Query 006791
Match_columns 631
No_of_seqs 300 out of 2359
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 14:32:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02100 glgX_debranch glycog 100.0 1E-105 3E-110 888.5 58.4 600 8-630 45-688 (688)
2 COG1523 PulA Type II secretory 100.0 6E-106 1E-110 871.8 46.1 598 8-630 62-691 (697)
3 PRK03705 glycogen debranching 100.0 3E-104 6E-109 870.8 55.9 585 10-630 50-657 (658)
4 PRK14510 putative bifunctional 100.0 4.8E-93 1E-97 828.8 50.7 552 10-585 56-648 (1221)
5 TIGR02104 pulA_typeI pullulana 100.0 1.5E-85 3.4E-90 728.4 45.9 513 12-601 55-601 (605)
6 TIGR02102 pullulan_Gpos pullul 100.0 8.6E-84 1.9E-88 731.8 52.6 566 11-630 362-1004(1111)
7 PLN02877 alpha-amylase/limit d 100.0 2.7E-82 5.9E-87 703.5 45.0 568 11-630 256-968 (970)
8 TIGR02103 pullul_strch alpha-1 100.0 4E-80 8.7E-85 689.4 45.2 560 13-630 171-896 (898)
9 PRK12568 glycogen branching en 100.0 1.1E-72 2.4E-77 616.4 47.7 518 8-630 167-728 (730)
10 KOG0470 1,4-alpha-glucan branc 100.0 1.7E-73 3.7E-78 599.3 36.3 595 1-628 118-750 (757)
11 TIGR02402 trehalose_TreZ malto 100.0 4.3E-73 9.2E-78 617.9 38.0 450 9-580 24-540 (542)
12 PRK14706 glycogen branching en 100.0 5.3E-72 1.1E-76 614.7 46.5 516 12-630 71-621 (639)
13 PRK12313 glycogen branching en 100.0 1.1E-70 2.3E-75 613.7 46.6 515 13-631 72-628 (633)
14 PRK05402 glycogen branching en 100.0 3.3E-70 7.1E-75 616.2 45.2 514 13-630 166-723 (726)
15 TIGR01515 branching_enzym alph 100.0 2.2E-70 4.7E-75 606.7 42.0 510 14-629 64-613 (613)
16 PRK14705 glycogen branching en 100.0 2.4E-69 5.3E-74 617.1 44.8 512 13-630 673-1222(1224)
17 PRK10785 maltodextrin glucosid 100.0 1.6E-69 3.4E-74 598.2 37.5 405 99-595 117-580 (598)
18 PLN02960 alpha-amylase 100.0 7.8E-65 1.7E-69 553.6 46.4 523 11-630 322-891 (897)
19 PRK10933 trehalose-6-phosphate 100.0 9.3E-66 2E-70 561.4 35.8 437 100-631 7-551 (551)
20 TIGR02403 trehalose_treC alpha 100.0 4.3E-65 9.4E-70 557.5 36.7 432 100-629 1-542 (543)
21 PLN02447 1,4-alpha-glucan-bran 100.0 9.3E-64 2E-68 547.1 46.3 534 8-630 143-730 (758)
22 TIGR02456 treS_nterm trehalose 100.0 1.2E-64 2.7E-69 555.5 36.9 462 100-629 2-537 (539)
23 COG0296 GlgB 1,4-alpha-glucan 100.0 1.4E-63 3E-68 532.1 34.4 511 15-629 73-627 (628)
24 PRK09505 malS alpha-amylase; R 100.0 2.6E-60 5.7E-65 522.0 31.2 402 97-575 183-682 (683)
25 PRK09441 cytoplasmic alpha-amy 100.0 3.6E-53 7.8E-58 459.4 32.2 386 128-628 19-478 (479)
26 PLN03244 alpha-amylase; Provis 100.0 1.8E-47 3.9E-52 409.2 41.7 497 13-630 328-866 (872)
27 PLN00196 alpha-amylase; Provis 100.0 4.8E-47 1E-51 399.1 27.1 326 127-575 40-402 (428)
28 PF00128 Alpha-amylase: Alpha 100.0 1.5E-47 3.3E-52 396.9 18.8 278 128-486 1-313 (316)
29 PLN02361 alpha-amylase 100.0 2.4E-45 5.2E-50 381.2 30.4 327 128-574 26-377 (401)
30 TIGR03852 sucrose_gtfA sucrose 100.0 8.9E-46 1.9E-50 387.9 24.4 397 109-581 3-467 (470)
31 PRK13840 sucrose phosphorylase 100.0 1.1E-42 2.4E-47 366.8 28.4 403 103-584 3-476 (495)
32 COG0366 AmyA Glycosidases [Car 100.0 4.8E-43 1E-47 387.6 26.8 399 104-585 1-494 (505)
33 KOG0471 Alpha-amylase [Carbohy 100.0 2.6E-42 5.7E-47 375.0 26.4 448 99-629 13-544 (545)
34 PLN02784 alpha-amylase 100.0 6.6E-40 1.4E-44 356.6 28.5 302 101-527 496-835 (894)
35 TIGR02455 TreS_stutzeri trehal 100.0 8E-38 1.7E-42 329.8 31.7 472 102-630 50-681 (688)
36 TIGR02401 trehalose_TreY malto 100.0 5E-34 1.1E-38 314.5 30.8 177 127-333 12-282 (825)
37 PRK14511 maltooligosyl trehalo 100.0 2.6E-29 5.5E-34 278.4 29.9 88 128-236 17-104 (879)
38 smart00642 Aamy Alpha-amylase 99.9 2.3E-25 5E-30 205.6 9.9 97 108-228 1-97 (166)
39 KOG2212 Alpha-amylase [Carbohy 99.9 8.1E-22 1.8E-26 190.3 19.0 385 129-601 38-466 (504)
40 PRK14507 putative bifunctional 99.8 8.2E-19 1.8E-23 206.7 18.8 100 103-236 743-842 (1693)
41 PF14872 GHL5: Hypothetical gl 99.7 1.7E-14 3.6E-19 150.8 27.4 159 102-300 177-392 (811)
42 COG3280 TreY Maltooligosyl tre 99.7 7.1E-16 1.5E-20 163.7 14.5 88 128-236 16-103 (889)
43 TIGR01531 glyc_debranch glycog 99.5 4.3E-14 9.2E-19 162.1 8.6 92 127-239 128-220 (1464)
44 PF11941 DUF3459: Domain of un 99.0 1.4E-09 3E-14 90.0 7.3 89 516-628 1-89 (89)
45 cd02852 Isoamylase_N_term Isoa 98.9 2.1E-09 4.6E-14 94.0 7.8 65 3-68 37-101 (119)
46 PF14701 hDGE_amylase: glucano 98.8 1.2E-08 2.7E-13 105.8 9.9 94 128-240 19-113 (423)
47 cd02856 Glycogen_debranching_e 98.7 3E-08 6.4E-13 84.3 6.3 57 10-67 40-96 (103)
48 PF11852 DUF3372: Domain of un 98.5 1.6E-07 3.5E-12 84.9 5.5 114 512-630 42-166 (168)
49 PF14871 GHL6: Hypothetical gl 98.5 1.5E-06 3.3E-11 76.7 10.7 122 135-296 4-131 (132)
50 PF02638 DUF187: Glycosyl hydr 98.4 2.1E-06 4.5E-11 88.0 12.6 142 129-296 17-161 (311)
51 PF02806 Alpha-amylase_C: Alph 98.2 1E-06 2.2E-11 73.7 3.9 81 550-631 6-94 (95)
52 cd02860 Pullulanase_N_term Pul 98.1 3.4E-06 7.4E-11 71.2 4.4 48 11-67 43-90 (100)
53 PF02324 Glyco_hydro_70: Glyco 97.7 3.9E-05 8.5E-10 82.5 5.1 110 100-228 561-674 (809)
54 COG1649 Uncharacterized protei 97.6 0.0003 6.5E-09 73.4 10.1 146 128-300 61-210 (418)
55 PRK14508 4-alpha-glucanotransf 97.6 0.02 4.4E-07 62.4 24.4 29 128-156 23-52 (497)
56 cd06592 GH31_glucosidase_KIAA1 97.6 0.00061 1.3E-08 69.9 11.5 132 128-299 27-165 (303)
57 cd06593 GH31_xylosidase_YicI Y 97.5 0.00083 1.8E-08 69.2 12.0 138 128-304 21-164 (308)
58 PF10438 Cyc-maltodext_C: Cycl 97.4 7.8E-05 1.7E-09 58.8 1.8 71 551-629 7-77 (78)
59 PF02324 Glyco_hydro_70: Glyco 97.3 0.0011 2.4E-08 71.7 9.9 283 263-599 143-481 (809)
60 KOG3625 Alpha amylase [Carbohy 97.3 0.00019 4.2E-09 79.1 4.2 93 128-239 139-232 (1521)
61 cd06597 GH31_transferase_CtsY 97.3 0.00068 1.5E-08 70.6 8.1 95 202-299 86-187 (340)
62 cd02854 Glycogen_branching_enz 97.3 0.0004 8.7E-09 58.1 5.2 45 13-65 39-89 (99)
63 PRK14507 putative bifunctional 97.3 0.002 4.4E-08 78.3 12.8 121 464-599 1501-1665(1693)
64 PF02065 Melibiase: Melibiase; 97.2 0.0059 1.3E-07 64.5 13.3 171 130-336 57-236 (394)
65 cd06599 GH31_glycosidase_Aec37 97.1 0.0028 6.2E-08 65.4 10.6 91 202-299 74-168 (317)
66 cd02853 MTHase_N_term Maltooli 97.1 0.00063 1.4E-08 55.4 4.2 39 9-61 34-72 (85)
67 PF13199 Glyco_hydro_66: Glyco 97.1 0.0096 2.1E-07 65.2 14.3 162 129-321 116-297 (559)
68 cd06594 GH31_glucosidase_YihQ 97.0 0.002 4.3E-08 66.4 7.7 141 128-300 20-167 (317)
69 PF08533 Glyco_hydro_42C: Beta 96.9 0.0024 5.1E-08 47.7 5.8 54 557-629 4-57 (58)
70 PRK14510 putative bifunctional 96.9 0.12 2.6E-06 62.7 22.6 29 128-156 743-771 (1221)
71 PF02922 CBM_48: Carbohydrate- 96.8 0.001 2.2E-08 54.2 3.0 39 11-58 45-85 (85)
72 COG1501 Alpha-glucosidases, fa 96.8 0.16 3.6E-06 58.3 21.4 92 202-301 322-417 (772)
73 COG3280 TreY Maltooligosyl tre 96.8 0.0021 4.6E-08 70.2 5.9 97 464-574 713-826 (889)
74 cd06591 GH31_xylosidase_XylS X 96.7 0.0045 9.8E-08 64.0 8.1 91 202-299 67-159 (319)
75 smart00632 Aamy_C Aamy_C domai 96.7 0.0052 1.1E-07 49.4 6.7 71 550-628 5-76 (81)
76 cd06600 GH31_MGAM-like This fa 96.6 0.0065 1.4E-07 62.7 7.8 93 202-299 65-160 (317)
77 cd06602 GH31_MGAM_SI_GAA This 96.3 0.014 3.1E-07 60.8 8.2 94 204-299 69-165 (339)
78 PLN02635 disproportionating en 96.2 0.025 5.4E-07 61.9 10.1 42 108-156 33-75 (538)
79 PF13200 DUF4015: Putative gly 95.8 0.11 2.4E-06 52.9 12.1 138 128-301 10-149 (316)
80 PRK10658 putative alpha-glucos 95.8 0.025 5.5E-07 64.0 8.1 92 202-301 326-420 (665)
81 cd06604 GH31_glucosidase_II_Ma 95.4 0.037 8E-07 57.8 7.1 132 129-299 22-159 (339)
82 cd06598 GH31_transferase_CtsZ 95.3 0.055 1.2E-06 55.9 7.9 90 202-299 71-164 (317)
83 PF01055 Glyco_hydro_31: Glyco 95.2 0.018 3.9E-07 62.6 4.2 95 202-300 84-181 (441)
84 cd02855 Glycogen_branching_enz 95.1 0.04 8.6E-07 46.7 5.3 43 14-65 57-99 (106)
85 PRK14582 pgaB outer membrane N 95.1 0.25 5.5E-06 55.6 12.8 140 128-301 331-470 (671)
86 PRK10426 alpha-glucosidase; Pr 95.0 0.059 1.3E-06 60.8 7.7 95 202-303 270-367 (635)
87 PRK11052 malQ 4-alpha-glucanot 94.4 0.31 6.7E-06 55.4 11.3 41 110-155 149-189 (695)
88 cd06603 GH31_GANC_GANAB_alpha 94.1 0.11 2.4E-06 54.3 6.7 92 202-298 65-161 (339)
89 TIGR00217 malQ 4-alpha-glucano 94.0 0.24 5.3E-06 54.3 9.3 24 201-224 212-235 (513)
90 cd06542 GH18_EndoS-like Endo-b 93.7 0.23 5.1E-06 49.5 8.0 63 201-298 51-113 (255)
91 cd06595 GH31_xylosidase_XylS-l 93.7 0.12 2.7E-06 52.6 6.0 83 202-297 75-157 (292)
92 cd06564 GH20_DspB_LnbB-like Gl 93.6 0.46 1E-05 49.3 10.1 79 201-295 82-163 (326)
93 cd02858 Esterase_N_term Estera 93.1 0.12 2.6E-06 41.9 3.9 36 13-62 38-74 (85)
94 PLN02763 hydrolase, hydrolyzin 93.0 0.3 6.5E-06 57.0 8.2 91 202-298 242-335 (978)
95 PF14488 DUF4434: Domain of un 92.5 0.39 8.4E-06 44.4 6.9 70 131-225 20-89 (166)
96 COG3589 Uncharacterized conser 92.3 0.17 3.6E-06 50.9 4.3 27 201-227 49-75 (360)
97 PF02446 Glyco_hydro_77: 4-alp 92.1 0.17 3.6E-06 55.7 4.6 24 201-224 192-215 (496)
98 cd02875 GH18_chitobiase Chitob 91.8 0.39 8.4E-06 50.5 6.8 77 204-321 67-143 (358)
99 PF00150 Cellulase: Cellulase 91.6 0.21 4.5E-06 50.4 4.4 62 132-224 22-85 (281)
100 COG1640 MalQ 4-alpha-glucanotr 90.8 2.3 5E-05 46.3 11.3 26 201-226 210-235 (520)
101 PF05913 DUF871: Bacterial pro 90.7 0.3 6.5E-06 50.9 4.5 63 128-227 11-73 (357)
102 cd06568 GH20_SpHex_like A subg 90.2 2.5 5.5E-05 43.8 10.9 124 129-288 16-153 (329)
103 cd02742 GH20_hexosaminidase Be 90.2 2 4.3E-05 44.1 10.0 75 201-288 72-147 (303)
104 cd06601 GH31_lyase_GLase GLase 90.1 0.88 1.9E-05 47.2 7.3 68 202-298 65-132 (332)
105 KOG1065 Maltase glucoamylase a 89.5 2.4 5.2E-05 48.1 10.5 90 203-297 353-446 (805)
106 cd06565 GH20_GcnA-like Glycosy 89.3 2.6 5.7E-05 43.1 10.0 114 129-289 15-131 (301)
107 cd02871 GH18_chitinase_D-like 89.0 1.8 3.8E-05 44.7 8.6 61 201-299 60-120 (312)
108 cd06545 GH18_3CO4_chitinase Th 88.7 1.5 3.3E-05 43.6 7.7 82 201-322 46-127 (253)
109 TIGR01531 glyc_debranch glycog 88.5 17 0.00036 44.4 16.9 60 269-338 487-546 (1464)
110 cd06563 GH20_chitobiase-like T 88.2 3.4 7.4E-05 43.4 10.3 79 201-289 86-165 (357)
111 cd06562 GH20_HexA_HexB-like Be 87.9 3.7 8E-05 43.0 10.3 80 201-290 70-150 (348)
112 PF02449 Glyco_hydro_42: Beta- 87.7 2.5 5.4E-05 44.8 9.0 122 132-297 11-136 (374)
113 PRK05402 glycogen branching en 87.5 0.56 1.2E-05 54.2 4.2 38 13-61 61-98 (726)
114 PF02446 Glyco_hydro_77: 4-alp 87.3 0.83 1.8E-05 50.3 5.1 65 110-192 2-67 (496)
115 cd02861 E_set_proteins_like E 87.1 0.83 1.8E-05 36.7 3.8 34 15-61 36-69 (82)
116 PF00728 Glyco_hydro_20: Glyco 86.0 1.2 2.5E-05 46.8 5.3 140 128-295 15-162 (351)
117 TIGR03849 arch_ComA phosphosul 85.7 2 4.3E-05 41.8 6.2 54 127-221 60-120 (237)
118 cd06570 GH20_chitobiase-like_1 85.5 9.1 0.0002 39.3 11.3 78 201-289 68-147 (311)
119 PF07745 Glyco_hydro_53: Glyco 83.0 2.2 4.9E-05 44.0 5.6 57 135-227 28-84 (332)
120 cd06589 GH31 The enzymes of gl 82.9 7.9 0.00017 38.8 9.5 94 128-300 21-117 (265)
121 cd02688 E_set E or "early" set 80.0 3.6 7.8E-05 32.4 4.8 28 11-39 35-63 (83)
122 PF03198 Glyco_hydro_72: Gluca 79.1 2.4 5.2E-05 42.8 4.1 50 134-227 56-105 (314)
123 PF02679 ComA: (2R)-phospho-3- 78.5 3 6.5E-05 40.9 4.5 55 127-222 73-134 (244)
124 TIGR01370 cysRS possible cyste 78.5 7.8 0.00017 39.7 7.7 67 265-332 137-211 (315)
125 PLN03236 4-alpha-glucanotransf 77.7 4.1 9E-05 46.5 5.9 70 109-192 66-135 (745)
126 cd02874 GH18_CFLE_spore_hydrol 77.5 5.2 0.00011 41.2 6.3 86 203-322 47-132 (313)
127 PF14883 GHL13: Hypothetical g 77.2 38 0.00082 34.0 11.7 119 135-295 21-142 (294)
128 PLN02950 4-alpha-glucanotransf 76.7 6 0.00013 46.7 7.1 57 127-192 279-335 (909)
129 PF01120 Alpha_L_fucos: Alpha- 76.1 7.6 0.00016 40.6 7.1 119 137-299 97-216 (346)
130 PF01301 Glyco_hydro_35: Glyco 75.9 3.3 7.1E-05 42.8 4.2 60 133-223 26-85 (319)
131 cd06569 GH20_Sm-chitobiase-lik 75.6 15 0.00033 39.8 9.4 86 200-286 96-191 (445)
132 cd06547 GH85_ENGase Endo-beta- 75.1 5.4 0.00012 41.5 5.6 67 204-301 49-115 (339)
133 PRK11052 malQ 4-alpha-glucanot 73.5 7.4 0.00016 44.5 6.6 65 104-192 148-216 (695)
134 TIGR03356 BGL beta-galactosida 70.7 25 0.00054 38.0 9.6 100 128-289 51-150 (427)
135 PLN02635 disproportionating en 69.7 23 0.0005 39.2 9.1 20 395-414 412-431 (538)
136 COG2730 BglC Endoglucanase [Ca 68.9 8.4 0.00018 41.3 5.5 61 134-222 76-137 (407)
137 PTZ00445 p36-lilke protein; Pr 67.3 13 0.00029 35.4 5.8 68 131-219 28-96 (219)
138 cd00598 GH18_chitinase-like Th 66.8 25 0.00054 33.4 8.0 85 201-321 49-135 (210)
139 TIGR01211 ELP3 histone acetylt 66.7 17 0.00038 40.1 7.4 62 135-227 207-268 (522)
140 PLN03059 beta-galactosidase; P 65.8 9.2 0.0002 44.2 5.2 59 134-223 62-120 (840)
141 cd02877 GH18_hevamine_XipI_cla 65.8 36 0.00079 34.4 9.0 20 201-220 59-78 (280)
142 smart00812 Alpha_L_fucos Alpha 64.5 70 0.0015 34.0 11.2 113 137-298 87-202 (384)
143 cd06546 GH18_CTS3_chitinase GH 63.5 34 0.00073 34.1 8.3 48 269-322 92-139 (256)
144 PRK05628 coproporphyrinogen II 63.4 21 0.00046 37.7 7.3 62 135-227 109-171 (375)
145 PRK15452 putative protease; Pr 63.3 59 0.0013 35.2 10.6 19 201-219 46-64 (443)
146 PF13204 DUF4038: Protein of u 60.9 18 0.00038 36.8 5.8 77 130-225 29-110 (289)
147 PF10566 Glyco_hydro_97: Glyco 60.7 88 0.0019 31.4 10.5 65 127-221 28-93 (273)
148 PF13380 CoA_binding_2: CoA bi 59.2 21 0.00046 30.6 5.2 21 132-152 67-87 (116)
149 TIGR00539 hemN_rel putative ox 58.5 29 0.00062 36.5 7.2 62 135-227 101-163 (360)
150 PRK08207 coproporphyrinogen II 56.6 37 0.0008 37.3 7.8 63 134-227 269-332 (488)
151 PRK13210 putative L-xylulose 5 56.4 1.1E+02 0.0024 30.6 10.9 54 132-219 17-70 (284)
152 cd04824 eu_ALAD_PBGS_cysteine_ 56.1 1.2E+02 0.0026 30.9 10.4 137 103-294 21-159 (320)
153 PF09154 DUF1939: Domain of un 56.0 7.8 0.00017 28.7 1.7 56 568-628 1-56 (57)
154 PLN02950 4-alpha-glucanotransf 55.6 22 0.00048 42.1 6.2 24 201-224 461-484 (909)
155 cd04823 ALAD_PBGS_aspartate_ri 55.1 2.5E+02 0.0054 28.7 13.7 134 103-294 24-160 (320)
156 PRK09856 fructoselysine 3-epim 54.2 1.6E+02 0.0034 29.4 11.5 51 132-218 14-64 (275)
157 KOG2499 Beta-N-acetylhexosamin 53.7 53 0.0011 35.3 7.8 28 201-228 250-278 (542)
