BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006791
(631 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 268/655 (40%), Positives = 364/655 (55%), Gaps = 74/655 (11%)
Query: 11 NKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGR------ 64
NKTGDIWH+ + L R LY YRV GP G RF+ + VLIDPYAK + G
Sbjct: 64 NKTGDIWHVFVPGL-RPGQLYAYRVYGPYKPELGLRFNPNKVLIDPYAKAINGSVIWNDA 122
Query: 65 ---RHFGDASAKLS---KFLGTYEFESLP----FDWGDN--YKLPNIPEKDLVIYEMNVR 112
GD + L+ + G Y +S+ F+W D K +P KD VIYE++V+
Sbjct: 123 VFGYKIGDQNQDLTYDERDSGEYVPKSVVINPYFEWDDEDFIKGKKVPLKDTVIYEVHVK 182
Query: 113 AFTGDESSGLDPEIRGSYLGLI--QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDH 170
FT L IRG+Y GL Q I +L +LGI VEL+PVF F + F +
Sbjct: 183 GFTKLRLD-LPENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTDKG---- 237
Query: 171 MVNTWGYSTINFFSPMSRYAAGG--GGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 228
+ N WGY INFFSP RY++ G GG + + FK+MV LH AGIEVI+DVVYNHT E
Sbjct: 238 LTNYWGYDPINFFSPECRYSSTGCLGGQVLS---FKKMVNELHNAGIEVIIDVVYNHTAE 294
Query: 229 ADDANPYTTSFRGIDNKVYYMV--DGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVV 286
+ P T SFRGIDN YYM+ D L++ G GNTLN +HP V++++LDSLR+WV
Sbjct: 295 GNHLGP-TLSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVT 353
Query: 287 EYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDC-RGLYLVGK 345
E HVDGFRFDLA+ L R + I A+ +D ILS+ K+IAEPWD +G Y VG
Sbjct: 354 EMHVDGFRFDLAAALARELYSVNMLNTFFI-ALQQDPILSQVKLIAEPWDVGQGGYQVGN 412
Query: 346 FPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAH 405
FP +WAEWNGKYRD +R+F +G+ +A R+ GS D+Y N + P+ SIN++ +H
Sbjct: 413 FPY--QWAEWNGKYRDSIRRFWRGEALPYSEIANRLLGSPDIYLGNNKTPFASINYVTSH 470
Query: 406 DGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLA 465
DGFTL DLVSYN KH +SWNCG EG T+D ++ R +Q +NF +
Sbjct: 471 DGFTLEDLVSYNQKHNEANGFNNQDGMNENYSWNCGAEGPTNDQNVVICREKQKRNFMIT 530
Query: 466 LMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQ 525
L+VSQGTPM+L GDE T+ GNNN++ D I F W L+ +K+ F ++I+F +
Sbjct: 531 LLVSQGTPMILGGDELSRTQRGNNNAFCQDNEITWFDW-NLDERKSKFLEFVKKMIQFYR 589
Query: 526 SRRVFGREDFLN--------INDVTWH--------EDNWDNYDSKFLAFTLHDNNGADI- 568
+ F RE + + DVT++ E W + ++ + F L + +I
Sbjct: 590 AHPAFRRERYFQGKKLFGMPLKDVTFYTLEGREVDEKTWSS-PTQLVIFVLEGSVMDEIN 648
Query: 569 -----------YLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLE--SPDDIVPEG 610
+ NA+ VKV PK +W V+ + L P++ + EG
Sbjct: 649 MYGERIADDSFLIILNANPNNVKVKF----PKGKWELVISSYLREIKPEERIIEG 699
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 313 bits (801), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 206/530 (38%), Positives = 280/530 (52%), Gaps = 40/530 (7%)
Query: 13 TGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGR------RH 66
+GDIWH + D R + YGYRV GP +GHRF+ + +LIDP A+ ++G H
Sbjct: 53 SGDIWHGYLPDA-RPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDGEFKDNPLLH 111
Query: 67 FG-------DASAKLSKFLGTYEFESLPFDWGDNYKLPNIPEKDLVIYEMNVRAFTGDES 119
G D +A K + + +DW D+ P P +IYE +V+ T
Sbjct: 112 AGHNEPDYRDNAAIAPKCVVVVDH----YDWEDDAP-PRTPWGSTIIYEAHVKGLTYLHP 166
Query: 120 SGLDPEIRGSY--LGLIQKIPHLLELGINAVELLPVFEF-DEMEFQRRRNPRDHMVNTWG 176
+ EIRG+Y LG I +L +LGI A+ELLPV +F E QR + N WG
Sbjct: 167 E-IPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMG-----LSNYWG 220
Query: 177 YSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYT 236
Y+ + F+ YA P A EF++ +KALH AGIEVILD+V NH+ E D P
Sbjct: 221 YNPVAMFALHPAYACS---PETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLF 277
Query: 237 TSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
S RGIDN+ YY + G N+ GCGNTLN +HP V++ LR+WV HVDGFRFD
Sbjct: 278 -SLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFD 336
Query: 297 LASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWD-CRGLYLVGKFPNWDRWAEW 355
LA+V+ R + PL AI +LS+ K+IAEPWD G Y VG FP +AEW
Sbjct: 337 LAAVMGRTPEFR--QDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFP--PLFAEW 392
Query: 356 NGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVS 415
N +RD R+F G A R + SSD+++ N R P +IN + AHDGFTL D V
Sbjct: 393 NDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDCVC 452
Query: 416 YNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMM 475
+N+KH +S N G EG + R + L++SQGTPM+
Sbjct: 453 FNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQGTPML 512
Query: 476 LMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQ 525
L GDE+GH+++GNNN+Y D + W Q + + F + +I R+
Sbjct: 513 LAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTA---FTAALIHLRK 559
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 276 bits (706), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 228/693 (32%), Positives = 321/693 (46%), Gaps = 107/693 (15%)
Query: 29 VLYGYRVDGPR-----DWHQGH-------------RFDSSIVLIDPYAKLV--------- 61
V YGYR GP +W +G RF+ + +L+DPYA+ V
Sbjct: 75 VYYGYRAWGPNWPYASNWGKGSQAGFVSDVDANGDRFNPNKLLLDPYAQEVSQDPLNPSN 134
Query: 62 EGRRHFGDASAKLSKFLGTYEFESL---PFDWGDNYKLPNIPEKDLVIYEMNVRAFTGDE 118
+ F ++ + G Y + + P K P +KD VIYE++VR FT +
Sbjct: 135 QNGNVFASGASYRTTDSGIYAPKGVVLVPSTQSTGTK-PTRAQKDDVIYEVHVRGFTEQD 193
Query: 119 SSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYS 178
+S + + RG+Y G K +L LG+ AVE LPV E N D N WGY
Sbjct: 194 TS-IPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPN-SDANQNYWGYM 251
Query: 179 TINFFSPMSRYA--AGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA---DDAN 233
T N+FSP RYA GGP EF+ MV+A H AGI+V +DVVYNHT E ++
Sbjct: 252 TENYFSPDRRYAYNKAAGGPTA---EFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSD 308
Query: 234 PYTT---SFRGIDNKVYY-MVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYH 289
P T S+RG+DN YY + G + G G N + V LI+DSL +W
Sbjct: 309 PTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMG 368
Query: 290 VDGFRFDLASVLCRGT-----DGSPLNAP-------PLIRAIAKDAIL-----------S 326
VDGFRFDLASVL S N P +A + IL S
Sbjct: 369 VDGFRFDLASVLGNSCLNGAYTASAPNCPNGGYNFDAADSNVAINRILREFTVRPAAGGS 428
Query: 327 RCKIIAEPWDCRG-LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATR----I 381
+ AEPW G Y +G FP W+EWNG +RD LR+ + + G I T+
Sbjct: 429 GLDLFAEPWAIGGNSYQLGGFP--QGWSEWNGLFRDSLRQ-AQNELGSMTIYVTQDANDF 485
Query: 382 SGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXX--XXXXXXXXXXXFSWN 439
SGSS+L++ + R P++SINFI HDG TL D+ S N + +SW+
Sbjct: 486 SGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWD 545
Query: 440 CGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAIN 499
G T A + +R F M+S GTP+M GDEY T NNN+Y D++ N
Sbjct: 546 QGMSAGTGAAVDQRRAARTGMAFE---MLSAGTPLMQGGDEYLRTLQCNNNAYNLDSSAN 602
Query: 500 --NFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDN--------WD 549
+ W T +++ Y F +I FR++ + + + +TW++ + W+
Sbjct: 603 WLTYSW---TTDQSNFYTFAQRLIAFRKAHPALRPSSWYSGSQLTWYQPSGAVADSNYWN 659
Query: 550 NYDSKFLAF-----TLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTN--LES 602
N + +A+ +L D+N IY+A+N V +LP PP QW+RV DT +
Sbjct: 660 NTSNYAIAYAINGPSLGDSN--SIYVAYNGWSSSVTFTLPAPPSGTQWYRVTDTCDWNDG 717
Query: 603 PDDIVPEGA----AGTGSTYNLSPYSSILLEAK 631
V G+ G G+TY S +LL +K
Sbjct: 718 ASTFVAPGSETLIGGAGTTYGQCGQSLLLLISK 750
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 140/509 (27%), Positives = 217/509 (42%), Gaps = 92/509 (18%)
Query: 49 SSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDW-GDNYKLPNIPEKDLVIY 107
++ +DPYA+ + S ++ + + P W GD+ + P P D VIY
Sbjct: 387 TTQTAVDPYARAI---------SVNATRGMIVDLKATDPAGWQGDHEQTPANP-VDEVIY 436
Query: 108 EMNVRAFTGDESSGLDPEIRGSYLGLIQK-----------IPHLLELGINAVELLPVFEF 156
E +VR F+ D +SG+ + +G YL + I L ELGI V+L PV EF
Sbjct: 437 EAHVRDFSIDANSGM--KNKGKYLAFTEHGTKGPDHVKTGIDSLKELGITTVQLQPVEEF 494
Query: 157 DEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIE 216
+ ++ P + WGY N+ P YA G + + E K+++++LH I
Sbjct: 495 NSID---ETQPDTY---NWGYDPRNYNVPEGAYATTPEGTARIT-ELKQLIQSLHQQRIG 547
Query: 217 VILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMEL 276
V +DVVYNHT + + F I + YY D G N +G GN HP+ +
Sbjct: 548 VNMDVVYNHTFDV-----MVSDFDKIVPQYYYRTDSNGNYTNGSGXGNEFATEHPMAQKF 602
Query: 277 ILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWD 336
+LDS+ +WV EYHVDGFRFDL ++L + T N + AI +L EPW
Sbjct: 603 VLDSVNYWVNEYHVDGFRFDLMALLGKDTMAKISNE---LHAINPGIVL-----YGEPWT 654
Query: 337 --CRGLYLVGKFPNWDRWAEWNGKYRDDLRK-------------FIKGDPGMKGILATRI 381
GL + G + D++R F GDP ++ +
Sbjct: 655 GGTSGLSSDQLVTKGQQKGLGIGVFNDNIRNGLDGNVFDKTAQGFATGDPNQVDVIKNGV 714
Query: 382 SGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCG 441
GS + P +IN++ +HD TL+D +
Sbjct: 715 IGSIQDF---TSAPSETINYVTSHDNMTLWDKIL-------------------------- 745
Query: 442 FEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNF 501
++ + +A R + + H + SQG P M G+E T+ GN+NSY ++N F
Sbjct: 746 ---ASNPSDTEADRIKMDELAHAVVFTSQGVPFMQGGEEMLRTKGGNDNSYNAGDSVNQF 802
Query: 502 QWGQLETKKNSHYRFFSEVIKFRQSRRVF 530
W + K+ + +FS +I R F
Sbjct: 803 DWSRKAQFKDV-FDYFSSMIHLRNQHPAF 830
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 131/465 (28%), Positives = 202/465 (43%), Gaps = 96/465 (20%)
Query: 103 DLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK-----------IPHLLELGINAVELL 151
D VIYE ++R F+ E+SG+ +G YL L + + ++ ELG+ VELL
Sbjct: 214 DAVIYETHLRDFSIHENSGMIN--KGKYLALTETDTQTANGSSSGLAYVKELGVTHVELL 271
Query: 152 PVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 211
PV +F ++ ++ P D WGY+ ++FF+P YA+ P E K+M+ LH
Sbjct: 272 PVNDFAGVDEEK---PLD--AYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLH 326
Query: 212 GAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHP 271
G+ VILDVV+NH + +++ P+ + G ++ D G+ N G GN +
Sbjct: 327 QHGLRVILDVVFNHVYKRENS-PFEKTVPG----YFFRHDECGKPSNGTGVGNDIASERR 381
Query: 272 VVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKII 331
+ + I D + +W+ EY+VDGFRFDL +L D + AK IL +
Sbjct: 382 MARKFIADCVVYWLEEYNVDGFRFDLLGIL----DIDTVLYMKEKATKAKPGIL----LF 433
Query: 332 AEPWDCRGLYLVGKFPNWDRWAEWN-------GKYRDDLRKFIKGD-------------- 370
E WD L P+ + A N G + D R +KG+
Sbjct: 434 GEGWD-----LATPLPHEQKAALANAPRMPGIGFFNDMFRDAVKGNTFHLKATGFALGNG 488
Query: 371 ----PGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXX 426
M GI + SG L + +P SIN++ +HD T +D +S+
Sbjct: 489 ESAQAVMHGIAGS--SGWKALAPIVP-EPSQSINYVESHDNHTFWDKMSF---------- 535
Query: 427 XXXXXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRY 486
E D RSRQ + L+ +QG P + G E+ T+
Sbjct: 536 --------------ALPQENDSRK----RSRQRLAVAIILL-AQGVPFIHSGQEFFRTKQ 576
Query: 487 GNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVF 530
G NSY +IN W + ET K++ HY +I R++ F
Sbjct: 577 GVENSYQSSDSINQLDWDRRETFKEDVHY--IRRLISLRKAHPAF 619
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/478 (25%), Positives = 206/478 (43%), Gaps = 70/478 (14%)
Query: 42 HQGHRFDSSIVLIDPYAKLVEGRRHFG---DASAKLSK--FLGTYEFESLPFDWGDNYKL 96
+Q R +++ +DPYAK + D + K++K F+ + +G K+
Sbjct: 394 YQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYG---KI 450
Query: 97 PNIPEK-DLVIYEMNVRAFTGDESSGLD-PEIRGSYLGLIQKIPHLLELGINAVELLPVF 154
N + D VIYE +VR FT D + D + G++ I+K+ +L +LG+ ++LLPV
Sbjct: 451 HNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVL 510
Query: 155 EF---DEMEFQRRRN--PRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 209
+ +E++ R + + WGY N+FS Y++ P K EFK ++
Sbjct: 511 SYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINE 570
Query: 210 LHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCN 269
+H G+ ILDVVYNHT + D F ++ Y+ +D G G G L
Sbjct: 571 IHKRGMGAILDVVYNHTAKVD-------LFEDLEPNYYHFMDADGTPRTSFGGGR-LGTT 622
Query: 270 HPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCK 329
H + L++DS+++ V Y VDGFRFD+ + S A RA+ + I+
Sbjct: 623 HHMTKRLLIDSIKYLVDTYKVDGFRFDM---MGDHDAASIEEAYKAARALNPNLIM---- 675
Query: 330 IIAEPWDC----RGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSS 385
+ E W + +W + + + DD+R +K +G A G
Sbjct: 676 -LGEGWRTYAGDENMPTKAADQDWMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKR 734
Query: 386 DLYRVNKR-----------KPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXX 434
D+ + K P I +I AHD TL+D+++ + K
Sbjct: 735 DVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDNLTLFDIIAQSIKK-------------- 780
Query: 435 XFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 492
+ A A R+++ +L ++ +QGTP + G EYG T+ N +Y
Sbjct: 781 ----------DPSKAENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 828
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/478 (25%), Positives = 206/478 (43%), Gaps = 70/478 (14%)
