Query 006790
Match_columns 631
No_of_seqs 229 out of 1730
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 09:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a15_A XPD helicase, ATP-depen 100.0 1.6E-78 5.5E-83 672.5 35.7 518 14-631 2-532 (620)
2 3crv_A XPD/RAD3 related DNA he 100.0 3.1E-68 1.1E-72 586.7 33.6 465 13-631 1-478 (551)
3 2vl7_A XPD; helicase, unknown 100.0 5.7E-61 2E-65 526.6 34.2 455 12-631 4-469 (540)
4 1xti_A Probable ATP-dependent 99.8 9.5E-17 3.2E-21 169.2 25.7 75 12-91 26-100 (391)
5 3pey_A ATP-dependent RNA helic 99.7 1.5E-16 5E-21 167.8 24.6 76 12-90 23-98 (395)
6 1s2m_A Putative ATP-dependent 99.7 2.1E-16 7.3E-21 167.1 23.8 75 12-91 39-113 (400)
7 2db3_A ATP-dependent RNA helic 99.7 3.8E-16 1.3E-20 166.8 24.3 75 12-91 74-153 (434)
8 3sqw_A ATP-dependent RNA helic 99.7 5.9E-16 2E-20 171.7 25.7 78 11-91 38-119 (579)
9 1hv8_A Putative ATP-dependent 99.7 6.8E-16 2.3E-20 160.9 23.4 75 12-91 24-98 (367)
10 2i4i_A ATP-dependent RNA helic 99.7 9.1E-16 3.1E-20 163.1 24.0 75 12-91 33-125 (417)
11 2j0s_A ATP-dependent RNA helic 99.7 1.8E-15 6E-20 160.6 24.4 75 12-91 55-129 (410)
12 3i5x_A ATP-dependent RNA helic 99.7 2.7E-15 9.3E-20 166.0 26.0 78 11-91 89-170 (563)
13 3fht_A ATP-dependent RNA helic 99.7 2.6E-15 8.7E-20 159.3 22.3 77 12-91 43-119 (412)
14 2v1x_A ATP-dependent DNA helic 99.7 4.5E-15 1.5E-19 163.6 23.5 69 11-90 39-107 (591)
15 3eiq_A Eukaryotic initiation f 99.6 6.8E-15 2.3E-19 156.2 20.8 76 11-91 57-132 (414)
16 1oyw_A RECQ helicase, ATP-depe 99.6 3.1E-14 1.1E-18 155.1 25.9 69 11-90 20-88 (523)
17 3oiy_A Reverse gyrase helicase 99.6 1.9E-14 6.5E-19 152.9 23.1 71 11-90 17-87 (414)
18 3fho_A ATP-dependent RNA helic 99.6 2.9E-15 1E-19 163.2 10.3 76 12-90 137-212 (508)
19 3iuy_A Probable ATP-dependent 99.5 3.6E-14 1.2E-18 137.6 10.9 74 12-90 38-117 (228)
20 1qde_A EIF4A, translation init 99.5 3.9E-14 1.3E-18 137.0 11.1 75 12-91 32-106 (224)
21 3fe2_A Probable ATP-dependent 99.5 5.4E-14 1.9E-18 137.7 11.9 76 12-92 47-127 (242)
22 1vec_A ATP-dependent RNA helic 99.5 5.1E-14 1.7E-18 134.3 11.2 76 11-91 20-95 (206)
23 2eyq_A TRCF, transcription-rep 99.5 2.4E-12 8.4E-17 151.9 27.5 76 10-90 598-675 (1151)
24 3ber_A Probable ATP-dependent 99.5 1.1E-13 3.8E-18 136.0 13.0 76 11-91 60-135 (249)
25 4ddu_A Reverse gyrase; topoiso 99.5 1.7E-12 6E-17 152.2 25.2 71 11-90 74-144 (1104)
26 1wp9_A ATP-dependent RNA helic 99.5 2.2E-12 7.4E-17 139.4 24.2 68 14-90 8-75 (494)
27 1q0u_A Bstdead; DEAD protein, 99.5 4.5E-14 1.5E-18 136.1 9.6 75 12-91 22-96 (219)
28 3l9o_A ATP-dependent RNA helic 99.5 1.7E-12 5.9E-17 152.3 24.5 74 8-90 177-250 (1108)
29 1wrb_A DJVLGB; RNA helicase, D 99.5 1.8E-13 6.2E-18 134.9 13.2 75 12-91 41-124 (253)
30 2va8_A SSO2462, SKI2-type heli 99.5 1.8E-12 6.3E-17 147.3 23.1 73 12-90 26-98 (715)
31 3dkp_A Probable ATP-dependent 99.5 4.8E-14 1.6E-18 138.4 8.4 75 12-91 47-122 (245)
32 2oxc_A Probable ATP-dependent 99.5 1.1E-13 3.9E-18 134.3 11.0 76 11-91 41-116 (230)
33 1t6n_A Probable ATP-dependent 99.5 1.2E-13 4.2E-18 133.1 10.6 75 12-91 32-106 (220)
34 2p6r_A Afuhel308 helicase; pro 99.5 1.8E-12 6.1E-17 147.0 20.7 71 12-90 21-91 (702)
35 4a4z_A Antiviral helicase SKI2 99.5 1.9E-12 6.7E-17 150.5 21.1 74 8-90 32-105 (997)
36 2gxq_A Heat resistant RNA depe 99.4 3.5E-13 1.2E-17 128.4 11.8 74 12-90 19-95 (207)
37 2pl3_A Probable ATP-dependent 99.4 3.1E-13 1E-17 131.8 11.0 75 12-91 43-121 (236)
38 3bor_A Human initiation factor 99.4 2.5E-13 8.6E-18 132.5 10.3 75 12-91 48-122 (237)
39 3ly5_A ATP-dependent RNA helic 99.4 5.7E-13 2E-17 132.0 11.7 75 12-91 72-150 (262)
40 1gku_B Reverse gyrase, TOP-RG; 99.4 7.5E-12 2.6E-16 146.8 19.3 71 11-91 53-123 (1054)
41 1fuu_A Yeast initiation factor 99.4 1.3E-12 4.4E-17 137.5 10.6 75 12-91 39-113 (394)
42 3fmo_B ATP-dependent RNA helic 99.4 9.8E-13 3.4E-17 132.8 8.9 77 12-91 110-186 (300)
43 2z0m_A 337AA long hypothetical 99.3 3.1E-12 1.1E-16 131.4 11.7 70 11-91 11-80 (337)
44 4f92_B U5 small nuclear ribonu 99.3 1.2E-10 4.3E-15 141.6 25.7 71 14-89 924-994 (1724)
45 3b6e_A Interferon-induced heli 99.3 6.1E-12 2.1E-16 120.5 10.4 74 11-90 29-106 (216)
46 3tbk_A RIG-I helicase domain; 99.3 1.4E-11 4.7E-16 135.8 11.9 73 13-91 2-76 (555)
47 4a2p_A RIG-I, retinoic acid in 99.2 2E-11 6.9E-16 134.6 11.2 74 12-91 4-79 (556)
48 1gm5_A RECG; helicase, replica 99.2 9.2E-11 3.2E-15 132.2 15.7 76 11-91 364-441 (780)
49 2ykg_A Probable ATP-dependent 99.2 4.1E-11 1.4E-15 135.9 12.7 76 11-91 8-85 (696)
50 3fmp_B ATP-dependent RNA helic 99.2 1.3E-11 4.5E-16 133.5 7.4 77 12-91 110-186 (479)
51 4a2q_A RIG-I, retinoic acid in 99.2 6.6E-11 2.2E-15 135.9 11.4 74 13-91 245-320 (797)
52 1tf5_A Preprotein translocase 99.1 9E-09 3.1E-13 114.3 26.3 71 12-93 80-150 (844)
53 4gl2_A Interferon-induced heli 99.1 3.8E-11 1.3E-15 136.2 6.5 73 13-91 5-81 (699)
54 4a2w_A RIG-I, retinoic acid in 99.1 1.2E-10 4E-15 135.5 9.7 73 14-91 246-320 (936)
55 1rif_A DAR protein, DNA helica 99.1 4.4E-10 1.5E-14 112.4 12.4 69 14-90 112-180 (282)
56 1nkt_A Preprotein translocase 99.1 8.9E-09 3E-13 114.3 23.3 71 12-93 108-178 (922)
57 2fsf_A Preprotein translocase 99.1 1.7E-09 6E-14 119.6 16.2 70 13-93 72-141 (853)
58 2xgj_A ATP-dependent RNA helic 99.0 5.4E-10 1.8E-14 130.0 12.2 73 9-90 80-152 (1010)
59 2oca_A DAR protein, ATP-depend 99.0 6.1E-10 2.1E-14 121.4 10.8 70 13-90 111-180 (510)
60 2fz4_A DNA repair protein RAD2 99.0 1.2E-09 4.1E-14 106.1 11.4 68 10-89 88-155 (237)
61 2zj8_A DNA helicase, putative 99.0 4.1E-10 1.4E-14 127.9 9.1 73 12-90 19-91 (720)
62 2fwr_A DNA repair protein RAD2 99.0 9.3E-10 3.2E-14 118.6 9.9 68 10-89 88-155 (472)
63 2xau_A PRE-mRNA-splicing facto 98.9 3.6E-08 1.2E-12 111.8 20.8 104 515-624 285-397 (773)
64 3h1t_A Type I site-specific re 98.9 2.2E-09 7.5E-14 119.1 9.8 67 17-84 179-252 (590)
65 3jux_A Protein translocase sub 98.8 5.2E-07 1.8E-11 98.2 25.1 154 441-625 399-559 (822)
66 4f92_B U5 small nuclear ribonu 98.8 6.1E-09 2.1E-13 126.9 10.8 75 12-90 74-157 (1724)
67 1z63_A Helicase of the SNF2/RA 98.8 2.3E-08 7.7E-13 108.6 12.7 71 17-90 38-108 (500)
68 2w00_A HSDR, R.ECOR124I; ATP-b 98.8 1.6E-08 5.4E-13 117.2 11.1 72 17-90 272-353 (1038)
69 3dmq_A RNA polymerase-associat 98.6 6.7E-08 2.3E-12 112.6 8.7 82 530-626 501-586 (968)
70 2ipc_A Preprotein translocase 98.6 1.3E-07 4.3E-12 104.8 10.0 70 12-92 76-145 (997)
71 3llm_A ATP-dependent RNA helic 98.5 1.8E-07 6E-12 90.7 9.4 69 17-89 62-131 (235)
72 3mwy_W Chromo domain-containin 98.5 2.3E-07 7.9E-12 106.2 11.4 73 16-90 236-308 (800)
73 1z3i_X Similar to RAD54-like; 98.4 1.4E-06 4.8E-11 97.1 12.6 73 17-91 56-137 (644)
74 4b3f_X DNA-binding protein smu 98.2 9.5E-06 3.3E-10 90.5 13.6 66 17-89 190-255 (646)
75 2z83_A Helicase/nucleoside tri 98.1 1.1E-06 3.7E-11 93.9 3.2 58 28-88 14-71 (459)
76 1yks_A Genome polyprotein [con 98.0 2E-06 6.8E-11 91.3 3.2 56 31-89 4-59 (440)
77 2jlq_A Serine protease subunit 98.0 1.2E-06 4.2E-11 93.4 1.4 68 14-88 2-69 (451)
78 2wv9_A Flavivirin protease NS2 98.0 7.3E-07 2.5E-11 99.2 -1.2 71 16-89 215-292 (673)
79 2v6i_A RNA helicase; membrane, 97.9 7.1E-06 2.4E-10 86.8 4.9 51 35-88 2-52 (431)
80 2gk6_A Regulator of nonsense t 97.8 0.00011 3.8E-09 81.4 13.6 66 17-89 181-246 (624)
81 2whx_A Serine protease/ntpase/ 97.8 9.7E-06 3.3E-10 89.5 4.1 65 17-88 172-236 (618)
82 2wjy_A Regulator of nonsense t 97.6 0.00038 1.3E-08 78.9 12.6 66 17-89 357-422 (800)
83 1fuk_A Eukaryotic initiation f 97.5 0.00035 1.2E-08 63.1 9.5 82 531-627 29-111 (165)
84 2p6n_A ATP-dependent RNA helic 97.5 0.00029 1E-08 65.3 8.4 89 523-626 45-134 (191)
85 2hjv_A ATP-dependent RNA helic 97.4 0.001 3.5E-08 59.8 11.4 81 531-626 34-115 (163)
86 2rb4_A ATP-dependent RNA helic 97.4 0.00061 2.1E-08 62.1 9.4 88 523-625 24-113 (175)
87 2jgn_A DBX, DDX3, ATP-dependen 97.2 0.00099 3.4E-08 61.4 8.6 79 532-625 46-125 (185)
88 1t5i_A C_terminal domain of A 97.2 0.00096 3.3E-08 60.6 8.1 80 531-625 30-110 (172)
89 3o8b_A HCV NS3 protease/helica 97.0 0.00029 9.9E-09 77.4 3.8 55 28-89 225-279 (666)
90 3rc3_A ATP-dependent RNA helic 97.0 0.00043 1.5E-08 76.8 5.1 69 11-89 124-201 (677)
91 3eaq_A Heat resistant RNA depe 97.0 0.0018 6E-08 61.1 8.4 81 531-626 30-111 (212)
92 3upu_A ATP-dependent DNA helic 97.0 0.0026 8.8E-08 67.7 10.5 70 12-84 21-91 (459)
93 2yjt_D ATP-dependent RNA helic 95.8 0.00021 7.3E-09 64.9 0.0 81 532-627 30-111 (170)
94 1w36_D RECD, exodeoxyribonucle 96.6 0.0031 1E-07 69.5 7.9 67 18-90 151-219 (608)
95 1fuu_A Yeast initiation factor 96.4 0.0011 3.7E-08 68.8 2.4 81 532-627 259-340 (394)
96 1c4o_A DNA nucleotide excision 96.2 0.011 3.7E-07 65.8 9.5 71 13-91 6-77 (664)
97 3i32_A Heat resistant RNA depe 96.2 0.024 8.4E-07 56.2 10.8 80 532-626 28-108 (300)
98 2xzl_A ATP-dependent helicase 96.0 0.012 4.1E-07 66.7 8.4 66 17-89 361-426 (802)
99 3fmp_B ATP-dependent RNA helic 96.0 0.0019 6.5E-08 69.1 1.6 80 532-625 333-412 (479)
100 3tbk_A RIG-I helicase domain; 95.7 0.017 5.8E-07 62.7 8.0 101 517-627 373-483 (555)
101 2d7d_A Uvrabc system protein B 95.6 0.03 1E-06 62.2 9.5 76 8-91 5-81 (661)
102 2z0m_A 337AA long hypothetical 95.6 0.014 4.7E-07 58.8 6.3 78 529-625 217-295 (337)
103 4gl2_A Interferon-induced heli 95.5 0.015 5E-07 65.4 6.3 98 520-626 386-494 (699)
104 4a2p_A RIG-I, retinoic acid in 95.3 0.027 9.1E-07 61.2 7.6 100 517-626 374-483 (556)
105 2zj8_A DNA helicase, putative 95.3 0.038 1.3E-06 62.2 9.0 77 531-613 236-339 (720)
106 3lfu_A DNA helicase II; SF1 he 95.2 0.031 1.1E-06 62.1 7.8 67 17-91 10-78 (647)
107 3h1t_A Type I site-specific re 95.0 0.11 3.6E-06 57.0 11.6 100 519-626 424-529 (590)
108 3e1s_A Exodeoxyribonuclease V, 94.9 0.05 1.7E-06 59.2 8.1 64 13-85 187-250 (574)
109 2xgj_A ATP-dependent RNA helic 94.8 0.081 2.8E-06 61.6 10.1 88 527-624 338-459 (1010)
110 2jlq_A Serine protease subunit 94.8 0.041 1.4E-06 58.2 7.0 73 531-622 187-259 (451)
111 2z83_A Helicase/nucleoside tri 94.7 0.012 4.3E-07 62.3 2.8 73 531-622 189-261 (459)
112 2w58_A DNAI, primosome compone 94.7 0.068 2.3E-06 49.4 7.6 52 19-74 32-89 (202)
113 1z5z_A Helicase of the SNF2/RA 94.7 0.21 7.3E-06 48.6 11.3 96 518-628 99-197 (271)
114 2d7d_A Uvrabc system protein B 94.6 0.1 3.5E-06 57.8 10.0 91 518-624 432-523 (661)
115 2oca_A DAR protein, ATP-depend 94.6 0.2 6.9E-06 53.6 12.1 93 519-626 335-428 (510)
116 4a2q_A RIG-I, retinoic acid in 94.4 0.061 2.1E-06 61.3 7.8 100 517-626 615-724 (797)
117 2ykg_A Probable ATP-dependent 94.3 0.069 2.3E-06 59.8 7.8 99 518-626 383-491 (696)
118 4a2w_A RIG-I, retinoic acid in 94.3 0.097 3.3E-06 60.6 9.2 99 518-626 616-724 (936)
119 1c4o_A DNA nucleotide excision 94.2 0.13 4.3E-06 57.2 9.5 91 518-624 426-517 (664)
120 2whx_A Serine protease/ntpase/ 94.1 0.059 2E-06 59.2 6.6 76 531-625 354-429 (618)
121 2v6i_A RNA helicase; membrane, 94.1 0.14 4.7E-06 53.7 9.1 65 531-611 170-234 (431)
122 3ec2_A DNA replication protein 93.8 0.074 2.5E-06 48.1 5.7 33 18-50 16-53 (180)
123 2o0j_A Terminase, DNA packagin 93.7 0.24 8.1E-06 50.7 9.7 73 12-91 160-232 (385)
124 3n70_A Transport activator; si 93.5 0.11 3.7E-06 45.2 6.0 36 22-59 11-46 (145)
125 1uaa_A REP helicase, protein ( 93.4 0.11 3.9E-06 57.8 7.4 67 17-90 3-70 (673)
126 2qgz_A Helicase loader, putati 93.2 0.16 5.6E-06 50.5 7.5 52 20-75 132-189 (308)
127 3cpe_A Terminase, DNA packagin 93.2 0.27 9.2E-06 53.8 9.9 73 12-91 160-232 (592)
128 2fwr_A DNA repair protein RAD2 93.1 0.1 3.4E-06 55.4 6.2 77 531-626 348-424 (472)
129 2wv9_A Flavivirin protease NS2 93.0 0.13 4.4E-06 57.1 7.0 76 531-625 409-484 (673)
130 1pjr_A PCRA; DNA repair, DNA r 92.9 0.17 5.9E-06 56.8 8.0 66 17-90 12-79 (724)
131 1yks_A Genome polyprotein [con 92.9 0.13 4.5E-06 54.0 6.6 71 531-620 176-246 (440)
132 3co5_A Putative two-component 92.8 0.076 2.6E-06 46.1 3.9 28 23-50 15-42 (143)
133 2r44_A Uncharacterized protein 92.8 0.076 2.6E-06 53.4 4.3 40 18-59 29-68 (331)
134 1gm5_A RECG; helicase, replica 92.6 0.13 4.5E-06 57.9 6.4 93 519-624 566-667 (780)
135 1z63_A Helicase of the SNF2/RA 92.5 0.56 1.9E-05 49.9 11.1 96 518-627 328-425 (500)
136 3nbx_X ATPase RAVA; AAA+ ATPas 91.8 0.09 3.1E-06 56.0 3.6 40 18-59 24-63 (500)
137 1ofh_A ATP-dependent HSL prote 91.3 0.26 8.8E-06 48.7 6.3 33 19-51 18-66 (310)
138 3dmq_A RNA polymerase-associat 91.1 0.48 1.6E-05 55.0 9.0 71 13-89 151-221 (968)
139 2bjv_A PSP operon transcriptio 90.5 0.42 1.4E-05 46.1 6.8 38 19-58 13-50 (265)
140 3u4q_A ATP-dependent helicase/ 90.2 0.37 1.3E-05 57.5 7.1 65 17-89 11-79 (1232)
141 3rc3_A ATP-dependent RNA helic 90.1 0.74 2.5E-05 50.9 9.0 81 531-625 319-400 (677)
142 3hws_A ATP-dependent CLP prote 90.1 0.22 7.6E-06 50.7 4.5 38 20-59 19-73 (363)
143 1z3i_X Similar to RAD54-like; 89.8 1.2 4.1E-05 49.1 10.5 81 531-626 415-499 (644)
144 3bos_A Putative DNA replicatio 89.6 0.41 1.4E-05 45.1 5.8 52 20-75 35-88 (242)
145 1a5t_A Delta prime, HOLB; zinc 89.6 0.36 1.2E-05 48.5 5.6 37 17-53 3-42 (334)
146 3te6_A Regulatory protein SIR3 89.5 0.24 8.1E-06 49.3 4.0 36 18-53 25-63 (318)
147 4fcw_A Chaperone protein CLPB; 88.9 0.32 1.1E-05 48.1 4.6 34 19-52 20-64 (311)
148 2p65_A Hypothetical protein PF 88.7 0.35 1.2E-05 43.3 4.4 33 19-51 25-59 (187)
149 1jbk_A CLPB protein; beta barr 88.5 0.33 1.1E-05 43.7 4.0 34 19-52 25-60 (195)
150 2b8t_A Thymidine kinase; deoxy 88.4 0.43 1.5E-05 44.8 4.8 41 33-77 10-50 (223)
151 3h4m_A Proteasome-activating n 88.3 0.45 1.5E-05 46.4 5.1 22 35-58 51-72 (285)
152 1njg_A DNA polymerase III subu 87.9 0.32 1.1E-05 45.7 3.6 31 20-50 27-60 (250)
153 1l8q_A Chromosomal replication 87.5 1.2 4.2E-05 44.2 7.9 63 10-76 6-74 (324)
154 3mwy_W Chromo domain-containin 87.3 1.9 6.5E-05 48.9 10.1 94 520-626 561-655 (800)
155 2chg_A Replication factor C sm 87.2 0.4 1.4E-05 44.3 3.8 32 20-51 21-54 (226)
156 3pfi_A Holliday junction ATP-d 86.8 0.67 2.3E-05 46.4 5.5 33 19-51 32-71 (338)
157 1ojl_A Transcriptional regulat 86.8 0.79 2.7E-05 45.3 5.9 36 22-59 12-47 (304)
158 2gno_A DNA polymerase III, gam 86.6 2.1 7.1E-05 42.2 8.9 35 20-54 1-37 (305)
159 2qz4_A Paraplegin; AAA+, SPG7, 86.3 1.4 4.8E-05 42.0 7.3 33 18-50 11-54 (262)
160 1iqp_A RFCS; clamp loader, ext 86.2 0.52 1.8E-05 46.8 4.3 35 19-53 28-64 (327)
161 3vfd_A Spastin; ATPase, microt 85.0 0.88 3E-05 46.7 5.4 50 19-75 118-181 (389)
162 3b9p_A CG5977-PA, isoform A; A 85.0 0.55 1.9E-05 46.1 3.7 17 35-51 54-70 (297)
163 1um8_A ATP-dependent CLP prote 84.9 1.1 3.9E-05 45.6 6.2 17 35-51 72-88 (376)
164 1sxj_C Activator 1 40 kDa subu 84.9 0.71 2.4E-05 46.4 4.5 35 20-54 29-65 (340)
165 3d8b_A Fidgetin-like protein 1 84.8 1 3.5E-05 45.6 5.7 22 35-58 117-138 (357)
166 1lv7_A FTSH; alpha/beta domain 84.6 1.7 5.9E-05 41.4 7.0 22 36-59 46-67 (257)
167 3t15_A Ribulose bisphosphate c 84.2 1.2 4.2E-05 43.6 5.8 24 36-61 37-60 (293)
168 3eie_A Vacuolar protein sortin 84.0 1.1 3.8E-05 44.6 5.5 39 18-58 20-72 (322)
169 3pvs_A Replication-associated 83.9 1.8 6.1E-05 45.3 7.2 34 18-51 28-66 (447)
170 3u61_B DNA polymerase accessor 83.7 2.8 9.5E-05 41.5 8.3 53 19-78 29-84 (324)
171 1sxj_D Activator 1 41 kDa subu 83.7 0.4 1.4E-05 48.3 2.0 34 19-52 40-75 (353)
172 1hqc_A RUVB; extended AAA-ATPa 83.7 1.2 4E-05 44.2 5.5 32 20-51 16-54 (324)
173 3pxi_A Negative regulator of g 83.7 1.2 4E-05 50.3 6.1 41 19-61 494-545 (758)
174 3syl_A Protein CBBX; photosynt 83.6 1.7 5.6E-05 42.8 6.5 17 36-52 68-84 (309)
175 2qby_B CDC6 homolog 3, cell di 83.5 2.4 8.3E-05 43.0 8.0 17 36-52 46-62 (384)
176 3cf0_A Transitional endoplasmi 83.4 0.78 2.7E-05 45.3 4.0 22 35-58 49-70 (301)
177 2c9o_A RUVB-like 1; hexameric 83.4 1.2 4.3E-05 46.7 5.8 38 21-60 45-86 (456)
178 2zts_A Putative uncharacterize 83.2 0.75 2.6E-05 43.6 3.7 50 32-85 27-76 (251)
179 1g8p_A Magnesium-chelatase 38 83.1 0.47 1.6E-05 47.7 2.3 38 12-50 21-60 (350)
180 3uk6_A RUVB-like 2; hexameric 83.0 1.3 4.4E-05 44.8 5.6 35 19-53 50-88 (368)
181 3pxg_A Negative regulator of g 82.5 0.84 2.9E-05 48.2 4.0 34 19-52 183-218 (468)
182 4b4t_M 26S protease regulatory 82.4 1.3 4.3E-05 46.0 5.2 33 36-75 216-248 (434)
183 1g41_A Heat shock protein HSLU 82.3 1.5 5E-05 45.7 5.6 37 20-58 19-71 (444)
184 1fnn_A CDC6P, cell division co 82.2 3.5 0.00012 41.8 8.6 16 37-52 46-61 (389)
185 4b4t_K 26S protease regulatory 82.1 1.3 4.4E-05 45.9 5.1 34 36-76 207-240 (428)
186 3k1j_A LON protease, ATP-depen 82.1 1.3 4.3E-05 48.5 5.3 33 19-51 44-76 (604)
187 4b4t_L 26S protease subunit RP 81.9 1.3 4.6E-05 45.9 5.2 33 36-75 216-248 (437)
188 2qp9_X Vacuolar protein sortin 81.8 1.4 4.7E-05 44.7 5.1 21 36-58 85-105 (355)
189 4b4t_J 26S protease regulatory 81.5 1.5 5.2E-05 44.8 5.3 33 36-75 183-215 (405)
190 1jr3_A DNA polymerase III subu 80.5 1.3 4.3E-05 44.9 4.4 34 19-52 19-55 (373)
191 1in4_A RUVB, holliday junction 80.3 1.1 3.8E-05 44.9 3.9 31 20-50 29-66 (334)
192 2r62_A Cell division protease 80.2 0.95 3.3E-05 43.6 3.2 21 36-58 45-65 (268)
193 1xx6_A Thymidine kinase; NESG, 80.1 1.8 6.1E-05 39.5 4.8 39 34-76 7-45 (191)
194 1xwi_A SKD1 protein; VPS4B, AA 79.8 1.2 4.2E-05 44.3 4.0 21 36-58 46-66 (322)
195 2chq_A Replication factor C sm 79.6 0.88 3E-05 44.9 2.8 34 20-53 21-56 (319)
196 4akg_A Glutathione S-transfera 79.5 3.3 0.00011 52.8 8.3 57 3-61 605-669 (2695)
197 3o8b_A HCV NS3 protease/helica 79.3 2.9 0.0001 45.8 7.0 70 531-622 395-464 (666)
198 1sxj_A Activator 1 95 kDa subu 78.5 2.6 8.8E-05 45.0 6.2 34 36-76 78-111 (516)
199 2v1u_A Cell division control p 78.4 1.8 6.3E-05 43.8 4.9 34 19-52 22-61 (387)
200 2orw_A Thymidine kinase; TMTK, 77.7 2.8 9.7E-05 37.8 5.4 39 35-77 3-41 (184)
201 2dr3_A UPF0273 protein PH0284; 77.7 2.8 9.5E-05 39.4 5.7 49 32-85 20-68 (247)
202 4b4t_H 26S protease regulatory 77.6 2.1 7.1E-05 44.6 4.9 23 36-60 244-266 (467)
203 4b4t_I 26S protease regulatory 77.1 2.4 8.2E-05 43.7 5.2 41 18-60 187-239 (437)
204 1d2n_A N-ethylmaleimide-sensit 77.1 2.4 8.3E-05 40.8 5.1 16 36-51 65-80 (272)
205 3bh0_A DNAB-like replicative h 77.1 1.9 6.5E-05 42.7 4.4 53 28-85 61-113 (315)
206 1r6b_X CLPA protein; AAA+, N-t 76.9 1.2 4.2E-05 50.1 3.3 33 20-52 462-505 (758)
207 2gza_A Type IV secretion syste 76.9 2.1 7.3E-05 43.3 4.8 31 25-57 165-195 (361)
208 2kjq_A DNAA-related protein; s 76.8 2.6 8.9E-05 36.5 4.7 38 34-75 35-72 (149)
209 3pxi_A Negative regulator of g 76.6 1.6 5.3E-05 49.3 4.0 34 19-52 183-218 (758)
210 2zan_A Vacuolar protein sortin 76.6 1.7 5.7E-05 45.5 4.0 38 19-58 137-188 (444)
211 2z4s_A Chromosomal replication 76.3 6.3 0.00022 41.0 8.3 37 36-76 131-169 (440)
212 1u0j_A DNA replication protein 76.2 2.6 9E-05 40.4 4.9 21 37-59 106-126 (267)
213 1tue_A Replication protein E1; 75.8 1.6 5.5E-05 40.2 3.1 18 36-53 59-76 (212)
214 1p9r_A General secretion pathw 75.1 3.5 0.00012 42.6 5.8 31 18-50 152-182 (418)
215 1qvr_A CLPB protein; coiled co 74.6 1.8 6.3E-05 49.4 3.9 39 20-60 562-611 (854)
216 2q6t_A DNAB replication FORK h 74.4 2.1 7.2E-05 44.7 4.1 55 27-85 192-246 (444)
217 3bgw_A DNAB-like replicative h 74.4 2.2 7.6E-05 44.5 4.2 43 30-76 192-234 (444)
218 3hu3_A Transitional endoplasmi 74.2 4.5 0.00015 42.8 6.5 21 36-58 239-259 (489)
219 3vkw_A Replicase large subunit 74.1 2 6.9E-05 44.5 3.7 44 36-88 162-205 (446)
220 2r6a_A DNAB helicase, replicat 74.0 2.3 8E-05 44.5 4.3 55 27-85 195-249 (454)
221 2oap_1 GSPE-2, type II secreti 73.8 2.1 7.4E-05 45.5 3.9 28 23-50 248-275 (511)
222 2qen_A Walker-type ATPase; unk 73.7 1.9 6.5E-05 43.0 3.4 30 18-50 17-46 (350)
223 3f9v_A Minichromosome maintena 73.7 1 3.4E-05 49.2 1.4 31 20-50 299-342 (595)
224 1ixz_A ATP-dependent metallopr 73.3 4.3 0.00015 38.5 5.7 39 18-58 21-70 (254)
225 4a1f_A DNAB helicase, replicat 73.3 2.7 9.2E-05 42.0 4.3 46 27-76 38-83 (338)
226 1sxj_B Activator 1 37 kDa subu 73.2 2.4 8.2E-05 41.7 4.0 33 20-52 25-59 (323)
227 2ce7_A Cell division protein F 72.8 6.8 0.00023 41.2 7.4 39 19-59 22-71 (476)
228 1e9r_A Conjugal transfer prote 71.3 3.6 0.00012 42.7 5.0 39 35-79 53-93 (437)
229 3hjh_A Transcription-repair-co 71.1 6 0.00021 41.6 6.6 50 34-90 13-62 (483)
230 1q57_A DNA primase/helicase; d 70.9 2.1 7.3E-05 45.5 3.1 52 30-85 237-288 (503)
231 2zpa_A Uncharacterized protein 70.4 2.4 8.3E-05 46.3 3.4 60 17-85 176-235 (671)
232 1iy2_A ATP-dependent metallopr 70.0 5.7 0.00019 38.3 5.8 39 19-59 46-95 (278)
233 2r2a_A Uncharacterized protein 69.7 3.3 0.00011 37.9 3.7 18 37-54 7-24 (199)
234 2qby_A CDC6 homolog 1, cell di 69.3 5.4 0.00019 40.1 5.7 33 20-52 24-62 (386)
235 1cr0_A DNA primase/helicase; R 68.8 3.6 0.00012 40.1 4.1 48 25-75 25-72 (296)
236 2pt7_A CAG-ALFA; ATPase, prote 68.7 3.3 0.00011 41.3 3.8 27 24-50 160-186 (330)
237 2z43_A DNA repair and recombin 68.6 5.4 0.00019 39.5 5.4 24 33-56 105-128 (324)
238 2cvh_A DNA repair and recombin 68.0 2.7 9.3E-05 38.7 2.8 22 32-53 17-38 (220)
239 2ius_A DNA translocase FTSK; n 67.9 6.1 0.00021 41.8 5.8 44 34-77 166-209 (512)
240 2j9r_A Thymidine kinase; TK1, 67.4 5.6 0.00019 36.7 4.7 39 35-77 28-66 (214)
241 3b85_A Phosphate starvation-in 67.1 6.5 0.00022 36.2 5.2 33 14-50 5-37 (208)
242 1sxj_E Activator 1 40 kDa subu 67.1 3 0.0001 41.8 3.2 33 20-52 18-53 (354)
243 1g5t_A COB(I)alamin adenosyltr 67.0 6.6 0.00023 35.7 5.1 43 28-74 21-63 (196)
244 2eyu_A Twitching motility prot 66.5 2.8 9.4E-05 40.3 2.6 29 25-55 17-46 (261)
245 2w0m_A SSO2452; RECA, SSPF, un 66.4 4.8 0.00016 37.2 4.3 21 31-51 19-39 (235)
246 1nlf_A Regulatory protein REPA 65.9 7.9 0.00027 37.3 5.8 24 32-55 27-50 (279)
247 2dhr_A FTSH; AAA+ protein, hex 64.9 7.4 0.00025 41.1 5.7 40 18-59 36-86 (499)
248 2bwj_A Adenylate kinase 5; pho 64.7 2.7 9.2E-05 38.0 2.1 22 29-50 6-27 (199)
249 2r8r_A Sensor protein; KDPD, P 64.0 7.8 0.00027 36.1 5.0 37 37-77 8-45 (228)
250 4akg_A Glutathione S-transfera 63.7 13 0.00043 47.7 8.3 37 18-54 906-942 (2695)
251 2v9p_A Replication protein E1; 63.2 2.3 8E-05 41.8 1.4 33 24-56 115-148 (305)
252 2fna_A Conserved hypothetical 62.6 1.8 6.3E-05 43.2 0.5 28 18-50 18-45 (357)
253 2qor_A Guanylate kinase; phosp 62.0 2.5 8.5E-05 38.7 1.3 20 31-50 8-27 (204)
254 2iut_A DNA translocase FTSK; n 61.6 9.5 0.00033 40.8 5.8 43 35-77 214-256 (574)
255 1u94_A RECA protein, recombina 61.5 6.7 0.00023 39.5 4.5 42 34-79 62-103 (356)
256 1r6b_X CLPA protein; AAA+, N-t 61.3 5.5 0.00019 44.7 4.2 34 19-52 189-224 (758)
257 1w36_B RECB, exodeoxyribonucle 61.2 12 0.00041 44.3 7.2 50 36-85 17-74 (1180)
258 1w5s_A Origin recognition comp 61.0 4.9 0.00017 41.1 3.5 34 18-51 27-68 (412)
259 1kgd_A CASK, peripheral plasma 60.9 3.4 0.00012 36.9 2.0 17 34-50 4-20 (180)
260 2x8a_A Nuclear valosin-contain 60.5 4.6 0.00016 39.0 3.0 21 37-59 46-66 (274)
261 3tr0_A Guanylate kinase, GMP k 59.5 3.4 0.00012 37.5 1.7 19 32-50 4-22 (205)
262 3tau_A Guanylate kinase, GMP k 59.2 3.7 0.00013 37.7 2.0 17 34-50 7-23 (208)
263 3vkg_A Dynein heavy chain, cyt 58.9 24 0.0008 45.9 9.5 57 3-61 564-628 (3245)
264 1ry6_A Internal kinesin; kines 58.9 7.7 0.00026 39.0 4.3 36 18-53 61-103 (360)
265 1n0w_A DNA repair protein RAD5 58.8 8.2 0.00028 35.9 4.4 23 32-54 21-43 (243)
266 1w4r_A Thymidine kinase; type 58.7 9.7 0.00033 34.5 4.5 38 35-76 20-57 (195)
267 2px0_A Flagellar biosynthesis 58.6 11 0.00036 36.9 5.2 37 35-74 105-141 (296)
268 2i1q_A DNA repair and recombin 58.3 7.4 0.00025 38.4 4.1 23 35-57 98-120 (322)
269 3ney_A 55 kDa erythrocyte memb 58.3 4 0.00014 37.2 2.0 17 34-50 18-34 (197)
270 2w00_A HSDR, R.ECOR124I; ATP-b 58.2 32 0.0011 39.9 9.8 32 589-625 646-677 (1038)
271 3exa_A TRNA delta(2)-isopenten 57.9 5 0.00017 39.5 2.6 15 36-50 4-18 (322)
272 3jvv_A Twitching mobility prot 57.9 6.8 0.00023 39.4 3.7 18 33-50 121-138 (356)
273 3nwj_A ATSK2; P loop, shikimat 57.8 4.4 0.00015 38.6 2.2 29 22-50 32-63 (250)
274 1qvr_A CLPB protein; coiled co 57.7 6.2 0.00021 45.0 3.8 34 19-52 173-208 (854)
275 3vaa_A Shikimate kinase, SK; s 57.5 4.2 0.00014 37.0 2.0 20 31-50 21-40 (199)
276 3lw7_A Adenylate kinase relate 57.4 4 0.00014 35.7 1.8 19 37-57 3-21 (179)
277 2c95_A Adenylate kinase 1; tra 57.4 5.2 0.00018 35.9 2.6 19 32-50 6-24 (196)
278 2j41_A Guanylate kinase; GMP, 57.4 3.9 0.00013 37.2 1.8 19 32-50 3-21 (207)
279 1kht_A Adenylate kinase; phosp 56.8 4.3 0.00015 36.2 1.9 16 35-50 3-18 (192)
280 2zr9_A Protein RECA, recombina 56.8 7.9 0.00027 38.8 4.0 42 33-78 59-100 (349)
281 3a8t_A Adenylate isopentenyltr 56.6 5.4 0.00019 39.7 2.7 15 36-50 41-55 (339)
282 1svm_A Large T antigen; AAA+ f 56.5 6.9 0.00023 39.7 3.5 20 31-50 165-184 (377)
283 2r2a_A Uncharacterized protein 55.8 3.4 0.00012 37.8 1.0 14 227-240 87-100 (199)
284 1ny5_A Transcriptional regulat 55.4 17 0.00057 37.0 6.3 20 33-52 158-177 (387)
285 3tlx_A Adenylate kinase 2; str 55.4 5.8 0.0002 37.4 2.7 16 35-50 29-44 (243)
286 3ice_A Transcription terminati 55.1 11 0.00037 38.4 4.5 49 3-51 134-190 (422)
287 3io5_A Recombination and repai 55.1 15 0.00053 36.1 5.6 42 37-80 30-71 (333)
288 1v5w_A DMC1, meiotic recombina 55.0 12 0.0004 37.4 5.0 43 34-77 121-166 (343)
289 2v54_A DTMP kinase, thymidylat 54.6 3.8 0.00013 37.2 1.2 17 34-50 3-19 (204)
290 3hr8_A Protein RECA; alpha and 54.5 14 0.00047 37.2 5.3 42 34-79 60-101 (356)
291 1f2t_A RAD50 ABC-ATPase; DNA d 54.4 7.9 0.00027 33.3 3.1 25 36-62 24-48 (149)
292 2l8b_A Protein TRAI, DNA helic 54.4 28 0.00095 31.1 6.6 71 10-84 26-97 (189)
293 1xp8_A RECA protein, recombina 54.3 10 0.00034 38.4 4.3 41 34-78 73-113 (366)
294 3kb2_A SPBC2 prophage-derived 53.9 5.1 0.00017 35.0 1.9 14 37-50 3-16 (173)
295 3trf_A Shikimate kinase, SK; a 53.9 5.3 0.00018 35.6 2.0 16 35-50 5-20 (185)
296 1ypw_A Transitional endoplasmi 53.7 6 0.00021 44.7 2.8 22 35-58 238-259 (806)
297 1lvg_A Guanylate kinase, GMP k 53.0 5.5 0.00019 36.2 2.0 17 34-50 3-19 (198)
298 3iij_A Coilin-interacting nucl 53.0 8.8 0.0003 33.9 3.3 17 34-50 10-26 (180)
299 2ehv_A Hypothetical protein PH 52.9 8.1 0.00028 36.1 3.3 22 31-52 26-47 (251)
300 1zd8_A GTP:AMP phosphotransfer 52.9 5 0.00017 37.3 1.7 18 33-50 5-22 (227)
301 3cm0_A Adenylate kinase; ATP-b 52.7 4.2 0.00014 36.3 1.1 17 34-50 3-19 (186)
302 1zak_A Adenylate kinase; ATP:A 52.6 5.1 0.00017 37.0 1.7 17 34-50 4-20 (222)
303 2qmh_A HPR kinase/phosphorylas 52.0 6.3 0.00022 36.0 2.1 15 36-50 35-49 (205)
304 3foz_A TRNA delta(2)-isopenten 51.7 8 0.00027 38.0 2.9 14 37-50 12-25 (316)
305 1ex7_A Guanylate kinase; subst 51.6 6.1 0.00021 35.7 2.0 15 36-50 2-16 (186)
306 3u4q_B ATP-dependent helicase/ 51.5 12 0.00041 44.3 5.1 40 38-78 4-43 (1166)
307 3cf2_A TER ATPase, transitiona 50.6 7.8 0.00027 43.5 3.0 21 36-58 239-259 (806)
308 4edh_A DTMP kinase, thymidylat 50.6 29 0.00099 31.8 6.6 17 34-50 5-21 (213)
309 4ag6_A VIRB4 ATPase, type IV s 50.5 15 0.0005 37.4 5.0 41 34-78 34-74 (392)
310 2ewv_A Twitching motility prot 49.9 8.1 0.00028 39.2 2.8 19 32-50 133-151 (372)
311 3dm5_A SRP54, signal recogniti 49.5 27 0.00093 36.1 6.7 37 36-76 101-138 (443)
312 3tqc_A Pantothenate kinase; bi 49.3 35 0.0012 33.6 7.2 30 21-50 72-107 (321)
313 1z6g_A Guanylate kinase; struc 49.2 7.1 0.00024 36.1 2.1 24 27-50 15-38 (218)
314 1ly1_A Polynucleotide kinase; 49.1 6.3 0.00022 34.7 1.7 14 37-50 4-17 (181)
315 3lv8_A DTMP kinase, thymidylat 49.0 12 0.0004 35.2 3.6 17 34-50 26-42 (236)
316 3e2i_A Thymidine kinase; Zn-bi 48.8 17 0.0006 33.4 4.6 41 33-77 26-66 (219)
317 2vhj_A Ntpase P4, P4; non- hyd 48.7 9.8 0.00034 37.6 3.1 20 34-53 122-141 (331)
318 1f9v_A Kinesin-like protein KA 48.6 13 0.00044 37.2 4.0 36 18-53 63-103 (347)
319 2plr_A DTMP kinase, probable t 48.4 6 0.00021 36.0 1.5 16 35-50 4-19 (213)
320 3auy_A DNA double-strand break 48.3 8.7 0.0003 38.8 2.8 26 36-63 26-51 (371)
321 2jaq_A Deoxyguanosine kinase; 48.1 6.6 0.00022 35.4 1.7 14 37-50 2-15 (205)
322 3m6a_A ATP-dependent protease 48.1 9.7 0.00033 40.8 3.2 16 35-50 108-123 (543)
323 3cf2_A TER ATPase, transitiona 48.0 8.3 0.00028 43.3 2.7 22 36-59 512-533 (806)
324 3kta_A Chromosome segregation 47.9 11 0.00039 33.2 3.2 24 36-61 27-50 (182)
325 1nks_A Adenylate kinase; therm 47.7 6.3 0.00021 35.2 1.4 14 37-50 3-16 (194)
326 1m7g_A Adenylylsulfate kinase; 47.6 7.9 0.00027 35.4 2.2 19 32-50 22-40 (211)
327 1kag_A SKI, shikimate kinase I 47.1 8.1 0.00028 33.8 2.1 16 35-50 4-19 (173)
328 1nn5_A Similar to deoxythymidy 47.0 6.7 0.00023 35.8 1.6 18 33-50 7-24 (215)
329 2rhm_A Putative kinase; P-loop 46.9 6.2 0.00021 35.3 1.3 16 35-50 5-20 (193)
330 2wwf_A Thymidilate kinase, put 46.8 7.3 0.00025 35.4 1.8 17 34-50 9-25 (212)
331 3vkg_A Dynein heavy chain, cyt 46.4 17 0.0006 47.0 5.5 41 13-54 885-925 (3245)
332 3cmu_A Protein RECA, recombina 46.3 13 0.00043 46.1 4.1 41 34-78 1426-1466(2050)
333 3kl4_A SRP54, signal recogniti 46.3 16 0.00054 37.8 4.3 36 37-76 99-135 (433)
334 4tmk_A Protein (thymidylate ki 46.2 32 0.0011 31.5 6.1 16 35-50 3-18 (213)
335 3qks_A DNA double-strand break 46.0 12 0.00042 34.1 3.1 26 36-63 24-49 (203)
336 1aky_A Adenylate kinase; ATP:A 46.0 8.1 0.00028 35.6 2.0 16 35-50 4-19 (220)
337 3v9p_A DTMP kinase, thymidylat 46.0 6.6 0.00022 36.7 1.3 18 33-50 23-40 (227)
338 1tev_A UMP-CMP kinase; ploop, 45.8 7 0.00024 34.9 1.4 16 35-50 3-18 (196)
339 1qhx_A CPT, protein (chloramph 45.6 8.4 0.00029 33.9 2.0 16 35-50 3-18 (178)
340 4eaq_A DTMP kinase, thymidylat 45.6 30 0.001 32.1 5.9 17 34-50 25-41 (229)
341 2z0h_A DTMP kinase, thymidylat 45.5 7.9 0.00027 34.7 1.8 14 37-50 2-15 (197)
342 3c8u_A Fructokinase; YP_612366 45.4 6 0.00021 36.2 0.9 33 23-55 6-43 (208)
343 2rep_A Kinesin-like protein KI 45.0 15 0.00051 37.1 3.9 36 18-53 94-134 (376)
344 1s96_A Guanylate kinase, GMP k 44.6 8.8 0.0003 35.6 2.0 20 31-50 12-31 (219)
345 3t0q_A AGR253WP; kinesin, alph 44.5 15 0.0005 36.8 3.7 36 18-53 64-104 (349)
346 3a00_A Guanylate kinase, GMP k 44.5 9.5 0.00032 34.1 2.1 15 36-50 2-16 (186)
347 3tmk_A Thymidylate kinase; pho 44.5 8.3 0.00029 35.7 1.7 17 34-50 4-20 (216)
348 2orv_A Thymidine kinase; TP4A 44.4 23 0.00078 33.1 4.7 40 34-77 18-57 (234)
349 1zp6_A Hypothetical protein AT 44.2 5.5 0.00019 35.7 0.4 19 32-50 6-24 (191)
350 4etp_A Kinesin-like protein KA 44.2 15 0.00053 37.5 3.8 36 18-53 119-159 (403)
351 4gp7_A Metallophosphoesterase; 43.8 5.6 0.00019 35.1 0.4 18 33-50 7-24 (171)
352 4eun_A Thermoresistant glucoki 43.6 9.4 0.00032 34.6 2.0 18 33-50 27-44 (200)
353 1y63_A LMAJ004144AAA protein; 43.6 9.7 0.00033 33.9 2.0 16 35-50 10-25 (184)
354 1zuh_A Shikimate kinase; alpha 43.5 9.2 0.00032 33.3 1.8 15 36-50 8-22 (168)
355 1rz3_A Hypothetical protein rb 43.3 15 0.0005 33.3 3.3 27 24-50 6-37 (201)
356 2cdn_A Adenylate kinase; phosp 43.0 9.7 0.00033 34.4 2.0 15 36-50 21-35 (201)
357 3lnc_A Guanylate kinase, GMP k 43.0 8.7 0.0003 35.7 1.6 19 32-50 24-42 (231)
358 1htw_A HI0065; nucleotide-bind 42.8 13 0.00045 32.3 2.7 37 33-74 31-67 (158)
359 1bg2_A Kinesin; motor protein, 42.8 26 0.00089 34.6 5.1 36 18-53 55-96 (325)
360 1ak2_A Adenylate kinase isoenz 42.6 9.9 0.00034 35.4 2.0 15 36-50 17-31 (233)
361 1rj9_A FTSY, signal recognitio 42.3 28 0.00094 34.0 5.2 37 35-75 102-138 (304)
362 3p32_A Probable GTPase RV1496/ 42.2 48 0.0017 33.0 7.2 52 19-74 59-114 (355)
363 2pez_A Bifunctional 3'-phospho 42.1 8.8 0.0003 33.9 1.5 17 34-50 4-20 (179)
364 2ze6_A Isopentenyl transferase 42.1 14 0.00046 35.1 2.9 14 37-50 3-16 (253)
365 2vp4_A Deoxynucleoside kinase; 42.1 8.6 0.0003 35.8 1.5 16 35-50 20-35 (230)
366 3eph_A TRNA isopentenyltransfe 42.0 11 0.00039 38.4 2.4 14 37-50 4-17 (409)
367 3crm_A TRNA delta(2)-isopenten 41.9 13 0.00046 36.6 2.9 14 37-50 7-20 (323)
368 3fb4_A Adenylate kinase; psych 41.7 9.6 0.00033 34.9 1.7 14 37-50 2-15 (216)
369 2yvu_A Probable adenylyl-sulfa 41.6 8.9 0.00031 34.1 1.5 16 35-50 13-28 (186)
370 2pbr_A DTMP kinase, thymidylat 41.6 9.7 0.00033 33.9 1.7 14 37-50 2-15 (195)
371 1tf7_A KAIC; homohexamer, hexa 41.4 27 0.00094 37.0 5.5 50 31-85 277-326 (525)
372 3umf_A Adenylate kinase; rossm 41.4 11 0.00038 34.9 2.1 22 33-54 27-49 (217)
373 1ukz_A Uridylate kinase; trans 41.4 9.8 0.00034 34.4 1.7 15 36-50 16-30 (203)
374 3dc4_A Kinesin-like protein NO 41.3 28 0.00095 34.7 5.1 48 5-52 58-112 (344)
375 3dl0_A Adenylate kinase; phosp 41.3 9.8 0.00033 34.8 1.7 14 37-50 2-15 (216)
376 1znw_A Guanylate kinase, GMP k 41.2 11 0.00037 34.4 2.0 20 31-50 16-35 (207)
377 1e6c_A Shikimate kinase; phosp 41.2 11 0.00038 32.9 2.0 15 36-50 3-17 (173)
378 3a4m_A L-seryl-tRNA(SEC) kinas 40.7 9.2 0.00032 36.4 1.5 16 35-50 4-19 (260)
379 3be4_A Adenylate kinase; malar 40.6 11 0.00038 34.6 2.0 15 36-50 6-20 (217)
380 2xb4_A Adenylate kinase; ATP-b 40.6 10 0.00034 35.1 1.7 14 37-50 2-15 (223)
381 1odf_A YGR205W, hypothetical 3 40.5 25 0.00086 34.0 4.6 18 37-54 33-51 (290)
382 1qf9_A UMP/CMP kinase, protein 40.4 9.6 0.00033 33.9 1.5 15 36-50 7-21 (194)
383 1vma_A Cell division protein F 39.9 26 0.00088 34.3 4.6 15 36-50 105-119 (306)
384 2y65_A Kinesin, kinesin heavy 39.8 26 0.00087 35.3 4.6 48 5-53 48-103 (365)
385 1knq_A Gluconate kinase; ALFA/ 39.7 10 0.00035 33.3 1.5 16 35-50 8-23 (175)
386 3t61_A Gluconokinase; PSI-biol 39.7 12 0.0004 33.9 1.9 15 36-50 19-33 (202)
387 3d3q_A TRNA delta(2)-isopenten 39.6 11 0.00036 37.6 1.7 15 36-50 8-22 (340)
388 3f8t_A Predicted ATPase involv 39.6 18 0.00063 37.7 3.5 48 20-76 217-272 (506)
389 2vli_A Antibiotic resistance p 39.3 9.1 0.00031 33.8 1.1 16 35-50 5-20 (183)
390 1e4v_A Adenylate kinase; trans 39.2 10 0.00035 34.7 1.5 14 37-50 2-15 (214)
391 1p5z_B DCK, deoxycytidine kina 39.0 10 0.00035 36.1 1.5 16 35-50 24-39 (263)
392 3uie_A Adenylyl-sulfate kinase 38.8 14 0.00048 33.4 2.3 23 33-55 23-46 (200)
393 1gtv_A TMK, thymidylate kinase 38.8 6.6 0.00023 35.8 0.1 14 37-50 2-15 (214)
394 3sr0_A Adenylate kinase; phosp 38.7 16 0.00056 33.4 2.7 18 37-54 2-20 (206)
395 2pt5_A Shikimate kinase, SK; a 38.6 12 0.0004 32.6 1.7 14 37-50 2-15 (168)
396 3dzd_A Transcriptional regulat 38.5 29 0.00099 34.9 4.9 29 22-50 139-167 (368)
397 3bs4_A Uncharacterized protein 38.0 23 0.00079 33.7 3.7 48 35-88 21-69 (260)
398 3qf7_A RAD50; ABC-ATPase, ATPa 37.7 19 0.00064 36.3 3.3 25 37-63 25-49 (365)
399 2h58_A Kinesin-like protein KI 37.4 14 0.00047 36.7 2.1 36 18-53 59-99 (330)
400 3b9q_A Chloroplast SRP recepto 37.3 25 0.00086 34.3 4.0 37 36-76 101-137 (302)
401 3e70_C DPA, signal recognition 36.9 30 0.001 34.2 4.6 37 35-75 129-165 (328)
402 3nwn_A Kinesin-like protein KI 36.1 19 0.00065 36.1 2.9 34 20-53 84-123 (359)
403 1ypw_A Transitional endoplasmi 35.0 14 0.00047 41.8 1.9 25 35-61 511-535 (806)
404 2ocp_A DGK, deoxyguanosine kin 35.0 12 0.00041 35.0 1.2 15 36-50 3-17 (241)
405 3cmw_A Protein RECA, recombina 35.0 25 0.00085 42.9 4.2 41 32-76 31-71 (1706)
406 1gvn_B Zeta; postsegregational 34.9 21 0.0007 34.6 2.9 19 37-57 35-53 (287)
407 1vht_A Dephospho-COA kinase; s 34.4 13 0.00043 34.2 1.2 16 35-50 4-19 (218)
408 3gbj_A KIF13B protein; kinesin 34.4 27 0.00093 34.9 3.8 36 18-53 70-111 (354)
409 4a14_A Kinesin, kinesin-like p 34.4 27 0.00093 34.7 3.8 36 18-53 61-102 (344)
410 1sq5_A Pantothenate kinase; P- 34.3 61 0.0021 31.4 6.4 18 33-50 78-95 (308)
411 2eyq_A TRCF, transcription-rep 33.9 26 0.00088 41.3 4.0 80 531-623 811-891 (1151)
412 1x88_A Kinesin-like protein KI 33.7 21 0.00072 35.8 2.8 36 18-53 66-107 (359)
413 2bbw_A Adenylate kinase 4, AK4 33.5 25 0.00084 32.9 3.2 16 35-50 27-42 (246)
414 2zfi_A Kinesin-like protein KI 33.4 24 0.00081 35.5 3.2 35 19-53 68-108 (366)
415 1xjc_A MOBB protein homolog; s 33.1 43 0.0015 29.4 4.5 38 37-78 6-43 (169)
416 2v3c_C SRP54, signal recogniti 33.0 20 0.00069 37.0 2.7 14 37-50 101-114 (432)
417 2og2_A Putative signal recogni 32.8 32 0.0011 34.4 4.0 37 36-76 158-194 (359)
418 2cbz_A Multidrug resistance-as 32.8 13 0.00044 34.9 1.1 43 3-50 4-46 (237)
419 2wbe_C Bipolar kinesin KRP-130 32.6 26 0.00089 35.3 3.3 36 18-53 78-119 (373)
420 3b6u_A Kinesin-like protein KI 32.6 23 0.00079 35.7 2.9 36 18-53 79-120 (372)
421 2bdt_A BH3686; alpha-beta prot 32.5 14 0.00046 33.0 1.1 15 36-50 3-17 (189)
422 1zu4_A FTSY; GTPase, signal re 32.4 40 0.0014 33.1 4.6 34 37-74 107-140 (320)
423 3ld9_A DTMP kinase, thymidylat 32.2 16 0.00053 34.0 1.5 16 35-50 21-36 (223)
424 3asz_A Uridine kinase; cytidin 32.2 14 0.00049 33.4 1.3 17 34-50 5-21 (211)
425 1pzn_A RAD51, DNA repair and r 32.2 19 0.00065 36.0 2.2 21 34-54 130-150 (349)
426 3bfn_A Kinesin-like protein KI 32.0 23 0.0008 35.8 2.8 36 18-53 76-117 (388)
427 3lda_A DNA repair protein RAD5 32.0 35 0.0012 34.8 4.2 20 34-53 177-196 (400)