158 PRK08208 coproporphyrinogen II 53.5 37 0.0008 36.7 7.1 27 201-227 177-204 (430)
159 cd00019 AP2Ec AP endonuclease 53.5 1.2E+02 0.0027 30.2 10.7 22 131-152 10-31 (279)
160 smart00518 AP2Ec AP endonuclea 53.4 1.2E+02 0.0026 30.2 10.5 52 133-219 12-63 (273)
161 PF07071 DUF1341: Protein of u 52.8 23 0.0005 33.3 4.5 42 135-217 139-180 (218)
162 TIGR00433 bioB biotin syntheta 52.6 55 0.0012 33.2 7.9 25 201-225 158-182 (296)
163 PLN02808 alpha-galactosidase 52.2 49 0.0011 35.0 7.4 71 552-630 307-383 (386)
164 cd02859 AMPKbeta_GBD_like AMP- 52.1 27 0.00058 27.6 4.4 23 14-37 34-56 (79)
165 PRK09997 hydroxypyruvate isome 51.6 31 0.00067 34.2 5.8 84 133-219 17-103 (258)
166 PRK09283 delta-aminolevulinic 50.6 3E+02 0.0064 28.2 13.5 132 103-294 29-163 (323)
167 PRK10076 pyruvate formate lyas 50.6 39 0.00085 32.6 6.1 20 200-219 192-211 (213)
168 PRK05660 HemN family oxidoredu 50.3 49 0.0011 35.0 7.4 62 135-227 108-170 (378)
169 COG1242 Predicted Fe-S oxidore 49.3 60 0.0013 32.4 7.0 57 201-302 168-224 (312)
170 PF08821 CGGC: CGGC domain; I 49.0 56 0.0012 27.7 6.0 27 130-156 51-77 (107)
171 KOG0496 Beta-galactosidase [Ca 48.7 33 0.00072 38.2 5.7 63 135-228 53-115 (649)
172 PRK09852 cryptic 6-phospho-bet 48.0 1E+02 0.0022 33.8 9.3 69 128-227 68-136 (474)
173 COG3867 Arabinogalactan endo-1 47.3 49 0.0011 33.2 6.0 25 201-225 104-128 (403)
174 PRK09058 coproporphyrinogen II 47.2 1.1E+02 0.0024 33.3 9.6 27 201-227 199-226 (449)
175 cd02931 ER_like_FMN Enoate red 47.1 1.7E+02 0.0036 31.1 10.7 27 200-228 82-109 (382)
176 PRK13384 delta-aminolevulinic 47.1 3.3E+02 0.0072 27.8 13.6 130 103-293 31-164 (322)
177 PRK09249 coproporphyrinogen II 47.1 61 0.0013 35.3 7.6 27 201-227 187-214 (453)
178 PLN02229 alpha-galactosidase 47.0 68 0.0015 34.3 7.6 71 553-630 341-417 (427)
179 PRK07094 biotin synthase; Prov 46.7 54 0.0012 33.8 6.9 27 201-227 165-191 (323)
180 PLN03236 4-alpha-glucanotransf 46.5 43 0.00094 38.5 6.4 25 201-225 274-298 (745)
181 PRK08446 coproporphyrinogen II 46.1 65 0.0014 33.7 7.4 63 134-227 98-161 (350)
182 PRK13347 coproporphyrinogen II 45.4 65 0.0014 35.1 7.5 27 201-227 188-215 (453)
183 COG0826 Collagenase and relate 43.4 1.6E+02 0.0035 30.7 9.6 20 201-220 49-68 (347)
184 PF00490 ALAD: Delta-aminolevu 43.4 71 0.0015 32.6 6.7 137 103-294 27-165 (324)
185 TIGR03234 OH-pyruv-isom hydrox 42.8 44 0.00094 33.0 5.3 85 132-219 15-102 (254)
186 PRK05904 coproporphyrinogen II 42.4 79 0.0017 33.2 7.3 62 135-227 104-166 (353)
187 PRK08599 coproporphyrinogen II 42.0 71 0.0015 33.8 7.0 62 135-227 101-163 (377)
188 cd02803 OYE_like_FMN_family Ol 41.7 68 0.0015 33.1 6.7 28 199-228 75-102 (327)
189 PRK01060 endonuclease IV; Prov 41.2 45 0.00097 33.5 5.2 51 132-217 13-63 (281)
190 TIGR00538 hemN oxygen-independ 40.6 79 0.0017 34.4 7.3 27 201-227 187-214 (455)
191 PF15640 Tox-MPTase4: Metallop 39.8 32 0.0007 29.6 3.1 21 200-220 21-41 (132)
192 PF01212 Beta_elim_lyase: Beta 38.7 27 0.00059 35.5 3.1 23 200-222 144-166 (290)
193 PRK09989 hypothetical protein; 38.7 61 0.0013 32.1 5.6 79 133-218 17-102 (258)
194 cd04747 OYE_like_5_FMN Old yel 38.7 2.8E+02 0.0062 29.1 10.7 28 199-228 76-103 (361)
195 PRK06294 coproporphyrinogen II 37.9 1E+02 0.0022 32.6 7.4 62 135-227 104-166 (370)
196 COG3669 Alpha-L-fucosidase [Ca 37.5 4.6E+02 0.0099 27.8 11.4 99 101-237 21-130 (430)
197 PF09083 DUF1923: Domain of un 37.5 85 0.0018 22.6 4.3 31 551-582 7-37 (64)
198 TIGR03581 EF_0839 conserved hy 37.3 51 0.0011 31.5 4.3 22 134-155 138-159 (236)
199 cd06232 Peptidase_M14-like_5 P 37.2 2.9E+02 0.0063 27.0 9.5 91 130-247 55-160 (240)
200 PRK07379 coproporphyrinogen II 37.1 96 0.0021 33.1 7.1 62 135-227 116-178 (400)
201 PF01791 DeoC: DeoC/LacD famil 37.1 28 0.0006 34.1 2.8 58 134-225 79-136 (236)
202 cd02929 TMADH_HD_FMN Trimethyl 36.9 3.6E+02 0.0079 28.4 11.3 28 199-228 81-108 (370)
203 cd06543 GH18_PF-ChiA-like PF-C 36.9 1.1E+02 0.0025 31.0 7.2 63 201-301 54-116 (294)
204 KOG0259 Tyrosine aminotransfer 36.3 48 0.001 34.6 4.2 29 201-229 219-247 (447)
205 COG4943 Predicted signal trans 35.7 45 0.00098 35.8 4.1 23 201-223 458-480 (524)
206 PLN02692 alpha-galactosidase 35.6 1.1E+02 0.0025 32.5 7.1 72 552-630 331-408 (412)
207 COG0113 HemB Delta-aminolevuli 35.6 3E+02 0.0066 27.9 9.5 54 103-156 31-86 (330)
208 TIGR01210 conserved hypothetic 35.5 46 0.00099 34.3 4.2 25 201-225 155-179 (313)
209 PRK05799 coproporphyrinogen II 35.3 1.2E+02 0.0026 32.0 7.5 62 135-227 100-162 (374)
210 COG3345 GalA Alpha-galactosida 35.0 95 0.002 34.1 6.3 135 129-296 307-441 (687)
211 PRK05967 cystathionine beta-ly 34.6 44 0.00096 35.6 4.0 27 199-225 164-190 (395)
212 TIGR00542 hxl6Piso_put hexulos 34.3 62 0.0013 32.5 4.9 54 131-218 16-69 (279)
213 cd06548 GH18_chitinase The GH1 33.9 50 0.0011 34.1 4.2 29 269-297 105-133 (322)
214 PF03711 OKR_DC_1_C: Orn/Lys/A 33.9 44 0.00096 29.7 3.2 38 470-532 87-124 (136)
215 COG2200 Rtn c-di-GMP phosphodi 33.7 54 0.0012 32.6 4.3 89 104-225 121-217 (256)
216 PF07894 DUF1669: Protein of u 33.6 27 0.00058 35.0 2.0 21 201-222 137-157 (284)
217 PF07555 NAGidase: beta-N-acet 33.6 1.3E+02 0.0028 30.8 7.0 99 129-296 13-111 (306)
218 PRK15014 6-phospho-beta-glucos 33.4 2.2E+02 0.0047 31.3 9.2 68 128-226 66-133 (477)
219 cd00384 ALAD_PBGS Porphobilino 33.3 5.4E+02 0.012 26.3 13.9 131 103-293 21-154 (314)
220 TIGR03471 HpnJ hopanoid biosyn 33.3 1.2E+02 0.0027 33.1 7.4 25 201-225 323-347 (472)
221 PRK15447 putative protease; Pr 33.2 99 0.0021 31.6 6.1 19 201-219 48-66 (301)
222 PRK06582 coproporphyrinogen II 33.1 1.5E+02 0.0032 31.6 7.7 62 135-227 112-173 (390)
223 PRK11059 regulatory protein Cs 33.1 66 0.0014 36.8 5.4 100 102-226 516-615 (640)
224 cd02803 OYE_like_FMN_family Ol 33.0 2.6E+02 0.0057 28.7 9.5 73 129-225 135-219 (327)
225 PRK09028 cystathionine beta-ly 32.9 50 0.0011 35.2 4.1 27 198-224 160-186 (394)
226 KOG3625 Alpha amylase [Carbohy 32.3 79 0.0017 36.8 5.4 64 264-338 499-568 (1521)
227 PRK09057 coproporphyrinogen II 32.2 1.4E+02 0.003 31.7 7.3 62 135-227 105-166 (380)
228 KOG0257 Kynurenine aminotransf 31.7 94 0.002 32.8 5.6 109 128-236 101-227 (420)
229 COG0626 MetC Cystathionine bet 31.7 39 0.00084 35.9 2.9 31 193-223 158-188 (396)
230 COG1306 Uncharacterized conser 31.3 2.7E+02 0.0059 28.1 8.3 141 131-301 77-221 (400)
231 cd02876 GH18_SI-CLP Stabilin-1 30.9 58 0.0012 33.5 4.1 29 269-297 88-116 (318)
232 KOG0053 Cystathionine beta-lya 30.8 40 0.00088 35.6 2.8 31 193-223 171-201 (409)
233 cd02879 GH18_plant_chitinase_c 30.2 57 0.0012 33.3 3.8 29 269-297 88-116 (299)
234 smart00636 Glyco_18 Glycosyl h 29.7 63 0.0014 33.4 4.2 51 269-321 87-137 (334)
235 smart00733 Mterf Mitochondrial 29.4 37 0.0008 20.4 1.5 17 130-146 15-31 (31)
236 cd06549 GH18_trifunctional GH1 29.3 62 0.0013 33.0 3.9 49 269-321 84-132 (298)
237 COG1891 Uncharacterized protei 29.0 26 0.00056 32.1 0.9 23 200-222 166-188 (235)
238 COG0134 TrpC Indole-3-glycerol 28.9 60 0.0013 32.1 3.5 21 201-221 143-163 (254)
239 PRK13523 NADPH dehydrogenase N 28.5 3.7E+02 0.0079 28.0 9.5 28 199-228 79-106 (337)
240 PRK05939 hypothetical protein; 28.5 63 0.0014 34.5 4.0 24 200-223 147-170 (397)
241 PRK08898 coproporphyrinogen II 28.4 1.6E+02 0.0035 31.3 7.1 62 135-227 123-184 (394)
242 COG1809 (2R)-phospho-3-sulfola 28.4 90 0.002 30.0 4.4 44 136-220 95-138 (258)
243 cd02872 GH18_chitolectin_chito 28.2 63 0.0014 33.9 3.9 29 269-297 92-120 (362)
244 PLN02803 beta-amylase 28.1 2.8E+02 0.006 30.5 8.5 85 102-229 84-172 (548)
245 PRK09593 arb 6-phospho-beta-gl 27.7 4E+02 0.0086 29.3 10.0 68 128-226 70-137 (478)
246 PRK13209 L-xylulose 5-phosphat 27.6 5.7E+02 0.012 25.4 10.7 53 133-219 23-75 (283)
247 PRK11145 pflA pyruvate formate 27.6 88 0.0019 30.7 4.6 19 200-218 227-245 (246)
248 PRK14457 ribosomal RNA large s 26.8 1.6E+02 0.0034 30.8 6.4 19 201-219 306-324 (345)
249 PRK14453 chloramphenicol/florf 26.8 1.7E+02 0.0037 30.6 6.7 19 201-219 306-324 (347)
250 PF00704 Glyco_hydro_18: Glyco 26.6 75 0.0016 32.8 4.1 52 270-321 96-147 (343)
251 PRK14455 ribosomal RNA large s 26.6 1.3E+02 0.0029 31.5 5.9 19 201-219 313-331 (356)
252 TIGR01233 lacG 6-phospho-beta- 25.7 2.6E+02 0.0055 30.7 8.0 101 128-291 50-150 (467)
253 PF01053 Cys_Met_Meta_PP: Cys/ 25.6 66 0.0014 34.2 3.4 31 193-223 149-180 (386)
254 PRK07050 cystathionine beta-ly 25.4 78 0.0017 33.7 4.0 26 200-225 166-191 (394)
255 PF14509 GH97_C: Glycosyl-hydr 24.6 2.8E+02 0.006 23.3 6.3 78 553-630 14-101 (103)
256 PF12683 DUF3798: Protein of u 24.6 1.5E+02 0.0032 29.5 5.3 70 203-321 152-221 (275)
257 COG2342 Predicted extracellula 23.8 2.8E+02 0.006 27.8 6.9 89 200-301 63-151 (300)
258 PF12996 DUF3880: DUF based on 23.7 53 0.0011 26.0 1.7 21 136-156 29-49 (79)
259 TIGR02127 pyrF_sub2 orotidine 23.6 88 0.0019 31.2 3.7 28 200-227 72-99 (261)
260 TIGR01140 L_thr_O3P_dcar L-thr 23.5 87 0.0019 32.3 3.9 28 200-227 144-171 (330)
261 PF01373 Glyco_hydro_14: Glyco 23.5 1.2E+02 0.0027 32.0 4.8 68 128-228 13-80 (402)
262 PRK04302 triosephosphate isome 23.5 1.5E+02 0.0033 28.7 5.3 20 201-220 101-120 (223)
263 COG1874 LacA Beta-galactosidas 23.3 1.4E+02 0.0031 34.0 5.6 57 131-219 30-86 (673)
264 TIGR01496 DHPS dihydropteroate 23.3 4E+02 0.0087 26.5 8.3 77 106-221 5-82 (257)
265 COG0520 csdA Selenocysteine ly 23.2 82 0.0018 33.7 3.6 34 181-222 167-200 (405)
266 PRK08255 salicylyl-CoA 5-hydro 23.1 7.5E+02 0.016 29.0 11.8 30 198-229 472-502 (765)
267 PLN02801 beta-amylase 23.0 2.7E+02 0.0058 30.5 7.2 68 128-229 34-102 (517)
268 COG1105 FruK Fructose-1-phosph 22.8 1E+02 0.0023 31.5 4.0 22 201-222 146-167 (310)
269 PRK07269 cystathionine gamma-s 22.8 68 0.0015 33.8 2.9 23 201-223 153-175 (364)
270 TIGR01212 radical SAM protein, 22.8 2.8E+02 0.0061 28.3 7.3 26 201-226 163-188 (302)
271 PF09260 DUF1966: Domain of un 22.6 65 0.0014 26.4 2.1 47 552-598 5-56 (91)
272 PRK13511 6-phospho-beta-galact 22.5 5.4E+02 0.012 28.1 9.8 67 128-226 51-117 (469)
273 PRK06256 biotin synthase; Vali 22.3 88 0.0019 32.4 3.6 25 201-225 187-211 (336)
274 cd02878 GH18_zymocin_alpha Zym 22.2 94 0.002 32.4 3.8 29 270-298 88-116 (345)
275 PRK11194 ribosomal RNA large s 22.0 3.7E+02 0.0081 28.4 8.1 68 105-219 263-331 (372)
276 cd00609 AAT_like Aspartate ami 21.9 92 0.002 31.8 3.7 28 200-227 151-178 (350)
277 PLN02509 cystathionine beta-ly 21.7 1E+02 0.0023 33.6 4.1 30 194-223 227-256 (464)
278 PRK05968 hypothetical protein; 21.6 1.1E+02 0.0023 32.6 4.1 25 199-223 162-186 (389)
279 PF01261 AP_endonuc_2: Xylose 21.5 43 0.00094 31.5 1.0 45 137-219 1-45 (213)
280 PF04343 DUF488: Protein of un 21.5 1E+02 0.0022 26.6 3.2 25 203-227 2-26 (122)
281 TIGR03127 RuMP_HxlB 6-phospho 21.3 1.9E+02 0.0042 26.6 5.4 19 201-219 86-104 (179)
282 COG0041 PurE Phosphoribosylcar 21.2 1E+02 0.0022 27.9 3.1 22 201-222 44-65 (162)
283 cd00614 CGS_like CGS_like: Cys 21.1 75 0.0016 33.4 2.8 23 201-223 142-164 (369)
284 PRK00278 trpC indole-3-glycero 20.9 1.1E+02 0.0023 30.6 3.7 22 201-222 147-168 (260)
285 cd02873 GH18_IDGF The IDGF's ( 20.7 1.1E+02 0.0023 32.9 3.9 28 269-296 101-128 (413)
286 TIGR03470 HpnH hopanoid biosyn 20.7 1.8E+02 0.004 29.9 5.5 39 106-146 126-164 (318)
287 PF14701 hDGE_amylase: glucano 20.5 1.4E+02 0.0031 31.9 4.6 32 269-302 374-405 (423)
288 TIGR00217 malQ 4-alpha-glucano 20.5 1.5E+02 0.0034 32.7 5.1 51 128-191 32-83 (513)
289 TIGR01324 cysta_beta_ly_B cyst 20.5 1.1E+02 0.0025 32.3 4.0 26 200-225 151-176 (377)
290 PRK10060 RNase II stability mo 20.4 84 0.0018 36.1 3.2 85 128-225 538-622 (663)
291 PRK08247 cystathionine gamma-s 20.3 1.2E+02 0.0025 32.0 4.0 24 200-223 152-175 (366)
292 PRK12928 lipoyl synthase; Prov 20.3 2.6E+02 0.0057 28.3 6.4 60 128-218 216-275 (290)
293 PF00232 Glyco_hydro_1: Glycos 20.2 1.9E+02 0.0042 31.5 5.8 100 128-289 55-155 (455)
294 PLN02389 biotin synthase 20.2 2E+02 0.0044 30.4 5.8 25 201-225 213-237 (379)
No 1
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.4e-105 Score=888.48 Aligned_cols=600 Identities=47% Similarity=0.808 Sum_probs=495.4
Q ss_pred CCCcCCCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCc-----------------
Q 006791 8 PRVNKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDA----------------- 70 (631)
Q Consensus 8 ~~~~~~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~----------------- 70 (631)
|+.+++++||+++|+++ .+|.+|+|+|+++..+..|.+|++.++++||||+++.+...++..
T Consensus 45 ~m~~~~~gvW~~~v~~~-~~g~~Y~yrv~g~~~~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (688)
T TIGR02100 45 PLPERTDDIWHGYLPGA-QPGQLYGYRVHGPYDPENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDE 123 (688)
T ss_pred ecccCCCCEEEEEECCC-CCCCEEEEEEeeeeCCCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccc
Confidence 44456788999999986 589999999998766777899998889999999999765332110
Q ss_pred cchhccccccccccCCCCCCCCCCCCCCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhh--chHHHHcCCceE
Q 006791 71 SAKLSKFLGTYEFESLPFDWGDNYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK--IPHLLELGINAV 148 (631)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~w~~~~~~p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~--LdyLk~LGvt~I 148 (631)
.........+++++ .+|+|.++..+|..+|+++|||||||++|+..+ ++++...+|||+||+++ |||||+||||+|
T Consensus 124 ~~~~~~~~~s~v~d-~~~~w~~~~~~p~~~~~d~iIYE~hvr~Ft~~~-~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI 201 (688)
T TIGR02100 124 RDSAPGMPKAVVVD-PDFDWGGDEQRPRTPWEDTIIYEAHVKGFTQLH-PDIPEELRGTYAGLAHPAMIDYLKKLGVTAV 201 (688)
T ss_pred cccccccCceEEeC-CCCCCCCcccCCCCCccccEEEEEEhHHhcCCC-CCCCcccccCHHHHhccchhHHHHHcCCCEE
Confidence 00000011222222 369998763456678899999999999999763 34555678999999996 999999999999
Q ss_pred EECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccC
Q 006791 149 ELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 228 (631)
Q Consensus 149 ~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~ 228 (631)
|||||+++.+...... ....++|||+|.+||+|+++||+.+ +++|||+||++||++||+||||||+|||+.