Query: 42 HQGHRFDSSIVLIDPYAKLVEGRRHFG---DASAKLSK--FLGTYEFESLPFDWGDNYKL 96
+Q R +++ +DPYAK + D + K++K F+ + +G K+
Sbjct: 87 YQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYG---KI 143
Query: 97 PNIPEK-DLVIYEMNVRAFTGDESSGLD-PEIRGSYLGLIQKIPHLLELGINAVELLPVF 154
N + D VIYE +VR FT D + D + G++ I+K+ +L +LG+ ++LLPV
Sbjct: 144 HNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVL 203
Query: 155 EF---DEMEFQRRRN--PRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 209
+ +E++ R + + WGY N+FS Y++ P K EFK ++
Sbjct: 204 SYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINE 263
Query: 210 LHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCN 269
+H G+ ILDVVYNHT + D F ++ Y+ +D G G G L
Sbjct: 264 IHKRGMGAILDVVYNHTAKVD-------LFEDLEPNYYHFMDADGTPRTSFGGGR-LGTT 315
Query: 270 HPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCK 329
H + L++DS+++ V Y VDGFRFD+ + S A RA+ + I+
Sbjct: 316 HHMTKRLLIDSIKYLVDTYKVDGFRFDM---MGDHDAASIEEAYKAARALNPNLIM---- 368
Query: 330 IIAEPWDC----RGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSS 385
+ E W + +W + + + DD+R +K +G A G
Sbjct: 369 -LGEGWRTYAGDENMPTKAADQDWMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKR 427
Query: 386 DLYRVNKR-----------KPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXX 434
D+ + K P I +I AHD TL+D+++ + K
Sbjct: 428 DVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDNLTLFDIIAQSIKK-------------- 473
Query: 435 XFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 492
+ A A R+++ +L ++ +QGTP + G EYG T+ N +Y
Sbjct: 474 ----------DPSKAENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 521
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 123/478 (25%), Positives = 206/478 (43%), Gaps = 70/478 (14%)
Query: 42 HQGHRFDSSIVLIDPYAKLVEGRRHFG---DASAKLSK--FLGTYEFESLPFDWGDNYKL 96
+Q R +++ +DPYAK + D + K++K F+ + +G K+
Sbjct: 88 YQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYG---KI 144
Query: 97 PNIPEK-DLVIYEMNVRAFTGDESSGLD-PEIRGSYLGLIQKIPHLLELGINAVELLPVF 154
N + D VIYE +VR FT D + D + G++ I+K+ +L +LG+ ++LLPV
Sbjct: 145 HNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVL 204
Query: 155 EF---DEMEFQRRRN--PRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 209
+ +E++ R + + WGY N+FS Y++ P K EFK ++
Sbjct: 205 SYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINE 264
Query: 210 LHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCN 269
+H G+ ILDVVYNHT + D F ++ Y+ +D G G G L
Sbjct: 265 IHKRGMGAILDVVYNHTAKVD-------LFEDLEPNYYHFMDADGTPRTSFGGGR-LGTT 316
Query: 270 HPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCK 329
H + L++DS+++ V Y VDGFRFD+ + S A RA+ + I+
Sbjct: 317 HHMTKRLLIDSIKYLVDTYKVDGFRFDM---MGDHDAASIEEAYKAARALNPNLIM---- 369
Query: 330 IIAEPWDC----RGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSS 385
+ E W + +W + + + DD+R +K +G A G
Sbjct: 370 -LGEGWRTYAGDENMPTKAADQDWMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKR 428
Query: 386 DLYRVNKR-----------KPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXX 434
D+ + K P I +I AHD TL+D+++ + K
Sbjct: 429 DVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDDLTLFDIIAQSIKK-------------- 474
Query: 435 XFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 492
+ A A R+++ +L ++ +QGTP + G EYG T+ N +Y
Sbjct: 475 ----------DPSKAENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 522
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 121/468 (25%), Positives = 203/468 (43%), Gaps = 77/468 (16%)
Query: 46 RFDSSIVLIDPYAK-LVEGRRHFGDASAKLSK--FLGTYEF--ESLPFDWGDNYKLPNIP 100
R + ++DPYAK L E + + K +K F+ + ++L F N+K
Sbjct: 209 RGKDKVKILDPYAKSLAEWDSNTVNDDIKTAKAAFVNPSQLGPQNLSFAKIANFK----G 264
Query: 101 EKDLVIYEMNVRAFTGDESSGLDPEIR---GSYLGLIQKIPHLLELGINAVELLPVFEF- 156
+D VIYE +VR FT D+S LD +++ G++ +K+ +L +LG+ ++LLPV +
Sbjct: 265 RQDAVIYEAHVRDFTSDQS--LDGKLKNQLGTFAAFSEKLDYLQKLGVTHIQLLPVLSYF 322
Query: 157 --DEMEFQRRR--NPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 212
+EM+ R D+ N WGY ++F+ Y+ P E K+++ +H
Sbjct: 323 YVNEMDKSRSTAYTSSDNNYN-WGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHK 381
Query: 213 AGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPV 272
G+ VILDVVYNHT + T F I+ Y+ ++ G G G L H +
Sbjct: 382 RGMGVILDVVYNHTAK-------TYLFEDIEPNYYHFMNEDGSPRESFGGGR-LGTTHAM 433
Query: 273 VMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIA 332
+++DS+++ E+ VDGFRFD+ G A + AI +I
Sbjct: 434 SRRVLVDSIKYLTSEFKVDGFRFDMM--------GDHDAAAIELAYKEAKAINPNMIMIG 485
Query: 333 EPWDC----RGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLY 388
E W +G + +W + + G + DD+R +K +G A G L
Sbjct: 486 EGWRTFQGDQGKPVKPADQDWMKSTDTVGVFSDDIRNSLKSGFPNEGTPAFITGGPQSLQ 545
Query: 389 RVNKR-----------KPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFS 437
+ K P + +I AHD TL+D+++ S
Sbjct: 546 GIFKNIKAQPGNFEADSPGDVVQYIAAHDNLTLHDVIAK--------------------S 585
Query: 438 WNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTR 485
N + +D R+++ ++ ++ SQGT + G EYG T+
Sbjct: 586 INKDPKVAEEDI------HRRLRLGNVMILTSQGTAFIHSGQEYGRTK 627
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 122/269 (45%), Gaps = 41/269 (15%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGL-------IQKIPHLLELGINAVELLPVF 154
D+ IYE+++R F+ + + +D + RG + ++ + L + G+ V LLP F
Sbjct: 251 SDITIYELHIRDFSAHDGT-VDSDSRGGFRAFAYQASAGMEHLRKLSDAGLTHVHLLPSF 309
Query: 155 EF-------------DEMEFQRRRNPRDHMVNT-----------WGYSTINFFSPMSRYA 190
F DE E D WGY+ + + P YA
Sbjct: 310 HFAGVDDIKSNWKFVDECELATFPPGSDMQQAAVVAIQEEDPYNWGYNPVLWGVPKGSYA 369
Query: 191 AGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMV 250
+ GP + E+++MV+AL+ G+ V++DVVYNH + + ++ I Y
Sbjct: 370 SDPDGPSRI-IEYRQMVQALNRIGLRVVMDVVYNHLDSSGPCG-ISSVLDKIVPGYYVRR 427
Query: 251 DGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPL 310
D GQ+ N A NT + H +V LI+D L +W V Y VDGFRFDL + + T +
Sbjct: 428 DTNGQIENSAAMNNTAS-EHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIMKRT---MM 483
Query: 311 NAPPLIRAIAKDA---ILSRCKIIAEPWD 336
A ++++ DA S+ + E WD
Sbjct: 484 RAKSALQSLTTDAHGVDGSKIYLYGEGWD 512
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 128/326 (39%), Gaps = 80/326 (24%)
Query: 41 WHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLPNIP 100
+H R + DPYA H +++ S+ + + P W D +P+
Sbjct: 364 YHPQSRKVEQYEVTDPYA-------HSLSTNSEYSQVVDLNDSALKPEGW-DGLTMPHAQ 415
Query: 101 EKD-----LVIYEMNVRAFTGDESSGLDPEIRGSYLGL-------IQKIPHLLELGINAV 148
+ + I+E ++R + + + + E+RG YL L +Q + L G+ +
Sbjct: 416 KTKADLAKMTIHESHIRDLSAWDQT-VPAELRGKYLALTAQESNMVQHLKQLSASGVTHI 474
Query: 149 ELLPVFEFD------------EMEFQR--------------------------------- 163
ELLPVF+ + F R
Sbjct: 475 ELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQN 534
Query: 164 --RRNPRDHMVNT---------WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL-H 211
+ NP+ +NT WGY ++ P YA G + EF+ M++A+
Sbjct: 535 DSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIK-EFRTMIQAIKQ 593
Query: 212 GAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHP 271
G+ VI+DVVYNHTN A + T+ I Y ++ T + A C + H
Sbjct: 594 DLGMNVIMDVVYNHTNAAGPTD-RTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHR 652
Query: 272 VVMELILDSLRHWVVEYHVDGFRFDL 297
+ +LI DSL W +Y +DGFRFDL
Sbjct: 653 MFAKLIADSLAVWTTDYKIDGFRFDL 678
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 128/326 (39%), Gaps = 80/326 (24%)
Query: 41 WHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLPNIP 100
+H R + DPYA H +++ S+ + + P W D +P+
Sbjct: 203 YHPQSRKVEQYEVTDPYA-------HSLSTNSEYSQVVDLNDSALKPEGW-DGLTMPHAQ 254
Query: 101 EKD-----LVIYEMNVRAFTGDESSGLDPEIRGSYLGL-------IQKIPHLLELGINAV 148
+ + I+E ++R + + + + E+RG YL L +Q + L G+ +
Sbjct: 255 KTKADLAKMTIHESHIRDLSAWDQT-VPAELRGKYLALTAQESNMVQHLKQLSASGVTHI 313
Query: 149 ELLPVFEFD------------EMEFQR--------------------------------- 163
ELLPVF+ + F R
Sbjct: 314 ELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQN 373
Query: 164 --RRNPRDHMVNT---------WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL-H 211
+ NP+ +NT WGY ++ P YA G + EF+ M++A+
Sbjct: 374 DSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIK-EFRTMIQAIKQ 432
Query: 212 GAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHP 271
G+ VI+DVVYNHTN A + T+ I Y ++ T + A C + H
Sbjct: 433 DLGMNVIMDVVYNHTNAAGPTD-RTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHR 491
Query: 272 VVMELILDSLRHWVVEYHVDGFRFDL 297
+ +LI DSL W +Y +DGFRFDL
Sbjct: 492 MFAKLIADSLAVWTTDYKIDGFRFDL 517
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 128/326 (39%), Gaps = 80/326 (24%)
Query: 41 WHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLPNIP 100
+H R + DPYA H +++ S+ + + P W D +P+
Sbjct: 207 YHPQSRKVEQYEVTDPYA-------HSLSTNSEYSQVVDLNDSALKPEGW-DGLTMPHAQ 258
Query: 101 EKD-----LVIYEMNVRAFTGDESSGLDPEIRGSYLGL-------IQKIPHLLELGINAV 148
+ + I+E ++R + + + + E+RG YL L +Q + L G+ +
Sbjct: 259 KTKADLAKMTIHESHIRDLSAWDQT-VPAELRGKYLALTAQESNMVQHLKQLSASGVTHI 317
Query: 149 ELLPVFEFD------------EMEFQR--------------------------------- 163
ELLPVF+ + F R
Sbjct: 318 ELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQN 377
Query: 164 --RRNPRDHMVNT---------WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL-H 211
+ NP+ +NT WGY ++ P YA G + EF+ M++A+
Sbjct: 378 DSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIK-EFRTMIQAIKQ 436
Query: 212 GAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHP 271
G+ VI+DVVYNHTN A + T+ I Y ++ T + A C + H
Sbjct: 437 DLGMNVIMDVVYNHTNAAGPTD-RTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHR 495
Query: 272 VVMELILDSLRHWVVEYHVDGFRFDL 297
+ +LI DSL W +Y +DGFRFDL
Sbjct: 496 MFAKLIADSLAVWTTDYKIDGFRFDL 521
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 128/326 (39%), Gaps = 80/326 (24%)
Query: 41 WHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLPNIP 100
+H R + DPYA H +++ S+ + + P W D +P+
Sbjct: 201 YHPQSRKVEQYEVTDPYA-------HSLSTNSEYSQVVDLNDSALKPEGW-DGLTMPHAQ 252
Query: 101 EKD-----LVIYEMNVRAFTGDESSGLDPEIRGSYLGL-------IQKIPHLLELGINAV 148
+ + I+E ++R + + + + E+RG YL L +Q + L G+ +
Sbjct: 253 KTKADLAKMTIHESHIRDLSAWDQT-VPAELRGKYLALTAQESNMVQHLKQLSASGVTHI 311
Query: 149 ELLPVFEFD------------EMEFQR--------------------------------- 163
ELLPVF+ + F R
Sbjct: 312 ELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQN 371
Query: 164 --RRNPRDHMVNT---------WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL-H 211
+ NP+ +NT WGY ++ P YA G + EF+ M++A+
Sbjct: 372 DSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIK-EFRTMIQAIKQ 430
Query: 212 GAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHP 271
G+ VI+DVVYNHTN A + T+ I Y ++ T + A C + H
Sbjct: 431 DLGMNVIMDVVYNHTNAAGPTD-RTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHR 489
Query: 272 VVMELILDSLRHWVVEYHVDGFRFDL 297
+ +LI DSL W +Y +DGFRFDL
Sbjct: 490 MFAKLIADSLAVWTTDYKIDGFRFDL 515
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 53/215 (24%)
Query: 99 IPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDE 158
+ ++DL+IYE++V FT PE G++ G+I+K+ +L +LGI A+E++P+ +F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFP- 145
Query: 159 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVI 218
RD WGY + ++ + Y GGP F+++V H G+ VI
Sbjct: 146 -------GKRD-----WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVI 185
Query: 219 LDVVYNHT----NEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 274
LDVVYNH N PY + + + D + V
Sbjct: 186 LDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFD---------------DAESDEVR 230
Query: 275 ELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 309
+ IL+++ +W+ EY+VDGFR D + D SP
Sbjct: 231 KFILENVEYWIKEYNVDGFRLDAVHAII---DTSP 262
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 53/215 (24%)
Query: 99 IPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDE 158
+ ++DL+IYE++V FT PE G++ G+I+K+ +L +LGI A+E++P+ +F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFP- 145
Query: 159 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVI 218
RD WGY + ++ + Y GGP F+++V H G+ VI
Sbjct: 146 -------GKRD-----WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVI 185
Query: 219 LDVVYNHT----NEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 274
LDVVYNH N PY + + + D + V
Sbjct: 186 LDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFD---------------DAESDEVR 230
Query: 275 ELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 309
+ IL+++ +W+ EY+VDGFR D + D SP