428 2nr8_A Kinesin-like protein KI 32.0 33 0.0011 34.3 3.9 35 19-53 82-122 (358)
429 2xxa_A Signal recognition part 31.9 36 0.0012 35.1 4.3 34 37-73 102-135 (433)
430 1goj_A Kinesin, kinesin heavy 31.4 27 0.00092 35.0 3.1 36 18-53 58-99 (355)
431 3tif_A Uncharacterized ABC tra 31.2 14 0.00049 34.5 1.1 65 3-74 2-66 (235)
432 1v8k_A Kinesin-like protein KI 31.2 25 0.00087 35.8 2.9 36 18-53 132-173 (410)
433 4a74_A DNA repair and recombin 31.0 16 0.00056 33.4 1.4 22 31-52 21-42 (231)
434 2qt1_A Nicotinamide riboside k 30.8 18 0.00063 32.7 1.7 16 35-50 21-36 (207)
435 1t5c_A CENP-E protein, centrom 30.7 22 0.00077 35.4 2.4 36 18-53 55-96 (349)
436 3lre_A Kinesin-like protein KI 30.5 24 0.00082 35.3 2.6 36 18-53 83-124 (355)
437 2owm_A Nckin3-434, related to 30.5 36 0.0012 35.1 4.0 36 18-53 114-155 (443)
438 1sgw_A Putative ABC transporte 30.4 15 0.00053 33.8 1.1 60 3-74 11-70 (214)
439 3u06_A Protein claret segregat 30.3 21 0.00071 36.6 2.1 36 18-53 117-157 (412)
440 3b5x_A Lipid A export ATP-bind 30.2 14 0.00047 40.0 0.9 63 3-74 342-404 (582)
441 4hlc_A DTMP kinase, thymidylat 30.1 91 0.0031 28.2 6.4 16 35-50 2-17 (205)
442 2pze_A Cystic fibrosis transme 30.1 15 0.00051 34.2 1.0 43 3-50 7-49 (229)
443 3qkt_A DNA double-strand break 30.1 27 0.00094 34.6 3.0 26 36-63 24-49 (339)
444 2iyv_A Shikimate kinase, SK; t 30.1 22 0.00076 31.3 2.1 15 36-50 3-17 (184)
445 2vvg_A Kinesin-2; motor protei 30.0 25 0.00086 35.1 2.6 36 18-53 67-108 (350)
446 3l0o_A Transcription terminati 29.7 36 0.0012 34.6 3.6 47 6-52 141-192 (427)
447 1cke_A CK, MSSA, protein (cyti 29.4 20 0.00069 32.8 1.8 20 35-54 5-25 (227)
448 2ff7_A Alpha-hemolysin translo 29.4 16 0.00054 34.6 1.0 63 2-73 7-69 (247)
449 3cob_A Kinesin heavy chain-lik 29.4 18 0.00062 36.4 1.5 36 18-53 58-98 (369)
450 2jeo_A Uridine-cytidine kinase 29.3 17 0.00059 34.0 1.3 28 23-50 13-40 (245)
451 1via_A Shikimate kinase; struc 29.0 23 0.00077 31.0 2.0 14 37-50 6-19 (175)
452 2yhs_A FTSY, cell division pro 28.8 30 0.001 36.2 3.1 34 36-73 294-327 (503)
453 2ghi_A Transport protein; mult 28.8 17 0.00057 34.7 1.1 63 2-73 17-79 (260)
454 2pcj_A ABC transporter, lipopr 28.8 15 0.00051 34.1 0.7 60 3-73 5-64 (224)
455 3tqf_A HPR(Ser) kinase; transf 28.4 26 0.00089 31.1 2.1 16 35-50 16-31 (181)
456 3aez_A Pantothenate kinase; tr 28.4 29 0.001 34.0 2.8 22 34-55 89-111 (312)
457 2heh_A KIF2C protein; kinesin, 28.1 31 0.0011 34.9 3.0 37 18-54 112-154 (387)
458 1ye8_A Protein THEP1, hypothet 28.0 22 0.00076 31.5 1.7 14 37-50 2-15 (178)
459 2i3b_A HCR-ntpase, human cance 27.7 39 0.0013 30.2 3.3 16 35-50 1-16 (189)
460 1mv5_A LMRA, multidrug resista 27.4 15 0.00052 34.5 0.5 61 3-73 2-62 (243)
461 3cio_A ETK, tyrosine-protein k 27.4 1.3E+02 0.0044 29.0 7.3 35 36-74 105-140 (299)
462 1vpl_A ABC transporter, ATP-bi 27.1 18 0.00063 34.3 1.0 60 3-73 16-75 (256)
463 1z6t_A APAF-1, apoptotic prote 27.1 34 0.0012 36.7 3.3 26 25-50 133-162 (591)
464 1g6h_A High-affinity branched- 27.0 18 0.00062 34.3 1.0 60 3-73 8-67 (257)
465 2ffh_A Protein (FFH); SRP54, s 27.0 65 0.0022 33.0 5.2 18 37-54 100-117 (425)
466 1tq4_A IIGP1, interferon-induc 27.0 41 0.0014 34.4 3.7 34 23-58 37-90 (413)
467 3cmu_A Protein RECA, recombina 26.9 36 0.0012 42.2 3.7 42 33-78 1079-1120(2050)
468 1e69_A Chromosome segregation 26.9 29 0.001 34.0 2.5 24 36-61 25-48 (322)
469 1ji0_A ABC transporter; ATP bi 26.9 18 0.00063 33.8 1.0 60 3-73 7-66 (240)
470 2d2e_A SUFC protein; ABC-ATPas 26.7 19 0.00064 34.1 1.0 41 3-50 4-44 (250)
471 2qi9_C Vitamin B12 import ATP- 26.7 19 0.00063 34.1 1.0 37 32-73 23-59 (249)
472 3cmw_A Protein RECA, recombina 26.5 42 0.0014 40.9 4.2 39 34-76 731-769 (1706)
473 3bfv_A CAPA1, CAPB2, membrane 26.2 1.6E+02 0.0054 27.8 7.6 34 36-73 83-117 (271)
474 2yz2_A Putative ABC transporte 26.1 20 0.00068 34.3 1.1 68 1-74 1-68 (266)
475 2nq2_C Hypothetical ABC transp 26.1 19 0.00066 34.1 1.0 42 3-50 5-46 (253)
476 1ihu_A Arsenical pump-driving 25.9 71 0.0024 34.3 5.6 36 35-74 8-43 (589)
477 2ixe_A Antigen peptide transpo 25.8 20 0.00069 34.3 1.1 64 3-74 17-80 (271)
478 2wsm_A Hydrogenase expression/ 25.7 1.4E+02 0.0046 26.8 6.9 41 18-60 11-53 (221)
479 2woo_A ATPase GET3; tail-ancho 25.7 1.1E+02 0.0037 30.0 6.5 36 36-75 20-55 (329)
480 4dzr_A Protein-(glutamine-N5) 25.5 69 0.0023 28.5 4.7 38 17-54 10-49 (215)
481 2zu0_C Probable ATP-dependent 25.5 30 0.001 33.0 2.2 41 3-50 21-61 (267)
482 3gfo_A Cobalt import ATP-bindi 25.4 20 0.00068 34.5 0.9 63 3-75 8-70 (275)
483 1byi_A Dethiobiotin synthase; 25.1 69 0.0024 29.0 4.7 33 37-73 4-36 (224)
484 1ls1_A Signal recognition part 24.9 68 0.0023 31.0 4.7 35 36-74 99-133 (295)
485 1b0u_A Histidine permease; ABC 24.7 22 0.00074 33.9 1.0 60 3-73 7-66 (262)
486 2if2_A Dephospho-COA kinase; a 24.6 25 0.00087 31.5 1.5 14 37-50 3-16 (204)
487 2qm8_A GTPase/ATPase; G protei 24.3 54 0.0019 32.4 3.9 40 33-76 53-92 (337)
488 1ltq_A Polynucleotide kinase; 24.2 27 0.00093 33.7 1.7 14 37-50 4-17 (301)
489 3of5_A Dethiobiotin synthetase 24.0 57 0.002 30.1 3.8 31 38-72 8-38 (228)
490 3nh6_A ATP-binding cassette SU 24.0 20 0.00068 35.1 0.6 62 3-74 54-115 (306)
491 2olj_A Amino acid ABC transpor 23.7 23 0.0008 33.7 1.0 60 3-73 25-84 (263)
492 2ihy_A ABC transporter, ATP-bi 23.6 23 0.00078 34.1 1.0 61 2-73 21-81 (279)
493 1w1w_A Structural maintenance 23.6 39 0.0013 34.7 2.8 27 33-61 24-50 (430)
494 1qhl_A Protein (cell division 23.6 34 0.0012 31.8 2.1 32 38-73 30-61 (227)
495 4g1u_C Hemin import ATP-bindin 23.6 23 0.00078 33.8 0.9 62 3-75 12-73 (266)
496 2bbs_A Cystic fibrosis transme 23.4 22 0.00076 34.4 0.8 17 34-50 63-79 (290)
497 4e22_A Cytidylate kinase; P-lo 23.2 33 0.0011 32.3 2.0 17 34-50 26-42 (252)
498 2ipc_A Preprotein translocase 23.2 2.1E+02 0.0073 32.4 8.6 96 441-553 368-464 (997)
499 3p9n_A Possible methyltransfer 22.6 1.2E+02 0.004 26.5 5.6 45 6-50 11-59 (189)
500 2woj_A ATPase GET3; tail-ancho 22.6 83 0.0028 31.3 4.9 39 36-76 19-57 (354)
No 1
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=100.00 E-value=1.6e-78 Score=672.45 Aligned_cols=518 Identities=22% Similarity=0.326 Sum_probs=348.9
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhhhh
Q 006790 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY 93 (631)
Q Consensus 14 y~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~~~ 93 (631)
|++ ||+|++||.+|++++.+++++++|||||||||+|||+|++.++... ++ ||+|+|||++|+.|+++|++++...
T Consensus 2 ~~~-R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~-kvli~t~T~~l~~Qi~~el~~l~~~ 77 (620)
T 4a15_A 2 YEN-RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KL-KVLYLVRTNSQEEQVIKELRSLSST 77 (620)
T ss_dssp ----CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TC-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CC-eEEEECCCHHHHHHHHHHHHHHhhc
Confidence 675 9999999999999999999999999999999999999999998754 46 9999999999999999999998642
Q ss_pred cccCCCCccceeEEEeCCCCcccc-ChhhhcccCcchHHH---HHHHhhhHHHHhhhhcCCCCCCCccccchHHhhhc-C
Q 006790 94 QTRHLGPAAKILAIGLSSRKNLCV-NSRVLAAENRDSVDA---ACRKRTASWVRALAAENPNIETCEFFENYEKAASA-A 168 (631)
Q Consensus 94 ~~~~~~~~~~~~~~~l~gr~~lC~-~~~~~~~~~~~~~~~---~c~~l~~~w~~~~~~g~~~~~~c~~~~~~~~~~~~-~ 168 (631)
.+++++.++||.++|+ ++.+....+ ...+. .|..+...|.. + +...|+||.+.....+. .
T Consensus 78 --------~~~~~~~l~gr~~lC~~~~~~~~~~~-~~~~~~~~~C~~l~~~~~~----~--~~~~C~~~~~~~~~gd~~~ 142 (620)
T 4a15_A 78 --------MKIRAIPMQGRVNMCILYRMVDDLHE-INAESLAKFCNMKKREVMA----G--NEAACPYFNFKIRSDETKR 142 (620)
T ss_dssp --------SCCCEEECCCHHHHCSSHHHHCCCSS-CCHHHHHHHHHHHHHHHHT----T--CTTSSTTCSGGGGCHHHHH
T ss_pred --------cCeEEEEEECCCcccccChhhhhccc-chhhhHHHHHHHHHhcccc----C--CCCCCCcccccCcccchhH
Confidence 3688999999999999 987765433 22333 78776654421 1 13579999875321110 0
Q ss_pred CCCCCCCChHHHHHhcccCCccchhhHHhhccCceEEEEcCccccCHhhHhHhh---hccCCCcEEEEeCCcchHHHHHh
Q 006790 169 VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS---KEMQKESVVVFDEAHNIDNVCIE 245 (631)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adivv~n~~~l~~~~~~~~~~---~~l~~~~~~IiDEAHnl~~~a~~ 245 (631)
.+...+++++++.+.|+.++.||||.+|+.+.+|||||+||+|||++.+++.+. ...|+++++||||||||+|+|++
T Consensus 143 ~l~~~~~die~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~ 222 (620)
T 4a15_A 143 FLFDELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRS 222 (620)
T ss_dssp HHHHHCCCHHHHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHH
T ss_pred HhccCCCCHHHHHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHH
Confidence 112357899999999999999999999999999999999999999998876432 22468999999999999999999
Q ss_pred hccceecHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHH-hhcCCCccccccccCCCCChhhhhhccCcch
Q 006790 246 ALSVSVRRQTLEGATRNLSRINQEIERFKA-TDAGRLRAEYNRLVEGL-ALRGNLPIADAWLSNPALPSDILKEAVPGNI 323 (631)
Q Consensus 246 ~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~-~~~~~l~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (631)
++|.++|..+|..+.+++..+.... +.. .....+.+.+...++.+ .... . . .... +
T Consensus 223 ~~S~~ls~~~l~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~---------~-~-~~~~---------~ 280 (620)
T 4a15_A 223 IGSFRISVESLNRADREAQAYGDPE--LSQKIHVSDLIEMIRSALQSMVSERC---------G-K-GDVR---------I 280 (620)
T ss_dssp HHCEEEEHHHHHHHHHHHHHTTCCE--EETTEEHHHHHHHHHHHHHHHHHHHC---------S-S-SCEE---------E
T ss_pred hhcceeCHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHhh---------c-c-cccC---------C
Confidence 9999999999999888776532100 000 00111111111111111 0100 0 0 0000 0
Q ss_pred hchHHHHHHHHHHHHHHHhhhhcccccccChhHHHHHHHhhhccccchhhhhHHHHHHHHHHhhhcCCCccchhHHHHHH
Q 006790 324 RRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDF 403 (631)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~l~~~~~f 403 (631)
....+...+..+.......+ ..++..+.. ..+.+... ...........+..+.+|
T Consensus 281 -~~~~l~~~~~~~~~~~~~~l----------~~~~~~l~~-----------~~~~~~~~---~~~~~~~~~~~~~~~~~f 335 (620)
T 4a15_A 281 -RFQEFMEYMRIMNKRSEREI----------RSLLNYLYL-----------FGEYVENE---KEKVGKVPFSYCSSVASR 335 (620)
T ss_dssp -CTHHHHHHHHHHHTCCHHHH----------HHHHHHHHH-----------HHHHHHHH---HHHTTSCCCCHHHHHHHH
T ss_pred -ChHHHHHHHHHhhcccHHHH----------HHHHHHHHH-----------HHHHHHhh---ccccccccccHHHHHHHH
Confidence 00111111111100000000 000111100 00000000 000000112234556666
Q ss_pred HHHhcccC-CceEEEEecCCCCCCCCCCCeEEEEecCcccccHHHhhccCEEEEecCCCCCccchhhhcCCCCccccccc
Q 006790 404 ATLVGTYT-RGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFK 482 (631)
Q Consensus 404 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~l~~~~~svIltSaTL~p~~~f~~~lG~~~~~~~~~~ 482 (631)
+..+.... .++.+|++..+ +..|+++|+||+..|+ +| +++++|||||||+|+++|.+.||++ ....+++
T Consensus 336 l~~~~~~~~~~~~~~~~~~~-------~~~l~~~~l~~~~~l~-~~-~~~~~il~SaTL~p~~~~~~~lGl~-~~~~~~~ 405 (620)
T 4a15_A 336 IIAFSDQDEEKYAAILSPED-------GGYMQAACLDPSGILE-VL-KESKTIHMSGTLDPFDFYSDITGFE-IPFKKIG 405 (620)
T ss_dssp HHHHHTSCTTTEEEEEECGG-------GCEEEEEECCTHHHHG-GG-GGSEEEEEESSCCSHHHHHHHHCCC-CCEEECC
T ss_pred HHHHhhcCCCCEEEEEEeCC-------CcEEEEEECCHHHHHH-HH-hCCeEEEEccCCCcHHHHHHHhCCC-ceeeecC
Confidence 66553333 26788887543 3689999999999999 99 9999999999999999999999998 5556677
Q ss_pred eeecCCceeeEEeeeCCCCcceeeeeccCCCHHHHHHHHHHHHHhhcccCCcEEEEecchHHHHHHHHHHhhcchHHHHh
Q 006790 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM 562 (631)
Q Consensus 483 ~~~~~~~~~~~vi~~~~~~~~l~s~f~~r~~~~~~~~l~~~i~~~~~~~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~ 562 (631)
++|+.++...++++ .++++|+.|+ +.+.+++++.|.++++.+|||+|||||||++|+++++.|+. +
T Consensus 406 spf~~~~~~~~~~~------~~~~~~~~r~-~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~------~- 471 (620)
T 4a15_A 406 EIFPPENRYIAYYD------GVSSKYDTLD-EKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF------E- 471 (620)
T ss_dssp CCSCGGGEEEEEEC------CC-------C-HHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS------C-
T ss_pred CCCCHHHeEEEEeC------CCCCcCCCCC-HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh------c-
Confidence 77777766545432 3567787765 45678999999999999999999999999999999999972 1
Q ss_pred cCCeEEEeCCCc--hhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccCCCCCceEEEEEcccCCCCCCC
Q 006790 563 QHKLVFIETQDV--VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSK 631 (631)
Q Consensus 563 ~~~~v~~e~~~~--~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf~g~~lr~VII~gLPfp~p~dP 631 (631)
... |.++. .++..++++|+ ++++|||||+||||||||||+|+.||+|||+|||||+|+ |
T Consensus 472 -~~~---~~q~~~~~~~~~ll~~f~-----~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~-p 532 (620)
T 4a15_A 472 -HMK---EYRGIDQKELYSMLKKFR-----RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPD-A 532 (620)
T ss_dssp -CEE---CCTTCCSHHHHHHHHHHT-----TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCC-H
T ss_pred -chh---ccCCCChhHHHHHHHHhc-----cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCC-H
Confidence 112 56653 35677889988 478999999999999999999999999999999999995 6
No 2
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=100.00 E-value=3.1e-68 Score=586.66 Aligned_cols=465 Identities=20% Similarity=0.292 Sum_probs=325.5
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhhh
Q 006790 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHN 92 (631)
Q Consensus 13 py~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~~ 92 (631)
+|++ ||+|.+||+.|++++.+++++++|||||||||+|||+|++.. +. +|+|+|||++|+.|+.++++++.+
T Consensus 1 ~~~~-r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------~~-~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 1 MVKL-RDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------KP-KVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp CCSC-CHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------CS-EEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CCCC-CHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------CC-eEEEEcCCHHHHHHHHHHHHHHhh
Confidence 4664 999999999999999999999999999999999999999872 46 999999999999999999998753
Q ss_pred hcccCCCCccceeEEEeCCCCccccChhhhcccCcchHHHHHHHhhhHHHHhhhhcCCCCCCCccccchHHhhhcCCCCC
Q 006790 93 YQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP 172 (631)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~c~~l~~~w~~~~~~g~~~~~~c~~~~~~~~~~~~~~~~~ 172 (631)
..++++++++||+++|+++.+. ..+ +.. .|. .|+||.+.....
T Consensus 73 --------~~~~~~~~l~gr~~~c~~~~~~-~~~-~~~--~c~------------------~c~~~~~~~~~g------- 115 (551)
T 3crv_A 73 --------KRNITFSFLVGKPSSCLYAEKG-AES-EDI--PCK------------------YCELKGSIVEVK------- 115 (551)
T ss_dssp --------SSCCCEEECCCHHHHCTTBCTT-CCG-GGC--CGG------------------GCTTTTCCCCCC-------
T ss_pred --------hcCccEEEEccccccCcCchhc-CCC-ccc--ccC------------------CCCCcccccccc-------
Confidence 2357889999999999998765 321 111 342 477665432110
Q ss_pred CCCChHHHHH----hcccCCccchhhHHhhccCceEEEEcCccccCHhhHhHhhhccCCCcEEEEeCCcchHHHHHhhcc
Q 006790 173 GVYTLQDLRA----FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248 (631)
Q Consensus 173 ~~~~~~~~~~----~~~~~~~Cpy~~~r~~~~~adivv~n~~~l~~~~~~~~~~~~l~~~~~~IiDEAHnl~~~a~~~~s 248 (631)
...+.+.+.+ .|..++.|||+.+|+.+.+|||||+||+||+++..++.+ ...++..++|||||||+++ |++++|
T Consensus 116 ~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~-~~~~~~~~vIiDEAHnl~d-~~~~~s 193 (551)
T 3crv_A 116 TDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFI-DIDLREYMIVIDEAHNLDK-VNELEE 193 (551)
T ss_dssp CCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTS-CCCSTTEEEEETTGGGGGG-GGGGGC
T ss_pred ccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhc-CCCcCCeEEEEecccchHH-HHHhhc
Confidence 0233333332 234779999999999999999999999999999776643 2346889999999999999 999999
Q ss_pred ceecHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhhcCCCccccccccCCCCChhhhhhccCcchhchHH
Q 006790 249 VSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEH 328 (631)
Q Consensus 249 ~~ls~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (631)
.+++..++..+.+++...... ..+..+...+.+. ......+...... +. .
T Consensus 194 ~~ls~~~l~~~~~~l~~~~~~-------------~~l~~l~~~l~~~--~~~~~~~~~~~~~---------~~------~ 243 (551)
T 3crv_A 194 RSLSEITIQMAIKQSKSEESR-------------RILSKLLNQLREV--VLPDEKYIKVENV---------PK------L 243 (551)
T ss_dssp EEEEHHHHHHHHHHCSCHHHH-------------HHHHHHHHHHTTS--CCSCSSCEECSCC---------CC------C
T ss_pred eecCHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH--hhccccccccccC---------hH------H
Confidence 999999999887755432110 1122233333221 0000000000000 00 0
Q ss_pred HHHHHHHHHHHHHhhhhcccccccChhHHHHHHHhhhccccchhhhhHHHHHHHHHHhhhcCCCccchhHHHHHHHHHhc
Q 006790 329 FLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVG 408 (631)
Q Consensus 329 ~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~l~~~~~f~~~~~ 408 (631)
+...+..+.+.+.+.. ....+.. . .....+..+.+|+..+.
T Consensus 244 ~~~~l~~l~~~l~~~~--------------~~~~~~~----~---------------------~~~~~~~~l~~~~~~~~ 284 (551)
T 3crv_A 244 SKEELEILADDYEDIR--------------KDSLKQG----K---------------------VNKIHIGSILRFFSLLS 284 (551)
T ss_dssp CHHHHHHHHHHHHHHH--------------HHHHHTT----C---------------------BCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------HhhhhcC----C---------------------cccchHHHHHHHHHHHh
Confidence 1111222221111100 0000000 0 00011223333332221
Q ss_pred ccCCceEEEEecCCCCCCCCCCCeEEEEecCcccccHHHhhcc-CEEEEecCCCCCccchhhhcCCCC-cc----ccccc
Q 006790 409 TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRF-QSVVITSGTLSPIDLYPRLLNFHP-VV----SRSFK 482 (631)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~l~~~~-~svIltSaTL~p~~~f~~~lG~~~-~~----~~~~~ 482 (631)
. .++++ .+. .+ .++++|+||+..|+ +++++ +++|||||||+|+++|.+.||+++ .. ...++
T Consensus 285 ~-~~~~v--~~~--------~~-~l~~~pl~~~~~l~-~~~~~~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~ 351 (551)
T 3crv_A 285 I-GSFIP--FSY--------SK-RLVIKNPEISYYLN-LLNDNELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQ 351 (551)
T ss_dssp H-SSCEE--EEE--------TT-EEEEECCCTHHHHG-GGGCTTCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTT
T ss_pred c-cCCeE--ecc--------CC-EEEEEECCHHHHHH-HHhccCceEEEEeeCCCcHHHHHHHhCCCCccccccceeecC
Confidence 1 23442 221 13 79999999999999 99998 999999999999999999999973 32 34556
Q ss_pred eeecCCceeeEEeeeCCCCcceeeeeccCCCHHHHHHHHHHHHHhhcccCCcEEEEecchHHHHHHHHHHhhcchHHHHh
Q 006790 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM 562 (631)
Q Consensus 483 ~~~~~~~~~~~vi~~~~~~~~l~s~f~~r~~~~~~~~l~~~i~~~~~~~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~ 562 (631)
++| +++...+ ++. .++++|+.|+ +.+.+++++.|.++++.+|||+|||||||++|+++++.
T Consensus 352 spf-~~~~~l~-v~~-----~~~~~~~~r~-~~~~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~----------- 412 (551)
T 3crv_A 352 KRV-SGSYECY-IGV-----DVTSKYDMRS-DNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR----------- 412 (551)
T ss_dssp SCC-SCEEEEE-EEC-----SCCCCTTTCC-HHHHHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT-----------
T ss_pred CcC-CCceEEE-EeC-----CCCCccccCC-HHHHHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh-----------
Confidence 667 5555433 332 3567787776 56779999999999999999999999999999999972
Q ss_pred cCCeEEEeCCCchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccCC---CCCceEEEEEcccCCCCCCC
Q 006790 563 QHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFD---RHYGRLVIMFGVPFQYTLSK 631 (631)
Q Consensus 563 ~~~~v~~e~~~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf~---g~~lr~VII~gLPfp~p~dP 631 (631)
..+.||+|+++. +...+++.|++ ..++|||||+||||||||||+ |+.||+|||+|||||+| ||
T Consensus 413 ~~~~v~~q~~~~-~~~~~~~~~~~----~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp 478 (551)
T 3crv_A 413 ISLPKYVESEDS-SVEDLYSAISA----NNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DD 478 (551)
T ss_dssp CCSSEEECCSSC-CHHHHHHHTTS----SSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SH
T ss_pred cCCcEEEcCCCC-CHHHHHHHHHh----cCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCC-CH
Confidence 136799999874 34667788873 246999999999999999999 99999999999999999 87
No 3
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.7e-61 Score=526.61 Aligned_cols=455 Identities=18% Similarity=0.261 Sum_probs=259.0
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
.+|+ +||.|.+||..|.+++.+++++++|||||||||++||+|++.+ ++ +|+|+|+|++|++|++++++++
T Consensus 4 ~~~~-~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~-~~~~~~~t~~l~~q~~~~~~~l- 74 (540)
T 2vl7_A 4 LKLQ-LRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KK-KVLIFTRTHSQLDSIYKNAKLL- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TC-EEEEEESCHHHHHHHHHHHGGG-
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CC-cEEEEcCCHHHHHHHHHHHHhc-
Confidence 4676 4999999999999999999999999999999999999998764 36 9999999999999999998874
Q ss_pred hhcccCCCCccceeEEEeCCCCccccChhhhcccCcchHHHHHHHhhhHHHHhhhhcCCCCCCCccccchHHhhhcCCCC
Q 006790 92 NYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP 171 (631)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~c~~l~~~w~~~~~~g~~~~~~c~~~~~~~~~~~~~~~~ 171 (631)
++++++++||+++|+++...... + +..|. .|++++......+. .+
T Consensus 75 -----------~~~~~~l~gr~~lC~~~~~~~~~--~--~~~c~------------------~c~~~~~~~~~gd~--~~ 119 (540)
T 2vl7_A 75 -----------GLKTGFLIGKSASCIYAQGDEEP--D--EINCS------------------KCRLKDKIKTIEDK--EP 119 (540)
T ss_dssp -----------TCCEEEC--------------------------------------------------------------
T ss_pred -----------CCcEEEecCCccccCCchhcccc--c--ccCCC------------------CCCchhcccccccC--Cc
Confidence 24678899999999997654211 0 01221 35554432211110 11
Q ss_pred CCCCChHHHHHhcccCCccchhhHHhhccCceEEEEcCccccCHhhHhHhh-----hccCCCcEEEEeCCcchHHHHHhh
Q 006790 172 PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS-----KEMQKESVVVFDEAHNIDNVCIEA 246 (631)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adivv~n~~~l~~~~~~~~~~-----~~l~~~~~~IiDEAHnl~~~a~~~ 246 (631)
..+| .+.+..++.|||+.+|+.+.+|||||+||+|||++..++.+. ..+++.+++|||||||+++ ++++
T Consensus 120 ~~~~-----~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~-a~~~ 193 (540)
T 2vl7_A 120 SKLI-----EEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE-ADKW 193 (540)
T ss_dssp ------------------------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG-GGGG
T ss_pred HHHH-----HHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH-HHHH
Confidence 1222 234567899999999999999999999999999998776543 1457899999999999966 8999
Q ss_pred ccceecHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhhcCCCccccccccCCCCChhhhhhccCcchhch
Q 006790 247 LSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRA 326 (631)
Q Consensus 247 ~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (631)
+|.+++..++..+.+++..... ........+.+.+..+...+..... ...+..... .+.. .
T Consensus 194 ~s~~ls~~~l~~~~~~l~~~~~----~~~~~~~~l~~~~~~l~~~l~~~~~---~~~~~~~~~---------~~~~---~ 254 (540)
T 2vl7_A 194 FTRKISRKMLERALKEIEIVER----LNRIDAKKVKDYINLLIDYMSKLIK---DGRCHELSL---------MPLP---D 254 (540)
T ss_dssp GCEEECHHHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHHHHHHTSCC---SSSEEEESC---------CCCC---C
T ss_pred hccccCHHHHHHHHHHHHHHHh----cchhhHHHHHHHHHHHHHHHHHhhc---cccccchhh---------cccc---c
Confidence 9999999999999887765321 1111223344444444444433110 000000000 0000 0
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccChhHHHHHHHhhhccccchhhhhHHHHHHHHHHhhhcCCCccchhHHHHHHHHH
Q 006790 327 EHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATL 406 (631)
Q Consensus 327 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~l~~~~~f~~~ 406 (631)
......+..+.+.+.+ ... .... ...+..+.+|+.
T Consensus 255 ~~~l~~l~~~~~~~~~---~~~---------------------~~~~--------------------~~~l~~~l~~~~- 289 (540)
T 2vl7_A 255 RETNGELIVVTRAYLN---IDE---------------------GPVK--------------------KSSLKSLLKFVE- 289 (540)
T ss_dssp HHHHHHHHHHHHHHHT---TCC---------------------SSSC--------------------CCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHH---hhc---------------------cCcc--------------------HHHHHHHHHHHH-
Confidence 1111111111111110 000 0000 001111222221
Q ss_pred hcccCCceEEEEecCCCCCCCCCCCeEEEEecCcccccHHHhhccCEEEEecCCCCCc----cchhhhcCCCCccccccc
Q 006790 407 VGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI----DLYPRLLNFHPVVSRSFK 482 (631)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~l~~~~~svIltSaTL~p~----~~f~~~lG~~~~~~~~~~ 482 (631)
. +..++|. . . .+++.|.++...+.+.+...+++|||||||+|. +.|. ..+ .
T Consensus 290 --~--~~~~~~~---~-------~-~l~~~P~~~~~~l~~~~~~~~~~IltSATL~p~~~~~~~f~--~~~--------~ 344 (540)
T 2vl7_A 290 --M--KGDLYNC---N-------G-SLVKVPSDVNQLIEDALNVKTFKVLMSGTLPESLTLTNSYK--IVV--------N 344 (540)
T ss_dssp --S--CCEEEEE---T-------T-EEEEECSCHHHHHHHHTCCSSCEEEEESSCCTTCCCTTEEE--EEC--------C
T ss_pred --h--CCCEEEE---C-------C-eEEEehHHHHHHHHHhcCccCCeEEEcccCCCCcccchhcC--Cch--------h
Confidence 1 2234443 1 1 577778877666654455566789999999993 2220 000 0
Q ss_pred eeecCCceeeEEeeeCCCCcceeeeeccCCCHHHHHHHHHHHHHhhcccCCcEEEEecchHHHHHHHHHHhhcchHHHHh
Q 006790 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM 562 (631)
Q Consensus 483 ~~~~~~~~~~~vi~~~~~~~~l~s~f~~r~~~~~~~~l~~~i~~~~~~~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~ 562 (631)
..+.... .++ ...++|||++|+++ + +++++.|.+++...+||+|||||||++|+++++.|+.
T Consensus 345 ~~~g~~~---~~~-----~~~l~s~f~~r~~~-~-~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~-------- 406 (540)
T 2vl7_A 345 ESYGRGE---YYY-----CPNVTSELRKRNSN-I-PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG-------- 406 (540)
T ss_dssp CC-CCCE---EEE-----CTTCCCCGGGHHHH-H-HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--------
T ss_pred heecCCc---cee-----ccccCCCcccccCH-H-HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--------
Confidence 0000000 111 23678999998764 5 8899999999999999999999999999999998853
Q ss_pred cCCeEEEeCCCchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccCCCC--CceEEEEEcccCCCCCCC
Q 006790 563 QHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRH--YGRLVIMFGVPFQYTLSK 631 (631)
Q Consensus 563 ~~~~v~~e~~~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf~g~--~lr~VII~gLPfp~p~dP 631 (631)
+.+|+|+++ .++..++++|++ .++|||||++|+|||||||||+ .+|+|||+|||||+|+||
T Consensus 407 --~~~~~q~~~-~~~~~~l~~f~~-----~~~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~ 469 (540)
T 2vl7_A 407 --IPVIEENKK-TRHEEVLELMKT-----GKYLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDD 469 (540)
T ss_dssp --SCEEESTTT-CCHHHHHHHHHT-----SCCEEEEEC---------------CEEEEEEESCCCCCTTSH
T ss_pred --CceEecCCC-CcHHHHHHHHhc-----CCeEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCH
Confidence 568998876 456788999976 3589999999999999999998 899999999999999987
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.76 E-value=9.5e-17 Score=169.17 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=62.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++......+.+. +++|.+||+++..|+.++++++.
T Consensus 26 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV-SVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp HSCCSCCHHHHHHHHHHT----TTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCC-CEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCe-eEEEECCCHHHHHHHHHHHHHHH
Confidence 578777999999887654 4678999999999999999999887654433345 89999999999999999988874
No 5
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.75 E-value=1.5e-16 Score=167.79 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=62.6
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
++|..+||.|.+.+..+.+. .++++++.||||+|||++|+.|++......+.++ +++|.+||+++..|+.++++++
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASP-QAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCc-cEEEECCCHHHHHHHHHHHHHH
Confidence 56777899999988776432 2378999999999999999999887655443456 8999999999999999988875
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.73 E-value=2.1e-16 Score=167.08 Aligned_cols=75 Identities=19% Similarity=0.090 Sum_probs=62.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.+||.++..|+.++++++.
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKI-QALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCc-cEEEEcCCHHHHHHHHHHHHHHh
Confidence 578878999999987765 4577999999999999999999887655433345 89999999999999999888763
No 7
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.73 E-value=3.8e-16 Score=166.83 Aligned_cols=75 Identities=23% Similarity=0.248 Sum_probs=63.6
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCC-----CCCceEEEEecchhhHHHHHHH
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-----ENPVKLIYCTRTVHEMEKTLAE 86 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~-----~~~~~vi~~t~T~~l~~Q~~~e 86 (631)
++|..|+|.|.+.+..+ .+++++++.||||+|||++|++|++......+ .+. +++|.+||++|..|+.++
T Consensus 74 ~g~~~pt~iQ~~ai~~i----~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~-~~lil~PtreLa~Q~~~~ 148 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVI----SSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRP-QVVIVSPTRELAIQIFNE 148 (434)
T ss_dssp TTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCC-SEEEECSSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHH----hcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCc-cEEEEecCHHHHHHHHHH
Confidence 67887899999988765 46788999999999999999999988776542 134 899999999999999999
Q ss_pred HHhhh
Q 006790 87 LKLLH 91 (631)
Q Consensus 87 l~~l~ 91 (631)
++++.
T Consensus 149 ~~~~~ 153 (434)
T 2db3_A 149 ARKFA 153 (434)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88863
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=5.9e-16 Score=171.68 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=64.7
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCC----CCCceEEEEecchhhHHHHHHH
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAE 86 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~----~~~~~vi~~t~T~~l~~Q~~~e 86 (631)
.++|+.+||.|.+.+..+... +++.+++.||||+|||++|++|++......+ .+. +++|.+||++|..|+.++
T Consensus 38 ~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~-~~lvl~Ptr~La~Q~~~~ 114 (579)
T 3sqw_A 38 RMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV-KAVIVAPTRDLALQIEAE 114 (579)
T ss_dssp TTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC-CEEEECSSHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCC-eEEEEcchHHHHHHHHHH
Confidence 478988899999988776521 4678999999999999999999988766542 124 899999999999999998
Q ss_pred HHhhh
Q 006790 87 LKLLH 91 (631)
Q Consensus 87 l~~l~ 91 (631)
++++.
T Consensus 115 ~~~~~ 119 (579)
T 3sqw_A 115 VKKIH 119 (579)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.71 E-value=6.8e-16 Score=160.95 Aligned_cols=75 Identities=16% Similarity=0.106 Sum_probs=61.8
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
++|..+||.|.+.+..+. ..++++++.||||+|||++|+.|++.+....+ +. +++|.+||+++..|+.++++.+.
T Consensus 24 ~g~~~~~~~Q~~~i~~~~---~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~-~~-~~lil~P~~~L~~q~~~~~~~~~ 98 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLFL---NDEYNIVAQARTGSGKTASFAIPLIELVNENN-GI-EAIILTPTRELAIQVADEIESLK 98 (367)
T ss_dssp HTCCSCCHHHHHHHHHHH---HTCSEEEEECCSSSSHHHHHHHHHHHHSCSSS-SC-CEEEECSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHh---CCCCCEEEECCCCChHHHHHHHHHHHHhcccC-CC-cEEEEcCCHHHHHHHHHHHHHHh
Confidence 467667999999877653 44478999999999999999999887765432 45 89999999999999999888764
No 10
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.71 E-value=9.1e-16 Score=163.12 Aligned_cols=75 Identities=23% Similarity=0.180 Sum_probs=61.6
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCC------------------CCceEEEE
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE------------------NPVKLIYC 73 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~------------------~~~~vi~~ 73 (631)
++|..++|.|.+.+..+ .+++++++.||||+|||++|++|++......+. +. +++|.
T Consensus 33 ~~~~~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lil 107 (417)
T 2i4i_A 33 TRYTRPTPVQKHAIPII----KEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYP-ISLVL 107 (417)
T ss_dssp HTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCC-SEEEE
T ss_pred CCCCCCCHHHHHHHHHH----ccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCc-cEEEE
Confidence 46777799999988654 467889999999999999999998877543211 14 79999
Q ss_pred ecchhhHHHHHHHHHhhh
Q 006790 74 TRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 74 t~T~~l~~Q~~~el~~l~ 91 (631)
+||+++..|+.++++++.
T Consensus 108 ~Pt~~L~~q~~~~~~~~~ 125 (417)
T 2i4i_A 108 APTRELAVQIYEEARKFS 125 (417)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 999999999999888764
No 11
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.70 E-value=1.8e-15 Score=160.58 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=62.8
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.+||+++..|+.++++++.
T Consensus 55 ~g~~~~~~~Q~~ai~~i~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQII----KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRET-QALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCCchHHHHHHHHHHHhhccCCc-eEEEEcCcHHHHHHHHHHHHHHh
Confidence 678878999999887754 4678999999999999999999887654333345 89999999999999999888763
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.69 E-value=2.7e-15 Score=165.97 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=64.4
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCC----CCCceEEEEecchhhHHHHHHH
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAE 86 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~----~~~~~vi~~t~T~~l~~Q~~~e 86 (631)
.++|..+||.|.+.+..+.. .+++++++.||||+|||++|++|++......+ .+. +++|.+||++|..|+.++
T Consensus 89 ~~g~~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~-~~lil~Ptr~La~Q~~~~ 165 (563)
T 3i5x_A 89 RMEFPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV-KAVIVAPTRDLALQIEAE 165 (563)
T ss_dssp TTCCSSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC-CEEEECSSHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe-eEEEEcCcHHHHHHHHHH
Confidence 36888889999998877652 14678999999999999999999998876542 123 899999999999999999
Q ss_pred HHhhh
Q 006790 87 LKLLH 91 (631)
Q Consensus 87 l~~l~ 91 (631)
++++.
T Consensus 166 ~~~~~ 170 (563)
T 3i5x_A 166 VKKIH 170 (563)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.67 E-value=2.6e-15 Score=159.29 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=63.3
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
++|..+||.|.+.+..+.+. .++++++.||||+|||++|++|++........+. +++|.+||+++..|+.+.++++.
T Consensus 43 ~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 43 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp TTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCC-CEEEECCCHHHHHHHHHHHHHHH
Confidence 67887899999988776532 2478999999999999999999887665444345 89999999999999988887763
No 14
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.66 E-value=4.5e-15 Score=163.59 Aligned_cols=69 Identities=25% Similarity=0.250 Sum_probs=59.9
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
.|+|..+||.|.+.+..+. +++.+++.||||+|||++|++|++.. .+ +++|.+||++|..|.++.++.+
T Consensus 39 ~fg~~~~rp~Q~~~i~~il----~g~d~lv~~pTGsGKTl~~~lpal~~------~g-~~lVisP~~~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 39 VFKLEKFRPLQLETINVTM----AGKEVFLVMPTGGGKSLCYQLPALCS------DG-FTLVICPLISLMEDQLMVLKQL 107 (591)
T ss_dssp TSCCCSCCTTHHHHHHHHH----TTCCEEEECCTTSCTTHHHHHHHHTS------SS-EEEEECSCHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHH----cCCCEEEEECCCChHHHHHHHHHHHc------CC-cEEEEeCHHHHHHHHHHHHHhc
Confidence 4899989999999887764 46789999999999999999998641 35 8999999999999999988764
No 15
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.64 E-value=6.8e-15 Score=156.15 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=63.6
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
.++|..+||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.+||+++..|+.++++++
T Consensus 57 ~~~~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 57 AYGFEKPSAIQQRAILPCI----KGYDVIAQAQSGTGKTATFAISILQQIELDLKAT-QALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHhHHHh----CCCCEEEECCCCCcccHHHHHHHHHHHhhcCCce-eEEEEeChHHHHHHHHHHHHHH
Confidence 3788888999999886654 4678999999999999999999887665443356 8999999999999999988876
Q ss_pred h
Q 006790 91 H 91 (631)
Q Consensus 91 ~ 91 (631)
.
