGKNRDIALTKLSWEP--Y 434
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
+++L + +CPYF ++ +Q A+V+ Y YL+D K+ K S+++FDE
Sbjct: 435 DIEELHEIATKMIFCPYFASKDRMQGADVIFMPYNYLIDDKIRENFDINY-KGSIIIFDE 493
Query: 236 AHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
AHN + + S + + LE + E E K D RLR +
Sbjct: 494 AHNASSTAEDVASFELNTKLLEQS---------EFELQKLQDERRLRGD 533
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 98/200 (49%), Gaps = 7/200 (3%)
Query: 433 LQLSCHDASLAVKPVFDRF-QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
L C +A + + + + +S+++TSGTLSP++ + L ++ + +
Sbjct: 726 LSFWCFNAGIGFREIQELLPRSIILTSGTLSPLNSFQAELQIQFNQRLENPHVISPEQVS 785
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
+LT+G + + F+ R + + G + + + P G++ FF SY M
Sbjct: 786 INILTKGVRESLFNFSFNNRDNENTMVDLGMSIASIAQVTPGGMLVFFPSYRVMQRCEEV 845
Query: 552 WNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKA------CDCGRGAVFFSVARGKVA 605
WN+ + + I +HK +++E +D + +D Y K+ D GA+ V RG+++
Sbjct: 846 WNNQKVRQHIEKHKKLYMEPKDPSQYQTTMDLYYKSIFSPKPTDKTNGAILMGVCRGRIS 905
Query: 606 EGIDFDRHYGRLVIMFGVPF 625
EG+DF + R VI+ G+P+
Sbjct: 906 EGLDFSDNAARCVIVVGIPY 925
>gi|67623207|ref|XP_667886.1| helicase [Cryptosporidium hominis TU502]
gi|54659060|gb|EAL37657.1| helicase, belonging to UvrD family [Cryptosporidium hominis]
Length = 1100
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 45/235 (19%)
Query: 433 LQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
L C A+ A+ + +S++ITSGTLSP+D + + V +F + L D +
Sbjct: 525 LSFWCFSAAAALSSLVSAGVRSMIITSGTLSPLDTLAQQFSSSNV---TFDVFLENDHVI 581
Query: 492 -------PMVLTRG--SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSY 542
L RG ++ + ++ R++P + G ++ + V +PDGI+ FF SY
Sbjct: 582 DSESQLWAATLERGNSANNTHLIGSYEARNNPSYFSSLGSVVFDCVKRIPDGILLFFGSY 641
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY----RKACD--------- 589
S MD+ + W D G+++ I K VFIE ++ E LD+Y +K D
Sbjct: 642 SLMDQAVKHWTDQGLIERIKAFKSVFIEPRNSFELGSVLDSYMDCIKKGADSSSQNDGYF 701
Query: 590 -------------------CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
G++ +V RGKV+EGI+F + R VI+ G+PF
Sbjct: 702 KDKKAKSGLSDFVLKSKRISSSGSLLIAVCRGKVSEGINFSDNACRGVIIAGLPF 756
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 132/321 (41%), Gaps = 89/321 (27%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLS---------L 55
+E +V FPYD Y Q +YM ++ +L K H LLE PTGTGKT+ LL+ L
Sbjct: 10 IEGYSVPFPYD-AYKCQINYMQKILYSLKYKKHALLESPTGTGKTLCLLASTLAFQKHFL 68
Query: 56 ITSYVLSKP-ENPV-----------------------------------KLIYCTRTVHE 79
I+ L KP EN ++IY +RT +
Sbjct: 69 ISHGSLKKPIENTSSAGVIKSEGGSIELMGVPRTVLENSKETKMDMLIPRIIYSSRTHSQ 128
Query: 80 MEKTLAELKL-----------------------LHNYQTRHLGPAAKIL--AIGLSSRKN 114
+ + + ELK + R + K L A L SR
Sbjct: 129 LSQVMRELKSSGISDGFTIELFDTDAENKAKIEKSTSKKRPVIKGGKKLFKATILGSRDQ 188
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGV 174
LCV+ ++ +++ CRK T C++ N ++A ++ V +
Sbjct: 189 LCVHPKISKFRG-NALIKNCRKITKEG------------KCKYHNNLKQANTSGV-AADI 234
Query: 175 YTLQDLR--AFGKQQGW-CPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVV 231
++DL+ A G+ CP++ R + NVV+ Y YLLD + ++ +V+
Sbjct: 235 QDIEDLKNIASSSDSGYFCPFYATREIESVCNVVLLPYNYLLDSITRQNLKIDLNN-TVL 293
Query: 232 VFDEAHNIDNVCIEALSVSVR 252
+ DEAHN+++V EA S +R
Sbjct: 294 ILDEAHNVESVSEEAYSFDLR 314
>gi|326430720|gb|EGD76290.1| hypothetical protein PTSG_00993 [Salpingoeca sp. ATCC 50818]
Length = 871
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 9/203 (4%)
Query: 430 DPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS----- 484
D LQ + ++ + V + ++V + GT+ + + + + +R+ K+S
Sbjct: 565 DASLQFMLLNPAIYFEEVLLKARAVAVVGGTMGSMSEF--VQHLQTPKTRALKVSTFSCG 622
Query: 485 --LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSY 542
+ + I + T G P F R + + G+LLV + +VP G+V FF SY
Sbjct: 623 HVVNGNNIIALAATHGPTNEPFRFTFANRKNKAMVEGLGRLLVNVCRVVPAGVVVFFPSY 682
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARG 602
D I W G+L + + K V E + +T L Y A GRG + F+V G
Sbjct: 683 DTEDFIYQHWKACGVLDSLQRLKQVVREPRAAGKTDECLTEYSNAVQQGRGGLLFAVVGG 742
Query: 603 KVAEGIDFDRHYGRLVIMFGVPF 625
K++EGI+F GR V+M G+P+
Sbjct: 743 KLSEGINFKDDLGRCVVMVGLPY 765
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 99/214 (46%), Gaps = 15/214 (7%)
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
+P K+ +C+RT ++ + ++E+K P + + L SR+NLC N RV
Sbjct: 233 EPPRIRKIFFCSRTHSQLAQFVSEVKN---------SPFSDVRLTALGSRQNLCTNPRVN 283
Query: 123 AAENRDSVDAACR--KRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
+ +++ C ++T + + + ++ C ++ ++ +++
Sbjct: 284 KLSSLHAINEKCLDLQKTKNEIDPKTGKAVKVKKCPMLNPRSMNVTSNIILGSPQDIEEA 343
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
G++ G C Y+ +R V+FA +V+ Y LL + ++ K+++V+ DEAHN+
Sbjct: 344 AVVGERLGACAYYASRQAVEFAELVLLPYNMLLHKPTREAVGLDL-KDNIVIVDEAHNLV 402
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
S + R LE A LS Q +++FK
Sbjct: 403 ETIAALHSAKLARLELEQAHAALS---QYMDKFK 433
>gi|145345288|ref|XP_001417148.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577375|gb|ABO95441.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 938
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 11/200 (5%)
Query: 431 PVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
P + + C S+A V ++ +SV+ITSGTLSP++ F ++ F + +
Sbjct: 517 PGMVIQCMKPSVAFHAVAEKARSVIITSGTLSPMN------TFEAELAEKFPTKIEAPHV 570
Query: 491 CP-----MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYM 545
P + +T ++ P A+ G+ L++ ++P G++ F YS +
Sbjct: 571 VPNDHVYVEVTSAIGEVTYKATDGHVQGPKFAKKLGEYLLKYAQVIPGGMLVFLPKYSLI 630
Query: 546 DEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVA 605
D ++ W+ +G+ ++ +K V +ET+ L+ + G+G++ +V RGKV+
Sbjct: 631 DRVLREWHVTGLFGKMNDYKRVVVETRGARGFQDTLNEFNLGNTNGKGSLMLAVYRGKVS 690
Query: 606 EGIDFDRHYGRLVIMFGVPF 625
EGIDF R V G+PF
Sbjct: 691 EGIDFKDDSARAVFCVGIPF 710
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 129/304 (42%), Gaps = 65/304 (21%)
Query: 10 VYFPYD-NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY-----VLSK 63
V FP N +P Q M + RAL + H ++E PTGTGKT+ALL ++ LS
Sbjct: 132 VKFPEGLNPHPAQTMTMSSIIRALTKREHAMIESPTGTGKTLALLCGALAWQEREVALSM 191
Query: 64 PEN----PVKLIY-------------CTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILA 106
+N K+ Y C+RT ++ + L ELK Y R+
Sbjct: 192 EKNKGYWSEKMKYQTARNAYKDAIFICSRTHSQINQILRELKRT-GYSPRY--------- 241
Query: 107 IGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFF-------- 158
LSSR+ +C + DA C++ + V A+ C FF
Sbjct: 242 SVLSSRQRMCPMEK---------NDAQCKELLGTGV----AQQSGRTACGFFNRHKHVSS 288
Query: 159 --ENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPK 216
E Y KA + P + ++D + C ++ R MV+ A+++ Y YL D
Sbjct: 289 NMERYPKAGEEGMF-PSAWDMEDFERVVNEIEGCSFYALREMVKTADLIFCPYNYLFDVN 347
Query: 217 VAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS----RINQE--- 269
+ + ++ K++ V+ DE HN+++VC E S+ T+ LS +IN E
Sbjct: 348 IRRKMKIDL-KDAAVIIDEGHNLEDVCREGSSIEFSLDTIGKGMDELSKTWGKINNETSL 406
Query: 270 IERF 273
I RF
Sbjct: 407 IARF 410
>gi|383856223|ref|XP_003703609.1| PREDICTED: Fanconi anemia group J protein-like [Megachile
rotundata]
Length = 935
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 135/290 (46%), Gaps = 64/290 (22%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY-------- 59
+ V FP Y Q + M ++ + +CLLE PTGTGKT+ALL + ++
Sbjct: 200 IKVKFPA-KPYSCQMAVMNKVIQGCVKSENCLLESPTGTGKTLALLCSVLAWHDHHSDVN 258
Query: 60 ------------------------VLSKPENPVK------LIYCTRTVHEMEKTLAELKL 89
L K + P K + Y TRT ++++ EL
Sbjct: 259 PIDDGDFNDCGAGVLYTCEAYDEEYLKKFDEPTKRSKIPKIYYGTRTHKQIQQVTREL-- 316
Query: 90 LHNYQTRHLGPAAKILAIGLSSRKNLCV--NSRVLAAENRDSVDAACRKRTASWVRALAA 147
R K + I LSSR++ C+ ++R D +D KR + +
Sbjct: 317 ------RKTAYKQKKMTI-LSSREHTCIQESNRNKTELCNDLLDPLKGKRCPFYNES--- 366
Query: 148 ENPNIETCEFFENYE-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
N ++ F + E + ++A + ++DL A GK++G CPYF AR++++FA+++
Sbjct: 367 ---NKKSINSFTSLEIRGVNSA------WDIEDLVAIGKEEGICPYFAARNLMEFADIIF 417
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTL 256
Y Y++DP + + ++ K+ VV+ DEAHNI+++C E SV+ R L
Sbjct: 418 CPYNYIIDPDIRESMQIDL-KDEVVILDEAHNIEDICREVASVAFREDQL 466
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 101/204 (49%), Gaps = 12/204 (5%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN--FHPVVSRSFKMSLTRDC 489
L+L C + + +P+ + +++ SGTL+P Y LN F +++ + ++
Sbjct: 631 TLKLICMNPGVIFEPLSRSVRCIILASGTLTPTASYQSELNTTFSHILNAGH--VIPKEQ 688
Query: 490 ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
+ +++G + + + + + G G +L+ + +P G++CFF SY+ M +
Sbjct: 689 VYATCISKGPNGIQLRANYQTVNSWGFQDELGLVLLRICESIPHGVLCFFSSYNVMYKQT 748
Query: 550 ATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK------ACDCGR--GAVFFSVAR 601
W + EI + K VF+E + E ++ YR+ A G+ G +F +V R
Sbjct: 749 ERWKHTSTWNEISRIKRVFVEPRHGSELEFIMNEYREVIENTSAGPIGKINGGLFLAVYR 808
Query: 602 GKVAEGIDFDRHYGRLVIMFGVPF 625
GKVAEGIDF + R V+ G+PF
Sbjct: 809 GKVAEGIDFKDNEARCVVCVGIPF 832
>gi|32398845|emb|CAD98555.1| similar to helicase-like protein nhl, possible [Cryptosporidium
parvum]
Length = 1100
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 45/235 (19%)
Query: 433 LQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
L C A+ A+ + +S++ITSGTLSP+D + + V +F + L D +