T Consensus 202 ~L~Pi~~~~~~~~~~~----~~~~~ywGYd~~~y~a~d~~y~~~g-----~~~efk~LV~~~H~~GI~VIlDvV~NHt~~ 272 (688)
T TIGR02100 202 ELLPVHAFIDDRHLLE----KGLRNYWGYNTLGFFAPEPRYLASG-----QVAEFKTMVRALHDAGIEVILDVVYNHTAE 272 (688)
T ss_pred EECCcccCCccccccc----cCCCCccCcCcccccccChhhcCCC-----CHHHHHHHHHHHHHCCCEEEEEECcCCccC
Confidence 9999999843221110 1123689999999999999997641 359999999999999999999999999997
Q ss_pred CCCCCCcccccCCCCCCcCeeeCCC--CCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCC
Q 006791 229 ADDANPYTTSFRGIDNKVYYMVDGT--GQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTD 306 (631)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~yy~~~~~--~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~ 306 (631)
.+...+. ..+++.++..||+.++. +.+.++++|+++||+++|+||++|+++++||+++|||||||||+|..|.++..
T Consensus 273 ~~~~~~~-~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~ 351 (688)
T TIGR02100 273 GNELGPT-LSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELY 351 (688)
T ss_pred cCCCCCc-ccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccC
Confidence 5443443 25677777888887654 67889999999999999999999999999999999999999999999987643
Q ss_pred CCCCCChHHHHHHHhccccCCCeEeeccCCCC-CccccCCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCc
Q 006791 307 GSPLNAPPLIRAIAKDAILSRCKIIAEPWDCR-GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSS 385 (631)
Q Consensus 307 ~~~~~~~~~l~~i~~~~~~~~~~li~E~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~ 385 (631)
+.. ...++++++++++++++++||||+|+.+ +.++.++|+. .|++||+.|++.|+.|++|+.+....++.++.++.
T Consensus 352 ~~~-~~~~~~~~i~~d~~~~~~~ligE~W~~~~~~~~~~~~~~--~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~ 428 (688)
T TIGR02100 352 GFD-MLSGFFTAIRQDPVLAQVKLIAEPWDIGPGGYQVGNFPP--GWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSS 428 (688)
T ss_pred CCc-ccHHHHHHHHhCcccCCeEEEEeeecCCCCcccccCCCC--ceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCH
Confidence 322 2467899999988899999999999876 5666777763 57999999999999999999999999999999999
Q ss_pred cccccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 006791 386 DLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLA 465 (631)
Q Consensus 386 ~~~~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 465 (631)
++|....+.|.+++|||+|||++||.|+++++.|||+++|+.|+||+++|+|||||++|++.++.+...+.+++|+++++
T Consensus 429 ~~~~~~~~~~~~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~ 508 (688)
T TIGR02100 429 DLFEHNGRRPWASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLAT 508 (688)
T ss_pred hhccccCCCcCEEEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 88876667888999999999999999999999999999999999999999999999999999988888889999999999
Q ss_pred HHhcCCceeeecccccccccCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCCCCcCCCCC-------
Q 006791 466 LMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNI------- 538 (631)
Q Consensus 466 l~~~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~------- 538 (631)
+||+|||||||||||+|+++.|++|+||+++.+++|+|+..+. ..++++|+|+||+|||+||+|+.+++...
T Consensus 509 l~~s~GiP~i~~GdE~g~t~~G~~n~y~~~~~~~~~dW~~~~~-~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~ 587 (688)
T TIGR02100 509 LLLSQGTPMLLAGDEFGRTQQGNNNAYCQDNEIGWVDWSLDEG-DDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGL 587 (688)
T ss_pred HHHcCCCceeeecHhhccCCCCCCCCccCCCcccccCcccccc-cHHHHHHHHHHHHHHHhCchhcccccccCCcccCCC
Confidence 9999999999999999999999999999999999999997553 45899999999999999999999887642
Q ss_pred Cceeeec--------cccCCCCCcEEEEEEecCC-------CCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCC
Q 006791 539 NDVTWHE--------DNWDNYDSKFLAFTLHDNN-------GADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESP 603 (631)
Q Consensus 539 ~~~~~~~--------~~~~~~~~~vla~~r~~~~-------~~~~lvv~N~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~ 603 (631)
.++.|.. +.|......+|+|...... .+.++|++|++.+++++.||... ..|..+++|+....
T Consensus 588 ~~v~~~~~~G~~~~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~~~--~~w~~~~dt~~~~~ 665 (688)
T TIGR02100 588 KDVTWLNADGEPMTEEDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGPEPVPFKLPGGG--GRWELVLDTADEEA 665 (688)
T ss_pred CceEEeCCCCCcCChhhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCCCCeEEECCCCC--CcEEEEecCCCCCC
Confidence 4688853 3575555799999997531 14699999999999999999642 57999999975432
Q ss_pred CCCCCCCCCCCCCeEEEcCcEEEEEEe
Q 006791 604 DDIVPEGAAGTGSTYNLSPYSSILLEA 630 (631)
Q Consensus 604 ~~~~~~~~~~~~~~~~l~p~s~~vl~~ 630 (631)
..+. ...+..+.|+|+|++||..
T Consensus 666 ~~~~----~~~~~~~~v~~~s~~vl~~ 688 (688)
T TIGR02100 666 PGIH----LDAGQEAELPARSVLLLRR 688 (688)
T ss_pred cccc----ccCCCEEEEcCCEEEEEeC
Confidence 2211 1234679999999999963
No 2
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.1e-106 Score=871.76 Aligned_cols=598 Identities=47% Similarity=0.815 Sum_probs=522.0
Q ss_pred CCCcCCCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCcc----------------
Q 006791 8 PRVNKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDAS---------------- 71 (631)
Q Consensus 8 ~~~~~~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~---------------- 71 (631)
|...+.|.+|++.+|+++ .|..|.|+++++..+..|++|++.++.+||||+++++...++...
T Consensus 62 ~~~~~~G~iw~~~~p~~~-~g~~y~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~ 140 (697)
T COG1523 62 PYDGELGAIWHLWLPGAK-PGQVYGYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPD 140 (697)
T ss_pred ccCCccccEEEEEcCCCc-eeeEEEEecCCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCcc
Confidence 445668889999999976 899999999998888899999999999999999998876443100
Q ss_pred -chhccccccccccCCCCCCCCCCCCCCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhh--chHHHHcCCceE
Q 006791 72 -AKLSKFLGTYEFESLPFDWGDNYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK--IPHLLELGINAV 148 (631)
Q Consensus 72 -~~~~~~~~~~~~~~~~~~w~~~~~~p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~--LdyLk~LGvt~I 148 (631)
........+++. ...|+|..+ ++|..+|+++||||+|||+||. ..++++...+|||.|+++. |+|||+||||||
T Consensus 141 ~~~~~~~~Ksvv~-~~~~~w~~~-~~~~~p~~~~vIYE~HVr~fT~-~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaV 217 (697)
T COG1523 141 RDSADPYPKSVVI-DPLFDWEND-KPPRIPWEDTVIYEAHVRDFTQ-LHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAV 217 (697)
T ss_pred ccccccCCceEEe-ccccccccC-CCCCCCccceEEEEeeeccccc-CCCCCchhhccceehhccccHHHHHHHhCCceE
Confidence 000111122222 223899876 6678889999999999999998 6778899999999999999 999999999999
Q ss_pred EECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccC
Q 006791 149 ELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 228 (631)
Q Consensus 149 ~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~ 228 (631)
+||||+++.......++ ...+||||+|.+||+|+++|.+.|. |..|+.|||.||+++|++||+||||||||||++
T Consensus 218 eLLPV~~~~~~~~l~~~----gl~n~WGYdP~~fFAp~~~Yss~p~-p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae 292 (697)
T COG1523 218 ELLPVFDFYDEPHLDKS----GLNNNWGYDPLNFFAPEGRYASNPE-PATRIKEFKDMVKALHKAGIEVILDVVFNHTAE 292 (697)
T ss_pred EEecceEEecccccccc----ccccccCCCcccccCCCccccCCCC-cchHHHHHHHHHHHHHHcCCEEEEEEeccCccc
Confidence 99999999665443322 3479999999999999999999988 999999999999999999999999999999998
Q ss_pred CCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCC
Q 006791 229 ADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGS 308 (631)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~ 308 (631)
++...|-+ +|+++++.+||+.+++|.+.|++|||++||+++|+||++|+|+|+||++||||||||||+|+.+.++++..
T Consensus 293 ~~~~g~t~-~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~ 371 (697)
T COG1523 293 GNELGPTL-SFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLF 371 (697)
T ss_pred ccCcCccc-ccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhcccccccc
Confidence 65555644 89999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred CCCChHHHHHHHhccccCCCeEeeccCCCC-CccccCCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCccc
Q 006791 309 PLNAPPLIRAIAKDAILSRCKIIAEPWDCR-GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDL 387 (631)
Q Consensus 309 ~~~~~~~l~~i~~~~~~~~~~li~E~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 387 (631)
.. .+.++..+..+++...+++|||+|+.+ +.|++|.|+....|++||+.|++.+++|+.|+.+....|+.++.++.+.
T Consensus 372 ~~-~~~l~~~~~~~p~l~~~kliAepwD~g~~gyqvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS~d~ 450 (697)
T COG1523 372 DI-NANLFLAGEGDPVLSGVKLIAEPWDIGPGGYQVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGSSDL 450 (697)
T ss_pred cc-CcchhhhccCCccccCceeeecchhhcCCCcccccCCCccchhhhCCcccccccceeeCCCccHHHHHHHhhcCcch
Confidence 33 456888888888999999999999888 7899999997778999999999999999999999999999999999999
Q ss_pred cccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 006791 388 YRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALM 467 (631)
Q Consensus 388 ~~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~ 467 (631)
|....+.|.++||||++||++||+|+++++.|||+++||.||+|++.|+|||||++|.+.++.+...+.++.+.+++.++
T Consensus 451 ~~~~~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tll 530 (697)
T COG1523 451 YKRNGRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLL 530 (697)
T ss_pred hhccCCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHH
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceeeecccccccccCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCCCCcCCCCC----Cceee
Q 006791 468 VSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNI----NDVTW 543 (631)
Q Consensus 468 ~~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~----~~~~~ 543 (631)
+++|+||+-+|||+|+++.||+|+||+++++++++|+. .....+++|+++||+|||++|+|+...+... .++.|
T Consensus 531 lsqG~pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~~--~~~~~l~~f~~~lIaLRk~~~af~~~~f~~~~~~~~~i~~ 608 (697)
T COG1523 531 LSQGTPMLLAGDEFGRTQYGNNNAYCQDNEINWLDWST--EANNDLVEFTKGLIALRKAHPAFRRRSFFEGKRGVKDITW 608 (697)
T ss_pred hhcCCcccccccccccccccccccccCCcccceeccCc--cccHHHHHHHHHHHHHhhhcchhcccchhhccCCCcccce
Confidence 99999999999999999999999999999999999993 3456999999999999999999999877663 46776
Q ss_pred e--------ccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCC
Q 006791 544 H--------EDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTG 615 (631)
Q Consensus 544 ~--------~~~~~~~~~~vla~~r~~~~~~~~lvv~N~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (631)
. ...|.......+++..... ..+++|++|...++..+.||... +.|..++++...... ..
T Consensus 609 ~~~~g~~~~~~~w~~~~~~~l~~~l~~~-~~~~lv~~N~~~~~~~~~lp~~~--~~~~~~~~~~~~~~~---------~~ 676 (697)
T COG1523 609 LNWNGIPLTQDDWNNGFTGALAVVLDGD-KERLLVLINATAEPVEFELPEDE--GKWAGLVDTSTPPGF---------DI 676 (697)
T ss_pred eccCCeeechhcccCCCCceEEEEecCC-CccEEEEecCCccccceeccccc--CcceeeecccCCCCc---------cc
Confidence 5 2456555578888888764 57899999999999999999853 679988877654321 11
Q ss_pred CeEEEcCcEEEEEEe
Q 006791 616 STYNLSPYSSILLEA 630 (631)
Q Consensus 616 ~~~~l~p~s~~vl~~ 630 (631)
..+.+++.|+.||..
T Consensus 677 ~~~~~~~~s~~vl~~ 691 (697)
T COG1523 677 REVSLPGRSVLVLTR 691 (697)
T ss_pred ceeecCCcEEEEEee
Confidence 268899999999874
No 3
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=3e-104 Score=870.79 Aligned_cols=585 Identities=40% Similarity=0.654 Sum_probs=486.2
Q ss_pred CcCCCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCc--------cc-hhc-cccc
Q 006791 10 VNKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDA--------SA-KLS-KFLG 79 (631)
Q Consensus 10 ~~~~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~--------~~-~~~-~~~~ 79 (631)
.+++++||+++|+++ .+|.+|+|+|+++..|..|++|++.++++||||+++.+...++.. .. ... ....
T Consensus 50 ~~~~~gvW~~~v~~~-~~G~~Y~yrv~g~~~p~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (658)
T PRK03705 50 PARSGDIWHGYLPGA-RPGLRYGYRVHGPWQPAQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPK 128 (658)
T ss_pred eeccCCEEEEEECCC-CCCCEEEEEEccccCcccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCc
Confidence 455678999999996 589999999998766778999999899999999999764321100 00 000 0111
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHh--hchHHHHcCCceEEECCCcccc
Q 006791 80 TYEFESLPFDWGDNYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQ--KIPHLLELGINAVELLPVFEFD 157 (631)
Q Consensus 80 ~~~~~~~~~~w~~~~~~p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~--~LdyLk~LGvt~I~L~Pi~~~~ 157 (631)
+++. ..+|+|.++ .+|..+|+++||||+||++|+..++ +.+...+|+|+|+++ +|||||+||||+||||||+++.
T Consensus 129 ~~v~-d~~~~W~~~-~~p~~~~~~~vIYE~hvr~ft~~~~-~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~ 205 (658)
T PRK03705 129 CVVV-DDHYDWEDD-APPRTPWGSTVIYEAHVRGLTYLHP-EIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFA 205 (658)
T ss_pred eEEe-cCCCCCCCC-CCCCCCccccEEEEEehhhhcccCC-CCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCC
Confidence 2222 357999875 3567789999999999999997543 233456799999997 4999999999999999999985
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCccc
Q 006791 158 EMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT 237 (631)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~ 237 (631)
+...... ....++|||+|.+||+|+++|||.+. .+++|||+||++||++||+||||||+|||+.....+|++
T Consensus 206 ~~~~~~~----~g~~~ywGYd~~~yfa~d~~ygt~~~---~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~- 277 (658)
T PRK03705 206 SEPRLQR----MGLSNYWGYNPLAMFALDPAYASGPE---TALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTL- 277 (658)
T ss_pred Ccccccc----cccccccCcccccccccccccCCCCc---chHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcch-
Confidence 4221110 01247899999999999999999643 567999999999999999999999999999865566665
Q ss_pred ccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHH
Q 006791 238 SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIR 317 (631)
Q Consensus 238 ~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~ 317 (631)
.+++.+++.||..++.+.+.++++|+++||+++|+|+++|+++++||+++|||||||||+|.+|.+.. +.+ ...++++
T Consensus 278 ~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~-~~~-~~~~~~~ 355 (658)
T PRK03705 278 SLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTP-EFR-QDAPLFT 355 (658)
T ss_pred hcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCc-ccc-hhhHHHH
Confidence 57778888888888888899999999999999999999999999999999999999999999998653 222 2356889
Q ss_pred HHHhccccCCCeEeeccCCCC-CccccCCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCC
Q 006791 318 AIAKDAILSRCKIIAEPWDCR-GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPY 396 (631)
Q Consensus 318 ~i~~~~~~~~~~li~E~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 396 (631)
+++.++++++++||||+|+.+ +.++.+.|+. .|++||+.|++.|+.|+.++......++.++.++.++|....+.|.
T Consensus 356 ai~~d~vl~~~~ligE~Wd~~~~~~~~g~~~~--~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~ 433 (658)
T PRK03705 356 AIQNDPVLSQVKLIAEPWDIGPGGYQVGNFPP--PFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPS 433 (658)
T ss_pred HHhhCccccceEEEEecccCCCChhhhcCCCc--ceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCC
Confidence 999889999999999999986 5677787773 5799999999999999998888888999999999998887777899
Q ss_pred cceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCceeee
Q 006791 397 HSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMML 476 (631)
Q Consensus 397 ~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~pGiP~iy 476 (631)
+++|||++||++||+|+++++.+||++||+.|+||++.|+|||||.+|.+.++.+...+.+++|+++++||++||+||||
T Consensus 434 ~siNyv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~ 513 (658)
T PRK03705 434 ASINLVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLL 513 (658)
T ss_pred eEEEEEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCCCCcCCC-C-CCceeeec--------c
Q 006791 477 MGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFL-N-INDVTWHE--------D 546 (631)
Q Consensus 477 ~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~~~~~~~~Li~lR~~~~~l~~g~~~-~-~~~~~~~~--------~ 546 (631)
||||+|+++.|++|+||+++.+++|+|+.. ..++++|+|+||+|||+||+|+..++. . ...+.|+. .
T Consensus 514 ~GdE~grtq~G~nN~y~~~~~i~~~dW~~~---~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 590 (658)
T PRK03705 514 AGDEHGHSQHGNNNAYCQDNALTWLDWSQA---DRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSAD 590 (658)
T ss_pred hhHHhccCCCCCCCCccCCCCccccccchh---hhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChh
Confidence 999999999999999999999999999964 258999999999999999999998872 2 24678863 2
Q ss_pred ccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCcEEE
Q 006791 547 NWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSI 626 (631)
Q Consensus 547 ~~~~~~~~vla~~r~~~~~~~~lvv~N~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~ 626 (631)
.|.. ...+++|... +.++|++|.+..+++++||. +.|..+++++... . . .....+.++++|++
T Consensus 591 ~w~~-~~~~~~~~~~----~~~~v~~N~~~~~~~~~lp~----~~w~~~~~~~~~~--~----~--~~~~~~~~~~~~~~ 653 (658)
T PRK03705 591 EWQQ-GPKQLQILLS----DRWLIAINATLEVTEIVLPE----GEWHAIPPFAGED--N----P--VITAVWHGPAHGVC 653 (658)
T ss_pred HhCC-cceEEEEEEC----CCEEEEECCCCCCeEEECCC----cceEEEEccCCCc--c----c--ccCceeeecCcEEE
Confidence 3522 3567888773 46999999999999999996 4799996544321 1 1 22456889999999
Q ss_pred EEEe
Q 006791 627 LLEA 630 (631)
Q Consensus 627 vl~~ 630 (631)
||..
T Consensus 654 ~~~~ 657 (658)
T PRK03705 654 VFQR 657 (658)
T ss_pred EEec
Confidence 9975
No 4
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=4.8e-93 Score=828.80 Aligned_cols=552 Identities=39% Similarity=0.672 Sum_probs=460.9
Q ss_pred CcCCCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccC-----Ccc---c---hhccc-
Q 006791 10 VNKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFG-----DAS---A---KLSKF- 77 (631)
Q Consensus 10 ~~~~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~-----~~~---~---~~~~~- 77 (631)
.+++|+||+++|+++. +|..|+|+|+++..+..|++|++.++++||||+++.+...+. ... . ..+.+
T Consensus 56 ~~~~g~vW~~~i~~~~-~g~~Ygyrv~g~~~p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~ 134 (1221)
T PRK14510 56 PGRTGDVWHGFIVGVG-PGARYGNRQEGPGGPGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVL 134 (1221)
T ss_pred CCCcCCEEEEEEccCC-CCcEEEEEeccCCCcccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCccc
Confidence 4568889999999864 899999999998888889999999999999999998644221 100 0 00111
Q ss_pred -cccccccCCCCCCCCCCCCCCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHH--hhchHHHHcCCceEEECCCc
Q 006791 78 -LGTYEFESLPFDWGDNYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLI--QKIPHLLELGINAVELLPVF 154 (631)
Q Consensus 78 -~~~~~~~~~~~~w~~~~~~p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~--~~LdyLk~LGvt~I~L~Pi~ 154 (631)
..+++. .+|+|.++ .+|..+|+++||||+||++|+... +.+....+|+|++|. ++|+|||+||||+||||||+
T Consensus 135 ~pk~vv~--~~~~W~~~-~~~~~~~~d~vIYE~hvr~ft~~~-~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~ 210 (1221)
T PRK14510 135 VPKVVVP--TPFTWAPR-SPLHGDWDDSPLYEMNVRGFTLRH-DFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIF 210 (1221)
T ss_pred Cccceee--cccccCCC-CCCCCCcccCeEEEEccchhhccC-CCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCcc
Confidence 112222 27999865 456678999999999999999632 233334568999998 66999999999999999999
Q ss_pred ccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCC
Q 006791 155 EFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYA--AGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDA 232 (631)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yG--t~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~ 232 (631)
++.+...... ....+||||++.|||+|+++|| +. +|||+||++||++||+||||||||||+.++..