Sbjct: 231 KFILENVEYWIKEYNVDGFRLDAVHAII---DTSP 262
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 53/215 (24%)
Query: 99 IPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDE 158
+ ++DL+IYE++V FT PE G++ G+I+K+ +L +LGI A+E++P+ +F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFP- 145
Query: 159 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVI 218
RD WGY + ++ + Y GGP F+++V H G+ VI
Sbjct: 146 -------GKRD-----WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVI 185
Query: 219 LDVVYNHT----NEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 274
LDVVYNH N PY + + + D + V
Sbjct: 186 LDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFD---------------DAESDEVR 230
Query: 275 ELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 309
+ IL+++ +W+ EY+VDGFR D + D SP
Sbjct: 231 KFILENVEYWIKEYNVDGFRLDAVHAII---DTSP 262
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 53/215 (24%)
Query: 99 IPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDE 158
+ ++DL+IYE++V FT PE G++ G+I+K+ +L +LGI A+E++P+ +F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFP- 145
Query: 159 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVI 218
RD WGY + ++ + Y GGP F+++V H G+ VI
Sbjct: 146 -------GKRD-----WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVI 185
Query: 219 LDVVYNHT----NEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 274
LDVVYNH N PY + + + D + V
Sbjct: 186 LDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFD---------------DAESDEVR 230
Query: 275 ELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 309
+ IL+++ +W+ EY+VDGFR + + D SP
Sbjct: 231 KFILENVEYWIKEYNVDGFRLEAVHAII---DTSP 262
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 53/215 (24%)
Query: 99 IPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDE 158
+ ++DL+IYE++V FT PE G++ G+I+K+ +L +LGI A+E++P+ +F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFP- 145
Query: 159 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVI 218
RD WGY + ++ + Y GGP F+++V H G+ VI
Sbjct: 146 -------GKRD-----WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVI 185
Query: 219 LDVVYNHT----NEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 274
LDVVYNH N PY + + + D + V
Sbjct: 186 LDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFD---------------DAESDEVR 230
Query: 275 ELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 309
+ IL+++ +W+ EY+VDGFR + D SP
Sbjct: 231 KFILENVEYWIKEYNVDGFRLSAVHAII---DTSP 262
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 85/195 (43%), Gaps = 44/195 (22%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
+ V+YEM+ FT PE G++ I K+P+L ELG+ +E++PV +F
Sbjct: 135 EQAVVYEMHTGTFT--------PE--GTFRAAIAKLPYLAELGVTVIEVMPVAQFGGE-- 182
Query: 162 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 221
WGY + ++P S Y G P +FK + A HG G+ V+LD+
Sbjct: 183 -----------RGWGYDGVLLYAPHSAY----GTPD----DFKAFIDAAHGYGLSVVLDI 223
Query: 222 VYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSL 281
V NH F N + + GN + + V I+++
Sbjct: 224 VLNH-------------FGPEGNYLPLLAPAFFHKERMTPWGNGIAYDVDAVRRYIIEAP 270
Query: 282 RHWVVEYHVDGFRFD 296
+W+ EYH+DG RFD
Sbjct: 271 LYWLTEYHLDGLRFD 285
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 108/248 (43%), Gaps = 56/248 (22%)
Query: 55 DPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLPNIPEKDLVIYEMNVRAF 114
DPYA+ + H A++ F GT FDW D I D V YE++V F
Sbjct: 90 DPYARFLPDGVH---GEAEVVDF-GT-------FDWTDA-DWHGIKLADCVFYEVHVGTF 137
Query: 115 TGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT 174
T PE G+Y +K+P+L ELG+ A++++P+ FD QR
Sbjct: 138 T--------PE--GTYRAAAEKLPYLKELGVTAIQVMPLAAFDG---QR----------G 174
Query: 175 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 234
WGY F++P + Y G P + +V A H G+ V LDVVYNH + +
Sbjct: 175 WGYDGAAFYAPYAPY----GRPE----DLMALVDAAHRLGLGVFLDVVYNHFGPSGN--- 223
Query: 235 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 294
Y +S+ Y D + + G G L+ P + + + R W+ +YH DG R
Sbjct: 224 YLSSY-----APSYFTD---RFSSAWGMG--LDYAEPHMRRYVTGNARMWLRDYHFDGLR 273
Query: 295 FDLASVLC 302
D +
Sbjct: 274 LDATPYMT 281
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 101/242 (41%), Gaps = 56/242 (23%)
Query: 55 DPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLPNIPEKDLVIYEMNVRAF 114
DPYA+ + H A++ F GT FDW D I D V YE++V F
Sbjct: 90 DPYARFLPDGVH---GEAEVVDF-GT-------FDWTDA-DWHGIKLADCVFYEVHVGTF 137
Query: 115 TGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT 174
T PE G+Y +K+P+L ELG+ A+++ P+ FD
Sbjct: 138 T--------PE--GTYRAAAEKLPYLKELGVTAIQVXPLAAFDGQ-------------RG 174
Query: 175 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 234
WGY F++P + Y G P + +V A H G+ V LDVVYNH + +
Sbjct: 175 WGYDGAAFYAPYAPY----GRPE----DLXALVDAAHRLGLGVFLDVVYNHFGPSGN--- 223
Query: 235 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 294
Y +S+ Y D + G L+ P + + R W+ +YH DG R
Sbjct: 224 YLSSY-----APSYFTD-----RFSSAWGXGLDYAEPHXRRYVTGNARXWLRDYHFDGLR 273
Query: 295 FD 296
D
Sbjct: 274 LD 275
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 51/218 (23%)
Query: 104 LVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQR 163
++ Y++ VR+F G+ G + GL + +L ELGI+ V L+PVF
Sbjct: 1 MIGYQIYVRSFRDGNLDGV-----GDFRGLKNAVSYLKELGIDFVWLMPVFS-------- 47
Query: 164 RRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVY 223
++ GY ++F+S + Y + EFKEM++A H +GI+V+LD+
Sbjct: 48 -------SISFHGYDVVDFYSFKAEYGS--------EREFKEMIEAFHDSGIKVVLDLPI 92
Query: 224 NHT-------NEADDANPYTTSFRGIDNKV---------------YYMVDGTGQLLNYAG 261
+HT +A +P+ + NK + + DG +
Sbjct: 93 HHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGP 152
Query: 262 CGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 299
LN ++P V + + + H +++ VDGFRFD A
Sbjct: 153 FSPDLNYDNPQVFDEMKRLVLH-LLDMGVDGFRFDAAK 189
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 58/227 (25%)
Query: 101 EKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHL--------LELGINAVELLP 152
EK YE+ VR+F + G+ G G+I+K+ +L +LG+N + L+P
Sbjct: 2 EKHGTYYEIFVRSFYDSDGDGI-----GDLKGIIEKLDYLNDGDPETIADLGVNGIWLMP 56
Query: 153 VFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 212
+F ++P H GY +++ Y G L+ +F ++V+A H
Sbjct: 57 IF----------KSPSYH-----GYDVTDYYKINPDY-----GTLE---DFHKLVEAAHQ 93
Query: 213 AGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGT-----------GQLLNYAG 261
GI+VI+D+ NHT+E + + + + YY+ G G++ +Y+
Sbjct: 94 RGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSP 153
Query: 262 CGN----------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLA 298
G LN N+P V E ++ ++W+ + VDGFR D A
Sbjct: 154 TGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGA 199
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 38/185 (20%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G G+I + HL +LG+NAV P+F+ Y T ++F
Sbjct: 169 GDLQGVIDHLDHLSKLGVNAVYFTPLFK---------------ATTNHKYDTEDYFQIDP 213
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 247
++ K++V H GI V+LD V+NH+ P+ + + Y
Sbjct: 214 QFGDKD--------TLKKLVDLCHERGIRVLLDAVFNHSGRT--FPPFVDVLKNGEKSKY 263
Query: 248 Y-----------MVDG--TGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 294
+VDG T + LN HP V E +L + +W+ E +DG+R
Sbjct: 264 KDWFHIRSLPLEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWR 323
Query: 295 FDLAS 299
D+A+
Sbjct: 324 LDVAN 328
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 48/213 (22%)
Query: 94 YKLPNIPEKDL-VIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLP 152
+K P P+ D IYE +V SG +PE+ +P + N V+L+
Sbjct: 170 FKHPRPPKPDAPRIYEAHVGM------SGEEPEVSTYREFADNVLPRIRANNYNTVQLMA 223
Query: 153 VFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 212
+ E ++GY NFF+ SR G P + K +V H
Sbjct: 224 IMEHS-------------YYASFGYHVTNFFAVSSR----SGTPE----DLKYLVDKAHS 262
Query: 213 AGIEVILDVVYNH-TNEADDA--------NPYTTSFRGIDNKVYYMVDGTGQLLNYAGCG 263
G+ V++DVV++H +N D N + + F D + + D +L NYA
Sbjct: 263 LGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDS--RLFNYANWE 320
Query: 264 NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
V+ +L +LR+W+ E+ DGFRFD
Sbjct: 321 ---------VLRFLLSNLRYWMDEFMFDGFRFD 344
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 48/213 (22%)
Query: 94 YKLPNIPEKDL-VIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLP 152
+K P P+ D IYE +V SG +PE+ +P + N V+L+
Sbjct: 170 FKHPRPPKPDAPRIYEAHVGM------SGEEPEVSTYREFADNVLPRIRANNYNTVQLMA 223
Query: 153 VFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 212
+ E ++GY NFF+ SR G P + K +V H
Sbjct: 224 IMEHS-------------YYASFGYHVTNFFAVSSR----SGTPE----DLKYLVDKAHS 262
Query: 213 AGIEVILDVVYNH-TNEADDA--------NPYTTSFRGIDNKVYYMVDGTGQLLNYAGCG 263
G+ V++DVV++H +N D N + + F D + + D +L NYA
Sbjct: 263 LGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDS--RLFNYANWE 320
Query: 264 NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
V+ +L +LR+W+ E+ DGFRFD
Sbjct: 321 ---------VLRFLLSNLRYWMDEFMFDGFRFD 344
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 130/303 (42%), Gaps = 61/303 (20%)
Query: 3 ELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVE 62
E P+ RV +W + D P + LY +RV G G D + DP+A
Sbjct: 163 EAPM--RVLGPSGVWELFWPDFP-CDGLYKFRVHGA----DGVVTDRA----DPFA---- 207
Query: 63 GRRHFG-DASAKLSKFLGTYEFESLPFDWGDNYKLPNIPEKDLVIYEMNVRAFTGDESSG 121
FG + + + + + ++ DW L N + + YE+++ G G
Sbjct: 208 ----FGTEVPPQTASRVTSSDYTWGDDDWMAGRALRNPVNEAMSTYEVHL----GSWRPG 259
Query: 122 LDPEIRGSYLGLIQKIP-HLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTI 180
L SY L +++ ++++ G VELLPV E +WGY
Sbjct: 260 L------SYRQLARELTDYIVDQGFTHVELLPVAEHP-------------FAGSWGYQVT 300
Query: 181 NFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFR 240
++++P SR+ G P +F+ +V ALH AGI VI+D V H + A F
Sbjct: 301 SYYAPTSRF----GTPD----DFRALVDALHQAGIGVIVDWVPAHFPKDAWA---LGRFD 349
Query: 241 GIDNKVYYMVD-GTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD-LA 298
G +Y D G+ L++ + P V ++ + +W+ E+H+DG R D +A
Sbjct: 350 G--TPLYEHSDPKRGEQLDWGTY--VFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVA 405
Query: 299 SVL 301
S+L
Sbjct: 406 SML 408
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 45/186 (24%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G+ G+ +K+P+LL+LG+ A+ L PV F N R H V+ + I
Sbjct: 47 GTLWGVAEKLPYLLDLGVEAIYLNPV-------FASTANHRYHTVDYFQVDPI------- 92
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTT 237
L + + +++ H G+ VILD V+NHT E + +PY
Sbjct: 93 ---------LGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLXENGEQSPYRD 143
Query: 238 SF--RGIDNKVYYMVDGTGQLLNYAGCGN----TLNCNHPVVMELILDSLRHWVVEYHVD 291
+ +G K Y T A GN L P V E +L HW + + VD
Sbjct: 144 WYHVKGFPLKAY-----TAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHW-IRFGVD 197
Query: 292 GFRFDL 297
G+R D+
Sbjct: 198 GWRLDV 203
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 35/183 (19%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G G+I + +L +LGI + L P+F R P +H +T Y I+
Sbjct: 173 GDLQGIIDHLDYLADLGITGIYLTPIF----------RAPSNHKYDTADYFEID------ 216
Query: 188 RYAAGGGGPLKASWE-FKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYT 236
P E K +VK H GI V+LD V+NH + A+ Y
Sbjct: 217 --------PHFGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYK 268
Query: 237 TSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
F + + + LN HP V +LD +W+ E+ +DG+R D
Sbjct: 269 DWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLD 328
Query: 297 LAS 299
+A+
Sbjct: 329 VAN 331
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 35/183 (19%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G G+I + +L +LGI + L P+F R P +H +T Y I+
Sbjct: 173 GDLQGIIDHLDYLADLGITGIYLTPIF----------RAPSNHKYDTADYFEID------ 216
Query: 188 RYAAGGGGPLKASWE-FKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYT 236
P E K +VK H GI V+LD V+NH + A+ Y
Sbjct: 217 --------PHFGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYK 268
Query: 237 TSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
F + + + LN HP V +LD +W+ E+ +DG+R D
Sbjct: 269 DWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLD 328
Query: 297 LAS 299
+A+
Sbjct: 329 VAN 331
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 33/182 (18%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G G+I + +L++LGI + L P+F R+P +H Y T ++F
Sbjct: 173 GDLQGIIDHLDYLVDLGITGIYLTPIF----------RSPSNH-----KYDTADYFEVDP 217
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTT 237
+ G LK ++ H GI V+LD V+NH + +++ Y