Sbjct: 525 LSFWCFSAAAALSSLVSAGVRSMIITSGTLSPLDTLAQQFSSSNV---TFDVFLENDHVI 581
Query: 492 -------PMVLTRG--SDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSY 542
L RG ++ + ++ R++P + G ++ + V +PDGI+ FF SY
Sbjct: 582 DSESQLWAATLERGNSTNNTHLIGSYEARNNPSYFSSLGSVVFDCVKRIPDGILLFFGSY 641
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY----RKACD--------- 589
S MD+ + W D G+++ I K VFIE ++ E LD+Y +K D
Sbjct: 642 SLMDQAVKHWTDQGLIERIKAFKSVFIEPRNSFELGSVLDSYMDCIKKGADSSSQNDGYF 701
Query: 590 -------------------CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
G++ +V RGKV+EGI+F + R VI+ G+PF
Sbjct: 702 KDKKAKSGLSDFVLKSKRISSSGSLLIAVCRGKVSEGINFSDNACRGVIIAGLPF 756
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 133/321 (41%), Gaps = 89/321 (27%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLS---------L 55
+E +V FPYD Y Q +YM ++ +L K H LLE PTGTGKT+ LL+ L
Sbjct: 10 IEGYSVPFPYD-AYKCQINYMQKILYSLKYKKHALLESPTGTGKTLCLLASTLAFQKHFL 68
Query: 56 ITSYVLSKP-ENPV-----------------------------------KLIYCTRTVHE 79
I+ L KP EN ++IY +RT +
Sbjct: 69 ISHGSLKKPIENTSSAGVIKSEGGSIELMGVPRTVLENNKETKMDMLIPRIIYSSRTHSQ 128
Query: 80 MEKTLAELKL-----------------------LHNYQTRHLGPAAKIL--AIGLSSRKN 114
+ + + ELK + R + K L A L SR
Sbjct: 129 LSQVMRELKSSGISDGFTIELFDTDAENKAKIEKSTSKKRPVIKGGKKLFKATILGSRDQ 188
Query: 115 LCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGV 174
LCV+ ++ + +++ CRK T C++ N ++A ++ V +
Sbjct: 189 LCVHPKI-SKFRGNALIKNCRKITKEG------------KCKYHNNLKQANTSGV-AADI 234
Query: 175 YTLQDLR--AFGKQQGW-CPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVV 231
++DL+ A G+ CP++ R + NVV+ Y YLLD + ++ +V+
Sbjct: 235 QDIEDLKNIASSSDSGYFCPFYATREIESVCNVVLLPYNYLLDSITRQNLKIDLN-NTVL 293
Query: 232 VFDEAHNIDNVCIEALSVSVR 252
+ DEAHN+++V EA S +R
Sbjct: 294 ILDEAHNVESVSEEAYSFDLR 314
>gi|432091451|gb|ELK24533.1| Putative ATP-dependent RNA helicase DDX11-like protein 8 [Myotis
davidii]
Length = 872
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 488 DCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDE 547
D I P+VL G + + R P + G++L + ++VP G++CFF SY Y +
Sbjct: 622 DNILPLVLCSGPSNQQLEFTYLKRELPQMMDETGRILCNLCNVVPGGVICFFPSYEYQRQ 681
Query: 548 IIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCG-------RGAVFFSVA 600
+ A W+ SG+L + K +F E + + L Y + C GA+ SV
Sbjct: 682 VHAHWDKSGLLARLAVRKKIFQEPKRANQVEQVLTEYSRCIQCHGQAGGMVNGALLLSVV 741
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPF 625
GK++EGI+F GR V+M G+P+
Sbjct: 742 GGKMSEGINFSDDLGRCVVMVGLPY 766
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G +++++G SR+NLC+N V +
Sbjct: 192 TKIYYCSRTHSQL------AQFVHEVQKSPFGKDTRLVSLG--SRQNLCINQEVKNLGSV 243
Query: 128 DSVDAAC----RKRTASWVRALAAENPNIE-----TCEFFENYEKAASAAVLPPGVYTLQ 178
++ C R R S RA E C F+ + + V ++
Sbjct: 244 QLINDRCMELQRSRHESKSRAEDQEPKRKRQAPQAACPFYSHRHLQLLQDQVLLEVKDIE 303
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ G CPY+ +R + A VVV YQ LL +Q + VV+ DEAHN
Sbjct: 304 QLVALGKEAGACPYYGSRFAIPAAQVVVLPYQMLLHTATRQATGIRLQGQ-VVIIDEAHN 362
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + S V L A S++ Q +ER++ RL+A+
Sbjct: 363 LIDTITGIHSTEVSGSQLCQAH---SQLLQYMERYRK----RLKAK 401
>gi|380016559|ref|XP_003692248.1| PREDICTED: probable ATP-dependent RNA helicase DDX11-like [Apis
florea]
Length = 856
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 116/593 (19%), Positives = 252/593 (42%), Gaps = 66/593 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK-ILAIGLSSRKNLCVNSRVLAAEN 126
K+ +C+RT ++ + + ELK P +K I + L+SR+N CVN V ++
Sbjct: 190 TKIFFCSRTHSQLSQFIEELKK---------SPYSKNISVVTLTSRQNYCVNKNVKKLKH 240
Query: 127 RDSVDAAC-----RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLR 181
+ ++ C +K T + L I C F + +L + ++++
Sbjct: 241 LNLINECCLQLQRKKTTVKDEKDLKRRKIAI-NCPFIPGNQDLLLGEILIQ-IQDIEEIV 298
Query: 182 AFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
G+ C Y+ +R + ++ +++ Y +L + + K +V++ DEAHN+
Sbjct: 299 QKGESLKTCTYYASRKAIPYSQLILVPYNSILHKNTRISLGINL-KGNVLIIDEAHNL-- 355
Query: 242 VCIEALSVSVRRQTLEGATRNL----SRINQEIERFKATDAGRLRAEYNRLVEGLALRGN 297
+EA+ + ++ RNL S++ Q +RF+ + + ++L LR
Sbjct: 356 --LEAIE---KMHSVVITGRNLLHCYSQLCQYQKRFQNLFSAKNVLSLSQL--NFCLRKL 408
Query: 298 LPIADAWLSNPALPSDILKEAVPGNIRRAEHFL---------HVLR-----RLVQYLRGR 343
L + A + + P D + + + + E + +L+ +L L+G
Sbjct: 409 LTVLGA--TTKSNPDDFIDVKISPKLYKIEEIMTEIDTVNIFELLKFIKNSQLCHKLQGF 466
Query: 344 LETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLT-LEITDTDEFLHIQTICD 402
+E + + + T GI Q + + S ++T +E + I I +
Sbjct: 467 IE----QYDTNLKIHDYNTKTCGIKQFLNSIKTKDIESDVITNIESNEEQSNNPIIAIVN 522
Query: 403 FATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLS 462
F + + I + P P + +++ + ++ + ++V++ GT++
Sbjct: 523 FLECLQNCSSDGRISVIP----GPTVGQSIMKFLLLNPAIHFHDIVRDARAVILAGGTMA 578
Query: 463 PIDLYPRLLNFHPVVSRSFKMSLTRDCICP------MVLTRGSDQLPVSTKFDMRSDPGV 516
P++ + L + ++ + D + P ++T G + F R + +
Sbjct: 579 PMNEFIEQLFIAAGAAPERIITFSCDHVIPEENIICNIITHGPTGIEFEFNFQNRENTKL 638
Query: 517 ARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVE 576
G+ L+ + +I+P GIV F SY++ + + SGI+ ++ K + E + +
Sbjct: 639 LDELGRTLLNLSNIIPAGIVVFLPSYNFEELVYKHLEKSGIIAKLSLKKHILREPKLASQ 698
Query: 577 TTLALDNY----RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L+ Y ++ + G++ FSV GK++EG++F GR +I+ G+P+
Sbjct: 699 VNKILEQYSFYIKQPQNSQNGSLLFSVVGGKLSEGLNFSDDLGRCIIVVGMPY 751
>gi|401825484|ref|XP_003886837.1| RAD3-like DNA-binding helicase [Encephalitozoon hellem ATCC 50504]
gi|392997993|gb|AFM97856.1| RAD3-like DNA-binding helicase [Encephalitozoon hellem ATCC 50504]
Length = 678
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 132/276 (47%), Gaps = 51/276 (18%)
Query: 4 KLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV--L 61
K+ V + P++ YP Q M +L L L+E PTGTGK++++L + Y L
Sbjct: 5 KISGVPIDMPFEP-YPAQIVTMTKLISCLMTGTSGLVESPTGTGKSLSILCAVLGYNEHL 63
Query: 62 SK--------------------PENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
K E +K+I C+RT ++++ + +L+ Q R P
Sbjct: 64 KKGIGGCSAKRREGGGQKGEEAKEEKLKIIICSRTHKQLDQLIDQLR---KTQYR---PR 117
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
ILA SR C++ ++ ++++ C + S +C +F
Sbjct: 118 ISILA----SRSQYCISPKLGDVADKNT---GCNELVKSG------------SCAYFTGK 158
Query: 162 EKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
++ A + ++ +++L+ G++ G CPY+ +R + + A V+ Y YL+DP++ G
Sbjct: 159 DRLAKR--VGDRIFDIEELKGEGRRCGGCPYYASRILNEDAEVIFAPYNYLIDPRIRGNT 216
Query: 222 SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLE 257
++ SVV+ DEAHNI++VC + S+ + +T+E
Sbjct: 217 GISLE-NSVVIVDEAHNIEDVCRSSGSIELGSRTIE 251
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 18/194 (9%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF---HPVVSRSFKMSLTRDCICPMVL 495
DA + + +SVV+ SGTL+P + L H +V+ +T+ + +
Sbjct: 399 DAGYTFRSFVGKVRSVVLLSGTLTPFSSFSSELGHEFAHSIVAPHL---ITQKQVFVSCI 455
Query: 496 TRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD--GIVCFFVSYSYMDEIIATWN 553
+G ++ + + P +++V++ + + G + F SYS+++ +
Sbjct: 456 KKGHLARELTGTYGVSDTPQYLDQLLRIIVDVSNKIKGHGGTLVFVPSYSFLENLQKRMG 515
Query: 554 D--SGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFD 611
SGIL E ++ E + Y+ + A+F V RGK +EGIDF
Sbjct: 516 GGASGILIEP--------KSGAGNEFEKVMKRYKNRIATKQSAIFMCVYRGKASEGIDFK 567
Query: 612 RHYGRLVIMFGVPF 625
+ R VI G+P+
Sbjct: 568 DSFARAVIAVGIPY 581
>gi|390367138|ref|XP_792082.3| PREDICTED: probable ATP-dependent RNA helicase DDX11-like
[Strongylocentrotus purpuratus]
Length = 792
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 95/194 (48%), Gaps = 15/194 (7%)
Query: 447 VFDRFQSVVITSGTLSPIDLYPRLL----NFHP--VVSRSFKMSLTRDCICPMVLTRGSD 500
V +++++ GT+ P++ + L P ++ S + + + P+ L++G
Sbjct: 492 VVKEARAIIVAGGTMQPVEDFKHQLFVCTGVQPERILEFSCGHVIPPEHLLPISLSKGPT 551
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
L + + R P + G++LV + +IVP G+VCFF SY Y +I W G+L
Sbjct: 552 GLELDFTYQHRDLPQMMDEVGRILVNISNIVPGGVVCFFPSYDYEKQIYQYWESHGVLTR 611
Query: 561 IMQHKLVFIETQDVVETTLALDNY----RKACD-CG----RGAVFFSVARGKVAEGIDFD 611
+ K ++ E + + L Y KAC C GA+ F V GK++EGI+F
Sbjct: 612 LGHRKKIYREPRKANQVDQVLGQYSATIEKACSGCTLSGLNGAMLFCVVGGKMSEGINFS 671
Query: 612 RHYGRLVIMFGVPF 625
+ GR ++M G+P+
Sbjct: 672 DNLGRCIVMVGLPY 685
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 44/230 (19%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q K++ +G SR+NLC+N V +
Sbjct: 99 TKIFYCSRTHSQLSQ------FVHEVQKSPYHDDVKVVTLG--SRQNLCINEAVKKLRSM 150
Query: 128 DSVDAAC----------------------RKRTASWVRALAAENPNIETCEFFENYEKAA 165
++ C RKR+ ++A C F + +
Sbjct: 151 TLINDRCLEMQSKKKPAAKKDDDSTTKPKRKRSKQSLKA----------CPHFSQGQLSL 200
Query: 166 SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM 225
+ V ++ L GK+ CPY+ R+ V A +VV Y LL +
Sbjct: 201 YKDRVAVEVMDMEQLGKVGKELKACPYYGTRYAVPNAQLVVLPYNILLHKSTRKACRINL 260
Query: 226 QKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKA 275
K ++V+ DEAHN+ SV V L R S+++Q +++FK+
Sbjct: 261 -KGNIVIIDEAHNLIETICNVHSVEVTGAQL---CRAHSQLSQYMQKFKS 306
>gi|29612643|gb|AAH49929.1| Ddx11 protein, partial [Mus musculus]
Length = 443
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLLNFHPV-----VSRSFKMSLTRDCICPMVLTRGSD 500
V ++VVI GT+ P+ D +LL V V S + D I P+++ G