T Consensus 211 ~~~~~~~~~~----~g~~~yWGY~~~~yfa~dp~yg~~~~--------~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~ 278 (1221)
T PRK14510 211 ASVDEHHLPQ----LGLSNYWGYNTVAFLAPDPRLAPGGE--------EEFAQAIKEAQSAGIAVILDVVFNHTGESNHY 278 (1221)
T ss_pred ccCccccccc----ccCcCcCCCCCCCCCCcChhhccCcH--------HHHHHHHHHHHHCCCEEEEEEccccccCCCCC
Confidence 9844321111 1235789999999999999999 65 99999999999999999999999999986444
Q ss_pred CCcccccCCCCCCcCeeeC--CCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCC
Q 006791 233 NPYTTSFRGIDNKVYYMVD--GTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPL 310 (631)
Q Consensus 233 ~~~~~~~~~~~~~~yy~~~--~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~ 310 (631)
.|.+ .+.+.++..||+.+ ..+.+.+++||++.+|+++|+|+++|+++++||++ |||||||||+|..|.+...+++.
T Consensus 279 ~p~~-~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~ 356 (1221)
T PRK14510 279 GPTL-SAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFID 356 (1221)
T ss_pred CCcc-cccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHH
Confidence 4422 56677778888875 34668899999999999999999999999999997 99999999999999655444455
Q ss_pred CChHHHHHHHhccccCCCeEeeccCCCC-CccccCCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCccccc
Q 006791 311 NAPPLIRAIAKDAILSRCKIIAEPWDCR-GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYR 389 (631)
Q Consensus 311 ~~~~~l~~i~~~~~~~~~~li~E~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 389 (631)
...+.++++.++.+..++++|||+|+.+ +.++.+.|+.. |++||+.|++.++.|+.|+.+....++.++.++.+.|.
T Consensus 357 ~~~~~l~ai~~d~~l~~~~ligE~Wd~~~~~~~~g~f~~~--~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~ 434 (1221)
T PRK14510 357 EFRQFLKAMDQDPVLRRLKMIAEVWDDGLGGYQYGKFPQY--WGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFP 434 (1221)
T ss_pred HHHHHHHHhCCCcCcccCcEEEecccCCCCccccCCCCcc--eeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcC
Confidence 5667888888888888899999999986 45777888753 78999999999999999998888999999999999887
Q ss_pred cCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhc
Q 006791 390 VNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVS 469 (631)
Q Consensus 390 ~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~ 469 (631)
...+.+..++|||+|||++|+.|+++++.|||++|||.|+||+++|+|||||++|.+.++.+..++.+++|++++++||+
T Consensus 435 ~~~~~~~~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s 514 (1221)
T PRK14510 435 HRRRNFSRSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSF 514 (1221)
T ss_pred ccCCCcccceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 66667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeecccccccccCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCCCCcCCCCC--------Cce
Q 006791 470 QGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNI--------NDV 541 (631)
Q Consensus 470 pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~--------~~~ 541 (631)
|||||||||||+|+++.|++|.||+++++++|+|+.. ..++++|+|+||+|||+||+|+.+++... .+|
T Consensus 515 ~GiP~Iy~GdE~g~tq~Gn~n~y~~~~~r~~~~W~~~---~~~l~~f~k~Li~lRk~~~~L~~g~~~~~~~~~~~~~~dv 591 (1221)
T PRK14510 515 PGVPMLYYGDEAGRSQNGNNNGYAQDNNRGTYPWGNE---DEELLSFFRRLIKLRREYGVLRQGEFSSGTPVDASGGKDV 591 (1221)
T ss_pred CCCcEEecchhcccccCCCCCCCCCCCccccCCcccc---cHHHHHHHHHHHHHHHhChhhccCccccCcccccCCCCCE
Confidence 9999999999999999999999999999999999874 34899999999999999999999988643 468
Q ss_pred eeec--------cccCCCCCcEEEEEEecCC-----CCeEEEEEeCCCCcEEEEcCC
Q 006791 542 TWHE--------DNWDNYDSKFLAFTLHDNN-----GADIYLAFNAHDFFVKVSLPP 585 (631)
Q Consensus 542 ~~~~--------~~~~~~~~~vla~~r~~~~-----~~~~lvv~N~~~~~~~~~lp~ 585 (631)
.|+. ..|.......+++...... ++.++|++|++..+++|.||.
T Consensus 592 ~w~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~ 648 (1221)
T PRK14510 592 EWLRRKGEQNQDRFWDKRSTEALVAVLNRPAGERQVDDRFAVLLNSHHEELTLHLPE 648 (1221)
T ss_pred EEECCCCCcCChhhcCCCCCCEEEEEEecCCCCCCCCCeEEEEECCCCCCeEEECCh
Confidence 8873 3565555677776664321 247999999999999999995
No 5
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=1.5e-85 Score=728.43 Aligned_cols=513 Identities=30% Similarity=0.501 Sum_probs=397.6
Q ss_pred CCCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCccchhccccccccccCCCCCCC
Q 006791 12 KTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWG 91 (631)
Q Consensus 12 ~~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 91 (631)
..++||+++|+++ ++|..|+|+|++.+. ..+++||||+++...... +.+... ....+++|.
T Consensus 55 ~~~gvw~~~i~~~-~~g~~Y~y~v~~~~~---------~~~~~DPya~~~~~~~~~-------s~v~d~--~~~~~~~w~ 115 (605)
T TIGR02104 55 GENGVWSAVLEGD-LHGYFYTYQVCINGK---------WRETVDPYAKAVTVNGKR-------GAVIDL--ERTNPEGWE 115 (605)
T ss_pred CCCCEEEEEECCC-CCCCEEEEEEEcCCC---------eEEEcCCCcceeccCCCc-------EEEEcc--cccCccCcc
Confidence 4567999999985 589999999986431 136899999998654321 222111 012457887
Q ss_pred CCCCCCCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhh-----------chHHHHcCCceEEECCCcccchhh
Q 006791 92 DNYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK-----------IPHLLELGINAVELLPVFEFDEME 160 (631)
Q Consensus 92 ~~~~~p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~-----------LdyLk~LGvt~I~L~Pi~~~~~~~ 160 (631)
.+..++..+++++|||||||++|+.++++++.. +|+|+|++++ |||||+||||+||||||+++.+..
T Consensus 116 ~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~--~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~ 193 (605)
T TIGR02104 116 KDHRPRLENPEDAIIYELHIRDFSIHENSGVKN--KGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVD 193 (605)
T ss_pred cccCCCCCChhHcEEEEEecchhccCCCCCcCC--CCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccc
Confidence 654345567899999999999999988877743 6999998876 999999999999999999985432
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccC
Q 006791 161 FQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFR 240 (631)
Q Consensus 161 ~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~ 240 (631)
... + ....+|||++.+||+|+++||++|..+..+++|||+||++||++||+||||||+||++... +. .|+
T Consensus 194 ~~~---~--~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~--~~---~f~ 263 (605)
T TIGR02104 194 EED---P--NNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSRE--ES---PFE 263 (605)
T ss_pred ccc---C--CCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCC--CC---ccc
Confidence 110 1 1135699999999999999999887787889999999999999999999999999998532 11 355
Q ss_pred CCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHH
Q 006791 241 GIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIA 320 (631)
Q Consensus 241 ~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~ 320 (631)
+..+.+||+.++.+.+.++++|++++|+++|+||++|+++++||+++|||||||||+|.++..+ ++++++
T Consensus 264 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~----------~~~~~~ 333 (605)
T TIGR02104 264 KTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIE----------TMNEIR 333 (605)
T ss_pred CCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHH----------HHHHHH
Confidence 5555566666777888889999999999999999999999999999999999999999888544 455554
Q ss_pred h--ccccCCCeEeeccCCCCCcccc------CCCCCccchhhhhhhhHHHHH---------HHHcCCCCcHHHHHHHhhC
Q 006791 321 K--DAILSRCKIIAEPWDCRGLYLV------GKFPNWDRWAEWNGKYRDDLR---------KFIKGDPGMKGILATRISG 383 (631)
Q Consensus 321 ~--~~~~~~~~li~E~w~~~~~~~~------~~~~~~~~~~~~n~~f~~~i~---------~~~~~~~~~~~~~~~~l~~ 383 (631)
. +...|++++|||+|+.+..... +......+++.||+.|++.++ .|+.|.......++..+.+
T Consensus 334 ~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~ 413 (605)
T TIGR02104 334 KALNKIDPNILLYGEGWDLGTPLPPEQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILG 413 (605)
T ss_pred HHHHhhCCCeEEEEccCCCCCCcchhhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeC
Confidence 4 4568899999999987632211 111122346899999999998 4555555555677777777
Q ss_pred Ccccc--ccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHH
Q 006791 384 SSDLY--RVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKN 461 (631)
Q Consensus 384 ~~~~~--~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 461 (631)
+...+ ......|.+++||++|||++|+.|++++..+.. . ...+.+++|+
T Consensus 414 ~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~--------------------------~---~~~~~~r~rl 464 (605)
T TIGR02104 414 SIELDAVKPSALDPSQSINYVECHDNHTLWDKLSLANPDE--------------------------T---EEQLKKRQKL 464 (605)
T ss_pred ChhhcccccccCChhheEEEEEecCCCCHHHHHHhhCCCC--------------------------C---HHHHHHHHHH
Confidence 65444 123456789999999999999999887532210 0 2235678899
Q ss_pred HHHHHHhcCCceeeecccccccccCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCCCCcCCCCCCce
Q 006791 462 FHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDV 541 (631)
Q Consensus 462 a~~~l~~~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~ 541 (631)
|++++||+|||||||||||+|+++.+++|+|++++++++|+|+..+. ..++++++|+||+|||++|+|+.+++..+
T Consensus 465 a~alllts~GiP~iy~GdE~g~s~~g~~n~y~~~d~~~~ldW~~~~~-~~~~~~~~~~Li~lRk~~pal~~~~~~~i--- 540 (605)
T TIGR02104 465 ATAILLLSQGIPFLHAGQEFMRTKQGDENSYNSPDSINQLDWDRKAT-FKDDVNYIKGLIALRKAHPAFRLSSAEDI--- 540 (605)
T ss_pred HHHHHHHcCCCceeecchhhhccCCCCCCCccCCCcccccCcccccc-chHHHHHHHHHHHHHhhCccccCCChhhh---
Confidence 99999999999999999999999999999999999999999997553 44899999999999999999999886432
Q ss_pred eeeccccCCCCCcEEEEEEecCCC----CeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCC
Q 006791 542 TWHEDNWDNYDSKFLAFTLHDNNG----ADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLE 601 (631)
Q Consensus 542 ~~~~~~~~~~~~~vla~~r~~~~~----~~~lvv~N~~~~~~~~~lp~~~~~~~~~~~~~~~~~ 601 (631)
.++...+...++.+++|.|....+ +.++|++|++..++++.||. .+.|+.++++...
T Consensus 541 ~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv~N~s~~~~~v~lp~---~~~w~~~~~~~~~ 601 (605)
T TIGR02104 541 RKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVIHNANPEPVDIQLPS---DGTWNVVVDNKNA 601 (605)
T ss_pred cceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEEEeCCCCCeEEECCC---CCCEEEEECCCcC
Confidence 222111122357899999986422 47999999999999999985 3689999988653
No 6
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=8.6e-84 Score=731.76 Aligned_cols=566 Identities=24% Similarity=0.381 Sum_probs=401.3
Q ss_pred cCCCCEEEEEEcCC-----CCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcc-cCCc--cchhcccccccc
Q 006791 11 NKTGDIWHICIEDL-----PRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRH-FGDA--SAKLSKFLGTYE 82 (631)
Q Consensus 11 ~~~g~vw~~~i~~~-----~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~-~~~~--~~~~~~~~~~~~ 82 (631)
...++||+++++++ +++|++|+|+|++.. ...+++||||+++..... .... ....+.+.....
T Consensus 362 ~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~---------~~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~ 432 (1111)
T TIGR02102 362 KGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGG---------DKVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSS 432 (1111)
T ss_pred cCCCCEEEEEECCcccCcccCCCceEEEEEECCC---------ceEEEeChhheEEeccCcccccccCCCCceEEEcCcc
Confidence 45667999999952 457999999998642 235789999999864221 0000 000111111101
Q ss_pred ccCCCCCCCCCCCCCCCCCCCceEEEEecCcccCCCCCCCCC-CCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhh
Q 006791 83 FESLPFDWGDNYKLPNIPEKDLVIYEMNVRAFTGDESSGLDP-EIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 161 (631)
Q Consensus 83 ~~~~~~~w~~~~~~p~~~~~~~iiYei~v~~F~~~~~~~~~~-~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~ 161 (631)
.....|+|.+ .++..+++++||||+|||+|+...+++... ..+|+|+||+++|||||+|||||||||||+++...++
T Consensus 433 ~~p~~~~~~~--~~~~~~~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e 510 (1111)
T TIGR02102 433 LGPQELDFAK--IENFKKREDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNE 510 (1111)
T ss_pred cCcccccccc--ccccCCccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccc
Confidence 1122466653 344556899999999999999655544322 2469999999999999999999999999998633221
Q ss_pred hh---cCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcc
Q 006791 162 QR---RRNP--RDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYT 236 (631)
Q Consensus 162 ~~---~~~~--~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~ 236 (631)
.. ...+ .....++|||+|.+||+|+++||++|.+|..|++|||+||++||++||+||||||||||+. .+
T Consensus 511 ~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~---~~--- 584 (1111)
T TIGR02102 511 FKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAK---VY--- 584 (1111)
T ss_pred cccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccc---cc---
Confidence 10 0000 0001246999999999999999999888989999999999999999999999999999986 33
Q ss_pred cccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHH
Q 006791 237 TSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLI 316 (631)
Q Consensus 237 ~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l 316 (631)
.|+++++.+|++.+..+...+. .|++++++++++||++|+++++||+++|||||||||+|+++...+ .....
T Consensus 585 -~f~~~~p~Yy~~~~~~G~~~~~-~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~------~~~~~ 656 (1111)
T TIGR02102 585 -IFEDLEPNYYHFMDADGTPRTS-FGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAAS------IEIAY 656 (1111)
T ss_pred -cccccCCCceEeeCCCCCcccc-cCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHH------HHHHH
Confidence 3556665555555555554443 357899999999999999999999999999999999998765442 11122
Q ss_pred HHHHhccccCCCeEeeccCCCC---CccccCCCC-Ccc----chhhhhhhhHHHHHH---------HHcCCCCcHHHHHH
Q 006791 317 RAIAKDAILSRCKIIAEPWDCR---GLYLVGKFP-NWD----RWAEWNGKYRDDLRK---------FIKGDPGMKGILAT 379 (631)
Q Consensus 317 ~~i~~~~~~~~~~li~E~w~~~---~~~~~~~~~-~~~----~~~~~n~~f~~~i~~---------~~~~~~~~~~~~~~ 379 (631)
+++ ....|+++||||+|+.. ..+..+.++ .+. .++.||+.+|+.++. |+.|.......+..
T Consensus 657 ~~l--~~~dP~~~liGE~W~~~~g~~~~~~~~~~~~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~ 734 (1111)
T TIGR02102 657 KEA--KAINPNIIMIGEGWRTYAGDEGDPVQAADQDWMKYTETVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFK 734 (1111)
T ss_pred HHH--HHhCcCEEEEEecccccCCCCcccccccchhhHhcCCcccEecHHHHHHHhcccccccccccccCCcccHHHHHH
Confidence 222 24578999999999862 122222222 111 123444444444441 22233334455667
Q ss_pred HhhCCccccccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHH
Q 006791 380 RISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQM 459 (631)
Q Consensus 380 ~l~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (631)
.+.++...+. ...|.++||||+|||++||+|++++..+++..+++. + ....++.
T Consensus 735 ~i~g~~~~~~--~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~--------------------~----~~~~~r~ 788 (1111)
T TIGR02102 735 NIKAQPHNFE--ADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAEN--------------------Q----EEIHRRI 788 (1111)
T ss_pred hhcCCccccc--cCCcccEEEEEecCCCCchHhhhhhccccCcccccc--------------------h----HHHHHHH
Confidence 7777655442 357889999999999999999999988887655431 0 1124667
Q ss_pred HHHHHHHHhcCCceeeecccccccccCCCCC----------------------------------CCCCCCCCCcccccc
Q 006791 460 KNFHLALMVSQGTPMMLMGDEYGHTRYGNNN----------------------------------SYGHDTAINNFQWGQ 505 (631)
Q Consensus 460 ~~a~~~l~~~pGiP~iy~G~E~g~~~~g~~n----------------------------------~y~~~~~~~~~~W~~ 505 (631)
|++++++||++||||||+||||++++.|++| +|++++.+|+++|++
T Consensus 789 rla~~llllSQGiPfi~aGqEf~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~ 868 (1111)
T TIGR02102 789 RLGNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEK 868 (1111)
T ss_pred HHHHHHHHHhCcHhhhhcchhhhcccCCCcccccccccccccccccccccccccccccccccccccccCCCccceecccc
Confidence 7888999999999999999999999999844 555578999999998
Q ss_pred ccccc-----chHHHHHHHHHHHHhcCCCCCCcCCCCC-Cceeeecc----ccCCCCCcEEEEEEecCCCCeEEEEEeCC
Q 006791 506 LETKK-----NSHYRFFSEVIKFRQSRRVFGREDFLNI-NDVTWHED----NWDNYDSKFLAFTLHDNNGADIYLAFNAH 575 (631)
Q Consensus 506 ~~~~~-----~~~~~~~~~Li~lR~~~~~l~~g~~~~~-~~~~~~~~----~~~~~~~~vla~~r~~~~~~~~lvv~N~~ 575 (631)
.+... ..+++|+|.||+|||++|+|+.++...+ ..+.|+.. .| .....+++|...+..++.++|++|.+
T Consensus 869 ~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~~~~i~~~v~~~~~~g~~~~-~~~~~~ia~~~~~~~~~~~~V~~Na~ 947 (1111)
T TIGR02102 869 ATDADAYPINNKTRDYTAGLIELRRSTDAFRLGSKALVDRKVTLITIPGQNEI-EEEDLVVAYQIVATNGDIYAVFVNAD 947 (1111)
T ss_pred cccccccchhHHHHHHHHHHHHHHhcCccccccchhhhcCcEEEECCCCCccc-ccCCcEEEEEEecCCCCeEEEEECCC
Confidence 75431 4899999999999999999999988544 35788743 23 23478999998765456899999999
Q ss_pred CCcEEEEcCCC-CCCCCeEEEEeCCCCCCCCCCC-CCCCCCCCeEEEcCcEEEEEEe
Q 006791 576 DFFVKVSLPPP-PPKRQWFRVVDTNLESPDDIVP-EGAAGTGSTYNLSPYSSILLEA 630 (631)
Q Consensus 576 ~~~~~~~lp~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~p~s~~vl~~ 630 (631)
..++++.||.. +....|..+++........+.. .+.......++|+|+|++||+.