T Consensus 132 ~ 132 (414)
T 3eiq_A 132 G 132 (414)
T ss_dssp G
T ss_pred h
Confidence 4
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.64 E-value=3.1e-14 Score=155.13 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=59.6
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
.|+|..+||.|.+.+..+. +++.+++.||||+|||++|++|++.. .+ +++|.+||++|..|.++.++.+
T Consensus 20 ~~g~~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l~~------~g-~~lvi~P~~aL~~q~~~~l~~~ 88 (523)
T 1oyw_A 20 TFGYQQFRPGQEEIIDTVL----SGRDCLVVMPTGGGKSLCYQIPALLL------NG-LTVVVSPLISLMKDQVDQLQAN 88 (523)
T ss_dssp TTCCSSCCTTHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHS------SS-EEEEECSCHHHHHHHHHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHHH----cCCCEEEECCCCcHHHHHHHHHHHHh------CC-CEEEECChHHHHHHHHHHHHHc
Confidence 5999989999999887764 56789999999999999999998742 35 8999999999999999888763
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.63 E-value=1.9e-14 Score=152.86 Aligned_cols=71 Identities=23% Similarity=0.132 Sum_probs=60.4
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
.|||++ +|.|.+.+..+. +++++++.||||+|||++|+.|++.... .++ +++|.+||++|..|+.++++.+
T Consensus 17 ~~~~~~-~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~-~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 17 KFGKDL-TGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR---KGK-KSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp HHSSCC-CHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHHT---TTC-CEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCCC-CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCC-EEEEEECCHHHHHHHHHHHHHH
Confidence 478975 999999887654 5678999999999999999999776552 246 8999999999999999998885
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.58 E-value=2.9e-15 Score=163.16 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=59.9
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
.+|..+|+.|.+.+..+.+. .++++++.||||+|||++|+.|++........++ +++|.+||+++..|+.++++.+
T Consensus 137 ~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~-~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 137 XXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKP-QAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp --CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSC-CEEEECSCHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCc-eEEEEECcHHHHHHHHHHHHHh
Confidence 35555699999888766432 2478999999999999999999887654443345 8999999999999999988875
No 19
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=137.64 Aligned_cols=74 Identities=20% Similarity=0.042 Sum_probs=60.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhC------CCCCceEEEEecchhhHHHHHH
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK------PENPVKLIYCTRTVHEMEKTLA 85 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~------~~~~~~vi~~t~T~~l~~Q~~~ 85 (631)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++...... ..++ +++|.+||+++..|+.+
T Consensus 38 ~g~~~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~ 112 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP-GMLVLTPTRELALHVEA 112 (228)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC-SEEEECSSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC-cEEEEeCCHHHHHHHHH
Confidence 577777999999886653 578899999999999999999988765431 1245 89999999999999999
Q ss_pred HHHhh
Q 006790 86 ELKLL 90 (631)
Q Consensus 86 el~~l 90 (631)
+++++
T Consensus 113 ~~~~~ 117 (228)
T 3iuy_A 113 ECSKY 117 (228)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88875
No 20
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.51 E-value=3.9e-14 Score=136.96 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=63.0
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++.+......+. +++|.+||+++..|+.++++++.
T Consensus 32 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 106 (224)
T 1qde_A 32 YGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAP-QALMLAPTRELALQIQKVVMALA 106 (224)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCc-eEEEEECCHHHHHHHHHHHHHHh
Confidence 577778999998887654 5678999999999999999999887765444455 89999999999999999888763
No 21
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.51 E-value=5.4e-14 Score=137.73 Aligned_cols=76 Identities=13% Similarity=0.015 Sum_probs=63.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCC-----CCCceEEEEecchhhHHHHHHH
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-----ENPVKLIYCTRTVHEMEKTLAE 86 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~-----~~~~~vi~~t~T~~l~~Q~~~e 86 (631)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++......+ .+. +++|.+||+++..|+.+.
T Consensus 47 ~g~~~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~-~~lil~Pt~~L~~Q~~~~ 121 (242)
T 3fe2_A 47 QNFTEPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP-ICLVLAPTRELAQQVQQV 121 (242)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC-SEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC-EEEEEeCcHHHHHHHHHH
Confidence 678878999999887654 5678999999999999999999988765421 245 899999999999999998
Q ss_pred HHhhhh
Q 006790 87 LKLLHN 92 (631)
Q Consensus 87 l~~l~~ 92 (631)
++++.+
T Consensus 122 ~~~~~~ 127 (242)
T 3fe2_A 122 AAEYCR 127 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887643
No 22
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.51 E-value=5.1e-14 Score=134.26 Aligned_cols=76 Identities=16% Similarity=0.029 Sum_probs=63.4
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
.++|..+||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.+||+++..|+.++++++
T Consensus 20 ~~g~~~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 20 EMGWEKPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNI-QAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp TTTCCSCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSC-CEEEECSCHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCe-eEEEEeCcHHHHHHHHHHHHHH
Confidence 3688878999999887654 5678999999999999999999887654443345 8999999999999999988876
Q ss_pred h
Q 006790 91 H 91 (631)
Q Consensus 91 ~ 91 (631)
.
T Consensus 95 ~ 95 (206)
T 1vec_A 95 S 95 (206)
T ss_dssp T
T ss_pred H
Confidence 4
No 23
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.51 E-value=2.4e-12 Score=151.88 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=66.9
Q ss_pred eeCCCCCCChHHHHHHHHHHHHHhcCC--cEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHH
Q 006790 10 VYFPYDNIYPEQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (631)
Q Consensus 10 ~~Fpy~~~r~~Q~~~~~~v~~~l~~~~--~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el 87 (631)
-.|||++ +|.|.+.+..+.+.+.+++ ..++.||||+|||++++.+++.... .++ +++|.+||.++..|..+++
T Consensus 598 ~~f~~~~-t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~-~vlvlvPt~~La~Q~~~~~ 672 (1151)
T 2eyq_A 598 DSFPFET-TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHK-QVAVLVPTTLLAQQHYDNF 672 (1151)
T ss_dssp HTCCSCC-CHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTC-EEEEECSSHHHHHHHHHHH
T ss_pred HhCCCCC-CHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCC-eEEEEechHHHHHHHHHHH
Confidence 4699996 9999999999999998876 8999999999999999998776543 256 9999999999999999988
Q ss_pred Hhh
Q 006790 88 KLL 90 (631)
Q Consensus 88 ~~l 90 (631)
...
T Consensus 673 ~~~ 675 (1151)
T 2eyq_A 673 RDR 675 (1151)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 24
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=136.00 Aligned_cols=76 Identities=17% Similarity=0.043 Sum_probs=64.4
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
.++|..+||.|.+.+..+. +++++++.||||+|||++|++|++......+.+. +++|.+||+++..|+.++++++
T Consensus 60 ~~g~~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~-~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 60 QLGWTKPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETPQRL-FALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSS-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence 3678778999999887654 5688999999999999999999987766654445 8999999999999999988876
Q ss_pred h
Q 006790 91 H 91 (631)
Q Consensus 91 ~ 91 (631)
.
T Consensus 135 ~ 135 (249)
T 3ber_A 135 G 135 (249)
T ss_dssp H
T ss_pred h
Confidence 4
No 25
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.50 E-value=1.7e-12 Score=152.16 Aligned_cols=71 Identities=23% Similarity=0.132 Sum_probs=59.6
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
.+||++ +|.|.+.+..+. +++++++.||||+|||++||.|++.... .++ +++|.+||++|..|+.+.++.+
T Consensus 74 ~~gf~p-t~iQ~~ai~~il----~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~-~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGKDL-TGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR---KGK-KSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSSCC-CHHHHHHHHHHT----TTCCEEECCSTTCCHHHHHHHHHHHHHT---TTC-CEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCCCC-CHHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCC-eEEEEechHHHHHHHHHHHHHh
Confidence 478875 999998887654 4678999999999999999988766552 246 8999999999999999988874
No 26
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.50 E-value=2.2e-12 Score=139.44 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=57.3
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 14 y~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
++ +||.|.+.+..+.+ + ++++.+|||+|||++++.+++...... ++ +++|.+||.++..|+.+++.+.
T Consensus 8 ~~-l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~~--~~-~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 8 IQ-PRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTKY--GG-KVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp HC-CCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHHS--CS-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CC-ccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhcC--CC-eEEEEECCHHHHHHHHHHHHHH
Confidence 55 49999999877643 3 899999999999999999977765522 46 8999999999999999999875
No 27
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.49 E-value=4.5e-14 Score=136.09 Aligned_cols=75 Identities=16% Similarity=0.053 Sum_probs=63.3
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.+||+++..|+.++++++.
T Consensus 22 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 96 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEV-QAVITAPTRELATQIYHETLKIT 96 (219)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCc-eEEEEcCcHHHHHHHHHHHHHHh
Confidence 677778999999987665 4678999999999999999999887765443345 89999999999999999888864
No 28
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.7e-12 Score=152.27 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=62.6
Q ss_pred eEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHH
Q 006790 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (631)
Q Consensus 8 ~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el 87 (631)
..-.|||++ +|.|.+.+..+ .++..+++.||||+|||++|++|++.... . ++ +++|.+||++|..|..+++
T Consensus 177 ~~~~~~f~l-tp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~-~--g~-rvlvl~PtraLa~Q~~~~l 247 (1108)
T 3l9o_A 177 EARTYPFTL-DPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLK-N--KQ-RVIYTSPIKALSNQKYREL 247 (1108)
T ss_dssp CSSCCSSCC-CHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHH-T--TC-EEEEEESSHHHHHHHHHHH
T ss_pred HHHhCCCCC-CHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHh-c--CC-eEEEEcCcHHHHHHHHHHH
Confidence 455789985 99999887764 67789999999999999999999776653 2 46 9999999999999999988
Q ss_pred Hhh
Q 006790 88 KLL 90 (631)
Q Consensus 88 ~~l 90 (631)
...
T Consensus 248 ~~~ 250 (1108)
T 3l9o_A 248 LAE 250 (1108)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 29
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.48 E-value=1.8e-13 Score=134.93 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=62.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCC---------CCCceEEEEecchhhHHH
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP---------ENPVKLIYCTRTVHEMEK 82 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~---------~~~~~vi~~t~T~~l~~Q 82 (631)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++....... .+. +++|.+||+++..|
T Consensus 41 ~g~~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q 115 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP-KCLILAPTRELAIQ 115 (253)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC-SEEEECSSHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc-eEEEEECCHHHHHH
Confidence 567778999999887654 4678999999999999999999887765321 124 89999999999999
Q ss_pred HHHHHHhhh
Q 006790 83 TLAELKLLH 91 (631)
Q Consensus 83 ~~~el~~l~ 91 (631)
+.++++++.
T Consensus 116 ~~~~~~~~~ 124 (253)
T 1wrb_A 116 ILSESQKFS 124 (253)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888763
No 30
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.48 E-value=1.8e-12 Score=147.27 Aligned_cols=73 Identities=26% Similarity=0.241 Sum_probs=61.3
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
++|..++|.|.+.+..+ +.+++++++.||||+|||+++..|++...... +. +++|.+||+++..|..++++++
T Consensus 26 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~-~il~i~P~r~La~q~~~~~~~~ 98 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GG-KAIYVTPLRALTNEKYLTFKDW 98 (715)
T ss_dssp TSCCBCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CS-EEEEECSCHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CC-eEEEEeCcHHHHHHHHHHHHHh
Confidence 68877899999988752 44578999999999999999999988765533 46 9999999999999999988654
No 31
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.48 E-value=4.8e-14 Score=138.40 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=62.4
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCC-CCCceEEEEecchhhHHHHHHHHHhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-ENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~-~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
.+|..+||.|.+.+..+. +++++++.||||+|||++|++|++....... .+. +++|.+||+++..|+.++++++
T Consensus 47 ~g~~~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVML----HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGF-RALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence 578878999999887654 5678999999999999999999887765322 244 8999999999999999988876
Q ss_pred h
Q 006790 91 H 91 (631)
Q Consensus 91 ~ 91 (631)
.
T Consensus 122 ~ 122 (245)
T 3dkp_A 122 S 122 (245)
T ss_dssp T
T ss_pred h
Confidence 3
No 32
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.48 E-value=1.1e-13 Score=134.32 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=63.2
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
.++|..+||.|.+.+..+ .+++++++.||||+|||++|++|++........+. +++|.+||+++..|+.++++++
T Consensus 41 ~~g~~~~~~~Q~~~i~~~----~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 41 AAGFERPSPVQLKAIPLG----RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST-QILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp HTTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence 367887799999988764 45688999999999999999999887654433346 8999999999999999988876
Q ss_pred h
Q 006790 91 H 91 (631)
Q Consensus 91 ~ 91 (631)
.
T Consensus 116 ~ 116 (230)
T 2oxc_A 116 G 116 (230)
T ss_dssp T
T ss_pred h
Confidence 3
No 33
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.47 E-value=1.2e-13 Score=133.09 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=62.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.+||+++..|+.++++++.
T Consensus 32 ~g~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV-SVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp TTCCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCC-CEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCE-EEEEEeCCHHHHHHHHHHHHHHH
Confidence 678877999999887655 4578999999999999999999887654433234 89999999999999999988864
No 34
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.46 E-value=1.8e-12 Score=146.97 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=57.6
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
++|..+||.|.+.+..+ .+++++++.||||+|||+++..|++..... +. +++|.+||+++..|..++++++
T Consensus 21 ~g~~~l~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~-~~l~i~P~r~La~q~~~~~~~~ 91 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEKV----FSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GG-KSLYVVPLRALAGEKYESFKKW 91 (702)
T ss_dssp C---CCCCCCHHHHHHH----TTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TC-CEEEEESSHHHHHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHH----hCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CC-cEEEEeCcHHHHHHHHHHHHHH
Confidence 78877899999888773 457899999999999999999998765442 46 8999999999999999988654
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.45 E-value=1.9e-12 Score=150.45 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=61.1
Q ss_pred eEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHH
Q 006790 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (631)
Q Consensus 8 ~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el 87 (631)
..-.|||++ +|.|.+.+..+ .+++++++.||||+|||++|+.|+..... . +. +++|.+||+++..|+.+++
T Consensus 32 ~~~~~~f~l-~~~Q~~aI~~i----l~g~~vlv~apTGsGKTlv~~~~i~~~~~-~--g~-~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 32 PARSWPFEL-DTFQKEAVYHL----EQGDSVFVAAHTSAGKTVVAEYAIAMAHR-N--MT-KTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp CSCCCSSCC-CHHHHHHHHHH----HTTCEEEEECCTTSCSHHHHHHHHHHHHH-T--TC-EEEEEESCGGGHHHHHHHH
T ss_pred HHHhCCCCC-CHHHHHHHHHH----HcCCCEEEEECCCCcHHHHHHHHHHHHHh-c--CC-eEEEEeCCHHHHHHHHHHH
Confidence 345799996 99999877654 56789999999999999999998665543 2 46 8999999999999999988
Q ss_pred Hhh
Q 006790 88 KLL 90 (631)
Q Consensus 88 ~~l 90 (631)
...
T Consensus 103 ~~~ 105 (997)
T 4a4z_A 103 KET 105 (997)
T ss_dssp HTT
T ss_pred HHH
Confidence 763
No 36
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.45 E-value=3.5e-13 Score=128.45 Aligned_cols=74 Identities=20% Similarity=0.135 Sum_probs=61.3
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhC---CCCCceEEEEecchhhHHHHHHHHH
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK---PENPVKLIYCTRTVHEMEKTLAELK 88 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~---~~~~~~vi~~t~T~~l~~Q~~~el~ 88 (631)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++...... ..+. +++|.+||+++..|+.++++
T Consensus 19 ~~~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~ 93 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKP-RALVLTPTRELALQVASELT 93 (207)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCC-SEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCC-cEEEEECCHHHHHHHHHHHH
Confidence 577778999999887654 567899999999999999999988765421 1245 89999999999999999888
Q ss_pred hh
Q 006790 89 LL 90 (631)
Q Consensus 89 ~l 90 (631)
++
T Consensus 94 ~~ 95 (207)
T 2gxq_A 94 AV 95 (207)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 37
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.44 E-value=3.1e-13 Score=131.81 Aligned_cols=75 Identities=17% Similarity=0.102 Sum_probs=61.9
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhC----CCCCceEEEEecchhhHHHHHHHH
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK----PENPVKLIYCTRTVHEMEKTLAEL 87 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~----~~~~~~vi~~t~T~~l~~Q~~~el 87 (631)
++|..++|.|.+.+..+ .+++++++.||||+|||++|++|++...... ..+. +++|.+||+++..|+.+++
T Consensus 43 ~~~~~~~~~Q~~~i~~~----~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~ 117 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLA----LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGL-GVLIISPTRELAYQTFEVL 117 (236)
T ss_dssp TTCCBCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCC-CEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH----hCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCc-eEEEEeCCHHHHHHHHHHH
Confidence 57777899999888765 3568899999999999999999988775432 1245 8999999999999999988
Q ss_pred Hhhh
Q 006790 88 KLLH 91 (631)
Q Consensus 88 ~~l~ 91 (631)
+.+.
T Consensus 118 ~~~~ 121 (236)
T 2pl3_A 118 RKVG 121 (236)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8753
No 38
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.44 E-value=2.5e-13 Score=132.50 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=62.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.+||+++..|+.++++++.
T Consensus 48 ~g~~~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 122 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEIEFKET-QALVLAPTRELAQQIQKVILALG 122 (237)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc-eEEEEECcHHHHHHHHHHHHHHh
Confidence 678877999999887654 5678999999999999999999887654433345 89999999999999999888763
No 39
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.42 E-value=5.7e-13 Score=131.97 Aligned_cols=75 Identities=21% Similarity=0.212 Sum_probs=62.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCC----CCCceEEEEecchhhHHHHHHHH
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAEL 87 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~----~~~~~vi~~t~T~~l~~Q~~~el 87 (631)
++|..+||.|.+++..+.+ ++++++.||||+|||++|++|++......+ .+. +++|.+||++|..|+.+++
T Consensus 72 ~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~-~~lil~Pt~~La~q~~~~~ 146 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGT-GVLILSPTRELAMQTFGVL 146 (262)
T ss_dssp TTCCBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCC-CEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCc-eEEEEeCCHHHHHHHHHHH
Confidence 5788789999999877653 577999999999999999999887765421 245 8999999999999999988
Q ss_pred Hhhh
Q 006790 88 KLLH 91 (631)
Q Consensus 88 ~~l~ 91 (631)
+++.
T Consensus 147 ~~~~ 150 (262)
T 3ly5_A 147 KELM 150 (262)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8864
No 40
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.38 E-value=7.5e-12 Score=146.84 Aligned_cols=71 Identities=14% Similarity=0.065 Sum_probs=60.4
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
.|+|. + |.|.+.+..+. +++++++.||||+|||+ |++|++...... +. +++|.+||++|..|+.+.++++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~-~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRIL----RKESFAATAPTGVGKTS-FGLAMSLFLALK--GK-RCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHH----TTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SC-CEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHH----hCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CC-eEEEEeccHHHHHHHHHHHHHH
Confidence 47898 7 99999887765 56889999999999998 888888776543 56 8999999999999999988876
Q ss_pred h
Q 006790 91 H 91 (631)
Q Consensus 91 ~ 91 (631)
.
T Consensus 123 ~ 123 (1054)
T 1gku_B 123 A 123 (1054)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.36 E-value=1.3e-12 Score=137.47 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=63.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++........++ +++|.+||.++..|+.+++.++.
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAP-QALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp HTCCSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCC-CEEEEcCCHHHHHHHHHHHHHHh
Confidence 577778999999887764 4678999999999999999999887765444456 89999999999999999888763
No 42
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.36 E-value=9.8e-13 Score=132.84 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=62.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
++|..|+|.|.+.+..+... .++++++.||||+|||++|++|++........+. +++|.+||++|..|+.+.++.+.
T Consensus 110 ~g~~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~-~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp TTCCSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhccCCCc-eEEEEcCcHHHHHHHHHHHHHHH
Confidence 57887899999888655321 1378999999999999999999988765544344 89999999999999999888764
No 43
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.34 E-value=3.1e-12 Score=131.39 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=60.0
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
.++|..+||.|.+.+..+. +++++++.||||+|||++|+.|++.. +. +++|.+||+++..|+.++++++
T Consensus 11 ~~g~~~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~------~~-~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 11 EMGFKNFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIPILEL------GM-KSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHH------TC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHHHHhh------cC-CEEEEeCCHHHHHHHHHHHHHH
Confidence 4788888999999887654 56789999999999999999997652 45 8999999999999999988876
Q ss_pred h
Q 006790 91 H 91 (631)
Q Consensus 91 ~ 91 (631)
.
T Consensus 80 ~ 80 (337)
T 2z0m_A 80 G 80 (337)
T ss_dssp T
T ss_pred h
Confidence 3
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.32 E-value=1.2e-10 Score=141.57 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=59.3
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHh
Q 006790 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (631)
Q Consensus 14 y~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~ 89 (631)
|..+.|.|.+....++ ..++++++.||||+|||+++.+|.+......+ +. +++|.+||++|..|..+++..
T Consensus 924 f~~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~-kavyi~P~raLa~q~~~~~~~ 994 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EG-RCVYITPMEALAEQVYMDWYE 994 (1724)
T ss_dssp CSBCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TC-CEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CC-EEEEEcChHHHHHHHHHHHHH
Confidence 4447899998776653 56789999999999999999999877665553 45 899999999999999998875
No 45
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.30 E-value=6.1e-12 Score=120.51 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=57.1
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhC---CCCCceEEEEecchhhHHH-HHHH
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK---PENPVKLIYCTRTVHEMEK-TLAE 86 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~---~~~~~~vi~~t~T~~l~~Q-~~~e 86 (631)
.+.++ +||.|.+.+..+. +++++++.||||+|||++++.+++...... ..+. +++|.++|+++..| +.++
T Consensus 29 ~~~~~-l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~-~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 29 EPELQ-LRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPG-KVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp SCCCC-CCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCC-CEEEEESSHHHHHHHHHHT
T ss_pred cCCCC-chHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCC-cEEEEECHHHHHHHHHHHH
Confidence 34555 5999999988765 467899999999999999999987654431 1235 89999999999999 5455
Q ss_pred HHhh
Q 006790 87 LKLL 90 (631)
Q Consensus 87 l~~l 90 (631)
+..+
T Consensus 103 ~~~~ 106 (216)
T 3b6e_A 103 FQPF 106 (216)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 46
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.26 E-value=1.4e-11 Score=135.80 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=61.8
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCC--CCceEEEEecchhhHHHHHHHHHhh
Q 006790 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 13 py~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~--~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
||++ ||.|.+.+..+. +++++++.||||+|||++|++|++......+. ++ +++|.+||+++..|+.++++++
T Consensus 2 ~~~~-~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 2 PLKP-RNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKG-KVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCC-CHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCC-cHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCC-EEEEEeCCHHHHHHHHHHHHHH
Confidence 6775 999999988764 56789999999999999999998877665431 45 8999999999999999998886
Q ss_pred h
Q 006790 91 H 91 (631)
Q Consensus 91 ~ 91 (631)
.
T Consensus 76 ~ 76 (555)
T 3tbk_A 76 F 76 (555)
T ss_dssp H
T ss_pred h
Confidence 4
No 47
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.23 E-value=2e-11 Score=134.56 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=59.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCC--CCceEEEEecchhhHHHHHHHHHh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKL 89 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~--~~~~vi~~t~T~~l~~Q~~~el~~ 89 (631)
.++++ ||.|.+.+..+. +++++++.||||+|||++|++|++......+. ++ +++|.+||+++..|+.+++++
T Consensus 4 ~~~~~-~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 4 ETKKA-RSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ----C-CHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 46775 999999887764 46789999999999999999998877665432 45 899999999999999999988
Q ss_pred hh
Q 006790 90 LH 91 (631)
Q Consensus 90 l~ 91 (631)
+.
T Consensus 78 ~~ 79 (556)
T 4a2p_A 78 HF 79 (556)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 48
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.22 E-value=9.2e-11 Score=132.23 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=66.7
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCC--cEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHH
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~--~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~ 88 (631)
.+||+ +++.|.+.+..|.+.+..+. +.++.||||+|||++|+.|++..... +. +++|.+||.++..|..+++.
T Consensus 364 ~lpf~-lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~-qvlvlaPtr~La~Q~~~~l~ 438 (780)
T 1gm5_A 364 SLPFK-LTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GF-QTAFMVPTSILAIQHYRRTV 438 (780)
T ss_dssp HSSSC-CCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TS-CEEEECSCHHHHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CC-eEEEEeCcHHHHHHHHHHHH
Confidence 58996 59999999999999987763 79999999999999999998876542 46 89999999999999999888
Q ss_pred hhh
Q 006790 89 LLH 91 (631)
Q Consensus 89 ~l~ 91 (631)
++.
T Consensus 439 ~~~ 441 (780)
T 1gm5_A 439 ESF 441 (780)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 49
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.21 E-value=4.1e-11 Score=135.91 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=62.3
Q ss_pred eCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCC--CCceEEEEecchhhHHHHHHHHH
Q 006790 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELK 88 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~--~~~~vi~~t~T~~l~~Q~~~el~ 88 (631)
.|+|..+||.|.+.+..+. +++++++.||||+|||++|++|++......+. ++ +++|.+||.++..|+.++++
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l----~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~-~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAM----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp TTC--CCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCC-CEEEECSSHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCC-eEEEEECCHHHHHHHHHHHH
Confidence 4788888999999987754 46789999999999999999998877655432 25 89999999999999999988
Q ss_pred hhh
Q 006790 89 LLH 91 (631)
Q Consensus 89 ~l~ 91 (631)
++.
T Consensus 83 ~~~ 85 (696)
T 2ykg_A 83 KYF 85 (696)
T ss_dssp HHT
T ss_pred HHh
Confidence 864
No 50
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.20 E-value=1.3e-11 Score=133.45 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=62.6
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
++|..|+|.|.+.+..+... .++++++.||||+|||++|++|++........++ +++|.+||++|..|+.+.++++.
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~-~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCC-cEEEEeChHHHHHHHHHHHHHHH
Confidence 67887899999988776431 2478999999999999999999887655443344 89999999999999988877764
No 51
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.16 E-value=6.6e-11 Score=135.90 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=60.0
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCC--CCceEEEEecchhhHHHHHHHHHhh
Q 006790 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 13 py~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~--~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
+|..+||.|.+.+..+. +++++++.||||+|||++|++|++......+. ++ +++|.+||+++..|+.++++++
T Consensus 245 g~~~l~~~Q~~~i~~~l----~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~-~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp ---CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH----hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 36667999999887653 46789999999999999999998877665431 45 8999999999999999998886
Q ss_pred h
Q 006790 91 H 91 (631)
Q Consensus 91 ~ 91 (631)
.
T Consensus 320 ~ 320 (797)
T 4a2q_A 320 F 320 (797)
T ss_dssp H
T ss_pred c
Confidence 4
No 52
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.14 E-value=9e-09 Score=114.32 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=56.9
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
.+|. |+|.|..-+-.+ .+|+ +.||+||+|||++|++|++..+.. ++ .|.|.|+|..|..|..+++..+.
T Consensus 80 lG~~-pt~VQ~~~ip~l----l~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~-~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 80 TGMF-PFKVQLMGGVAL----HDGN--IAEMKTGEGKTLTSTLPVYLNALT---GK-GVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp HSCC-CCHHHHHHHHHH----HTTS--EEECCTTSCHHHHHHHHHHHHHTT---SS-CEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCC-CcHHHHHhhHHH----hCCC--EEEccCCcHHHHHHHHHHHHHHHc---CC-CEEEEeCCHHHHHHHHHHHHHHH
Confidence 4675 599998876544 3455 999999999999999998755432 56 89999999999999999888875
Q ss_pred hh
Q 006790 92 NY 93 (631)
Q Consensus 92 ~~ 93 (631)
++
T Consensus 149 ~~ 150 (844)
T 1tf5_A 149 EF 150 (844)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 53
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.12 E-value=3.8e-11 Score=136.23 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=58.6
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCC---CCCceEEEEecchhhHHHH-HHHHH
Q 006790 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP---ENPVKLIYCTRTVHEMEKT-LAELK 88 (631)
Q Consensus 13 py~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~---~~~~~vi~~t~T~~l~~Q~-~~el~ 88 (631)
+|+ +||.|.+.+..+.+ ++++++.+|||+|||++|++|++......+ .++ +++|.+||++|..|+ .++++
T Consensus 5 ~~~-l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~-~vlvl~P~~~L~~Q~~~~~l~ 78 (699)
T 4gl2_A 5 MLQ-LRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPG-KVIVLVNKVLLVEQLFRKEFQ 78 (699)
T ss_dssp --C-CCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCC-CBCCEESCSHHHHHHHHHTHH
T ss_pred CCC-ccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCC-eEEEEECCHHHHHHHHHHHHH
Confidence 466 49999998887654 678999999999999999999877654321 125 899999999999999 88888
Q ss_pred hhh
Q 006790 89 LLH 91 (631)
Q Consensus 89 ~l~ 91 (631)
++.
T Consensus 79 ~~~ 81 (699)
T 4gl2_A 79 PFL 81 (699)
T ss_dssp HHH
T ss_pred HHc
Confidence 864
No 54
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.10 E-value=1.2e-10 Score=135.45 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=59.1
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCC--CCceEEEEecchhhHHHHHHHHHhhh
Q 006790 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 14 y~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~--~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
+..+||.|.+.+..+. +++++++.||||+|||++|++|++......+. ++ +++|.+||+++..|+.++++++.
T Consensus 246 ~~~~r~~Q~~ai~~il----~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~-~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCC-CEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCC-eEEEEeCCHHHHHHHHHHHHHHh
Confidence 5557999999887763 46789999999999999999998766544321 45 89999999999999999998864
No 55
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.09 E-value=4.4e-10 Score=112.45 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=56.0
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 14 y~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
++ +||.|.+.+..+.+. +..++.||||+|||++++.++....... .. +++|.+||+++..|+.+++.+.
T Consensus 112 ~~-l~~~Q~~ai~~~l~~----~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~-~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 112 IE-PHWYQKDAVFEGLVN----RRRILNLPTSAGRSLIQALLARYYLENY--EG-KILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CC-CCHHHHHHHHHHHHH----SEEEECCCTTSCHHHHHHHHHHHHHHHC--SS-EEEEECSSHHHHHHHHHHHHHH
T ss_pred cC-ccHHHHHHHHHHHhc----CCeEEEcCCCCCcHHHHHHHHHHHHHcC--CC-eEEEEECCHHHHHHHHHHHHHh
Confidence 45 599999988876543 4578899999999999988876655432 35 8999999999999999988875
No 56
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.09 E-value=8.9e-09 Score=114.27 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=56.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
.++.| +|.|..-+-.+ .+|+ ++||+||+|||+++++|++..+.. ++ +|.|.|+|..|..|..+++..+.
T Consensus 108 lG~rP-~~VQ~~~ip~L----l~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~-~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 108 LDQRP-FDVQVMGAAAL----HLGN--VAEMKTGEGKTLTCVLPAYLNALA---GN-GVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HSCCC-CHHHHHHHHHH----HTTE--EEECCTTSCHHHHTHHHHHHHHTT---TS-CEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCCC-CHHHHHHHHhH----hcCC--EEEecCCCccHHHHHHHHHHHHHh---CC-CeEEEeCCHHHHHHHHHHHHHHH
Confidence 35654 89998766543 3454 999999999999999998765542 56 89999999999999999888875
Q ss_pred hh
Q 006790 92 NY 93 (631)
Q Consensus 92 ~~ 93 (631)
++
T Consensus 177 ~~ 178 (922)
T 1nkt_A 177 RF 178 (922)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 57
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.06 E-value=1.7e-09 Score=119.64 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=55.0
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhhh
Q 006790 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHN 92 (631)
Q Consensus 13 py~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~~ 92 (631)
+..| +|.|..-+-.+ .+|+ +.||+||+|||+++++|++..+. .++ ++.|.|+|..|..|..+.+..+.+
T Consensus 72 g~~p-~~VQ~~~i~~l----l~G~--Iaem~TGsGKTlaf~LP~l~~~l---~g~-~vlVltPTreLA~Q~~e~~~~l~~ 140 (853)
T 2fsf_A 72 GMRH-FDVQLLGGMVL----NERC--IAEMRTGEGKTLTATLPAYLNAL---TGK-GVHVVTVNDYLAQRDAENNRPLFE 140 (853)
T ss_dssp SCCC-CHHHHHHHHHH----HSSE--EEECCTTSCHHHHHHHHHHHHHT---TSS-CCEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCC-ChHHHhhcccc----cCCe--eeeecCCchHHHHHHHHHHHHHH---cCC-cEEEEcCCHHHHHHHHHHHHHHHH
Confidence 3444 88888766533 3455 99999999999999999875543 246 899999999999999998888754
Q ss_pred h
Q 006790 93 Y 93 (631)
Q Consensus 93 ~ 93 (631)
+
T Consensus 141 ~ 141 (853)
T 2fsf_A 141 F 141 (853)
T ss_dssp H
T ss_pred h
Confidence 3
No 58
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.05 E-value=5.4e-10 Score=130.04 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=61.3
Q ss_pred EeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHH
Q 006790 9 TVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (631)
Q Consensus 9 ~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~ 88 (631)
.-.|||+ ++|.|.+.+..+ .+++++++.||||+|||++|++|++.... . +. +++|.+||++|..|..+++.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l----~~g~~vLV~apTGSGKTlva~lai~~~l~-~--g~-rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLK-N--KQ-RVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHH----HHTCEEEEECCTTSCHHHHHHHHHHHHHH-T--TC-EEEEEESSHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHhc-c--CC-eEEEECChHHHHHHHHHHHH
Confidence 3468998 499999988764 45788999999999999999988765543 2 46 99999999999999999888
Q ss_pred hh
Q 006790 89 LL 90 (631)
Q Consensus 89 ~l 90 (631)
..
T Consensus 151 ~~ 152 (1010)
T 2xgj_A 151 AE 152 (1010)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 59
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.02 E-value=6.1e-10 Score=121.39 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=58.6
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 13 py~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
+|++ ||.|.+.+..+.+ +..+++.+|||+|||++++.++....... +. +++|.+||++|..|+.+++.++
T Consensus 111 ~~~l-~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~-~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 111 RIEP-HWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EG-KILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp EECC-CHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC--SS-EEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCC-CHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CC-eEEEEECcHHHHHHHHHHHHHh
Confidence 5675 9999999888764 36789999999999999999877665433 35 8999999999999999988764
No 60
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.01 E-value=1.2e-09 Score=106.09 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=53.7
Q ss_pred eeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHh
Q 006790 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (631)
Q Consensus 10 ~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~ 89 (631)
..|++++ |+.|.+.+..+. +++.+++.+|||+|||++++.++... ++ +++|.++|.++..|+.+++.+
T Consensus 88 ~~~~~~l-~~~Q~~ai~~~~----~~~~~ll~~~tG~GKT~~a~~~~~~~------~~-~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 88 FDAEISL-RDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------ST-PTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCCCC-CHHHHHHHHHHT----TTSEEEEEESSSTTHHHHHHHHHHHS------CS-CEEEEESSHHHHHHHHHHHGG
T ss_pred ccCCCCc-CHHHHHHHHHHH----hCCCEEEEeCCCCCHHHHHHHHHHHc------CC-CEEEEeCCHHHHHHHHHHHHh
Confidence 3455664 999999887643 34569999999999999988775432 35 899999999999999887765
No 61
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.01 E-value=4.1e-10 Score=127.91 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=61.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
++|..+||.|.+.+..+ +.+++++++.||||+|||+++.+|++...... +. +++|.+||+++..|+.++++++
T Consensus 19 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~-~~l~i~P~raLa~q~~~~~~~l 91 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GG-KAVYIVPLKALAEEKFQEFQDW 91 (720)
T ss_dssp TTCCBCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CS-EEEEECSSGGGHHHHHHHTGGG
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CC-EEEEEcCcHHHHHHHHHHHHHH
Confidence 68877899999988752 34578999999999999999999988665433 46 9999999999999999988654
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.98 E-value=9.3e-10 Score=118.65 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=56.0
Q ss_pred eeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHh
Q 006790 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (631)
Q Consensus 10 ~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~ 89 (631)
..||+++ ||.|.+.+..+. +++.+++.+|||+|||++|+.++... ++ +++|.+||+++..|+.+++.+
T Consensus 88 ~~~~~~l-~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i~~~------~~-~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 88 FDAEISL-RDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------ST-PTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCCCCCB-CHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHHHHH------CS-CEEEEESSHHHHHHHHHHGGG
T ss_pred ccCCCCc-CHHHHHHHHHHH----hcCCEEEEeCCCCCHHHHHHHHHHHc------CC-CEEEEECCHHHHHHHHHHHHh
Confidence 4567775 999999887654 34569999999999999999986543 35 899999999999999987776
No 63
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.93 E-value=3.6e-08 Score=111.80 Aligned_cols=104 Identities=9% Similarity=0.071 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhcc-cCCcEEEEecchHHHHHHHHHHhhcchHHHH----h-cCCeEEEeCCCch--hhHHHHHHHHH
Q 006790 515 GVARNYGKLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEI----M-QHKLVFIETQDVV--ETTLALDNYRK 586 (631)
Q Consensus 515 ~~~~~l~~~i~~~~~~-~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l----~-~~~~v~~e~~~~~--~~~~~l~~fk~ 586 (631)
++.....+.+.++... .+|.+|||+++....+.+++.+.... ..+ . ....+..=..+.. +...+++.|+.
T Consensus 285 ~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~--~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~ 362 (773)
T 2xau_A 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEG--DQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPE 362 (773)
T ss_dssp CHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCC
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHH--HhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccc
Confidence 4555566666666544 47899999999999999999887420 011 0 1112222223221 12223333320
Q ss_pred h-hcCCCCeEEEEEecCcccccccCCCCCceEEEEEccc
Q 006790 587 A-CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624 (631)
Q Consensus 587 ~-~~~~~~aILfgv~~Gsf~EGIDf~g~~lr~VII~gLP 624 (631)
. -..|...||+|+ ..+..|||+|| .+.||-.|+|
T Consensus 363 ~~~~~g~~kVlVAT--~iae~GidIp~--v~~VId~g~~ 397 (773)
T 2xau_A 363 SHNGRPGRKVVIST--NIAETSLTIDG--IVYVVDPGFS 397 (773)
T ss_dssp CSSSSCCEEEEEEC--THHHHTCCCTT--EEEEEECSEE
T ss_pred ccCCCCceEEEEeC--cHHHhCcCcCC--eEEEEeCCCc
Confidence 0 004667899998 78999999984 7889988873
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.91 E-value=2.2e-09 Score=119.11 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHHHHHhcC-CcEEEecCCCChhHHHHHHHHHHHHhhC------CCCCceEEEEecchhhHHHHH
Q 006790 17 IYPEQYSYMLELKRALDAK-GHCLLEMPTGTGKTIALLSLITSYVLSK------PENPVKLIYCTRTVHEMEKTL 84 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~-~~~~iEapTGtGKTla~L~~~l~~~~~~------~~~~~~vi~~t~T~~l~~Q~~ 84 (631)
+||.|.+.+..+.+++.++ +.+++.+|||+|||++++..+....... ..++ +|+|.++|.+|..|+.
T Consensus 179 lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~-~vlil~P~~~L~~Q~~ 252 (590)
T 3h1t_A 179 PRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKP-RILFLADRNVLVDDPK 252 (590)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCC-CEEEEEC---------
T ss_pred chHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCC-eEEEEeCCHHHHHHHH
Confidence 5999999999999999876 4689999999999999776543333321 0346 9999999999999987
No 65
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.85 E-value=5.2e-07 Score=98.18 Aligned_cols=154 Identities=11% Similarity=0.047 Sum_probs=89.2
Q ss_pred ccccHHHhhccCEEEEecCCCCCc-cchhhhcCCCCccccccceeecCCceeeEEeeeCCCCcceeeeeccCCCHHHHHH
Q 006790 441 SLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARN 519 (631)
Q Consensus 441 ~~~l~~l~~~~~svIltSaTL~p~-~~f~~~lG~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~s~f~~r~~~~~~~~ 519 (631)
+..++.+|..+..+.-+|||+.+. ..|.+..|++-.. .|..-|.... .. ...-+.+..+-...
T Consensus 399 ~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~---IPtnkp~~R~------------d~-~d~vy~t~~eK~~a 462 (822)
T 3jux_A 399 TITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVV---IPTHKPMIRK------------DH-DDLVFRTQKEKYEK 462 (822)
T ss_dssp EECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEE---CCCSSCCCCE------------EC-CCEEESSHHHHHHH
T ss_pred HHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEE---ECCCCCccee------------ec-CcEEEecHHHHHHH
Confidence 345688999999999999999875 4666777764211 1110000000 00 00112233333344
Q ss_pred HHHHHHHhhcccCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCCchhhHHHHHHHHHhhcCCCCeEEEEE
Q 006790 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599 (631)
Q Consensus 520 l~~~i~~~~~~~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~~~~~~~~l~~fk~~~~~~~~aILfgv 599 (631)
+.+.|.... ..+..+|||++|-+..+.+...++..++- -.++ ..+...++..+-.+ .. .+++|++|+
T Consensus 463 l~~~I~~~~-~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~------~~vL--hgkq~~rE~~ii~~--ag--~~g~VtVAT 529 (822)
T 3jux_A 463 IVEEIEKRY-KKGQPVLVGTTSIEKSELLSSMLKKKGIP------HQVL--NAKYHEKEAEIVAK--AG--QKGMVTIAT 529 (822)
T ss_dssp HHHHHHHHH-HHTCCEEEEESSHHHHHHHHHHHHTTTCC------CEEE--CSCHHHHHHHHHHH--HH--STTCEEEEE
T ss_pred HHHHHHHHh-hCCCCEEEEECCHHHHHHHHHHHHHCCCC------EEEe--eCCchHHHHHHHHh--CC--CCCeEEEEc
Confidence 555444432 23567999999999999999999876431 1222 22222223222222 11 256899999
Q ss_pred ecCcccccccCC-CCCc-----eEEEEEcccC
Q 006790 600 ARGKVAEGIDFD-RHYG-----RLVIMFGVPF 625 (631)
Q Consensus 600 ~~Gsf~EGIDf~-g~~l-----r~VII~gLPf 625 (631)
.-.+.|+|++ |... -.||-+-+|-
T Consensus 530 --dmAgRGtDI~lg~~V~~~GglhVInte~Pe 559 (822)
T 3jux_A 530 --NMAGRGTDIKLGPGVAELGGLCIIGTERHE 559 (822)
T ss_dssp --TTTTTTCCCCCCTTTTTTTSCEEEESSCCS
T ss_pred --chhhCCcCccCCcchhhcCCCEEEecCCCC
Confidence 7899999997 3333 3788877774
No 66
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.83 E-value=6.1e-09 Score=126.85 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=61.8
Q ss_pred CC-CCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhC--------CCCCceEEEEecchhhHHH
Q 006790 12 FP-YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK--------PENPVKLIYCTRTVHEMEK 82 (631)
Q Consensus 12 Fp-y~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~--------~~~~~~vi~~t~T~~l~~Q 82 (631)
|| |+.+.+.|.+.... ++..++++++-||||+|||+++.+|.+...... .++. |++|.+||++|..|
T Consensus 74 f~g~~~ln~iQs~~~~~---al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~-k~lyiaP~kALa~e 149 (1724)
T 4f92_B 74 FEGFKTLNRIQSKLYRA---ALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF-KIIYIAPMRSLVQE 149 (1724)
T ss_dssp CTTCSBCCHHHHHTHHH---HHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSC-EEEEECSSHHHHHH
T ss_pred cCCCCCCCHHHHHHHHH---HHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCC-EEEEECCHHHHHHH
Confidence 65 88889999886654 567788999999999999999999987765432 1245 99999999999999
Q ss_pred HHHHHHhh
Q 006790 83 TLAELKLL 90 (631)
Q Consensus 83 ~~~el~~l 90 (631)
..+++.+.
T Consensus 150 ~~~~l~~~ 157 (1724)
T 4f92_B 150 MVGSFGKR 157 (1724)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.79 E-value=2.3e-08 Score=108.60 Aligned_cols=71 Identities=14% Similarity=0.050 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
+||.|.+.+..+......+..+++-+|||+|||+..+..+... ......+ +++|.+|+ ++..|+.+|+++.
T Consensus 38 L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~-~~~~~~~-~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 38 LRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDA-KKENELT-PSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHH-HHTTCCS-SEEEEECS-TTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHH-HhcCCCC-CEEEEccH-HHHHHHHHHHHHH
Confidence 5999999998887777777889999999999999987654333 3333345 78888894 6889999999875
No 68
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.77 E-value=1.6e-08 Score=117.24 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=58.3
Q ss_pred CChHHHHHHHHHHHHHhcC----------CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHH
Q 006790 17 IYPEQYSYMLELKRALDAK----------GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~----------~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~e 86 (631)
+||.|.+.+..+.+++.++ +.+++.+|||||||+++ ++++..+...+... +|+|.|+|..|..|+.++
T Consensus 272 ~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~-rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 272 MRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFID-KVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCC-EEEEEECGGGCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCc-eEEEEeCcHHHHHHHHHH
Confidence 5999999999999987642 57899999999999998 44445444333335 999999999999999988
Q ss_pred HHhh
Q 006790 87 LKLL 90 (631)
Q Consensus 87 l~~l 90 (631)
+..+
T Consensus 350 f~~f 353 (1038)
T 2w00_A 350 YQRF 353 (1038)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8764
No 69
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.58 E-value=6.7e-08 Score=112.57 Aligned_cols=82 Identities=13% Similarity=0.252 Sum_probs=61.4
Q ss_pred ccCCcEEEEecchHHHHHHHHHHhhc-chHHHHhcCCeEEEeCC-CchhhHHHHHHHHHhhcCCC--CeEEEEEecCccc
Q 006790 530 IVPDGIVCFFVSYSYMDEIIATWNDS-GILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGR--GAVFFSVARGKVA 605 (631)
Q Consensus 530 ~~~gg~LVfF~Sy~~l~~v~~~~~~~-~~~~~l~~~~~v~~e~~-~~~~~~~~l~~fk~~~~~~~--~aILfgv~~Gsf~ 605 (631)
..++.++||+.+-...+.+.+.++.. + .+...+-+. ...++..++++|++ ++ -.||+++ ...+
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~~g-------~~~~~lhG~~~~~~R~~~l~~F~~----g~~~~~vLvaT--~v~~ 567 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLREREG-------IRAAVFHEGMSIIERDRAAAWFAE----EDTGAQVLLCS--EIGS 567 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTTTC-------CCEEEECTTSCTTHHHHHHHHHHS----TTSSCEEEECS--CCTT
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhC----CCCcccEEEec--chhh
Confidence 34678999999999999999998742 2 233334333 23456778888886 44 6788877 7899
Q ss_pred ccccCCCCCceEEEEEcccCC
Q 006790 606 EGIDFDRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 606 EGIDf~g~~lr~VII~gLPfp 626 (631)
+|||+++ +..||+..+|+.
T Consensus 568 ~GlDl~~--~~~VI~~d~p~~ 586 (968)
T 3dmq_A 568 EGRNFQF--ASHMVMFDLPFN 586 (968)
T ss_dssp CSSCCTT--CCEEECSSCCSS
T ss_pred cCCCccc--CcEEEEecCCCC
Confidence 9999997 889999999864
No 70
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.57 E-value=1.3e-07 Score=104.85 Aligned_cols=70 Identities=16% Similarity=0.077 Sum_probs=56.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
.+|.| ++.|...+-.+ -+|+ +.||.||+|||+++++|++..+.. ++ +|.|.|+|..|..|..+.+..+.
T Consensus 76 lG~~P-t~VQ~~~ip~L----lqG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~-qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGMRH-FDVQLIGGAVL----HEGK--IAEMKTGEGKTLVATLAVALNALT---GK-GVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCCCC-CHHHHHHHHHH----HTTS--EEECCSTHHHHHHHHHHHHHHHTT---CS-CCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCCC-cHHHHhhcccc----cCCc--eeeccCCCchHHHHHHHHHHHHHh---CC-CEEEEeCCHHHHHHHHHHHHHHH
Confidence 46754 89998877543 3455 999999999999999998655442 56 89999999999999999888875
Q ss_pred h
Q 006790 92 N 92 (631)
Q Consensus 92 ~ 92 (631)
+
T Consensus 145 ~ 145 (997)
T 2ipc_A 145 R 145 (997)
T ss_dssp H
T ss_pred H
Confidence 4
No 71
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.55 E-value=1.8e-07 Score=90.66 Aligned_cols=69 Identities=9% Similarity=0.128 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCC-CCceEEEEecchhhHHHHHHHHHh
Q 006790 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE-NPVKLIYCTRTVHEMEKTLAELKL 89 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~-~~~~vi~~t~T~~l~~Q~~~el~~ 89 (631)
.++.|.+.+..+ .+++.+++.||||+|||.++..+.+......+. ...++++..+|..+..|+.+.+..
T Consensus 62 ~~~~q~~~i~~i----~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 62 VKKFESEILEAI----SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGGGHHHHHHHH----HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 378888777654 567899999999999999888877665443321 122899999999999998775554
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.53 E-value=2.3e-07 Score=106.23 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
..||.|.+.+..+.....++..+++-.+||.|||+..+..+.......+..+ +++|.+| .+++.|+.+|+.+.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~-~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNG-PHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCS-CEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCC-CEEEEEC-chHHHHHHHHHHHH
Confidence 3699999999999988889999999999999999988775433322222245 7788888 67889999999886
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.38 E-value=1.4e-06 Score=97.15 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHHHHHh-----cCCcEEEecCCCChhHHHHHHHHHHHHhhCC----CCCceEEEEecchhhHHHHHHHH
Q 006790 17 IYPEQYSYMLELKRALD-----AKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAEL 87 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~-----~~~~~~iEapTGtGKTla~L~~~l~~~~~~~----~~~~~vi~~t~T~~l~~Q~~~el 87 (631)
.||.|++.+..+.+.+. ++..+++-.+||+|||+..+..+.......+ ..+ +++|.+|+ ++..|+.+|+
T Consensus 56 LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~-~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 56 LRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEID-KVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCS-CEEEEECH-HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCC-cEEEEecH-HHHHHHHHHH
Confidence 59999999999988874 4456899999999999988876554444332 124 68888887 8899999999
Q ss_pred Hhhh
Q 006790 88 KLLH 91 (631)
Q Consensus 88 ~~l~ 91 (631)
.+..
T Consensus 134 ~~~~ 137 (644)
T 1z3i_X 134 GKWL 137 (644)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 8864
No 74
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.19 E-value=9.5e-06 Score=90.54 Aligned_cols=66 Identities=23% Similarity=0.360 Sum_probs=49.6
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHh
Q 006790 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~ 89 (631)
.-+.|++ +|..++..+...+|.+|+|||||....- .+.+.... +. +|+++|+|+.-.+++++-|..