Sbjct: 144 VVKECRAVVIAGGTMQPMSDFREQLLACSGVEAGRVVEFSCGHVIPPDNILPLIICSGPS 203
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCF SY Y+ ++ A W+ +G+L
Sbjct: 204 NQQLEFTYQRRELPQMMEETGRILCNLCNVVPGGVVCFLPSYEYLRQVHAHWDKTGLLTR 263
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKAC-DCGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y K C GA+ SV GK++EGI+F
Sbjct: 264 LSVRKKIFQEPKRASQVEQVLMAYSKCIMSCSHSEGHLTGALLLSVVGGKMSEGINFSDD 323
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 324 LGRCVVMVGMPY 335
>gi|307108093|gb|EFN56334.1| hypothetical protein CHLNCDRAFT_144794 [Chlorella variabilis]
Length = 1763
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 105/213 (49%), Gaps = 24/213 (11%)
Query: 431 PVLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYP---------RLLNFHPVVSRS 480
P L C L+++ + D + +S+++TSGTLSP+D + RL N H V+++
Sbjct: 763 PTLSYWCFSPGLSMQQLTDMKVRSILLTSGTLSPLDSFAHELGLPFPIRLENPH-VIAKE 821
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ V+ G +++ + R + + G+ LV I+PDG++ FF
Sbjct: 822 QASGVWVG-----VVPTGPSGHALNSSYQNRENAAYRSDLGQALVNFCRIIPDGLLVFFT 876
Query: 541 SYSYMDEIIATWN---DSG---ILKEIMQHKLVFIETQDVVETTLALDNYRKAC--DCGR 592
SY+ + +ATW SG I + I + K IE ++ A ++R
Sbjct: 877 SYAQLQSCVATWKQVPSSGGPSIWERIAKSKQPVIEPRESAAFNAAALDFRAKLLNPAYN 936
Query: 593 GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA FF+V RGK++EG+DF GR V++ G+P+
Sbjct: 937 GAAFFAVTRGKLSEGLDFSDAAGRAVVLTGIPY 969
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 130/309 (42%), Gaps = 81/309 (26%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--VLSKPE 65
V V FP++ YP Q YM ++ +AL H LLE PTGTGKT+ LL ++ L+
Sbjct: 284 VEVEFPFE-AYPCQLDYMTKVIQALQEGQHALLESPTGTGKTLCLLCATLAWRQSLTTQA 342
Query: 66 NPV----------------------------------------------KLIYCTRTVHE 79
P +++Y +RT +
Sbjct: 343 RPASHPAAAAVGEVQANQHSSTLVQGLREAWAEHRATKMAEGGPGSGLPQIVYSSRTHSQ 402
Query: 80 MEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACR---- 135
+++ + ELK +Y+ R ++SR++ C++ V + + + ACR
Sbjct: 403 LQQVMRELKSC-SYKPR---------TATVASRQHGCLHPVV--STMQAGANQACRALVS 450
Query: 136 KRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLA 195
KR W + E F A+A VL ++DL G+ + CPY+LA
Sbjct: 451 KRACKWYNGV----------EKFVRQNPDANAEVL-----DIEDLGRIGESRTVCPYYLA 495
Query: 196 RHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQT 255
R M A++V Y YLLD K + Q +V++FDEAHN++ VC +++S +
Sbjct: 496 REMAATADIVFMPYNYLLDAKTRTGLGIAWQS-AVLIFDEAHNVEQVCSDSMSFDLPAAA 554
Query: 256 LEGATRNLS 264
L A L
Sbjct: 555 LASAIEELG 563
>gi|412986103|emb|CCO17303.1| predicted protein [Bathycoccus prasinos]
Length = 1048
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 143/667 (21%), Positives = 276/667 (41%), Gaps = 142/667 (21%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV----LA 123
++I+C+RT ++ + ++ELK +TR + + ++SRK LCVN +V ++
Sbjct: 286 TRIIFCSRTHSQLSQCVSELK-----RTRF---RESVSSAAIASRKQLCVNPKVNNGLMS 337
Query: 124 AENRDSVDAACRKRTASWVRALAAENPNIET---------CEFFENYEKA----ASAAVL 170
A+ + RK +AS + + + C + + KA A A++
Sbjct: 338 AQRINETCLDLRKSSASTSASTTKDKEKKKKKKGEKKEKGCPYLVSRSKAMRALADRALV 397
Query: 171 PPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ-KES 229
P +++L + + C Y+ AR + A+++ Y LL P + E+ K +
Sbjct: 398 QP--LDIEELSSMATKTKSCAYYAARQASKNADIIFMPYASLLAPDTRDALGIELDPKNT 455
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
VV+FDEAHN+ + + S S+ R+ + R +S I I+RFK RL A+ R++
Sbjct: 456 VVIFDEAHNVADAVRSSSSASMTRRDV---NRAISMIENYIDRFKE----RLTADNLRVL 508
Query: 290 EGLALRGNLPIADAWLSNPALPS-DILKEAVPGNIRRAEHFLHVLR-------RLVQYLR 341
+ L L +A +S + S + K+ + FL + LV++L+
Sbjct: 509 KVL-----LSVAKRLVSVLTMSSTEKEKKTNRKKLSSLNDFLFSAKLDDVNVFELVRFLK 563
Query: 342 GRLETENVEK-EGPVSFVASITAHA-------GIDQKTLRFCYERLHSLM--LTLEITDT 391
+T+ +K G +V I + G D + +E +++ + +E DT
Sbjct: 564 ---QTKIAQKIAGYGEYVEQIKENGVDAYGTIGSDDRDWSGAWEGAKTVITDVRMETLDT 620
Query: 392 DEFLH-----------------IQTICDFATLVGTYTRGFSIIIEPF---DERMPHIPDP 431
D L + I +F +G+ +++E +E +
Sbjct: 621 DAGLEARVVTTKKNQHSANVASVHAIANFIHALGSEDADGRVLVEKMYGTEEEESSVKFV 680
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLNFHP--VVSR--------- 479
+L + AS + + + ++ ++ GTL+P +L +L+ + ++S
Sbjct: 681 LLDV----ASRFREDIVKKCRATLLVGGTLAPFEELLTQLVGYKESGILSSNDADITSSS 736
Query: 480 -------------SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS------DPGVARNY 520
S + + + P+ + +G P FD S + + +
Sbjct: 737 SPLSPLSPKPMLFSCDHVVDKSNVLPLAIAKG----PSGKTFDFTSKNLKLCENDLLDDL 792
Query: 521 GKLLVEM--VSIVPDGIVCFFVSYSYMDEIIATWN---------DSGILKEIMQH--KLV 567
G+ ++ + V + G++ FF S+S MD W D+ + ++M+ K V
Sbjct: 793 GRCVLNLSKVCVKTGGVIVFFPSFSLMDRCFQRWQSNSNNANTADASSMLQMMRKVGKTV 852
Query: 568 FIETQDVVETTLALDNYRKACD---------CGRGAVFFSVARGKVAEGIDFDRHYGRLV 618
E +D + L + AC GA+ V GK++EGI+F + GR+V
Sbjct: 853 LKEPRDNAQLERTLFQFSSACGGENPTYELASKTGAILLCVVNGKLSEGINFKDNLGRMV 912
Query: 619 IMFGVPF 625
I+ G+PF
Sbjct: 913 IVVGLPF 919
>gi|392350937|ref|XP_237570.6| PREDICTED: probable ATP-dependent RNA helicase DDX11, partial
[Rattus norvegicus]
Length = 954
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLLNFHPV-VSRSFKMS----LTRDCICPMVLTRGSD 500
V +++VI GT+ P+ D +LL V SR + S + D I P+++ G
Sbjct: 448 VVKECRALVIAGGTMQPVSDFREQLLACSGVEASRVVEFSCGHVIPPDNILPLIICSGPS 507
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCF SY Y+ ++ A W+ +G+L
Sbjct: 508 NQQLEFTYQRRELPQMMEETGRILCNLCNVVPGGMVCFLPSYEYLRQVHAHWDKTGLLAR 567
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKA-CDCGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y C GA+ SV GK++EGI+F
Sbjct: 568 LSVRKKIFQEPKRASQVEQVLTAYSTCIASCSHSEGHLTGALLLSVVGGKMSEGINFSDD 627
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 628 LGRCVVMVGMPY 639
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 26/226 (11%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + + E+ Q G +++++G SR++LCVN V + +
Sbjct: 66 TKIYYCSRTHSQLAQFVREV------QKSPFGKETRLVSLG--SRQSLCVNEDVKSLGSV 117
Query: 128 DSVDAAC---RKRTASWVRALAAENPNIE------TCEFFENYEKAASAAVLPPGVYTLQ 178
++ C ++R +R + + P +C F+ + + + V ++
Sbjct: 118 HLMNDRCVDMQRRKHEKMR-IGEDKPKRRRQKMQASCPFYNHEQMELLRDEILLEVKDME 176
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L A GK+ CPY+ +R + A +VV Y LL +Q + VV+ DEAHN
Sbjct: 177 QLVALGKEAQACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRLQGQ-VVIIDEAHN 235
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ + S V L A S++ Q +ER++ RL+A+
Sbjct: 236 LIDTITNIHSTEVNGSQLCQAH---SQLLQYMERYRK----RLKAK 274
>gi|357455003|ref|XP_003597782.1| Regulator of telomere elongation helicase [Medicago truncatula]
gi|355486830|gb|AES68033.1| Regulator of telomere elongation helicase [Medicago truncatula]
Length = 1089
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
L C + +A++ D +S+++TSGTLSP+D + L + + + I
Sbjct: 457 TLSWWCFNPGIALEEFAKDGVRSIILTSGTLSPLDSFAEELKLDFPIRLENPHVIGPNQI 516
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
V+ G ++ + R + G +V + IVPDG++ FF SY +++ I
Sbjct: 517 WAGVVPVGPLGRTFNSSYRTRDTMEYKQELGNAIVNLTRIVPDGLLVFFPSYYLLEQSIG 576
Query: 551 TW----ND-SGILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGK 603
W ND S I + I ++K IE ++ T ++ +Y + GAVFF+V RGK
Sbjct: 577 CWKSLSNDGSSIWERICKNKKPVIEPRESSMFTSSIKDYLTKLNDTTASGAVFFAVCRGK 636
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
V+EG+DF H GR V++ G+P+
Sbjct: 637 VSEGLDFADHAGRAVVVTGLPY 658
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 124/281 (44%), Gaps = 62/281 (22%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--- 59
+K+ + V FPY+ Y Q YM ++ ++L + + LLE PTGTGKT+ LL ++
Sbjct: 45 YKIRGIDVDFPYE-AYDSQLVYMDKVMQSLQEESNALLESPTGTGKTLCLLCATLAWRKS 103
Query: 60 -------------------VLSKPENP-----VKLIYCTRTVHEMEKTLAELKLLHNYQT 95
V S P ++Y +RT ++ + + ELK +Y+
Sbjct: 104 LGSFSTGMSIKTGDNGKTEVSSSQSEPGASKFPTIVYASRTHSQIRQVIQELKRT-SYR- 161
Query: 96 RHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDA---ACRKRTASWVRALAAENPNI 152
P +L SR+ C++ V R +A ACR+R R
Sbjct: 162 ----PKMTVLG----SREQFCIHDEVKLLRGRTQTNACRFACRRRAKQKRR--------- 204
Query: 153 ETCEFFE---NYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
C F +Y K P ++DL GK G CPY LA+ + + +++ Y
Sbjct: 205 --CNHFNQVLDYLKQNPNLGEEP--VDIEDLVNIGKTSGPCPYHLAKELHKAVDIIFAPY 260
Query: 210 QYLLD--PKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
YL+D + A IS S+++FDEAHN++++C +A S
Sbjct: 261 NYLIDRGKRKALQIS---WSNSILIFDEAHNLESICADAAS 298
>gi|357454989|ref|XP_003597775.1| Regulator of telomere elongation helicase [Medicago truncatula]
gi|355486823|gb|AES68026.1| Regulator of telomere elongation helicase [Medicago truncatula]
Length = 1048
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
L C + +A++ D +S+++TSGTLSP+D + L + + + I
Sbjct: 416 TLSWWCFNPGIALEEFAKDGVRSIILTSGTLSPLDSFAEELKLDFPIRLENPHVIGPNQI 475
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
V+ G ++ + R + G +V + IVPDG++ FF SY +++ I
Sbjct: 476 WAGVVPVGPLGRTFNSSYRTRDTMEYKQELGNAIVNLTRIVPDGLLVFFPSYYLLEQSIG 535
Query: 551 TW----ND-SGILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGK 603
W ND S I + I ++K IE ++ T ++ +Y + GAVFF+V RGK
Sbjct: 536 CWKSLSNDGSSIWERICKNKKPVIEPRESSMFTSSIKDYLTKLNDTTASGAVFFAVCRGK 595
Query: 604 VAEGIDFDRHYGRLVIMFGVPF 625
V+EG+DF H GR V++ G+P+
Sbjct: 596 VSEGLDFADHAGRAVVVTGLPY 617