T Consensus 948 ~~~~~~~lp~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~s~~V~~~ 1004 (1111)
T TIGR02102 948 DKARTLTLGEDYAHLTVGEVVVDAEQAGVTGIAEPKGVELTAEGLKLDPLTAAVVRV 1004 (1111)
T ss_pred CCCEEEECCCCcccccceEEEEcccccCcccccccccccccCCeEEEcCcEEEEEEe
Confidence 99999999973 1224689899876543222221 1222334689999999999975
No 7
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=2.7e-82 Score=703.46 Aligned_cols=568 Identities=24% Similarity=0.396 Sum_probs=400.9
Q ss_pred cCCCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCccchhccccccccccCCCCCC
Q 006791 11 NKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDW 90 (631)
Q Consensus 11 ~~~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 90 (631)
.++++||++++++ .++|.+|+|+|+... |..|.. ...+++||||+++...... +.+.........+.+|
T Consensus 256 ~~~~GVWsv~v~~-~~~G~~Y~Y~V~v~~-p~~g~~--~~~~v~DPYA~als~ng~~-------S~vvDl~~~~~~p~gW 324 (970)
T PLN02877 256 KESNGVWSVEGPK-SWEGCYYVYEVSVYH-PSTGKV--ETCYANDPYARGLSADGRR-------TLLVDLDSDDLKPEGW 324 (970)
T ss_pred cCCCCEEEEEecc-CCCCCeeEEEEeecc-cCCCcc--cccccCCccceEEecCCCc-------eEEECCccccCCChhh
Confidence 3567799999998 579999999998532 222322 2346899999998654321 1111111111245688
Q ss_pred CCC--CCCCCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhh-------chHHHHcCCceEEECCCcccchhhh
Q 006791 91 GDN--YKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK-------IPHLLELGINAVELLPVFEFDEMEF 161 (631)
Q Consensus 91 ~~~--~~~p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~-------LdyLk~LGvt~I~L~Pi~~~~~~~~ 161 (631)
... ..++..+++++||||+|||+|+..++ +++..++|+|.|++++ |+|||+||||||+|||+|++.+.++
T Consensus 325 ~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~-sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE 403 (970)
T PLN02877 325 DNLAKEKPCLLSFSDISIYELHVRDFSANDE-TVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDD 403 (970)
T ss_pred hhcccccCccCCCcccEEEEEeccccccCCC-CCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCccc
Confidence 652 23445678999999999999998764 4566788999999987 5666677999999999999965432
Q ss_pred hhc--------------CCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEE
Q 006791 162 QRR--------------RNP----------RDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEV 217 (631)
Q Consensus 162 ~~~--------------~~~----------~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~V 217 (631)
... ++. .+...++|||+|.+||+|+++|++.|.++ .||.|||+||++||++||+|
T Consensus 404 ~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~-~RI~efk~mV~~lH~~GI~V 482 (970)
T PLN02877 404 EKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGP-CRIIEFRKMVQALNRIGLRV 482 (970)
T ss_pred ccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCc-chHHHHHHHHHHHHHCCCEE
Confidence 110 000 00124899999999999999999988766 79999999999999999999
Q ss_pred EEEeecccccCCCCCCCcc--cccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEE
Q 006791 218 ILDVVYNHTNEADDANPYT--TSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRF 295 (631)
Q Consensus 218 ilDvV~NH~~~~~~~~~~~--~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~ 295 (631)
|||||||||+. .+|+. ..++.+.+.+||+.++.|.+.+ ++|+++.+.+++|||++|+|+++||++|||||||||
T Consensus 483 ImDVVyNHt~~---~g~~~~~s~ld~~vP~YY~r~~~~G~~~n-s~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRF 558 (970)
T PLN02877 483 VLDVVYNHLHS---SGPFDENSVLDKIVPGYYLRRNSDGFIEN-STCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRF 558 (970)
T ss_pred EEEECCccccC---CCCcchhhcccCCCCCceEEECCCCCccc-CCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999986 45544 3466777777777788888888 567788899999999999999999999999999999
Q ss_pred ecccccccCCCCCCCCChHHHHHHHhc--cc-cCCCeEeeccCCCCCccccCCCC-----C--ccchhhhhhhhHHHHHH
Q 006791 296 DLASVLCRGTDGSPLNAPPLIRAIAKD--AI-LSRCKIIAEPWDCRGLYLVGKFP-----N--WDRWAEWNGKYRDDLRK 365 (631)
Q Consensus 296 D~~~~l~~~~~~~~~~~~~~l~~i~~~--~~-~~~~~li~E~w~~~~~~~~~~~~-----~--~~~~~~~n~~f~~~i~~ 365 (631)
|+|+++..+. +....+.+++|..+ .+ .|+++++||+|+.+.......+. + ..+++.||+.+|++|+.
T Consensus 559 Dlmg~i~~~t---m~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkG 635 (970)
T PLN02877 559 DLMGHLMKRT---MVRAKDALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLG 635 (970)
T ss_pred EccccccHHH---HHHHHHHHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcC
Confidence 9999998774 22344456666532 22 37799999999876421111000 0 12578889888888873
Q ss_pred ---H--------HcCCCC--------c-----------HHHHHHHhhCCccc------------------ccc----CCC
Q 006791 366 ---F--------IKGDPG--------M-----------KGILATRISGSSDL------------------YRV----NKR 393 (631)
Q Consensus 366 ---~--------~~~~~~--------~-----------~~~~~~~l~~~~~~------------------~~~----~~~ 393 (631)
| ..|... . ...+...+.|+... |.. ...
T Consensus 636 g~~F~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~ 715 (970)
T PLN02877 636 GSPFGHPLQQGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYAS 715 (970)
T ss_pred CCCCCCcCCCceecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCccccccc
Confidence 2 111000 0 01112233444321 111 123
Q ss_pred CCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCce
Q 006791 394 KPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTP 473 (631)
Q Consensus 394 ~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~pGiP 473 (631)
.|.++|||+++||+.||+|.+.+....+. ....+.++.++++++++|++|||
T Consensus 716 ~P~q~InYvs~HDN~TL~D~l~~~~~~~~----------------------------s~~~r~r~~~la~aiv~lsQGip 767 (970)
T PLN02877 716 SPTETINYVSAHDNETLFDIISLKTPMEI----------------------------SVDERCRINHLATSIIALSQGIP 767 (970)
T ss_pred CHHHheeeeeccCCchHHHHHHhhcCCCC----------------------------CHHHHHHHHHHHHHHHHHhChhh
Confidence 68899999999999999999876432110 02235677889999999999999
Q ss_pred eeecccccccccCCCCCCCCCCCCCCcccccccc-----------cc----------------------cchHHHHHHHH
Q 006791 474 MMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE-----------TK----------------------KNSHYRFFSEV 520 (631)
Q Consensus 474 ~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~-----------~~----------------------~~~~~~~~~~L 520 (631)
+|++|+|++++|.+++|+|++++..|.+||+... .+ -....++||.|
T Consensus 768 F~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~L 847 (970)
T PLN02877 768 FFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNNWGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDL 847 (970)
T ss_pred HHhcchhhhcCCCCCCCCCcCchhhheeccccccCccccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999822 11 02458899999
Q ss_pred HHHHhcCCCCCCcCCCCCC-ceeeeccccCCCCCcEEEEEEecCCC------------CeEEEEEeCCCCcEEEEcCCCC
Q 006791 521 IKFRQSRRVFGREDFLNIN-DVTWHEDNWDNYDSKFLAFTLHDNNG------------ADIYLAFNAHDFFVKVSLPPPP 587 (631)
Q Consensus 521 i~lR~~~~~l~~g~~~~~~-~~~~~~~~~~~~~~~vla~~r~~~~~------------~~~lvv~N~~~~~~~~~lp~~~ 587 (631)
|+|||++|+|+.++...+. .+.|+... .....+||+|...+..+ +.++|++|.+.+++++++|...
T Consensus 848 i~lRks~plFrl~t~~~I~~~v~F~~~g-~~~~~gvi~~~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~~~~~~~~~~~~ 926 (970)
T PLN02877 848 LRIRYSSPLFRLRTANAIQERVRFHNTG-PSSIPGVIVMSIEDGHEGVPGLSQLDPIYSRIVVIFNARPTEVSFESPALK 926 (970)
T ss_pred HHHHhcCcccCCCCHHHHHhhcEEeccC-CCcCCCEEEEEEcCCCCccccccccccccCcEEEEEcCCCccEEEeccccc
Confidence 9999999999999876543 46776421 12346999999977421 4699999999999999998732
Q ss_pred C-CCCeEEEEeCCCCCCCCCCCC-CCCCCCCeEEEcCcEEEEEEe
Q 006791 588 P-KRQWFRVVDTNLESPDDIVPE-GAAGTGSTYNLSPYSSILLEA 630 (631)
Q Consensus 588 ~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~p~s~~vl~~ 630 (631)
. +.+.+.|.. .....+... .......+++|||+|++||..
T Consensus 927 ~~~~~l~~v~~---~~~d~~~~~~~~~~~~~~~tvp~~t~aVfv~ 968 (970)
T PLN02877 927 GRTLELHPVQV---MSADEVVKKSVYEASSGVFTVPPRTTAVFVE 968 (970)
T ss_pred ccceeeccccc---ccccceeccceeeccCCeEEecCceEEEEEe
Confidence 1 111222211 000011110 111234689999999999974
No 8
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=4e-80 Score=689.44 Aligned_cols=560 Identities=22% Similarity=0.388 Sum_probs=395.5
Q ss_pred CCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCccchhccccccccccCCCCCCCC
Q 006791 13 TGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGD 92 (631)
Q Consensus 13 ~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 92 (631)
.++||++++++ .++|.+|+|+|+... |..|.. ...+++||||+++..+..++ .+.........+.+|..
T Consensus 171 ~~GVWsv~v~g-~~~G~~Y~Y~V~v~~-p~~G~v--~~~~v~DPYA~als~n~~~S-------~VvDl~~~~~~p~~W~~ 239 (898)
T TIGR02103 171 TSGVWSAEGGS-SWKGAYYRYEVTVYH-PSTGKV--ETYLVTDPYSVSLSANSEYS-------QVVDLNDPALKPEGWDA 239 (898)
T ss_pred CCCEEEEEECc-CCCCCEeEEEEEEec-CCCCeE--CCeEEeCcCcceEcCCCCCe-------EEeCCccccCCCcchhh
Confidence 35699999998 469999999998532 222221 23578999999997554332 22211111224678875
Q ss_pred CC--CCCCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhh-------chHHHHcCCceEEECCCcccchhhhhh
Q 006791 93 NY--KLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK-------IPHLLELGINAVELLPVFEFDEMEFQR 163 (631)
Q Consensus 93 ~~--~~p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~-------LdyLk~LGvt~I~L~Pi~~~~~~~~~~ 163 (631)
.. .++..+++++||||+|||+|+..+++ ++..++|+|.|++++ |+||++||||||+|||||++.+.++..
T Consensus 240 ~~~p~p~~~~~~d~iIYElHVRDFS~~d~s-~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~ 318 (898)
T TIGR02103 240 LAMPKPQLASFADMVLYELHIRDFSANDES-VPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEK 318 (898)
T ss_pred cccccCCcCCCcccEEEEEeccccccCCCC-CCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCcccccc
Confidence 43 22234689999999999999987665 444678999999986 566667899999999999996543211
Q ss_pred c----------------CCC---------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006791 164 R----------------RNP---------------------------------RDHMVNTWGYSTINFFSPMSRYAAGGG 194 (631)
Q Consensus 164 ~----------------~~~---------------------------------~~~~~~~~GY~~~d~~~~d~~yGt~~~ 194 (631)
. +.. .+...++|||+|.+||+|+++|++.|.
T Consensus 319 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~ 398 (898)
T TIGR02103 319 EKVADIQQPFSKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPE 398 (898)
T ss_pred ccccccccchhhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCC
Confidence 0 000 001136899999999999999999874
Q ss_pred CCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCccc-ccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHH
Q 006791 195 GPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT-SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVV 273 (631)
Q Consensus 195 ~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~-~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v 273 (631)
+..||.|||+||++||++||+||||||||||+.. ++... .++...+.+||+.+..+.+.++++| +++++++|+|
T Consensus 399 -g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~---g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~-~d~a~e~~~V 473 (898)
T TIGR02103 399 -GPARIKEFREMVQALNKTGLNVVMDVVYNHTNAS---GPNDRSVLDKIVPGYYHRLNEDGGVENSTCC-SNTATEHRMM 473 (898)
T ss_pred -CchHHHHHHHHHHHHHHCCCEEEEEeeccccccc---CccCcccccccCcHhhEeeCCCCCeecCCCC-cCCCCCCHHH
Confidence 6689999999999999999999999999999974 33222 3555555566666666777787766 5789999999
Q ss_pred HHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHh--ccccCCCeEeeccCCCCCccc-----cCCC
Q 006791 274 MELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK--DAILSRCKIIAEPWDCRGLYL-----VGKF 346 (631)
Q Consensus 274 ~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~--~~~~~~~~li~E~w~~~~~~~-----~~~~ 346 (631)
|++|+++++||+++|||||||||+|++++.++ ++++.+ +.+.|+++++||.|+.+.... .+..
T Consensus 474 rk~iiDsl~~W~~ey~VDGFRfDlm~~~~~~f----------~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~ 543 (898)
T TIGR02103 474 AKLIVDSLVVWAKDYKVDGFRFDLMGHHPKAQ----------MLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQ 543 (898)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEechhhCCHHH----------HHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhc
Confidence 99999999999999999999999999997764 433333 346789999999998653211 1111
Q ss_pred CC--ccchhhhhhhhHHHHHHH--HcC------CCCcH-------------------------HHHHHHhhCCcccc---
Q 006791 347 PN--WDRWAEWNGKYRDDLRKF--IKG------DPGMK-------------------------GILATRISGSSDLY--- 388 (631)
Q Consensus 347 ~~--~~~~~~~n~~f~~~i~~~--~~~------~~~~~-------------------------~~~~~~l~~~~~~~--- 388 (631)
.+ ..+++.||+.+|++|+.- +.. ..++. ..+...+.|+...|
T Consensus 544 ~n~~~~~ig~FnD~~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~ 623 (898)
T TIGR02103 544 LNLAGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLT 623 (898)
T ss_pred cccCCCCeEEeccchhhHhcCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCcccccccc
Confidence 00 125688888888888741 111 01110 01222334433111
Q ss_pred --------------c----cCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHH
Q 006791 389 --------------R----VNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDAS 450 (631)
Q Consensus 389 --------------~----~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~ 450 (631)
. .....|.++|||+++||+.||+|.+.+....+.
T Consensus 624 ~~~g~~~~g~~~~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~~---------------------------- 675 (898)
T TIGR02103 624 DHEGKVVTGEELDYNGAPAGYAADPTETINYVSKHDNQTLWDAISYKAAAET---------------------------- 675 (898)
T ss_pred ccccccccccccccCcCccccccCHHHheeeeeccCCccHHHHHHhhCCCCC----------------------------
Confidence 1 111467899999999999999999876432110
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceeeecccccccccCCCCCCCCCCCCCCcccccccccc---------------------
Q 006791 451 IKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETK--------------------- 509 (631)
Q Consensus 451 ~~~~~~~~~~~a~~~l~~~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~--------------------- 509 (631)
....+.++.+++++++||++|||+|++|+|++++|.+.+|+|++.+..|.++|+.....
T Consensus 676 ~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~nSY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~ 755 (898)
T TIGR02103 676 PSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDRDSYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPV 755 (898)
T ss_pred CHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCCCCCcCchhhheecccccccccccCCCcccccccchhhhccc
Confidence 01235667788999999999999999999999999999999999999999999876421
Q ss_pred ------------cchHHHHHHHHHHHHhcCCCCCCcCCCCC-CceeeeccccCCCCCcEEEEEEecCC----------CC
Q 006791 510 ------------KNSHYRFFSEVIKFRQSRRVFGREDFLNI-NDVTWHEDNWDNYDSKFLAFTLHDNN----------GA 566 (631)
Q Consensus 510 ------------~~~~~~~~~~Li~lR~~~~~l~~g~~~~~-~~~~~~~~~~~~~~~~vla~~r~~~~----------~~ 566 (631)
...+.++||+||+||+++|+|+.++...+ +.+.|+... ....+++++|...+.. -+
T Consensus 756 ~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~~~v~F~~~g-~~~~~g~i~~~i~d~~~~~~~~~d~~~~ 834 (898)
T TIGR02103 756 LQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVMKRVDFRNTG-PDQIPGLIVMSIDDGGIQAGASLDPRYD 834 (898)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHHhheEEeccC-CcCCCCEEEEEEcCCccccccccccccC
Confidence 14689999999999999999999988654 346776321 1234799999997641 14
Q ss_pred eEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCcEEEEEEe
Q 006791 567 DIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEA 630 (631)
Q Consensus 567 ~~lvv~N~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~vl~~ 630 (631)
.++||+|.+.+++++ +|.. .+..|.....-.......+..........+++|||+|++||..
T Consensus 835 ~ivVv~Na~~~~~~~-~~~~-~~~~~~l~~~~~~~~d~~v~~~~~~~~~~~~~vp~~s~~V~~~ 896 (898)
T TIGR02103 835 GIVVIFNARPEEVTL-SPDF-AGTGLELHAVQQASGDESVAKSVYSAANGTFTVPAWTTAVFVL 896 (898)
T ss_pred eEEEEEcCCCccEEE-eccc-CCCcEEEEecccccCccccccceeeccCCEEEEcCcEEEEEEe
Confidence 699999999999998 7754 2446775432211111111111111234689999999999974
No 9
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.1e-72 Score=616.42 Aligned_cols=518 Identities=22% Similarity=0.384 Sum_probs=371.1
Q ss_pred CCCcCCCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCccchhccccccccccCCC
Q 006791 8 PRVNKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLP 87 (631)
Q Consensus 8 ~~~~~~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (631)
|+..+.++||+++||++. +|..|+|+|.+.. |.. ..++||||++++.++.. .+. +.+..+
T Consensus 167 pM~~~~~GVWelfipg~~-~G~~YKYeI~~~~----G~~----~~k~DPYA~~~e~~p~~------asv-----V~~~~~ 226 (730)
T PRK12568 167 PMRQRIGGFWELFLPRVE-AGARYKYAITAAD----GRV----LLKADPVARQTELPPAT------ASV-----VPSAAA 226 (730)
T ss_pred ecccCCCCEEEEEECCCC-CCCEEEEEEEcCC----CeE----eecCCCcceEeecCCCC------CeE-----EcCCCC
Confidence 444457779999999975 8999999998743 222 35799999998765532 122 223346
Q ss_pred CCCCCCCC----CCCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhh-chHHHHcCCceEEECCCcccchhhhh
Q 006791 88 FDWGDNYK----LPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK-IPHLLELGINAVELLPVFEFDEMEFQ 162 (631)
Q Consensus 88 ~~w~~~~~----~p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~-LdyLk~LGvt~I~L~Pi~~~~~~~~~ 162 (631)
|+|.++.+ .|....++++|||||+++|+.++..+ .++|++++++ |||||+||||+||||||+++
T Consensus 227 ~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~~-----~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~------ 295 (730)
T PRK12568 227 FAWTDAAWMARRDPAAVPAPLSIYEVHAASWRRDGHNQ-----PLDWPTLAEQLIPYVQQLGFTHIELLPITEH------ 295 (730)
T ss_pred CCCCChhhhhcccccCCCCCcEEEEEEhHHhcCCCCCC-----CCCHHHHHHHHHHHHHHcCCCEEEECccccC------
Confidence 88876532 23345789999999999999764332 3799999998 59999999999999999998
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCC
Q 006791 163 RRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGI 242 (631)
Q Consensus 163 ~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~ 242 (631)
|. .++|||++.+||+|+++||+. +|||+||++||++||+||||+|+||++.. .+. +..|++.
T Consensus 296 ----~~---~~~wGY~~~~~~a~~~~~G~~--------~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d--~~~-l~~fdg~ 357 (730)
T PRK12568 296 ----PF---GGSWGYQPLGLYAPTARHGSP--------DGFAQFVDACHRAGIGVILDWVSAHFPDD--AHG-LAQFDGA 357 (730)
T ss_pred ----CC---CCCCCCCCCcCCccCcccCCH--------HHHHHHHHHHHHCCCEEEEEeccccCCcc--ccc-cccCCCc
Confidence 32 368999999999999999997 99999999999999999999999999973 222 3355543
Q ss_pred CCCcCeeeCCC-CCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEeccc-ccccCC---CCCC--------
Q 006791 243 DNKVYYMVDGT-GQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGT---DGSP-------- 309 (631)
Q Consensus 243 ~~~~yy~~~~~-~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~-~l~~~~---~~~~-------- 309 (631)
..|...++. +...+|.. -.+|+.+|+||++|+++++||+++|||||||+|++. +++.+. .|.|
T Consensus 358 --~~Ye~~d~~~g~~~~W~~--~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~ 433 (730)
T PRK12568 358 --ALYEHADPREGMHRDWNT--LIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGR 433 (730)
T ss_pred --cccccCCCcCCccCCCCC--eecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCc
Confidence 233333332 22333321 258999999999999999999999999999999654 454442 1222
Q ss_pred --CCChHHHHHHHh--ccccCCCeEeeccCCCCC-c---cccCCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHh
Q 006791 310 --LNAPPLIRAIAK--DAILSRCKIIAEPWDCRG-L---YLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRI 381 (631)
Q Consensus 310 --~~~~~~l~~i~~--~~~~~~~~li~E~w~~~~-~---~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l 381 (631)
.++..++++++. ....|++++|||.+..-. . ...|+ ..+.+.||..|++.+++|+..++..+......+
T Consensus 434 en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gG---lGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~l 510 (730)
T PRK12568 434 ENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGG---LGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQL 510 (730)
T ss_pred cChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCC---CCcCcEeCChhHHHHHHHHhhCchhhhhhhhhh
Confidence 234578888877 457799999999754321 1 11111 123499999999999999999887766655666
Q ss_pred hCCccccccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHH
Q 006791 382 SGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKN 461 (631)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 461 (631)
+.+.. |.. .....+..|||+.-. +|..+...+ +|. ...+.+++|+
T Consensus 511 tf~~~-y~~-----~e~fvlp~SHDEvvh-------gk~sl~~km----------------pGd------~~~k~a~lR~ 555 (730)
T PRK12568 511 TFGLV-YAF-----SERFVLPLSHDEVVH-------GTGGLLGQM----------------PGD------DWRRFANLRA 555 (730)
T ss_pred hhhhh-hhh-----hccEeccCCCccccc-------CchhhhhcC----------------CCC------HHHHHHHHHH
Confidence 54432 210 122345689998521 222222222 121 1224567889
Q ss_pred HHHHHHhcCCceeeecccccccccCCCCCCCCCCCCCCcccccccc-cccchHHHHHHHHHHHHhcCCCCCCcCCCCCCc
Q 006791 462 FHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE-TKKNSHYRFFSEVIKFRQSRRVFGREDFLNIND 540 (631)
Q Consensus 462 a~~~l~~~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~-~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~ 540 (631)
++++||+.||.||||||+|||+.+..+. + .+++|...+ ..+..+.+++|+|++||+++|+|...+.... .