Sbjct: 218 HF--GDKETLKT------LIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKD 269
Query: 238 SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 297
F + + + LN +P V +LD +W+ E+ +DG+R D+
Sbjct: 270 WFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDV 329
Query: 298 AS 299
A+
Sbjct: 330 AN 331
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 33/182 (18%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G G+I + +L++LGI + L P+F R+P +H Y T ++F
Sbjct: 173 GDLQGIIDHLDYLVDLGITGIYLTPIF----------RSPSNH-----KYDTADYFEVDP 217
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTT 237
+ G LK ++ H GI V+LD V+NH + +++ Y
Sbjct: 218 HF--GDKETLKT------LIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKD 269
Query: 238 SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 297
F + + + LN +P V +LD +W+ E+ +DG+R D+
Sbjct: 270 WFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDV 329
Query: 298 AS 299
A+
Sbjct: 330 AN 331
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 126/329 (38%), Gaps = 85/329 (25%)
Query: 23 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 65
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 66 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 115
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 116 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 164
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 165 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 224
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 225 HTNEADDANPYTTSFRGIDNKVY--------YMVDGTGQLLNYAGCG------NTLNCNH 270
H D + + + Y + V T + NY L +
Sbjct: 244 HA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR-TNYETAAVQVPAMPKLRTEN 300
Query: 271 PVVMELILDSLRHWVVEYHVDGFRFDLAS 299
P V E + D R W +E +DG+R D+A+
Sbjct: 301 PEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 102/236 (43%), Gaps = 59/236 (25%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K+ V+Y++ R+F G+ G G+I K+ +L ELGI+ + L PV+E
Sbjct: 7 KESVVYQIYPRSFMDSNGDGI-----GDLRGIISKLDYLKELGIDVIWLSPVYE------ 55
Query: 162 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 221
+P D GY ++ M+ + W+ E++ +H +++++D+
Sbjct: 56 ----SPNDDN----GYDISDYCKIMNEFGT------MEDWD--ELLHEMHERNMKLMMDL 99
Query: 222 VYNHTNEADDANPYTTSFRGIDNKV--YYM--------------VDGTGQLLNYAGCGNT 265
V NHT +D+ N + S + DNK YY+ +G Y +
Sbjct: 100 VVNHT--SDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDE 157
Query: 266 ------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 309
LN ++ V + + + ++ W +E +DGFR D+ + + + +G P
Sbjct: 158 YYLHLFSKKQPDLNWDNEKVRQDVYEMMKFW-LEKGIDGFRMDVINFISK-EEGLP 211
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 126/329 (38%), Gaps = 85/329 (25%)
Query: 23 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 65
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 66 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 115
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 116 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 164
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 165 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 224
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 225 HTNEADDANPYTTSFRGIDNKVY--------YMVDGTGQLLNYAGCG------NTLNCNH 270
H D + + + Y + V T + NY L +
Sbjct: 244 HA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR-TNYETFAVQVPAMPKLRTEN 300
Query: 271 PVVMELILDSLRHWVVEYHVDGFRFDLAS 299
P V E + D R W +E +DG+R D+A+
Sbjct: 301 PEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 126/329 (38%), Gaps = 85/329 (25%)
Query: 23 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 65
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 66 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 115
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 116 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 164
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 165 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 224
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 225 HTNEADDANPYTTSFRGIDNKVY--------YMVDGTGQLLNYAGCG------NTLNCNH 270
H D + + + Y + V T + NY L +
Sbjct: 244 HA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR-TNYETFAVQVPAMPKLRTEN 300
Query: 271 PVVMELILDSLRHWVVEYHVDGFRFDLAS 299
P V E + D R W +E +DG+R D+A+
Sbjct: 301 PEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 126/329 (38%), Gaps = 85/329 (25%)
Query: 23 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 65
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 66 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 115
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 116 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 164
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 165 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 224
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 225 HTNEADDANPYTTSFRGIDNKVY--------YMVDGTGQLLNYAGCG------NTLNCNH 270
H D + + + Y + V T + NY L +
Sbjct: 244 HA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR-TNYETFAVQVPAMPKLRTEN 300
Query: 271 PVVMELILDSLRHWVVEYHVDGFRFDLAS 299
P V E + D R W +E +DG+R D+A+
Sbjct: 301 PEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 126/329 (38%), Gaps = 85/329 (25%)
Query: 23 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 65
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 66 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 115
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 116 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 164
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 165 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 224
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 225 HTNEADDANPYTTSFRGIDNKVY--------YMVDGTGQLLNYAGCG------NTLNCNH 270
H D + + + Y + V T + NY L +
Sbjct: 244 HA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR-TNYETYAVQVPAMPKLRTEN 300
Query: 271 PVVMELILDSLRHWVVEYHVDGFRFDLAS 299
P V E + D R W +E +DG+R D+A+
Sbjct: 301 PEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 126/329 (38%), Gaps = 85/329 (25%)
Query: 23 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 65
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 66 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 115
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 116 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 164
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 165 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 224
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 225 HTNEADDANPYTTSFRGIDNKVY--------YMVDGTGQLLNYAGCG------NTLNCNH 270
H D + + + Y + V T + NY L +
Sbjct: 244 HA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR-TNYETFAVQVPAMPKLRTEN 300
Query: 271 PVVMELILDSLRHWVVEYHVDGFRFDLAS 299
P V E + D R W +E +DG+R D+A+
Sbjct: 301 PEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 126/329 (38%), Gaps = 85/329 (25%)
Query: 23 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 65
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 66 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 115
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 116 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 164
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 165 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 224
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 225 HTNEADDANPYTTSFRGIDNKVY--------YMVDGTGQLLNYAGCG------NTLNCNH 270
H D + + + Y + V T + NY L +
Sbjct: 244 HA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR-TNYETFAVQVPAMPKLRTEN 300
Query: 271 PVVMELILDSLRHWVVEYHVDGFRFDLAS 299
P V E + D R W +E +DG+R D+A+
Sbjct: 301 PEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 27/127 (21%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K+ V Y++ R+F G+ G G+I+K+ +L+ELG++ V + P++
Sbjct: 7 KEGVAYQIYPRSFMDANGDGI-----GDLRGIIEKLDYLVELGVDIVWICPIY------- 54
Query: 162 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 221
R+P GY ++++ M + +F E++ H G++VILD+
Sbjct: 55 ---RSPNADN----GYDISDYYAIMDEFGTMD--------DFDELLAQAHRRGLKVILDL 99
Query: 222 VYNHTNE 228
V NHT++
Sbjct: 100 VINHTSD 106
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 54/228 (23%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K+ V Y++ R+F G+ G G+I+K+ +L LGI+A+ + P ++ +
Sbjct: 21 KEAVFYQIYPRSFKDTNDDGI-----GDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDN 75
Query: 162 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 221
GY N+ M Y G ++ +F +V + + +++DV
Sbjct: 76 --------------GYDISNYRQIMKEY-----GTME---DFDSLVAEMKKRNMRLMIDV 113
Query: 222 VYNHTNE---------ADDANPYTTSF---RGIDNK------------VYYMVDGTGQ-- 255
V NHT++ +D NPY + G DN+ + +GQ
Sbjct: 114 VINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYY 173
Query: 256 LLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 303
L +A LN ++P V E + LR W ++ V G RFD + +
Sbjct: 174 LHYFARQQPDLNWDNPKVREDLYAMLRFW-LDKGVSGMRFDTVATYSK 220
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 37/183 (20%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G G+++ + ++ LGINA+ P+F+ + +H +T Y ++ PM
Sbjct: 53 GDLWGIMEDLDYIQNLGINAIYFTPIFQ----------SASNHRYHTHDYYQVD---PM- 98
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN-------EADDANPYTTSFR 240
L + FKE++ A H I+V+LD V+NH++ + + P++
Sbjct: 99 ---------LGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVN 149
Query: 241 GIDNKVYYMVDGTGQL-LNYAG-CGN----TLNCNHPVVMELILDSLRHWVVEYHVDGFR 294
+ + + G+ NY G GN N ++P V E I++ +W +++ +DG+R
Sbjct: 150 WFKIEGWPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYW-LKFGIDGWR 208
Query: 295 FDL 297
D+
Sbjct: 209 LDV 211
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 126/329 (38%), Gaps = 85/329 (25%)
Query: 23 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 65
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 66 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 115
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 116 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 164
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 165 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 224
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 225 HTNEADDANPYTTSFRGIDNKVY--------YMVDGTGQLLNYAGCG------NTLNCNH 270
H D + + + Y + V T + NY L +
Sbjct: 244 HA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR-TNYETFAVQVPAMPKLRTEN 300
Query: 271 PVVMELILDSLRHWVVEYHVDGFRFDLAS 299
P V E + D R W +E +DG+R ++A+
Sbjct: 301 PEVKEYLFDVARFW-MEQGIDGWRLNVAN 328
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 126/329 (38%), Gaps = 85/329 (25%)
Query: 23 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 65
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 66 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 115
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 116 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 164
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 165 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 224
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 225 HTNEADDANPYTTSFRGIDNKVY--------YMVDGTGQLLNYAGCG------NTLNCNH 270
H D + + + Y + V T + NY L +
Sbjct: 244 HA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR-TNYETFAVQVPAMPKLRTEN 300
Query: 271 PVVMELILDSLRHWVVEYHVDGFRFDLAS 299
P V E + D R W +E +DG+R ++A+
Sbjct: 301 PEVKEYLFDVARFW-MEQGIDGWRLNVAN 328
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 95/252 (37%), Gaps = 70/252 (27%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G +G+ +KI HL+ LGINA+ L P+F + GY +++F
Sbjct: 236 GDLIGIKEKIDHLVNLGINAIYLTPIFS---------------SLTYHGYDIVDYFHVAR 280
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTT 237
R L F +++ L I+VILD V++HT+ + + +
Sbjct: 281 R--------LGGDRAFVDLLSELKRFDIKVILDGVFHHTSFFHPYFQDVVRKGENSSFKN 332
Query: 238 SFRGIDNKV------------------YYMVDGTGQLLNYAGCGNT-----LNCNHPVVM 274
+R I V Y + G NY + LN ++P V
Sbjct: 333 FYRIIKFPVVSKEFLQILHSKSSWEEKYKKIKSLG--WNYESFFSVWIMPRLNHDNPKVR 390
Query: 275 ELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEP 334
E I + + W + VDGFR D+A PP + ++A+ +I E
Sbjct: 391 EFIKNVILFWTNK-GVDGFRMDVAH-----------GVPPEVWKEVREALPKEKYLIGEV 438
Query: 335 WDCRGLYLVGKF 346
D L+L KF
Sbjct: 439 MDDARLWLFDKF 450
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K V Y++ R+F G+ G + GL +K+ +L LGI+A+ +