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 124/281 (44%), Gaps = 62/281 (22%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--- 59
+K+ + V FPY+ Y Q YM ++ ++L + + LLE PTGTGKT+ LL ++
Sbjct: 4 YKIRGIDVDFPYE-AYDSQLVYMDKVMQSLQEESNALLESPTGTGKTLCLLCATLAWRKS 62
Query: 60 -------------------VLSKPENP-----VKLIYCTRTVHEMEKTLAELKLLHNYQT 95
V S P ++Y +RT ++ + + ELK +Y+
Sbjct: 63 LGSFSTGMSIKTGDNGKTEVSSSQSEPGASKFPTIVYASRTHSQIRQVIQELKRT-SYR- 120
Query: 96 RHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDA---ACRKRTASWVRALAAENPNI 152
P +L SR+ C++ V R +A ACR+R R
Sbjct: 121 ----PKMTVLG----SREQFCIHDEVKLLRGRTQTNACRFACRRRAKQKRR--------- 163
Query: 153 ETCEFFE---NYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSY 209
C F +Y K P ++DL GK G CPY LA+ + + +++ Y
Sbjct: 164 --CNHFNQVLDYLKQNPNLGEEP--VDIEDLVNIGKTSGPCPYHLAKELHKAVDIIFAPY 219
Query: 210 QYLLD--PKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
YL+D + A IS S+++FDEAHN++++C +A S
Sbjct: 220 NYLIDRGKRKALQIS---WSNSILIFDEAHNLESICADAAS 257
>gi|293350107|ref|XP_001070646.2| PREDICTED: probable ATP-dependent RNA helicase DDX11 [Rattus
norvegicus]
Length = 845
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLLNFHPV-VSRSFKMS----LTRDCICPMVLTRGSD 500
V +++VI GT+ P+ D +LL V SR + S + D I P+++ G
Sbjct: 546 VVKECRALVIAGGTMQPVSDFREQLLACSGVEASRVVEFSCGHVIPPDNILPLIICSGPS 605
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCF SY Y+ ++ A W+ +G+L
Sbjct: 606 NQQLEFTYQRRELPQMMEETGRILCNLCNVVPGGMVCFLPSYEYLRQVHAHWDKTGLLAR 665
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKA-CDCGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y C GA+ SV GK++EGI+F
Sbjct: 666 LSVRKKIFQEPKRASQVEQVLTAYSTCIASCSHSEGHLTGALLLSVVGGKMSEGINFSDD 725
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 726 LGRCVVMVGMPY 737
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 102/224 (45%), Gaps = 26/224 (11%)
Query: 70 LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDS 129
+ YC+RT ++ + + E+ Q G +++++G SR++LCVN V + +
Sbjct: 160 IYYCSRTHSQLAQFVREV------QKSPFGKETRLVSLG--SRQSLCVNEDVKSLGSVHL 211
Query: 130 VDAAC---RKRTASWVRALAAENPNIE------TCEFFENYEKAASAAVLPPGVYTLQDL 180
++ C ++R +R + + P +C F+ + + + V ++ L
Sbjct: 212 MNDRCVDMQRRKHKKMR-IGEDKPKRRRQKMQASCPFYNHEQMELLRDEILLEVKDMEQL 270
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
A GK+ CPY+ +R + A +VV Y LL +Q + VV+ DEAHN+
Sbjct: 271 VALGKEAQACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRLQGQ-VVIIDEAHNLI 329
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
+ S V L A S++ Q +ER++ RL+A+
Sbjct: 330 DTITNIHSTEVNGSQLCQAH---SQLLQYMERYRK----RLKAK 366
>gi|301629712|ref|XP_002943978.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Xenopus (Silurana) tropicalis]
Length = 688
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 2/174 (1%)
Query: 454 VVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSD 513
V++TSGTL P+ + + VS + + I ++ RG D +S+ +D R
Sbjct: 72 VILTSGTLCPLSSFTMEMQIPFPVSLENPHVIDKHQIWVGIVPRGPDGSQLSSSYDRRFS 131
Query: 514 PGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD 573
+ GK + + +VP G++ FF SY +D+ I W + G+ +I K +F+E +
Sbjct: 132 EEYLSSLGKTIGNIARVVPHGLLVFFPSYPVLDKSIEFWKERGLSAKIDDVKPMFVEPRG 191
Query: 574 VVETTLALDNYRKACDC--GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
T +D Y + G GA F +V RGK +EG+DF + GR VI+ G+PF
Sbjct: 192 KGSFTEVIDAYYEKIRSANGSGASFLAVCRGKASEGLDFADNNGRGVIITGLPF 245
>gi|76155593|gb|AAX26884.2| SJCHGC09335 protein [Schistosoma japonicum]
Length = 412
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 132/304 (43%), Gaps = 73/304 (24%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV---- 60
++ V + FPY Y Q YM ++ +L+ H +LE PTGTGKT+ LL +++
Sbjct: 6 IDGVEIDFPYQP-YDCQLEYMTKVLLSLNQGKHAILESPTGTGKTLCLLCASLAWLDKQI 64
Query: 61 ------------------------------------------LSKPENPVKLIYCTRTVH 78
L+K N K+I+ +RT
Sbjct: 65 RPAELISTIDTKHQSGLGNCLTCDDIGNHDDNKLFRQIHFTNLNKVNNACKIIFASRTHS 124
Query: 79 EMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACR--- 135
++ + + LK + + I +G SR LC+ + V++ ++ + ACR
Sbjct: 125 QLAQAINALK-------GTVYSKSNISVVG--SRDQLCLLTEVMSLDSNSAKIYACRMRV 175
Query: 136 KRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLA 195
KR + ++ N I A + G+ ++DL FG++ CPYF++
Sbjct: 176 KRKRVNISGISTLNAMI-------------LANLKLEGIVDIEDLSNFGQKTRCCPYFIS 222
Query: 196 RHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQT 255
R + + ++ Y YLLD ++ + + ++ + V+FDEAHNI+ VC +A SV++
Sbjct: 223 RELKTDSRLIFMPYNYLLDSRIRTLYNINLEN-TAVIFDEAHNIEQVCEDASSVTLSSAL 281
Query: 256 LEGA 259
L A
Sbjct: 282 LASA 285
>gi|357617927|gb|EHJ71072.1| putative DEAD/H [Danaus plexippus]
Length = 756
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 23/195 (11%)
Query: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTR------------DCICPMV 494
V + +SV++ GT+ PI + LL S K L R D + +
Sbjct: 465 VVSQCRSVILAGGTMEPISEFQELL-------ASDKTQLDRVNVVKCGHVVPADNVLGIC 517
Query: 495 LTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND 554
L++G +L ++ ++ RS + G++L + ++VPDG+VCF SYS+ +
Sbjct: 518 LSKGPSKLNLNFSYENRSSFELLNEIGRILRNLCNVVPDGVVCFLPSYSFEQTLYEHLKS 577
Query: 555 SGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCG----RGAVFFSVARGKVAEGIDF 610
+G+L+ + + K++F E + E L Y A GA+ SV GK++EG++F
Sbjct: 578 TGVLESVSKKKIIFREPKSASEVEQVLQKYSAAVKSKVGDINGALMLSVVGGKLSEGLNF 637
Query: 611 DRHYGRLVIMFGVPF 625
GR V++ G+P+
Sbjct: 638 SDELGRCVLVVGMPY 652
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 37/227 (16%)
Query: 69 KLIYCTRTVHEMEKTLAELK-LLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ +RT ++ + + E+K + N T+ + L+SR++ C+NS V +N
Sbjct: 75 KIYISSRTHSQLSQFIGEIKRTIFNKGTK---------VVTLASRQHYCINSEVNRLKNV 125
Query: 128 DSVDAACRKRTASWVRALAAENPN----------IETCEFFENYEKAASAAVLPPGVYTL 177
++ C + S ++ A + C ++ L V +
Sbjct: 126 SLINERCLEMQKSKTKSTAKDEEGKVVKKSKTKACSACPYYNQNNIKKLKEKLLVEVMDM 185
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+++ GKQ CPY+ +R ++ A V + S+ ++ +S ++Q ++++ DEAH
Sbjct: 186 EEIVKSGKQMKACPYYASRMALEDAEVALISHAGIVSHGARTGVSIKLQ-NNILIMDEAH 244
Query: 238 NIDNVCIEALSVSVRRQTLEG----------------ATRNLSRINQ 268
+ A S V + L ++RNL ++NQ
Sbjct: 245 GLSAALENAHSAPVSHKQLSCVKTFLEFYINKYRSLLSSRNLLQLNQ 291
>gi|393243158|gb|EJD50674.1| DNA repair helicase [Auricularia delicata TFB-10046 SS5]
Length = 801
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Query: 447 VFDRFQSVVITSGTLSPIDLYPR-LLNFHP---VVSRSFKMSLTRDCICPMVLTRGSDQL 502
+ + ++VV+ GT+SPI ++ + LL F P + S + + R+ +C +VL++
Sbjct: 511 IINEARAVVLAGGTMSPISVFEQQLLPFLPPERLASFACGHVIPRENLCALVLSKSPQGT 570
Query: 503 PVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM 562
++ ++ RSD + + G +L+ +V IVPDG+V FF SY+++ + + +SG+ +I
Sbjct: 571 SLTFNYEKRSDKTLMSDLGMVLLNLVRIVPDGMVVFFPSYAFLATVQSQLKESGLWDKIG 630
Query: 563 QHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFG 622
K +F E D L Y A G A+ +V K++EG++F R V++ G
Sbjct: 631 ARKPLFTEPNDGSSVEEVLREYGAAIASGASALLLAVVGAKLSEGLNFSDGLARAVVLVG 690
Query: 623 VPF 625
+P+
Sbjct: 691 LPY 693
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 101/256 (39%), Gaps = 53/256 (20%)
Query: 42 MPTGTGKTIALLSLITSYVLSKPENPV--KLIYCTRTVHEMEKTLAELKLLHNYQTRHLG 99
+P T L+ + ++ +PV K+ + +RT ++ + EL + + + +
Sbjct: 155 LPEDEPATSNSLAAWRARIVEDEPDPVCTKIYFASRTHTQLSQLRVELLKTPDGRMKRVV 214
Query: 100 PAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFE 159
P L+SRKNLC+N + R VD E C
Sbjct: 215 P--------LASRKNLCINDEL----KRSGVDID-------------------EGCRAML 243
Query: 160 NYEKAASAAVLPP----------------GVYTLQDLRAFGKQQGWCPYFLARHMVQFAN 203
+ +K LPP ++DL G++ CPYF +R V A
Sbjct: 244 SGDKGKRCPYLPPPDELSQMLDFRDHILASPKDIEDLVTLGQELRTCPYFGSRRAVASAQ 303
Query: 204 VVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
+V Y LL ++ K VV+ DEAHN+ + + SV++ +TL +L
Sbjct: 304 IVTLPYNLLLQKSAREATGIDL-KGHVVIIDEAHNLIDTMLSIHSVALNLKTLR---ESL 359
Query: 264 SRINQEIERFKATDAG 279
S++N +FK AG
Sbjct: 360 SQLNIYHGKFKKRLAG 375
>gi|354492614|ref|XP_003508442.1| PREDICTED: probable ATP-dependent RNA helicase DDX11-like
[Cricetulus griseus]
Length = 771
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 488 DCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDE 547
D I P+++ G + + R P + G++L + ++VP G+VCFF SY Y+ +
Sbjct: 519 DNILPLIICSGPSNQQLEFTYQRRDLPQMMEETGRVLCNLCNVVPGGVVCFFPSYEYLRQ 578
Query: 548 IIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKA--CDCGR------GAVFFSV 599
I A W+ +G+L + K +F E + + L Y K C CG+ GA+ SV
Sbjct: 579 IHAHWDKTGLLARLSVKKKLFQEPKRASQVEQVLMAYSKCIMC-CGQAGGHLTGALLLSV 637
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPF 625
GK++EGI+F GR V+M G+P+
Sbjct: 638 VAGKMSEGINFSDDLGRCVVMVGMPY 663
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 28/227 (12%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + +H Q G +++++G SR+NLCVN V + +
Sbjct: 222 TKIYYCSRTHSQLAQ------FIHEVQKSPFGKETRLVSLG--SRQNLCVNEDVKSLGSV 273
Query: 128 DSVDAAC-------RKRTASWVRALAAENPNIETCEFFENYEKAA---SAAVLPPGVYTL 177
++ C ++T + I+T F N+E+ +L V +
Sbjct: 274 QLMNDRCVDMQRSKHEKTGAGEDMPKKRRRRIQTSCPFHNHEQMQLLRDEILLE--VKDM 331
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+ L A GK+ CPY+ +R + A +VV Y LL +Q + VV+ DEAH