T Consensus 190 LN~~Q~~---AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~~--~~-~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKE---AVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVKQ--GL-KVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHH---HHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHHT--TC-CEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHH---HHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHhC--CC-eEEEEcCchHHHHHHHHHHHh
Confidence 4578887 4556677777999999999999975433 34444443 56 999999999999999875543
No 75
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.09 E-value=1.1e-06 Score=93.94 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=48.9
Q ss_pred HHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHH
Q 006790 28 LKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (631)
Q Consensus 28 v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~ 88 (631)
..+++.+++++++.||||+|||++|++|++..+... +. +++|.+||+++..|+.+.++
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~-~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RL-RTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TC-CEEEEECSHHHHHHHHHHTT
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CC-cEEEECchHHHHHHHHHHhc
Confidence 356778889999999999999999999988766544 45 89999999999999987554
No 76
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.00 E-value=2e-06 Score=91.34 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=47.4
Q ss_pred HHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHh
Q 006790 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (631)
Q Consensus 31 ~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~ 89 (631)
++.+++++++.||||+|||++|+.|++..+... +. +++|.+||.+|..|+.+.++.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~-~~lil~Ptr~La~Q~~~~l~~ 59 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RL-RTLVLAPTRVVLSEMKEAFHG 59 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTTT
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CC-eEEEEcchHHHHHHHHHHHhc
Confidence 456788999999999999999999988765544 45 899999999999999886654
No 77
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.99 E-value=1.2e-06 Score=93.36 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=51.6
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHH
Q 006790 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (631)
Q Consensus 14 y~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~ 88 (631)
|..+.|.|. . +-.++..++++++.||||+|||++|++|++..+... +. +++|.+||+++..|+.++++
T Consensus 2 ~~q~~~iq~-~---i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~-~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 2 SAMGEPDYE-V---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RL-RTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCSCCCC-C---CGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCcHH-H---HHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CC-cEEEECCCHHHHHHHHHHhc
Confidence 344456663 2 333455566779999999999999999988766554 46 89999999999999987553
No 78
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.96 E-value=7.3e-07 Score=99.22 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=53.4
Q ss_pred CCChHHH-----HHHHHHH--HHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHH
Q 006790 16 NIYPEQY-----SYMLELK--RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (631)
Q Consensus 16 ~~r~~Q~-----~~~~~v~--~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~ 88 (631)
.++|.|. +.+..+. +++.+++++++.||||+|||++|++|++..+... +. +++|.+||++|..|+.+.++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~-~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RL-RTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CC-cEEEEccHHHHHHHHHHHHh
Confidence 3567777 4444333 3445788999999999999999999988765543 45 89999999999999987665
Q ss_pred h
Q 006790 89 L 89 (631)
Q Consensus 89 ~ 89 (631)
.
T Consensus 292 ~ 292 (673)
T 2wv9_A 292 G 292 (673)
T ss_dssp T
T ss_pred c
Confidence 3
No 79
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.89 E-value=7.1e-06 Score=86.83 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=43.0
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHH
Q 006790 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~ 88 (631)
++++++.||||+|||++|+.|++..+... +. +++|.+||.++.+|+.+.++
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~-~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK--RL-RTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CC-CEEEECcHHHHHHHHHHHhC
Confidence 67899999999999999999988555544 46 89999999999999876543
No 80
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.84 E-value=0.00011 Score=81.39 Aligned_cols=66 Identities=17% Similarity=0.268 Sum_probs=47.9
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHh
Q 006790 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~ 89 (631)
..+.|.+.+..+. .+...+|.||+|||||..... .+...... .+. +|+++++|+...+++.+.+..
T Consensus 181 ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~-~i~~l~~~-~~~-~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNG-PVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHH-HHHHHHTS-SSC-CEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHH-HHHHHHHc-CCC-eEEEEeCcHHHHHHHHHHHHh
Confidence 4788988776653 356899999999999985433 23333222 246 899999999999999876654
No 81
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.79 E-value=9.7e-06 Score=89.49 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHH
Q 006790 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~ 88 (631)
+.|.|.. . ...+.+++++++.||||+|||++|++|++...... +. +++|.+||+++..|+.+.++
T Consensus 172 ~lpiq~~---~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~-~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 172 GEPDYEV---D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RL-RTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp CCCCCCC---C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTT
T ss_pred CCCcccc---C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CC-eEEEEcChHHHHHHHHHHhc
Confidence 3455544 1 55677789999999999999999999988776553 45 89999999999999987654
No 82
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.56 E-value=0.00038 Score=78.91 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHh
Q 006790 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~ 89 (631)
.-+.|.+.+..+ +. +...+|.||+|||||..... .+.+.... .+. +|+++++|+...+++.+.+..
T Consensus 357 Ln~~Q~~Av~~~---l~-~~~~lI~GppGTGKT~ti~~-~i~~l~~~-~~~-~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTV---LQ-RPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNG-PVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHH---HT-SSEEEEECCTTSCHHHHHHH-HHHHHHTT-CSS-CEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHh---cc-CCeEEEEcCCCCCHHHHHHH-HHHHHHHc-CCC-cEEEEcCcHHHHHHHHHHHHH
Confidence 468898876654 33 56899999999999985433 23333322 246 899999999999998876654
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.51 E-value=0.00035 Score=63.11 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=61.4
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCC-CchhhHHHHHHHHHhhcCCCCeEEEEEecCccccccc
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~-~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGID 609 (631)
.++.+|||++|.+..+.+++.++..++ ....+-+. ...++...++.|++ |+..||+++ ..+++|+|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T--~~~~~G~d 95 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKF-------TVSAIYSDLPQQERDTIMKEFRS----GSSRILIST--DLLARGID 95 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT----TSCSEEEEE--GGGTTTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCC-------CEEEEECCCCHHHHHHHHHHHHc----CCCEEEEEc--ChhhcCCC
Confidence 357899999999999999999876431 22333222 23345667788875 577899999 79999999
Q ss_pred CCCCCceEEEEEcccCCC
Q 006790 610 FDRHYGRLVIMFGVPFQY 627 (631)
Q Consensus 610 f~g~~lr~VII~gLPfp~ 627 (631)
+|+ ++.||..++|...
T Consensus 96 ~~~--~~~Vi~~~~p~~~ 111 (165)
T 1fuk_A 96 VQQ--VSLVINYDLPANK 111 (165)
T ss_dssp CCS--CSEEEESSCCSSG
T ss_pred ccc--CCEEEEeCCCCCH
Confidence 995 7889999988753
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.46 E-value=0.00029 Score=65.31 Aligned_cols=89 Identities=25% Similarity=0.355 Sum_probs=66.7
Q ss_pred HHHHhhcccCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCC-CchhhHHHHHHHHHhhcCCCCeEEEEEec
Q 006790 523 LLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVAR 601 (631)
Q Consensus 523 ~i~~~~~~~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~-~~~~~~~~l~~fk~~~~~~~~aILfgv~~ 601 (631)
.|.+++...++.+|||+++....+.+++.++..+ .....+-+. ...++...+++|++ |+-.||+++
T Consensus 45 ~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g-------~~~~~lhg~~~~~~R~~~l~~F~~----g~~~vLvaT-- 111 (191)
T 2p6n_A 45 YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKG-------VEAVAIHGGKDQEERTKAIEAFRE----GKKDVLVAT-- 111 (191)
T ss_dssp HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHT-------CCEEEECTTSCHHHHHHHHHHHHH----TSCSEEEEC--
T ss_pred HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhc----CCCEEEEEc--
Confidence 4555666667899999999999999999987542 133333332 23456678888887 567899998
Q ss_pred CcccccccCCCCCceEEEEEcccCC
Q 006790 602 GKVAEGIDFDRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 602 Gsf~EGIDf~g~~lr~VII~gLPfp 626 (631)
..+++|+|+|+ ++.||...+|..
T Consensus 112 ~~~~~Gldi~~--v~~VI~~d~p~~ 134 (191)
T 2p6n_A 112 DVASKGLDFPA--IQHVINYDMPEE 134 (191)
T ss_dssp HHHHTTCCCCC--CSEEEESSCCSS
T ss_pred CchhcCCCccc--CCEEEEeCCCCC
Confidence 78999999986 778999888853
No 85
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.42 E-value=0.001 Score=59.80 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=61.3
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCC-CchhhHHHHHHHHHhhcCCCCeEEEEEecCccccccc
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~-~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGID 609 (631)
.++.+|||++|....+.+++.++..++ ....+-+. ...++...+++|++ |+-.||+++ ..+++|+|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~r~~~~~~f~~----g~~~vlv~T--~~~~~Gld 100 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGY-------PCDKIHGGMIQEDRFDVMNEFKR----GEYRYLVAT--DVAARGID 100 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT----TSCSEEEEC--GGGTTTCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEC--ChhhcCCc
Confidence 456899999999999999999876431 23333332 23455667788876 567899988 79999999
Q ss_pred CCCCCceEEEEEcccCC
Q 006790 610 FDRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 610 f~g~~lr~VII~gLPfp 626 (631)
+|+ ++.||..++|..
T Consensus 101 ~~~--~~~Vi~~~~p~~ 115 (163)
T 2hjv_A 101 IEN--ISLVINYDLPLE 115 (163)
T ss_dssp CSC--CSEEEESSCCSS
T ss_pred hhc--CCEEEEeCCCCC
Confidence 996 788999998864
No 86
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.38 E-value=0.00061 Score=62.12 Aligned_cols=88 Identities=16% Similarity=0.323 Sum_probs=64.4
Q ss_pred HHHHhhccc-CCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCC-CchhhHHHHHHHHHhhcCCCCeEEEEEe
Q 006790 523 LLVEMVSIV-PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVA 600 (631)
Q Consensus 523 ~i~~~~~~~-~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~-~~~~~~~~l~~fk~~~~~~~~aILfgv~ 600 (631)
.+.++++.. ++.+|||++|....+.+++.+...++ ....+-+. ...++...++.|++ |+-.||+++
T Consensus 24 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~R~~~~~~f~~----g~~~vLvaT- 91 (175)
T 2rb4_A 24 ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGH-------QVSLLSGELTVEQRASIIQRFRD----GKEKVLITT- 91 (175)
T ss_dssp HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTC-------CEEEECSSCCHHHHHHHHHHHHT----TSCSEEEEC-
T ss_pred HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEe-
Confidence 344444444 46799999999999999999876431 23333232 23345667788875 577899999
Q ss_pred cCcccccccCCCCCceEEEEEcccC
Q 006790 601 RGKVAEGIDFDRHYGRLVIMFGVPF 625 (631)
Q Consensus 601 ~Gsf~EGIDf~g~~lr~VII~gLPf 625 (631)
..+++|||+|+ ++.||..++|+
T Consensus 92 -~~~~~Gid~~~--~~~Vi~~d~p~ 113 (175)
T 2rb4_A 92 -NVCARGIDVKQ--VTIVVNFDLPV 113 (175)
T ss_dssp -CSCCTTTCCTT--EEEEEESSCCC
T ss_pred -cchhcCCCccc--CCEEEEeCCCC
Confidence 78999999997 88999999984
No 87
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.19 E-value=0.00099 Score=61.37 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=51.5
Q ss_pred CCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCC-CchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccC
Q 006790 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (631)
Q Consensus 532 ~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~-~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf 610 (631)
++.+|||+++....+.+++.++..++ ....+-+. ...++...+++|++ |+-.||+++ ..+++|+|+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g~-------~~~~lhg~~~~~~r~~~~~~f~~----g~~~vLvaT--~~~~~Gldi 112 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEGY-------ACTSIHGDRSQRDREEALHQFRS----GKSPILVAT--AVAARGLDI 112 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTTC-------CEEEEC--------CHHHHHHHH----TSSSEEEEE--C------CC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCC-------ceEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEc--ChhhcCCCc
Confidence 56799999999999999999876431 22233222 22345667888886 577899999 789999999
Q ss_pred CCCCceEEEEEcccC
Q 006790 611 DRHYGRLVIMFGVPF 625 (631)
Q Consensus 611 ~g~~lr~VII~gLPf 625 (631)
|+ ++.||...+|.
T Consensus 113 ~~--~~~VI~~d~p~ 125 (185)
T 2jgn_A 113 SN--VKHVINFDLPS 125 (185)
T ss_dssp CS--BSEEEESSCCS
T ss_pred cc--CCEEEEeCCCC
Confidence 96 77899988875
No 88
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.16 E-value=0.00096 Score=60.64 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=60.2
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCC-CchhhHHHHHHHHHhhcCCCCeEEEEEecCccccccc
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~-~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGID 609 (631)
.++.+|||++|....+.+++.+...++ ....+-+. ...++...++.|++ |+-.||+++ ..+++|+|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~r~~~~~~f~~----g~~~vLvaT--~~~~~Gld 96 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNF-------PAIAIHRGMPQEERLSRYQQFKD----FQRRILVAT--NLFGRGMD 96 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT----TSCSEEEES--SCCSTTCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC-------CEEEEECCCCHHHHHHHHHHHHC----CCCcEEEEC--CchhcCcc
Confidence 346799999999999999999976431 23333232 22345667888875 577899988 78999999
Q ss_pred CCCCCceEEEEEcccC
Q 006790 610 FDRHYGRLVIMFGVPF 625 (631)
Q Consensus 610 f~g~~lr~VII~gLPf 625 (631)
+|+ ++.||..++|.
T Consensus 97 i~~--~~~Vi~~d~p~ 110 (172)
T 1t5i_A 97 IER--VNIAFNYDMPE 110 (172)
T ss_dssp GGG--CSEEEESSCCS
T ss_pred hhh--CCEEEEECCCC
Confidence 985 78899988885
No 89
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.03 E-value=0.00029 Score=77.44 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=44.4
Q ss_pred HHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHh
Q 006790 28 LKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (631)
Q Consensus 28 v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~ 89 (631)
+..++.+++++++.||||+|||.+++.|.+. . +. +++|.+||+.+..|+.+.+.+
T Consensus 225 i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----~--g~-~vLVl~PTReLA~Qia~~l~~ 279 (666)
T 3o8b_A 225 PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA----Q--GY-KVLVLNPSVAATLGFGAYMSK 279 (666)
T ss_dssp CCCCCSSCEEEEEECCTTSCTTTHHHHHHHH----T--TC-CEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEeCCchhHHHHHHHHHHH----C--CC-eEEEEcchHHHHHHHHHHHHH
Confidence 3445566788999999999999999988654 1 45 899999999999999875544
No 90
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.02 E-value=0.00043 Score=76.76 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=46.7
Q ss_pred eCCCCCCChHHHHHHHHH---------HHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHH
Q 006790 11 YFPYDNIYPEQYSYMLEL---------KRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEME 81 (631)
Q Consensus 11 ~Fpy~~~r~~Q~~~~~~v---------~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~ 81 (631)
.|||.. .+.|..-+..+ .+++ +++++++.||||+|||+..| ..+... + +.+|++||+++..
T Consensus 124 ~fp~~e-~~d~l~~i~dl~~p~~~~p~ar~l-~rk~vlv~apTGSGKT~~al----~~l~~~---~-~gl~l~PtR~LA~ 193 (677)
T 3rc3_A 124 IFPVLD-CKDDLRKISDLRIPPNWYPDARAM-QRKIIFHSGPTNSGKTYHAI----QKYFSA---K-SGVYCGPLKLLAH 193 (677)
T ss_dssp HCGGGG-CHHHHHHHTBCCCGGGGCHHHHTS-CCEEEEEECCTTSSHHHHHH----HHHHHS---S-SEEEEESSHHHHH
T ss_pred hCCCcC-CHHHHHHHhhccChhhhCHHHHhc-CCCEEEEEcCCCCCHHHHHH----HHHHhc---C-CeEEEeCHHHHHH
Confidence 467654 55555444322 2223 45689999999999999333 333322 4 5688899999999
Q ss_pred HHHHHHHh
Q 006790 82 KTLAELKL 89 (631)
Q Consensus 82 Q~~~el~~ 89 (631)
|+.+.+..
T Consensus 194 Qi~~~l~~ 201 (677)
T 3rc3_A 194 EIFEKSNA 201 (677)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 91
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=96.99 E-value=0.0018 Score=61.11 Aligned_cols=81 Identities=22% Similarity=0.323 Sum_probs=60.5
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCC-CchhhHHHHHHHHHhhcCCCCeEEEEEecCccccccc
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~-~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGID 609 (631)
.++.+|||+++....+.+++.+...+ .....+-+. ...++...++.|++ |+-.||+++ ..+.+|||
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~lhg~~~~~~r~~~~~~f~~----g~~~vlvaT--~~~~~Gid 96 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLG-------HPAQALHGDLSQGERERVLGAFRQ----GEVRVLVAT--DVAARGLD 96 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHT-------CCEEEECSSSCHHHHHHHHHHHHS----SSCCEEEEC--TTTTCSSS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcC-------CCEEEEECCCCHHHHHHHHHHHHC----CCCeEEEec--ChhhcCCC
Confidence 46899999999999999999987542 122233222 22345667788775 577899999 79999999
Q ss_pred CCCCCceEEEEEcccCC
Q 006790 610 FDRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 610 f~g~~lr~VII~gLPfp 626 (631)
+|+ ++.||..++|..
T Consensus 97 i~~--v~~Vi~~~~p~~ 111 (212)
T 3eaq_A 97 IPQ--VDLVVHYRLPDR 111 (212)
T ss_dssp CCC--BSEEEESSCCSS
T ss_pred Ccc--CcEEEECCCCcC
Confidence 985 778999888853
No 92
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.97 E-value=0.0026 Score=67.68 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=52.6
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCC-cEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHH
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~-~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~ 84 (631)
.+|...-++|++.+..+...+.++. +++|.||.|||||... ...+.+..... .. +|+++|+|....+.+-
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~-~~-~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG-ET-GIILAAPTHAAKKILS 91 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT-CC-CEEEEESSHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC-Cc-eEEEecCcHHHHHHHH
Confidence 4566678999999999999998876 9999999999999633 33444444442 24 7999999987665543
No 93
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=95.81 E-value=0.00021 Score=64.91 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=59.5
Q ss_pred CCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeC-CCchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccC
Q 006790 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET-QDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (631)
Q Consensus 532 ~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~-~~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf 610 (631)
++.+|||+++....+.+++.++..++ ....+-+ ....++...+++|++ |+-.||+++ ..+++|||+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~r~~~~~~f~~----g~~~vLvaT--~~~~~Gid~ 96 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGI-------NNCYLEGEMVQGKRNEAIKRLTE----GRVNVLVAT--DVAARGIDI 96 (170)
Confidence 46799999999999999999876432 1112211 122345567788876 567899999 789999999
Q ss_pred CCCCceEEEEEcccCCC
Q 006790 611 DRHYGRLVIMFGVPFQY 627 (631)
Q Consensus 611 ~g~~lr~VII~gLPfp~ 627 (631)
|+ ++.||..++|...
T Consensus 97 ~~--~~~Vi~~~~p~~~ 111 (170)
T 2yjt_D 97 PD--VSHVFNFDMPRSG 111 (170)
Confidence 97 7889999998654
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.62 E-value=0.0031 Score=69.49 Aligned_cols=67 Identities=16% Similarity=0.038 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEecCCCChhH--HHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKT--IALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKT--la~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
-+.|++.+..+. .++.+++.||+||||| ++++++.+.-.... .+. +|+++++|.....|+.+.+...
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-~~~-~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMADG-ERC-RIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-CCC-CEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-CCC-eEEEEeCChhHHHHHHHHHHHH
Confidence 467888766543 4678999999999999 77887765432111 245 8999999999999988766553
No 95
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.40 E-value=0.0011 Score=68.81 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=0.0
Q ss_pred CCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeC-CCchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccC
Q 006790 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET-QDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (631)
Q Consensus 532 ~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~-~~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf 610 (631)
++.+|||++|.+..+.+++.++..++ ....+-+ ....++...++.|++ |+..||+++ ..+++|||+
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~T--~~~~~Gldi 325 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDKF-------TVSAIYSDLPQQERDTIMKEFRS----GSSRILIST--DLLARGIDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCC-------eEEEeeCCCCHHHHHHHHHHHHC----CCCcEEEEC--ChhhcCCCc
Confidence 46899999999999999999876432 1111111 122344566777765 567899988 789999999
Q ss_pred CCCCceEEEEEcccCCC
Q 006790 611 DRHYGRLVIMFGVPFQY 627 (631)
Q Consensus 611 ~g~~lr~VII~gLPfp~ 627 (631)
|+ ++.||..+.|...
T Consensus 326 ~~--~~~Vi~~~~p~s~ 340 (394)
T 1fuu_A 326 QQ--VSLVINYDLPANK 340 (394)
T ss_dssp -----------------
T ss_pred cc--CCEEEEeCCCCCH
Confidence 95 7789999988653
No 96
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.25 E-value=0.011 Score=65.79 Aligned_cols=71 Identities=21% Similarity=0.104 Sum_probs=57.0
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCC-cEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 13 PYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 13 py~~~r~~Q~~~~~~v~~~l~~~~-~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
||+ |++.|-+.+..+.+.+.++. ..++.+.||+|||+.+. .+.... ++ +++|.|++..+..|+.+||+.+.
T Consensus 6 ~~~-~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a--~~~~~~----~~-~~lvv~~~~~~A~ql~~el~~~~ 77 (664)
T 1c4o_A 6 GPS-PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA--KVIEAL----GR-PALVLAPNKILAAQLAAEFRELF 77 (664)
T ss_dssp SCC-CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH--HHHHHH----TC-CEEEEESSHHHHHHHHHHHHHHC
T ss_pred CCC-CCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHH--HHHHHh----CC-CEEEEecCHHHHHHHHHHHHHHC
Confidence 565 49999999999999998875 46788999999999443 332221 35 79999999999999999999873
No 97
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=96.19 E-value=0.024 Score=56.20 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=61.1
Q ss_pred CCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCC-CchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccC
Q 006790 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (631)
Q Consensus 532 ~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~-~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf 610 (631)
++.+|||+++....+.+++.+...++ ....+-+. ...++...++.|+. |+..||+++ ..+.+|||+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g~-------~~~~lhg~l~~~~r~~~~~~f~~----g~~~vLVaT--~va~~Gidi 94 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLGH-------PAQALHGDMSQGERERVMGAFRQ----GEVRVLVAT--DVAARGLDI 94 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTTC-------CEEEECSCCCTHHHHHHHHHHHH----TSCCEEEEC--STTTCSTTC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCC-------CEEEEeCCCCHHHHHHHHHHhhc----CCceEEEEe--chhhcCccc
Confidence 78999999999999999999876431 22223222 22456677888887 577899999 799999999
Q ss_pred CCCCceEEEEEcccCC
Q 006790 611 DRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 611 ~g~~lr~VII~gLPfp 626 (631)
++ ++.||..++|..
T Consensus 95 ~~--v~~VI~~d~p~s 108 (300)
T 3i32_A 95 PQ--VDLVVHYRMPDR 108 (300)
T ss_dssp CC--CSEEEESSCCSS
T ss_pred cc--eeEEEEcCCCCC
Confidence 85 678999888864
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.012 Score=66.74 Aligned_cols=66 Identities=17% Similarity=0.284 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHh
Q 006790 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~ 89 (631)
.-+.|.+.+..+. .+...+|.||+|||||...... +.+....+ +. +|+++++|+...+++.+.|..
T Consensus 361 Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~~-i~~l~~~~-~~-~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSATI-VYHLSKIH-KD-RILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHHH-HHHHHHHH-CC-CEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHHH-HHHHHhCC-CC-eEEEEcCcHHHHHHHHHHHHh
Confidence 4689998776553 3567899999999999754332 22222211 46 899999999999999886654
No 99
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.96 E-value=0.0019 Score=69.14 Aligned_cols=80 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred CCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCCchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccCC
Q 006790 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFD 611 (631)
Q Consensus 532 ~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf~ 611 (631)
.+.+|||++|....+.+++.+...+.- -.++--.....++..+++.|++ |+..||+|+ ..+++|||+|
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~~~------v~~lh~~~~~~~R~~~~~~f~~----g~~~iLv~T--~~~~~GlDip 400 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEGHQ------VALLSGEMMVEQRAAVIERFRE----GKEKVLVTT--NVCARGIDVE 400 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCCcc------EEEecCCCCHHHHHHHHHHHHc----CCCcEEEEc--cccccCCccc
Confidence 468999999999999999988754320 0111111222345567788876 577899999 6899999999
Q ss_pred CCCceEEEEEcccC
Q 006790 612 RHYGRLVIMFGVPF 625 (631)
Q Consensus 612 g~~lr~VII~gLPf 625 (631)
+ ++.||..++|.
T Consensus 401 ~--v~~VI~~d~p~ 412 (479)
T 3fmp_B 401 Q--VSVVINFDLPV 412 (479)
T ss_dssp --------------
T ss_pred c--CCEEEEecCCC
Confidence 6 67788888885
No 100
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.72 E-value=0.017 Score=62.65 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhccc-CCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeC---------CCchhhHHHHHHHHH
Q 006790 517 ARNYGKLLVEMVSIV-PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRK 586 (631)
Q Consensus 517 ~~~l~~~i~~~~~~~-~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~---------~~~~~~~~~l~~fk~ 586 (631)
...+.+.|.+..... ++.+|||+++-...+.+++.++..+....+ +..++-+ ....++...+++|++
T Consensus 373 ~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 449 (555)
T 3tbk_A 373 LRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFL---KPGILTGRGRTNRATGMTLPAQKCVLEAFRA 449 (555)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTC---CEEECCC------------------------
T ss_pred HHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCce---eeeEEEecCCcccccccCHHHHHHHHHHHhc
Confidence 355666666655433 479999999999999999999875432111 1111111 111244567788876
Q ss_pred hhcCCCCeEEEEEecCcccccccCCCCCceEEEEEcccCCC
Q 006790 587 ACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQY 627 (631)
Q Consensus 587 ~~~~~~~aILfgv~~Gsf~EGIDf~g~~lr~VII~gLPfp~ 627 (631)
. |+-.||+++ ..++||||+| .+++||...+|..+
T Consensus 450 ~---g~~~vLvaT--~~~~~GlDlp--~v~~VI~~d~p~s~ 483 (555)
T 3tbk_A 450 S---GDNNILIAT--SVADEGIDIA--ECNLVILYEYVGNV 483 (555)
T ss_dssp -----CCSEEEEC--CCTTCCEETT--SCSEEEEESCCSSC
T ss_pred C---CCeeEEEEc--chhhcCCccc--cCCEEEEeCCCCCH
Confidence 2 456799988 7899999999 78999999998754
No 101
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.60 E-value=0.03 Score=62.16 Aligned_cols=76 Identities=18% Similarity=0.130 Sum_probs=60.7
Q ss_pred eEeeCCCCCCChHHHHHHHHHHHHHhcCC-cEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHH
Q 006790 8 VTVYFPYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (631)
Q Consensus 8 ~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~-~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~e 86 (631)
..+.=||+| +.-|.+.+..+.+.+.++. ..++-+.||+|||+ +++.+.... ++ +++|.|++..+..|+.+|
T Consensus 5 ~~~~~~~~p-~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~--~~a~~~~~~----~~-~~lvv~~~~~~A~~l~~e 76 (661)
T 2d7d_A 5 FELVSKYQP-QGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTF--TVSNLIKEV----NK-PTLVIAHNKTLAGQLYSE 76 (661)
T ss_dssp CCCCCSCCC-CTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHH--HHHHHHHHH----CC-CEEEECSSHHHHHHHHHH
T ss_pred ceeecCCCC-CCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHH--HHHHHHHHh----CC-CEEEEECCHHHHHHHHHH
Confidence 345568986 9999999999999998875 46788999999998 444333221 35 799999999999999999
Q ss_pred HHhhh
Q 006790 87 LKLLH 91 (631)
Q Consensus 87 l~~l~ 91 (631)
|+.+.
T Consensus 77 l~~~~ 81 (661)
T 2d7d_A 77 FKEFF 81 (661)
T ss_dssp HHHHC
T ss_pred HHHHc
Confidence 99873
No 102
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.60 E-value=0.014 Score=58.76 Aligned_cols=78 Identities=14% Similarity=0.309 Sum_probs=57.9
Q ss_pred cccCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCC-CchhhHHHHHHHHHhhcCCCCeEEEEEecCccccc
Q 006790 529 SIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEG 607 (631)
Q Consensus 529 ~~~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~-~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EG 607 (631)
+..++++|||++|.+..+.+++.++. ...+-+. ...++...+++|++ |+..||+++ ..+++|
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~~-----------~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~T--~~~~~G 279 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFDN-----------AIELRGDLPQSVRNRNIDAFRE----GEYDMLITT--DVASRG 279 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCTT-----------EEEECTTSCHHHHHHHHHHHHT----TSCSEEEEC--HHHHTT
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhhh-----------hhhhcCCCCHHHHHHHHHHHHc----CCCcEEEEc--CccccC
Confidence 35667899999999999988876642 1222222 22345667777775 577899998 689999
Q ss_pred ccCCCCCceEEEEEcccC
Q 006790 608 IDFDRHYGRLVIMFGVPF 625 (631)
Q Consensus 608 IDf~g~~lr~VII~gLPf 625 (631)
||+|+ ++.||..+.|.
T Consensus 280 id~~~--~~~Vi~~~~~~ 295 (337)
T 2z0m_A 280 LDIPL--VEKVINFDAPQ 295 (337)
T ss_dssp CCCCC--BSEEEESSCCS
T ss_pred CCccC--CCEEEEecCCC
Confidence 99985 78999988875
No 103
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=95.45 E-value=0.015 Score=65.42 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=62.6
Q ss_pred HHHHHHHhhccc--CCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCC---------CchhhHHHHHHHHHhh
Q 006790 520 YGKLLVEMVSIV--PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ---------DVVETTLALDNYRKAC 588 (631)
Q Consensus 520 l~~~i~~~~~~~--~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~---------~~~~~~~~l~~fk~~~ 588 (631)
+.+.|.+..... ++.+|||++|....+.+++.++....+... ..+...+-+. ...++..++++|++
T Consensus 386 L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~-g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~-- 462 (699)
T 4gl2_A 386 LRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEV-GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT-- 462 (699)
T ss_dssp SHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCcccccc-CcceEEEECCCCccCCCCCCHHHHHHHHHHHhc--
Confidence 334444433333 578999999999999999999864110000 0122222222 22345667777765
Q ss_pred cCCCCeEEEEEecCcccccccCCCCCceEEEEEcccCC
Q 006790 589 DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 589 ~~~~~aILfgv~~Gsf~EGIDf~g~~lr~VII~gLPfp 626 (631)
|+-.||+|+ ..++||||+| .++.||..++|..
T Consensus 463 --g~~~VLVaT--~~~~~GIDip--~v~~VI~~d~p~s 494 (699)
T 4gl2_A 463 --GKINLLIAT--TVAEEGLDIK--ECNIVIRYGLVTN 494 (699)
T ss_dssp -----CCSEEE--CSCCTTSCCC--SCCCCEEESCCCC
T ss_pred --CCCcEEEEc--cccccCCccc--cCCEEEEeCCCCC
Confidence 677899999 7999999999 6888999998853
No 104
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.29 E-value=0.027 Score=61.18 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhc-ccCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeC---------CCchhhHHHHHHHHH
Q 006790 517 ARNYGKLLVEMVS-IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRK 586 (631)
Q Consensus 517 ~~~l~~~i~~~~~-~~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~---------~~~~~~~~~l~~fk~ 586 (631)
...+.+.|.+... ..++.+|||+++-...+.+.+.++.......+ +...+-+ ....++...+++|++
T Consensus 374 ~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 374 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI---KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSC---CEEC---------------------------
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCccee---eeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 3556666655443 34578999999999999999999764211100 1111101 112345567788876
Q ss_pred hhcCCCCeEEEEEecCcccccccCCCCCceEEEEEcccCC
Q 006790 587 ACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 587 ~~~~~~~aILfgv~~Gsf~EGIDf~g~~lr~VII~gLPfp 626 (631)
. |+-.||+++ ..++||||+|+ +.+||...+|..
T Consensus 451 ~---g~~~vLvaT--~~~~~GiDip~--v~~VI~~d~p~s 483 (556)
T 4a2p_A 451 S---KDNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSGN 483 (556)
T ss_dssp ------CCEEEEE--C-------------CEEEEETCCSC
T ss_pred c---CceEEEEEc--CchhcCCCchh--CCEEEEeCCCCC
Confidence 2 456799999 78999999997 899999998863
No 105
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.27 E-value=0.038 Score=62.24 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=50.3
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcch--------------------------HHHHhcCCeEEEeCC-CchhhHHHHHH
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGI--------------------------LKEIMQHKLVFIETQ-DVVETTLALDN 583 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~--------------------------~~~l~~~~~v~~e~~-~~~~~~~~l~~ 583 (631)
.++.+|||++|.+..+.++..+..... +.+.......+.-+. ...++..+.+.
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 468999999999999999988864210 000111122222222 22345556677
Q ss_pred HHHhhcCCCCeEEEEEecCcccccccCCCC
Q 006790 584 YRKACDCGRGAVFFSVARGKVAEGIDFDRH 613 (631)
Q Consensus 584 fk~~~~~~~~aILfgv~~Gsf~EGIDf~g~ 613 (631)
|++ |.-.||+|+ ..+.+|||+|+.
T Consensus 316 f~~----g~~~vlvaT--~~l~~Gvdip~~ 339 (720)
T 2zj8_A 316 FRK----GIIKAVVAT--PTLSAGINTPAF 339 (720)
T ss_dssp HHT----TSSCEEEEC--STTGGGCCCCBS
T ss_pred HHC----CCCeEEEEC--cHhhccCCCCce
Confidence 775 677899999 799999999983
No 106
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.17 E-value=0.031 Score=62.08 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=49.1
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhC-C-CCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK-P-ENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~-~-~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
.-+.|.+.+. ..+++++|.||.|||||...+.- +++.... + ... +|++.|.|+....++.+.+..+.
T Consensus 10 Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~r-i~~l~~~~~~~~~-~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 10 LNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHR-IAWLMSVENCSPY-SIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp CCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHH-HHHHHHTSCCCGG-GEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHH-HHHHHHhCCCChh-hEEEEeccHHHHHHHHHHHHHHh
Confidence 4688988775 23578999999999999876654 3343332 1 124 89999999999998888776653
No 107
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.04 E-value=0.11 Score=57.03 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=63.6
Q ss_pred HHHHHHHHhhccc--CCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCCchh-hHHHHHHHHHhhcCCCCe-
Q 006790 519 NYGKLLVEMVSIV--PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVE-TTLALDNYRKACDCGRGA- 594 (631)
Q Consensus 519 ~l~~~i~~~~~~~--~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~~~~-~~~~l~~fk~~~~~~~~a- 594 (631)
.+++.+.+.++.. .+.+|||+.|-...+.+++.++..+....-.....+..-..+..+ +..++++|++ ++..
T Consensus 424 ~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~----~~~~~ 499 (590)
T 3h1t_A 424 AFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQE----LETST 499 (590)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHC----TTCCC
T ss_pred HHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhC----CCCCC
Confidence 4445555444432 367999999999999999998764321100011112222222233 6677888886 3333
Q ss_pred --EEEEEecCcccccccCCCCCceEEEEEcccCC
Q 006790 595 --VFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 595 --ILfgv~~Gsf~EGIDf~g~~lr~VII~gLPfp 626 (631)
||+++ ..+.+|||+|+ +.+||+.+.|..
T Consensus 500 ~~ilvtt--~~l~~GiDip~--v~~Vi~~~~~~s 529 (590)
T 3h1t_A 500 PVILTTS--QLLTTGVDAPT--CKNVVLARVVNS 529 (590)
T ss_dssp CCEEEES--STTTTTCCCTT--EEEEEEESCCCC
T ss_pred CEEEEEC--ChhhcCccchh--eeEEEEEecCCC
Confidence 77777 68999999986 888999888753
No 108
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.87 E-value=0.05 Score=59.24 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=44.2
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHH
Q 006790 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (631)
Q Consensus 13 py~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~ 85 (631)
++. ..+.|++.+..+. .+++++|.+|+|||||...-. .+..+... +. +|+++++|......+-+
T Consensus 187 ~~~-L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~~-l~~~l~~~--g~-~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 187 RKG-LSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTKA-VADLAESL--GL-EVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TTT-CCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHHH-HHHHHHHT--TC-CEEEEESSHHHHHHHHH
T ss_pred cCC-CCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHHH-HHHHHHhc--CC-eEEEecCcHHHHHHhHh
Confidence 454 3789988776653 467899999999999963222 22222222 46 89999999887766644
No 109
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.081 Score=61.58 Aligned_cols=88 Identities=10% Similarity=0.160 Sum_probs=54.8
Q ss_pred hhcccCCcEEEEecchHHHHHHHHHHhhcchHH--------------------------------HHhcCCeEEEeCCCc
Q 006790 527 MVSIVPDGIVCFFVSYSYMDEIIATWNDSGILK--------------------------------EIMQHKLVFIETQDV 574 (631)
Q Consensus 527 ~~~~~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~--------------------------------~l~~~~~v~~e~~~~ 574 (631)
+.....+.++||.+|....+.++..+...++.. .....+..+. ..+.
T Consensus 338 l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~-Hggl 416 (1010)
T 2xgj_A 338 IWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIH-HSGL 416 (1010)
T ss_dssp HHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEE-STTS
T ss_pred HHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEE-CCCC
Confidence 333334579999999999999998886532210 0000011112 2222
Q ss_pred --hhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccCCCCCceEEEEEccc
Q 006790 575 --VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624 (631)
Q Consensus 575 --~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf~g~~lr~VII~gLP 624 (631)
..+..+++.|++ |.-.||+|+ ..+++|||+|+ +.|||.+++
T Consensus 417 ~~~eR~~ve~~F~~----G~ikVLVAT--~~la~GIDiP~---~~vVI~~~~ 459 (1010)
T 2xgj_A 417 LPILKEVIEILFQE----GFLKVLFAT--ETFSIGLNMPA---KTVVFTSVR 459 (1010)
T ss_dssp CHHHHHHHHHHHHT----TCCSEEEEE--GGGGGSTTCCB---SEEEESCSE
T ss_pred CHHHHHHHHHHHhc----CCCcEEEEe--hHhhccCCCCC---ceEEEeCCc
Confidence 234456667765 677899999 79999999997 445666544
No 110
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=94.75 E-value=0.041 Score=58.15 Aligned_cols=73 Identities=16% Similarity=0.087 Sum_probs=53.8
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCCchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccC
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf 610 (631)
.+|.+|||++|.+..+.+++.++..+ ..+..-..+. ....+++|+ .|+-.||+++ ..+.+|||+
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g--------~~~~~lh~~~--~~~~~~~f~----~g~~~vLVaT--~v~~~GiDi 250 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSG--------KRVIQLSRKT--FDTEYPKTK----LTDWDFVVTT--DISEMGANF 250 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTT--------CCEEEECTTT--HHHHGGGGG----SSCCSEEEEC--GGGGSSCCC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcC--------CeEEECCHHH--HHHHHHhhc----cCCceEEEEC--CHHHhCcCC
Confidence 47899999999999999999997643 1222223322 244555555 4788999999 789999999
Q ss_pred CCCCceEEEEEc
Q 006790 611 DRHYGRLVIMFG 622 (631)
Q Consensus 611 ~g~~lr~VII~g 622 (631)
|+ +.||-.|
T Consensus 251 p~---~~VI~~~ 259 (451)
T 2jlq_A 251 RA---GRVIDPR 259 (451)
T ss_dssp CC---SEEEECC
T ss_pred CC---CEEEECC
Confidence 98 8888666
No 111
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=94.71 E-value=0.012 Score=62.31 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=50.4
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCCchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccC
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf 610 (631)
.++.+|||++|....+.+++.++..++ +...+-++ ++...+++|++ |+..||+++ ..+.+|||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~-------~v~~lh~~---~R~~~~~~f~~----g~~~iLVaT--~v~~~GiDi 252 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGK-------KVIQLNRK---SYDTEYPKCKN----GDWDFVITT--DISEMGANF 252 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTC-------CEEEESTT---CCCCCGGGSSS----CCCSEEEES--SCC---CCC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCC-------cEEecCHH---HHHHHHhhccC----CCceEEEEC--ChHHhCeec
Confidence 478999999999999999999976431 22222222 22334555543 677899999 789999999
Q ss_pred CCCCceEEEEEc
Q 006790 611 DRHYGRLVIMFG 622 (631)
Q Consensus 611 ~g~~lr~VII~g 622 (631)
|+ +.||-.|
T Consensus 253 p~---~~VI~~G 261 (459)
T 2z83_A 253 GA---SRVIDCR 261 (459)
T ss_dssp SC---SEEEECC
T ss_pred CC---CEEEECC
Confidence 97 8888866
No 112
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.68 E-value=0.068 Score=49.39 Aligned_cols=52 Identities=19% Similarity=0.088 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHhcC------CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 19 PEQYSYMLELKRALDAK------GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~------~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
+.|.+++..+.+.+... .++++.+|+|||||. |+-+++...... +. ++++.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~--la~~i~~~~~~~-~~-~~~~~~ 89 (202)
T 2w58_A 32 DGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTY--LLAAIANELAKR-NV-SSLIVY 89 (202)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHH--HHHHHHHHHHTT-TC-CEEEEE
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHH--HHHHHHHHHHHc-CC-eEEEEE
Confidence 46777777777777665 689999999999998 333343333222 34 566543
No 113
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=94.65 E-value=0.21 Score=48.56 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhcccCCcEEEEecchHHHHHHHHHHhhc-chHHHHhcCCeEEEeCCC-chhhHHHHHHHHHhhcCCCCe-
Q 006790 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS-GILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRGA- 594 (631)
Q Consensus 518 ~~l~~~i~~~~~~~~gg~LVfF~Sy~~l~~v~~~~~~~-~~~~~l~~~~~v~~e~~~-~~~~~~~l~~fk~~~~~~~~a- 594 (631)
..+.+.|.++.+ .+..+|||..+-.+++.+...+... + .....+-+.. ..++..++++|++. ....
T Consensus 99 ~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g-------~~~~~l~G~~~~~~R~~~i~~F~~~---~~~~v 167 (271)
T 1z5z_A 99 IRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELN-------TEVPFLYGELSKKERDDIISKFQNN---PSVKF 167 (271)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHC-------SCCCEECTTSCHHHHHHHHHHHHHC---TTCCE
T ss_pred HHHHHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcC-------CcEEEEECCCCHHHHHHHHHHhcCC---CCCCE
Confidence 345555555432 4678999999999999998888642 2 1233443332 24567788999873 1223
Q ss_pred EEEEEecCcccccccCCCCCceEEEEEcccCCCC
Q 006790 595 VFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628 (631)
Q Consensus 595 ILfgv~~Gsf~EGIDf~g~~lr~VII~gLPfp~p 628 (631)
+|+++ ...++|+|+++ +..||+..+|+-+-
T Consensus 168 ~L~st--~~~g~Glnl~~--a~~VI~~d~~wnp~ 197 (271)
T 1z5z_A 168 IVLSV--KAGGFGINLTS--ANRVIHFDRWWNPA 197 (271)
T ss_dssp EEEEC--CTTCCCCCCTT--CSEEEECSCCSCTT
T ss_pred EEEeh--hhhcCCcCccc--CCEEEEECCCCChh
Confidence 56666 68999999985 89999999998654
No 114
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=94.59 E-value=0.1 Score=57.83 Aligned_cols=91 Identities=13% Similarity=0.264 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhcccCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCC-CchhhHHHHHHHHHhhcCCCCeEE
Q 006790 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVF 596 (631)
Q Consensus 518 ~~l~~~i~~~~~~~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~-~~~~~~~~l~~fk~~~~~~~~aIL 596 (631)
..+.+.|.+.. ..++.+|||++|-...+.+++.++..++ +..++-+. +..++...+++|+. |+-.||
T Consensus 432 ~~Ll~~l~~~~-~~~~~vlVf~~t~~~ae~L~~~L~~~gi-------~~~~lh~~~~~~~R~~~l~~f~~----g~~~VL 499 (661)
T 2d7d_A 432 DDLIGEIQARI-ERNERVLVTTLTKKMSEDLTDYLKEIGI-------KVNYLHSEIKTLERIEIIRDLRL----GKYDVL 499 (661)
T ss_dssp HHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTCCHHHHHHHHHHHHH----TSCSEE
T ss_pred HHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHhcCC-------CeEEEeCCCCHHHHHHHHHHHhc----CCeEEE
Confidence 33434444433 2356899999999999999999986542 22222222 23456677888876 567899
Q ss_pred EEEecCcccccccCCCCCceEEEEEccc
Q 006790 597 FSVARGKVAEGIDFDRHYGRLVIMFGVP 624 (631)
Q Consensus 597 fgv~~Gsf~EGIDf~g~~lr~VII~gLP 624 (631)
+|+ +.+.+|+|+|+ +++||+...+
T Consensus 500 VaT--~~l~~GlDip~--v~lVi~~d~d 523 (661)
T 2d7d_A 500 VGI--NLLREGLDIPE--VSLVAILDAD 523 (661)
T ss_dssp EES--CCCSTTCCCTT--EEEEEETTTT
T ss_pred Eec--chhhCCcccCC--CCEEEEeCcc
Confidence 998 78999999995 8999999875
No 115
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=94.57 E-value=0.2 Score=53.61 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=65.5
Q ss_pred HHHHHHHHhhcccCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCCc-hhhHHHHHHHHHhhcCCCCeEEE
Q 006790 519 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDV-VETTLALDNYRKACDCGRGAVFF 597 (631)
Q Consensus 519 ~l~~~i~~~~~~~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~~-~~~~~~l~~fk~~~~~~~~aILf 597 (631)
.+.+.+.+... .+++.+|+|.+.+..+.+++.++..+ .+..++-++.. .++..+++.|++ |+..||+
T Consensus 335 ~l~~~l~~~~~-~~~~~~ivf~~~~~~~~l~~~L~~~~-------~~v~~~~g~~~~~~r~~i~~~f~~----g~~~vLv 402 (510)
T 2oca_A 335 WIAKLAIKLAQ-KDENAFVMFKHVSHGKAIFDLIKNEY-------DKVYYVSGEVDTETRNIMKTLAEN----GKGIIIV 402 (510)
T ss_dssp HHHHHHHHHHT-TTCEEEEEESSHHHHHHHHHHHHTTC-------SSEEEESSSTTHHHHHHHHHHHHH----CCSCEEE
T ss_pred HHHHHHHHHHh-cCCCeEEEEecHHHHHHHHHHHHHcC-------CCeEEEECCCCHHHHHHHHHHHhC----CCCCEEE
Confidence 34455555443 46788899999998888888887542 13334433322 345667888886 5667998
Q ss_pred EEecCcccccccCCCCCceEEEEEcccCC
Q 006790 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 598 gv~~Gsf~EGIDf~g~~lr~VII~gLPfp 626 (631)
|+. ..+.+|||+|+ ++.||+.+.|+.
T Consensus 403 ~T~-~~~~~GiDip~--v~~vi~~~~~~s 428 (510)
T 2oca_A 403 ASY-GVFSTGISVKN--LHHVVLAHGVKS 428 (510)
T ss_dssp EEH-HHHHHSCCCCS--EEEEEESSCCCS
T ss_pred EEc-Chhhccccccc--CcEEEEeCCCCC
Confidence 883 38999999997 899999999854
No 116
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=94.40 E-value=0.061 Score=61.31 Aligned_cols=100 Identities=15% Similarity=0.207 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhc-ccCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCe-EEEe--------CCCchhhHHHHHHHHH
Q 006790 517 ARNYGKLLVEMVS-IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKL-VFIE--------TQDVVETTLALDNYRK 586 (631)
Q Consensus 517 ~~~l~~~i~~~~~-~~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~-v~~e--------~~~~~~~~~~l~~fk~ 586 (631)
...+.+.|.+... ..++.+|||+++-...+.+.+.++.......+ +. .|.- +....++..++++|++
T Consensus 615 ~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~---~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 615 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI---KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSC---CCEEC--------------------------
T ss_pred HHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccc---cceEEEecCCcccCCCCCHHHHHHHHHHhhc
Confidence 3556666665433 34578999999999999999999753110000 10 1110 0111245567788876
Q ss_pred hhcCCCCeEEEEEecCcccccccCCCCCceEEEEEcccCC
Q 006790 587 ACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 587 ~~~~~~~aILfgv~~Gsf~EGIDf~g~~lr~VII~gLPfp 626 (631)
. |+-.||+++ ..+.||||+|+ ++.||...+|..
T Consensus 692 ~---g~~~vLVaT--~~~~~GIDlp~--v~~VI~yd~p~s 724 (797)
T 4a2q_A 692 S---KDNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSGN 724 (797)
T ss_dssp -----CCSEEEEE--CC-------CC--CSEEEEESCCSC
T ss_pred c---CCceEEEEc--CchhcCCCchh--CCEEEEeCCCCC
Confidence 2 456799999 78999999996 899999998863
No 117
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=94.30 E-value=0.069 Score=59.83 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhccc-CCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeC---------CCchhhHHHHHHHHHh
Q 006790 518 RNYGKLLVEMVSIV-PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 587 (631)
Q Consensus 518 ~~l~~~i~~~~~~~-~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~---------~~~~~~~~~l~~fk~~ 587 (631)
..+.+.+.+..... ++.+|||+++....+.+++.++..+.... .+...+-+ ....++..++++|++.
T Consensus 383 ~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~---~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~ 459 (696)
T 2ykg_A 383 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF---LKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 459 (696)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCS---CCEEC----------------------------
T ss_pred HHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccc---cceeEEEccCCCccccCCCHHHHHHHHHHHHhc
Confidence 44555555543333 46799999999999999999986542110 12222211 1112345567777751
Q ss_pred hcCCCCeEEEEEecCcccccccCCCCCceEEEEEcccCC
Q 006790 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 588 ~~~~~~aILfgv~~Gsf~EGIDf~g~~lr~VII~gLPfp 626 (631)
|+-.||+++ ..+.||||+|+ ++.||..++|..
T Consensus 460 ---g~~~vLVaT--~v~~~GiDip~--v~~VI~~d~p~s 491 (696)
T 2ykg_A 460 ---GDHNILIAT--SVADEGIDIAQ--CNLVILYEYVGN 491 (696)
T ss_dssp ----CCSCSEEE--ESSCCC---CC--CSEEEEESCC--
T ss_pred ---CCccEEEEe--chhhcCCcCcc--CCEEEEeCCCCC
Confidence 566899999 68999999997 889999999854
No 118
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=94.30 E-value=0.097 Score=60.65 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhcc-cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeC---------CCchhhHHHHHHHHHh
Q 006790 518 RNYGKLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 587 (631)
Q Consensus 518 ~~l~~~i~~~~~~-~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~---------~~~~~~~~~l~~fk~~ 587 (631)
..+.+.|.+.... .++.+|||.++.++++.+.+.++....+..+ +..++-+ ....++..++++|++.
T Consensus 616 ~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~i---k~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~ 692 (936)
T 4a2w_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI---KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (936)
T ss_dssp HHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSC---CCEEC---------------------------
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCcccccc---ceeEEecCCCcccCCCCCHHHHHHHHHHhhcc
Confidence 5566666665433 3578999999999999999999864110000 1111100 1123456677888762
Q ss_pred hcCCCCeEEEEEecCcccccccCCCCCceEEEEEcccCC
Q 006790 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 588 ~~~~~~aILfgv~~Gsf~EGIDf~g~~lr~VII~gLPfp 626 (631)
|+-.||+++ ..+.||||+|+ +..||...+|..