Sbjct: 8 KSAVFYQVYPRSFKDTNGDGI-----GDFKGLTEKLDYLKGLGIDAIWI----------- 51
Query: 162 QRRRNPRDHMVNT-WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILD 220
NP NT GY ++ M Y G ++ +F ++ L G+ +++D
Sbjct: 52 ----NPHYASPNTDNGYDISDYREVMKEY-----GTME---DFDRLMAELKKRGMRLMVD 99
Query: 221 VVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG---------------TGQ- 255
VV NH+++ A NPY + D K + + TGQ
Sbjct: 100 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQY 159
Query: 256 LLNYAGCGNT-LNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 314
L+Y G LN + P + E + LR W ++ V G RFD + + T G P P
Sbjct: 160 YLHYLGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPE 217
Query: 315 LIRAIAK 321
++ A+
Sbjct: 218 QMKNFAE 224
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 42/177 (23%)
Query: 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGG 194
Q +P+ +G +ELLP+ E +P D +WGY ++P R+
Sbjct: 160 QLVPYAKWMGFTHLELLPINE----------HPFD---GSWGYQPTGLYAPTRRFGTRD- 205
Query: 195 GPLKASWEFKEMVKALHGAGIEVILDVVYNH-------TNEADDANPYTTSFRGIDNKVY 247
+F+ + A H AG+ VILD V H E D N Y S D +
Sbjct: 206 -------DFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHS----DPREG 254
Query: 248 YMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD-LASVLCR 303
Y D + NY V ++ + +W+ + +D R D +AS++ R
Sbjct: 255 YHQDWNTLIYNYG---------RREVSNFLVGNALYWIERFGIDALRVDAVASMIYR 302
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 31/178 (17%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G++ G+ + + +LG + + LLP+ E VN G SP +
Sbjct: 27 GNFAGVTADLQRIKDLGTDILWLLPINPIGE-------------VNRKG----TLGSPYA 69
Query: 188 RYAAGGGGPLKASW-EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKV 246
G P + +FK + H G++V+LD+VYNHT+ S ++
Sbjct: 70 IKDYRGINPEYGTLADFKALTDRAHELGMKVMLDIVYNHTSP--------DSVLATEHPE 121
Query: 247 YYMVDGTGQLLNYAGCGN---TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL 301
++ D GQL N G + L+ H + + +D+L +W VDG+R D+A ++
Sbjct: 122 WFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQIDTLLYW--SQFVDGYRCDVAPLV 177
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 49/210 (23%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K+L+IYE RA+ G++ +L L + + L +GIN V L+P+
Sbjct: 4 KNLIIYEAFARAYPGEKGK--------KFLSLEKDLERLKGMGINTVWLMPI---HPTGV 52
Query: 162 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 221
+ R+ Y I+ G G +FK+ VK H + V++D+
Sbjct: 53 EGRKGTLGSPYAIRDYYEIDLL-------IGTKG------DFKKFVKRAHELNMYVLMDM 99
Query: 222 VYNHTNEADDANPYTTSFRGIDNKV------YYMVDGTG----QLLNYAGCGNTLNCNHP 271
V NH +DN + +++ D G ++ +++ + + ++
Sbjct: 100 VLNHA--------------AVDNVLVKKHPEWFLRDENGNPTRKVPDWSDVVD-FDYSNG 144
Query: 272 VVMELILDSLRHWVVEYHVDGFRFDLASVL 301
+ E +++ +R+WV E+ VDGFR D+A ++
Sbjct: 145 ELREYMINMMRYWVEEFDVDGFRCDVAGLV 174
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K V Y++ R+F G+ G + GL +K+ +L LGI+A+ +
Sbjct: 8 KSAVFYQVYPRSFKDTNGDGI-----GDFKGLTEKLDYLKGLGIDAIWI----------- 51
Query: 162 QRRRNPRDHMVNT-WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILD 220
NP NT GY ++ M Y G ++ +F ++ L G+ +++D
Sbjct: 52 ----NPHYASPNTDNGYDISDYREVMKEY-----GTME---DFDRLMAELKKRGMRLMVD 99
Query: 221 VVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG---------------TGQ- 255
VV NH+++ A NPY + D K + + TGQ
Sbjct: 100 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQY 159
Query: 256 LLNYAGCGNT-LNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 314
L+Y G LN + P + E + LR W ++ V G RFD + + T G P P
Sbjct: 160 YLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPE 217
Query: 315 LIRAIAK 321
++ A+
Sbjct: 218 QMKNFAE 224
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K V Y++ R+F G+ G + GL +K+ +L LGI+A+ +
Sbjct: 7 KSAVFYQVYPRSFKDTNGDGI-----GDFKGLTEKLDYLKGLGIDAIWI----------- 50
Query: 162 QRRRNPRDHMVNT-WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILD 220
NP NT GY ++ M Y G ++ +F ++ L G+ +++D
Sbjct: 51 ----NPHYASPNTDNGYDISDYREVMKEY-----GTME---DFDRLMAELKKRGMRLMVD 98
Query: 221 VVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG---------------TGQ- 255
VV NH+++ A NPY + D K + + TGQ
Sbjct: 99 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQY 158
Query: 256 LLNYAGCGNT-LNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 314
L+Y G LN + P + E + LR W ++ V G RFD + + T G P P
Sbjct: 159 YLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPE 216
Query: 315 LIRAIAK 321
++ A+
Sbjct: 217 QMKNFAE 223
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K V Y++ R+F G+ G + GL +K+ +L LGI+A+ +
Sbjct: 7 KSAVFYQVYPRSFKDTNGDGI-----GDFKGLTEKLDYLKGLGIDAIWI----------- 50
Query: 162 QRRRNPRDHMVNT-WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILD 220
NP NT GY ++ M Y G ++ +F ++ L G+ +++D
Sbjct: 51 ----NPHYASPNTDNGYDISDYREVMKEY-----GTME---DFDRLMAELKKRGMRLMVD 98
Query: 221 VVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG---------------TGQ- 255
VV NH+++ A NPY + D K + + TGQ
Sbjct: 99 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQY 158
Query: 256 LLNYAGCGNT-LNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 314
L+Y G LN + P + E + LR W ++ V G RFD + + T G P P
Sbjct: 159 YLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPE 216
Query: 315 LIRAIAK 321
++ A+
Sbjct: 217 QMKNFAE 223
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 227
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 227
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K V Y++ R+F G+ G + GL +K+ +L LGI+A+ +
Sbjct: 8 KSAVFYQVYPRSFKDTNGDGI-----GDFKGLTEKLDYLKGLGIDAIWI----------- 51
Query: 162 QRRRNPRDHMVNT-WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILD 220
NP NT GY ++ M Y G ++ +F ++ L G+ +++D
Sbjct: 52 ----NPHYASPNTDNGYDISDYREVMKEY-----GTME---DFDRLMAELKKRGMRLMVD 99
Query: 221 VVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG---------------TGQ- 255
VV NH+++ A NPY + D K + + TGQ
Sbjct: 100 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQY 159
Query: 256 LLNYAGCGNT-LNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 314
L+Y G LN + P + E + LR W ++ V G RFD + + T G P P
Sbjct: 160 YLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPE 217
Query: 315 LIRAIAK 321
++ A+
Sbjct: 218 QMKNFAE 224
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 227
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 227
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 227
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 114 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 161
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 227
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 162 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 193
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 258
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 259 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 304
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 305 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 350
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGQLWKGPSEYPNWD 231
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K V Y++ R+F G+ G + GL +K+ +L LGI+A+ +
Sbjct: 35 KSAVFYQVYPRSFKDTNGDGI-----GDFKGLTEKLDYLKGLGIDAIWI----------- 78
Query: 162 QRRRNPRDHMVNT-WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILD 220
NP NT GY ++ M Y G ++ +F ++ L G+ +++D
Sbjct: 79 ----NPHYASPNTDNGYDISDYREVMKEY-----GTME---DFDRLMAELKKRGMRLMVD 126
Query: 221 VVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG---------------TGQ- 255
VV NH+++ A NPY + D K + + TGQ
Sbjct: 127 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQY 186
Query: 256 LLNYAGCGNT-LNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 314
L+Y G LN + P + E + LR W ++ V G RFD + + T G P P
Sbjct: 187 YLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPE 244
Query: 315 LIRAIAK 321
++ A+
Sbjct: 245 QMKNFAE 251
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLYLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 227
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 258
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 259 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 304
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 305 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 350
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 258
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 259 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 304
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 305 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 350
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLYLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 227
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In
Complex With Maltotetraose
Length = 429
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 258
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 259 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 304
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 305 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 350
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGGLWKGPSEYPNWD 231
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 258
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 259 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 304
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 305 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 350
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 54/240 (22%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K+ V Y++ R+F G+ G G+I+K+ +L LGI+A+ + P ++ +
Sbjct: 7 KEAVFYQVYPRSFKDTNGDGI-----GDINGIIEKLDYLKALGIDAIWINPHYDSPNTDN 61
Query: 162 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 221
GY ++ M Y G ++ +F ++ + + +++DV
Sbjct: 62 --------------GYDIRDYRKIMKEY-----GTME---DFDRLISEMKKRNMRLMIDV 99
Query: 222 VYNHTNEADD---------ANPYTTSFRGIDNK---------------VYYMVDGTGQ-- 255
V NHT++ ++ NPY + D K + + T Q
Sbjct: 100 VINHTSDQNEWFVKSKSSKDNPYRGYYFWKDAKEGQAPNNYPSFFGGSAWQKDEKTNQYY 159
Query: 256 LLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPL 315
L +A LN ++P V + + LR W ++ V G RFD + + D L L
Sbjct: 160 LHYFAKQQPDLNWDNPKVRQDLYAMLRFW-LDKGVSGLRFDTVATYSKIPDFPNLTQQQL 218
>pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
Maltose
Length = 637
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G++ ++ +P + LG +A+ LLPV ++ F++ P YS N
Sbjct: 117 GTFFKMMLLLPFVKSLGADAIYLLPVSRMSDL-FKKGDAPS-------PYSVKNPMELDE 168
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVV 222
RY P K EFK V+A H GI VILD +
Sbjct: 169 RYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFI 203
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 25/121 (20%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G G+++ I HL +LG+ + L P+F + H +T Y +I+ +
Sbjct: 262 GDLAGIMKHIDHLEDLGVETIYLTPIFS----------STSYHRYDTIDYKSIDKY---- 307
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 247
L +F+++V+ LH I+++LD+ +HTN ++ + + R +N Y
Sbjct: 308 ---------LGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNEL--FVKALREGENSPY 356
Query: 248 Y 248
+
Sbjct: 357 W 357
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 38/192 (19%)
Query: 128 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 183
G + G+I KI +L ++G+ A+ + E F M N + GY +F
Sbjct: 49 GDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVM------NDASGSASYHGYWARDFK 102
Query: 184 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 242
P + G L +F+ +V A H GI+VI+D NHT+ A + NP Y + R
Sbjct: 103 KPNPFF-----GTLS---DFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLY 154
Query: 243 DN-----------KVYYMVDGTGQLLN-----YAGCGNTLNCNH--PVVMELILDSLRHW 284
DN +Y+ +G + Y + + NH PV+ + D+++ W
Sbjct: 155 DNGTLLGGYTNDANMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMW 214
Query: 285 VVEYHVDGFRFD 296
++ +DG R D
Sbjct: 215 -IDMGIDGIRMD 225
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 258
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 259 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 304
+ G LN HP V + D + +Y GFRF+
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFN-------- 193
Query: 305 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 350
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 99/247 (40%), Gaps = 57/247 (23%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K V Y++ R+F G+ G + GL +K+ +L LGI+A+ +
Sbjct: 7 KSAVFYQVYPRSFKDTNGDGI-----GDFKGLTEKLDYLKGLGIDAIWI----------- 50