Sbjct: 332 EQLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRLQGQ-VVIIDEAH 390
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAE 284
N+ + S V L + S++ Q +ER+ RL+A+
Sbjct: 391 NLIDTITSIYSTEVNGSQL---CQAYSQLLQYMERY----GKRLKAK 430
>gi|313224365|emb|CBY20154.1| unnamed protein product [Oikopleura dioica]
Length = 976
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 122/286 (42%), Gaps = 56/286 (19%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENP 67
V V FPYD YP Q Y+ + AL + H +LE PTGTGKT+ LL+ + +Y NP
Sbjct: 12 VDVRFPYD-PYPAQEEYIKKCVEALVKRNHAVLESPTGTGKTLCLLASVIAYREWAKRNP 70
Query: 68 --------------VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRK 113
K+IY +RT ++ + ++EL+ L + G + +G R
Sbjct: 71 PKNKYGGSLGTESIPKIIYASRTHSQLTQVVSELRKLRDV----CGYNVDMTVVG--GRS 124
Query: 114 NLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG 173
+LCV+ V N AC A+ A +N + + G
Sbjct: 125 SLCVDLTVKKITNNSEQQNACHLLKAAQEEAKRKQNQEL----------------ISSSG 168
Query: 174 VYTLQDLRAFGKQQGWCP---------------YFLARHMVQFANVVVYSYQYLLDPKVA 218
V+ + D+ WC Y+L+R +++ Y Y+LD K+
Sbjct: 169 VHDIMDIEEL---VSWCENPPPQIPDCSTAICGYYLSRSKADTVEILLMPYNYILDKKIR 225
Query: 219 GIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
S E K +++ DEAHN++ VC E+ S + + LE ++ L+
Sbjct: 226 QRNSFEF-KNKILILDEAHNVEQVCEESSSHYISLKKLEIISKELA 270
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 37/220 (16%)
Query: 430 DPVLQLSCHDASLAVKPVFDRFQSV---VITSGTLSPIDLY--------P------RLLN 472
D +++ C +AS ++ + + V ++TSGTLSP+D Y P +L+N
Sbjct: 413 DMEIKIWCFNASYSIDDITQGAEGVYNLILTSGTLSPLDEYINSLGLDRPTQLKTIQLMN 472
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
H + S+ + + T+G++ V F R D + Y +++ +M + P
Sbjct: 473 DHVIDSKQL-------FVTTLTGTKGAEFHNV---FRNRQDKNMFEKYAEVMRDMKEVSP 522
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKL-----VFIETQDVVETTLALDNYRKA 587
G++ F +Y+ M W G+ K+ K VF+E + E +++ +
Sbjct: 523 GGMLVFHPTYALMAISKKFW---GLHKKSATFKNSFNVPVFLEPSNKKELENMTESFERE 579
Query: 588 C--DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
D GA+F V RGK++EG+DF GR+V++ G+P+
Sbjct: 580 LVNDEETGAIFNGVCRGKMSEGVDFADCRGRVVVITGIPY 619
>gi|156050655|ref|XP_001591289.1| hypothetical protein SS1G_07915 [Sclerotinia sclerotiorum 1980]
gi|206557752|sp|A7ERG1.1|CHL1_SCLS1 RecName: Full=ATP-dependent RNA helicase CHL1; AltName:
Full=Chromosome loss protein 1
gi|154692315|gb|EDN92053.1| hypothetical protein SS1G_07915 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 902
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 103/199 (51%), Gaps = 27/199 (13%)
Query: 452 QSVVITSGTLSPIDLYPRLL----NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTK 507
+++++ GT+SP Y +L H + + S + + + ++RG +P
Sbjct: 553 RAIILAGGTMSPFSDYTSILFPSIPSHKITTLSCGHVIPKTHLFASTVSRGPTGIPFKWT 612
Query: 508 FDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII----------------AT 551
F R + + G++L+ + +IVPDG+V FF SY+++ I+ AT
Sbjct: 613 FANRGNTDMMDELGRVLLNVCTIVPDGVVVFFPSYNFLSTILYRFSIPSSGTGSATATAT 672
Query: 552 WNDSG----ILKEIMQHKLVFIET-QDVVETTLALDNYRKACDCGRGAVFFSVARGKVAE 606
+ G IL+ + + K +F E+ ++ VET LA Y K+ G+GA+ FSV GK++E
Sbjct: 673 GTEKGKGKTILERLSEKKPIFQESKEESVETILAA--YAKSIAEGKGALLFSVVGGKLSE 730
Query: 607 GIDFDRHYGRLVIMFGVPF 625
GI+F GR V++ G+PF
Sbjct: 731 GINFSDALGRCVMIVGLPF 749
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 109 LSSRKNLCVNSRVLAAENRDSVDAACR--KRTASWVRALAAENPNIETCEFFENYEKAAS 166
L SRKNLC+N +V + +++ C +++++ PN + + A
Sbjct: 237 LGSRKNLCINPKVNKLNSVTAINERCAELQQSSTPKEHKCPHLPNKDNKPLVSTFRDHAL 296
Query: 167 AAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ 226
A + ++D+ A GK+ CPY+ +R ++ A +V Y LL + +
Sbjct: 297 ATI-----RDIEDMGALGKEISICPYYASRSAIKPAEIVTLPYPLLLQKSAREALGISL- 350
Query: 227 KESVVVFDEAHNI 239
K VV+ DEAHN+
Sbjct: 351 KGHVVIIDEAHNL 363
>gi|268569974|ref|XP_002640663.1| C. briggsae CBR-DOG-1 protein [Caenorhabditis briggsae]
Length = 869
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 130/581 (22%), Positives = 226/581 (38%), Gaps = 79/581 (13%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILA-IGLSSRKNLCVNSRVLAAEN 126
V++ Y TRT ++ + + E L P A I+ L+SR C+N A
Sbjct: 227 VRIYYGTRTHKQIAQVVKEFSRL---------PYANIIKHTILASRDQSCINP---TARK 274
Query: 127 RDSVDAACRKRTASWVRALAAEN---PNIETCEFFENYEKAASAAVLPPGVYTLQDLRAF 183
+ + C++ ++ +N P E ++ V + + + A
Sbjct: 275 QPDISGYCKEINSAHGIGCQFKNAMRPRFEKASMLRSHLMDQGTMVF--DMEEIVETLAL 332
Query: 184 GKQQGWCPYFLA-RHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
Q CPYF R + Q A+++ + YL+DP + S K SVV+ DEAHNI++
Sbjct: 333 AYPQ-ICPYFSTNRILTQDADLIFCPFSYLVDPLIRNS-SDVHVKNSVVILDEAHNIEDT 390
Query: 243 CIEALSVSVRRQTLEGA--TRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
C EA S + + L+ + + L R+ A D + N
Sbjct: 391 CREAASFTFTEKELDDSLLSFRLKRV--------AIDN---------------ITSNKSA 427
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
+A+ P + I + G++ EH + R V+++ T ++ +
Sbjct: 428 EEAFADVPD--ASIHMKEFKGHLMYLEHLTLEILRWVRHVAEEARTPPKSRQEGL----- 480
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICD--FATLVGTYTRGFSIII 418
KT E L S + EI D F T AT G T+ +
Sbjct: 481 ---------KTCTLSSETLFSSLTNAEI-GVDLFAPPNTPKHNAIATSFGAITKQNEPEM 530
Query: 419 EPFDERMPH-----IPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNF 473
+ D+ P + + L + + +P + +S+++ SGTL P+D L
Sbjct: 531 KEMDQFKPSATAIVVIEKWLYFQSYFGNQQYRPTYSETRSIILASGTLCPMDTLKTELGM 590
Query: 474 HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVA--RNYGKLLVEMVSIV 531
++ D I VL G ++ + SDP ++ + + V
Sbjct: 591 EFKQQVEGDQVISPDNIFAAVLPIGPHGNRITCTYRNTSDPESPFYEEVASIVKYVCTNV 650
Query: 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKAC--- 588
P GI+CF SY ++++ + + I K++ E + E + +D + +A
Sbjct: 651 PAGILCFLPSYRVLEQLKMCMYKNQSMLHIKSKKVILFEPRRSSELSAVMDEFDEAIFNP 710
Query: 589 ----DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
GA+ F+V RGKV+EGIDF R+VI G+P+
Sbjct: 711 TRFGATINGALMFAVFRGKVSEGIDFADDRARVVISVGIPY 751
>gi|149029745|gb|EDL84902.1| rCG63103 [Rattus norvegicus]
Length = 396
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 13/192 (6%)
Query: 447 VFDRFQSVVITSGTLSPI-DLYPRLLNFHPV-VSRSFKMS----LTRDCICPMVLTRGSD 500
V +++VI GT+ P+ D +LL V SR + S + D I P+++ G
Sbjct: 108 VVKECRALVIAGGTMQPVSDFREQLLACSGVEASRVVEFSCGHVIPPDNILPLIICSGPS 167
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE 560
+ + R P + G++L + ++VP G+VCF SY Y+ ++ A W+ +G+L
Sbjct: 168 NQQLEFTYQRRELPQMMEETGRILCNLCNVVPGGMVCFLPSYEYLRQVHAHWDKTGLLAR 227
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKA-CDCGR------GAVFFSVARGKVAEGIDFDRH 613
+ K +F E + + L Y C GA+ SV GK++EGI+F
Sbjct: 228 LSVRKKIFQEPKRASQVEQVLTAYSTCIASCSHSEGHLTGALLLSVVGGKMSEGINFSDD 287
Query: 614 YGRLVIMFGVPF 625
GR V+M G+P+
Sbjct: 288 LGRCVVMVGMPY 299
>gi|393212456|gb|EJC97956.1| DNA repair helicase [Fomitiporia mediterranea MF3/22]
Length = 863
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 11/182 (6%)
Query: 454 VVITSGTLSPI-----DLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKF 508
V++ GT+SPI L+P + V + + C +VL +G + K+
Sbjct: 576 VILAGGTMSPIPDVTLQLFPTIPEDRLSVFSCGHVIPHENLKC-VVLGKGPLGRDLEFKY 634
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
R D + G+ L +VSI P+GIV FF SY+++D + + W +GIL I + K VF
Sbjct: 635 KARDDQSLTDELGQCLSNLVSISPNGIVVFFPSYTFLDRVKSRWTSNGILDRIQKKKQVF 694
Query: 569 IETQDVVETTLALDNYRKAC-----DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGV 623
E + E L +Y AC +GA+ +V K++EG++F R V++ G+
Sbjct: 695 FEPHESSEVENVLRDYSIACTQVTTGPTKGALLLAVVGAKLSEGLNFADELARAVVLVGI 754
Query: 624 PF 625
P+
Sbjct: 755 PY 756
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 26/236 (11%)
Query: 64 PENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQTRHLGPAAKI-------------LAIGL 109
P + K+ + +RT ++ + + EL KL + R + ++I ++ L
Sbjct: 201 PASSTKVFFASRTHSQLSQVIHELEKLKPDGFNREIEEDSRISPRNGNGSSSPLPRSVSL 260
Query: 110 SSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAV 169
+SR +LC+N + L A D +D CR+ P + + + A+
Sbjct: 261 ASRTHLCINEK-LRARTAD-LDEGCRELLQGRQEDRCPYLPQLGEEDRLHDIRDRILAS- 317
Query: 170 LPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKES 229
P + +DL + GK+ CPYF +R V A +V Y LL + + ++ +
Sbjct: 318 -PKDI---EDLVSTGKELRLCPYFGSRSAVSSAELVTLPYNLLLHSRSRQALEIDL-TDQ 372
Query: 230 VVVFDEAHNIDNVCIE----ALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRL 281
VV+ DEAHN+ ++ LS S+ R+ ++ + SR + A RL
Sbjct: 373 VVIVDEAHNLIETLLQLHTVELSTSLLRRAIQQLAKYFSRFRTRLTTNHAVHLKRL 428
>gi|319411548|emb|CBQ73592.1| related to CHL1-protein of the DEAH box family [Sporisorium
reilianum SRZ2]
Length = 932
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 16/197 (8%)
Query: 445 KPVFDRFQSVVITSGTLSPI-DLYPRLLNFHP---VVSRSFKMSLTRDCICPMVLTRGSD 500
K + D +SV++ GT+ P+ D +LL F P +V+ S + + VL+
Sbjct: 622 KSLVDEARSVILAGGTMEPMSDFRQQLLPFVPPDRLVTFSCGHVIPPSNLMVSVLSASPK 681
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS---GI 557
LP KFD R + + G+ L + +I+P G+V F SY+++D+++A W D+ G+
Sbjct: 682 GLPFEFKFDSRDNLELVDELGRTLANLCNIIPAGLVVFVPSYAFLDKVMARWKDAASGGV 741
Query: 558 LKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRG---------AVFFSVARGKVAEGI 608
L+ + K +F E + +E L Y A A+ F+V K++EGI
Sbjct: 742 LQRLGSKKKIFTEPKTTMEVDKVLGEYTAAIRAKDAKTGAAGGGGAIMFAVVGAKLSEGI 801