T Consensus 556 ~~~~~~~~PGkkLlFmG~Efgq~~ew~~-----~---~~ldW~ll~~~~h~~~~~~~~dLn~ly~~~paL~~~d~~~~-g 626 (730)
T PRK12568 556 YLALMWAHPGDKLLFMGAEFGQWADWNH-----D---QSLDWHLLDGARHRGMQQLVGDLNAALRRTPALYRGTHRAD-G 626 (730)
T ss_pred HHHHHHhCCCcceeeCchhhCCcccccC-----C---CCccccccCChhHHHHHHHHHHHHHHHHhChhhhcccCCCC-C
Confidence 9999999999999999999999875442 2 468999866 2456899999999999999999998877543 6
Q ss_pred eeeeccccCCCCCcEEEEEEecCC--CCeEEEEEeCCCCc---EEEEcCCCCCCCCeEEEEeCCCCCC--CCC------C
Q 006791 541 VTWHEDNWDNYDSKFLAFTLHDNN--GADIYLAFNAHDFF---VKVSLPPPPPKRQWFRVVDTNLESP--DDI------V 607 (631)
Q Consensus 541 ~~~~~~~~~~~~~~vla~~r~~~~--~~~~lvv~N~~~~~---~~~~lp~~~~~~~~~~~~~~~~~~~--~~~------~ 607 (631)
+.|+... +.+++|++|.|+..+ ++.++||+|++..+ ..+.+|. .+.|++++||+...- +.. .
T Consensus 627 f~wi~~~--d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~~~~Y~ig~p~---~G~~~eilNsd~~~ygG~~~~n~~~~~ 701 (730)
T PRK12568 627 FDWSVAD--DARNSVLAFIRHDPDGGGVPLLAVSNLTPQPHHDYRVGVPR---AGGWREILNTDSAHYGGSNLGNSGRLA 701 (730)
T ss_pred eEEEeCC--CCCCcEEEEEEecCCCCCCeEEEEECCCCCCccCeEECCCC---CCeEEEEEcCchhhhCCCCcCCCCcee
Confidence 7887542 567889999999753 35699999999774 4455554 589999999985431 111 0
Q ss_pred CCCCC----CCCCeEEEcCcEEEEEEe
Q 006791 608 PEGAA----GTGSTYNLSPYSSILLEA 630 (631)
Q Consensus 608 ~~~~~----~~~~~~~l~p~s~~vl~~ 630 (631)
..... ..+..|+|||++++||+.
T Consensus 702 ~~~~~~~g~~~s~~i~lppl~~~~~~~ 728 (730)
T PRK12568 702 TEPTGMHGHAQSLRLTLPPLATIYLQA 728 (730)
T ss_pred ecccccCCCccEEEEEeCCCEEEEEEE
Confidence 00111 123368999999999974
No 10
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-73 Score=599.30 Aligned_cols=595 Identities=34% Similarity=0.539 Sum_probs=468.0
Q ss_pred CeEeeCCCCCcCCCCE--EEEEEcCCCCCCcEEEEEEEcCC----CCCCCcccCCCceeeccccceeccCcccC---Ccc
Q 006791 1 MIELPLDPRVNKTGDI--WHICIEDLPRSEVLYGYRVDGPR----DWHQGHRFDSSIVLIDPYAKLVEGRRHFG---DAS 71 (631)
Q Consensus 1 ~~~~~~~~~~~~~g~v--w~~~i~~~~~~g~~Y~y~i~~~~----~~~~~~~~~~~~~~~DPya~~~~~~~~~~---~~~ 71 (631)
|...++++.....|+. |..+...++.+...|.|+|+++. .+..++.........+||+..+...+.++ ...
T Consensus 118 ~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~ 197 (757)
T KOG0470|consen 118 TEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETCKRIPAWATYVDQE 197 (757)
T ss_pred eeecccccccccccccCCCCCcccccCcccccceeEEecCcccCCCccccccceeEEEeecCCcceeeccChHhhcccCC
Confidence 4567888888888888 99888766556788999998874 23334443334567788887765555442 122
Q ss_pred chhccccccccccCCCCCCCCCCCCCCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhh-chHHHHcCCceEEE
Q 006791 72 AKLSKFLGTYEFESLPFDWGDNYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK-IPHLLELGINAVEL 150 (631)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~w~~~~~~p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~-LdyLk~LGvt~I~L 150 (631)
.......+....+.++++|..+..+|..+.++++|||+|||.|+.++++..+ .+| |+++++| |++||+||+|||+|
T Consensus 198 ~~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~--~~g-Y~~FteKvlphlK~LG~NaiqL 274 (757)
T KOG0470|consen 198 GEGPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNT--RGG-YLGFTEKVLPHLKKLGYNAIQL 274 (757)
T ss_pred CcccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCCcccc--ccc-hhhhhhhhhhHHHHhCccceEE
Confidence 2222233333334467999987777777777999999999999988877654 345 9999999 99999999999999
Q ss_pred CCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCC
Q 006791 151 LPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEAD 230 (631)
Q Consensus 151 ~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~ 230 (631)
|||+|++ +++.+|||.|++||+|..+|||.+. | +||.|||.||++||..||.|+||||+||++.+
T Consensus 275 mpi~Ef~------------~~~~s~GY~~~nFFapssrYgt~~s-~-~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n- 339 (757)
T KOG0470|consen 275 MPIFEFG------------HYYASWGYQVTNFFAPSSRYGTPES-P-CRINEFKELVDKAHSLGIEVLLDVVHSHAAKN- 339 (757)
T ss_pred eehhhhh------------hhhhccCcceeEeecccccccCCCc-c-cchHHHHHHHHHHhhCCcEEehhhhhhhcccC-
Confidence 9999992 2367999999999999999999744 4 44889999999999999999999999999983
Q ss_pred CCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEeccccccc-------
Q 006791 231 DANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR------- 303 (631)
Q Consensus 231 ~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~------- 303 (631)
...+ +..|+|+++..||+..+ ...++.+|++.+|+++++|+++|+++++||++||+|||||||.++.|-+
T Consensus 340 ~~d~-l~~fdGid~~~Yf~~~~--r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~ 416 (757)
T KOG0470|consen 340 SKDG-LNMFDGIDNSVYFHSGP--RGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAA 416 (757)
T ss_pred cCCc-chhccCcCCceEEEeCC--cccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhcccccc
Confidence 2333 44699999999998877 5567788999999999999999999999999999999999998777765
Q ss_pred ----------CCCCCCCCChHHHH-HHHhccccCCCe-EeeccCCCCCccccCCCCCccchhhhhhhhHHHHHHHHcCCC
Q 006791 304 ----------GTDGSPLNAPPLIR-AIAKDAILSRCK-IIAEPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDP 371 (631)
Q Consensus 304 ----------~~~~~~~~~~~~l~-~i~~~~~~~~~~-li~E~w~~~~~~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~ 371 (631)
...+...+..+++. .++.+.++.... +|++.|+.++++..+.+|.+++++.||..|+..++.+.++..
T Consensus 417 ~f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~ 496 (757)
T KOG0470|consen 417 GFDGDYIEYFGTDGSFVDVDALVYLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQ 496 (757)
T ss_pred ccCCcchhhhccCCCcccccHHHHHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHH
Confidence 22334466778888 677787777777 999999999999999999999999999999999999988876
Q ss_pred CcHH-HHHHHhhCCccccccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHH
Q 006791 372 GMKG-ILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDAS 450 (631)
Q Consensus 372 ~~~~-~~~~~l~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~ 450 (631)
.... .+++.+.++...+..+.+.|...++|+++||+.++.|+.+++.+ ++.++.+|+|+.+|.+..+.
T Consensus 497 ~Lk~~~~~~~~~gs~~~~ltN~R~~e~~v~y~~~HDq~~v~d~~T~af~-----------~l~d~~~~~~~~~g~p~~~~ 565 (757)
T KOG0470|consen 497 LLKGSSDAEWIMGSIDYTLTNRRYPEKSVNYAESHDQALVGDLVTIAFK-----------WLMDETSWNCGSEGTPGTSV 565 (757)
T ss_pred HhccCchhheeccCcceeeeccccccceeeeeeccCCccccceeeecch-----------hhcchhhhcccccCCCcchH
Confidence 5544 67888999988888888889999999999999999998777554 35667899999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceeeecccccccccCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCC
Q 006791 451 IKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVF 530 (631)
Q Consensus 451 ~~~~~~~~~~~a~~~l~~~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~~~~~~~~Li~lR~~~~~l 530 (631)
+.+.+..+++.-+..+++.+|+||+|||+|+|.++-++++.|+.+...+-.+|.........++++.+.|+.+|+++-.|
T Consensus 566 idR~r~~h~~~~lit~~lg~g~pl~fmGdEfGh~e~~d~~~~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L 645 (757)
T KOG0470|consen 566 IDRGRALHKMIRLITLGLGGGAPLNFMGDEFGHPEWLDFPRYGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLL 645 (757)
T ss_pred HHHHHHHHHHHHHHHHhccCccceeccccccCCccccCCCcccCCccccccCccccccccchhhhhhhhhhhhhhHHHHH
Confidence 88887777777777788889999999999999999999999999888888888665555668999999999999998777
Q ss_pred CCcCCCCCCceeeec-----cccC--CCCCcEEEEEEecCC-CCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCC
Q 006791 531 GREDFLNINDVTWHE-----DNWD--NYDSKFLAFTLHDNN-GADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLES 602 (631)
Q Consensus 531 ~~g~~~~~~~~~~~~-----~~~~--~~~~~vla~~r~~~~-~~~~lvv~N~~~~~~~~~lp~~~~~~~~~~~~~~~~~~ 602 (631)
..........+.|+. +.|. ...+.+++|.-++.. ...+.|.+|.......+-+|..+.++.|.+|.++....
T Consensus 646 ~~~~~~~~~~~~~~~~k~e~~~~i~fer~~~~~vfn~h~~~s~~d~~vg~n~~~~~~iVl~sd~p~~~~~~rl~dt~~~~ 725 (757)
T KOG0470|consen 646 EERNGFTTSELQYISLKHEADEVIVFERGPLLFVFNFHDSNSYIDYRVGFNAPGKYTIVLNSDRPKGGGWNRLDDTALFF 725 (757)
T ss_pred HHhccccccccccccccchhhheeeeccCCeEEEEEecCCCCCceeEEEecCCCceEEEECCCCCCCCCccccccccccC
Confidence 665554444455542 1111 123455666665543 36899999999888888888888889999999998877
Q ss_pred CCCCCCCCCCCCCCeEEEcCcEEEEE
Q 006791 603 PDDIVPEGAAGTGSTYNLSPYSSILL 628 (631)
Q Consensus 603 ~~~~~~~~~~~~~~~~~l~p~s~~vl 628 (631)
+.++...+.......+.+.+++ +||
T Consensus 726 p~d~~~~g~~~~l~VY~~~~~a-~vl 750 (757)
T KOG0470|consen 726 PYDFRSEGRPVSLQVYIPSRTA-TVL 750 (757)
T ss_pred ccccccCCeeeeEEEEeccCcc-eEe
Confidence 6665555544433334444555 444
No 11
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=4.3e-73 Score=617.94 Aligned_cols=450 Identities=25% Similarity=0.428 Sum_probs=324.4
Q ss_pred CCcCCCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCccchhccccccccccCCCC
Q 006791 9 RVNKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPF 88 (631)
Q Consensus 9 ~~~~~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (631)
+....+++|+++++++ .+|+.|+|+|++. ..++||||+++...... . +.+.+...|
T Consensus 24 m~k~~~GvW~~~v~~~-~~G~~Y~y~v~g~------------~~v~DPya~~~~~~~~~------~-----S~V~d~~~~ 79 (542)
T TIGR02402 24 MQRLGDGWFEITVPPV-GPGDRYGYVLDDG------------TPVPDPASRRQPDGVHG------P-----SQVVDPDRY 79 (542)
T ss_pred CeECCCCEEEEEECCC-CCCCEEEEEEeee------------EEecCccccccccCCCC------C-----eEEecCccc
Confidence 3444566999999985 4899999999751 36899999987422110 1 222334569
Q ss_pred CCCCCCCCCCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCC
Q 006791 89 DWGDNYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPR 168 (631)
Q Consensus 89 ~w~~~~~~p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~ 168 (631)
+|.++.+ +..+++++|||||||++|+. .|||+||+++|||||+||||+||||||+++ +.
T Consensus 80 ~w~~~~~-~~~~~~~~viYE~hv~~f~~----------~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~----------~~ 138 (542)
T TIGR02402 80 AWQDTGW-RGRPLEEAVIYELHVGTFTP----------EGTFDAAIEKLPYLADLGITAIELMPVAQF----------PG 138 (542)
T ss_pred CCCCccc-cCCCccccEEEEEEhhhcCC----------CCCHHHHHHhhHHHHHcCCCEEEeCccccC----------CC
Confidence 9987644 44568999999999999986 299999999999999999999999999998 21
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCe
Q 006791 169 DHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 248 (631)
Q Consensus 169 ~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy 248 (631)
..+|||++.+||+|+++||+. +|||+||++||++||+||||+|+||++. ++.++..+. + ||
T Consensus 139 ---~~~~GY~~~~~~~~~~~~G~~--------~e~k~lV~~aH~~Gi~VilD~V~NH~~~---~~~~~~~~~----~-y~ 199 (542)
T TIGR02402 139 ---TRGWGYDGVLPYAPHNAYGGP--------DDLKALVDAAHGLGLGVILDVVYNHFGP---EGNYLPRYA----P-YF 199 (542)
T ss_pred ---CCCCCCCccCccccccccCCH--------HHHHHHHHHHHHCCCEEEEEEccCCCCC---ccccccccC----c-cc
Confidence 368999999999999999997 9999999999999999999999999987 334443331 2 55
Q ss_pred eeCCCCCccccCCCCCCCCCCCH---HHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHh--cc
Q 006791 249 MVDGTGQLLNYAGCGNTLNCNHP---VVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK--DA 323 (631)
Q Consensus 249 ~~~~~~~~~~~~~~~~~ln~~~~---~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~--~~ 323 (631)
... ..++||+++|+++| +||++|+++++||+++|||||||||++..|.... ...+++++++ +.
T Consensus 200 ~~~------~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~------~~~~l~~~~~~~~~ 267 (542)
T TIGR02402 200 TDR------YSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTS------AKHILEELAREVHE 267 (542)
T ss_pred cCC------CCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhcccc------HHHHHHHHHHHHHH
Confidence 422 13567899999999 9999999999999999999999999999886431 2345665554 23
Q ss_pred ccCC---CeEeeccCCCCCcccc-CCCCCccchhhhhhhhHHHHHHHHcCCC-C-------cHHHHHHHhhCC------c
Q 006791 324 ILSR---CKIIAEPWDCRGLYLV-GKFPNWDRWAEWNGKYRDDLRKFIKGDP-G-------MKGILATRISGS------S 385 (631)
Q Consensus 324 ~~~~---~~li~E~w~~~~~~~~-~~~~~~~~~~~~n~~f~~~i~~~~~~~~-~-------~~~~~~~~l~~~------~ 385 (631)
..|+ ++||||.|........ .......+++.||+.|++.++.++.|.. + ....+...+... .
T Consensus 268 ~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~ 347 (542)
T TIGR02402 268 LAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEY 347 (542)
T ss_pred HCCCCceEEEEEecCCCCCcccccccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccc
Confidence 4566 9999998854322211 0001122458999999999999988753 1 122344433321 0
Q ss_pred cccc-------cCCCCCCcceeeeeccCCC---chhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHH
Q 006791 386 DLYR-------VNKRKPYHSINFIIAHDGF---TLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALR 455 (631)
Q Consensus 386 ~~~~-------~~~~~~~~~~nf~~~HD~~---~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~ 455 (631)
..+. .....+.+.+||++|||+. ++.+.+. ....
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~gn~~~~~Rl~------------------------------------~~~~ 391 (542)
T TIGR02402 348 SPFRGRPHGRPSGDLPPHRFVVFIQNHDQIGNRALGERLS------------------------------------QLLS 391 (542)
T ss_pred cccccccCCCCCCCCCHHHEEEEccCcccccccchhhhhh------------------------------------hcCC
Confidence 0110 0011346889999999963 2222221 0112
Q ss_pred HHHHHHHHHHHHhcCCceeeecccccccccCCCC--------------------------------CCCCCC-CCCCccc
Q 006791 456 SRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN--------------------------------NSYGHD-TAINNFQ 502 (631)
Q Consensus 456 ~~~~~~a~~~l~~~pGiP~iy~G~E~g~~~~g~~--------------------------------n~y~~~-~~~~~~~ 502 (631)
.+++++|++++||+||+||||||||+|++++... ++.+.. .++++++
T Consensus 392 ~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~ 471 (542)
T TIGR02402 392 PGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLD 471 (542)
T ss_pred HHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCC
Confidence 3578899999999999999999999999985310 000000 1468899
Q ss_pred ccccc-cccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEE
Q 006791 503 WGQLE-TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVK 580 (631)
Q Consensus 503 W~~~~-~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~~~~~lvv~N~~~~~~~ 580 (631)
|+..+ .+..++++|||+||+|||++|+|+.++...+. ... ..++.+++|.. + ++.++|++|+++.+++
T Consensus 472 W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~---~~~----~~~~~~~~~~~--~-~~~~~v~~N~~~~~~~ 540 (542)
T TIGR02402 472 WAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALE---VVV----DEDPGWVAVRF--G-RGELVLAANLSTSPVA 540 (542)
T ss_pred cccccccchHHHHHHHHHHHHHhccCccccCCCcccce---eee----cCCCCEEEEEE--C-CCeEEEEEeCCCCCcC
Confidence 98865 24568999999999999999999988765431 110 23567888883 3 5689999999987655
No 12
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=5.3e-72 Score=614.67 Aligned_cols=516 Identities=21% Similarity=0.341 Sum_probs=355.8
Q ss_pred CCCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCccchhccccccccccCCCCCCC
Q 006791 12 KTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWG 91 (631)
Q Consensus 12 ~~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 91 (631)
..+++|+++||++ .+|..|+|+|++.. |.. ..++||||+.+..++.. .+ ++ ...+|+|.
T Consensus 71 ~~~GvW~~~vpg~-~~g~~Yky~I~~~~----g~~----~~~~DPYa~~~~~~~~~------~s-----vv-~~~~~~w~ 129 (639)
T PRK14706 71 LDFGFWGAFVPGA-RPGQRYKFRVTGAA----GQT----VDKMDPYGSFFEVRPNT------AS-----II-WEDRFEWT 129 (639)
T ss_pred cCCCEEEEEECCC-CCCCEEEEEEECCC----CCE----EeccCcceEEEecCCCC------ce-----EE-CCCCCCCC
Confidence 3556999999986 48999999998753 222 24699999998765432 11 11 22359998
Q ss_pred CCCCCC-C-C-CCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhc-hHHHHcCCceEEECCCcccchhhhhhcCCC
Q 006791 92 DNYKLP-N-I-PEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRNP 167 (631)
Q Consensus 92 ~~~~~p-~-~-~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~L-dyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~ 167 (631)
++.++. + . ..++++||||||++|+...... .|+|++++++| +|||+||||||+||||+++ |
T Consensus 130 d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~-----~~ty~~~~~~l~~ylk~lG~t~velmPv~e~----------~ 194 (639)
T PRK14706 130 DTRWMSSRTAGFDQPISIYEVHVGSWARRDDGW-----FLNYRELAHRLGEYVTYMGYTHVELLGVMEH----------P 194 (639)
T ss_pred CcccccccCCccCCCcEEEEEehhhcccCCCCC-----ccCHHHHHHHHHHHHHHcCCCEEEccchhcC----------C
Confidence 754321 1 1 2356999999999998753221 38999999997 9999999999999999998 3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcC
Q 006791 168 RDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 247 (631)
Q Consensus 168 ~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~y 247 (631)
. .++|||++.+||+|+++||+. +|||+||++||++||+||||+|+||++.. +.++..+++. +.|
T Consensus 195 ~---~~~wGY~~~~~~~~~~~~g~~--------~~~~~lv~~~H~~gi~VilD~v~nH~~~~---~~~l~~~dg~--~~y 258 (639)
T PRK14706 195 F---DGSWGYQVTGYYAPTSRLGTP--------EDFKYLVNHLHGLGIGVILDWVPGHFPTD---ESGLAHFDGG--PLY 258 (639)
T ss_pred C---CCCCCcCcccccccccccCCH--------HHHHHHHHHHHHCCCEEEEEecccccCcc---hhhhhccCCC--cce
Confidence 2 468999999999999999997 99999999999999999999999999873 3344455543 334
Q ss_pred eeeCCC-CCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccc-cccCCCC-----------CCCCChH
Q 006791 248 YMVDGT-GQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASV-LCRGTDG-----------SPLNAPP 314 (631)
Q Consensus 248 y~~~~~-~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~-l~~~~~~-----------~~~~~~~ 314 (631)
+..++. +...+|.. ..+|+.+|+||++|+++++||++||||||||||++.. ++.+++. ...++..