Query: 162 QRRRNPRDHMVNT-WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILD 220
NP NT GY ++ M Y G ++ +F ++ L G+ +++D
Sbjct: 51 ----NPHYASPNTDNGYDISDYREVMKEY-----GTME---DFDRLMAELKKRGMRLMVD 98
Query: 221 VVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG---------------TGQ- 255
VV NH+++ A NPY + D K + + TGQ
Sbjct: 99 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQY 158
Query: 256 LLNYAGCGNT-LNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 314
L+Y G LN + P + E + LR W ++ V G RF + + T G P P
Sbjct: 159 YLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRFATVATYSK-TPGFPDLTPE 216
Query: 315 LIRAIAK 321
++ A+
Sbjct: 217 QMKNFAE 223
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 59/168 (35%), Gaps = 49/168 (29%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 258
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 259 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 304
+ G LN HP V + D + +Y GFRF
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFG-------- 193
Query: 305 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 350
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 35/193 (18%)
Query: 129 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 188
S+ L + + + G A++ P+ + E N D ++ W + + P S
Sbjct: 15 SFNTLKHNMKDIHDAGYTAIQTSPINQVKE------GNQGDKSMSNWYW----LYQPTSY 64
Query: 189 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 248
G L EFKEM A GI+VI+D V NHT T + I N+V
Sbjct: 65 QI--GNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHT---------TFDYAAISNEVKS 113
Query: 249 M---VDGTGQLLNYAG----CGNTL------NCNHPVVMELILDSLRHWVVEYHVDGFRF 295
+ G Q+ N++ N+L N + V + L + DGFRF
Sbjct: 114 IPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLER-ALNDGADGFRF 172
Query: 296 DLASVLCRGTDGS 308
D A + DGS
Sbjct: 173 DAAKHIELPDDGS 185
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 35/193 (18%)
Query: 129 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 188
S+ L + + + G A++ P+ + E N D ++ W + + P S
Sbjct: 18 SFNTLKHNMKDIHDAGYTAIQTSPINQVKE------GNQGDKSMSNWYW----LYQPTSY 67
Query: 189 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 248
G L EFKEM A GI+VI+D V NHT T + I N+V
Sbjct: 68 QI--GNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHT---------TFDYAAISNEVKS 116
Query: 249 M---VDGTGQLLNYAG----CGNTL------NCNHPVVMELILDSLRHWVVEYHVDGFRF 295
+ G Q+ N++ N+L N + V + L + DGFRF
Sbjct: 117 IPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLER-ALNDGADGFRF 175
Query: 296 DLASVLCRGTDGS 308
D A + DGS
Sbjct: 176 DAAKHIELPDDGS 188
>pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus
Sp. Kr-8104
Length = 422
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 35/192 (18%)
Query: 129 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 188
S+ L + + + G A++ P+ + E N D + W + + P S
Sbjct: 15 SFNTLKNNMKDIHDAGYTAIQTSPINQVKE------GNKGDKSMGNWYW----LYQPTSY 64
Query: 189 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 248
G L + EFKEM A G++VI+D V NHT T+ + I N++
Sbjct: 65 QI--GNRYLGSEEEFKEMCAAAEEYGVKVIVDAVINHT---------TSDYAAISNEIKS 113
Query: 249 MVD---GTGQLLNYAG----CGNTL------NCNHPVVMELILDSLRHWVVEYHVDGFRF 295
+ + G Q+ N++ N+L N + V + L + DGFR+
Sbjct: 114 ISNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLER-ALNDGADGFRY 172
Query: 296 DLASVLCRGTDG 307
D A + DG
Sbjct: 173 DAAKHIELPDDG 184
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/243 (19%), Positives = 99/243 (40%), Gaps = 58/243 (23%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K+ V+Y++ ++F G+ G G+I ++ +L +LGI+A+ L PV++ ++
Sbjct: 8 KNAVVYQVYPKSFQDSNGDGI-----GDLQGIISRLDYLEKLGIDAIWLSPVYQSPGVDN 62
Query: 162 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 221
GY ++ + +Y + E++ I++++D+
Sbjct: 63 --------------GYDISDYEAIDPQYGTMA--------DMDELISKAKEHHIKIVMDL 100
Query: 222 VYNHTNEADDANPYTTSFRGIDNKV--YYM----VD----------------------GT 253
V NHT +D + + +G DN+ YY+ VD G
Sbjct: 101 VVNHT--SDQHKWFVEAKKGKDNQYRDYYIWRDPVDEHEPNDLKSAFSGSAWKYDERSGQ 158
Query: 254 GQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAP 313
L +A LN + + + I + + W ++ + GFR D+ ++ + D +
Sbjct: 159 YYLHFFADQQPDLNWQNTELRQKIYNMMNFW-LDKGIGGFRMDVIELIGKDPDKNIRENG 217
Query: 314 PLI 316
P++
Sbjct: 218 PML 220
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTSFRG---------------IDNK 245
+ K ++ ALHG G++ I D+V NH T E D F G D++
Sbjct: 69 QLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARLDWGPHMICRDDR 128
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNH--PVVMELILDSLRHWVVEYHVDGFRFDLAS 299
Y DGTG A G + +H V + +++ L + DG+RFD A
Sbjct: 129 PY--ADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDGWRFDFAK 182
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 28/125 (22%)
Query: 105 VIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 164
+ Y++ + +F + G G G+ QK+ +L +LG+ A+ L P+
Sbjct: 39 ISYQLLLYSFADSDGDGY-----GDLNGVTQKLDYLNQLGVKALWLSPIHPCXSY----- 88
Query: 165 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 224
H + Y+ +N P L +F +V H GI++ LD V N
Sbjct: 89 -----HGYDVTDYTKVN---PQ----------LGTESDFDRLVTEAHNRGIKIYLDYVXN 130
Query: 225 HTNEA 229
HT A
Sbjct: 131 HTGTA 135
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 18/113 (15%)
Query: 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTW--GYSTINFFSPMSRYAAG 192
KIP E GI+A+ L P P M + GY ++F Y G
Sbjct: 32 SKIPEWYEAGISAIWLPP--------------PSKGMSGGYSMGYDPYDYFDLGEYYQKG 77
Query: 193 GGGP-LKASWEFKEMVKALHGAGIEVILDVVYNHTNEAD-DANPYTTSFRGID 243
+ E +++ H GI+VI DVV NH D + NP+ + D
Sbjct: 78 TVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTD 130
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
Query: 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGG 194
QKIP + GI+A+ + P + + +P D F + Y G
Sbjct: 32 QKIPEWYDAGISAIWIPPASKGMGGAYSMGYDPYD-------------FFDLGEYDQKGT 78
Query: 195 GPLK--ASWEFKEMVKALHGAGIEVILDVVYNHTNEAD-DANPYTTSFRGID 243
+ + E M+ H G++VI D+V NH D + NP+ + D
Sbjct: 79 VETRFGSKQELVNMINTAHAYGMKVIADIVINHRAGGDLEWNPFVNDYTWTD 130
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 28/125 (22%)
Query: 105 VIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 164
+ Y++ + +F + G G G+ QK+ +L +LG+ A+ L P+ M +
Sbjct: 39 ISYQLLLYSFADSDGDGY-----GDLNGVTQKLDYLNQLGVKALWLSPIHPC--MSY--- 88
Query: 165 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 224
H + Y+ +N P L +F +V H GI++ LD V N
Sbjct: 89 -----HGYDVTDYTKVN---PQ----------LGTESDFDRLVTEAHNRGIKIYLDYVMN 130
Query: 225 HTNEA 229
HT A
Sbjct: 131 HTGTA 135
>pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant
Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE
Length = 414
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH 225
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant
Length = 414
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH 225
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH 225
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
Inactive Mutant D180a In Complex With Maltoheptaose
pdb|1RP9|A Chain A, Crystal Structure Of Barley Alpha-amylase Isozyme 1 (amy1)
Inactive Mutant D180a In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH 225
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha-
Amylase Isozyme 1
pdb|1P6W|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With The Substrate Analogue, Methyl
4i,4ii,4iii- Tri-Thiomaltotetraoside (Thio-Dp4)
pdb|1RPK|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH 225
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|B Chain B, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|C Chain C, Sugar Tongs Mutant S378p In Complex With Acarbose
Length = 405
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH 225
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 257
+F+ ++ H I+VI+D NHT+ A + +P Y + R DN Y D G
Sbjct: 118 DFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFH 177
Query: 258 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+Y G + LN + + + +++ W ++ +DG R D
Sbjct: 178 HYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVW-LDMGIDGIRLD 230
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 257
+F+ ++ H I+VI+D NHT+ A + +P Y + R DN Y D G
Sbjct: 118 DFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFH 177
Query: 258 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+Y G + LN + + + +++ W ++ +DG R D
Sbjct: 178 HYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVW-LDMGIDGIRLD 230
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFE-FDEMEFQRRRNPRDHMVNTWGYSTINFFSPM 186
G G+ QK+P+L +LG+ + L PV + D + N H GY T +F
Sbjct: 49 GDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLA--GTDNTGYH-----GYWTRDFKQIE 101
Query: 187 SRYAAGGGGPLKASW-EFKEMVKALHGAGIEVILDVVYNHT 226
+ +W F +V H GI+VI+D V NH+
Sbjct: 102 EHF---------GNWTTFDTLVNDAHQNGIKVIVDFVPNHS 133
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 258
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 259 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 297
+ G + LN N+ V + D+++ W ++ +DG R D+
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMDV 230
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 258
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 259 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSSYEDGIYRNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 128 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 182
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 183 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDAN 233
F M+ +F+ ++ H GI++++D NHT+ AD N
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPADAEN 148
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 258
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 259 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 258
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 259 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKGLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 258
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 259 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLLDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 25/128 (19%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGADFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 297 LASVLCRG 304
+ + G
Sbjct: 198 ASKHMAPG 205
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 258
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 259 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLWDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 258
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 259 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLFDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 258
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 259 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLGDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 258
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 259 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 258
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 259 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEAD-----DANPYTTSFRGIDNKVYYMVDGTGQL 256
++ + ++A H AG++V DVV++H AD DA S R + Y + +
Sbjct: 83 QYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTK- 141
Query: 257 LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 303
++ G GNT + W YH DG +D + L R
Sbjct: 142 FDFPGRGNTYSSFK-----------WRW---YHFDGVDWDESRKLSR 174
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 19/100 (19%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT--WGYSTINFFSP 185
G++ G+I K+ ++ +G A+ + PV + P+D GY + +S
Sbjct: 40 GTWQGIIDKLDYIQGMGFTAIWITPV---------TAQLPQDCAYGDAYTGYWQTDIYSL 90
Query: 186 MSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNH 225
Y + K + ALH G+ +++DVV NH
Sbjct: 91 NENYGTAD--------DLKALSSALHERGMYLMVDVVANH 122
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 59/234 (25%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K+ Y++ +F G G G+ K+ ++ ELG +A+ + P ++
Sbjct: 16 KEATFYQIYPASFKDSNDDGW-----GDMKGIASKLEYIKELGADAIWISPFYD------ 64
Query: 162 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 221
+P+D M GY N+ Y + +++ H G++ I D+
Sbjct: 65 ----SPQDDM----GYDIANYEKVWPTYGTNE--------DCFALIEKTHKLGMKFITDL 108
Query: 222 VYNHTNE---------ADDANPYTTSF-----RGIDN----------KVYY-----MVDG 252
V NH + + NP F +G D K Y+ D