T Consensus 693 ---g~~~VLVaT--~~~~eGIDlp~--v~~VI~yD~p~s 724 (936)
T 4a2w_A 693 ---KDNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSGN 724 (936)
T ss_dssp ----CCSEEEEE--CC------CCC--CSEEEEESCCSC
T ss_pred ---CCeeEEEEe--CchhcCCcchh--CCEEEEeCCCCC
Confidence 456799999 78999999997 899999998864
No 119
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.19 E-value=0.13 Score=57.18 Aligned_cols=91 Identities=13% Similarity=0.239 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhcccCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCC-CchhhHHHHHHHHHhhcCCCCeEE
Q 006790 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVF 596 (631)
Q Consensus 518 ~~l~~~i~~~~~~~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~-~~~~~~~~l~~fk~~~~~~~~aIL 596 (631)
..+.+.|.... ..++.+|||++|-...+.+.+.+...++ +..++-+. +..++...+++|+. |+-.||
T Consensus 426 ~~Ll~~l~~~~-~~~~~vlVf~~t~~~ae~L~~~L~~~gi-------~~~~lh~~~~~~~R~~~~~~f~~----g~~~VL 493 (664)
T 1c4o_A 426 LDLMEGIRERA-ARGERTLVTVLTVRMAEELTSFLVEHGI-------RARYLHHELDAFKRQALIRDLRL----GHYDCL 493 (664)
T ss_dssp HHHHHHHHHHH-HTTCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTCCHHHHHHHHHHHHT----TSCSEE
T ss_pred HHHHHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHhcCC-------CceeecCCCCHHHHHHHHHHhhc----CCceEE
Confidence 34444444433 2467899999999999999999986542 22222222 22345667777875 566899
Q ss_pred EEEecCcccccccCCCCCceEEEEEccc
Q 006790 597 FSVARGKVAEGIDFDRHYGRLVIMFGVP 624 (631)
Q Consensus 597 fgv~~Gsf~EGIDf~g~~lr~VII~gLP 624 (631)
+|+ ..+.+|+|+|+ ++.||+...+
T Consensus 494 vaT--~~l~~GlDip~--v~lVI~~d~d 517 (664)
T 1c4o_A 494 VGI--NLLREGLDIPE--VSLVAILDAD 517 (664)
T ss_dssp EES--CCCCTTCCCTT--EEEEEETTTT
T ss_pred Ecc--ChhhcCccCCC--CCEEEEeCCc
Confidence 998 78999999995 8999999874
No 120
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=94.11 E-value=0.059 Score=59.22 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=58.4
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCCchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccC
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf 610 (631)
.++.+|||++|.+..+.+++.++..++ +...+ .. ..+...+++|++ |+-.||+++ ..+.+|||+
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~-------~v~~l-hg--~~R~~~l~~F~~----g~~~VLVaT--dv~~rGiDi 417 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGK-------RVIQL-SR--KTFDTEYPKTKL----TDWDFVVTT--DISEMGANF 417 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTC-------CEEEE-CT--TTHHHHTTHHHH----SCCSEEEEC--GGGGTTCCC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCC-------cEEEE-Ch--HHHHHHHHhhcC----CCcEEEEEC--cHHHcCccc
Confidence 478999999999999999999986431 22233 22 245668888887 577899999 789999999
Q ss_pred CCCCceEEEEEcccC
Q 006790 611 DRHYGRLVIMFGVPF 625 (631)
Q Consensus 611 ~g~~lr~VII~gLPf 625 (631)
+ ++.||..|+++
T Consensus 418 ~---v~~VId~g~~~ 429 (618)
T 2whx_A 418 R---AGRVIDPRRCL 429 (618)
T ss_dssp C---CSEEEECCEEE
T ss_pred C---ceEEEECccee
Confidence 4 78898887743
No 121
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.05 E-value=0.14 Score=53.67 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=50.2
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCCchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccC
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf 610 (631)
.+|.+|||++|.+..+.+++.++..+ .+...+-++ .+...+++|++ |+-.||+++ .-+.+|||+
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~v~~lhg~---~r~~~~~~f~~----g~~~vLVaT--~v~e~GiDi 233 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAG-------KKVLYLNRK---TFESEYPKCKS----EKWDFVITT--DISEMGANF 233 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTT-------CCEEEESTT---THHHHTTHHHH----SCCSEEEEC--GGGGTSCCC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcC-------CeEEEeCCc---cHHHHHHhhcC----CCCeEEEEC--chHHcCccc
Confidence 47899999999999999999987542 122333232 35667888887 677899999 689999999
Q ss_pred C
Q 006790 611 D 611 (631)
Q Consensus 611 ~ 611 (631)
|
T Consensus 234 p 234 (431)
T 2v6i_A 234 K 234 (431)
T ss_dssp C
T ss_pred C
Confidence 8
No 122
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.83 E-value=0.074 Score=48.13 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHHHh-----cCCcEEEecCCCChhHH
Q 006790 18 YPEQYSYMLELKRALD-----AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~-----~~~~~~iEapTGtGKTl 50 (631)
.+.|.+....+.+.+. .+.++++-+|+|+|||.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTt 53 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTH 53 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHH
Confidence 4678888877776663 46789999999999987
No 123
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=93.66 E-value=0.24 Score=50.72 Aligned_cols=73 Identities=11% Similarity=0.051 Sum_probs=55.6
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
.|+.. .|.|+.++..+. ..+..+++.|-+.|||.....-++.++...+ +. +|+++.+|..|...+++.++.+.
T Consensus 160 ~p~~L-~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-g~-~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 160 IKVQL-RDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DK-AVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp EECCC-CHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-SC-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-CC-eEEEEeCCHHHHHHHHHHHHHHH
Confidence 56774 899999987663 3467999999999999865555444444433 45 89999999999988888777654
No 124
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.51 E-value=0.11 Score=45.23 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHH
Q 006790 22 YSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 59 (631)
Q Consensus 22 ~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~ 59 (631)
.++.+.+..+...+.++++.+|+|||||. |.-++..
T Consensus 11 ~~~~~~~~~~a~~~~~vll~G~~GtGKt~--lA~~i~~ 46 (145)
T 3n70_A 11 NQYRRRLQQLSETDIAVWLYGAPGTGRMT--GARYLHQ 46 (145)
T ss_dssp HHHHHHHHHHTTCCSCEEEESSTTSSHHH--HHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCCHHH--HHHHHHH
Confidence 34444444444566799999999999998 4444543
No 125
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.39 E-value=0.11 Score=57.79 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=47.7
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCC-CCCceEEEEecchhhHHHHHHHHHhh
Q 006790 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-ENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~-~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
..|.|++.+.. .+++++|.||.|||||.....-+.......+ ... +|++.|-|+.....+-+.+..+
T Consensus 3 L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~-~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 3 LNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR-HIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGG-GEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHH-HeEEEeccHHHHHHHHHHHHHH
Confidence 36889887753 3678999999999999876654333332211 234 8999999999888887766654
No 126
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.23 E-value=0.16 Score=50.46 Aligned_cols=52 Identities=15% Similarity=0.059 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhc-----CCcEEEecCCCChhHHHHHHHHHHHHhh-CCCCCceEEEEec
Q 006790 20 EQYSYMLELKRALDA-----KGHCLLEMPTGTGKTIALLSLITSYVLS-KPENPVKLIYCTR 75 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~-----~~~~~iEapTGtGKTla~L~~~l~~~~~-~~~~~~~vi~~t~ 75 (631)
.+.++...+.+.+.+ +.++++-+|||||||. |+-+++.... .. +. +|++.+.
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~--La~aia~~~~~~~-g~-~v~~~~~ 189 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSY--LLAAMAHELSEKK-GV-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHH--HHHHHHHHHHHHS-CC-CEEEEEH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHH--HHHHHHHHHHHhc-CC-cEEEEEH
Confidence 556666666666665 5789999999999998 4444444332 21 34 6766543
No 127
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.23 E-value=0.27 Score=53.76 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=56.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhhh
Q 006790 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l~ 91 (631)
.|+.. +|.|+.++..+ ...+..++++|-|+|||.....-++.++...+ +. +|+++.+|..|...+++.++.+.
T Consensus 160 ~~~~l-~p~Q~~i~~~l----~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~-~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 160 IKVQL-RDYQRDMLKIM----SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DK-AVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp BBCCC-CHHHHHHHHHH----HHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SC-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCcC-CHHHHHHHHhh----ccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CC-eEEEEECCHHHHHHHHHHHHHHH
Confidence 67775 89999998876 23567999999999999865544444454443 45 89999999999999988777654
No 128
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.13 E-value=0.1 Score=55.43 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=57.0
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCCchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccC
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf 610 (631)
.++.+|||+++-+..+.+.+.+.-. ++--..+..++..++++|++ |+..||+|+ ..+.||||+
T Consensus 348 ~~~k~lvF~~~~~~~~~l~~~l~~~-----------~~~g~~~~~~R~~~~~~F~~----g~~~vLv~T--~~~~~Gldl 410 (472)
T 2fwr_A 348 RKDKIIIFTRHNELVYRISKVFLIP-----------AITHRTSREEREEILEGFRT----GRFRAIVSS--QVLDEGIDV 410 (472)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHTTCC-----------BCCSSSCSHHHHTHHHHHHH----SSCSBCBCS--SCCCSSSCS
T ss_pred CCCcEEEEECCHHHHHHHHHHhCcc-----------eeeCCCCHHHHHHHHHHHhC----CCCCEEEEc--CchhcCccc
Confidence 3578999999999999888876411 11111223456678888887 577899888 799999999
Q ss_pred CCCCceEEEEEcccCC
Q 006790 611 DRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 611 ~g~~lr~VII~gLPfp 626 (631)
|+ +..||+...|..
T Consensus 411 p~--~~~Vi~~~~~~s 424 (472)
T 2fwr_A 411 PD--ANVGVIMSGSGS 424 (472)
T ss_dssp CC--BSEEEEECCSSC
T ss_pred cc--CcEEEEECCCCC
Confidence 85 779999888853
No 129
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=93.04 E-value=0.13 Score=57.05 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=56.9
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCCchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccC
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf 610 (631)
.++.+|||++|.+..+.+++.|+..+ .+...+-+ .++...+++|++ |+-.||+++ ..+.+|||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g-------~~v~~lHg---~eR~~v~~~F~~----g~~~VLVaT--dv~e~GIDi 472 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAG-------KRVIQLNR---KSYDTEYPKCKN----GDWDFVITT--DISEMGANF 472 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTT-------CCEEEECS---SSHHHHGGGGGT----CCCSEEEEC--GGGGTTCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCC-------CeEEEeCh---HHHHHHHHHHHC----CCceEEEEC--chhhcceee
Confidence 47899999999999999999997642 13333323 245666777765 677899999 689999999
Q ss_pred CCCCceEEEEEcccC
Q 006790 611 DRHYGRLVIMFGVPF 625 (631)
Q Consensus 611 ~g~~lr~VII~gLPf 625 (631)
| ++.||..|.++
T Consensus 473 p---v~~VI~~g~~~ 484 (673)
T 2wv9_A 473 G---ASRVIDCRKSV 484 (673)
T ss_dssp C---CSEEEECCEEC
T ss_pred C---CcEEEECCCcc
Confidence 8 68888766443
No 130
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=92.93 E-value=0.17 Score=56.78 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=47.2
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhC-C-CCCceEEEEecchhhHHHHHHHHHhh
Q 006790 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK-P-ENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~-~-~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
.-|.|++.+.. .+++++|.||.|||||.....- ++|.... + ... +|++.|-|+.....+-+.+..+
T Consensus 12 Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~r-i~~ll~~~~~~p~-~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 12 LNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHR-IAYLMAEKHVAPW-NILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp SCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHH-HHHHHHTTCCCGG-GEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHH-HHHHHHhcCCCHH-HeEEEeccHHHHHHHHHHHHHH
Confidence 46889887653 3578999999999999876654 3444332 1 124 8999999998888877656554
No 131
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=92.92 E-value=0.13 Score=53.98 Aligned_cols=71 Identities=10% Similarity=0.114 Sum_probs=47.4
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCCchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccC
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf 610 (631)
.++.+|||++|.+..+.+++.++..+ .+...+-+ .++...+++|++ |+-.||+++ ..+..|||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~-------~~v~~lhg---~~R~~~~~~F~~----g~~~vLVaT--~v~e~GiDi 239 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAG-------KSVVVLNR---KTFEREYPTIKQ----KKPDFILAT--DIAEMGANL 239 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTT-------CCEEECCS---SSCC------------CCCSEEEES--SSTTCCTTC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcC-------CCEEEecc---hhHHHHHhhhcC----CCceEEEEC--Chhheeecc
Confidence 37889999999999999999987642 12222322 234567788876 677899998 789999999
Q ss_pred CCCCceEEEE
Q 006790 611 DRHYGRLVIM 620 (631)
Q Consensus 611 ~g~~lr~VII 620 (631)
| ++.||.
T Consensus 240 p---v~~VI~ 246 (440)
T 1yks_A 240 C---VERVLD 246 (440)
T ss_dssp C---CSEEEE
T ss_pred C---ceEEEe
Confidence 8 677775
No 132
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.83 E-value=0.076 Score=46.13 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCChhHH
Q 006790 23 SYMLELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 23 ~~~~~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
++.+.+..+...+.++++.+|+|||||.
T Consensus 15 ~l~~~~~~~~~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 15 EMNREVEAAAKRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETTCCHHH
T ss_pred HHHHHHHHHhCCCCcEEEECCCCccHHH
Confidence 3444444445556789999999999997
No 133
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.76 E-value=0.076 Score=53.44 Aligned_cols=40 Identities=25% Similarity=0.144 Sum_probs=32.5
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHH
Q 006790 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 59 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~ 59 (631)
.-+|.+.+..+..++..++++++.+|+|||||. |+-+++.
T Consensus 29 i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~--la~~la~ 68 (331)
T 2r44_A 29 VVGQKYMINRLLIGICTGGHILLEGVPGLAKTL--SVNTLAK 68 (331)
T ss_dssp CCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHH--HHHHHHH
T ss_pred eeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHH--HHHHHHH
Confidence 457888889999999889999999999999998 4434443
No 134
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.63 E-value=0.13 Score=57.92 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=57.3
Q ss_pred HHHHHHHHhhcccCCcEEEEecch--------HHHHHHHHHHhhcchHHHHhcCCeEEEeCC-CchhhHHHHHHHHHhhc
Q 006790 519 NYGKLLVEMVSIVPDGIVCFFVSY--------SYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACD 589 (631)
Q Consensus 519 ~l~~~i~~~~~~~~gg~LVfF~Sy--------~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~-~~~~~~~~l~~fk~~~~ 589 (631)
.+.+.+.+.+ ..++.++||+|+- ...+.+++.|+... +.+ .+..++-++ ...++...+++|++
T Consensus 566 ~l~~~i~~~l-~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~-~~~---~~v~~lHG~m~~~eR~~v~~~F~~--- 637 (780)
T 1gm5_A 566 EVYEFVRQEV-MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV-FPE---FKLGLMHGRLSQEEKDRVMLEFAE--- 637 (780)
T ss_dssp HHHHHHHHHT-TTSCCBCCBCCCC--------CHHHHHHHSGGGSC-C------CBCCCCSSSCCSCSHHHHHHHTT---
T ss_pred HHHHHHHHHH-hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhh-cCC---CcEEEEeCCCCHHHHHHHHHHHHC---
Confidence 3444454433 2356789999854 34555566555410 001 112122222 22356778888876
Q ss_pred CCCCeEEEEEecCcccccccCCCCCceEEEEEccc
Q 006790 590 CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624 (631)
Q Consensus 590 ~~~~aILfgv~~Gsf~EGIDf~g~~lr~VII~gLP 624 (631)
|+-.||+|+ ..+.+|||+|+ ++.||+...|
T Consensus 638 -G~~~ILVaT--~vie~GIDiP~--v~~VIi~d~~ 667 (780)
T 1gm5_A 638 -GRYDILVST--TVIEVGIDVPR--ANVMVIENPE 667 (780)
T ss_dssp -TSSSBCCCS--SCCCSCSCCTT--CCEEEBCSCS
T ss_pred -CCCeEEEEC--CCCCccccCCC--CCEEEEeCCC
Confidence 677899988 68999999997 7889998877
No 135
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=92.54 E-value=0.56 Score=49.95 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhcccCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCC-chhhHHHHHHHHHhhcCCCC-eE
Q 006790 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRG-AV 595 (631)
Q Consensus 518 ~~l~~~i~~~~~~~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~-~~~~~~~l~~fk~~~~~~~~-aI 595 (631)
..+.+.+.+.. ..+..++||..+-..++.+.+.+... . .....++-+.. ..++..++++|++. +.. .+
T Consensus 328 ~~l~~~l~~~~-~~~~k~lvF~~~~~~~~~l~~~l~~~-----~-~~~~~~~~g~~~~~~R~~~~~~F~~~---~~~~vi 397 (500)
T 1z63_A 328 IRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKE-----L-NTEVPFLYGELSKKERDDIISKFQNN---PSVKFI 397 (500)
T ss_dssp HHHHHHHHHHH-TTTCCEEEECSCHHHHHHHHHHHHHH-----H-TCCCCEEETTSCHHHHHHHHHHHHHC---TTCCCC
T ss_pred HHHHHHHHHHH-ccCCcEEEEEehHHHHHHHHHHHHHh-----h-CCCeEEEECCCCHHHHHHHHHHhcCC---CCCCEE
Confidence 34555555543 24568999999999999888888642 0 12333444443 24567788999873 122 36
Q ss_pred EEEEecCcccccccCCCCCceEEEEEcccCCC
Q 006790 596 FFSVARGKVAEGIDFDRHYGRLVIMFGVPFQY 627 (631)
Q Consensus 596 Lfgv~~Gsf~EGIDf~g~~lr~VII~gLPfp~ 627 (631)
|+++ ....||+|+++ +..||+..+|+-+
T Consensus 398 l~st--~~~~~Glnl~~--~~~vi~~d~~~~~ 425 (500)
T 1z63_A 398 VLSV--KAGGFGINLTS--ANRVIHFDRWWNP 425 (500)
T ss_dssp EEEC--CCC-CCCCCTT--CSEEEESSCCSCC
T ss_pred EEec--ccccCCCchhh--CCEEEEeCCCCCc
Confidence 7776 68999999985 8999999988754
No 136
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.80 E-value=0.09 Score=55.99 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHH
Q 006790 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 59 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~ 59 (631)
.-+|.+.++.+..++..+.++++.+|+|||||. |+-+++.
T Consensus 24 ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~--LAraLa~ 63 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSL--IARRLKF 63 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHH--HHHHGGG
T ss_pred hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHH--HHHHHHH
Confidence 357788889999999999999999999999998 5544543
No 137
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.32 E-value=0.26 Score=48.68 Aligned_cols=33 Identities=30% Similarity=0.215 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHhc----------------CCcEEEecCCCChhHHH
Q 006790 19 PEQYSYMLELKRALDA----------------KGHCLLEMPTGTGKTIA 51 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~----------------~~~~~iEapTGtGKTla 51 (631)
.+|.+.+..+..++.. ..++++.+|+|||||..
T Consensus 18 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHH
T ss_pred CChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHH
Confidence 3566666666666654 46799999999999983
No 138
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=91.07 E-value=0.48 Score=54.98 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=55.0
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHh
Q 006790 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (631)
Q Consensus 13 py~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~ 89 (631)
+++ +||.|.+.+..+... .+..+++-.+||+|||+.++..+..+.... ..+ +++|.+|| ++..|+.+|+.+
T Consensus 151 ~~~-LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~-rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 151 RTS-LIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAE-RVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SSC-CCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCC-CEEEECCT-TTHHHHHHHHHH
T ss_pred CCC-CcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCC-eEEEEeCH-HHHHHHHHHHHH
Confidence 466 499999988776542 245789999999999999988755444333 245 89999999 999999999865
No 139
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.51 E-value=0.42 Score=46.09 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHH
Q 006790 19 PEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~ 58 (631)
+.-.++.+.+..+...+.++++.+|||||||. |+-+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~--la~~i~ 50 (265)
T 2bjv_A 13 NSFLEVLEQVSHLAPLDKPVLIIGERGTGKEL--IASRLH 50 (265)
T ss_dssp HHHHHHHHHHHHHTTSCSCEEEECCTTSCHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHH--HHHHHH
Confidence 33344444555555556799999999999997 443444
No 140
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=90.19 E-value=0.37 Score=57.53 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=47.1
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCC----CCCceEEEEecchhhHHHHHHHHHh
Q 006790 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAELKL 89 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~----~~~~~vi~~t~T~~l~~Q~~~el~~ 89 (631)
+.+.|.+.+.. .+++++|.|+.|||||.+.+--+ .+..... ... +|++.|.|++....+-+.+..
T Consensus 11 ~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri-~~ll~~~~~~~~~~-~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 11 WTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERM-IRKITAEENPIDVD-RLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHH-HHHHSCSSSCCCGG-GEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHH-HHHHhcCCCCCCcc-ceEEEeccHHHHHHHHHHHHH
Confidence 47899887753 46799999999999999776543 3433331 224 899999999888777664443
No 141
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=90.12 E-value=0.74 Score=50.91 Aligned_cols=81 Identities=9% Similarity=0.087 Sum_probs=57.8
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCC-CchhhHHHHHHHHHhhcCCCCeEEEEEecCccccccc
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~-~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGID 609 (631)
.++|.+|||.|.+..+.+++.+...+ .+...+-++ ...++...++.|+. ..|+-.||+|+ ..+..|||
T Consensus 319 ~~~g~iIf~~s~~~ie~la~~L~~~g-------~~v~~lHG~L~~~~R~~~~~~F~~--~~g~~~VLVAT--di~e~GlD 387 (677)
T 3rc3_A 319 LRPGDCIVCFSKNDIYSVSRQIEIRG-------LESAVIYGSLPPGTKLAQAKKFND--PNDPCKILVAT--DAIGMGLN 387 (677)
T ss_dssp CCTTEEEECSSHHHHHHHHHHHHHTT-------CCCEEECTTSCHHHHHHHHHHHHC--TTSSCCEEEEC--GGGGSSCC
T ss_pred cCCCCEEEEcCHHHHHHHHHHHHhcC-------CCeeeeeccCCHHHHHHHHHHHHc--cCCCeEEEEeC--cHHHCCcC
Confidence 36677888999999999999987542 133333232 22234566777775 12456899999 79999999
Q ss_pred CCCCCceEEEEEcccC
Q 006790 610 FDRHYGRLVIMFGVPF 625 (631)
Q Consensus 610 f~g~~lr~VII~gLPf 625 (631)
+ + ++.||..|++-
T Consensus 388 i-~--v~~VI~~~~~k 400 (677)
T 3rc3_A 388 L-S--IRRIIFYSLIK 400 (677)
T ss_dssp C-C--BSEEEESCSBC
T ss_pred c-C--ccEEEECCccc
Confidence 9 4 99999999964
No 142
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.05 E-value=0.22 Score=50.73 Aligned_cols=38 Identities=34% Similarity=0.298 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHh-----------------cCCcEEEecCCCChhHHHHHHHHHHH
Q 006790 20 EQYSYMLELKRALD-----------------AKGHCLLEMPTGTGKTIALLSLITSY 59 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~-----------------~~~~~~iEapTGtGKTla~L~~~l~~ 59 (631)
+|.+.++.+..++. ...++++.+|||||||. ++-+++.
T Consensus 19 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~--la~~ia~ 73 (363)
T 3hws_A 19 GQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL--LAETLAR 73 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHH--HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHH--HHHHHHH
Confidence 56677777777773 34689999999999999 4444443
No 143
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=89.84 E-value=1.2 Score=49.14 Aligned_cols=81 Identities=10% Similarity=0.123 Sum_probs=56.9
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCC-chhhHHHHHHHHHhhcCCCC---eEEEEEecCcccc
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRG---AVFFSVARGKVAE 606 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~-~~~~~~~l~~fk~~~~~~~~---aILfgv~~Gsf~E 606 (631)
.++.+|||..+-.+++.+...+...+ ...+.+.+.. ..++..++++|++ ++. -+|+++ ....+
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g-------~~~~~l~G~~~~~~R~~~i~~F~~----~~~~~~v~L~st--~a~g~ 481 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRR-------YLYVRLDGTMSIKKRAKIVERFNN----PSSPEFIFMLSS--KAGGC 481 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHT-------CCEEEECSSCCHHHHHHHHHHHHS----TTCCCCEEEEEG--GGSCT
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCC-------CCEEEEeCCCCHHHHHHHHHHhcC----CCCCcEEEEEec--ccccC
Confidence 35678888888888888888776432 2334454432 2356678888876 333 356666 68999
Q ss_pred cccCCCCCceEEEEEcccCC
Q 006790 607 GIDFDRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 607 GIDf~g~~lr~VII~gLPfp 626 (631)
|+|+++ +..||+..+|+-
T Consensus 482 Glnl~~--a~~Vi~~d~~wn 499 (644)
T 1z3i_X 482 GLNLIG--ANRLVMFDPDWN 499 (644)
T ss_dssp TCCCTT--EEEEEECSCCSS
T ss_pred Cccccc--CCEEEEECCCCC
Confidence 999986 899999988864
No 144
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.64 E-value=0.41 Score=45.07 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhc--CCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEec
Q 006790 20 EQYSYMLELKRALDA--KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~--~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~ 75 (631)
.+.+....+...... +.++++.+|+|||||...- +++...... +. ++++.+.
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~--~l~~~~~~~-~~-~~~~~~~ 88 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIH--AACARANEL-ER-RSFYIPL 88 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHH--HHHHHHHHT-TC-CEEEEEG
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHH--HHHHHHHHc-CC-eEEEEEH
Confidence 346666677766664 5689999999999998332 333222211 34 6666554
No 145
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=89.57 E-value=0.36 Score=48.51 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHHHhcCC--c-EEEecCCCChhHHHHH
Q 006790 17 IYPEQYSYMLELKRALDAKG--H-CLLEMPTGTGKTIALL 53 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~--~-~~iEapTGtGKTla~L 53 (631)
.||.|.+....+..++.+++ + +++.+|+|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 47999999999999999875 3 8999999999988554
No 146
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=89.50 E-value=0.24 Score=49.33 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=25.0
Q ss_pred ChHHHHHHH-HHHHHHhcC--CcEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYML-ELKRALDAK--GHCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~-~v~~~l~~~--~~~~iEapTGtGKTla~L 53 (631)
|+.|.+-+. .+..++..+ .+++|-+|||||||...-
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 455555444 555666554 579999999999998444
No 147
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.94 E-value=0.32 Score=48.09 Aligned_cols=34 Identities=29% Similarity=0.294 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHhcC-----------CcEEEecCCCChhHHHH
Q 006790 19 PEQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~-----------~~~~iEapTGtGKTla~ 52 (631)
.+|...+..+..++... .++++.+|+|||||...
T Consensus 20 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 20 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 46777777777777664 47999999999999733
No 148
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.71 E-value=0.35 Score=43.31 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHhc--CCcEEEecCCCChhHHH
Q 006790 19 PEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIA 51 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~--~~~~~iEapTGtGKTla 51 (631)
.+|.+.+..+.+.+.. ..++++.+|+|||||..
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 25 IGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAI 59 (187)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHH
T ss_pred hcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHH
Confidence 4455566677777765 35799999999999973
No 149
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.47 E-value=0.33 Score=43.68 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHhcC--CcEEEecCCCChhHHHH
Q 006790 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~--~~~~iEapTGtGKTla~ 52 (631)
.++.+.+..+.+.+..+ .++++.+|+|||||...
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 25 IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred ccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 34555666777777654 57999999999999843
No 150
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.42 E-value=0.43 Score=44.79 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=29.7
Q ss_pred hcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecch
Q 006790 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~ 77 (631)
..+...++-+|+|+|||.+.|-.+..++.. +. +|+|.++..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~-kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA---DV-KYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TC-CEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc---CC-EEEEEEecc
Confidence 445678889999999999888766555432 45 788877654
No 151
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=88.28 E-value=0.45 Score=46.40 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=17.0
Q ss_pred CCcEEEecCCCChhHHHHHHHHHH
Q 006790 35 KGHCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l~ 58 (631)
...+++.+|+|||||. |+-+++
T Consensus 51 ~~~~ll~G~~GtGKT~--la~~la 72 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTL--LAKAVA 72 (285)
T ss_dssp CSEEEEESSSSSSHHH--HHHHHH
T ss_pred CCeEEEECCCCCcHHH--HHHHHH
Confidence 4679999999999998 444443
No 152
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.86 E-value=0.32 Score=45.69 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcCC---cEEEecCCCChhHH
Q 006790 20 EQYSYMLELKRALDAKG---HCLLEMPTGTGKTI 50 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~---~~~iEapTGtGKTl 50 (631)
++.+.++.+.+++..++ .+++.+|+|+|||.
T Consensus 27 g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~ 60 (250)
T 1njg_A 27 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTS 60 (250)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHH
Confidence 46667778888887765 68999999999997
No 153
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=87.49 E-value=1.2 Score=44.20 Aligned_cols=63 Identities=21% Similarity=0.203 Sum_probs=33.5
Q ss_pred eeCCCCCCC--hHHHHHHHHHHHHHhcC----CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 006790 10 VYFPYDNIY--PEQYSYMLELKRALDAK----GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (631)
Q Consensus 10 ~~Fpy~~~r--~~Q~~~~~~v~~~l~~~----~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T 76 (631)
..+.|+.+. +.+......+...+... .++++-+|+|||||. |+-+++...... +. ++++.+..
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~--la~~i~~~~~~~-~~-~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTH--LLQAAGNEAKKR-GY-RVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHH--HHHHHHHHHHHT-TC-CEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHH--HHHHHHHHHHHC-CC-EEEEEEHH
Confidence 344555433 23333333444444432 479999999999997 333333222111 34 67776543
No 154
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=87.26 E-value=1.9 Score=48.88 Aligned_cols=94 Identities=13% Similarity=0.207 Sum_probs=61.1
Q ss_pred HHHHHHHhhcccCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCC-chhhHHHHHHHHHhhcCCCCeEEEE
Q 006790 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRGAVFFS 598 (631)
Q Consensus 520 l~~~i~~~~~~~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~-~~~~~~~l~~fk~~~~~~~~aILfg 598 (631)
+.+.+.++ ...++.+|||...-.+++.+.+.+...+ .....+.+.. ..++..++++|+.. +.+.-.+|++
T Consensus 561 L~~lL~~~-~~~g~kvLIFsq~~~~ld~L~~~L~~~g-------~~~~~i~G~~~~~eR~~~i~~F~~~-~~~~~v~LlS 631 (800)
T 3mwy_W 561 LDQLLTRL-KKDGHRVLIFSQMVRMLDILGDYLSIKG-------INFQRLDGTVPSAQRRISIDHFNSP-DSNDFVFLLS 631 (800)
T ss_dssp HHHHHHHH-TTTTCCEEEEESCHHHHHHHHHHHHHHT-------CCCEEESTTSCHHHHHHHHHTTSST-TCSCCCEEEE
T ss_pred HHHHHHHH-hhCCCeEEEEechHHHHHHHHHHHHhCC-------CCEEEEeCCCCHHHHHHHHHHhhCC-CCCceEEEEe
Confidence 43444433 3446689999999999999998887542 2334454442 23455667776642 0011136666
Q ss_pred EecCcccccccCCCCCceEEEEEcccCC
Q 006790 599 VARGKVAEGIDFDRHYGRLVIMFGVPFQ 626 (631)
Q Consensus 599 v~~Gsf~EGIDf~g~~lr~VII~gLPfp 626 (631)
+ ....||||+++ +..||+...|+-
T Consensus 632 t--~agg~GlNL~~--a~~VI~~D~~wn 655 (800)
T 3mwy_W 632 T--RAGGLGINLMT--ADTVVIFDSDWN 655 (800)
T ss_dssp H--HHHTTTCCCTT--CCEEEESSCCSC
T ss_pred c--ccccCCCCccc--cceEEEecCCCC
Confidence 6 68999999997 899999988874
No 155
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.22 E-value=0.4 Score=44.30 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcC--CcEEEecCCCChhHHH
Q 006790 20 EQYSYMLELKRALDAK--GHCLLEMPTGTGKTIA 51 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~~--~~~~iEapTGtGKTla 51 (631)
+|.+.+..+.+.+..+ .++++.+|+|+|||..
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTAT 54 (226)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHH
T ss_pred CcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 4566777788888776 3699999999999973
No 156
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=86.85 E-value=0.67 Score=46.42 Aligned_cols=33 Identities=33% Similarity=0.327 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHhcC-------CcEEEecCCCChhHHH
Q 006790 19 PEQYSYMLELKRALDAK-------GHCLLEMPTGTGKTIA 51 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~-------~~~~iEapTGtGKTla 51 (631)
-+|.+.+..+...+... .++++.+|+|||||..
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTL 71 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHH
Confidence 35666666666666542 4899999999999983
No 157
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=86.76 E-value=0.79 Score=45.33 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHH
Q 006790 22 YSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 59 (631)
Q Consensus 22 ~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~ 59 (631)
.++...+..+.....++++.+|||||||. ++-++..
T Consensus 12 ~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~--lAr~i~~ 47 (304)
T 1ojl_A 12 QHLLNEIAMVAPSDATVLIHGDSGTGKEL--VARALHA 47 (304)
T ss_dssp HHHHHHHHHHCSTTSCEEEESCTTSCHHH--HHHHHHH
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCchHHH--HHHHHHH
Confidence 33444444444456789999999999998 4434443
No 158
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.64 E-value=2.1 Score=42.23 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCC--cEEEecCCCChhHHHHHH
Q 006790 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALLS 54 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~--~~~iEapTGtGKTla~L~ 54 (631)
+|.+.+..+.+++.+++ +.++.+|.|+|||-....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLE 37 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHH
Confidence 58888999999998876 689999999999875544
No 159
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.32 E-value=1.4 Score=42.04 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHHhc-----------CCcEEEecCCCChhHH
Q 006790 18 YPEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~~-----------~~~~~iEapTGtGKTl 50 (631)
.+.+++.+..+.+.+.. ...+++.+|+|||||.
T Consensus 11 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~ 54 (262)
T 2qz4_A 11 MHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTL 54 (262)
T ss_dssp CHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHH
Confidence 34455555555554432 2468999999999998
No 160
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.20 E-value=0.52 Score=46.77 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHhcCC--cEEEecCCCChhHHHHH
Q 006790 19 PEQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
-+|.+.+..+...+..+. ++++.+|+|+|||...-
T Consensus 28 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 28 VGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp CSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 467888888888888875 79999999999998443
No 161
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=84.99 E-value=0.88 Score=46.71 Aligned_cols=50 Identities=22% Similarity=0.191 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHh--------------cCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEec
Q 006790 19 PEQYSYMLELKRALD--------------AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~--------------~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~ 75 (631)
-+|...++.+.+.+. ...++++.+|+|||||. |+-+++. .. +. +++....
T Consensus 118 iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~--la~aia~--~~--~~-~~~~v~~ 181 (389)
T 3vfd_A 118 AGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTM--LAKAVAA--ES--NA-TFFNISA 181 (389)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHH--HHHHHHH--HT--TC-EEEEECS
T ss_pred CCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHH--HHHHHHH--hh--cC-cEEEeeH
Confidence 466666666666652 13689999999999998 4334432 22 34 5665544
No 162
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.97 E-value=0.55 Score=46.08 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=14.8
Q ss_pred CCcEEEecCCCChhHHH
Q 006790 35 KGHCLLEMPTGTGKTIA 51 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla 51 (631)
...+++.+|+|||||..
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 46799999999999983
No 163
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.88 E-value=1.1 Score=45.55 Aligned_cols=17 Identities=53% Similarity=0.747 Sum_probs=14.6
Q ss_pred CCcEEEecCCCChhHHH
Q 006790 35 KGHCLLEMPTGTGKTIA 51 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla 51 (631)
..++++.+|+|||||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 35799999999999983
No 164
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.88 E-value=0.71 Score=46.39 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCCc--EEEecCCCChhHHHHHH
Q 006790 20 EQYSYMLELKRALDAKGH--CLLEMPTGTGKTIALLS 54 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~~--~~iEapTGtGKTla~L~ 54 (631)
+|.+.+..+..++.+++. +++.+|+|||||....+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 578888899999998864 99999999999874443
No 165
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.81 E-value=1 Score=45.62 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=16.8
Q ss_pred CCcEEEecCCCChhHHHHHHHHHH
Q 006790 35 KGHCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l~ 58 (631)
...+++.+|+|||||. |+-+++
T Consensus 117 ~~~vLl~GppGtGKT~--la~aia 138 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTL--IGKCIA 138 (357)
T ss_dssp CSEEEEESSTTSSHHH--HHHHHH
T ss_pred CceEEEECCCCCCHHH--HHHHHH
Confidence 3579999999999998 443443
No 166
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.64 E-value=1.7 Score=41.40 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=16.7
Q ss_pred CcEEEecCCCChhHHHHHHHHHHH
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSY 59 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~ 59 (631)
..+++.+|+|||||. |+-+++.
T Consensus 46 ~~vll~G~~GtGKT~--la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTL--LAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHH--HHHHHHH
T ss_pred CeEEEECcCCCCHHH--HHHHHHH
Confidence 468999999999997 4444443
No 167
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.20 E-value=1.2 Score=43.64 Aligned_cols=24 Identities=13% Similarity=-0.068 Sum_probs=18.0
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHh
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVL 61 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~ 61 (631)
..+++.+|+|||||. |+-+++...
T Consensus 37 ~~lLl~GppGtGKT~--la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSF--QCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHH--HHHHHHHHH
T ss_pred eEEEEECCCCCCHHH--HHHHHHHHh
Confidence 358899999999998 555555443
No 168
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=84.01 E-value=1.1 Score=44.56 Aligned_cols=39 Identities=28% Similarity=0.233 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHHHHh----------c----CCcEEEecCCCChhHHHHHHHHHH
Q 006790 18 YPEQYSYMLELKRALD----------A----KGHCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~----------~----~~~~~iEapTGtGKTla~L~~~l~ 58 (631)
-.+|.+.++.+.+++. . ...+++.+|+|||||. |+-+++
T Consensus 20 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~--la~aia 72 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSY--LAKAVA 72 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHH--HHHHHH
T ss_pred hcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHH--HHHHHH
Confidence 3566666666666661 1 2469999999999998 444444
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=83.88 E-value=1.8 Score=45.33 Aligned_cols=34 Identities=38% Similarity=0.457 Sum_probs=28.1
Q ss_pred ChHHHHHH---HHHHHHHhcCC--cEEEecCCCChhHHH
Q 006790 18 YPEQYSYM---LELKRALDAKG--HCLLEMPTGTGKTIA 51 (631)
Q Consensus 18 r~~Q~~~~---~~v~~~l~~~~--~~~iEapTGtGKTla 51 (631)
.-+|...+ ..+..++..+. ++++.+|+|||||..
T Consensus 28 ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTL 66 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHH
T ss_pred hCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHH
Confidence 45788887 78888888876 599999999999983
No 170
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=83.71 E-value=2.8 Score=41.52 Aligned_cols=53 Identities=15% Similarity=0.031 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHhcCC---cEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchh
Q 006790 19 PEQYSYMLELKRALDAKG---HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~---~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~ 78 (631)
-+|.+.+..+.+++..+. .+++-+|+|||||...- +++ ... +. +++....+..
T Consensus 29 vg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~--~la--~~l--~~-~~~~i~~~~~ 84 (324)
T 3u61_B 29 ILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAK--ALC--HDV--NA-DMMFVNGSDC 84 (324)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHH--HHH--HHT--TE-EEEEEETTTC
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHH--HHH--HHh--CC-CEEEEccccc
Confidence 467778888888888764 35777779999998443 333 222 34 6777665543
No 171
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.70 E-value=0.4 Score=48.34 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHhcC--CcEEEecCCCChhHHHH
Q 006790 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~--~~~~iEapTGtGKTla~ 52 (631)
-+|.+.++.+..++..+ .++++.+|+|||||...
T Consensus 40 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 45677788888888887 67999999999998743
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=83.69 E-value=1.2 Score=44.21 Aligned_cols=32 Identities=34% Similarity=0.339 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHh-------cCCcEEEecCCCChhHHH
Q 006790 20 EQYSYMLELKRALD-------AKGHCLLEMPTGTGKTIA 51 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~-------~~~~~~iEapTGtGKTla 51 (631)
+|...+..+.+.+. ...++++.+|+|||||..
T Consensus 16 g~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 16 GQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHH
T ss_pred CHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHH
Confidence 34444445544443 125799999999999983
No 173
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=83.67 E-value=1.2 Score=50.31 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHhcCC-----------cEEEecCCCChhHHHHHHHHHHHHh
Q 006790 19 PEQYSYMLELKRALDAKG-----------HCLLEMPTGTGKTIALLSLITSYVL 61 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~-----------~~~iEapTGtGKTla~L~~~l~~~~ 61 (631)
-+|.+.+..+.+++.... ++++.+|||||||. |.-+++...
T Consensus 494 iGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~--lA~ala~~l 545 (758)
T 3pxi_A 494 IGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE--LARALAESI 545 (758)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHH--HHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHH--HHHHHHHHh
Confidence 357788888888886532 59999999999998 443444443
No 174
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.59 E-value=1.7 Score=42.79 Aligned_cols=17 Identities=35% Similarity=0.313 Sum_probs=14.6
Q ss_pred CcEEEecCCCChhHHHH
Q 006790 36 GHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~ 52 (631)
.++++.+|+|||||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36999999999999844
No 175
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.51 E-value=2.4 Score=42.97 Aligned_cols=17 Identities=41% Similarity=0.258 Sum_probs=14.6
Q ss_pred CcEEEecCCCChhHHHH
Q 006790 36 GHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~ 52 (631)
.++++.+|+|||||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46999999999999843
No 176
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.44 E-value=0.78 Score=45.26 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=17.0
Q ss_pred CCcEEEecCCCChhHHHHHHHHHH
Q 006790 35 KGHCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l~ 58 (631)
+..+++.+|+|||||. |+-+++
T Consensus 49 ~~~vLL~Gp~GtGKT~--la~ala 70 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTL--LAKAIA 70 (301)
T ss_dssp CSEEEEECSSSSSHHH--HHHHHH
T ss_pred CceEEEECCCCcCHHH--HHHHHH
Confidence 4579999999999998 444444
No 177
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=83.43 E-value=1.2 Score=46.70 Aligned_cols=38 Identities=29% Similarity=0.290 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcC----CcEEEecCCCChhHHHHHHHHHHHH
Q 006790 21 QYSYMLELKRALDAK----GHCLLEMPTGTGKTIALLSLITSYV 60 (631)
Q Consensus 21 Q~~~~~~v~~~l~~~----~~~~iEapTGtGKTla~L~~~l~~~ 60 (631)
.++.+..+.+.+..+ .++++.+|+|||||. |+-+++..
T Consensus 45 ~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~--la~ala~~ 86 (456)
T 2c9o_A 45 AREACGVIVELIKSKKMAGRAVLLAGPPGTGKTA--LALAIAQE 86 (456)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHH--HHHHHHHH
Confidence 333344455555554 479999999999998 43344443
No 178
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.22 E-value=0.75 Score=43.55 Aligned_cols=50 Identities=20% Similarity=0.096 Sum_probs=30.4
Q ss_pred HhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHH
Q 006790 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (631)
Q Consensus 32 l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~ 85 (631)
+..|...+|.|++|+|||.-.+--+...+... ++ +++|.|-..+ .+|+++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~-~v~~~s~E~~-~~~~~~ 76 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GE-PGVFVTLEER-ARDLRR 76 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CC-CEEEEESSSC-HHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CC-CceeecccCC-HHHHHH
Confidence 34467899999999999975554333333332 35 6777654433 344444
No 179
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=83.06 E-value=0.47 Score=47.74 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=25.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHh--cCCcEEEecCCCChhHH
Q 006790 12 FPYDNIYPEQYSYMLELKRALD--AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 12 Fpy~~~r~~Q~~~~~~v~~~l~--~~~~~~iEapTGtGKTl 50 (631)
+.|+. -.+|..+...+..+.. ...++++.+|+|||||.
T Consensus 21 ~~f~~-i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~ 60 (350)
T 1g8p_A 21 FPFSA-IVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKST 60 (350)
T ss_dssp CCGGG-SCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTH
T ss_pred CCchh-ccChHHHHHHHHHHhhCCCCceEEEECCCCccHHH
Confidence 44443 3455565555444443 34689999999999998
No 180
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.98 E-value=1.3 Score=44.85 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHhcCC----cEEEecCCCChhHHHHH
Q 006790 19 PEQYSYMLELKRALDAKG----HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~----~~~iEapTGtGKTla~L 53 (631)
+.+++.+..+.+.+..+. ++++.+|+|||||...-
T Consensus 50 ~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 50 LAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 444555555677776653 69999999999998443
No 181
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=82.45 E-value=0.84 Score=48.21 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHhc--CCcEEEecCCCChhHHHH
Q 006790 19 PEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~--~~~~~iEapTGtGKTla~ 52 (631)
-+|.+.++.+.+.+.. ..++++.+|+|||||...
T Consensus 183 iGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 183 IGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp CCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred cCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 4566777778888854 468999999999999843
No 182
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.36 E-value=1.3 Score=46.05 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=22.7
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEec
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~ 75 (631)
+.+++-+|+|||||+ |+-|++... +. +++..+.
T Consensus 216 rGvLLyGPPGTGKTl--lAkAiA~e~----~~-~f~~v~~ 248 (434)
T 4b4t_M 216 KGALMYGPPGTGKTL--LARACAAQT----NA-TFLKLAA 248 (434)
T ss_dssp CEEEEESCTTSSHHH--HHHHHHHHH----TC-EEEEEEG
T ss_pred CeeEEECcCCCCHHH--HHHHHHHHh----CC-CEEEEeh
Confidence 468999999999999 665665433 33 5555443
No 183
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=82.30 E-value=1.5 Score=45.70 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhc----------------CCcEEEecCCCChhHHHHHHHHHH
Q 006790 20 EQYSYMLELKRALDA----------------KGHCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~----------------~~~~~iEapTGtGKTla~L~~~l~ 58 (631)
+|.++-+.+..++.+ ..++++.+|+|||||. |.-+++
T Consensus 19 Gqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~--lar~lA 71 (444)
T 1g41_A 19 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTE--IARRLA 71 (444)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHH--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHH--HHHHHH
Confidence 566666666666632 3579999999999998 443444
No 184
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=82.15 E-value=3.5 Score=41.76 Aligned_cols=16 Identities=44% Similarity=0.538 Sum_probs=14.2
Q ss_pred cEEEecCCCChhHHHH
Q 006790 37 HCLLEMPTGTGKTIAL 52 (631)
Q Consensus 37 ~~~iEapTGtGKTla~ 52 (631)
+++|.+|+|||||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999843
No 185
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.11 E-value=1.3 Score=45.92 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=23.2
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T 76 (631)
+-+++.+|+|||||+ |+-|++... +. +++..+.+
T Consensus 207 rGiLL~GPPGtGKT~--lakAiA~~~----~~-~~~~v~~~ 240 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTM--LVKAVANST----KA-AFIRVNGS 240 (428)
T ss_dssp CEEEEESCTTTTHHH--HHHHHHHHH----TC-EEEEEEGG
T ss_pred ceEEEECCCCCCHHH--HHHHHHHHh----CC-CeEEEecc
Confidence 348999999999999 666665443 33 55555433
No 186
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=82.05 E-value=1.3 Score=48.55 Aligned_cols=33 Identities=33% Similarity=0.319 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEecCCCChhHHH
Q 006790 19 PEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla 51 (631)
-+|...++.+..++..+.++++.+|+|||||..
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHH
Confidence 367888999999999999999999999999873
No 187
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.94 E-value=1.3 Score=45.91 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=22.9
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEec
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~ 75 (631)
+-+++-+|+|||||+ |+-|++... +- +++..+.
T Consensus 216 rGvLL~GPPGtGKTl--lAkAiA~e~----~~-~~~~v~~ 248 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTL--LAKAVAATI----GA-NFIFSPA 248 (437)
T ss_dssp CEEEEESCTTSSHHH--HHHHHHHHH----TC-EEEEEEG
T ss_pred CeEEEECCCCCcHHH--HHHHHHHHh----CC-CEEEEeh
Confidence 468999999999999 555665433 33 5555543
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=81.76 E-value=1.4 Score=44.66 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=16.1
Q ss_pred CcEEEecCCCChhHHHHHHHHHH
Q 006790 36 GHCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~ 58 (631)
..+++.+|+|||||. |+-+++
T Consensus 85 ~~iLL~GppGtGKT~--la~ala 105 (355)
T 2qp9_X 85 SGILLYGPPGTGKSY--LAKAVA 105 (355)
T ss_dssp CCEEEECSTTSCHHH--HHHHHH
T ss_pred ceEEEECCCCCcHHH--HHHHHH
Confidence 468999999999998 443444
No 189
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.47 E-value=1.5 Score=44.84 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=22.8
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEec
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~ 75 (631)
+.+++-+|+|||||+ |+-|++... +. +++....
T Consensus 183 rGvLL~GPPGTGKTl--lAkAiA~e~----~~-~f~~v~~ 215 (405)
T 4b4t_J 183 KGVILYGPPGTGKTL--LARAVAHHT----DC-KFIRVSG 215 (405)
T ss_dssp CCEEEESCSSSSHHH--HHHHHHHHH----TC-EEEEEEG
T ss_pred CceEEeCCCCCCHHH--HHHHHHHhh----CC-CceEEEh
Confidence 568999999999999 655665433 33 5555443
No 190
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=80.46 E-value=1.3 Score=44.94 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHhcCC---cEEEecCCCChhHHHH
Q 006790 19 PEQYSYMLELKRALDAKG---HCLLEMPTGTGKTIAL 52 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~---~~~iEapTGtGKTla~ 52 (631)
-+|.+.+..+.+++..++ .+++.+|+|||||...
T Consensus 19 vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHH
T ss_pred cCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHH
Confidence 457788888888888775 3799999999999843
No 191
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=80.34 E-value=1.1 Score=44.88 Aligned_cols=31 Identities=42% Similarity=0.485 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcC-------CcEEEecCCCChhHH
Q 006790 20 EQYSYMLELKRALDAK-------GHCLLEMPTGTGKTI 50 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~~-------~~~~iEapTGtGKTl 50 (631)
+|......+..++..+ .++++-+|+|+|||.