T Consensus 259 ~~~~~~~g~~~~w~~--~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~ 336 (639)
T PRK14706 259 EYADPRKGYHYDWNT--YIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIA 336 (639)
T ss_pred eccCCcCCcCCCCCC--cccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHH
Confidence 333332 22223322 2489999999999999999999999999999997655 4444321 1234567
Q ss_pred HHHHHHh--ccccCCCeEeeccCCCCCccccCCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCccccccCC
Q 006791 315 LIRAIAK--DAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNK 392 (631)
Q Consensus 315 ~l~~i~~--~~~~~~~~li~E~w~~~~~~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 392 (631)
+|++++. ....|++++|||.|..-............+.+.||..|++.++.++..+..........+..+ ..+.
T Consensus 337 fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt~~-~~y~--- 412 (639)
T PRK14706 337 FLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPYGLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLTFF-NVYR--- 412 (639)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCCCCccccEeccHHHHHHHHHhccCchhhhhchhccchh-hhhh---
Confidence 8888886 355689999999886421111000001223499999999999998876654433222222211 1111
Q ss_pred CCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCc
Q 006791 393 RKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGT 472 (631)
Q Consensus 393 ~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~pGi 472 (631)
. .....|++|||+.+..... ....+ .|. ...+.+++|+++++|||+||+
T Consensus 413 -~-~e~~il~~SHDev~~~k~s-------l~~k~----------------~g~------~~~~~a~~r~~~~~~~t~PG~ 461 (639)
T PRK14706 413 -T-SENYVLAISHDEVVHLKKS-------MVMKM----------------PGD------WYTQRAQYRAFLAMMWTTPGK 461 (639)
T ss_pred -c-cccEecCCCCccccCCccc-------hHhHc----------------CCC------HHHHHHHHHHHHHHHHhCCCC
Confidence 0 0112367999997642110 00000 010 112346788999999999999
Q ss_pred eeeecccccccccCCCCCCCCCCCCCCccccccccc-ccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeeccccCCC
Q 006791 473 PMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNY 551 (631)
Q Consensus 473 P~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~-~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~~~~~ 551 (631)
||||||+|+|+.+. .+.+.+|+|...+. ....+++|+|+|++||+++|+|+.+++... .+.|+.. .+.
T Consensus 462 pLiFmG~EfG~~~e--------w~~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~gd~~~~-~f~wi~~--~d~ 530 (639)
T PRK14706 462 KLLFMGQEFAQGTE--------WNHDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRGDKREE-GLYWVSA--DDT 530 (639)
T ss_pred cEEEeccccCCCCC--------CCcccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhCCCCCC-CeEEEEe--ecC
Confidence 99999999997542 22456889987652 334799999999999999999999886532 4556532 245
Q ss_pred CCcEEEEEEecCC-CCeEEEEEeCCCC---cEEEEcCCCCCCCCeEEEEeCCCCCCCCC-------CCCCCC--C--CCC
Q 006791 552 DSKFLAFTLHDNN-GADIYLAFNAHDF---FVKVSLPPPPPKRQWFRVVDTNLESPDDI-------VPEGAA--G--TGS 616 (631)
Q Consensus 552 ~~~vla~~r~~~~-~~~~lvv~N~~~~---~~~~~lp~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~--~~~ 616 (631)
+++|+||.|..++ ++.++||+|++.. ...+.+|. .+.|++++||+...-... ...... + ...
T Consensus 531 ~~~VlaF~R~~~~~~~~vlvV~Nfs~~~~~~y~ig~p~---~g~~~~i~nsd~~~~gG~g~~n~~~~~~~~~~~g~~~si 607 (639)
T PRK14706 531 DNSVYAYVRRDSESGAWSLAVANLTPVYREQYRIGVPQ---GGEYRVLLSTDDGEYGGFGTQQPDLMASQEGWHGQPHSL 607 (639)
T ss_pred CCCEEEEEEecCCCCeeEEEEEeCCCCCcCCeEECCCC---CCeEEEEEcCCccccCCCCCCCCceeccccccCCCccEE
Confidence 6789999999763 2459999999974 45666664 689999999985431110 000000 1 133
Q ss_pred eEEEcCcEEEEEEe
Q 006791 617 TYNLSPYSSILLEA 630 (631)
Q Consensus 617 ~~~l~p~s~~vl~~ 630 (631)
.|+|||++++||+.
T Consensus 608 ~i~lp~~~~~~~~~ 621 (639)
T PRK14706 608 SLNLPPSSVLILEF 621 (639)
T ss_pred EEEeCCcEEEEEEE
Confidence 68999999999975
No 13
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.1e-70 Score=613.69 Aligned_cols=515 Identities=23% Similarity=0.374 Sum_probs=349.1
Q ss_pred CCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCccchhccccccccccCCCCCCCC
Q 006791 13 TGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGD 92 (631)
Q Consensus 13 ~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 92 (631)
.+|+|++++|++ .+|..|+|+|.... |.. ..+.||||+.+...... ++++.+...|.|.+
T Consensus 72 ~~Gvw~~~i~~~-~~g~~Y~y~v~~~~----g~~----~~~~DPya~~~~~~~~~-----------~s~v~d~~~~~w~~ 131 (633)
T PRK12313 72 ESGVWEGFIPGA-KEGQLYKYHISRQD----GYQ----VEKIDPFAFYFEARPGT-----------ASIVWDLPEYKWKD 131 (633)
T ss_pred CCCEEEEEeCCC-CCCCEEEEEEECCC----CeE----EecCCCceEEEecCCCC-----------ceEECCCcccCCCC
Confidence 556999999985 48999999997532 221 25699999998764421 12233445689987
Q ss_pred CCCC-----CCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhc-hHHHHcCCceEEECCCcccchhhhhhcCC
Q 006791 93 NYKL-----PNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRN 166 (631)
Q Consensus 93 ~~~~-----p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~L-dyLk~LGvt~I~L~Pi~~~~~~~~~~~~~ 166 (631)
+.+. +....++++||||||++|+.++..+ .|||++++++| ||||+||||+||||||+++
T Consensus 132 ~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~-----~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~---------- 196 (633)
T PRK12313 132 GLWLARRKRWNALDRPISIYEVHLGSWKRNEDGR-----PLSYRELADELIPYVKEMGYTHVEFMPLMEH---------- 196 (633)
T ss_pred hhhhhccccCCCCCCCceEEEEehhccccCCCCC-----ccCHHHHHHHHHHHHHHcCCCEEEeCchhcC----------
Confidence 6431 1123478999999999999875433 39999999995 9999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCc
Q 006791 167 PRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKV 246 (631)
Q Consensus 167 ~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~ 246 (631)
|. ..+|||++.+||+|+++|||. +|||+||++||++||+||||+|+||++.. +..+..|++. +.
T Consensus 197 ~~---~~~~GY~~~~y~~i~~~~Gt~--------~d~k~lv~~~H~~Gi~VilD~V~nH~~~~---~~~~~~~~~~--~~ 260 (633)
T PRK12313 197 PL---DGSWGYQLTGYFAPTSRYGTP--------EDFMYLVDALHQNGIGVILDWVPGHFPKD---DDGLAYFDGT--PL 260 (633)
T ss_pred CC---CCCCCCCCcCcCcCCCCCCCH--------HHHHHHHHHHHHCCCEEEEEECCCCCCCC---cccccccCCC--cc
Confidence 32 368999999999999999998 99999999999999999999999999873 2333345442 23
Q ss_pred CeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEeccc-ccccCCC--CC----------CCCCh
Q 006791 247 YYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGTD--GS----------PLNAP 313 (631)
Q Consensus 247 yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~-~l~~~~~--~~----------~~~~~ 313 (631)
|+..++.......++ ..+||+++|+||++|+++++||+++|||||||||++. ++..+.. +. ..+..
T Consensus 261 ~~~~~~~~~~~~~w~-~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 339 (633)
T PRK12313 261 YEYQDPRRAENPDWG-ALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAI 339 (633)
T ss_pred eeecCCCCCcCCCCC-CcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHH
Confidence 333333222221122 3689999999999999999999999999999999775 4433210 10 11235
Q ss_pred HHHHHHHh--ccccCCCeEeeccCCCCCccccCCCC-CccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCcccccc
Q 006791 314 PLIRAIAK--DAILSRCKIIAEPWDCRGLYLVGKFP-NWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRV 390 (631)
Q Consensus 314 ~~l~~i~~--~~~~~~~~li~E~w~~~~~~~~~~~~-~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 390 (631)
.+++++++ ....|++++|||.+..........+. ...+.+.||..|.+.++.++.............+..+. .+.
T Consensus 340 ~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 417 (633)
T PRK12313 340 YFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLTFSF-MYA- 417 (633)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCccccccccccchHHH-hhh-
Confidence 68888776 35678999999987533111110000 11234889999999999888655332211101111000 000
Q ss_pred CCCCCCcceeeeeccCCC-----chhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 006791 391 NKRKPYHSINFIIAHDGF-----TLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLA 465 (631)
Q Consensus 391 ~~~~~~~~~nf~~~HD~~-----~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 465 (631)
.. ...+++.|||+. |+...+ .|. .....+++|+++++
T Consensus 418 -~~---e~~~l~~sHD~~~~g~~~~~~~~----------------------------~g~------~~~~~~~~r~~~~~ 459 (633)
T PRK12313 418 -FS---ENFVLPFSHDEVVHGKKSLMHKM----------------------------PGD------RWQQFANLRLLYTY 459 (633)
T ss_pred -hh---cccccCCCCcccccCCccHHHhc----------------------------CCC------HHHHHHHHHHHHHH
Confidence 00 122466899985 221111 010 01124568899999
Q ss_pred HHhcCCceeeecccccccccCCCCCCCCCCCCCCccccccccc-ccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeee
Q 006791 466 LMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWH 544 (631)
Q Consensus 466 l~~~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~-~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~ 544 (631)
+||+||+||||||+|+|+.+... ..++|+|+..+. ...++++|||+||+||+++|+|+.+++.. ..+.|.
T Consensus 460 ~~t~pG~Plif~G~E~g~~~~~~--------~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~paL~~~d~~~-~~~~~l 530 (633)
T PRK12313 460 MITHPGKKLLFMGSEFGQFLEWK--------HDESLEWHLLEDPMNAGMQRFTSDLNQLYKDEPALWELDFSP-DGFEWI 530 (633)
T ss_pred HHhCCCCcEeecccccccCccCC--------ccCCCCccccCChhHHHHHHHHHHHHHHHHhChHhhcccCCC-CCcEEE
Confidence 99999999999999999976432 236899997542 34589999999999999999999876532 234554
Q ss_pred ccccCCCCCcEEEEEEec-CCCCeEEEEEeCCCCcEE-EEcCCCCCCCCeEEEEeCCCCCCCCC-C-------CCCC--C
Q 006791 545 EDNWDNYDSKFLAFTLHD-NNGADIYLAFNAHDFFVK-VSLPPPPPKRQWFRVVDTNLESPDDI-V-------PEGA--A 612 (631)
Q Consensus 545 ~~~~~~~~~~vla~~r~~-~~~~~~lvv~N~~~~~~~-~~lp~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~--~ 612 (631)
.. ....++++||.|.. .+++.++||+|++..+.+ +.|+.+. ++.|+.+++|+...-... . .... .
T Consensus 531 ~~--~~~~~~vlaf~R~~~~~~~~llvv~N~s~~~~~~y~i~~p~-~g~~~~ilnsd~~~ygG~~~~~~~~~~~~~~~~~ 607 (633)
T PRK12313 531 DA--DDADQSVLSFIRKGKNKGDFLVVVFNFTPVEREDYRIGVPV-AGIYEEILNTDSEEFGGSGKGNNGTVKAQEGPWH 607 (633)
T ss_pred EC--cCCCCCEEEEEEeCCCCCceEEEEEeCCCCcccceeECCCC-CCeEEEEEcCCchhcCCCCcCCCCceeecccccC
Confidence 32 13356799999987 226789999999975442 3333222 478999999876431110 0 0000 0
Q ss_pred C--CCCeEEEcCcEEEEEEeC
Q 006791 613 G--TGSTYNLSPYSSILLEAK 631 (631)
Q Consensus 613 ~--~~~~~~l~p~s~~vl~~~ 631 (631)
+ ....|.|||+|++||+.+
T Consensus 608 g~~~~~~i~ip~~s~~v~~~~ 628 (633)
T PRK12313 608 GRPQSLTLTLPPLGALVLKPK 628 (633)
T ss_pred CCCCEEEEEeCCCEEEEEEEc
Confidence 1 123689999999999853
No 14
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.3e-70 Score=616.25 Aligned_cols=514 Identities=22% Similarity=0.375 Sum_probs=349.7
Q ss_pred CCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCccchhccccccccccCCCCCCCC
Q 006791 13 TGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGD 92 (631)
Q Consensus 13 ~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 92 (631)
.+++|+++||++. +|..|+|+|+..+ |.. ..+.||||+++...+.. ++++.+...|+|.+
T Consensus 166 ~~Gvw~~~i~~~~-~g~~Y~y~v~~~~----g~~----~~~~DPYa~~~~~~~~~-----------~s~v~d~~~~~w~~ 225 (726)
T PRK05402 166 ESGVWELFIPGLG-EGELYKFEILTAD----GEL----LLKADPYAFAAEVRPAT-----------ASIVADLSQYQWND 225 (726)
T ss_pred CCCEEEEEeCCCC-CCCEEEEEEeCCC----CcE----eecCCCceEEEecCCCC-----------cEEEeCCccCCCCC
Confidence 4569999999864 8999999998643 222 24699999999876532 12233446799987
Q ss_pred CCCCC-----CCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhc-hHHHHcCCceEEECCCcccchhhhhhcCC
Q 006791 93 NYKLP-----NIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRN 166 (631)
Q Consensus 93 ~~~~p-----~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~L-dyLk~LGvt~I~L~Pi~~~~~~~~~~~~~ 166 (631)
+.++. ....++++||||||++|+.+... ...|+|++++++| ||||+||||+||||||+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~----~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~---------- 291 (726)
T PRK05402 226 AAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDG----GRFLSYRELADQLIPYVKEMGFTHVELLPIAEH---------- 291 (726)
T ss_pred cchhhcccccCcccCCcEEEEEehhhhccCCCC----CcccCHHHHHHHHHHHHHHcCCCEEEECCcccC----------
Confidence 64321 12457899999999999976221 2249999999996 9999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCc
Q 006791 167 PRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKV 246 (631)
Q Consensus 167 ~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~ 246 (631)
|. ..+|||++.+||+|+++|||. +|||+||++||++||+||||+|+||++. ++..+..|++. +.
T Consensus 292 ~~---~~~~GY~~~~y~ai~~~~Gt~--------~dfk~lV~~~H~~Gi~VilD~V~NH~~~---~~~~~~~~~~~--~~ 355 (726)
T PRK05402 292 PF---DGSWGYQPTGYYAPTSRFGTP--------DDFRYFVDACHQAGIGVILDWVPAHFPK---DAHGLARFDGT--AL 355 (726)
T ss_pred CC---CCCCCCCcccCCCcCcccCCH--------HHHHHHHHHHHHCCCEEEEEECCCCCCC---CccchhccCCC--cc
Confidence 32 368999999999999999997 9999999999999999999999999987 33334455543 23
Q ss_pred CeeeCC-CCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEeccc-ccccCCC---CCC----------CC
Q 006791 247 YYMVDG-TGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGTD---GSP----------LN 311 (631)
Q Consensus 247 yy~~~~-~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~-~l~~~~~---~~~----------~~ 311 (631)
|+..++ .+...+|.+ ..+|+++|+||++|+++++||+++|||||||||++. ++..+.. |.| ..
T Consensus 356 y~~~~~~~~~~~~w~~--~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (726)
T PRK05402 356 YEHADPREGEHPDWGT--LIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLE 433 (726)
T ss_pred eeccCCcCCccCCCCC--ccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHH
Confidence 333222 233333332 378999999999999999999999999999999765 4433221 111 12
Q ss_pred ChHHHHHHHh--ccccCCCeEeeccCCCCCc----cccCCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCc
Q 006791 312 APPLIRAIAK--DAILSRCKIIAEPWDCRGL----YLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSS 385 (631)
Q Consensus 312 ~~~~l~~i~~--~~~~~~~~li~E~w~~~~~----~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~ 385 (631)
...+++++++ ....|++++|||.+..... ...++ ..+.+.||..|++.+..++..+..........+..+
T Consensus 434 ~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~G---~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 509 (726)
T PRK05402 434 AIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGG---LGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFS- 509 (726)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCCCCcCccccccCCC---CCCCceecCCcchHHHHHHhhCcccccccccchhHH-
Confidence 3567888776 3567899999996542211 01111 123388999898888877764432211100001100
Q ss_pred cccccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 006791 386 DLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLA 465 (631)
Q Consensus 386 ~~~~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 465 (631)
..+. . ....+++.|||+.+..... ..+. ..|. .....+++|+++++
T Consensus 510 ~~~~--~---~e~~~l~~sHD~~~~g~~~-------l~~~----------------~~g~------~~~~~~~lrl~~~~ 555 (726)
T PRK05402 510 LLYA--Y---SENFVLPLSHDEVVHGKGS-------LLGK----------------MPGD------DWQKFANLRAYYGY 555 (726)
T ss_pred HhHh--h---hccccCCCCCceeeeCccc-------HHhh----------------CCCC------HHHHHHHHHHHHHH
Confidence 0000 0 0123467899985321100 0000 0010 01124568899999
Q ss_pred HHhcCCceeeecccccccccCCCCCCCCCCCCCCcccccccc-cccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeee
Q 006791 466 LMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE-TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWH 544 (631)
Q Consensus 466 l~~~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~-~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~ 544 (631)
+||+||+||||||||+|+.+... .+++|+|+..+ ....++++|||+|++||+++|+|+.+++... .+.|.
T Consensus 556 ~~t~pG~Plif~G~E~g~~~~~~--------~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~-~~~~~ 626 (726)
T PRK05402 556 MWAHPGKKLLFMGGEFGQGREWN--------HDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDPE-GFEWI 626 (726)
T ss_pred HHHCCCcCEeeCchhcCCCCCCC--------ccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCcC-CeeEE
Confidence 99999999999999999987432 35789998754 2345899999999999999999998877532 34554
Q ss_pred ccccCCCCCcEEEEEEecCC-CCeEEEEEeCCCCc---EEEEcCCCCCCCCeEEEEeCCCCCCCCC--CC-CCC-----C
Q 006791 545 EDNWDNYDSKFLAFTLHDNN-GADIYLAFNAHDFF---VKVSLPPPPPKRQWFRVVDTNLESPDDI--VP-EGA-----A 612 (631)
Q Consensus 545 ~~~~~~~~~~vla~~r~~~~-~~~~lvv~N~~~~~---~~~~lp~~~~~~~~~~~~~~~~~~~~~~--~~-~~~-----~ 612 (631)
.. ....++|+||.|..++ ++.++||+|++..+ ..+.+|. .+.|+.+++++...-... .. ... .
T Consensus 627 ~~--~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~---~g~~~~ilnsd~~~~gg~~~~~~~~~~~~~~~ 701 (726)
T PRK05402 627 DA--DDAENSVLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQ---AGRWREVLNTDAEHYGGSNVGNGGGVHAEEVP 701 (726)
T ss_pred ec--ccCCCCEEEEEEecCCCCCeEEEEEeCCCCcccceEECCCC---CCeEEEEEcCcchhhCCCCCCCCCceeccccc
Confidence 22 1345789999998653 47899999999764 3445553 579999999985431110 00 000 0
Q ss_pred --C--CCCeEEEcCcEEEEEEe
Q 006791 613 --G--TGSTYNLSPYSSILLEA 630 (631)
Q Consensus 613 --~--~~~~~~l~p~s~~vl~~ 630 (631)
+ ....|.|||+|++||+.
T Consensus 702 ~~g~~~~~~i~lp~~~~~v~~~ 723 (726)
T PRK05402 702 WHGRPHSLSLTLPPLATLILKP 723 (726)
T ss_pred cCCCCCEEEEEeCCCEEEEEEE
Confidence 0 12368999999999975
No 15
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=2.2e-70 Score=606.72 Aligned_cols=510 Identities=22% Similarity=0.345 Sum_probs=342.7
Q ss_pred CCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCccchhccccccccccCCCCCCCCC
Q 006791 14 GDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDN 93 (631)
Q Consensus 14 g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 93 (631)
+++|+++||++ .+|..|+|+|+... |. ..++.||||+++...+.. .+++.+...|.|.+.