Query: 609 DFDRHYGRLVIMFGVPF 625
+F R V+M G+PF
Sbjct: 802 NFSDDLARGVVMVGMPF 818
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 20/220 (9%)
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG-PAAKILAIGLSSRKNLCVNSRV 121
+PE ++IY +RT ++ + +AELK Q L + IGL SRK +C+N V
Sbjct: 239 EPETLPRVIYASRTHSQLSQFVAELKKTLFGQVDILDFEKLPVRTIGLGSRKQMCINEEV 298
Query: 122 LAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP------PGVY 175
R A +R ++A + C +++ A VL V
Sbjct: 299 QRI-GRSRGSEAMNERCLELMKAKKGKT----KCPSLPPFDQVGRAQVLEFRDAAMAEVG 353
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLL--DPKVAGIISKEMQKESVVVF 233
++DL GKQ CPYF AR + A +V Y LL D + A IS E +V+
Sbjct: 354 DIEDLVQLGKQTKTCPYFAARSSAKQAELVTLPYNLLLQKDARNALGISLE---GCIVLI 410
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERF 273
DEAHN+ + + SV+V + + A++ +I+ +E+F
Sbjct: 411 DEAHNLIDTILSTHSVTVDSRQIAQASK---QIDTYLEKF 447
>gi|339239905|ref|XP_003375878.1| DNA repair helicase family protein [Trichinella spiralis]
gi|316975433|gb|EFV58877.1| DNA repair helicase family protein [Trichinella spiralis]
Length = 810
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 14/196 (7%)
Query: 444 VKPVFDRFQSVVITSGTLSPI-DLYPRLLNF-----HPVVSRSFKMSLTRDCICPMVLTR 497
++ VF +SVV+ GT+ PI +L RL + +V S ++ I P++L
Sbjct: 479 LEDVFKEARSVVLAGGTMEPISELNSRLFDILSIPKQRIVQFSCDHVVSNKNILPIILHT 538
Query: 498 GSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGI 557
G + F R+ + + G LV++ I+P GIVCF SY+Y + + SG+
Sbjct: 539 GPGGNVLKFDFSSRTSAAIFQELGNCLVQLSKIIPGGIVCFLPSYNYEETVFQYLKKSGL 598
Query: 558 LKEIMQHKLVFIETQDVVETTLALDNYRKAC--------DCGRGAVFFSVARGKVAEGID 609
L+E+ K +F E + + L Y GA F+V GK++EGI+
Sbjct: 599 LQELAAKKEIFREPKTASDVNSVLSKYADVVMKFGTNNNSEKNGAFLFAVVGGKMSEGIN 658
Query: 610 FDRHYGRLVIMFGVPF 625
F R VIM G+P+
Sbjct: 659 FSDALARCVIMVGLPY 674
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 27/215 (12%)
Query: 69 KLIYCTRTVHEMEKTLAEL-KLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENR 127
K+ YC+RT ++ + EL K +H T + L SR+ LC+N V ++
Sbjct: 172 KIYYCSRTHSQLAQIAQELCKSVHEEST---------TMVTLGSRQTLCINESVRKLKSV 222
Query: 128 DSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQ 187
++ C L E+ ++ + + +K + L D+ G
Sbjct: 223 GLMNEKCLD--------LQKESSKVKKSDHGCSKKKKSKCPFLRR-----DDVLHLGTAV 269
Query: 188 GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEAL 247
CPY+ R V A++V+ YQ + + E VV+ DEAHN+
Sbjct: 270 RACPYYACRKSVAAADIVLMPYQMFFNRATRNTCGLSLS-ECVVIVDEAHNLLETIESMY 328
Query: 248 SVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR 282
+ Q L A + L Q I+R++ + LR
Sbjct: 329 RFEICFQKLNLAKQQL---QQYIQRYQTKNLLHLR 360
>gi|409044127|gb|EKM53609.1| hypothetical protein PHACADRAFT_148290 [Phanerochaete carnosa
HHB-10118-sp]
Length = 859
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 15/185 (8%)
Query: 456 ITSGTLSPI-DLYPRLLNFHP---VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+ GT+SPI D+ +L F P + + S + + + +V+ +G + KF+ R
Sbjct: 565 LAGGTMSPISDITAQLFPFVPQERLTTFSCGHIVPPNSLQTLVVKKGPKGSQMQFKFESR 624
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+D + G++L S+VP G+V F SY ++ ++ W SG+L+ + K VF E
Sbjct: 625 NDHALLAELGQVLFNFASLVPGGMVVFVPSYGFLHTVMGVWEKSGLLERLRSKKKVFTEP 684
Query: 572 QDVVETTLALDNY----RKACDCG-------RGAVFFSVARGKVAEGIDFDRHYGRLVIM 620
Q+ E L +Y + A D RGA+ F+V K++EG++F + R V++
Sbjct: 685 QESAEVETVLRDYAAEIQSAGDGAPADTSKKRGALLFAVVGAKLSEGLNFSDNLARAVVI 744
Query: 621 FGVPF 625
G+PF
Sbjct: 745 VGLPF 749
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 94/207 (45%), Gaps = 22/207 (10%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLH------NYQTRHLGPAAKILAIGLSSRKNLCVNSRV 121
K+ Y +RT ++ + L EL+ L + ++ I + L+SRK LCVN +
Sbjct: 190 TKIYYTSRTHSQLSQVLQELRKLSISLSPSSDDEQNDASVVDIRTVSLASRKQLCVNEK- 248
Query: 122 LAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVY-TLQDL 180
L + D +D ACR+ L +E + + C + + + + T +D+
Sbjct: 249 LKGKGGD-LDEACRQ--------LLSEKGD-KRCSYLPPADDETRMLDMRDQILATPKDI 298
Query: 181 RAF---GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+ G++ CPYF +R + A +V+ Y LL + ++ + V++ DEAH
Sbjct: 299 ESLVQTGQESRTCPYFGSRKAILQAQLVLLPYNLLLQRTARESLGIDL-TDQVIIVDEAH 357
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLS 264
N+ + + +V + +TL + LS
Sbjct: 358 NLISTLLSLSTVQLPLRTLSTSLNQLS 384
>gi|322792265|gb|EFZ16249.1| hypothetical protein SINV_00648 [Solenopsis invicta]
Length = 599
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 24/210 (11%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID--------LYPRLLNFHPVVSRSFKM 483
L++ C + ++ P+ +SV++ SGTL+P +PR++N + ++ +
Sbjct: 294 TLKVICMNPAVTFAPLARDTRSVILASGTLTPTTSFQSELGTKFPRIVNPNHIIPK---- 349
Query: 484 SLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYS 543
D I + R + ++ + N G L++++ VP G++CFF SY
Sbjct: 350 ----DQIYIRCIPRAPNGQSFKVVYEEVNKWTFQDNLGNLVIQVCDAVPYGVLCFFSSYH 405
Query: 544 YMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR--------GAV 595
M+ I W ++ + ++ K +F+E +D E ++ YR + GA+
Sbjct: 406 VMNTICNRWKENKMWDKLSTLKTIFMEPKDHRENHQVMEEYRSVIEKSSTQSFRDSCGAL 465
Query: 596 FFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
F+V RGK+AEGIDF + R V+ G+P+
Sbjct: 466 LFAVFRGKMAEGIDFSDNEARCVLAIGIPY 495
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 26/192 (13%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ Y TRT ++ + + ELK K + I LSSR + C+ NR+
Sbjct: 7 KIYYGTRTHKQIAQVVKELK--------RTAYKHKRMTI-LSSRDHTCIQQ-----TNRN 52
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFF-ENYEKAASAAVLPPGVYTLQDLRAFGKQQ 187
D L + N +TC ++ E+ +K AS P + ++DL + G
Sbjct: 53 KNDLC---------NELLDPHKN-KTCPYYNEHSKKKASIFGSMPTPWDIEDLVSLGNSI 102
Query: 188 GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEAL 247
G CPYF AR ++ A+++ Y Y+LDP + + ++ + +V+ DEAHNI+++C EA
Sbjct: 103 GACPYFGARSLMTKADIIFCPYNYILDPAIRESMQIRLRGD-IVILDEAHNIEDICREAA 161
Query: 248 SVSVRRQTLEGA 259
+V +R + A
Sbjct: 162 NVILRDDEINTA 173
>gi|255084633|ref|XP_002508891.1| predicted protein [Micromonas sp. RCC299]
gi|226524168|gb|ACO70149.1| predicted protein [Micromonas sp. RCC299]
Length = 915
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 103/243 (42%), Gaps = 56/243 (23%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPI-----DLYPRLL-----NF------------HPV 476
DA+ K + D ++VV+ GTL+PI L+P + F H
Sbjct: 541 DAAARFKQIVDDARAVVLVGGTLAPIPELAAQLFPDAVPEEDGTFEGANDEKSSAVQHGK 600
Query: 477 VSRSFKM-----SLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIV 531
+ R+ + RD + P+ + RG + F RS P G+LL +
Sbjct: 601 IPRTLTTLSCGHVVPRDALLPLAVARGPSGRALDYSFGSRSAPEAIDELGRLLANACRVA 660
Query: 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY------- 584
P G+V FF S++Y D++ W +G+ EI +HK +F E + + L ++
Sbjct: 661 PGGVVVFFPSFAYADDVYDRWVKTGVNSEIARHKAIFREPRAAAKVEKVLRDFATSVRNG 720
Query: 585 ---RKAC------------------DCGR-GAVFFSVARGKVAEGIDFDRHYGRLVIMFG 622
R+A GR GAV V GK++EGI+F GRLV+M G
Sbjct: 721 EERRRAAVAAHSGVSENGSVGSSGVPAGRTGAVMLCVCGGKLSEGINFKDELGRLVVMVG 780
Query: 623 VPF 625
+P+
Sbjct: 781 LPY 783
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 31/198 (15%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCV--------- 117
P+++I+C+RT ++ + + EL +T G + A+ ++SR LCV
Sbjct: 156 PLQVIFCSRTHSQLTQVVGELN-----RTSFGGEDGTVNAVAVASRAQLCVNPEARAAAG 210
Query: 118 ------NSRVLAAENRDSVDAACRKRTASWVRALA-----AENPN---IETCEFFENYEK 163
N R L + RK A+ P C + +
Sbjct: 211 ASAARLNERCLELGKPKAKGERARKGGEGGGVGGRDGADGADKPRPAAGSGCPYLKKRHA 270
Query: 164 AASAAVLPPGVYTL--QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGII 221
A + + +DL A G + C Y+ AR + A++V Y LL + +
Sbjct: 271 AVADLADAALAAPMDIEDLAAAGTRHRACAYYAARKALPRADLVFAPYASLLHKETRESL 330
Query: 222 SKEMQKESVVVFDEAHNI 239
+ K SVVVFDEAHN+
Sbjct: 331 GINL-KGSVVVFDEAHNL 347
>gi|402588914|gb|EJW82847.1| hypothetical protein WUBG_06243, partial [Wuchereria bancrofti]
Length = 550
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 6/184 (3%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+SV++TSGTLSP+D + L V+ + + D I + + + F R
Sbjct: 32 RSVIVTSGTLSPLDSFINNLGISFPVTLENQHAANVDQILCARIRSSQSGIDLCGTFHKR 91
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG-----ILKEIMQHKL 566
S G+++V I+PDGI+ FF SY M+ + W I K I+ +K
Sbjct: 92 SSSAYVFGIGEVIVRACQIIPDGILVFFSSYVTMNTCLKFWKTLKFGPMFIWKTILAYKE 151
Query: 567 VFIETQDVVETTLALDNYRKACDCG-RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
F+E + +E L +R+ G GA+ F+V R KV+EGIDF R VI+ G+P+
Sbjct: 152 AFVEPKSKLELKAVLLQFRQQVREGSNGAILFAVCRAKVSEGIDFLDSESRGVIVIGIPY 211
Query: 626 QYTL 629
T+
Sbjct: 212 APTM 215
>gi|326470360|gb|EGD94369.1| DNA repair helicase (rad3) [Trichophyton tonsurans CBS 112818]
Length = 847
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 15/205 (7%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLY-PRLLNFHP---VVSRSFKMSLTRDCICPMV 494
D + K + + ++V++ GT+ P+D Y LL++ P + + ++ + +D + +
Sbjct: 534 DPTSRFKELVEDARAVILAGGTMEPMDDYVNHLLSYVPRDKIKTFTYGHVIPKDNLMAIP 593
Query: 495 LTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW-N 553
+ RG D + FD R + + G+ + SI+PDG+V FF SY Y+ ++ W +
Sbjct: 594 IDRGMDGTEFNFTFDQRRSEKMIISLGRTISRYCSIIPDGVVVFFPSYDYLATVLKVWSS 653
Query: 554 DSGILKEIMQHKLVFIETQDVVETTLA----------LDNYRKACDCGRGAVFFSVARGK 603
SGIL + + K +F E Q T + L Y + D G+G + SV GK