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTT 66 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTT 66 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHH
Confidence 4566666666666554 689999999999987
No 192
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=80.21 E-value=0.95 Score=43.55 Aligned_cols=21 Identities=43% Similarity=0.561 Sum_probs=16.0
Q ss_pred CcEEEecCCCChhHHHHHHHHHH
Q 006790 36 GHCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~ 58 (631)
..+++.+|+|||||. |+-+++
T Consensus 45 ~~vll~G~~GtGKT~--la~~la 65 (268)
T 2r62_A 45 KGVLLVGPPGTGKTL--LAKAVA 65 (268)
T ss_dssp SCCCCBCSSCSSHHH--HHHHHH
T ss_pred ceEEEECCCCCcHHH--HHHHHH
Confidence 458999999999998 443444
No 193
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=80.09 E-value=1.8 Score=39.45 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=29.4
Q ss_pred cCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 006790 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T 76 (631)
.+...++-+|.|+|||.+.|--+..+.. . +. +|++.+++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~-~--g~-kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI-A--KQ-KIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-T--TC-CEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-C--CC-EEEEEEec
Confidence 3567889999999999988876555543 2 46 88888876
No 194
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=79.80 E-value=1.2 Score=44.27 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=16.2
Q ss_pred CcEEEecCCCChhHHHHHHHHHH
Q 006790 36 GHCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~ 58 (631)
+.+++.+|+|||||. |+-+++
T Consensus 46 ~~iLL~GppGtGKT~--la~ala 66 (322)
T 1xwi_A 46 RGILLFGPPGTGKSY--LAKAVA 66 (322)
T ss_dssp SEEEEESSSSSCHHH--HHHHHH
T ss_pred ceEEEECCCCccHHH--HHHHHH
Confidence 468999999999998 443443
No 195
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=79.60 E-value=0.88 Score=44.89 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcCC--cEEEecCCCChhHHHHH
Q 006790 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
+|.+.+..+.+.+..+. ++++.+|+|||||...-
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp SCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHH
Confidence 57788888888887764 79999999999997443
No 196
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=79.50 E-value=3.3 Score=52.85 Aligned_cols=57 Identities=21% Similarity=0.155 Sum_probs=43.0
Q ss_pred EEEcCeEeeCCCCCC--------ChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHh
Q 006790 3 FKLEDVTVYFPYDNI--------YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL 61 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~--------r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~ 61 (631)
+.+.+.++.|+||.. .|.=.+....+..|+..+..+++++|+|||||- ++-+++.+.
T Consensus 605 v~~~~~~~~YgyEYlG~~~rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe--~vk~LA~~l 669 (2695)
T 4akg_A 605 ISQSGYLLQYKFEYIGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTE--TVKAFGQNL 669 (2695)
T ss_dssp EEETTEEEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHH--HHHHHHHTT
T ss_pred EEEcCeEeeccccccCCCCcceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHH--HHHHHHHHh
Confidence 567788888888831 344466777888899988899999999999998 444455443
No 197
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=79.33 E-value=2.9 Score=45.83 Aligned_cols=70 Identities=19% Similarity=0.064 Sum_probs=49.4
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCCchhhHHHHHHHHHhhcCCCCeEEEEEecCcccccccC
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGIDf 610 (631)
.++.+|||+++.+..+.+++.++..++ +...+ ..+.... +| .+++..||+++ ..+..|||+
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~-------~v~~l-HG~l~q~-----er----~~~~~~VLVAT--dVaerGIDI 455 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGI-------NAVAY-YRGLDVS-----VI----PTIGDVVVVAT--DALMTGYTG 455 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTC-------CEEEE-CTTSCGG-----GS----CSSSCEEEEEC--TTHHHHCCC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCC-------cEEEe-cCCCCHH-----HH----HhCCCcEEEEC--ChHHccCCC
Confidence 578899999999999999999986531 22223 2322211 12 22445899999 789999998
Q ss_pred CCCCceEEEEEc
Q 006790 611 DRHYGRLVIMFG 622 (631)
Q Consensus 611 ~g~~lr~VII~g 622 (631)
+ .+.||..|
T Consensus 456 d---V~~VI~~G 464 (666)
T 3o8b_A 456 D---FDSVIDCN 464 (666)
T ss_dssp C---BSEEEECC
T ss_pred C---CcEEEecC
Confidence 3 99999766
No 198
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.52 E-value=2.6 Score=45.03 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=22.6
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T 76 (631)
..+++.+|+|||||...- +++ ... +. +++....+
T Consensus 78 ~~lLL~GppGtGKTtla~--~la--~~l--~~-~~i~in~s 111 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH--LVA--QEL--GY-DILEQNAS 111 (516)
T ss_dssp SEEEEECSTTSSHHHHHH--HHH--HHT--TC-EEEEECTT
T ss_pred cEEEEECCCCCCHHHHHH--HHH--HHc--CC-CEEEEeCC
Confidence 579999999999998443 333 222 34 67666544
No 199
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=78.42 E-value=1.8 Score=43.81 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHh------cCCcEEEecCCCChhHHHH
Q 006790 19 PEQYSYMLELKRALD------AKGHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~------~~~~~~iEapTGtGKTla~ 52 (631)
.++.+-+..+.+.+. .+.++++-+|+|||||...
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 445555556665552 2358999999999999843
No 200
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=77.74 E-value=2.8 Score=37.77 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=27.6
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecch
Q 006790 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~ 77 (631)
+...++-+|.|+|||...+--+..+.. . +. ++++.++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~-~--g~-~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL-G--KK-KVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-T--TC-EEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH-C--CC-eEEEEeecc
Confidence 567889999999999987755444433 2 45 788877763
No 201
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=77.72 E-value=2.8 Score=39.38 Aligned_cols=49 Identities=22% Similarity=0.181 Sum_probs=29.4
Q ss_pred HhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHH
Q 006790 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (631)
Q Consensus 32 l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~ 85 (631)
+..|...++-+|+|+|||.-.+.-+...+.. +. +++|.+-..+ ..++.+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~-~v~~~~~e~~-~~~~~~ 68 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GE-PGIYVALEEH-PVQVRQ 68 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSSC-HHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CC-eEEEEEccCC-HHHHHH
Confidence 4556789999999999998544433333332 34 5666543332 244444
No 202
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.56 E-value=2.1 Score=44.60 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=18.2
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHH
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYV 60 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~ 60 (631)
+.+|+.+|+|||||+ |+-|++..
T Consensus 244 rGILLyGPPGTGKTl--LAkAiA~e 266 (467)
T 4b4t_H 244 KGILLYGPPGTGKTL--CARAVANR 266 (467)
T ss_dssp SEEEECSCTTSSHHH--HHHHHHHH
T ss_pred CceEeeCCCCCcHHH--HHHHHHhc
Confidence 568999999999998 66566543
No 203
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.11 E-value=2.4 Score=43.68 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHHHH-Hhc-----------CCcEEEecCCCChhHHHHHHHHHHHH
Q 006790 18 YPEQYSYMLELKRA-LDA-----------KGHCLLEMPTGTGKTIALLSLITSYV 60 (631)
Q Consensus 18 r~~Q~~~~~~v~~~-l~~-----------~~~~~iEapTGtGKTla~L~~~l~~~ 60 (631)
...|++-+...... +.. .+-+++-+|+|||||+ |+-|++..
T Consensus 187 ld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTl--LAkAiA~e 239 (437)
T 4b4t_I 187 LESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL--LAKAVANQ 239 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHH--HHHHHHHH
Confidence 35666666555543 221 2458999999999999 55556543
No 204
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=77.08 E-value=2.4 Score=40.79 Aligned_cols=16 Identities=44% Similarity=0.474 Sum_probs=14.1
Q ss_pred CcEEEecCCCChhHHH
Q 006790 36 GHCLLEMPTGTGKTIA 51 (631)
Q Consensus 36 ~~~~iEapTGtGKTla 51 (631)
.++++.+|+|||||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4799999999999983
No 205
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=77.05 E-value=1.9 Score=42.74 Aligned_cols=53 Identities=9% Similarity=0.112 Sum_probs=32.6
Q ss_pred HHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHH
Q 006790 28 LKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (631)
Q Consensus 28 v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~ 85 (631)
+...+..|...+|-|++|+|||.-.+.-+...+.. +. +|+|.+--. -.+|+..
T Consensus 61 ~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~-~vl~~slE~-s~~~l~~ 113 (315)
T 3bh0_A 61 MTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD-VVNLHSLEM-GKKENIK 113 (315)
T ss_dssp HHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TC-EEEEEESSS-CHHHHHH
T ss_pred hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CC-eEEEEECCC-CHHHHHH
Confidence 33345556789999999999997555544444432 35 777665432 2344443
No 206
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=76.95 E-value=1.2 Score=50.12 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhcC-----------CcEEEecCCCChhHHHH
Q 006790 20 EQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~~-----------~~~~iEapTGtGKTla~ 52 (631)
+|.+.+..+.+++... .++++.+|||||||...
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 5667777777777542 26899999999999833
No 207
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=76.93 E-value=2.1 Score=43.33 Aligned_cols=31 Identities=32% Similarity=0.335 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCcEEEecCCCChhHHHHHHHHH
Q 006790 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLIT 57 (631)
Q Consensus 25 ~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l 57 (631)
+..+.-++..|..++|-+|||+|||- |+-++
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKST--ll~~l 195 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTT--LMKAL 195 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHH--HHHHH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHH--HHHHH
Confidence 37777788899999999999999986 44444
No 208
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=76.84 E-value=2.6 Score=36.53 Aligned_cols=38 Identities=13% Similarity=-0.002 Sum_probs=23.8
Q ss_pred cCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEec
Q 006790 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~ 75 (631)
.+..+++-+|+|+|||- |+-++...... .+. ++++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTt--L~~~i~~~~~~-~g~-~~~~~~~ 72 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSH--LLQAWVAQALE-AGK-NAAYIDA 72 (149)
T ss_dssp CCSEEEEESSSTTTTCH--HHHHHHHHHHT-TTC-CEEEEET
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHHHHh-cCC-cEEEEcH
Confidence 67789999999999976 33333322222 244 5666544
No 209
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=76.61 E-value=1.6 Score=49.29 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHhcC--CcEEEecCCCChhHHHH
Q 006790 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~--~~~~iEapTGtGKTla~ 52 (631)
-+|.+.++.+.+.+..+ .++++.+|+|||||...
T Consensus 183 iG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 183 IGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp CCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred cCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 46777788888888554 58999999999999843
No 210
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=76.59 E-value=1.7 Score=45.50 Aligned_cols=38 Identities=29% Similarity=0.193 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHh--------------cCCcEEEecCCCChhHHHHHHHHHH
Q 006790 19 PEQYSYMLELKRALD--------------AKGHCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~--------------~~~~~~iEapTGtGKTla~L~~~l~ 58 (631)
-+|.+....+.+++. ....+++.+|+|||||. |+-+++
T Consensus 137 ~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~--lA~aia 188 (444)
T 2zan_A 137 AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSY--LAKAVA 188 (444)
T ss_dssp CSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHH--HHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHH--HHHHHH
Confidence 355566666666551 12569999999999998 443443
No 211
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=76.28 E-value=6.3 Score=40.98 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=22.9
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHH--hhCCCCCceEEEEecc
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYV--LSKPENPVKLIYCTRT 76 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~--~~~~~~~~~vi~~t~T 76 (631)
.++++-+|+|+|||.. +-+++.. ...+ +. ++++.+..
T Consensus 131 ~~lll~Gp~G~GKTtL--a~aia~~l~~~~~-~~-~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHL--LQSIGNYVVQNEP-DL-RVMYITSE 169 (440)
T ss_dssp CCEEEECSSSSSHHHH--HHHHHHHHHHHCC-SS-CEEEEEHH
T ss_pred CeEEEECCCCCCHHHH--HHHHHHHHHHhCC-CC-eEEEeeHH
Confidence 4799999999999873 3333322 2222 34 67776543
No 212
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=76.25 E-value=2.6 Score=40.43 Aligned_cols=21 Identities=29% Similarity=0.102 Sum_probs=16.5
Q ss_pred cEEEecCCCChhHHHHHHHHHHH
Q 006790 37 HCLLEMPTGTGKTIALLSLITSY 59 (631)
Q Consensus 37 ~~~iEapTGtGKTla~L~~~l~~ 59 (631)
.+++-+|+|||||+-.. ||+.
T Consensus 106 ~~~l~GppgtGKt~~a~--ala~ 126 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAE--AIAH 126 (267)
T ss_dssp EEEEECSTTSSHHHHHH--HHHH
T ss_pred EEEEECCCCCCHHHHHH--HHHh
Confidence 69999999999999444 4543
No 213
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=75.80 E-value=1.6 Score=40.15 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.0
Q ss_pred CcEEEecCCCChhHHHHH
Q 006790 36 GHCLLEMPTGTGKTIALL 53 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L 53 (631)
+++++-+|+|||||...+
T Consensus 59 n~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp SEEEEESCGGGCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 369999999999998544
No 214
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=75.07 E-value=3.5 Score=42.61 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEecCCCChhHH
Q 006790 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
.+.+...+..+. ...++.++|-+|||+|||-
T Consensus 152 ~~~~~~~L~~l~--~~~ggii~I~GpnGSGKTT 182 (418)
T 1p9r_A 152 TAHNHDNFRRLI--KRPHGIILVTGPTGSGKST 182 (418)
T ss_dssp CHHHHHHHHHHH--TSSSEEEEEECSTTSCHHH
T ss_pred CHHHHHHHHHHH--HhcCCeEEEECCCCCCHHH
Confidence 345666666662 2445688999999999976
No 215
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=74.59 E-value=1.8 Score=49.42 Aligned_cols=39 Identities=28% Similarity=0.292 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcC-----------CcEEEecCCCChhHHHHHHHHHHHH
Q 006790 20 EQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIALLSLITSYV 60 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~~-----------~~~~iEapTGtGKTla~L~~~l~~~ 60 (631)
+|.+.+..+..++... .++++.+|||||||. |+-+++..
T Consensus 562 G~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~--lA~~la~~ 611 (854)
T 1qvr_A 562 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTE--LAKTLAAT 611 (854)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHH--HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHH--HHHHHHHH
Confidence 5666777777777542 368999999999998 43344443
No 216
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=74.43 E-value=2.1 Score=44.74 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=34.1
Q ss_pred HHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHH
Q 006790 27 ELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (631)
Q Consensus 27 ~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~ 85 (631)
.+...+..|...+|-|++|+|||.-.+--+...+... +. +|+|.+--.+ .+|+..
T Consensus 192 ~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~-~vl~~slE~~-~~~l~~ 246 (444)
T 2q6t_A 192 QLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE--GV-GVGIYSLEMP-AAQLTL 246 (444)
T ss_dssp HHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CC-CEEEEESSSC-HHHHHH
T ss_pred hhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CC-eEEEEECCCC-HHHHHH
Confidence 3334455667899999999999986666555555432 45 6666544322 234443
No 217
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=74.37 E-value=2.2 Score=44.51 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=30.7
Q ss_pred HHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 006790 30 RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (631)
Q Consensus 30 ~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T 76 (631)
..|..|...+|-|++|+|||.-.|--|...+.. +. +|+|.+--
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~-~vl~fSlE 234 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD-VVNLHSLE 234 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TC-EEEEECSS
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CC-EEEEEECC
Confidence 345566789999999999998777666665553 45 77776543
No 218
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=74.20 E-value=4.5 Score=42.77 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=16.6
Q ss_pred CcEEEecCCCChhHHHHHHHHHH
Q 006790 36 GHCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~ 58 (631)
..+++.+|+|||||+ |+-+++
T Consensus 239 ~~vLL~GppGtGKT~--lAraia 259 (489)
T 3hu3_A 239 RGILLYGPPGTGKTL--IARAVA 259 (489)
T ss_dssp CEEEEECSTTSSHHH--HHHHHH
T ss_pred CcEEEECcCCCCHHH--HHHHHH
Confidence 579999999999998 444443
No 219
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=74.07 E-value=2 Score=44.53 Aligned_cols=44 Identities=20% Similarity=0.131 Sum_probs=32.6
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHH
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~ 88 (631)
+..++.||.|+|||....-- + . .+ +++|.|+|+++.+.+.+.++
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~----~--~--~~-~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSR----V--N--FE-EDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHH----C--C--TT-TCEEEESCHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHH----h--c--cC-CeEEEeCCHHHHHHHHHHhh
Confidence 36789999999999955421 1 1 24 78999999999877766543
No 220
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=74.02 E-value=2.3 Score=44.54 Aligned_cols=55 Identities=9% Similarity=0.169 Sum_probs=34.1
Q ss_pred HHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHH
Q 006790 27 ELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (631)
Q Consensus 27 ~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~ 85 (631)
.+...+..|...+|-|++|+|||.-.+.-+...+... +. +|+|.+--.+- .|+..
T Consensus 195 ~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~-~Vl~~s~E~s~-~~l~~ 249 (454)
T 2r6a_A 195 RMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NE-NVAIFSLEMSA-QQLVM 249 (454)
T ss_dssp HHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SC-CEEEEESSSCH-HHHHH
T ss_pred hhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CC-cEEEEECCCCH-HHHHH
Confidence 3333455567899999999999986665555554433 45 67776644332 34443
No 221
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=73.75 E-value=2.1 Score=45.49 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCChhHH
Q 006790 23 SYMLELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 23 ~~~~~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
+++..+.-++..+.++++-+|||+|||-
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTT 275 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTT 275 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHH
Confidence 3455666677888899999999999986
No 222
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=73.75 E-value=1.9 Score=42.99 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEecCCCChhHH
Q 006790 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
|+.+.+ .+.+++..+..++|.+|.|+|||.
T Consensus 17 R~~el~---~L~~~l~~~~~v~i~G~~G~GKT~ 46 (350)
T 2qen_A 17 REEESR---KLEESLENYPLTLLLGIRRVGKSS 46 (350)
T ss_dssp CHHHHH---HHHHHHHHCSEEEEECCTTSSHHH
T ss_pred hHHHHH---HHHHHHhcCCeEEEECCCcCCHHH
Confidence 555544 445556667899999999999998
No 223
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=73.70 E-value=1 Score=49.16 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhcCC-------------cEEEecCCCChhHH
Q 006790 20 EQYSYMLELKRALDAKG-------------HCLLEMPTGTGKTI 50 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~-------------~~~iEapTGtGKTl 50 (631)
+|.+.-..+..++..+. ++++.+|+|||||.
T Consensus 299 G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 299 GHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQ 342 (595)
T ss_dssp CCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHH
T ss_pred ChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHH
Confidence 45555555555565554 89999999999998
No 224
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=73.33 E-value=4.3 Score=38.45 Aligned_cols=39 Identities=28% Similarity=0.266 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHHHhc-----------CCcEEEecCCCChhHHHHHHHHHH
Q 006790 18 YPEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~~-----------~~~~~iEapTGtGKTla~L~~~l~ 58 (631)
.+.+.+-++.+...+.. ...+++.+|+|+|||. |+-+++
T Consensus 21 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTt--l~~~i~ 70 (254)
T 1ixz_A 21 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTH--LARAVA 70 (254)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHH--HHHHHH
T ss_pred cHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHH--HHHHHH
Confidence 34555555555555432 1348999999999997 444444
No 225
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=73.27 E-value=2.7 Score=42.03 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=32.1
Q ss_pred HHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 006790 27 ELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (631)
Q Consensus 27 ~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T 76 (631)
.+...|..|...+|-|++|+|||.-.+--|...+. . +. +|.|.+--
T Consensus 38 ~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~--g~-~Vl~fSlE 83 (338)
T 4a1f_A 38 NYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-D--DR-GVAVFSLE 83 (338)
T ss_dssp HHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-T--TC-EEEEEESS
T ss_pred HHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c--CC-eEEEEeCC
Confidence 33345666788999999999999866665555554 2 45 77766543
No 226
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.22 E-value=2.4 Score=41.73 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcCC--cEEEecCCCChhHHHH
Q 006790 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIAL 52 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~--~~~iEapTGtGKTla~ 52 (631)
+|.+.+..+.+.+.++. ++++.+|+|+|||...
T Consensus 25 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHH
Confidence 46777778888887764 5999999999999743
No 227
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=72.77 E-value=6.8 Score=41.16 Aligned_cols=39 Identities=31% Similarity=0.308 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHhc-----------CCcEEEecCCCChhHHHHHHHHHHH
Q 006790 19 PEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIALLSLITSY 59 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~-----------~~~~~iEapTGtGKTla~L~~~l~~ 59 (631)
..+++-+..+.+.+.. .+.+++.+|+|||||+ |+-+++.
T Consensus 22 ~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~--Laraia~ 71 (476)
T 2ce7_A 22 EEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTL--LARAVAG 71 (476)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHH--HHHHHHH
Confidence 4444445555555542 2458999999999998 4444543
No 228
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=71.25 E-value=3.6 Score=42.73 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=27.3
Q ss_pred CCcEEEecCCCChhHHHH--HHHHHHHHhhCCCCCceEEEEecchhh
Q 006790 35 KGHCLLEMPTGTGKTIAL--LSLITSYVLSKPENPVKLIYCTRTVHE 79 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~--L~~~l~~~~~~~~~~~~vi~~t~T~~l 79 (631)
..|++|-||||+|||..+ +++. +... +. ++||.=+.-..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~---~~~~--g~-~viv~Dpkge~ 93 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYT---GLLR--GD-RMVIVDPNGDM 93 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHH---HHHT--TC-EEEEEEETTHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH---HHHC--CC-cEEEEeCCCch
Confidence 468999999999999975 4432 2222 45 78887776554
No 229
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=71.07 E-value=6 Score=41.65 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=39.3
Q ss_pred cCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHHhh
Q 006790 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~~l 90 (631)
.+....+.+-||+|||+ +++.+. ... ++ +++|.|++..+..|+.+||+.+
T Consensus 13 ~~~~~~l~g~~gs~ka~--~~a~l~--~~~--~~-p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 13 AGEQRLLGELTGAACAT--LVAEIA--ERH--AG-PVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp TTCEEEEECCCTTHHHH--HHHHHH--HHS--SS-CEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCCCchHHHH--HHHHHH--HHh--CC-CEEEEeCCHHHHHHHHHHHHhh
Confidence 34578899999999998 444443 222 35 7999999999999999999976
No 230
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=70.86 E-value=2.1 Score=45.49 Aligned_cols=52 Identities=8% Similarity=-0.035 Sum_probs=32.3
Q ss_pred HHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHH
Q 006790 30 RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (631)
Q Consensus 30 ~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~ 85 (631)
..+..|...+|-|++|+|||.-.+--+...+... +. +|+|.+--.+ -+|++.
T Consensus 237 gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~-~vl~~s~E~s-~~~l~~ 288 (503)
T 1q57_A 237 LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GK-KVGLAMLEES-VEETAE 288 (503)
T ss_dssp CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CC-CEEEEESSSC-HHHHHH
T ss_pred cccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CC-cEEEEeccCC-HHHHHH
Confidence 3455677899999999999996666555544322 44 5666543322 234444
No 231
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=70.44 E-value=2.4 Score=46.29 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHH
Q 006790 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~ 85 (631)
+...|.+.++.+.++.. ++.++.|+-|.|||- .+--+++.+. . +++|+.||+.-...+.+
T Consensus 176 ~T~dQ~~al~~~~~~~~--~~~vlta~RGRGKSa-~lG~~~a~~~-----~-~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMPP--GVAAVTAARGRGKSA-LAGQLISRIA-----G-RAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp CCHHHHHHHHHHTTCCS--EEEEEEECTTSSHHH-HHHHHHHHSS-----S-CEEEECSSCCSCHHHHH
T ss_pred CCHHHHHHHHHHHHhhh--CeEEEecCCCCCHHH-HHHHHHHHHH-----h-CcEEECCCHHHHHHHHH
Confidence 36788888877666543 568999999999994 3333343331 3 57999999887776655
No 232
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=70.03 E-value=5.7 Score=38.28 Aligned_cols=39 Identities=28% Similarity=0.250 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHhc-----------CCcEEEecCCCChhHHHHHHHHHHH
Q 006790 19 PEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIALLSLITSY 59 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~-----------~~~~~iEapTGtGKTla~L~~~l~~ 59 (631)
+.+++-+..+...+.. ...+++-+|+|||||. |+-+++.
T Consensus 46 ~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTt--l~~~i~~ 95 (278)
T 1iy2_A 46 EEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTH--LARAVAG 95 (278)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHH--HHHHHHH
Confidence 4555556666555532 1248999999999997 4444443
No 233
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=69.70 E-value=3.3 Score=37.93 Aligned_cols=18 Identities=39% Similarity=0.783 Sum_probs=14.9
Q ss_pred cEEEecCCCChhHHHHHH
Q 006790 37 HCLLEMPTGTGKTIALLS 54 (631)
Q Consensus 37 ~~~iEapTGtGKTla~L~ 54 (631)
+.++.+|+|||||+....
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 578999999999996543
No 234
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.30 E-value=5.4 Score=40.13 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhc------CCcEEEecCCCChhHHHH
Q 006790 20 EQYSYMLELKRALDA------KGHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~------~~~~~iEapTGtGKTla~ 52 (631)
++.+-++.+.+.+.. +..++|.+|+|+|||...
T Consensus 24 gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 24 HREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp TCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 344444455555543 457999999999999843
No 235
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=68.76 E-value=3.6 Score=40.10 Aligned_cols=48 Identities=8% Similarity=0.026 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEec
Q 006790 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (631)
Q Consensus 25 ~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~ 75 (631)
+..+.-.+..|...+|-||+|+|||.-.+.-+...+... +. +|+|.+.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~-~v~~~~~ 72 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM--GK-KVGLAML 72 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS--CC-CEEEEES
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc--CC-eEEEEeC
Confidence 445555567788999999999999875444333333322 44 6766544
No 236
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.67 E-value=3.3 Score=41.27 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCcEEEecCCCChhHH
Q 006790 24 YMLELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 24 ~~~~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
+...+.-.+..++.+++-+|||+|||-
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHH
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHH
Confidence 566777788889999999999999987
No 237
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=68.57 E-value=5.4 Score=39.53 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=18.0
Q ss_pred hcCCcEEEecCCCChhHHHHHHHH
Q 006790 33 DAKGHCLLEMPTGTGKTIALLSLI 56 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTla~L~~~ 56 (631)
..+...+|-+|+|+|||.-.+.-+
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHH
Confidence 335678999999999988555433
No 238
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=68.00 E-value=2.7 Score=38.68 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=17.4
Q ss_pred HhcCCcEEEecCCCChhHHHHH
Q 006790 32 LDAKGHCLLEMPTGTGKTIALL 53 (631)
Q Consensus 32 l~~~~~~~iEapTGtGKTla~L 53 (631)
+..|...++-+|+|+|||.-.+
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHH
Confidence 4456789999999999987433
No 239
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=67.95 E-value=6.1 Score=41.82 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=27.0
Q ss_pred cCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecch
Q 006790 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~ 77 (631)
++.|++|-++||+|||...-.-..+.+.....+..++++.=+..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 35789999999999998654433332322222344666665553
No 240
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=67.40 E-value=5.6 Score=36.73 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=28.6
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecch
Q 006790 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~ 77 (631)
+...++.+|-|+|||.+.|--+..+..+ +. +|++.++.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---g~-kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---KQ-HAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TC-CEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CC-EEEEEEecc
Confidence 4466788999999999888776665442 46 888887764
No 241
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=67.12 E-value=6.5 Score=36.16 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=24.1
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHH
Q 006790 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 14 y~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
.+|...+|..... .+..|..+.+-+|.|+|||-
T Consensus 5 i~pk~~g~~~~l~----~i~~Ge~~~liG~nGsGKST 37 (208)
T 3b85_A 5 IRPKTLGQKHYVD----AIDTNTIVFGLGPAGSGKTY 37 (208)
T ss_dssp CCCCSHHHHHHHH----HHHHCSEEEEECCTTSSTTH
T ss_pred cccCCHhHHHHHH----hccCCCEEEEECCCCCCHHH
Confidence 3444556665444 45788999999999999965
No 242
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.06 E-value=3 Score=41.79 Aligned_cols=33 Identities=30% Similarity=0.282 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHH-hcC--CcEEEecCCCChhHHHH
Q 006790 20 EQYSYMLELKRAL-DAK--GHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 20 ~Q~~~~~~v~~~l-~~~--~~~~iEapTGtGKTla~ 52 (631)
+|.+.+..+..++ ..+ .++++-+|+|+|||...
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHH
Confidence 5777787887777 554 36999999999998743
No 243
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=66.99 E-value=6.6 Score=35.69 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=29.3
Q ss_pred HHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 28 LKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 28 v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
+..+=.+++.+++-.|+|.|||-+.+--|+..+.. +. ||.|..
T Consensus 21 ~~~~~~~~g~i~v~tG~GkGKTTaA~GlalRA~g~---G~-rV~~vQ 63 (196)
T 1g5t_A 21 VAQAQEERGIIIVFTGNGKGKTTAAFGTAARAVGH---GK-NVGVVQ 63 (196)
T ss_dssp ------CCCCEEEEESSSSCHHHHHHHHHHHHHHT---TC-CEEEEE
T ss_pred hhhccccCceEEEECCCCCCHHHHHHHHHHHHHHC---CC-eEEEEE
Confidence 33333456789999999999999999877766542 45 787773
No 244
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=66.51 E-value=2.8 Score=40.30 Aligned_cols=29 Identities=34% Similarity=0.442 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCcEEEecCCCChhHH-HHHHH
Q 006790 25 MLELKRALDAKGHCLLEMPTGTGKTI-ALLSL 55 (631)
Q Consensus 25 ~~~v~~~l~~~~~~~iEapTGtGKTl-a~L~~ 55 (631)
...+. +..++.+++-+|||+|||- ..++.
T Consensus 17 l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 17 VLELC--HRKMGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp HHHGG--GCSSEEEEEECSTTCSHHHHHHHHH
T ss_pred HHHHh--hCCCCEEEEECCCCccHHHHHHHHH
Confidence 34444 5677889999999999964 44443
No 245
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=66.44 E-value=4.8 Score=37.22 Aligned_cols=21 Identities=33% Similarity=0.268 Sum_probs=16.8
Q ss_pred HHhcCCcEEEecCCCChhHHH
Q 006790 31 ALDAKGHCLLEMPTGTGKTIA 51 (631)
Q Consensus 31 ~l~~~~~~~iEapTGtGKTla 51 (631)
.+..|..+++-+|+|+|||.-
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHH
Confidence 345567899999999999863
No 246
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=65.88 E-value=7.9 Score=37.27 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=18.6
Q ss_pred HhcCCcEEEecCCCChhHHHHHHH
Q 006790 32 LDAKGHCLLEMPTGTGKTIALLSL 55 (631)
Q Consensus 32 l~~~~~~~iEapTGtGKTla~L~~ 55 (631)
+..|...+|-+|+|+|||.-.+.-
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHH
Confidence 455678999999999998755543
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=64.92 E-value=7.4 Score=41.12 Aligned_cols=40 Identities=28% Similarity=0.226 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHHHhc-----------CCcEEEecCCCChhHHHHHHHHHHH
Q 006790 18 YPEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIALLSLITSY 59 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~~-----------~~~~~iEapTGtGKTla~L~~~l~~ 59 (631)
...+++-+..+...+.+ .+.+++.+|+|||||. |+-+++.
T Consensus 36 ~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTt--LaraIa~ 86 (499)
T 2dhr_A 36 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTH--LARAVAG 86 (499)
T ss_dssp CHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHH--HHHHHHH
T ss_pred cHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHH--HHHHHHH
Confidence 34555555566655543 1348999999999998 5545543
No 248
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=64.71 E-value=2.7 Score=38.00 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=17.4
Q ss_pred HHHHhcCCcEEEecCCCChhHH
Q 006790 29 KRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 29 ~~~l~~~~~~~iEapTGtGKTl 50 (631)
...+..+..+++.+|+|+|||-
T Consensus 6 ~~~~~~~~~I~l~G~~GsGKsT 27 (199)
T 2bwj_A 6 MEDLRKCKIIFIIGGPGSGKGT 27 (199)
T ss_dssp HHHHHHSCEEEEEECTTSSHHH
T ss_pred ccccCCCCEEEEECCCCCCHHH
Confidence 3345566789999999999976
No 249
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=64.04 E-value=7.8 Score=36.13 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=24.7
Q ss_pred cEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEE-EEecch
Q 006790 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLI-YCTRTV 77 (631)
Q Consensus 37 ~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi-~~t~T~ 77 (631)
++++-++.|+|||...+.-|...+.. +. +|+ +.+-++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~---G~-~V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ---GV-RVMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT---TC-CEEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC---CC-CEEEEEeCCC
Confidence 58999999999999877655544432 44 554 444443
No 250
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=63.74 E-value=13 Score=47.71 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHH
Q 006790 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLS 54 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~ 54 (631)
-+.+..-+-.+++++..+..+++-+|||+|||.++=+
T Consensus 906 ~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 906 SEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 5677777778888888888899999999999996544
No 251
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=63.20 E-value=2.3 Score=41.82 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCcEEEecCCCChhHH-HHHHHH
Q 006790 24 YMLELKRALDAKGHCLLEMPTGTGKTI-ALLSLI 56 (631)
Q Consensus 24 ~~~~v~~~l~~~~~~~iEapTGtGKTl-a~L~~~ 56 (631)
....|.-.+..|+.+.|-+|+|+|||- .-++..
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 455566666778899999999999964 444443
No 252
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=62.60 E-value=1.8 Score=43.21 Aligned_cols=28 Identities=21% Similarity=0.092 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEecCCCChhHH
Q 006790 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
|+.+.+.+. + +.. ..++|.+|.|+|||-
T Consensus 18 R~~el~~L~---~-l~~-~~v~i~G~~G~GKT~ 45 (357)
T 2fna_A 18 REKEIEKLK---G-LRA-PITLVLGLRRTGKSS 45 (357)
T ss_dssp CHHHHHHHH---H-TCS-SEEEEEESTTSSHHH
T ss_pred hHHHHHHHH---H-hcC-CcEEEECCCCCCHHH
Confidence 555555443 4 444 689999999999998
No 253
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=62.03 E-value=2.5 Score=38.70 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.4
Q ss_pred HHhcCCcEEEecCCCChhHH
Q 006790 31 ALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 31 ~l~~~~~~~iEapTGtGKTl 50 (631)
.+..+..+++.+|+|+|||-
T Consensus 8 ~~~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHH
T ss_pred ccccCCEEEEECCCCCCHHH
Confidence 44567889999999999976
No 254
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=61.63 E-value=9.5 Score=40.83 Aligned_cols=43 Identities=21% Similarity=0.384 Sum_probs=28.0
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecch
Q 006790 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~ 77 (631)
..|++|-+.||+|||.+.-.-.++.+........++++.=+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 4689999999999998655443443333221234777776664
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=61.54 E-value=6.7 Score=39.49 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=28.1
Q ss_pred cCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhh
Q 006790 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHE 79 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l 79 (631)
.+...+|.+|+|+|||.-.+.-+...+.. +. +|+|.+.-++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~-~vlyid~E~s~ 103 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK-TCAFIDAEHAL 103 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CC-eEEEEeCCCCc
Confidence 45678999999999998666554444432 35 66666555443
No 256
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=61.29 E-value=5.5 Score=44.71 Aligned_cols=34 Identities=24% Similarity=0.130 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHhc--CCcEEEecCCCChhHHHH
Q 006790 19 PEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~--~~~~~iEapTGtGKTla~ 52 (631)
-+|.+.+..+.+.+.. +.++++.+|+|||||...
T Consensus 189 iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 189 IGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHH
Confidence 3455666777777765 368999999999999843
No 257
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=61.15 E-value=12 Score=44.33 Aligned_cols=50 Identities=28% Similarity=0.350 Sum_probs=33.2
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhC--------CCCCceEEEEecchhhHHHHHH
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSK--------PENPVKLIYCTRTVHEMEKTLA 85 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~--------~~~~~~vi~~t~T~~l~~Q~~~ 85 (631)
+..+|+|+-|||||...-.-.+...... +...-+|++.|=|++-...+-+
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~ 74 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRG 74 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHH
Confidence 4569999999999986554444443321 1112289999999886665544
No 258
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=60.99 E-value=4.9 Score=41.07 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHH-HHH-hc----CCcEEE--ecCCCChhHHH
Q 006790 18 YPEQYSYMLELK-RAL-DA----KGHCLL--EMPTGTGKTIA 51 (631)
Q Consensus 18 r~~Q~~~~~~v~-~~l-~~----~~~~~i--EapTGtGKTla 51 (631)
|..+.+.+.... +.. .. +.+++| .+|+|+|||..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHH
Confidence 566666555544 433 22 347888 99999999984
No 259
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=60.95 E-value=3.4 Score=36.92 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.5
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.++.+++-+|+|+|||-
T Consensus 4 ~g~~i~i~GpsGsGKST 20 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRH 20 (180)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 35688999999999976
No 260
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=60.50 E-value=4.6 Score=38.99 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=16.3
Q ss_pred cEEEecCCCChhHHHHHHHHHHH
Q 006790 37 HCLLEMPTGTGKTIALLSLITSY 59 (631)
Q Consensus 37 ~~~iEapTGtGKTla~L~~~l~~ 59 (631)
.+++.+|+|||||. |+-+++-
T Consensus 46 GvlL~Gp~GtGKTt--Lakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTL--LAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHH--HHHHHHH
T ss_pred eEEEECCCCCcHHH--HHHHHHH
Confidence 48999999999998 5555543
No 261
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=59.48 E-value=3.4 Score=37.53 Aligned_cols=19 Identities=26% Similarity=0.594 Sum_probs=15.5
Q ss_pred HhcCCcEEEecCCCChhHH
Q 006790 32 LDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 32 l~~~~~~~iEapTGtGKTl 50 (631)
+..|..+.+-+|+|+|||-
T Consensus 4 m~~g~ii~l~Gp~GsGKST 22 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTS 22 (205)
T ss_dssp -CCCCEEEEECCTTSCHHH
T ss_pred CCCCcEEEEECcCCCCHHH
Confidence 3457788999999999976
No 262
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=59.16 E-value=3.7 Score=37.67 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.9
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.+..+++-+|+|+|||-
T Consensus 7 ~g~~i~l~GpsGsGKsT 23 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGT 23 (208)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 46788999999999986
No 263
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=58.93 E-value=24 Score=45.89 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=39.5
Q ss_pred EEEcCeEeeCCCCC----C----ChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHh
Q 006790 3 FKLEDVTVYFPYDN----I----YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL 61 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~----~----r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~ 61 (631)
+.+-+-++.|+||. + .|-=-+-...+..|+..+..+..++|+|||||- ++-.++.+.
T Consensus 564 v~~~~~~f~YgyEYlG~~~rLViTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTe--t~k~La~~l 628 (3245)
T 3vkg_A 564 IHMANATFYYGFEYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTE--TVKALGSQL 628 (3245)
T ss_dssp EEETTEEEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred EEEcCceecCccccCCCCCCCcCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHH--HHHHHHHHh
Confidence 56778888888883 1 344344445566677777778999999999998 444455544
No 264
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=58.93 E-value=7.7 Score=39.02 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=26.0
Q ss_pred ChHHHHHHHHH-----HHHHhcCCc--EEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLEL-----KRALDAKGH--CLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v-----~~~l~~~~~--~~iEapTGtGKTla~L 53 (631)
...|.++-+.+ ..++.+|.+ ++.=+.||+|||....
T Consensus 61 ~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp TCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred CCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 45788776653 345655654 6888999999999775
No 265
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=58.78 E-value=8.2 Score=35.94 Aligned_cols=23 Identities=17% Similarity=0.029 Sum_probs=17.9
Q ss_pred HhcCCcEEEecCCCChhHHHHHH
Q 006790 32 LDAKGHCLLEMPTGTGKTIALLS 54 (631)
Q Consensus 32 l~~~~~~~iEapTGtGKTla~L~ 54 (631)
+..|...++-+|+|+|||.-.+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHH
Confidence 34567899999999999884444
No 266
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=58.65 E-value=9.7 Score=34.53 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=27.2
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 006790 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T 76 (631)
++..++-+|.|+|||--.|-.+-.|.. . ++ +|+|.++.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~-~--~~-kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQI-A--QY-KCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH-T--TC-CEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH-c--CC-eEEEEccc
Confidence 568899999999999666655433333 2 45 88888766
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=58.60 E-value=11 Score=36.91 Aligned_cols=37 Identities=32% Similarity=0.369 Sum_probs=21.7
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
+..+++-+|+|+|||-....-|..++... ++ +|.+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~--G~-~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEK--HK-KIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTT--CC-CEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CC-EEEEEe
Confidence 45778889999999863333222232212 55 666554
No 268
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=58.31 E-value=7.4 Score=38.41 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=17.5
Q ss_pred CCcEEEecCCCChhHHHHHHHHH
Q 006790 35 KGHCLLEMPTGTGKTIALLSLIT 57 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l 57 (631)
+...+|-+|+|+|||.-.+.-+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999985554333
No 269
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=58.26 E-value=4 Score=37.23 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=14.8
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.++.++|-+|+|+|||-
T Consensus 18 ~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSH 34 (197)
T ss_dssp SCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECcCCCCHHH
Confidence 45788999999999987
No 270
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=58.15 E-value=32 Score=39.89 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=24.0
Q ss_pred cCCCCeEEEEEecCcccccccCCCCCceEEEEEcccC
Q 006790 589 DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625 (631)
Q Consensus 589 ~~~~~aILfgv~~Gsf~EGIDf~g~~lr~VII~gLPf 625 (631)
..++--||++| +.+.+|+|.|.- .|+.+-.|.
T Consensus 646 k~g~i~ILIvv--d~lltGfDiP~l---~tlylDkpl 677 (1038)
T 2w00_A 646 KNQDIDLLIVV--GMFLTGFDAPTL---NTLFVDKNL 677 (1038)
T ss_dssp HTTSSSEEEES--STTSSSCCCTTE---EEEEEESCC
T ss_pred HcCCCeEEEEc--chHHhCcCcccc---cEEEEccCC
Confidence 34677899988 899999999975 445555564
No 271
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=57.89 E-value=5 Score=39.50 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=13.2
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..++|-+|||+|||-
T Consensus 4 ~~i~i~GptgsGKt~ 18 (322)
T 3exa_A 4 KLVAIVGPTAVGKTK 18 (322)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCcCCHHH
Confidence 467889999999997
No 272
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=57.85 E-value=6.8 Score=39.45 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=14.9
Q ss_pred hcCCcEEEecCCCChhHH
Q 006790 33 DAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTl 50 (631)
..++.++|-+|||+|||-
T Consensus 121 ~~~g~i~I~GptGSGKTT 138 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKST 138 (356)
T ss_dssp CSSEEEEEECSTTSCHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 445689999999999965
No 273
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=57.79 E-value=4.4 Score=38.55 Aligned_cols=29 Identities=17% Similarity=0.144 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhc---CCcEEEecCCCChhHH
Q 006790 22 YSYMLELKRALDA---KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 22 ~~~~~~v~~~l~~---~~~~~iEapTGtGKTl 50 (631)
......+.-.+.. +..+++-+|.|+|||-
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKST 63 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTT 63 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHH
Confidence 3467777666677 8899999999999976
No 274
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=57.71 E-value=6.2 Score=44.99 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHhcC--CcEEEecCCCChhHHHH
Q 006790 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~--~~~~iEapTGtGKTla~ 52 (631)
-+|.+.+..+.+.+..+ .++++-+|+|||||...
T Consensus 173 iGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 173 IGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHH
T ss_pred CCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHH
Confidence 45667777888888664 47999999999999833
No 275
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=57.48 E-value=4.2 Score=36.97 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=15.3
Q ss_pred HHhcCCcEEEecCCCChhHH
Q 006790 31 ALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 31 ~l~~~~~~~iEapTGtGKTl 50 (631)
.+..+..+++.+|+|+|||-
T Consensus 21 ~~~~~~~i~l~G~~GsGKsT 40 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTT 40 (199)
T ss_dssp ---CCCEEEEECCTTSCHHH
T ss_pred ecCCCCEEEEEcCCCCCHHH
Confidence 44567789999999999987
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=57.43 E-value=4 Score=35.69 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=14.9
Q ss_pred cEEEecCCCChhHHHHHHHHH
Q 006790 37 HCLLEMPTGTGKTIALLSLIT 57 (631)
Q Consensus 37 ~~~iEapTGtGKTla~L~~~l 57 (631)
.+++.+|+|+|||- ++-.|
T Consensus 3 ~I~l~G~~GsGKsT--~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSE--FAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHH--HHHHH
T ss_pred EEEEECCCCCCHHH--HHHHH
Confidence 57899999999987 44444
No 277
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=57.41 E-value=5.2 Score=35.91 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=16.0
Q ss_pred HhcCCcEEEecCCCChhHH
Q 006790 32 LDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 32 l~~~~~~~iEapTGtGKTl 50 (631)
+.++..+++++|+|+|||-
T Consensus 6 m~~~~~I~l~G~~GsGKsT 24 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGT 24 (196)
T ss_dssp HTTSCEEEEEECTTSSHHH
T ss_pred CcCCCEEEEECCCCCCHHH
Confidence 4456789999999999986
No 278
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=57.40 E-value=3.9 Score=37.15 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.5
Q ss_pred HhcCCcEEEecCCCChhHH
Q 006790 32 LDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 32 l~~~~~~~iEapTGtGKTl 50 (631)
+..+..+++.+|+|+|||-
T Consensus 3 i~~g~~i~l~G~~GsGKST 21 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGT 21 (207)
T ss_dssp -CCCCEEEEECSTTSCHHH
T ss_pred CCCCCEEEEECCCCCCHHH
Confidence 3457789999999999976
No 279
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=56.85 E-value=4.3 Score=36.25 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=14.1
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+..+++++|+|+|||-
T Consensus 3 ~~~I~i~G~~GsGKsT 18 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTT 18 (192)
T ss_dssp CCEEEEECCTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578999999999986
No 280
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=56.80 E-value=7.9 Score=38.85 Aligned_cols=42 Identities=12% Similarity=0.049 Sum_probs=27.2
Q ss_pred hcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchh
Q 006790 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~ 78 (631)
..+...+|-+|+|+|||.-.+.-+...+.. +. +++|.+.-++
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~-~vlyi~~E~~ 100 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAA---GG-IAAFIDAEHA 100 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CC-eEEEEECCCC
Confidence 356789999999999988655544444432 34 5666554443
No 281
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=56.56 E-value=5.4 Score=39.69 Aligned_cols=15 Identities=40% Similarity=0.370 Sum_probs=13.6
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..++|-+|||+|||-
T Consensus 41 ~lIvI~GPTgsGKTt 55 (339)
T 3a8t_A 41 KLLVLMGATGTGKSR 55 (339)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 478999999999987
No 282
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=56.54 E-value=6.9 Score=39.73 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.3
Q ss_pred HHhcCCcEEEecCCCChhHH
Q 006790 31 ALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 31 ~l~~~~~~~iEapTGtGKTl 50 (631)
.+..+..+++.+|+|+|||.
T Consensus 165 ~i~~~~~i~l~G~~GsGKST 184 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTT 184 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHH
T ss_pred ccCCCCEEEEECCCCCCHHH
Confidence 34556789999999999976
No 283
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=55.76 E-value=3.4 Score=37.83 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=12.4
Q ss_pred CCcEEEEeCCcchH
Q 006790 227 KESVVVFDEAHNID 240 (631)
Q Consensus 227 ~~~~~IiDEAHnl~ 240 (631)
...+|||||||++.
T Consensus 87 ~~~vliIDEAq~l~ 100 (199)
T 2r2a_A 87 IGSIVIVDEAQDVW 100 (199)
T ss_dssp TTCEEEETTGGGTS
T ss_pred CceEEEEEChhhhc
Confidence 48899999999983
No 284
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=55.44 E-value=17 Score=36.97 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=15.9
Q ss_pred hcCCcEEEecCCCChhHHHH
Q 006790 33 DAKGHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTla~ 52 (631)
....++++.+++|||||+.+
T Consensus 158 ~~~~~vli~Ge~GtGK~~lA 177 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVA 177 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEecCCCcCHHHHH
Confidence 33467999999999999733
No 285
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=55.41 E-value=5.8 Score=37.42 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=13.6
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
...+++.+|+|+|||-
T Consensus 29 ~~~I~l~G~~GsGKsT 44 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGT 44 (243)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 3468999999999976
No 286
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=55.06 E-value=11 Score=38.35 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=31.2
Q ss_pred EEEcCeEeeCCCCCCChH-----HHHHHHHHHHHH---hcCCcEEEecCCCChhHHH
Q 006790 3 FKLEDVTVYFPYDNIYPE-----QYSYMLELKRAL---DAKGHCLLEMPTGTGKTIA 51 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~-----Q~~~~~~v~~~l---~~~~~~~iEapTGtGKTla 51 (631)
+.+++++..||-+..+.. -.+.--.+.+.+ ..|+.+.|-+|+|+|||.-
T Consensus 134 i~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtL 190 (422)
T 3ice_A 134 ILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTML 190 (422)
T ss_dssp CCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHH
T ss_pred ceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHH
Confidence 345777888887643333 222333334433 4477899999999999873
No 287
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=55.05 E-value=15 Score=36.09 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=29.7
Q ss_pred cEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhH
Q 006790 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEM 80 (631)
Q Consensus 37 ~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~ 80 (631)
..+|-+|+|+|||.-.|-.+...++..+ +. +++|.+.-++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~-g~-~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYP-DA-VCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCT-TC-EEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCC-Cc-eEEEEeccchhh
Confidence 5788899999999877766555554321 45 788877766654
No 288
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=54.98 E-value=12 Score=37.42 Aligned_cols=43 Identities=19% Similarity=0.047 Sum_probs=25.4
Q ss_pred cCCcEEEecCCCChhHHHHHHHHHHHHhhCC---CCCceEEEEecch
Q 006790 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKP---ENPVKLIYCTRTV 77 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L~~~l~~~~~~~---~~~~~vi~~t~T~ 77 (631)
.|...+|-+|+|+|||.-.+.-+...+.... .+. +++|.+-..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~-~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGG-KIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCC-EEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCC-eEEEEECCC
Confidence 3457899999999999855543333222100 135 666665544
No 289
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=54.58 E-value=3.8 Score=37.17 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.7
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.+..+++++|.|+|||-
T Consensus 3 ~~~~I~l~G~~GsGKsT 19 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTT 19 (204)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 45678999999999977
No 290
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=54.52 E-value=14 Score=37.16 Aligned_cols=42 Identities=12% Similarity=-0.064 Sum_probs=27.2
Q ss_pred cCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhh
Q 006790 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHE 79 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l 79 (631)
.+...+|-+|+|+|||.-.+.-+...+. . +. +|+|.+.-.+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~-~--gg-~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK-M--GG-VAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH-T--TC-CEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-c--CC-eEEEEeccccc
Confidence 3567899999999999855554443333 2 45 67666555443
No 291
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=54.41 E-value=7.9 Score=33.34 Aligned_cols=25 Identities=28% Similarity=0.178 Sum_probs=20.0
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhh
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLS 62 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~ 62 (631)
+..+|-+|+|+|||- |+-|+.|+..