Sbjct: 109 VINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDE 168
Query: 253 TGQ---LLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 303
Q L + LN + + I +S + +++ VDGFR D+ S+ +
Sbjct: 169 KTQEFYLRLFCSTQPDLNWENEDCRKAIYESAVGYWLDHGVDGFRIDVGSLYSK 222
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 128 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 183
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 184 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 242
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 243 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 284
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDLSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 285 VVEYHVDGFRFD 296
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 128 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 183
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 184 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 242
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 243 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 284
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 285 VVEYHVDGFRFD 296
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 28/182 (15%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
GS+ G+I + ++ +G A+ + P+ E Q ++ D GY + S
Sbjct: 40 GSWQGIIDHLDYIEGMGFTAIWISPITE------QLPQDTADGEAYH-GYWQQKIYDVNS 92
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS-FRGIDNKV 246
+ K + ALH G+ +++DVV +H A + N S F D+
Sbjct: 93 NFGTAD--------NLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSS 144
Query: 247 YY----MVDGTGQLLNYAGC--GNT------LNCNHPVVMELILDSLRHWVVEYHVDGFR 294
Y+ ++ L C G+T L+ V + D + V Y VDG R
Sbjct: 145 YFHPYCLITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLR 204
Query: 295 FD 296
D
Sbjct: 205 ID 206
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 128 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 183
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 184 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 242
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 243 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 284
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 285 VVEYHVDGFRFD 296
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 258
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASPDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 259 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 128 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 183
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 184 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 242
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 243 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 284
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 285 VVEYHVDGFRFD 296
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 59/234 (25%)
Query: 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161
K+ Y++ +F G G G+ K+ ++ ELG +A+ + P ++
Sbjct: 16 KEATFYQIYPASFKDSNDDGW-----GDMKGIASKLEYIKELGADAIWISPFYD------ 64
Query: 162 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 221
+P+D M GY N+ Y + +++ H G++ I D+
Sbjct: 65 ----SPQDDM----GYDIANYEKVWPTYGTNE--------DCFALIEKTHKLGMKFITDL 108
Query: 222 VYNHT---------NEADDANPYTTSF-----RGIDN----------KVYY-----MVDG 252
V NH + + NP F +G D K Y+ D
Sbjct: 109 VINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDE 168
Query: 253 TGQ---LLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 303
Q L + LN + + I +S + +++ VDGFR D+ S+ +
Sbjct: 169 KTQEFYLRLFCSTQPDLNWENEDCRKAIYESAVGYWLDHGVDGFRIDVGSLYSK 222
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 128 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 183
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 184 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 242
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 243 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 284
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 285 VVEYHVDGFRFD 296
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 257
+FK ++ H I+VI+D NHT+ A +P + + R DN Y D
Sbjct: 117 DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFH 176
Query: 258 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+Y G + LN N+ V + D+++ W ++ VDG R D
Sbjct: 177 HYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW-LDLGVDGIRVD 229
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 20/99 (20%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G+ G+ +++ +L LG+ + L+P+ E E N GY+ ++ +
Sbjct: 108 GTLKGVEERLDYLEGLGVKYLHLMPLLRPREGE------------NDGGYAVQDYRA--V 153
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT 226
R G L A + +AL G GI ++LD+V NH
Sbjct: 154 RPDLGTMDDLSA------LARALRGRGISLVLDLVLNHV 186
>pdb|3OLD|A Chain A, Crystal Structure Of Alpha-Amylase In Complex With
Acarviostatin I03
pdb|3OLE|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Ii03
pdb|3OLG|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iii03
pdb|3OLI|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iv03
Length = 496
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 25/128 (19%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 297 LASVLCRG 304
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1B2Y|A Chain A, Structure Of Human Pancreatic Alpha-Amylase In Complex
With The Carbohydrate Inhibitor Acarbose
Length = 496
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|1XGZ|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase
pdb|1XH0|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Acarbose
pdb|1XH1|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride
pdb|1XH2|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride And Acarbose
pdb|3BAK|A Chain A, N298s Mutant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate
pdb|3BAX|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Azide
pdb|3BAY|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate And Acarbose
Length = 496
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|2CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|3CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
Length = 496
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|1CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|1U2Y|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
D-Gluconhydroximo-1,5-Lactam
pdb|1U30|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
Maltosyl-Alpha (1,4)-D- Gluconhydroximo-1,5-Lactam
pdb|1U33|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors
pdb|1XCW|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XCX|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD0|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD1|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1BSI|A Chain A, Human Pancreatic Alpha-Amylase From Pichia Pastoris,
Glycosylated Protein
pdb|1HNY|A Chain A, The Structure Of Human Pancreatic Alpha-Amylase At 1.8
Angstroms Resolution And Comparisons With Related
Enzymes
pdb|2QMK|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite
pdb|2QV4|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite And
Acarbose
pdb|3BAI|A Chain A, Human Pancreatic Alpha Amylase With Bound Nitrate
pdb|3BAJ|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Nitrate And
Acarbose
pdb|3BAW|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Azide
pdb|3IJ7|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ8|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ9|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|4GQQ|A Chain A, Human Pancreatic Alpha-Amylase With Bound Ethyl Caffeate
pdb|4GQR|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Myricetin
Length = 496
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|1KGW|A Chain A, Three Dimensional Structure Analysis Of The R337q Variant
Of Human Pancreatic Alpha-Mylase
Length = 496
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|1KBB|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha- Amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose
pdb|3BCD|A Chain A, Alpha-Amylase B In Complex With Maltotetraose And
Alpha-Cyclodextrin
pdb|3BCF|A Chain A, Alpha-Amylase B From Halothermothrix Orenii
Length = 599
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 27/145 (18%)
Query: 97 PNIPEKDL-------VIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVE 149
P IP++++ +EMN + + PE + L ++ P L E G AV
Sbjct: 114 PQIPDQEVNHTILQAFYWEMNTGEYATEH-----PEEANLWNLLAERAPELAEAGFTAVW 168
Query: 150 LLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLK--ASWEFKEMV 207
L P N ++ GY T + + + + G K E + +
Sbjct: 169 LPPA------------NKGMAGIHDVGYGTYDLWD-LGEFDQKGTVRTKYGTKGELENAI 215
Query: 208 KALHGAGIEVILDVVYNHTNEADDA 232
ALH I+V D V NH AD A
Sbjct: 216 DALHNNDIKVYFDAVLNHRMGADYA 240
>pdb|1Q4N|X Chain X, Structural Studies Of Phe256trp Of Human Salivary Alpha-
Amylase: Implications For The Role Of A Conserved Water
Molecule And Its Associated Chain In Enzyme Activity
Length = 496
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 25/128 (19%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 297 LASVLCRG 304
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 48/128 (37%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP--------------------------- 234
+F+ ++ A H I+VI+D NHT+ A P
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 235 ------YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 288
++T+ GI +Y + D LN N+ V + D+++ W ++
Sbjct: 177 HNLGTDFSTTENGIYKNLYDLAD--------------LNHNNSTVDVYLKDAIKMW-LDL 221
Query: 289 HVDGFRFD 296
+DG R D
Sbjct: 222 GIDGIRMD 229
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 258
+F+ ++ A H I+VI++ NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIINFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 259 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1KGU|A Chain A, Three Dimensional Structure Analysis Of The R337a Variant
Of Human Pancreatic Alpha-Amylase
Length = 496
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 25/128 (19%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 297 LASVLCRG 304
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant Human
Salivary Amylase
pdb|1MFV|A Chain A, Probing The Role Of A Mobile Loop In Human Slaivary
Amylase: Structural Studies On The Loop-Deleted Enzyme
pdb|1XV8|A Chain A, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1XV8|B Chain B, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1SMD|A Chain A, Human Salivary Amylase
Length = 496
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|1NM9|A Chain A, Crystal Structure Of Recombinant Human Salivary Amylase
Mutant W58a
Length = 496
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|3BLK|A Chain A, Role Of Aromatic Residues In Starch Binding
Length = 496
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary Alpha-Amylase
Length = 496
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of Human Salivary
Amylase
Length = 496
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 258
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 259 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+ G + LN N+ V + D+++ W ++ +DG R +
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMN 229
>pdb|1IZJ|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mutant
Enzyme F313a
Length = 637
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 117/317 (36%), Gaps = 81/317 (25%)
Query: 59 KLVEGRRHFGDASAKLSKFLGTYEFESLPFD---WGDNYKLPNIPEKDLVIYEMNVRAFT 115
++ R + GD+S + G+Y + P + WG + + LV F
Sbjct: 137 QIFPDRFYNGDSSNDVQT--GSYTYNGTPTEKKAWGSSVYADPGYDNSLV--------FF 186
Query: 116 GDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTW 175
G + +G+D + LG I+K LG N + L P+F + P +H +T
Sbjct: 187 GGDLAGIDQK-----LGYIKKT-----LGANILYLNPIF----------KAPTNHKYDTQ 226
Query: 176 GYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA------ 229
Y ++ A G L+ ++ +G +ILD V+NHT ++
Sbjct: 227 DYMAVD-------PAFGDNSTLQT--LINDIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277
Query: 230 -----------DDANP---YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNC----NHP 271
++P Y T + D+ ++ + LNY G+ + N
Sbjct: 278 YNNFSSQGAYESQSSPWYNYYTFYTWPDSYASFLGANSLPKLNYGNSGSAVRGVIYNNSN 337
Query: 272 VVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGTDGSPLNAPPLIRAI--AKDAILSRC 328