Sbjct: 654 SSGILSSLSRLKPIFHEPQSTGSTNGSANANTNTDSLLSQYSASVDAGKGGLLLSVMGGK 713
Query: 604 VAEGIDFDRHYGRLVIMFGVPFQYT 628
++EGI+F GR VI+ G+PF T
Sbjct: 714 LSEGINFSDALGRGVIVVGLPFPNT 738
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 112/272 (41%), Gaps = 42/272 (15%)
Query: 46 TGKTIALLSLITSYV----LSKPENPVKLIYCTRTVHEMEKTLAELK-----------LL 90
+ T+ALL + L + VK+IYC+RT ++ + E++ L
Sbjct: 154 SSDTLALLEKLKGPARQIELEEDGESVKIIYCSRTHSQLIQFAQEMRRVMPISSIPPELD 213
Query: 91 HNYQTRHLGPAAK----ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
N + G I L+SRK LC+N V + + +++ C L
Sbjct: 214 DNLEEEKKGNQQDEGEWIKHTPLASRKTLCINPSVRSLSSATAINERC----------LE 263
Query: 147 AENPNI---ETCEFFENYEKAASAAV----LPPGVYTLQDLRAFGKQQGWCPYFLARHMV 199
+ PN+ C + + + L V ++DL G + CPY+ AR +
Sbjct: 264 IQRPNVAAEHKCPYLPTKDNELKTSQFQDHLLARVNDIEDLPPLGTKMSICPYYAARTAM 323
Query: 200 QFA--NVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLE 257
+ + VV Y LL ++ K SV+V DEAHN+ + + SV+V L+
Sbjct: 324 RASATEVVTLPYPLLLQQSAREALNLSA-KNSVIVIDEAHNLIDAIVNIHSVTVSLSQLK 382
Query: 258 GATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
A L++I RFK+ GR R +L+
Sbjct: 383 TA---LAQITTYARRFKSRLKGRNRVYIAQLI 411
>gi|242814468|ref|XP_002486375.1| DNA helicase, putative [Talaromyces stipitatus ATCC 10500]
gi|218714714|gb|EED14137.1| DNA helicase, putative [Talaromyces stipitatus ATCC 10500]
Length = 860
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 102/206 (49%), Gaps = 12/206 (5%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYP----RLLNFHPVVSRSFKMSLTR 487
+L+ D + + + D ++V++ GT+SP+ Y L+ + + SF +
Sbjct: 537 ILRYMLLDPTNHFRDIVDEARAVILAGGTMSPMSDYADHLFSYLSSAKLDTFSFGHVIPP 596
Query: 488 DCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDE 547
+ +L +G + FD R+ + + G+ + + +++PDG+V FF SY Y+++
Sbjct: 597 KNLTARILAKGVLGNDFNFIFDQRTSDSMITDLGQTIANLCAVIPDGVVAFFPSYDYLNQ 656
Query: 548 IIATWND-----SGILKEIMQHKLVFIETQDVVETTLALD---NYRKACDCGRGAVFFSV 599
++ TW I EI + K + E+ + + + D Y K + G GA+ SV
Sbjct: 657 VLNTWRKPSKTGGSIFAEIEKRKPIVYESNNQKKESNTDDVLLEYSKKVESGSGALLLSV 716
Query: 600 ARGKVAEGIDFDRHYGRLVIMFGVPF 625
G+++EGI+F GR V++ G+PF
Sbjct: 717 VGGRLSEGINFSDKLGRGVLIVGLPF 742
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 115/275 (41%), Gaps = 39/275 (14%)
Query: 46 TGKTIALLSLITSYVLSKPE------NPVKLIYCTRTVHEMEKTLAELK----------L 89
+ T+ALL V E N ++ YC+RT ++ + EL+ L
Sbjct: 168 SASTVALLDRFKGRVTGSKESENDNENQTRIYYCSRTHSQLSQFAQELRRVTLPSSLPPL 227
Query: 90 LHNY---QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
N Q H I + L SRK LC+N RVL N +++ C + S V A
Sbjct: 228 QENADAEQKEHAELEEVIKHLTLGSRKQLCINPRVLNLGNATAINERCMELQQSGVAA-- 285
Query: 147 AENPNIETCEF-----FENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
+ C + FE+ + VL V ++D+ GKQ CPY+ AR ++
Sbjct: 286 -----DKKCSYLPRKEFEDVQLDFRDRVLST-VQDIEDITQVGKQLSICPYYAARKVIDQ 339
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
++ Y LL + + ++ VV+ DEAHN+ + SVSV TL+
Sbjct: 340 CEIITLPYPLLLQRSSREALDLSL-RDHVVIIDEAHNLMDAISNIHSVSV---TLDQLRT 395
Query: 262 NLSRINQEIERFKATDAGRLR---AEYNRLVEGLA 293
+L ++ +F+ G+ R + RLV LA
Sbjct: 396 SLFQLTTYARKFQTRLKGKNRVYVTQVIRLVSALA 430
>gi|123505191|ref|XP_001328927.1| helicase [Trichomonas vaginalis G3]
gi|121911876|gb|EAY16704.1| helicase, putative [Trichomonas vaginalis G3]
Length = 884
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 144/353 (40%), Gaps = 89/353 (25%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
FK+ + V FP++ Y Q + M + +++ + +LE PTGTGK+IALLS ++ S
Sbjct: 10 FKVAGIEVPFPHEKPYAAQMALMAGVIKSMRTGQNAILESPTGTGKSIALLSAALAFQKS 69
Query: 63 KPE---------------------NPVKLIYCTRTV-----------------HEMEKTL 84
+ E P+KL++ + + E E T
Sbjct: 70 QKEVNITPPGQIDPPITKSYLGFFPPMKLVHTDQEIFSPLLTQGLNPSEIPRYSEFEGTE 129
Query: 85 AELKLLHNYQTRHLGPAAKIL------------------------AIGLSSRKNLCVNSR 120
++ + A +I + ++SR +CVN +
Sbjct: 130 GPTDYTTDFYVKRKQHAGQIWYATRTHQQLKQLVKEMKKLPFHPQMVIMASRAQVCVNPK 189
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGV---YTL 177
++ N+ VD C + C + + +K P G+ + +
Sbjct: 190 IM---NQSDVDGHCSDLQKN------------GGCPY--DKKKGIPKEFKPNGILDKFEI 232
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+DL+ + ++ CPYF++R M+ A++V Y Y LDPK+ G + ++ +++ DEAH
Sbjct: 233 EDLKDWCRKNKGCPYFISRKMMMAADIVFCPYNYFLDPKIKGQMQLDLTGVYLII-DEAH 291
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVE 290
NI+N C + S R+ LE A L + K +D LR + ++E
Sbjct: 292 NIENSCRDGGSFHQSRKDLEWALMYLRK------SIKKSDIPSLRKAFMIVLE 338
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 96/179 (53%), Gaps = 13/179 (7%)
Query: 453 SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFD--- 509
+V+++SGTL+P++ + + S ++ D + +T D + +S++
Sbjct: 471 NVILSSGTLTPLEEFENEFGVPFPIRLSAPHVISPDQVVGFTIT-SCDNVTLSSRHQYLE 529
Query: 510 ---MRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKL 566
MR+D V ++L+ ++ ++P+G++ F S+S++ ++ W +G+ ++I + K
Sbjct: 530 SQGMRND--VNLKLAEILLHILPVIPNGVLFFVTSHSFLMRMLDAWQKAGLYEKIDKIKK 587
Query: 567 VFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+F ET D D Y+ +C+ G++ V RG+ +EGIDF R VI+FG+PF
Sbjct: 588 IFYETPD--SDPEFFDKYKASCE--EGSLLIGVFRGRSSEGIDFVDEQARAVIVFGIPF 642
>gi|322801298|gb|EFZ21985.1| hypothetical protein SINV_11349 [Solenopsis invicta]
Length = 908
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 10/184 (5%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM------VLTRGSDQLPVS 505
+SVV+ GT+ P+ + L + M+ + D + P V+ RG +
Sbjct: 625 RSVVLAGGTMEPMSEFIDQLFLMAGATSDRIMTFSCDHVIPKENIISNVVMRGPTGVEFE 684
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
F R D + G+ L+ + ++VP GIV FF SY+Y D + + SGI+ +I K
Sbjct: 685 FNFHNRQDTRLLDELGRALLNLCNVVPAGIVAFFPSYNYEDTVFKHLDKSGIITKISAKK 744
Query: 566 LVFIETQDVVETTLALDNYRKACDCGR----GAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
++ E + + LD Y + + GA+ FSV GK++EG++F GR VI+
Sbjct: 745 CIYREPKSASQVNTILDQYAHSIKNSQSPCNGALLFSVVGGKLSEGLNFSDDLGRCVIVI 804
Query: 622 GVPF 625
G+P+
Sbjct: 805 GLPY 808
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 112 RKNLCVNSRVLAAENRDSVDAAC----RKRTASWVRALAAENPNIETCEFFENYEKAASA 167
R+N C+N V ++ + ++ C RK+T ++ C F +K A
Sbjct: 265 RQNYCINKSVKRLKHINLINEICLQLQRKKTTVKKEKGLKKSKTTRGCPFIPGDQKLLMA 324
Query: 168 AVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQK 227
+L + ++++ G++ CPY+ +R VQ +++ Y +L + ++ K
Sbjct: 325 EILS-NIQDVEEIMERGQENNTCPYYSSRKSVQNGQLILVPYNSILHKNTRTSLGIDL-K 382
Query: 228 ESVVVFDEAHNI 239
+V++ DEAHN+
Sbjct: 383 GNVLIIDEAHNL 394
>gi|326478541|gb|EGE02551.1| DNA helicase [Trichophyton equinum CBS 127.97]
Length = 850
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 15/205 (7%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLY-PRLLNFHP---VVSRSFKMSLTRDCICPMV 494
D + K + + ++V++ GT+ P+D Y LL++ P + + ++ + +D + +
Sbjct: 537 DPTSRFKELVEDARAVILAGGTMEPMDDYVNHLLSYVPRDKIKTFTYGHVIPKDNLMAIP 596
Query: 495 LTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW-N 553
+ RG D + FD R + + G+ + SI+PDG+V FF SY Y+ ++ W +
Sbjct: 597 IDRGMDGTEFNFTFDQRRSEKMIISLGRTISRYCSIIPDGVVVFFPSYDYLATVLKVWSS 656
Query: 554 DSGILKEIMQHKLVFIETQDVVETTLA----------LDNYRKACDCGRGAVFFSVARGK 603
SGIL + + K +F E Q T + L Y + D G+G + SV GK
Sbjct: 657 SSGILSSLSRLKPIFHEPQSTGSTNGSANANTNTDSLLSQYSASVDAGKGGLLLSVMGGK 716
Query: 604 VAEGIDFDRHYGRLVIMFGVPFQYT 628
++EGI+F GR VI+ G+PF T
Sbjct: 717 LSEGINFSDALGRGVIVVGLPFPNT 741
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 42/272 (15%)
Query: 46 TGKTIALLSLITSYV----LSKPENPVKLIYCTRTVHEMEKTLAELK-----------LL 90
+ T+ALL + L + E VK+IYC+RT ++ + E++ L
Sbjct: 157 SSDTLALLEKLKGPARQIELEEDEESVKIIYCSRTHSQLIQFAQEMRRVMPISSIPPELD 216
Query: 91 HNYQTRHLGPAAK----ILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALA 146
N + G I L+SRK LC+N V + + +++ C L
Sbjct: 217 DNLEEEKKGNQQDEGEWIKHTPLASRKTLCINPSVRSLSSATAINERC----------LE 266
Query: 147 AENPNI---ETCEFFENYEKAASAAV----LPPGVYTLQDLRAFGKQQGWCPYFLARHMV 199
+ PN+ C + + + L V ++DL G + CPY+ AR +
Sbjct: 267 IQRPNVAAEHKCPYLPTKDNELKTSQFQDHLLARVNDIEDLPPLGTKMSICPYYAARTAM 326
Query: 200 QFA--NVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLE 257
+ + VV Y LL ++ K SV+V DEAHN+ + + SV+V L+
Sbjct: 327 RASATEVVTLPYPLLLQQSAREALNLSA-KNSVIVIDEAHNLIDAIVNIHSVTVSLSQLK 385
Query: 258 GATRNLSRINQEIERFKATDAGRLRAEYNRLV 289
A L++I RFK+ GR R +L+
Sbjct: 386 TA---LAQITTYARRFKSRLKGRNRVYIAQLI 414
>gi|330038759|ref|XP_003239692.1| DNA repair helicase component of transcription factor b
[Cryptomonas paramecium]
gi|327206616|gb|AEA38794.1| DNA repair helicase component of transcription factor b
[Cryptomonas paramecium]
Length = 723
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 125/662 (18%), Positives = 255/662 (38%), Gaps = 77/662 (11%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MI +++++V FP++ +YPEQ +K++ D K H ++ P G G + + SY
Sbjct: 1 MILLIDNLSVSFPFEVVYPEQIQIAYIIKKSFDKKNHSIMGTPCGVGLSFIVFCFFISYK 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAK-----ILAIGLSSRKNL 115
L + T + E L E KL+ Y+ HL L + +K L
Sbjct: 61 KFLKTKKTLLYWVTNQI-ETFLLLQEWKLI--YKKLHLFENKNSNLFYTLVCAILDKKKL 117
Query: 116 CVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNI-----ETCEFFENYEKAASAAVL 170
C++SR+ + N V+ C ++ + TC FF N+ +
Sbjct: 118 CIDSRINSELNIQQVEDLCHHLIFYYMFKKKKKMHKRLLKKRTTCLFFRNFL-YEHKRLQ 176