T Consensus 24 g~~~I~G~NGsGKSt--il~Ai~~~l~ 48 (149)
T 1f2t_A 24 GINLIIGQNGSGKSS--LLDAILVGLY 48 (149)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHHc
Confidence 467889999999998 6667777664
No 292
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=54.40 E-value=28 Score=31.13 Aligned_cols=71 Identities=6% Similarity=0.023 Sum_probs=46.7
Q ss_pred eeCCCCCCChHHHHHHHHHHHHHh-cCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHH
Q 006790 10 VYFPYDNIYPEQYSYMLELKRALD-AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84 (631)
Q Consensus 10 ~~Fpy~~~r~~Q~~~~~~v~~~l~-~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~ 84 (631)
+.||-.+ -|-+.-...++...+. .....+|.++-|++|+-..+...+..+... |+ +|.+.++|..-...+.
T Consensus 26 ~~~~~~~-~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~--Gr-~V~vLAp~~~s~~~l~ 97 (189)
T 2l8b_A 26 TVHPEKS-VPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ--GR-EVQIIAADRRSQMNMK 97 (189)
T ss_dssp CCCGGGC-CCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT--TC-CEEEECSTTHHHHHHS
T ss_pred ccCCcCc-cccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc--Ce-EEEEEcCchHHHHHHH
Confidence 4566543 2333333334443333 346889999999999998666555556655 67 9999999988666553
No 293
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=54.33 E-value=10 Score=38.35 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=26.6
Q ss_pred cCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchh
Q 006790 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~ 78 (631)
.+...+|-+|+|+|||.-.+.-+...+.. +. +|+|.+.-.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~-~vlyi~~E~s 113 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GG-TCAFIDAEHA 113 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CC-eEEEEECCCC
Confidence 45678899999999998665544444432 34 5666654443
No 294
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=53.90 E-value=5.1 Score=35.04 Aligned_cols=14 Identities=29% Similarity=0.190 Sum_probs=12.5
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.+++.+|.|+|||-
T Consensus 3 ~i~l~G~~GsGKsT 16 (173)
T 3kb2_A 3 LIILEGPDCCFKST 16 (173)
T ss_dssp EEEEECSSSSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999976
No 295
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=53.85 E-value=5.3 Score=35.59 Aligned_cols=16 Identities=31% Similarity=0.200 Sum_probs=14.0
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
..++++.+|+|+|||-
T Consensus 5 ~~~i~l~G~~GsGKst 20 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTS 20 (185)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 4578999999999986
No 296
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=53.68 E-value=6 Score=44.71 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=17.0
Q ss_pred CCcEEEecCCCChhHHHHHHHHHH
Q 006790 35 KGHCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l~ 58 (631)
+..+++.+|+|||||. |+-+++
T Consensus 238 ~~~vLL~Gp~GtGKTt--Larala 259 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTL--IARAVA 259 (806)
T ss_dssp CCEEEECSCTTSSHHH--HHHHHH
T ss_pred CCeEEEECcCCCCHHH--HHHHHH
Confidence 4679999999999997 444443
No 297
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=53.00 E-value=5.5 Score=36.21 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=13.5
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.++.+++-+|+|+|||-
T Consensus 3 ~g~~i~lvGpsGaGKST 19 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKST 19 (198)
T ss_dssp --CCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46788999999999965
No 298
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=53.00 E-value=8.8 Score=33.94 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=14.8
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.+.++++.+|+|+|||-
T Consensus 10 ~~~~i~i~G~~GsGKst 26 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTT 26 (180)
T ss_dssp CCCCEEEECSTTSSHHH
T ss_pred cCCeEEEEeCCCCCHHH
Confidence 35679999999999987
No 299
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=52.89 E-value=8.1 Score=36.14 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=18.1
Q ss_pred HHhcCCcEEEecCCCChhHHHH
Q 006790 31 ALDAKGHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 31 ~l~~~~~~~iEapTGtGKTla~ 52 (631)
.+..|..+.+-+|+|+|||--.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHH
Confidence 5567889999999999997733
No 300
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=52.89 E-value=5 Score=37.27 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=14.3
Q ss_pred hcCCcEEEecCCCChhHH
Q 006790 33 DAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTl 50 (631)
.+...+++++|+|+|||-
T Consensus 5 ~~~~~I~l~G~~GsGKsT 22 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGT 22 (227)
T ss_dssp --CCEEEEEECTTSSHHH
T ss_pred ccCcEEEEECCCCCCHHH
Confidence 345679999999999987
No 301
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=52.70 E-value=4.2 Score=36.29 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.3
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.+..+++++|+|+|||-
T Consensus 3 ~g~~I~l~G~~GsGKST 19 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGT 19 (186)
T ss_dssp CEEEEEEECCTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 34578999999999976
No 302
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=52.58 E-value=5.1 Score=37.05 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=14.3
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
....+++++|+|+|||-
T Consensus 4 ~~~~I~l~G~~GsGKsT 20 (222)
T 1zak_A 4 DPLKVMISGAPASGKGT 20 (222)
T ss_dssp CSCCEEEEESTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 34578999999999976
No 303
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=52.03 E-value=6.3 Score=35.96 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.9
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..++|-+|||+|||-
T Consensus 35 ~~ilI~GpsGsGKSt 49 (205)
T 2qmh_A 35 LGVLITGDSGVGKSE 49 (205)
T ss_dssp EEEEEECCCTTTTHH
T ss_pred EEEEEECCCCCCHHH
Confidence 457899999999975
No 304
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=51.66 E-value=8 Score=37.97 Aligned_cols=14 Identities=43% Similarity=0.529 Sum_probs=12.7
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.++|-+|||+|||-
T Consensus 12 ~i~i~GptgsGKt~ 25 (316)
T 3foz_A 12 AIFLMGPTASGKTA 25 (316)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 57889999999997
No 305
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=51.58 E-value=6.1 Score=35.66 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=13.4
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
+.++|-||+|+|||-
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 468999999999987
No 306
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=51.47 E-value=12 Score=44.26 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=27.5
Q ss_pred EEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchh
Q 006790 38 CLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (631)
Q Consensus 38 ~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~ 78 (631)
-+|-|+.|||||...+--+.......+.+. +|++.+|++.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~-~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGK-PIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSS-CEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCC-cEEEEecCcc
Confidence 478899999999987765433333444346 8999965543
No 307
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=50.63 E-value=7.8 Score=43.49 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=16.8
Q ss_pred CcEEEecCCCChhHHHHHHHHHH
Q 006790 36 GHCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~ 58 (631)
+.+++.+|+|||||+ |+-+++
T Consensus 239 ~GILL~GPPGTGKT~--LAraiA 259 (806)
T 3cf2_A 239 RGILLYGPPGTGKTL--IARAVA 259 (806)
T ss_dssp CEEEEECCTTSCHHH--HHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHH
Confidence 458999999999998 555554
No 308
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=50.61 E-value=29 Score=31.83 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=14.5
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.+..+++|+|.|+|||-
T Consensus 5 ~g~~i~~eG~~gsGKsT 21 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKST 21 (213)
T ss_dssp CCEEEEEECSTTSSHHH
T ss_pred CceEEEEEcCCCCCHHH
Confidence 35678999999999965
No 309
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=50.55 E-value=15 Score=37.41 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=26.3
Q ss_pred cCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchh
Q 006790 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~ 78 (631)
.+.|.+|-+|||+|||...-.-+... .. .+. +|++.-+..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~--~~~-~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YM--QGS-RVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HT--TTC-CEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HH--CCC-EEEEEeCCcC
Confidence 45789999999999997433322222 22 245 7888766644
No 310
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=49.93 E-value=8.1 Score=39.16 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=15.6
Q ss_pred HhcCCcEEEecCCCChhHH
Q 006790 32 LDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 32 l~~~~~~~iEapTGtGKTl 50 (631)
+..++.+++-+|||+|||-
T Consensus 133 ~~~g~~i~ivG~~GsGKTT 151 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKST 151 (372)
T ss_dssp TSSSEEEEEECSSSSSHHH
T ss_pred hcCCCEEEEECCCCCCHHH
Confidence 3456789999999999965
No 311
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=49.55 E-value=27 Score=36.09 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=21.8
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceE-EEEecc
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL-IYCTRT 76 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~v-i~~t~T 76 (631)
..+++-+|+|+|||-...- |+...... ++ +| ++++-|
T Consensus 101 ~vIlivG~~G~GKTTt~~k--LA~~l~~~-G~-kVllv~~D~ 138 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAK--LARYFQKR-GY-KVGVVCSDT 138 (443)
T ss_dssp EEEEEECCTTSSHHHHHHH--HHHHHHTT-TC-CEEEEECCC
T ss_pred eEEEEECcCCCCHHHHHHH--HHHHHHHC-CC-eEEEEeCCC
Confidence 3678889999999884433 33322322 45 55 455443
No 312
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=49.25 E-value=35 Score=33.60 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcCC------cEEEecCCCChhHH
Q 006790 21 QYSYMLELKRALDAKG------HCLLEMPTGTGKTI 50 (631)
Q Consensus 21 Q~~~~~~v~~~l~~~~------~~~iEapTGtGKTl 50 (631)
..+....+...+.++. .+.|-+|+|+|||-
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKST 107 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKST 107 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHH
Confidence 3444555666665543 57888999999976
No 313
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=49.24 E-value=7.1 Score=36.08 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=15.4
Q ss_pred HHHHHHhcCCcEEEecCCCChhHH
Q 006790 27 ELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 27 ~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
.|--.+..|+.+.|-+|+|+|||-
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp -------CCCCEEEECSTTSSHHH
T ss_pred CCceecCCCCEEEEECCCCCCHHH
Confidence 444456678899999999999975
No 314
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=49.15 E-value=6.3 Score=34.71 Aligned_cols=14 Identities=29% Similarity=0.216 Sum_probs=12.6
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.+++.+|+|+|||-
T Consensus 4 ~I~i~G~~GsGKST 17 (181)
T 1ly1_A 4 IILTIGCPGSGKST 17 (181)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEecCCCCCHHH
Confidence 57899999999976
No 315
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=49.02 E-value=12 Score=35.17 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.7
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.+..+++|+|.|+|||-
T Consensus 26 ~~~~i~~eG~~GsGKsT 42 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKST 42 (236)
T ss_dssp CCCEEEEEESTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 35789999999999976
No 316
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=48.79 E-value=17 Score=33.45 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=28.7
Q ss_pred hcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecch
Q 006790 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~ 77 (631)
..|..-++-+|-|+|||.++|--+..+..+ +. ++++.++.+
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~---g~-kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYA---KQ-KVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT---TC-CEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHc---CC-ceEEEEecc
Confidence 456778889999999998777665444432 45 788887764
No 317
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=48.65 E-value=9.8 Score=37.57 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=15.5
Q ss_pred cCCcEEEecCCCChhHHHHH
Q 006790 34 AKGHCLLEMPTGTGKTIALL 53 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L 53 (631)
.+...++.+|+|+|||.-.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 34567999999999998333
No 318
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=48.57 E-value=13 Score=37.19 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHHHhc---CC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLELKRALDA---KG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~~---~~--~~~iEapTGtGKTla~L 53 (631)
-..|.++-+.|...+.. |- .++.=+.||+|||...+
T Consensus 63 ~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 63 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp TCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 46788887777654432 33 47778999999999775
No 319
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=48.37 E-value=6 Score=35.96 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.8
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+..+++++|.|+|||-
T Consensus 4 ~~~I~i~G~~GsGKsT 19 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSS 19 (213)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CeEEEEEcCCCCCHHH
Confidence 4578999999999976
No 320
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=48.28 E-value=8.7 Score=38.85 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=21.4
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhC
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSK 63 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~ 63 (631)
+.-+|-+|||+|||. |+=||.|+...
T Consensus 26 gl~vi~G~NGaGKT~--ileAI~~~l~g 51 (371)
T 3auy_A 26 GIVAIIGENGSGKSS--IFEAVFFALFG 51 (371)
T ss_dssp EEEEEEECTTSSHHH--HHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHHcC
Confidence 467899999999999 77788886643
No 321
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=48.11 E-value=6.6 Score=35.44 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=12.3
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.+++++++|+|||-
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 47899999999976
No 322
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=48.10 E-value=9.7 Score=40.79 Aligned_cols=16 Identities=38% Similarity=0.364 Sum_probs=14.5
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+.++++-+|+|||||.
T Consensus 108 g~~vll~Gp~GtGKTt 123 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTS 123 (543)
T ss_dssp SCEEEEESSSSSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 5689999999999997
No 323
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=47.99 E-value=8.3 Score=43.26 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=17.2
Q ss_pred CcEEEecCCCChhHHHHHHHHHHH
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSY 59 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~ 59 (631)
+.+++-+|+|||||+ |.-|++.
T Consensus 512 ~gvLl~GPPGtGKT~--lAkaiA~ 533 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTL--LAKAIAN 533 (806)
T ss_dssp SCCEEESSTTSSHHH--HHHHHHH
T ss_pred ceEEEecCCCCCchH--HHHHHHH
Confidence 358999999999997 6555554
No 324
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=47.89 E-value=11 Score=33.21 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=19.7
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHh
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVL 61 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~ 61 (631)
+..+|-+|+|+|||- |+-||.++.
T Consensus 27 g~~~i~G~NGsGKSt--ll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSN--IGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHH--HHHHHHHHT
T ss_pred CcEEEECCCCCCHHH--HHHHHHHHH
Confidence 367899999999998 666777765
No 325
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=47.68 E-value=6.3 Score=35.16 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=12.4
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.+++++|.|+|||-
T Consensus 3 ~I~i~G~~GsGKsT 16 (194)
T 1nks_A 3 IGIVTGIPGVGKST 16 (194)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999976
No 326
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=47.64 E-value=7.9 Score=35.43 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=15.5
Q ss_pred HhcCCcEEEecCCCChhHH
Q 006790 32 LDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 32 l~~~~~~~iEapTGtGKTl 50 (631)
+..+..+++++++|+|||-
T Consensus 22 ~~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKST 40 (211)
T ss_dssp TSSCEEEEEECSTTSSHHH
T ss_pred CCCCCEEEEECCCCCCHHH
Confidence 3456688999999999965
No 327
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=47.13 E-value=8.1 Score=33.80 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=14.0
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+..+++-+|.|+|||-
T Consensus 4 ~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 4678999999999976
No 328
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=47.02 E-value=6.7 Score=35.77 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.2
Q ss_pred hcCCcEEEecCCCChhHH
Q 006790 33 DAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTl 50 (631)
.++..+++++|.|+|||-
T Consensus 7 ~~~~~I~l~G~~GsGKsT 24 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKST 24 (215)
T ss_dssp CCCCEEEEEESTTSSHHH
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 346789999999999976
No 329
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=46.87 E-value=6.2 Score=35.29 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.9
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+..++++++.|+|||-
T Consensus 5 ~~~I~l~G~~GsGKST 20 (193)
T 2rhm_A 5 PALIIVTGHPATGKTT 20 (193)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578999999999977
No 330
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=46.85 E-value=7.3 Score=35.44 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=14.6
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.+..++++++.|+|||-
T Consensus 9 ~~~~I~l~G~~GsGKST 25 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKST 25 (212)
T ss_dssp CSCEEEEEESTTSSHHH
T ss_pred cCCEEEEEcCCCCCHHH
Confidence 45679999999999976
No 331
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.42 E-value=17 Score=47.03 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHH
Q 006790 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLS 54 (631)
Q Consensus 13 py~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~ 54 (631)
++.+ -|.|..=+-++++.+.-+.-+++-+|||+|||-++=+
T Consensus 885 ~L~~-~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 885 HLVT-KQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp TCCC-CHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred CCcc-CHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 3443 5777777778888887777789999999999998765
No 332
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=46.31 E-value=13 Score=46.12 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=27.7
Q ss_pred cCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchh
Q 006790 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~ 78 (631)
.+.++++-+|+|||||.-.+.-+...+ .+ +. +++|.+..++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~-~~--G~-~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ-RE--GK-TCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-TT--TC-CEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CC-cEEEEEcccc
Confidence 567899999999999995554333322 22 45 7777766554
No 333
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=46.25 E-value=16 Score=37.79 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=21.1
Q ss_pred cEEEecCCCChhHHHHHHHHHHHHhhCCCCCceE-EEEecc
Q 006790 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL-IYCTRT 76 (631)
Q Consensus 37 ~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~v-i~~t~T 76 (631)
.+++-+|+|+|||-....-|..++. . ++ +| ++++.|
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~-~--G~-kVllv~~D~ 135 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKK-R--GY-KVGLVAADV 135 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH-T--TC-CEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-c--CC-eEEEEecCc
Confidence 5778899999998743332323322 2 45 56 445444
No 334
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=46.18 E-value=32 Score=31.52 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=14.2
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
|..+++|++.|+|||-
T Consensus 3 g~~i~~eG~~gsGKsT 18 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTT 18 (213)
T ss_dssp CCEEEEEECTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 6688999999999975
No 335
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=46.04 E-value=12 Score=34.05 Aligned_cols=26 Identities=27% Similarity=0.127 Sum_probs=21.2
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhC
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSK 63 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~ 63 (631)
+..+|-+|+|+|||- |+-||.|+...
T Consensus 24 ~~~~I~G~NgsGKSt--il~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSS--LLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHH--HHHHHHHHhcC
Confidence 467888999999998 66778888754
No 336
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=46.03 E-value=8.1 Score=35.56 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.7
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+..+++++|+|+|||-
T Consensus 4 ~~~I~l~G~~GsGKsT 19 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGT 19 (220)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 3578999999999976
No 337
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=45.96 E-value=6.6 Score=36.72 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=12.5
Q ss_pred hcCCcEEEecCCCChhHH
Q 006790 33 DAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTl 50 (631)
..|..+++|+|.|+|||-
T Consensus 23 ~~g~~I~~eG~~GsGKsT 40 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTT 40 (227)
T ss_dssp CCCCEEEEECCC---CHH
T ss_pred cCCeEEEEECCCCCCHHH
Confidence 457789999999999965
No 338
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=45.80 E-value=7 Score=34.91 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=13.5
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+..+++++++|+|||-
T Consensus 3 ~~~I~l~G~~GsGKsT 18 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGT 18 (196)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 3468999999999976
No 339
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=45.65 E-value=8.4 Score=33.88 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.8
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+..+++-+|+|+|||-
T Consensus 3 ~~~i~l~G~~GsGKST 18 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSG 18 (178)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 3578999999999987
No 340
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=45.65 E-value=30 Score=32.11 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.6
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.+..+++|+|.|+|||-
T Consensus 25 ~g~~i~i~G~~GsGKsT 41 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTT 41 (229)
T ss_dssp CCEEEEEECCTTSCHHH
T ss_pred CCeEEEEEcCCCCCHHH
Confidence 35689999999999976
No 341
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=45.53 E-value=7.9 Score=34.70 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=12.1
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.+++++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (197)
T 2z0h_A 2 FITFEGIDGSGKST 15 (197)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46899999999965
No 342
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=45.40 E-value=6 Score=36.17 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=21.3
Q ss_pred HHHHHHHHHHh----cCCcEEEecCCCChhHH-HHHHH
Q 006790 23 SYMLELKRALD----AKGHCLLEMPTGTGKTI-ALLSL 55 (631)
Q Consensus 23 ~~~~~v~~~l~----~~~~~~iEapTGtGKTl-a~L~~ 55 (631)
+++..+.+.+. .+..+.|-+|+|+|||- +-++.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 35555555543 34578899999999964 44443
No 343
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=45.05 E-value=15 Score=37.12 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHHHhc---C--CcEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLELKRALDA---K--GHCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~~---~--~~~~iEapTGtGKTla~L 53 (631)
...|.++-+.|...++. | ..++.=+.||+|||....
T Consensus 94 ~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 94 GSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp TCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred cccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 56788888777654432 4 357778999999999665
No 344
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=44.59 E-value=8.8 Score=35.56 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=15.6
Q ss_pred HHhcCCcEEEecCCCChhHH
Q 006790 31 ALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 31 ~l~~~~~~~iEapTGtGKTl 50 (631)
.+..|..++|-+|.|+|||-
T Consensus 12 ~~~~G~ii~l~GpsGsGKST 31 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSS 31 (219)
T ss_dssp ---CCCEEEEECCTTSCHHH
T ss_pred cCCCCcEEEEECCCCCCHHH
Confidence 45678899999999999987
No 345
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=44.49 E-value=15 Score=36.82 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHHHhc---CC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLELKRALDA---KG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~~---~~--~~~iEapTGtGKTla~L 53 (631)
-..|.++-+.|...+.. |- .++.=+.||+|||....
T Consensus 64 ~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 64 SHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp TCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 56788877776654433 43 46778999999999875
No 346
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=44.48 E-value=9.5 Score=34.08 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=13.0
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
+.+.+-+|+|+|||-
T Consensus 2 ~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEESSSSSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 567889999999976
No 347
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=44.46 E-value=8.3 Score=35.68 Aligned_cols=17 Identities=35% Similarity=0.237 Sum_probs=15.0
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
+|..+++|+|.|+|||-
T Consensus 4 ~g~~i~~eG~~g~GKst 20 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTT 20 (216)
T ss_dssp CCCEEEEEECSSSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 46789999999999976
No 348
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=44.38 E-value=23 Score=33.05 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=29.1
Q ss_pred cCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecch
Q 006790 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~ 77 (631)
.+...++-+|-|+|||-+.|--+..+.. .+. +|++.++.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~---~g~-kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI---AQY-KCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT---TTC-CEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH---CCC-eEEEEeecC
Confidence 3567788888899999988876655543 246 888887664
No 349
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=44.20 E-value=5.5 Score=35.66 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=16.0
Q ss_pred HhcCCcEEEecCCCChhHH
Q 006790 32 LDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 32 l~~~~~~~iEapTGtGKTl 50 (631)
+..|..+++-+|.|+|||-
T Consensus 6 i~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CCTTEEEEEEECTTSCHHH
T ss_pred CCCCeEEEEECCCCCCHHH
Confidence 4567789999999999976
No 350
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.15 E-value=15 Score=37.47 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHHHH---hcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLELKRAL---DAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l---~~~~--~~~iEapTGtGKTla~L 53 (631)
-..|.++-+.|...+ -+|- .++.=+.||+|||...+
T Consensus 119 ~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 119 QDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 456777666554433 2343 46778999999999875
No 351
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=43.77 E-value=5.6 Score=35.13 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.3
Q ss_pred hcCCcEEEecCCCChhHH
Q 006790 33 DAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTl 50 (631)
..|..+.+-+|.|+|||-
T Consensus 7 ~~gei~~l~G~nGsGKST 24 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKST 24 (171)
T ss_dssp ESSEEEEEECCTTSCHHH
T ss_pred CCCEEEEEECCCCCCHHH
Confidence 356788999999999987
No 352
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=43.65 E-value=9.4 Score=34.56 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=14.8
Q ss_pred hcCCcEEEecCCCChhHH
Q 006790 33 DAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTl 50 (631)
..+..+++.+|.|+|||-
T Consensus 27 ~~g~~i~l~G~~GsGKST 44 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTT 44 (200)
T ss_dssp -CCCEEEEECCTTSCHHH
T ss_pred CCCcEEEEECCCCCCHHH
Confidence 346789999999999976
No 353
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=43.58 E-value=9.7 Score=33.95 Aligned_cols=16 Identities=38% Similarity=0.366 Sum_probs=14.2
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+.++++-+|+|+|||-
T Consensus 10 ~~~I~l~G~~GsGKST 25 (184)
T 1y63_A 10 GINILITGTPGTGKTS 25 (184)
T ss_dssp SCEEEEECSTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 4679999999999987
No 354
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=43.52 E-value=9.2 Score=33.33 Aligned_cols=15 Identities=33% Similarity=0.363 Sum_probs=13.5
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
.++++.++.|+|||-
T Consensus 8 ~~i~l~G~~GsGKST 22 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSS 22 (168)
T ss_dssp CEEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 578999999999976
No 355
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=43.30 E-value=15 Score=33.27 Aligned_cols=27 Identities=19% Similarity=0.031 Sum_probs=18.9
Q ss_pred HHHHHHHHHhc-----CCcEEEecCCCChhHH
Q 006790 24 YMLELKRALDA-----KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 24 ~~~~v~~~l~~-----~~~~~iEapTGtGKTl 50 (631)
.+..+.+.+.. +..+.|-+|+|+|||-
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKst 37 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTT 37 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHH
Confidence 44555555543 3468899999999976
No 356
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=43.00 E-value=9.7 Score=34.39 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=13.2
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..+++++|+|+|||-
T Consensus 21 ~~I~l~G~~GsGKST 35 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGT 35 (201)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 368999999999987
No 357
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=42.97 E-value=8.7 Score=35.71 Aligned_cols=19 Identities=32% Similarity=0.386 Sum_probs=11.9
Q ss_pred HhcCCcEEEecCCCChhHH
Q 006790 32 LDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 32 l~~~~~~~iEapTGtGKTl 50 (631)
+..|..+.+-+|+|+|||-
T Consensus 24 v~~G~ii~l~Gp~GsGKST 42 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTT 42 (231)
T ss_dssp EECCCEEEEECSCC----C
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3456788999999999976
No 358
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=42.79 E-value=13 Score=32.34 Aligned_cols=37 Identities=19% Similarity=0.040 Sum_probs=23.7
Q ss_pred hcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
..|..+.+-+|.|+|||- |+-+++-.. +... .|.+-+
T Consensus 31 ~~Ge~v~L~G~nGaGKTT--Llr~l~g~l--~~~G-~V~~~g 67 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT--LTRGMLQGI--GHQG-NVKSPT 67 (158)
T ss_dssp SSCEEEEEECSTTSSHHH--HHHHHHHHT--TCCS-CCCCCT
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHHhC--CCCC-eEEECC
Confidence 567788999999999986 444444333 3334 454433
No 359
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=42.77 E-value=26 Score=34.59 Aligned_cols=36 Identities=14% Similarity=-0.013 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHH----HHHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
...|.++-+.+. +.+-+|- .++.=+.||+|||....
T Consensus 55 ~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 567887766543 3333453 47778999999999765
No 360
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=42.57 E-value=9.9 Score=35.42 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=13.4
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..+++++|+|+|||-
T Consensus 17 ~~I~l~G~~GsGKsT 31 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGT 31 (233)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 578999999999976
No 361
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=42.31 E-value=28 Score=34.02 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=22.3
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEec
Q 006790 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~ 75 (631)
+..+.+-+|+|+|||- |+..++.... ++++ +|.+...
T Consensus 102 g~vi~lvG~nGsGKTT--ll~~Lagll~-~~~g-~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTT--TIAKLGRYYQ-NLGK-KVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHH--HHHHHHHHHH-TTTC-CEEEECC
T ss_pred CeEEEEECCCCCcHHH--HHHHHHHHHH-hcCC-EEEEEee
Confidence 4577788999999976 3333332222 2345 6766654
No 362
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=42.24 E-value=48 Score=32.99 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHhc--C--CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 19 PEQYSYMLELKRALDA--K--GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 19 ~~Q~~~~~~v~~~l~~--~--~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
+...+.+..+.+.+.. + ..+++-+++|+|||- |+-.++...... ++ +|.+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKST--l~~~L~~~l~~~-g~-kV~vi~ 114 (355)
T 3p32_A 59 PDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKST--AIEALGMHLIER-GH-RVAVLA 114 (355)
T ss_dssp HHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSSHHH--HHHHHHHHHHTT-TC-CEEEEE
T ss_pred hhhHHHHHHHHHHhHhhcCCceEEEEECCCCCCHHH--HHHHHHHHHHhC-CC-ceEEEe
Confidence 4444556666666642 2 257888999999987 443444333322 45 555543
No 363
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=42.09 E-value=8.8 Score=33.95 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=14.1
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.+..++++++.|+|||-
T Consensus 4 ~g~~i~l~G~~GsGKST 20 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTT 20 (179)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 35578899999999975
No 364
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=42.06 E-value=14 Score=35.08 Aligned_cols=14 Identities=43% Similarity=0.370 Sum_probs=12.2
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.++|-+|||+|||-
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 46889999999976
No 365
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=42.05 E-value=8.6 Score=35.79 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=13.8
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
|..+.+++|.|+|||-
T Consensus 20 g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CEEEEEECSTTSCHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4578999999999986
No 366
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=42.05 E-value=11 Score=38.35 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=12.5
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.++|-+|||+|||-
T Consensus 4 ~i~i~GptgsGKtt 17 (409)
T 3eph_A 4 VIVIAGTTGVGKSQ 17 (409)
T ss_dssp EEEEEECSSSSHHH
T ss_pred EEEEECcchhhHHH
Confidence 57889999999997
No 367
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=41.91 E-value=13 Score=36.60 Aligned_cols=14 Identities=43% Similarity=0.437 Sum_probs=12.8
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.++|-+|||+|||-
T Consensus 7 ~i~i~GptGsGKTt 20 (323)
T 3crm_A 7 AIFLMGPTAAGKTD 20 (323)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 68899999999987
No 368
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=41.69 E-value=9.6 Score=34.86 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=12.1
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.+++.+|+|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (216)
T 3fb4_A 2 NIVLMGLPGAGKGT 15 (216)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36889999999976
No 369
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=41.65 E-value=8.9 Score=34.14 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=13.7
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+..++++++.|+|||-
T Consensus 13 ~~~i~l~G~~GsGKsT 28 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTT 28 (186)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CcEEEEEcCCCCCHHH
Confidence 4578999999999976
No 370
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=41.57 E-value=9.7 Score=33.93 Aligned_cols=14 Identities=36% Similarity=0.361 Sum_probs=12.2
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.++++++.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (195)
T 2pbr_A 2 LIAFEGIDGSGKTT 15 (195)
T ss_dssp EEEEECSTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999976
No 371
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=41.40 E-value=27 Score=37.02 Aligned_cols=50 Identities=18% Similarity=0.099 Sum_probs=29.0
Q ss_pred HHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHH
Q 006790 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (631)
Q Consensus 31 ~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~ 85 (631)
.+..|...+|-+|+|+|||--... ++..... .+. +++|.+.... ..|+..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~--l~g~~~~-~G~-~vi~~~~ee~-~~~l~~ 326 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSR--FVENACA-NKE-RAILFAYEES-RAQLLR 326 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHH--HHHHHHT-TTC-CEEEEESSSC-HHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHH--HHHHHHh-CCC-CEEEEEEeCC-HHHHHH
Confidence 345567899999999999873333 3322222 255 6766554333 235443
No 372
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=41.37 E-value=11 Score=34.85 Aligned_cols=22 Identities=18% Similarity=0.043 Sum_probs=16.1
Q ss_pred hcCCcEEEecCCCChh-HHHHHH
Q 006790 33 DAKGHCLLEMPTGTGK-TIALLS 54 (631)
Q Consensus 33 ~~~~~~~iEapTGtGK-Tla~L~ 54 (631)
.+.+++++-+|+|+|| |.|-++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 3445788899999999 555554
No 373
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=41.37 E-value=9.8 Score=34.38 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=13.1
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..+++++|+|+|||-
T Consensus 16 ~~I~l~G~~GsGKsT 30 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGT 30 (203)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 368999999999986
No 374
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=41.35 E-value=28 Score=34.66 Aligned_cols=48 Identities=21% Similarity=0.106 Sum_probs=28.9
Q ss_pred EcCeEeeCCCC-CCChHHHHHHHHH----HHHHhcCC--cEEEecCCCChhHHHH
Q 006790 5 LEDVTVYFPYD-NIYPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIAL 52 (631)
Q Consensus 5 i~~~~~~Fpy~-~~r~~Q~~~~~~v----~~~l~~~~--~~~iEapTGtGKTla~ 52 (631)
+++-...|.+- .+...|.++-+.+ .+.+-+|- .++.=+.||+|||...
T Consensus 58 ~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 58 VDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp ETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred ecCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 34444444422 1256787776653 33333453 4677899999999976
No 375
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=41.31 E-value=9.8 Score=34.82 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=12.2
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.+++.+|+|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (216)
T 3dl0_A 2 NLVLMGLPGAGKGT 15 (216)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36889999999976
No 376
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=41.18 E-value=11 Score=34.36 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=15.6
Q ss_pred HHhcCCcEEEecCCCChhHH
Q 006790 31 ALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 31 ~l~~~~~~~iEapTGtGKTl 50 (631)
.+..|+.+.|-+|+|+|||-
T Consensus 16 ~i~~Gei~~l~GpnGsGKST 35 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKST 35 (207)
T ss_dssp ---CCCEEEEECSTTSSHHH
T ss_pred CCCCCCEEEEECCCCCCHHH
Confidence 56778899999999999976
No 377
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=41.17 E-value=11 Score=32.87 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=13.1
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..+++.+++|+|||-
T Consensus 3 ~~I~l~G~~GsGKsT 17 (173)
T 1e6c_A 3 EPIFMVGARGCGMTT 17 (173)
T ss_dssp CCEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 368899999999976
No 378
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=40.71 E-value=9.2 Score=36.41 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=13.7
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
...+++++++|+|||-
T Consensus 4 ~~lIvl~G~pGSGKST 19 (260)
T 3a4m_A 4 IMLIILTGLPGVGKST 19 (260)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CEEEEEEcCCCCCHHH
Confidence 3468999999999976
No 379
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=40.60 E-value=11 Score=34.62 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=13.2
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..+++++|+|+|||-
T Consensus 6 ~~I~l~G~~GsGKsT 20 (217)
T 3be4_A 6 HNLILIGAPGSGKGT 20 (217)
T ss_dssp CEEEEEECTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 468999999999976
No 380
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=40.59 E-value=10 Score=35.12 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=12.3
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.+++++|+|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (223)
T 2xb4_A 2 NILIFGPNGSGKGT 15 (223)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999976
No 381
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=40.53 E-value=25 Score=34.04 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=13.5
Q ss_pred cEEEecCCCChhHH-HHHH
Q 006790 37 HCLLEMPTGTGKTI-ALLS 54 (631)
Q Consensus 37 ~~~iEapTGtGKTl-a~L~ 54 (631)
.+.|-+|+|+|||- +-++
T Consensus 33 ii~I~G~sGsGKSTla~~L 51 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQI 51 (290)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 57788999999964 4443
No 382
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=40.44 E-value=9.6 Score=33.88 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=13.2
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..+++++|+|+|||-
T Consensus 7 ~~I~l~G~~GsGKsT 21 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGT 21 (194)
T ss_dssp EEEEEEESTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 368899999999987
No 383
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=39.86 E-value=26 Score=34.30 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=12.5
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..+++-+|+|+|||-
T Consensus 105 ~vi~ivG~~GsGKTT 119 (306)
T 1vma_A 105 FVIMVVGVNGTGKTT 119 (306)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred eEEEEEcCCCChHHH
Confidence 357788999999975
No 384
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=39.83 E-value=26 Score=35.27 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=29.6
Q ss_pred EcCeEeeCC--CCCCChHHHHHHHHHH----HHHhcCC--cEEEecCCCChhHHHHH
Q 006790 5 LEDVTVYFP--YDNIYPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 5 i~~~~~~Fp--y~~~r~~Q~~~~~~v~----~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
+++-...|. |.+ ...|.++-+.+. +.+-+|- .++.=+.||+|||....
T Consensus 48 ~~~~~f~FD~Vf~~-~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 48 IAGKVYLFDKVFKP-NASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp ETTEEEECSEEECT-TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred ECCEEEeCceEecC-CCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEe
Confidence 344444444 333 567887766543 3333453 46778999999999764
No 385
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=39.75 E-value=10 Score=33.29 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.8
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+..+++.+|.|+|||-
T Consensus 8 g~~i~l~G~~GsGKST 23 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSA 23 (175)
T ss_dssp SEEEEEECSTTSCHHH
T ss_pred CcEEEEEcCCCCCHHH
Confidence 4578999999999976
No 386
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=39.69 E-value=12 Score=33.90 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=13.5
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..+++.+|.|+|||-
T Consensus 19 ~~I~l~G~~GsGKST 33 (202)
T 3t61_A 19 GSIVVMGVSGSGKSS 33 (202)
T ss_dssp SCEEEECSTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 479999999999976
No 387
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=39.58 E-value=11 Score=37.64 Aligned_cols=15 Identities=33% Similarity=0.284 Sum_probs=13.3
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..++|-+|||+|||-
T Consensus 8 ~lI~I~GptgSGKTt 22 (340)
T 3d3q_A 8 FLIVIVGPTASGKTE 22 (340)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred ceEEEECCCcCcHHH
Confidence 368899999999987
No 388
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=39.58 E-value=18 Score=37.66 Aligned_cols=48 Identities=15% Similarity=-0.036 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCC-------cEEEecCCCChhHHHHHHHHH-HHHhhCCCCCceEEEEecc
Q 006790 20 EQYSYMLELKRALDAKG-------HCLLEMPTGTGKTIALLSLIT-SYVLSKPENPVKLIYCTRT 76 (631)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~-------~~~iEapTGtGKTla~L~~~l-~~~~~~~~~~~~vi~~t~T 76 (631)
+|...-..+.-++-.|. |+++++++|| ||+ |+-++ +.. .+ +.+|++..
T Consensus 217 G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~--Lar~i~~~i-----~p-R~~ft~g~ 272 (506)
T 3f8t_A 217 GAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSE--ILHHVLDHL-----AP-RGVYVDLR 272 (506)
T ss_dssp TCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHH--HHHHHHHHT-----CS-SEEEEEGG
T ss_pred CCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHH--HHHHHHHHh-----CC-CeEEecCC
Confidence 45555455555566555 8999999999 999 54444 322 24 56665543
No 389
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=39.32 E-value=9.1 Score=33.80 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=9.8
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+..++++++.|+|||-
T Consensus 5 ~~~I~l~G~~GsGKST 20 (183)
T 2vli_A 5 SPIIWINGPFGVGKTH 20 (183)
T ss_dssp CCEEEEECCC----CH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578999999999976
No 390
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=39.24 E-value=10 Score=34.70 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=12.2
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.+++++|+|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (214)
T 1e4v_A 2 RIILLGAPVAGKGT 15 (214)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36899999999976
No 391
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=38.97 E-value=10 Score=36.08 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=13.9
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+..+++|++.|+|||-
T Consensus 24 ~~~I~ieG~~GsGKST 39 (263)
T 1p5z_B 24 IKKISIEGNIAAGKST 39 (263)
T ss_dssp CEEEEEECSTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 3578999999999987
No 392
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=38.83 E-value=14 Score=33.35 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=16.9
Q ss_pred hcCCcEEEecCCCChhHH-HHHHH
Q 006790 33 DAKGHCLLEMPTGTGKTI-ALLSL 55 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTl-a~L~~ 55 (631)
..+..+++-+|.|+|||- +-+++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 446688999999999965 44443
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=38.82 E-value=6.6 Score=35.84 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=12.2
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.+++++|.|+|||-
T Consensus 2 ~I~i~G~~GsGKsT 15 (214)
T 1gtv_A 2 LIAIEGVDGAGKRT 15 (214)
T ss_dssp EEEEEEEEEEEHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 47899999999975
No 394
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=38.71 E-value=16 Score=33.37 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=13.5
Q ss_pred cEEEecCCCChhH-HHHHH
Q 006790 37 HCLLEMPTGTGKT-IALLS 54 (631)
Q Consensus 37 ~~~iEapTGtGKT-la~L~ 54 (631)
++++-+|+|+||| .|-++
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678899999995 55554
No 395
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=38.64 E-value=12 Score=32.57 Aligned_cols=14 Identities=21% Similarity=0.076 Sum_probs=12.3
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.++++++.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (168)
T 2pt5_A 2 RIYLIGFMCSGKST 15 (168)
T ss_dssp EEEEESCTTSCHHH
T ss_pred eEEEECCCCCCHHH
Confidence 47899999999976
No 396
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=38.53 E-value=29 Score=34.91 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCCChhHH
Q 006790 22 YSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 22 ~~~~~~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
.++...+...-.....+++.+++||||++
T Consensus 139 ~~~~~~~~~~a~~~~~vli~GesGtGKe~ 167 (368)
T 3dzd_A 139 LEIKRLIPKIAKSKAPVLITGESGTGKEI 167 (368)
T ss_dssp HHHHHHHHHHHTSCSCEEEECCTTSSHHH
T ss_pred HHHHhhhhhhhccchhheEEeCCCchHHH
Confidence 33333343333445678889999999986
No 397
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=37.99 E-value=23 Score=33.70 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=24.6
Q ss_pred CCcEEEecCCCChhH-HHHHHHHHHHHhhCCCCCceEEEEecchhhHHHHHHHHH
Q 006790 35 KGHCLLEMPTGTGKT-IALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (631)
Q Consensus 35 ~~~~~iEapTGtGKT-la~L~~~l~~~~~~~~~~~~vi~~t~T~~l~~Q~~~el~ 88 (631)
+...++.+++|+||| +|+-.. ..+... +. +++|.|-..+ .+|+++..+
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl--~~g~~~--Ge-~~~~~~~~e~-~~~l~~~~~ 69 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYIL--SRKLKS--DN-LVGMFSISYP-LQLIIRILS 69 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHH--HHHHHT--TC-EEEEEECSSC-HHHHHHHHH
T ss_pred CcEEEEEeCCCccHHHHHHHHH--HHHHHC--CC-cEEEEEEeCC-HHHHHHHHH
Confidence 346778755555555 444332 222222 56 7777765433 345554443
No 398
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=37.75 E-value=19 Score=36.31 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=19.8
Q ss_pred cEEEecCCCChhHHHHHHHHHHHHhhC
Q 006790 37 HCLLEMPTGTGKTIALLSLITSYVLSK 63 (631)
Q Consensus 37 ~~~iEapTGtGKTla~L~~~l~~~~~~ 63 (631)
..+|-+|||+|||- |+=|+.|+...
T Consensus 25 ~~~i~G~NGaGKTT--ll~ai~~al~g 49 (365)
T 3qf7_A 25 ITVVEGPNGAGKSS--LFEAISFALFG 49 (365)
T ss_dssp EEEEECCTTSSHHH--HHHHHHHHHHS
T ss_pred eEEEECCCCCCHHH--HHHHHHHHhcC
Confidence 67799999999996 56677777653
No 399
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=37.37 E-value=14 Score=36.70 Aligned_cols=36 Identities=19% Similarity=0.086 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHH---HHHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLELK---RALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v~---~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
...|.++-+.|. +.+-+|- .++.=+.||+|||....
T Consensus 59 ~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 59 QASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp TCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCcHhHHHHHHHHHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 456877665542 2223443 46778999999999764
No 400
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=37.32 E-value=25 Score=34.29 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=21.9
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T 76 (631)
..+.+-+|+|+|||- |+..++.... +.++ +|.+....
T Consensus 101 ~vi~lvG~nGsGKTT--ll~~Lag~l~-~~~g-~V~l~g~d 137 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTT--SLGKLAHRLK-NEGT-KVLMAAGD 137 (302)
T ss_dssp EEEEEECCTTSCHHH--HHHHHHHHHH-HTTC-CEEEECCC
T ss_pred cEEEEEcCCCCCHHH--HHHHHHHHHH-HcCC-eEEEEeec
Confidence 467788999999976 3322332222 2245 67776543
No 401
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=36.95 E-value=30 Score=34.16 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=21.6
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEec
Q 006790 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~ 75 (631)
+..+.+-+|+|+|||- |+..|+.... +.++ +|.+...
T Consensus 129 g~vi~lvG~nGaGKTT--ll~~Lag~l~-~~~g-~V~l~g~ 165 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTT--TIAKLANWLK-NHGF-SVVIAAS 165 (328)
T ss_dssp SEEEEEECCTTSSHHH--HHHHHHHHHH-HTTC-CEEEEEE
T ss_pred CeEEEEECCCCCCHHH--HHHHHHHHHH-hcCC-EEEEEee
Confidence 4578899999999976 3333332222 2245 5655543
No 402
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=36.08 E-value=19 Score=36.11 Aligned_cols=34 Identities=18% Similarity=0.053 Sum_probs=23.0
Q ss_pred HHHHHHHHHH----HHHhcCC--cEEEecCCCChhHHHHH
Q 006790 20 EQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 20 ~Q~~~~~~v~----~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
.|.++-+.+. +.+-+|- .++.=+.||+|||....
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 5777665543 3333453 57778999999999765
No 403
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=35.01 E-value=14 Score=41.80 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=18.8
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHHHh
Q 006790 35 KGHCLLEMPTGTGKTIALLSLITSYVL 61 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l~~~~ 61 (631)
+.++++.+|+|||||. |+-+++...
T Consensus 511 ~~~vLL~GppGtGKT~--Lakala~~~ 535 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTL--LAKAIANEC 535 (806)
T ss_dssp CCCCCCBCCTTSSHHH--HHHHHHHHH
T ss_pred CceeEEECCCCCCHHH--HHHHHHHHh
Confidence 4678999999999999 554555443
No 404
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=35.01 E-value=12 Score=35.00 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=13.3
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..+++|++.|+|||-
T Consensus 3 ~~i~~~G~~g~GKtt 17 (241)
T 2ocp_A 3 RRLSIEGNIAVGKST 17 (241)
T ss_dssp EEEEEEECTTSSHHH
T ss_pred eEEEEEcCCCCCHHH
Confidence 468999999999986
No 405
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=35.01 E-value=25 Score=42.88 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=27.3
Q ss_pred HhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 006790 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (631)
Q Consensus 32 l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T 76 (631)
+..+.+.++.+|+|||||.-.+.-+...+.. +. +++|.|-.
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~~---G~-~vlYI~te 71 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK-TCAFIDAE 71 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEECTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhC---CC-ceEEEEec
Confidence 3446789999999999999555544444432 44 56665544
No 406
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=34.85 E-value=21 Score=34.57 Aligned_cols=19 Identities=37% Similarity=0.368 Sum_probs=14.8
Q ss_pred cEEEecCCCChhHHHHHHHHH
Q 006790 37 HCLLEMPTGTGKTIALLSLIT 57 (631)
Q Consensus 37 ~~~iEapTGtGKTla~L~~~l 57 (631)
.+++-+|+|+|||- |+-.|
T Consensus 35 livl~G~sGsGKST--la~~L 53 (287)
T 1gvn_B 35 AFLLGGQPGSGKTS--LRSAI 53 (287)
T ss_dssp EEEEECCTTSCTHH--HHHHH
T ss_pred EEEEECCCCCCHHH--HHHHH
Confidence 58899999999987 44444
No 407
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=34.42 E-value=13 Score=34.16 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.6
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+..+.|.+|.|+|||-
T Consensus 4 ~~~I~i~G~~GSGKST 19 (218)
T 1vht_A 4 RYIVALTGGIGSGKST 19 (218)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 3468899999999986
No 408
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=34.39 E-value=27 Score=34.89 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHH----HHHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
+..|.++-+.+. +.+-+|. .++.=+.||+|||....
T Consensus 70 ~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 70 YAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred cccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 456877755543 3334453 46777999999999764
No 409
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=34.36 E-value=27 Score=34.74 Aligned_cols=36 Identities=19% Similarity=0.008 Sum_probs=24.4
Q ss_pred ChHHHHHHHHH----HHHHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v----~~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
-..|.++-+.+ .+.+-+|. .++.=+.||+|||....
T Consensus 61 ~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 61 DAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102 (344)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHC
T ss_pred CcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeec
Confidence 56787776653 33333453 46778999999999763
No 410
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=34.27 E-value=61 Score=31.44 Aligned_cols=18 Identities=11% Similarity=-0.001 Sum_probs=14.2
Q ss_pred hcCCcEEEecCCCChhHH
Q 006790 33 DAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTl 50 (631)
..+..+.|-+|+|+|||-
T Consensus 78 ~~g~iigI~G~~GsGKST 95 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKST 95 (308)
T ss_dssp CCCEEEEEEECTTSSHHH
T ss_pred CCCEEEEEECCCCCCHHH
Confidence 334578889999999975
No 411
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=33.89 E-value=26 Score=41.31 Aligned_cols=80 Identities=10% Similarity=0.161 Sum_probs=57.1
Q ss_pred cCCcEEEEecchHHHHHHHHHHhhcchHHHHhcCCeEEEeCCC-chhhHHHHHHHHHhhcCCCCeEEEEEecCccccccc
Q 006790 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (631)
Q Consensus 531 ~~gg~LVfF~Sy~~l~~v~~~~~~~~~~~~l~~~~~v~~e~~~-~~~~~~~l~~fk~~~~~~~~aILfgv~~Gsf~EGID 609 (631)
.+|.++||+++-+..+.+++.|+.. +...+..++-++- ..++...+++|++ |+-.||+|+ ..+.+|||
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~-----~p~~~v~~lhg~~~~~eR~~il~~F~~----g~~~VLVaT--~v~e~GiD 879 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAEL-----VPEARIAIGHGQMRERELERVMNDFHH----QRFNVLVCT--TIIETGID 879 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHH-----CTTSCEEECCSSCCHHHHHHHHHHHHT----TSCCEEEES--STTGGGSC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHh-----CCCCeEEEEeCCCCHHHHHHHHHHHHc----CCCcEEEEC--Ccceeeec
Confidence 3678999999999999999988753 1112333333332 2345667788875 677899999 68999999
Q ss_pred CCCCCceEEEEEcc
Q 006790 610 FDRHYGRLVIMFGV 623 (631)
Q Consensus 610 f~g~~lr~VII~gL 623 (631)
+|+ ++.||+.+-
T Consensus 880 ip~--v~~VIi~~~ 891 (1151)
T 2eyq_A 880 IPT--ANTIIIERA 891 (1151)
T ss_dssp CTT--EEEEEETTT
T ss_pred ccC--CcEEEEeCC
Confidence 995 778887765
No 412
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=33.70 E-value=21 Score=35.80 Aligned_cols=36 Identities=19% Similarity=0.069 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHHH----HHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v~~----~l~~~~--~~~iEapTGtGKTla~L 53 (631)
...|.++-+.+.. .+-+|- .++.=+.||+|||....
T Consensus 66 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 66 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred cCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 5678887766543 333453 46778999999999665
No 413
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=33.48 E-value=25 Score=32.90 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.1
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
...++|.+|.|+|||-
T Consensus 27 ~~~i~l~G~~GsGKST 42 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGT 42 (246)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4689999999999976
No 414
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=33.45 E-value=24 Score=35.53 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=24.0
Q ss_pred hHHHHHHHHHH----HHHhcCC--cEEEecCCCChhHHHHH
Q 006790 19 PEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 19 ~~Q~~~~~~v~----~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
..|.++-+.+. +.+-+|- .++.=+.||+|||....
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 56888776654 3333453 46777999999998664
No 415
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=33.11 E-value=43 Score=29.41 Aligned_cols=38 Identities=16% Similarity=-0.064 Sum_probs=21.8
Q ss_pred cEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchh
Q 006790 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (631)
Q Consensus 37 ~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~ 78 (631)
.+.+-++.|+|||- |+..|.-.... .+. +|-+....+.