V + L+ Y VDG+R D A V G +GS + + A + S
Sbjct: 338 SVAKTYLNP------PYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVKGVNSNA 391
Query: 329 KIIAE------PWDCRG 339
II E PW +G
Sbjct: 392 AIIGEYWGNANPWTAQG 408
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP 234
+F+ ++ A H I+VI+D NHT+ A P
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQP 149
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 45/196 (22%)
Query: 128 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 182
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 183 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSF--- 239
F M+ +F+ ++ H GI++++D NHT+ A + + TSF
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPAMETD---TSFAEN 154
Query: 240 -RGIDNKVY---YMVDGTGQLLNYAGC----------GNT-----LNCNHPVVMELILDS 280
R DN Y D G + G NT N N+ + + D+
Sbjct: 155 GRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNTYDLADFNHNNATIDKYFKDA 214
Query: 281 LRHWVVEYHVDGFRFD 296
++ W ++ VDG R D
Sbjct: 215 IKLW-LDMGVDGIRVD 229
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187
G++ G+I K+ ++ +G A+ + PV ++ H GY + +S
Sbjct: 40 GTWQGIIDKLDYIQGMGFTAIWITPVTA--QLPQTTAYGDAYH-----GYWQQDIYSLNE 92
Query: 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNH 225
Y + K + ALH G+ +++DVV NH
Sbjct: 93 NYGTAD--------DLKALSSALHERGMYLMVDVVANH 122
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 203 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY-MVDGTGQLLNYAG 261
F E V LH G ++++ V +N + + PY RG D K++ DG L+
Sbjct: 347 FPEFVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVW 406
Query: 262 CGNTL-------NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASV------LCRGTDGS 308
G T+ NC E L H VE+ DG D+ V G +
Sbjct: 407 PGQTVFPDYTNPNCAVWWTKEF---ELFHNQVEF--DGIWIDMNEVSNFVDGSVSGCSTN 461
Query: 309 PLNAPPLIRAIAKDAILSRCKIIA 332
LN PP I + CK +
Sbjct: 462 NLNNPPFTPRILDGYLF--CKTLC 483
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 203 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY-MVDGTGQLLNYAG 261
F E V LH G ++++ V +N + + PY RG D K++ DG L+
Sbjct: 347 FPEFVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVW 406
Query: 262 CGNTL-------NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASV------LCRGTDGS 308
G T+ NC E L H VE+ DG D+ V G +
Sbjct: 407 PGQTVFPDYTNPNCAVWWTKEF---ELFHNQVEF--DGIWIDMNEVSNFVDGSVSGCSTN 461
Query: 309 PLNAPPLIRAIAKDAILSRCKIIA 332
LN PP I + CK +
Sbjct: 462 NLNNPPFTPRILDGYLF--CKTLC 483
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 258
+F+ ++ A H I+VI+ NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIAFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 259 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 296
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1BVN|P Chain P, Pig Pancreatic Alpha-Amylase In Complex With The
Proteinaceous Inhibitor Tendamistat
Length = 496
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 250
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 251 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 296
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRLD 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|1IZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mutant
Enzyme W398v
Length = 637
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 117/317 (36%), Gaps = 81/317 (25%)
Query: 59 KLVEGRRHFGDASAKLSKFLGTYEFESLPFD---WGDNYKLPNIPEKDLVIYEMNVRAFT 115
++ R + GD+S + G+Y + P + WG + + LV F
Sbjct: 137 QIFPDRFYNGDSSNDVQT--GSYTYNGTPTEKKAWGSSVYADPGYDNSLV--------FF 186
Query: 116 GDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTW 175
G + +G+D + LG I+K LG N + L P+F + P +H +T
Sbjct: 187 GGDLAGIDQK-----LGYIKKT-----LGANILYLNPIF----------KAPTNHKYDTQ 226
Query: 176 GYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA------ 229
Y ++ A G L+ ++ +G +ILD V+NHT ++
Sbjct: 227 DYMAVD-------PAFGDNSTLQT--LINDIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277
Query: 230 -----------DDANP---YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNC----NHP 271
++P Y T + D+ ++ + LNY G+ + N
Sbjct: 278 YNNFSSQGAYESQSSPWYNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSN 337
Query: 272 VVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGTDGSPLNAPPLIRAI--AKDAILSRC 328
V + L+ Y VDG+R D A V G +GS + + A + S
Sbjct: 338 SVAKTYLNP------PYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVKGVNSNA 391
Query: 329 KIIAE------PWDCRG 339
II E PW +G
Sbjct: 392 AIIGEYVGNANPWTAQG 408
>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1JI1|B Chain B, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1UH3|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseACARBOSE
Complex
Length = 637
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 117/317 (36%), Gaps = 81/317 (25%)
Query: 59 KLVEGRRHFGDASAKLSKFLGTYEFESLPFD---WGDNYKLPNIPEKDLVIYEMNVRAFT 115
++ R + GD+S + G+Y + P + WG + + LV F
Sbjct: 137 QIFPDRFYNGDSSNDVQT--GSYTYNGTPTEKKAWGSSVYADPGYDNSLV--------FF 186
Query: 116 GDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTW 175
G + +G+D + LG I+K LG N + L P+F + P +H +T
Sbjct: 187 GGDLAGIDQK-----LGYIKKT-----LGANILYLNPIF----------KAPTNHKYDTQ 226
Query: 176 GYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA------ 229
Y ++ A G L+ ++ +G +ILD V+NHT ++
Sbjct: 227 DYMAVD-------PAFGDNSTLQT--LINDIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277
Query: 230 -----------DDANP---YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNC----NHP 271
++P Y T + D+ ++ + LNY G+ + N
Sbjct: 278 YNNFSSQGAYESQSSPWYNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSN 337
Query: 272 VVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGTDGSPLNAPPLIRAI--AKDAILSRC 328
V + L+ Y VDG+R D A V G +GS + + A + S
Sbjct: 338 SVAKTYLNP------PYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVKGVNSNA 391
Query: 329 KIIAE------PWDCRG 339
II E PW +G
Sbjct: 392 AIIGEYWGNANPWTAQG 408
>pdb|1KXQ|A Chain A, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|B Chain B, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|C Chain C, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|D Chain D, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXT|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|E Chain E, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|B Chain B, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 496
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 250
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 251 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 296
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 128 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 182
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 183 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 229
F M+ +F+ ++ H GI++++D NHT+ A
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPA 144
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 128 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 182
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 183 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 229
F M+ +F+ ++ H GI++++D NHT+ A
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPA 144
>pdb|1JFH|A Chain A, Structure Of A Pancreatic Alpha-Amylase Bound To A
Substrate Analogue At 2.03 Angstrom Resolution
Length = 496
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 250
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 251 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 296
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|1PPI|A Chain A, The Active Center Of A Mammalian Alpha-Amylase. The
Structure Of The Complex Of A Pancreatic Alpha-Amylase
With A Carbohydrate Inhibitor Refined To 2.2 Angstroms
Resolution
Length = 496
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 250
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 251 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 296
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|1DHK|A Chain A, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 496
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 250
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 251 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 296
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|1PIF|A Chain A, Pig Alpha-amylase
pdb|1PIG|A Chain A, Pig Pancreatic Alpha-Amylase Complexed With The
Oligosaccharide V-1532
Length = 496
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 250
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 251 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 296
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 128 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 182
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 183 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 229
F M+ +F+ ++ H GI++++D NHT+ A
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPA 144
>pdb|1OSE|A Chain A, Porcine Pancreatic Alpha-Amylase Complexed With Acarbose
Length = 496
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 250
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 251 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 296
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|3T3K|A Chain A, 1.24 A Structure Of Friedreich's Ataxia Frataxin Variant
Q148r
Length = 129
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 17/58 (29%)
Query: 375 GILATRISGSSDLYRVNKRKPYHSI-----------------NFIIAHDGFTLYDLVS 415
G+L ++ G Y +NKR P I N++ +HDG +L++L++
Sbjct: 49 GVLTVKLGGDLGTYVINKRTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGVSLHELLA 106
>pdb|1KGX|A Chain A, Three Dimensional Structure Analysis Of The R195q Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 245
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 246 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 296
G+G + NY +C +++L L D +R + EY V GF+ D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFQLD 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 65/190 (34%), Gaps = 60/190 (31%)
Query: 133 LIQKIPHLLELGINAVELLPVFE--------------FDEMEFQRRRNPRDHMVNTWGYS 178
L HL ++GI AV + P ++ +D EFQ++ R
Sbjct: 23 LQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVR---------- 72
Query: 179 TINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT- 237
++Y E ++ + +LH ++V DVV NH AD T
Sbjct: 73 --------TKYGTKS--------ELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAV 116
Query: 238 ----SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGF 293
+ R + Y + + G GNT + D HW YH DG
Sbjct: 117 EVNPANRNQETSEEYQIKAWTD-FRFPGRGNTYS-----------DFKWHW---YHFDGA 161
Query: 294 RFDLASVLCR 303
+D + + R
Sbjct: 162 DWDESRKISR 171
>pdb|1UA3|A Chain A, Crystal Structure Of The Pig Pancreatic A-Amylase
Complexed With Malto-Oligosaccharides
Length = 496
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 250
EF++MV + G+ + +D V NH T NP F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFN 137
Query: 251 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 296
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
>pdb|1HX0|A Chain A, Structure Of Pig Pancreatic Alpha-Amylase Complexed With
The "truncate" Acarbose Molecule (Pseudotrisaccharide)
pdb|1WO2|A Chain A, Crystal Structure Of The Pig Pancreatic Alpha-Amylase
Complexed With Malto-Oligosaacharides Under The Effect
Of The Chloride Ion
Length = 496
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 202 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 250
EF++MV + G+ + +D V NH T NP F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFN 137
Query: 251 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 296
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 297 LA 298
+
Sbjct: 198 AS 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,505,435
Number of Sequences: 62578
Number of extensions: 993533
Number of successful extensions: 2357
Number of sequences better than 100.0: 180
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 2026
Number of HSP's gapped (non-prelim): 289
length of query: 631
length of database: 14,973,337
effective HSP length: 105
effective length of query: 526
effective length of database: 8,402,647
effective search space: 4419792322
effective search space used: 4419792322
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)