Query: 171 PPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESV 230
+ T +LR G + CP++ R ++ A++ V + L + ++S K S
Sbjct: 177 FNSILTSDELREKGIRSKVCPFYWLRDIIINADITVGNVSDLFLSQNFNLLSTHQLKYSF 236
Query: 231 VVFDEAHNIDNV-----CIEALSVSVRRQTLEGATRNLSR--INQEIERFKATDAGRLRA 283
+FD + ID + C + + +R G + I Q +++ K R+
Sbjct: 237 SIFDNVYEIDGLFNNFFCFQISEIVIRDSY--GIFLFFKKLLIKQSLKKTKFFIFKRML- 293
Query: 284 EYNRLVEGLALRGNLP-------IADAWLSNPALPSDILKEA-VPGNIRRAEHFLHVLRR 335
L L+ N+ I S K + IRR +H L
Sbjct: 294 --------LYLKKNINSYKKFACIMHNRFSGGCFICLFFKNYHLKKKIRRLFQLVHFLEE 345
Query: 336 LVQYLRGRL--------ETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLE 387
L+ Y + + + + K + + + ID+ +++L L ++
Sbjct: 346 LIFYFKNSVFNDLFSHKYVKKIVKNFKEKMYTTDISFSYIDK-----FFKQLVKLKTSIR 400
Query: 388 ITDTDEFLHIQTICDFATLVGTYTRGFS-IIIEPFDERMPH--IPDPVLQLSCHDASLAV 444
I + ++ I+ + F ++ Y + I F+ + + + + L C +++L
Sbjct: 401 ILENRKYESIKKLLAFVQILFFYEESMNEHIYFIFNSKRKYRFLSETSLNFVCMESTLLF 460
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
K +F++ + V+ + S + +Y + N P++ + I + L + +
Sbjct: 461 KLIFEKIKCVIFFTNVFSDLKVYILITNHKPLIYGT---------INYINLKYKNMLTLI 511
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKE---- 560
+ K + + +++I+ +G+V ++ +I + S + ++
Sbjct: 512 NQKLKKAKLANLNSMSFSFFIYVLNIISEGLV-------FLSKIFFFFFFSRLYQKKSNL 564
Query: 561 IMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIM 620
I + + IET D + L+NY+ D G + F G + E + Y + V+M
Sbjct: 565 IPKKAKILIETGDFLSDIFFLENYKLYTDLGMKSFFIGFYGGVLFES-NLSFIYRKKVVM 623
Query: 621 FG 622
F
Sbjct: 624 FN 625
>gi|162462746|ref|NP_001104820.1| FancJ-like protein [Bombyx mori]
gi|161339205|dbj|BAF94023.1| FancJ-like protein [Bombyx mori]
Length = 851
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 3/177 (1%)
Query: 450 RFQSVVITSGTLSPIDLYPRLLNFHPVVS-RSFKMSLTRDCICPMVLTRGSDQLPVSTKF 508
+ +S+++ SGTLSP+ L VS + +S R I + S+QL TK
Sbjct: 570 KARSIILASGTLSPVGSMKHELGAEFNVSCLNHVISRERVWIGTLRNCESSEQLKC-TKD 628
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
+M V + GK ++ + + P G++CF SY+ M + W +G+ ++ K +F
Sbjct: 629 NMEKKQ-VQDSIGKAILRVCDVTPHGVLCFHSSYTSMRLLHQRWQQTGLWDKLNSLKYIF 687
Query: 569 IETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
E+ + + + Y A + RGA+ F+V RGKV+EG+DF R V+ GVPF
Sbjct: 688 KESDNTTDHDEIMKEYYSAAEVDRGAILFAVYRGKVSEGMDFRDRQARAVVTIGVPF 744
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 106/214 (49%), Gaps = 31/214 (14%)
Query: 62 SKPENPVK------LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNL 115
S +NP K + Y TRT ++++ + E K R + ++I L+ R
Sbjct: 213 SNSQNPPKHERVPVVYYGTRTHKQLQQVIKEFK-------RTVYCKEIRMSI-LAGRDRT 264
Query: 116 CV---NSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP 172
C+ + +V + +D + A C K +S + A +P +C+F++N + + + LPP
Sbjct: 265 CLMPFDRKVW--KTKDDMCAECIKTKSS---LMNASSPQTSSCKFYDN-RMSLTHSNLPP 318
Query: 173 GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQ---KES 229
+ ++DL G + CPYF A+ M A ++ Y YL++P I + M+ ++
Sbjct: 319 A-FDIEDLVEAGAKLKACPYFAAKSMAARAKIIFCPYNYLINP----FIRERMRINLADN 373
Query: 230 VVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL 263
+VV DE HNI+++C + + ++ R+ + A L
Sbjct: 374 IVVIDEGHNIEDICRDEATCTIERRRISEAVDQL 407
>gi|297705156|ref|XP_002829449.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like, partial [Pongo abelii]
Length = 87
Score = 90.5 bits (223), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 60/84 (71%)
Query: 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ 94
+GH +LEMP+GTGKT++LL+LI +Y + P KLIYC+RTV E+EK + EL+ L N+
Sbjct: 2 QGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFY 61
Query: 95 TRHLGPAAKILAIGLSSRKNLCVN 118
+ G + L + LSSRKNLC++
Sbjct: 62 EKQEGEKLQFLGLALSSRKNLCIH 85
>gi|355717481|gb|AES05950.1| regulator of telomere elongation helicase 1 [Mustela putorius furo]
Length = 1114
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 25/218 (11%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K++Y +RT ++ + + EL RH ++ +G SR+ LC++ V E+
Sbjct: 27 KIVYASRTHSQLTQAIGEL--------RHTSYRPRVCVLG--SREQLCIHPEVKKQESSH 76
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQG 188
CRK+ AS +C F+ N E+ + L + ++DL G +
Sbjct: 77 MQIHLCRKKVAS------------RSCHFYNNVEEKSLERELATTILDIEDLVRSGNKHS 124
Query: 189 WCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
CPY+L+R++ Q A+++ Y YLLD K ++ K +VV+FDEAHN++ +C E S
Sbjct: 125 LCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHGIDL-KGTVVIFDEAHNVEKMCEETAS 183
Query: 249 VSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYN 286
+ L L ++ + E+ KA G L +++
Sbjct: 184 FDLTPHDLASGLDVLDQLLE--EQTKAAQQGELHVDFS 219
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 2/176 (1%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMR 511
+SV++TSGTL+P+ + V +++ I ++ +G D +S+ FD R
Sbjct: 391 RSVILTSGTLAPVSSLALEMQIPFPVCLENPHVISKQQIWVGIVPKGPDGAQLSSAFDKR 450
Query: 512 SDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET 571
+ GK L + +VP G++ FF SY M++ + W +++ K VF+E
Sbjct: 451 FSDVCLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLEFWRAHDFARKLEALKPVFVEP 510
Query: 572 QDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ + + Y K A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 511 RSKGGFSEVVGAYYKQVAAPGSSGASFLAVCRGKASEGLDFADMNGRGVIVTGLPY 566
>gi|324502086|gb|ADY40918.1| Fanconi anemia group J protein [Ascaris suum]
Length = 962
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 91/197 (46%), Gaps = 8/197 (4%)
Query: 437 CHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLT 496
C +LA F +SV++ SGTL P+D + L + D I V+
Sbjct: 646 CMRPALAYLDAFKECRSVILASGTLCPMDTFRSELGTEFQQMMEGSQVIPSDHIFAAVIP 705
Query: 497 RGSDQLPVSTKF-DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS 555
G P+ + ++ SD R LL + IVP G++CF SY +D+I +
Sbjct: 706 SGPTGYPLCGTYRNINSDDRFVREISLLLKSVCEIVPKGVLCFLASYRLLDQIYEFMETA 765
Query: 556 GILKEIMQHKLVFIETQDVVETTLALDNYRKA-CDCGR------GAVFFSVARGKVAEGI 608
GIL++I K V E + + + Y +A + R GA+ F+V RGKV+EGI
Sbjct: 766 GILRQIQTIKRVLCEPRRSSQMNEIMAQYEEAITNSARYGPQCTGALMFAVFRGKVSEGI 825
Query: 609 DFDRHYGRLVIMFGVPF 625
DF R V+ G+PF
Sbjct: 826 DFADDRARCVVSVGIPF 842
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 32/217 (14%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLL---HNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
V + Y TRT ++ + + E L H+ RH ILA SR++ C+N LA
Sbjct: 226 VTIYYGTRTHKQISQVVGEFARLPYGHDGTIRHT-----ILA----SREHSCIN---LAV 273
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVL-------PPGVYTL 177
N V+ C++ ++ + +N YEK+ S L V+ +
Sbjct: 274 RNSGDVNGKCKELISAAGVGCSYKN------SMRGKYEKSGSVRKLVSQNLERSDDVWDI 327
Query: 178 QDLRAFGKQQ--GWCPYFLA-RHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
+DL + K CPYF + R + Q A++V + Y+LDP + S K +VV+ D
Sbjct: 328 EDLVSALKTSSPALCPYFSSTRVLTQDADIVFCPFSYMLDPIIRDN-SDVTLKNAVVILD 386
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIE 271
EAHN+++VC EA+S S + + G +L + E+E
Sbjct: 387 EAHNVEDVCREAVSFSFTEREIVGTRADLCKKAAEVE 423
>gi|406606908|emb|CCH41762.1| chromosome transmission fidelity protein 1 [Wickerhamomyces
ciferrii]
Length = 814
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 10/196 (5%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS----LTRDCICPMV 494
D S K + + + V++ GT+ P++ Y L + S+ K S + ++ + +
Sbjct: 521 DPSQIFKEIVEEVKCVILAGGTMEPVEDYTNYLFPYLEPSKVNKFSCGHIIPKENLNVFI 580
Query: 495 LTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND 554
+ + + S F R D + ++G+ L ++ VP G+V F SY ++ +I++ W
Sbjct: 581 IDKNKSEFEFS--FGKRQDNLMKEDFGRSLCSLMKNVPAGMVVFLPSYKFLADIVSVWKK 638
Query: 555 SGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHY 614
S I EI K VF+E+ TT L++Y G+G++ SV G+++EGI+F
Sbjct: 639 SNIWNEINFIKKVFMESA----TTDVLEDYSLNVAEGKGSLLLSVVGGRLSEGINFSDDL 694
Query: 615 GRLVIMFGVPFQYTLS 630
R V+M G+PF S
Sbjct: 695 ARAVVMVGLPFPNVFS 710
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 18/211 (8%)
Query: 62 SKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV 121
S E VK+++ +RT ++ + ++L L H + + +G + + L SRK LC++ +V
Sbjct: 196 SNSEKDVKVLFASRTHSQLSQFSSQLTLPH-FPSSIVGIEEHLKYLSLGSRKQLCIHEKV 254
Query: 122 LAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP-------PGV 174
+ ++ AC + + CEFF + + + V
Sbjct: 255 SKMSDVSLMNEACLD---------LQKQESKHKCEFFSSQKDHDMQNRIIEFRDHIFSKV 305
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
++DL + GK G CPY+ R + + V+ YQ LL ++ + K+ VVV D
Sbjct: 306 QDIEDLNSVGKNLGVCPYYSTRKAIPGSEVITLPYQLLLQKSSRDALNISI-KDCVVVID 364
Query: 235 EAHNIDNVCIEALSVSVRRQTLEGATRNLSR 265
EAHN+ + I SV+V + L R
Sbjct: 365 EAHNLLDTIISLHSVAVTIDEFSACKKALKR 395
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,395,866,922
Number of Sequences: 23463169
Number of extensions: 377567941
Number of successful extensions: 934422
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 1176
Number of HSP's that attempted gapping in prelim test: 925215
Number of HSP's gapped (non-prelim): 5770
length of query: 631
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 482
effective length of database: 8,863,183,186
effective search space: 4272054295652
effective search space used: 4272054295652
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)