T Consensus 6 ~i~i~G~sGsGKTT--l~~~L~~~l~~-~g~-~v~~ik~~~~ 43 (169)
T 1xjc_A 6 VWQVVGYKHSGKTT--LMEKWVAAAVR-EGW-RVGTVKHHGH 43 (169)
T ss_dssp EEEEECCTTSSHHH--HHHHHHHHHHH-TTC-CEEEEECCC-
T ss_pred EEEEECCCCCCHHH--HHHHHHHhhHh-cCC-eeeEEEeCCC
Confidence 56788999999987 33333322211 134 6766665543
No 416
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=33.05 E-value=20 Score=36.99 Aligned_cols=14 Identities=43% Similarity=0.399 Sum_probs=12.3
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
++++-+++|+|||-
T Consensus 101 vI~ivG~~GvGKTT 114 (432)
T 2v3c_C 101 VILLVGIQGSGKTT 114 (432)
T ss_dssp CEEEECCSSSSTTH
T ss_pred EEEEECCCCCCHHH
Confidence 67788999999986
No 417
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=32.84 E-value=32 Score=34.44 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=21.6
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T 76 (631)
..+.+-+|+|+|||- |+..|+.... +.++ +|.+....
T Consensus 158 ~vi~lvG~nGsGKTT--ll~~Lag~l~-~~~G-~V~l~g~D 194 (359)
T 2og2_A 158 AVIMIVGVNGGGKTT--SLGKLAHRLK-NEGT-KVLMAAGD 194 (359)
T ss_dssp EEEEEECCTTSCHHH--HHHHHHHHHH-HTTC-CEEEECCC
T ss_pred eEEEEEcCCCChHHH--HHHHHHhhcc-ccCC-EEEEeccc
Confidence 467888999999976 2222322222 1245 67666543
No 418
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=32.78 E-value=13 Score=34.86 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=27.9
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHH
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
+.++++++.|+-.. ++ ....|-=.+..|+.+.|-+|.|+|||-
T Consensus 4 l~~~~l~~~y~~~~-~~----vl~~vsl~i~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 4 ITVRNATFTWARSD-PP----TLNGITFSIPEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp EEEEEEEEESCTTS-CC----SEEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred EEEEEEEEEeCCCC-Cc----eeeeeEEEECCCCEEEEECCCCCCHHH
Confidence 77888888886321 11 112222234557889999999999976
No 419
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=32.64 E-value=26 Score=35.32 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHH----HHHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
-..|.++-+.+. +.+-+|- .++.=+.||+|||....
T Consensus 78 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 78 ESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 456877766543 3333443 56778999999999765
No 420
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=32.63 E-value=23 Score=35.66 Aligned_cols=36 Identities=22% Similarity=0.111 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHH----HHHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
...|.++-+.+. +.+-+|- .++.=+.||+|||....
T Consensus 79 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp TCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 467877765543 3333453 56778999999999764
No 421
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=32.48 E-value=14 Score=32.98 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.8
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..+++-+|.|+|||-
T Consensus 3 ~ii~l~G~~GaGKST 17 (189)
T 2bdt_A 3 KLYIITGPAGVGKST 17 (189)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECCCCCcHHH
Confidence 467889999999977
No 422
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=32.44 E-value=40 Score=33.11 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=19.7
Q ss_pred cEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 37 ~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
.+++-+|+|+|||-....-|..++. .++ +|++..
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~---~g~-kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAE---LGY-KVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH---TTC-CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---CCC-eEEEEe
Confidence 4677799999998633332223332 245 665553
No 423
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=32.21 E-value=16 Score=33.99 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=13.8
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+..+++|++.|+|||-
T Consensus 21 ~~~i~~~G~~g~GKst 36 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTT 36 (223)
T ss_dssp CEEEEEECSTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578999999999975
No 424
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=32.19 E-value=14 Score=33.45 Aligned_cols=17 Identities=24% Similarity=0.006 Sum_probs=13.9
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.+..+.|-+|+|+|||-
T Consensus 5 ~~~~i~i~G~~GsGKST 21 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTT 21 (211)
T ss_dssp CCEEEEEEESTTSSHHH
T ss_pred CcEEEEEECCCCCCHHH
Confidence 44578889999999975
No 425
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=32.17 E-value=19 Score=35.99 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=16.3
Q ss_pred cCCcEEEecCCCChhHHHHHH
Q 006790 34 AKGHCLLEMPTGTGKTIALLS 54 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L~ 54 (631)
.|....|-+|+|+|||--.+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456789999999999774444
No 426
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=31.98 E-value=23 Score=35.82 Aligned_cols=36 Identities=31% Similarity=0.242 Sum_probs=24.7
Q ss_pred ChHHHHHHHHH----HHHHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v----~~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
...|.++-+.+ .+.+-+|. .++.=+.||+|||....
T Consensus 76 ~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 76 RSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 56788777653 33344453 46778999999999764
No 427
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=31.97 E-value=35 Score=34.79 Aligned_cols=20 Identities=20% Similarity=-0.087 Sum_probs=16.2
Q ss_pred cCCcEEEecCCCChhHHHHH
Q 006790 34 AKGHCLLEMPTGTGKTIALL 53 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L 53 (631)
.+....|-+|+|+|||--.+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHH
Confidence 35689999999999987444
No 428
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=31.96 E-value=33 Score=34.31 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=23.1
Q ss_pred hHHHHHHHHHH----HHHhcCC--cEEEecCCCChhHHHHH
Q 006790 19 PEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 19 ~~Q~~~~~~v~----~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
..|.++-+.+. +.+-+|. .++.=+.||+|||....
T Consensus 82 ~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 82 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEec
Confidence 45777665543 3333453 46777999999999764
No 429
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=31.86 E-value=36 Score=35.09 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=19.6
Q ss_pred cEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 37 ~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
.+++-+++|+|||-...--|..++... ++ +|.+.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~--G~-kVllv 135 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKH--KK-KVLVV 135 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTS--CC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc--CC-eEEEE
Confidence 455669999999984443333333321 35 55554
No 430
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=31.38 E-value=27 Score=34.95 Aligned_cols=36 Identities=14% Similarity=0.003 Sum_probs=24.1
Q ss_pred ChHHHHHHHHH----HHHHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v----~~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
...|.++-+.+ .+.+-+|- .++.=+.||+|||....
T Consensus 58 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 58 SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp TCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEee
Confidence 45687766643 33333453 46778999999999664
No 431
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=31.16 E-value=14 Score=34.50 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=34.3
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
+.+.|+++.|+-.. + .......|-=.+..|+.+.|-+|.|+|||- |+-+++-. ..+... .|.+--
T Consensus 2 l~~~~l~~~y~~~~--~-~~~~L~~isl~i~~Ge~~~iiG~nGsGKST--Ll~~l~Gl-~~p~~G-~I~~~g 66 (235)
T 3tif_A 2 VKLKNVTKTYKMGE--E-IIYALKNVNLNIKEGEFVSIMGPSGSGKST--MLNIIGCL-DKPTEG-EVYIDN 66 (235)
T ss_dssp EEEEEEEEEEEETT--E-EEEEEEEEEEEECTTCEEEEECSTTSSHHH--HHHHHTTS-SCCSEE-EEEETT
T ss_pred EEEEEEEEEeCCCC--c-ceeeEEeeeEEEcCCCEEEEECCCCCcHHH--HHHHHhcC-CCCCce-EEEECC
Confidence 45667777665321 0 000111222234567889999999999986 44433322 223334 666643
No 432
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=31.15 E-value=25 Score=35.84 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=24.5
Q ss_pred ChHHHHHHHHH----HHHHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v----~~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
-..|.++-+.+ .+.+-+|. .++.=+.||+|||....
T Consensus 132 ~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 132 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred CCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 56787776543 33334453 46777999999999765
No 433
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=31.01 E-value=16 Score=33.41 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=17.1
Q ss_pred HHhcCCcEEEecCCCChhHHHH
Q 006790 31 ALDAKGHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 31 ~l~~~~~~~iEapTGtGKTla~ 52 (631)
.+..|....|-+|+|+|||.-.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHH
Confidence 3445678999999999998733
No 434
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=30.82 E-value=18 Score=32.66 Aligned_cols=16 Identities=25% Similarity=0.023 Sum_probs=13.5
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+..+.|-+|+|+|||-
T Consensus 21 ~~~i~i~G~~GsGKST 36 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTT 36 (207)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4567899999999986
No 435
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=30.72 E-value=22 Score=35.44 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHH----HHHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
-..|.++-+.+. +.+-+|- .++.=+.||+|||....
T Consensus 55 ~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp TSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 557888776543 3333453 46778999999999664
No 436
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=30.52 E-value=24 Score=35.33 Aligned_cols=36 Identities=25% Similarity=0.153 Sum_probs=24.6
Q ss_pred ChHHHHHHHHH----HHHHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v----~~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
...|.++-+.+ .+.+-+|. .++.=+.||+|||....
T Consensus 83 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 83 TSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp TCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 45688776554 33344453 46778999999999764
No 437
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=30.47 E-value=36 Score=35.12 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHHH----HHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v~~----~l~~~~--~~~iEapTGtGKTla~L 53 (631)
+..|.++-+.+.. .+-+|- .++.=+.||+|||....
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 4578887665543 333443 46778999999999764
No 438
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=30.43 E-value=15 Score=33.78 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=33.8
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
+.+.++++.|+- .....|-=.+..|+.+.|-+|.|+|||- |+-+++-. ..+... .|.+.-
T Consensus 11 l~~~~ls~~y~~--------~il~~vsl~i~~Ge~~~iiG~NGsGKST--Llk~l~Gl-~~p~~G-~I~~~g 70 (214)
T 1sgw_A 11 LEIRDLSVGYDK--------PVLERITMTIEKGNVVNFHGPNGIGKTT--LLKTISTY-LKPLKG-EIIYNG 70 (214)
T ss_dssp EEEEEEEEESSS--------EEEEEEEEEEETTCCEEEECCTTSSHHH--HHHHHTTS-SCCSEE-EEEETT
T ss_pred EEEEEEEEEeCC--------eEEeeeEEEEcCCCEEEEECCCCCCHHH--HHHHHhcC-CCCCCe-EEEECC
Confidence 566777766631 1122222234567889999999999987 44333322 223334 666643
No 439
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.25 E-value=21 Score=36.59 Aligned_cols=36 Identities=17% Similarity=0.053 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHH---HHHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLELK---RALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v~---~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
-..|.++-+.|. +.+-+|- .++.=+.||+|||....
T Consensus 117 ~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 117 LSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp TCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEec
Confidence 456766654433 2223343 56777999999999764
No 440
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=30.25 E-value=14 Score=39.97 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=36.4
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
+.++|+++.||-.. ....+.+-=.+..|+.+.+-+|+|+|||- |+-.+.- ...|+.+ +|.+--
T Consensus 342 i~~~~v~~~y~~~~-----~~~l~~i~l~i~~G~~~~ivG~sGsGKST--ll~~l~g-~~~p~~G-~i~~~g 404 (582)
T 3b5x_A 342 VDVKDVTFTYQGKE-----KPALSHVSFSIPQGKTVALVGRSGSGKST--IANLFTR-FYDVDSG-SICLDG 404 (582)
T ss_pred EEEEEEEEEcCCCC-----ccccccceEEECCCCEEEEECCCCCCHHH--HHHHHhc-CCCCCCC-EEEECC
Confidence 45666666664211 12344444455678899999999999975 3322322 1223445 676643
No 441
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=30.12 E-value=91 Score=28.16 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=13.5
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
++.+++|++-|+|||-
T Consensus 2 ~kFI~~EG~dGsGKsT 17 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTT 17 (205)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CCEEEEECCCCCcHHH
Confidence 3568999999999976
No 442
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=30.12 E-value=15 Score=34.22 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=26.5
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHH
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
+.++++++.|+-.. ++ ....|-=.+..|+.+.|-+|.|+|||-
T Consensus 7 l~~~~l~~~y~~~~-~~----il~~vsl~i~~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 7 VVMENVTAFWEEGG-TP----VLKDINFKIERGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp EEEEEEEECSSTTS-CC----SEEEEEEEEETTCEEEEECCTTSSHHH
T ss_pred EEEEEEEEEeCCCC-ce----eeeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 56777777764221 11 111222233557889999999999986
No 443
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=30.11 E-value=27 Score=34.57 Aligned_cols=26 Identities=27% Similarity=0.127 Sum_probs=20.3
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhC
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSK 63 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~ 63 (631)
+.-+|-+|+|+|||- |+=|+.|+...
T Consensus 24 ~~~~i~G~NGsGKS~--lleAi~~~l~~ 49 (339)
T 3qkt_A 24 GINLIIGQNGSGKSS--LLDAILVGLYW 49 (339)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHhcC
Confidence 456789999999998 66677777654
No 444
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=30.09 E-value=22 Score=31.31 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=12.9
Q ss_pred CcEEEecCCCChhHH
Q 006790 36 GHCLLEMPTGTGKTI 50 (631)
Q Consensus 36 ~~~~iEapTGtGKTl 50 (631)
..+++-+++|+|||-
T Consensus 3 ~~I~l~G~~GsGKsT 17 (184)
T 2iyv_A 3 PKAVLVGLPGSGKST 17 (184)
T ss_dssp CSEEEECSTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 357899999999976
No 445
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=29.95 E-value=25 Score=35.09 Aligned_cols=36 Identities=19% Similarity=0.051 Sum_probs=24.2
Q ss_pred ChHHHHHHHHH----HHHHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v----~~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
...|.++-+.+ .+.+-+|- .++.=+.||+|||....
T Consensus 67 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 67 TSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEee
Confidence 56787776553 33333453 56778999999999763
No 446
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=29.67 E-value=36 Score=34.57 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=29.5
Q ss_pred cCeEeeCCCCCCChH--HHHHHHHHHHHH---hcCCcEEEecCCCChhHHHH
Q 006790 6 EDVTVYFPYDNIYPE--QYSYMLELKRAL---DAKGHCLLEMPTGTGKTIAL 52 (631)
Q Consensus 6 ~~~~~~Fpy~~~r~~--Q~~~~~~v~~~l---~~~~~~~iEapTGtGKTla~ 52 (631)
++.+-.+|.+..++. ..+.--.+.+++ .+|+-.+|=||.|+|||.-.
T Consensus 141 e~l~Pi~P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 141 DNLTPDYPRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp GGSCEECCCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHH
T ss_pred ccCCCCCchhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHH
Confidence 334445777644443 223334555655 34678899999999999833
No 447
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=29.45 E-value=20 Score=32.80 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=14.9
Q ss_pred CCcEEEecCCCChhHH-HHHH
Q 006790 35 KGHCLLEMPTGTGKTI-ALLS 54 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl-a~L~ 54 (631)
+..+.|-+|+|+|||- +-++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 3568899999999965 4443
No 448
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=29.40 E-value=16 Score=34.55 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=35.6
Q ss_pred eEEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 2 ~~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
++.++++++.||-.. ++ ....|-=.+..|+.+.|-+|.|+|||- |+-+++-. ..+... .|.|-
T Consensus 7 ~~~~~~l~~~y~~~~-~~----vl~~vsl~i~~Ge~~~i~G~nGsGKST--Ll~~l~Gl-~~p~~G-~I~i~ 69 (247)
T 2ff7_A 7 DITFRNIRFRYKPDS-PV----ILDNINLSIKQGEVIGIVGRSGSGKST--LTKLIQRF-YIPENG-QVLID 69 (247)
T ss_dssp EEEEEEEEEESSTTS-CE----EEEEEEEEEETTCEEEEECSTTSSHHH--HHHHHTTS-SCCSEE-EEEET
T ss_pred ceeEEEEEEEeCCCC-cc----eeeeeEEEEcCCCEEEEECCCCCCHHH--HHHHHhcC-CCCCCc-EEEEC
Confidence 467788888774111 11 122222234567889999999999987 44333322 223334 67664
No 449
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=29.37 E-value=18 Score=36.41 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=23.9
Q ss_pred ChHHHHHHHHH---HHHHhcCC--cEEEecCCCChhHHHHH
Q 006790 18 YPEQYSYMLEL---KRALDAKG--HCLLEMPTGTGKTIALL 53 (631)
Q Consensus 18 r~~Q~~~~~~v---~~~l~~~~--~~~iEapTGtGKTla~L 53 (631)
...|.++-+.+ .+.+-+|- .++.=+.||+|||....
T Consensus 58 ~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 58 NATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp TCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred CCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 56787776543 33333453 46777999999999764
No 450
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=29.31 E-value=17 Score=34.01 Aligned_cols=28 Identities=14% Similarity=-0.198 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCChhHH
Q 006790 23 SYMLELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 23 ~~~~~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
.....|.=.+..+..+.|-+|.|+|||-
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKST 40 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKST 40 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHH
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHH
Confidence 3455555556667778899999999975
No 451
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=29.00 E-value=23 Score=30.99 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=12.4
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
+++|-+|.|+|||-
T Consensus 6 ~i~i~G~~GsGKsT 19 (175)
T 1via_A 6 NIVFIGFMGSGKST 19 (175)
T ss_dssp CEEEECCTTSCHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 58889999999976
No 452
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=28.79 E-value=30 Score=36.25 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=20.5
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
..+.+-+|+|+|||- |+..|+.... +.++ +|.+.
T Consensus 294 eVI~LVGpNGSGKTT--Ll~~LAgll~-~~~G-~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGVNGVGKTT--TIGKLARQFE-QQGK-SVMLA 327 (503)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHH-HTTC-CEEEE
T ss_pred eEEEEECCCcccHHH--HHHHHHHHhh-hcCC-eEEEe
Confidence 467888999999976 2222332222 1245 77775
No 453
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=28.78 E-value=17 Score=34.68 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=35.0
Q ss_pred eEEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 2 ~~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
.+.++++++.|+-...++ ....|-=.+..|+.+.|-+|.|+|||- |+-+++-.. .+ .. .|.+-
T Consensus 17 ~l~i~~l~~~y~~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKST--Ll~~l~Gl~-~~-~G-~I~i~ 79 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHR----TLKSINFFIPSGTTCALVGHTGSGKST--IAKLLYRFY-DA-EG-DIKIG 79 (260)
T ss_dssp CEEEEEEEECCTTCCSSC----SEEEEEEEECTTCEEEEECSTTSSHHH--HHHHHTTSS-CC-EE-EEEET
T ss_pred eEEEEEEEEEeCCCCcCc----eeEeeEEEECCCCEEEEECCCCCCHHH--HHHHHhccC-CC-Ce-EEEEC
Confidence 367788887775321000 122222234567889999999999977 443333222 12 34 66664
No 454
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=28.75 E-value=15 Score=34.06 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=34.3
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
+.++|+++.|+- ++ ....|-=.+..|+.+.|-+|.|+|||- |+-+++-. ..+... +|.+.
T Consensus 5 l~~~~l~~~y~~---~~----~l~~vsl~i~~Ge~~~iiG~nGsGKST--Ll~~l~Gl-~~p~~G-~i~~~ 64 (224)
T 2pcj_A 5 LRAENIKKVIRG---YE----ILKGISLSVKKGEFVSIIGASGSGKST--LLYILGLL-DAPTEG-KVFLE 64 (224)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEEETTCEEEEEECTTSCHHH--HHHHHTTS-SCCSEE-EEEET
T ss_pred EEEEeEEEEECC---Ee----eEeeeEEEEcCCCEEEEECCCCCCHHH--HHHHHhcC-CCCCce-EEEEC
Confidence 567777777642 11 122222234567888999999999986 44333322 223334 67664
No 455
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=28.45 E-value=26 Score=31.12 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.3
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
+.-+++-++.|+|||-
T Consensus 16 G~gvli~G~SGaGKSt 31 (181)
T 3tqf_A 16 KMGVLITGEANIGKSE 31 (181)
T ss_dssp TEEEEEEESSSSSHHH
T ss_pred CEEEEEEcCCCCCHHH
Confidence 3458899999999985
No 456
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=28.44 E-value=29 Score=33.96 Aligned_cols=22 Identities=14% Similarity=-0.076 Sum_probs=15.6
Q ss_pred cCCcEEEecCCCChhHH-HHHHH
Q 006790 34 AKGHCLLEMPTGTGKTI-ALLSL 55 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl-a~L~~ 55 (631)
.+..+.|-+|+|+|||- +-++.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHH
Confidence 34578889999999965 43443
No 457
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=28.14 E-value=31 Score=34.88 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=24.6
Q ss_pred ChHHHHHHHHH----HHHHhcCC--cEEEecCCCChhHHHHHH
Q 006790 18 YPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIALLS 54 (631)
Q Consensus 18 r~~Q~~~~~~v----~~~l~~~~--~~~iEapTGtGKTla~L~ 54 (631)
...|.++-+.+ .+.+-+|. .++.=+.||+|||....=
T Consensus 112 ~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 112 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred CCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 56787776553 33334453 567789999999997653
No 458
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=28.01 E-value=22 Score=31.52 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=11.9
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
++.+-+|.|+|||-
T Consensus 2 ~i~l~G~nGsGKTT 15 (178)
T 1ye8_A 2 KIIITGEPGVGKTT 15 (178)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46788999999976
No 459
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=27.71 E-value=39 Score=30.23 Aligned_cols=16 Identities=44% Similarity=0.688 Sum_probs=13.1
Q ss_pred CCcEEEecCCCChhHH
Q 006790 35 KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 35 ~~~~~iEapTGtGKTl 50 (631)
|..+.+-+|.|+|||-
T Consensus 1 G~~i~i~G~nG~GKTT 16 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTT 16 (189)
T ss_dssp CCCEEEESCCSSCHHH
T ss_pred CCEEEEECCCCChHHH
Confidence 3467888999999976
No 460
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=27.44 E-value=15 Score=34.49 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=34.3
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
+.+.++++.|+ .. ++ ....|-=.+..|+.+.|-+|.|+|||- |+-+++-. ..+... +|.+-
T Consensus 2 l~~~~l~~~y~-~~-~~----vl~~vsl~i~~Ge~~~i~G~nGsGKST--Ll~~l~Gl-~~p~~G-~i~~~ 62 (243)
T 1mv5_A 2 LSARHVDFAYD-DS-EQ----ILRDISFEAQPNSIIAFAGPSGGGKST--IFSLLERF-YQPTAG-EITID 62 (243)
T ss_dssp EEEEEEEECSS-SS-SC----SEEEEEEEECTTEEEEEECCTTSSHHH--HHHHHTTS-SCCSBS-CEEET
T ss_pred EEEEEEEEEeC-CC-Cc----eEEEeEEEEcCCCEEEEECCCCCCHHH--HHHHHhcC-CCCCCc-EEEEC
Confidence 56778877764 21 11 122222234557788999999999987 44333322 223334 67664
No 461
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=27.42 E-value=1.3e+02 Score=28.99 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=21.7
Q ss_pred CcEEEecC-CCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 36 GHCLLEMP-TGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 36 ~~~~iEap-TGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
+.++|-++ .|.|||.....-|..++.. ++ ||++.-
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~---G~-rVLLID 140 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQS---DQ-KVLFID 140 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHT---TC-CEEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhC---CC-cEEEEE
Confidence 44555555 7999998655555555542 46 676653
No 462
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=27.12 E-value=18 Score=34.29 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=33.7
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
+.+.|+++.|+- ++ ....|-=.+..|..+.|-+|.|+|||- |+-+++-. ..+... .|.+.
T Consensus 16 l~i~~l~~~y~~---~~----vl~~vsl~i~~Gei~~l~G~NGsGKST--Llk~l~Gl-~~p~~G-~I~~~ 75 (256)
T 1vpl_A 16 VVVKDLRKRIGK---KE----ILKGISFEIEEGEIFGLIGPNGAGKTT--TLRIISTL-IKPSSG-IVTVF 75 (256)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEECTTCEEEEECCTTSSHHH--HHHHHTTS-SCCSEE-EEEET
T ss_pred EEEEEEEEEECC---EE----EEEeeEEEEcCCcEEEEECCCCCCHHH--HHHHHhcC-CCCCce-EEEEC
Confidence 567777776641 11 122222234567889999999999987 44333322 223334 67664
No 463
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=27.05 E-value=34 Score=36.73 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=18.9
Q ss_pred HHHHHHHHhc----CCcEEEecCCCChhHH
Q 006790 25 MLELKRALDA----KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 25 ~~~v~~~l~~----~~~~~iEapTGtGKTl 50 (631)
+..+.+.+.. ...++|.||.|+|||-
T Consensus 133 l~~L~~~L~~~~~~~~~v~I~G~~GiGKTt 162 (591)
T 1z6t_A 133 VNAIQQKLSKLKGEPGWVTIHGMAGCGKSV 162 (591)
T ss_dssp HHHHHHHHTTSTTSCEEEEEECCTTSSHHH
T ss_pred HHHHHHHHhcccCCCceEEEEcCCCCCHHH
Confidence 3455556642 3478999999999997
No 464
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=27.02 E-value=18 Score=34.30 Aligned_cols=60 Identities=17% Similarity=0.325 Sum_probs=34.5
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
+.++|+++.|+- ++ ....|-=.+..|+.+.|-+|.|+|||- |+-+++-. ..++.+ .|.+.
T Consensus 8 l~i~~l~~~y~~---~~----vl~~vsl~i~~Ge~~~liG~nGsGKST--Llk~l~Gl-~~p~~G-~i~~~ 67 (257)
T 1g6h_A 8 LRTENIVKYFGE---FK----ALDGVSISVNKGDVTLIIGPNGSGKST--LINVITGF-LKADEG-RVYFE 67 (257)
T ss_dssp EEEEEEEEEETT---EE----EEEEECCEEETTCEEEEECSTTSSHHH--HHHHHTTS-SCCSEE-EEEET
T ss_pred EEEeeeEEEECC---Ee----eEeeeEEEEeCCCEEEEECCCCCCHHH--HHHHHhCC-CCCCCc-EEEEC
Confidence 567787777642 11 122222234567888999999999977 44333322 223334 66664
No 465
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=27.02 E-value=65 Score=33.04 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=13.0
Q ss_pred cEEEecCCCChhHHHHHH
Q 006790 37 HCLLEMPTGTGKTIALLS 54 (631)
Q Consensus 37 ~~~iEapTGtGKTla~L~ 54 (631)
.+++-+|+|+|||-....
T Consensus 100 vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 456669999999874333
No 466
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=26.98 E-value=41 Score=34.40 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCC--------------------cEEEecCCCChhHHHHHHHHHH
Q 006790 23 SYMLELKRALDAKG--------------------HCLLEMPTGTGKTIALLSLITS 58 (631)
Q Consensus 23 ~~~~~v~~~l~~~~--------------------~~~iEapTGtGKTla~L~~~l~ 58 (631)
..+..|.-.+..|+ .+.+-+|+|+|||- |+-+|.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKST--Lln~L~ 90 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSS--FINTLR 90 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHH--HHHHHH
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHH--HHHHHh
Confidence 45556666666666 88899999999987 544443
No 467
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=26.90 E-value=36 Score=42.22 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=28.9
Q ss_pred hcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecchh
Q 006790 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T~~ 78 (631)
..+.++++.+|+|||||.-.+.-+...++ .+. +++|.|-.+.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k---~Ge-~~~Fit~ee~ 1120 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGK-TCAFIDAEHA 1120 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTC-CEEEECTTSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH---cCC-eEEEEEcccc
Confidence 35678999999999999855543333332 256 7888877654
No 468
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=26.89 E-value=29 Score=34.02 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.2
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHh
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVL 61 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~ 61 (631)
+..+|-+|+|+|||- |+-|+.|+.
T Consensus 25 g~~~i~G~NGsGKS~--ll~ai~~ll 48 (322)
T 1e69_A 25 RVTAIVGPNGSGKSN--IIDAIKWVF 48 (322)
T ss_dssp SEEEEECCTTTCSTH--HHHHHHHTS
T ss_pred CcEEEECCCCCcHHH--HHHHHHHHh
Confidence 378899999999998 777788764
No 469
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=26.89 E-value=18 Score=33.85 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=34.0
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
+.++|+++.|+-. + ....|-=.+..|..+.|-+|.|+|||- |+-+++-. ..++.. .|.+.
T Consensus 7 l~~~~l~~~y~~~---~----vl~~vsl~i~~Ge~~~l~G~nGsGKST--Ll~~l~Gl-~~p~~G-~i~~~ 66 (240)
T 1ji0_A 7 LEVQSLHVYYGAI---H----AIKGIDLKVPRGQIVTLIGANGAGKTT--TLSAIAGL-VRAQKG-KIIFN 66 (240)
T ss_dssp EEEEEEEEEETTE---E----EEEEEEEEEETTCEEEEECSTTSSHHH--HHHHHTTS-SCCSEE-EEEET
T ss_pred EEEEeEEEEECCe---e----EEeeeEEEEcCCCEEEEECCCCCCHHH--HHHHHhCC-CCCCCc-eEEEC
Confidence 5677777776421 1 122222234567888999999999987 44333322 223334 66664
No 470
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=26.73 E-value=19 Score=34.07 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=26.7
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHH
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
+.+.++++.|+= ++ ....|-=.+..|+.+.|-+|.|+|||-
T Consensus 4 l~~~~l~~~y~~---~~----vl~~vsl~i~~Ge~~~l~G~nGsGKST 44 (250)
T 2d2e_A 4 LEIRDLWASIDG---ET----ILKGVNLVVPKGEVHALMGPNGAGKST 44 (250)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEEETTCEEEEECSTTSSHHH
T ss_pred EEEEeEEEEECC---EE----EEeceEEEEcCCCEEEEECCCCCCHHH
Confidence 677888777741 11 122222234567889999999999976
No 471
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=26.71 E-value=19 Score=34.10 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=23.5
Q ss_pred HhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 32 l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
+..|+.+.+-+|.|+|||- |+-+++-. ..+. . .|.+.
T Consensus 23 i~~Ge~~~liG~NGsGKST--Llk~l~Gl-~~p~-G-~i~~~ 59 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKST--LLARMAGM-TSGK-G-SIQFA 59 (249)
T ss_dssp EETTCEEEEECCTTSSHHH--HHHHHTTS-SCCE-E-EEEET
T ss_pred EcCCCEEEEECCCCCcHHH--HHHHHhCC-CCCC-e-EEEEC
Confidence 3457788999999999986 44333321 2233 4 66664
No 472
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=26.48 E-value=42 Score=40.90 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=25.5
Q ss_pred cCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 006790 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T 76 (631)
.+..++|-||+|+|||.-.+.-+...+.. +. +|+|.+--
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~---g~-~VlyiS~E 769 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK-TCAFIDAE 769 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEECTT
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHc---CC-CeEEEecc
Confidence 34578999999999998666554444432 34 56665433
No 473
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=26.19 E-value=1.6e+02 Score=27.85 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=21.3
Q ss_pred CcEEEecC-CCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 36 GHCLLEMP-TGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 36 ~~~~iEap-TGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
+.+++-++ .|.|||.....-|..++.. ++ ||++.
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~---G~-rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQA---GY-KTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhC---CC-eEEEE
Confidence 34555555 7999998665555555542 45 67665
No 474
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=26.09 E-value=20 Score=34.25 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=37.5
Q ss_pred CeEEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 1 ~~~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
|.+.++|+++.|+..... +......|-=.+..|..+.|-+|.|+|||- |+-+++-. ..+..+ .|.+--
T Consensus 1 ~~l~~~~l~~~y~~~~~~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKST--Ll~~i~Gl-~~p~~G-~I~~~g 68 (266)
T 2yz2_A 1 MRIEVVNVSHIFHRGTPL--EKKALENVSLVINEGECLLVAGNTGSGKST--LLQIVAGL-IEPTSG-DVLYDG 68 (266)
T ss_dssp CCEEEEEEEEEESTTSTT--CEEEEEEEEEEECTTCEEEEECSTTSSHHH--HHHHHTTS-SCCSEE-EEEETT
T ss_pred CEEEEEEEEEEecCCCcc--ccceeeeeEEEEcCCCEEEEECCCCCcHHH--HHHHHhCC-CCCCCc-EEEECC
Confidence 557888888888621100 001122222234567888999999999976 44333322 223334 676643
No 475
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=26.09 E-value=19 Score=34.06 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=27.1
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHH
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
+.++++++.|+- . ++ ....|-=.+..|..+.+-+|.|+|||-
T Consensus 5 l~i~~l~~~y~~-~-~~----vl~~isl~i~~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 5 LSVENLGFYYQA-E-NF----LFQQLNFDLNKGDILAVLGQNGCGKST 46 (253)
T ss_dssp EEEEEEEEEETT-T-TE----EEEEEEEEEETTCEEEEECCSSSSHHH
T ss_pred EEEeeEEEEeCC-C-Ce----EEEEEEEEECCCCEEEEECCCCCCHHH
Confidence 678888877751 1 11 122222234567888999999999986
No 476
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=25.91 E-value=71 Score=34.31 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=24.4
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 35 ~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
.+.+++.+..|+|||.....-|...+.. ++ ||++.+
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~---G~-rVLlvd 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQ---GK-RVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHC---CC-cEEEEE
Confidence 3578888999999998666555555543 45 555543
No 477
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=25.81 E-value=20 Score=34.32 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=35.3
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
+.++++++.|+-...+ .....|-=.+..|+.+.|-+|.|+|||- |+-+|+-. ..+... +|.+--
T Consensus 17 l~~~~l~~~y~~~~~~----~vl~~vsl~i~~Ge~~~i~G~nGsGKST--Llk~l~Gl-~~p~~G-~I~~~g 80 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNV----QVLQGLTFTLYPGKVTALVGPNGSGKST--VAALLQNL-YQPTGG-KVLLDG 80 (271)
T ss_dssp EEEEEEEECCTTCTTS----CCEEEEEEEECTTCEEEEECSTTSSHHH--HHHHHTTS-SCCSEE-EEEETT
T ss_pred EEEEEEEEEeCCCCCc----eeeEeeEEEECCCCEEEEECCCCCCHHH--HHHHHhcC-CCCCCC-EEEECC
Confidence 5677877776531001 1122222234567889999999999986 44333322 223334 676643
No 478
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=25.70 E-value=1.4e+02 Score=26.75 Aligned_cols=41 Identities=22% Similarity=0.103 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHHHHhcC--CcEEEecCCCChhHHHHHHHHHHHH
Q 006790 18 YPEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALLSLITSYV 60 (631)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~--~~~~iEapTGtGKTla~L~~~l~~~ 60 (631)
-+...+.+..+.+.+..+ ..+++-+++|+|||- |+-.+...
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTT--l~~~l~~~ 53 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTL--LIERTIER 53 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHH--HHHHHHHH
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHH--HHHHHHHH
Confidence 355566666666666443 357788999999996 44444433
No 479
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=25.68 E-value=1.1e+02 Score=29.99 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=23.0
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEec
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~ 75 (631)
..+++-+..|+|||.....-|...+. . ++ ||.+...
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~--~-G~-rVllvD~ 55 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSK--V-RS-SVLLIST 55 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHT--S-SS-CEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH--C-CC-eEEEEEC
Confidence 46778888999999855544444443 2 55 6665543
No 480
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=25.54 E-value=69 Score=28.46 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHHHhc--CCcEEEecCCCChhHHHHHH
Q 006790 17 IYPEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIALLS 54 (631)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~--~~~~~iEapTGtGKTla~L~ 54 (631)
|||.-..++..+.+.+.. ...-+++.++|+|-....+.
T Consensus 10 p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~ 49 (215)
T 4dzr_A 10 PRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIA 49 (215)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHH
T ss_pred CCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHH
Confidence 488888999999998863 45689999999997665554
No 481
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=25.48 E-value=30 Score=32.97 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=26.0
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHH
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTl 50 (631)
+.+.++++.|+ . ++ ....|-=.+..|..+.|-+|.|+|||-
T Consensus 21 l~~~~l~~~y~--~-~~----vl~~vsl~i~~Ge~~~l~G~NGsGKST 61 (267)
T 2zu0_C 21 LSIKDLHVSVE--D-KA----ILRGLSLDVHPGEVHAIMGPNGSGKST 61 (267)
T ss_dssp EEEEEEEEEET--T-EE----EEEEEEEEECTTCEEEEECCTTSSHHH
T ss_pred EEEEeEEEEEC--C-EE----EEEeeEEEEcCCCEEEEECCCCCCHHH
Confidence 56777777663 1 11 122222234567889999999999976
No 482
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=25.39 E-value=20 Score=34.48 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=37.0
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEec
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~ 75 (631)
+.+.|+++.|+-.. + ....|-=.+..|..+.|-+|.|+|||- |+-+++-. ..+... .|.+--.
T Consensus 8 l~i~~ls~~y~~~~--~----~L~~isl~i~~Ge~~~iiGpnGsGKST--Ll~~l~Gl-~~p~~G-~I~~~G~ 70 (275)
T 3gfo_A 8 LKVEELNYNYSDGT--H----ALKGINMNIKRGEVTAILGGNGVGKST--LFQNFNGI-LKPSSG-RILFDNK 70 (275)
T ss_dssp EEEEEEEEECTTSC--E----EEEEEEEEEETTSEEEEECCTTSSHHH--HHHHHTTS-SCCSEE-EEEETTE
T ss_pred EEEEEEEEEECCCC--e----EEEeeEEEEcCCCEEEEECCCCCCHHH--HHHHHHcC-CCCCCe-EEEECCE
Confidence 67888888886432 1 122222234567888999999999976 44333321 223334 6766543
No 483
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=25.07 E-value=69 Score=28.98 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=20.9
Q ss_pred cEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 37 ~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
.++.-.-+|+|||...+--|.++++. ++ ||.+.
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~---G~-rVll~ 36 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAA---GY-RTAGY 36 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CC-CEEEE
Confidence 45556668999998655544444432 56 77763
No 484
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=24.88 E-value=68 Score=30.97 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=19.3
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
+.+.+-+++|+|||-....-|..++.. ++ +|.+..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~---~~-~v~l~~ 133 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGK---GR-RPLLVA 133 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHT---TC-CEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CC-eEEEec
Confidence 345566999999976333322233321 35 566554
No 485
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=24.73 E-value=22 Score=33.90 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=34.3
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
+.+.|+++.|+- ++ ....|-=.+..|+.+.|-+|.|+|||- |+-+++-. ..++.+ +|.|.
T Consensus 7 l~i~~l~~~y~~---~~----vl~~vsl~i~~Ge~~~liG~nGsGKST--Llk~l~Gl-~~p~~G-~i~~~ 66 (262)
T 1b0u_A 7 LHVIDLHKRYGG---HE----VLKGVSLQARAGDVISIIGSSGSGKST--FLRCINFL-EKPSEG-AIIVN 66 (262)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEECTTCEEEEECCTTSSHHH--HHHHHTTS-SCCSEE-EEEET
T ss_pred EEEeeEEEEECC---EE----EEEeeEEEEcCCCEEEEECCCCCCHHH--HHHHHhcC-CCCCCc-EEEEC
Confidence 677888777742 11 122222234567888899999999986 43333321 223334 67664
No 486
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=24.63 E-value=25 Score=31.53 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=12.2
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.+.|-+|.|+|||-
T Consensus 3 ~i~i~G~~GsGKST 16 (204)
T 2if2_A 3 RIGLTGNIGCGKST 16 (204)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 46889999999987
No 487
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=24.25 E-value=54 Score=32.38 Aligned_cols=40 Identities=13% Similarity=0.019 Sum_probs=23.8
Q ss_pred hcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 006790 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T 76 (631)
.++..+.+-+|+|+|||- |+-++.-... +.+. +|.|.+..
T Consensus 53 ~~g~~v~i~G~~GaGKST--Ll~~l~g~~~-~~~g-~v~i~~~d 92 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKST--TIDALGSLLT-AAGH-KVAVLAVD 92 (337)
T ss_dssp CCSEEEEEECCTTSCHHH--HHHHHHHHHH-HTTC-CEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHH--HHHHHHHhhh-hCCC-EEEEEEEc
Confidence 445678899999999976 3333322211 1235 67666544
No 488
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=24.18 E-value=27 Score=33.66 Aligned_cols=14 Identities=29% Similarity=0.216 Sum_probs=12.7
Q ss_pred cEEEecCCCChhHH
Q 006790 37 HCLLEMPTGTGKTI 50 (631)
Q Consensus 37 ~~~iEapTGtGKTl 50 (631)
.+++.+|+|+|||-
T Consensus 4 ~I~l~G~~GsGKST 17 (301)
T 1ltq_A 4 IILTIGCPGSGKST 17 (301)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999987
No 489
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=24.04 E-value=57 Score=30.11 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=17.4
Q ss_pred EEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEE
Q 006790 38 CLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIY 72 (631)
Q Consensus 38 ~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~ 72 (631)
+|.-..||+|||...+.-+-.+++ . +. +|.+
T Consensus 8 ~Itgt~t~vGKT~vt~~L~~~l~~-~--G~-~V~~ 38 (228)
T 3of5_A 8 FIIGTDTEVGKTYISTKLIEVCEH-Q--NI-KSLC 38 (228)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHH-T--TC-CEEE
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH-C--CC-eeEE
Confidence 344445999999965543223322 1 44 6666
No 490
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=23.98 E-value=20 Score=35.11 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=34.6
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEe
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t 74 (631)
+.++|+++.||-. .+ ....|-=.+..|+.+.|-+|+|+|||- |+-+|.- ...+... .|.+--
T Consensus 54 i~~~~vs~~y~~~--~~----vL~~isl~i~~Ge~vaivG~sGsGKST--Ll~ll~g-l~~p~~G-~I~i~G 115 (306)
T 3nh6_A 54 IEFENVHFSYADG--RE----TLQDVSFTVMPGQTLALVGPSGAGKST--ILRLLFR-FYDISSG-CIRIDG 115 (306)
T ss_dssp EEEEEEEEESSTT--CE----EEEEEEEEECTTCEEEEESSSCHHHHH--HHHHHTT-SSCCSEE-EEEETT
T ss_pred EEEEEEEEEcCCC--Cc----eeeeeeEEEcCCCEEEEECCCCchHHH--HHHHHHc-CCCCCCc-EEEECC
Confidence 5677777777522 11 122222233557889999999999976 4333321 1223334 666643
No 491
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=23.66 E-value=23 Score=33.72 Aligned_cols=60 Identities=10% Similarity=0.171 Sum_probs=34.1
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
+.++|+++.|+= ++ ....|-=.+..|+.+.|-+|.|+|||- |+-+++-. ..++.. .|.+-
T Consensus 25 l~i~~l~~~y~~---~~----vL~~vsl~i~~Gei~~liG~NGsGKST--Llk~l~Gl-~~p~~G-~I~~~ 84 (263)
T 2olj_A 25 IDVHQLKKSFGS---LE----VLKGINVHIREGEVVVVIGPSGSGKST--FLRCLNLL-EDFDEG-EIIID 84 (263)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEECTTCEEEEECCTTSSHHH--HHHHHTTS-SCCSEE-EEEET
T ss_pred EEEEeEEEEECC---EE----EEEeeEEEEcCCCEEEEEcCCCCcHHH--HHHHHHcC-CCCCCc-EEEEC
Confidence 677787777641 11 122222234557888899999999987 44333322 223334 67664
No 492
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=23.64 E-value=23 Score=34.13 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=34.7
Q ss_pred eEEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 2 ~~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
.+.++|+++.|+- ++ ....|-=.+..|..+.|-+|.|+|||- |+-+++-. ..++.. .|.+.
T Consensus 21 ~l~~~~l~~~y~~---~~----vL~~isl~i~~Ge~~~liG~NGsGKST--Llk~l~Gl-~~p~~G-~I~~~ 81 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KT----ILKKISWQIAKGDKWILYGLNGAGKTT--LLNILNAY-EPATSG-TVNLF 81 (279)
T ss_dssp EEEEEEEEEEETT---EE----EEEEEEEEEETTCEEEEECCTTSSHHH--HHHHHTTS-SCCSEE-EEEET
T ss_pred eEEEEeEEEEECC---EE----EEEeeeEEEcCCCEEEEECCCCCcHHH--HHHHHhCC-CCCCCe-EEEEC
Confidence 3677888777642 11 122222234567888999999999976 44333321 223334 66664
No 493
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=23.64 E-value=39 Score=34.69 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=21.7
Q ss_pred hcCCcEEEecCCCChhHHHHHHHHHHHHh
Q 006790 33 DAKGHCLLEMPTGTGKTIALLSLITSYVL 61 (631)
Q Consensus 33 ~~~~~~~iEapTGtGKTla~L~~~l~~~~ 61 (631)
..+...+|-+|+|+|||- |+-|+.++.
T Consensus 24 ~~~~~~~i~G~nG~GKst--ll~ai~~~~ 50 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSN--MMDAISFVL 50 (430)
T ss_dssp TTCSEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHHhhh
Confidence 446788999999999998 666777765
No 494
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=23.62 E-value=34 Score=31.77 Aligned_cols=32 Identities=19% Similarity=0.071 Sum_probs=20.3
Q ss_pred EEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEE
Q 006790 38 CLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (631)
Q Consensus 38 ~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~ 73 (631)
..|-+|+|+|||- |+-+++++.... .. .|.+.
T Consensus 30 ~~i~GpnGsGKST--ll~~i~g~~~~~-~G-~i~~~ 61 (227)
T 1qhl_A 30 TTLSGGNGAGKST--TMAAFVTALIPD-LT-LLHFR 61 (227)
T ss_dssp HHHHSCCSHHHHH--HHHHHHHHHSCC-TT-TC---
T ss_pred EEEECCCCCCHHH--HHHHHhcccccC-CC-eEEEC
Confidence 3466999999998 677777776543 33 45443
No 495
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=23.61 E-value=23 Score=33.84 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=34.7
Q ss_pred EEEcCeEeeCCCCCCChHHHHHHHHHHHHHhcCCcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEec
Q 006790 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (631)
Q Consensus 3 ~~i~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~~~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~ 75 (631)
+.+.++++.|+- ++ ....|-=.+..|+.+.|-+|.|+|||- |+-+++-. ..++.. .|.+--.
T Consensus 12 l~~~~l~~~~~~---~~----vL~~vsl~i~~Ge~~~liG~nGsGKST--Ll~~l~Gl-~~p~~G-~I~~~g~ 73 (266)
T 4g1u_C 12 LEASHLHYHVQQ---QA----LINDVSLHIASGEMVAIIGPNGAGKST--LLRLLTGY-LSPSHG-ECHLLGQ 73 (266)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEEETTCEEEEECCTTSCHHH--HHHHHTSS-SCCSSC-EEEETTE
T ss_pred EEEEeEEEEeCC---ee----EEEeeEEEEcCCCEEEEECCCCCcHHH--HHHHHhcC-CCCCCc-EEEECCE
Confidence 566676665532 11 122222234557888999999999987 44333322 223345 6777543
No 496
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=23.38 E-value=22 Score=34.44 Aligned_cols=17 Identities=29% Similarity=0.229 Sum_probs=14.6
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.|+.+.|-+|.|+|||-
T Consensus 63 ~Ge~~~i~G~NGsGKST 79 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTS 79 (290)
T ss_dssp TTCEEEEEESTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46678899999999987
No 497
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=23.20 E-value=33 Score=32.29 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.4
Q ss_pred cCCcEEEecCCCChhHH
Q 006790 34 AKGHCLLEMPTGTGKTI 50 (631)
Q Consensus 34 ~~~~~~iEapTGtGKTl 50 (631)
.+..+.|-+|+|+|||-
T Consensus 26 ~g~~I~I~G~~GsGKST 42 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGT 42 (252)
T ss_dssp TSCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 45678899999999976
No 498
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=23.17 E-value=2.1e+02 Score=32.37 Aligned_cols=96 Identities=9% Similarity=0.058 Sum_probs=61.1
Q ss_pred ccccHHHhhccCEEEEecCCCCCc-cchhhhcCCCCccccccceeecCCceeeEEeeeCCCCcceeeeeccCCCHHHHHH
Q 006790 441 SLAVKPVFDRFQSVVITSGTLSPI-DLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARN 519 (631)
Q Consensus 441 ~~~l~~l~~~~~svIltSaTL~p~-~~f~~~lG~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~s~f~~r~~~~~~~~ 519 (631)
+..++.+|..+..+--|+||+... ..|.+.-|++-+. .|-..|... .+.+ ..=|++..+-..+
T Consensus 368 sIT~QnyFr~Y~kLsGMTGTA~tE~~Ef~~iY~l~Vv~---IPTn~p~~R------------~D~~-d~vy~t~~~K~~A 431 (997)
T 2ipc_A 368 TITYQNFFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVV---VPTNRPVIR------------KDFP-DVVYRTEKGKFYA 431 (997)
T ss_dssp EECHHHHHTTSSEEEEEESSCGGGHHHHHHHHCCCEEE---CCCSSCCCC------------EEEE-EEEESSHHHHHHH
T ss_pred eeeHHHHHHhChHheecCCCchHHHHHHHHHhCCCEEE---cCCCCCccc------------ccCC-CeEEcCHHHHHHH
Confidence 445688999999999999999775 4677777765321 111111000 0000 1113344444567
Q ss_pred HHHHHHHhhcccCCcEEEEecchHHHHHHHHHHh
Q 006790 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN 553 (631)
Q Consensus 520 l~~~i~~~~~~~~gg~LVfF~Sy~~l~~v~~~~~ 553 (631)
+++.|.+.. ..+--+||.++|-+.-+.+...++
T Consensus 432 Iv~eI~~~~-~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 432 VVEEIAEKY-ERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp HHHHHHHHH-HHTCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCCEEEEeCCHHHHHHHHHHHh
Confidence 777777654 356689999999999999988887
No 499
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=22.64 E-value=1.2e+02 Score=26.54 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=31.0
Q ss_pred cCeEeeCCCCCCChHHHHHHHHHHHHHhc----CCcEEEecCCCChhHH
Q 006790 6 EDVTVYFPYDNIYPEQYSYMLELKRALDA----KGHCLLEMPTGTGKTI 50 (631)
Q Consensus 6 ~~~~~~Fpy~~~r~~Q~~~~~~v~~~l~~----~~~~~iEapTGtGKTl 50 (631)
.|..+..|-..+||....+.+.+.+.+.. ...-+++.++|+|-..
T Consensus 11 ~g~~l~~~~~~~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~ 59 (189)
T 3p9n_A 11 GGRRIAVPPRGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALG 59 (189)
T ss_dssp TTCEEECCSCCC---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHH
T ss_pred CCcEecCCCCCCccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHH
Confidence 45666666655688888888888888854 3457999999999644
No 500
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=22.56 E-value=83 Score=31.29 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=23.8
Q ss_pred CcEEEecCCCChhHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 006790 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (631)
Q Consensus 36 ~~~~iEapTGtGKTla~L~~~l~~~~~~~~~~~~vi~~t~T 76 (631)
.++++-+-.|+|||.....-|++++.... ++ ||++....
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~-G~-rVLLvD~D 57 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQP-NK-QFLLISTD 57 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-CEEEEECC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcC-CC-eEEEEECC
Confidence 46677778899999865554555551032 45 66555443
Done!