T Consensus 64 ~Gvw~~~i~~~-~~g~~Y~y~v~~~~----g~----~~~~~DPYA~~~~~~~~~-----------~s~v~d~~~~~w~~~ 123 (613)
T TIGR01515 64 NGIWELFIPGI-GEGELYKYEIVTNN----GE----IRLKADPYAFYAEVRPNT-----------ASLVYDLEGYSWQDQ 123 (613)
T ss_pred CCEEEEEeCCC-CCCCEEEEEEECCC----Cc----EEEeCCCCEeeeccCCCC-----------cEEEECCccCccCch
Confidence 56999999985 58999999998532 21 136899999998654321 122233345777653
Q ss_pred CC----CCCCCC-CCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhc-hHHHHcCCceEEECCCcccchhhhhhcCCC
Q 006791 94 YK----LPNIPE-KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRNP 167 (631)
Q Consensus 94 ~~----~p~~~~-~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~L-dyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~ 167 (631)
.+ +|..++ +++||||+||++|+.. |+|++|+++| ||||+||||+||||||+++ +
T Consensus 124 ~w~~~~~~~~~~~~~~~iYe~hv~~~~~~----------g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~----------~ 183 (613)
T TIGR01515 124 KWQEKRKAKTPYEKPVSIYELHLGSWRHG----------LSYRELADQLIPYVKELGFTHIELLPVAEH----------P 183 (613)
T ss_pred hhhhcccccCcccCCceEEEEehhhccCC----------CCHHHHHHHHHHHHHHcCCCEEEECCcccC----------C
Confidence 22 222233 4689999999999752 9999999996 9999999999999999998 3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcC
Q 006791 168 RDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 247 (631)
Q Consensus 168 ~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~y 247 (631)
. ..+|||++.+||+|+++|||. +|||+||++||++||+||||+|+||++. ++..+..|++. +.|
T Consensus 184 ~---~~~wGY~~~~y~~~~~~~Gt~--------~dlk~lV~~~H~~Gi~VilD~V~NH~~~---~~~~~~~~~~~--~~y 247 (613)
T TIGR01515 184 F---DGSWGYQVTGYYAPTSRFGTP--------DDFMYFVDACHQAGIGVILDWVPGHFPK---DDHGLAEFDGT--PLY 247 (613)
T ss_pred C---CCCCCCCcccCcccccccCCH--------HHHHHHHHHHHHCCCEEEEEecccCcCC---ccchhhccCCC--cce
Confidence 1 368999999999999999997 9999999999999999999999999997 33334345432 334
Q ss_pred eeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEeccccc-ccCCC---C----------CCCCCh
Q 006791 248 YMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGTD---G----------SPLNAP 313 (631)
Q Consensus 248 y~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l-~~~~~---~----------~~~~~~ 313 (631)
+..++.......++ .+++|+++|+||++|+++++||++||||||||||++..+ +.+.. + ...+..
T Consensus 248 ~~~~~~~~~~~~w~-~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (613)
T TIGR01515 248 EHKDPRDGEHWDWG-TLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAV 326 (613)
T ss_pred eccCCccCcCCCCC-CceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHH
Confidence 33332222122222 468999999999999999999999999999999987544 22110 1 112345
Q ss_pred HHHHHHHh--ccccCCCeEeeccCCCCCccccCCCC-CccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCcccccc
Q 006791 314 PLIRAIAK--DAILSRCKIIAEPWDCRGLYLVGKFP-NWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRV 390 (631)
Q Consensus 314 ~~l~~i~~--~~~~~~~~li~E~w~~~~~~~~~~~~-~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 390 (631)
.+++++++ +...|++++|||.+..........+. ...+.+.||+.|.+.++.++..+.. ...+..........+.
T Consensus 327 ~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~- 404 (613)
T TIGR01515 327 DFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPV-ERQYHHQLITFSMLYA- 404 (613)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhChh-hHhhccccccHHHHHH-
Confidence 78888876 45679999999976432111100000 1123489999999999988864422 1222110000000000
Q ss_pred CCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcC
Q 006791 391 NKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQ 470 (631)
Q Consensus 391 ~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~p 470 (631)
.. ....+++|||+...... ...+. ..|. .....+++|++++++||+|
T Consensus 405 -~~---e~~~~~~sHD~~~~g~~-------~i~~~----------------~~g~------~~~~~~~~r~~~~~~~t~p 451 (613)
T TIGR01515 405 -FS---ENFVLPLSHDEVVHGKK-------SLLNK----------------MPGD------YWQKFANYRALLGYMWAHP 451 (613)
T ss_pred -hh---hccccCCCCCCcccCcc-------cHHHh----------------CCCc------hHHHHHHHHHHHHHHHhCC
Confidence 00 12236788998432110 00000 0011 0012456888999999999
Q ss_pred CceeeecccccccccCCCCCCCCCCCCCCcccccccc-cccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeeccccC
Q 006791 471 GTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE-TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWD 549 (631)
Q Consensus 471 GiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~-~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~~~ 549 (631)
|+||||||+|+|+.++.. ...+|+|+..+ .....+++|+|+|++||+++|+|+.+++... .+.|... .
T Consensus 452 G~plif~G~E~g~~~~~~--------~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~~~~-~~~~~~~--~ 520 (613)
T TIGR01515 452 GKKLLFMGSEFAQGSEWN--------DTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDFDPQ-GFEWIDV--D 520 (613)
T ss_pred CCCEEEcchhcCcCCCCC--------CCccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCCCCC-ceEEEEc--c
Confidence 999999999999976432 23589998643 2456899999999999999999998887542 3555522 1
Q ss_pred CCCCcEEEEEEecCC-CCeEEEEEeCCCCcEE---EEcCCCCCCCCeEEEEeCCCCCC--C-CCC-----CCCC--CC--
Q 006791 550 NYDSKFLAFTLHDNN-GADIYLAFNAHDFFVK---VSLPPPPPKRQWFRVVDTNLESP--D-DIV-----PEGA--AG-- 613 (631)
Q Consensus 550 ~~~~~vla~~r~~~~-~~~~lvv~N~~~~~~~---~~lp~~~~~~~~~~~~~~~~~~~--~-~~~-----~~~~--~~-- 613 (631)
+...+|++|.|...+ ++.++||+|++..+.. +.+|. ++.|+.+++|+...- . ... .... .+
T Consensus 521 ~~~~~vlaf~R~~~~~~~~~~vv~N~~~~~~~~Y~i~~p~---~g~~~~il~Sd~~~~gG~g~~~~~~~~~~~~~~~g~~ 597 (613)
T TIGR01515 521 DDEQSVFSFIRRAKKHGEALVIICNFTPVVRHQYRVGVPQ---PGQYREVLNSDSETYGGSGQGNKGPLSAEEGALHGRP 597 (613)
T ss_pred cCCCCEEEEEEecCCCCCeEEEEEeCCCCCccceEeCCCC---CCeEEEEEeCChhhcCCCCcCCCCceeccccccCCCC
Confidence 245789999998752 4579999999987543 55554 479999999876431 0 000 0000 01
Q ss_pred CCCeEEEcCcEEEEEE
Q 006791 614 TGSTYNLSPYSSILLE 629 (631)
Q Consensus 614 ~~~~~~l~p~s~~vl~ 629 (631)
....|.|||++++||+
T Consensus 598 ~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 598 CSLTMTLPPLATSWLR 613 (613)
T ss_pred CEEEEEeCCcEEEEeC
Confidence 1235899999999985
No 16
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.4e-69 Score=617.07 Aligned_cols=512 Identities=21% Similarity=0.305 Sum_probs=357.6
Q ss_pred CCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCccchhccccccccccCCCCCCCC
Q 006791 13 TGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGD 92 (631)
Q Consensus 13 ~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 92 (631)
.++||+++||++. .|..|+|+|++.. |.. ..+.||||+.+...+.. .|. +.+. +|.|.+
T Consensus 673 ~~GvW~~fipg~~-~G~~Yky~i~~~~----g~~----~~k~DPyA~~~e~~p~~------aS~-----V~d~-~~~w~d 731 (1224)
T PRK14705 673 SSGVWELFIPGVV-AGACYKFEILTKA----GQW----VEKADPLAFGTEVPPLT------ASR-----VVEA-SYAFKD 731 (1224)
T ss_pred CCCEEEEEECCCC-CCCEEEEEEEcCC----CcE----EecCCccccccccCCCC------CeE-----EeCC-CCCcCC
Confidence 4569999999975 8999999998753 322 25689999988754421 122 2222 488876
Q ss_pred CCCC----CCC-CCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhh-chHHHHcCCceEEECCCcccchhhhhhcCC
Q 006791 93 NYKL----PNI-PEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK-IPHLLELGINAVELLPVFEFDEMEFQRRRN 166 (631)
Q Consensus 93 ~~~~----p~~-~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~-LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~ 166 (631)
+.+. +.. ..++++|||+|+++|+.. |+|++++++ |||||+|||||||||||+++
T Consensus 732 ~~W~~~r~~~~~~~~p~~IYEvHvgsf~~~----------~~~~~l~~~lldYlk~LGvt~IeLmPv~e~---------- 791 (1224)
T PRK14705 732 AEWMSARAERDPHNSPMSVYEVHLGSWRLG----------LGYRELAKELVDYVKWLGFTHVEFMPVAEH---------- 791 (1224)
T ss_pred hhhhhccccCCCCcCCcEEEEEEecccccC----------CchHHHHHHHHHHHHHhCCCEEEECccccC----------
Confidence 5322 122 247899999999999862 899999998 69999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCc
Q 006791 167 PRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKV 246 (631)
Q Consensus 167 ~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~ 246 (631)
|. .++|||++++||+|+++|||. +|||+||++||++||+||||+|+||++. +...+..|++. ..
T Consensus 792 p~---~~swGY~~~~y~ap~~ryGt~--------~dfk~lVd~~H~~GI~VILD~V~nH~~~---d~~~l~~fdg~--~~ 855 (1224)
T PRK14705 792 PF---GGSWGYQVTSYFAPTSRFGHP--------DEFRFLVDSLHQAGIGVLLDWVPAHFPK---DSWALAQFDGQ--PL 855 (1224)
T ss_pred CC---CCCCCCCccccCCcCcccCCH--------HHHHHHHHHHHHCCCEEEEEeccccCCc---chhhhhhcCCC--cc
Confidence 32 478999999999999999997 9999999999999999999999999986 22233456553 34
Q ss_pred CeeeCCC-CCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEeccc-ccccCCC---CCC----------CC
Q 006791 247 YYMVDGT-GQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGTD---GSP----------LN 311 (631)
Q Consensus 247 yy~~~~~-~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~-~l~~~~~---~~~----------~~ 311 (631)
|++.++. +....| + ...+|+++++||++|+++++||+++|||||||||++. +++.++. |.| .+
T Consensus 856 y~~~d~~~g~~~~W-g-~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ 933 (1224)
T PRK14705 856 YEHADPALGEHPDW-G-TLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLE 933 (1224)
T ss_pred cccCCcccCCCCCC-C-CceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChH
Confidence 4444433 333333 2 2468999999999999999999999999999999865 4444431 222 24
Q ss_pred ChHHHHHHHh--ccccCCCeEeeccCCCCCcccc-CCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCcccc
Q 006791 312 APPLIRAIAK--DAILSRCKIIAEPWDCRGLYLV-GKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLY 388 (631)
Q Consensus 312 ~~~~l~~i~~--~~~~~~~~li~E~w~~~~~~~~-~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 388 (631)
+..++++++. ....|++++|||.+..-..... -......+.+.||..|++.+..|+..+..........++.+.. |
T Consensus 934 ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~-y 1012 (1224)
T PRK14705 934 AISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSLV-Y 1012 (1224)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHHH-H
Confidence 5678888876 3457899999997654211110 0001122349999999999999998876543322222222211 1
Q ss_pred ccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 006791 389 RVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMV 468 (631)
Q Consensus 389 ~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~ 468 (631)
. . .....+..+||+.... |....+.+ .|. ...+...+|++++++|+
T Consensus 1013 a--~---~e~fvl~~SHDevvhg-------k~sl~~km----------------~Gd------~~~k~a~lR~~~a~~~~ 1058 (1224)
T PRK14705 1013 A--F---TENFLLPISHDEVVHG-------KGSMLRKM----------------PGD------RWQQLANLRAFLAYQWA 1058 (1224)
T ss_pred H--h---hcCEeccccccccccc-------chhHHHhC----------------CCc------HHHHHHHHHHHHHHHHh
Confidence 1 0 0122334589975311 11111111 111 11234567889999999
Q ss_pred cCCceeeecccccccccCCCCCCCCCCCCCCccccccccc-ccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeeccc
Q 006791 469 SQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDN 547 (631)
Q Consensus 469 ~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~-~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~ 547 (631)
+||+||||||+|||...+.+ ....++|...+. .+..++.|+|+|++||+++|+|...+.... .+.|+...
T Consensus 1059 ~PGk~LlFMG~Efgq~~ew~--------~~~~LdW~ll~~~~h~~~~~~~rdLn~ly~~~paL~~~d~~~~-gf~wi~~~ 1129 (1224)
T PRK14705 1059 HPGKQLIFMGTEFGQEAEWS--------EQHGLDWFLADIPAHRGIQLLTKDLNELYTSTPALYQRDNEPG-GFQWINGG 1129 (1224)
T ss_pred cCCcCEEECccccCCCCCcc--------ccccCCCcccCChhhHHHHHHHHHHHHHHhcChhhhccCCCCC-ceEEeecC
Confidence 99999999999999987543 234689998663 456899999999999999999998877543 67787432
Q ss_pred cCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEE-EEcCCCCCCCCeEEEEeCCCCCC--CCCCC------CCCCC----C
Q 006791 548 WDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVK-VSLPPPPPKRQWFRVVDTNLESP--DDIVP------EGAAG----T 614 (631)
Q Consensus 548 ~~~~~~~vla~~r~~~~~~~~lvv~N~~~~~~~-~~lp~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~----~ 614 (631)
+.+++|++|.|+.++++.++||+|++..++. +.|..+ ..+.|++++||+...- +.... ..... .
T Consensus 1130 --d~~~~vlaf~R~~~~~~~vlvv~Nftp~~~~~y~igvp-~~G~y~eilnsd~~~ygGsg~~n~~~~~~~~~~~~g~~~ 1206 (1224)
T PRK14705 1130 --DADRNVLSFIRWDGDGNPLVCAINFSGGPHKGYTLGVP-AAGAWTEVLNTDHETYGGSGVLNPGSLKATTEGQDGQPA 1206 (1224)
T ss_pred --CCCCcEEEEEEeCCCCCEEEEEEcCCCCCccCceECCC-CCCeEEEEEeCchhhcCCCCcCCCCceeecccccCCCCc
Confidence 5567899999997645679999999987765 444322 2579999999986431 11100 00111 1
Q ss_pred CCeEEEcCcEEEEEEe
Q 006791 615 GSTYNLSPYSSILLEA 630 (631)
Q Consensus 615 ~~~~~l~p~s~~vl~~ 630 (631)
+..|+|||++++||+.
T Consensus 1207 s~~i~lPpl~~~~~~~ 1222 (1224)
T PRK14705 1207 TLTVTLPPLGASFFAP 1222 (1224)
T ss_pred eEEEEecCCEEEEEEE
Confidence 2368999999999975
No 17
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.6e-69 Score=598.17 Aligned_cols=405 Identities=20% Similarity=0.305 Sum_probs=308.4
Q ss_pred CCCCCceEEEEecCcccCCCCCCCC------------------------------CCCCcCHHHHHhhchHHHHcCCceE
Q 006791 99 IPEKDLVIYEMNVRAFTGDESSGLD------------------------------PEIRGSYLGLIQKIPHLLELGINAV 148 (631)
Q Consensus 99 ~~~~~~iiYei~v~~F~~~~~~~~~------------------------------~~~~G~~~gl~~~LdyLk~LGvt~I 148 (631)
.|++++|||||+|++|.+++.++.. ..++|||+||++||||||+||||+|
T Consensus 117 ~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kLdYL~~LGv~~I 196 (598)
T PRK10785 117 QWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTAL 196 (598)
T ss_pred chhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHHHHHHHcCCCEE
Confidence 3579999999999999988774321 1347999999999999999999999
Q ss_pred EECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccC
Q 006791 149 ELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 228 (631)
Q Consensus 149 ~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~ 228 (631)
||+|||++ + .+|||++.||++|||+|||. ++||+||++||++||+||||+|+|||+.
T Consensus 197 ~L~Pif~s----------~-----s~hgYd~~Dy~~iDp~~Gt~--------~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 197 YLNPIFTA----------P-----SVHKYDTEDYRHVDPQLGGD--------AALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred EeCCcccC----------C-----CCCCcCcccccccCcccCCH--------HHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 99999998 3 57899999999999999998 9999999999999999999999999997
Q ss_pred CCCCCCcccccCC--------CCC--CcCeeeCCCCCccccCCC--CCCCCCCCHHHHHHHHH----HHHHHHHH-cCcc
Q 006791 229 ADDANPYTTSFRG--------IDN--KVYYMVDGTGQLLNYAGC--GNTLNCNHPVVMELILD----SLRHWVVE-YHVD 291 (631)
Q Consensus 229 ~~~~~~~~~~~~~--------~~~--~~yy~~~~~~~~~~~~~~--~~~ln~~~~~v~~~i~~----~~~~W~~e-~giD 291 (631)
+|+|+..... .+. ..||.+.+.+.+.+|.+. .|+||++||+|+++|++ ++++|+++ ||||
T Consensus 254 ---~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giD 330 (598)
T PRK10785 254 ---SHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNID 330 (598)
T ss_pred ---CCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCc
Confidence 7888764321 111 357777766666666654 58999999999999995 89999986 9999
Q ss_pred EEEEecccccccCCCCCCCCChHHHHHHHh--ccccCCCeEeeccCCCCCccccCCCCCccchhhhhh-hhHHHHHHHHc
Q 006791 292 GFRFDLASVLCRGTDGSPLNAPPLIRAIAK--DAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNG-KYRDDLRKFIK 368 (631)
Q Consensus 292 GfR~D~~~~l~~~~~~~~~~~~~~l~~i~~--~~~~~~~~li~E~w~~~~~~~~~~~~~~~~~~~~n~-~f~~~i~~~~~ 368 (631)
|||+|+|.++.... .......+++++++ ....|++++|||.|.....++.+... .+.+|+ .|...++.++.
T Consensus 331 G~RlDva~~v~~~~--~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~l~~~~~----d~~mny~~f~~~~~~~~~ 404 (598)
T PRK10785 331 GWRLDVVHMLGEGG--GARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQWLQADVE----DAAMNYRGFAFPLRAFLA 404 (598)
T ss_pred EEEEecHhHhcccc--CccccHHHHHHHHHHHHhhCCCeEEEEeccCChhhhccCccc----cccccchhhhhHHHHHhh
Confidence 99999999886532 12223456777665 34678999999999765444443211 266775 68888888886
Q ss_pred CCC-------CcHHHHHHHhhCCccccccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCC
Q 006791 369 GDP-------GMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCG 441 (631)
Q Consensus 369 ~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~ 441 (631)
+.. .....+...+......+.. ......+||++|||+.|+...+..
T Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~n~l~nHD~~R~~~~~~~------------------------- 457 (598)
T PRK10785 405 NTDIAYHPQQIDAQTCAAWMDEYRAGLPH--QQQLRQFNQLDSHDTARFKTLLGG------------------------- 457 (598)
T ss_pred ccccccCccCCCHHHHHHHHHHHHHhCCH--HHHHHhhhccCCCccchhhhhhCC-------------------------
Confidence 532 1223444433322111110 011245799999999987654410
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHhcCCceeeecccccccccCCCCCCCCCCCCCCcccccccccccchHHHHHHHHH
Q 006791 442 FEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVI 521 (631)
Q Consensus 442 ~~g~~~~~~~~~~~~~~~~~a~~~l~~~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~~~~~~~~Li 521 (631)
..+++|+|++++||+||+||||||||+|+++.. .++.|.+|+|+... ...+++++||+||
T Consensus 458 -------------~~~~~kla~~ll~t~pGiP~IYYGdE~G~~g~~------dp~~R~~m~W~~~~-~~~~l~~~~r~Li 517 (598)
T PRK10785 458 -------------DKARMPLALVWLFTWPGVPCIYYGDEVGLDGGN------DPFCRKPFPWDEAK-QDGALLALYQRMI 517 (598)
T ss_pred -------------CHHHHHHHHHHHHhCCCCcEEEeeeeccccCCC------CCCccCCcCCCccc-CchHHHHHHHHHH
Confidence 135688999999999999999999999998642 34568899998754 3458999999999
Q ss_pred HHHhcCCCCCCcCCCCCCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCC--CCCCCCeEEE
Q 006791 522 KFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPP--PPPKRQWFRV 595 (631)
Q Consensus 522 ~lR~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~~~~~lvv~N~~~~~~~~~lp~--~~~~~~~~~~ 595 (631)
+|||++|+|+.|++..+ ..++++++|.|..+ ++.++|++|++ ..+++.||. ....+.|...
T Consensus 518 ~lRk~~~aL~~G~~~~l-----------~~~~~v~af~R~~~-~~~vlVviN~s-~~~~v~lp~~~~~~~~~~~~~ 580 (598)
T PRK10785 518 ALRKKSQALRRGGCQVL-----------YAEGNVVVFARVLQ-QQRVLVAINRG-EACEVVLPASPLLNVAQWQRK 580 (598)
T ss_pred HHHhhCcccccCcEEEE-----------EeCCCEEEEEEECC-CCEEEEEEECC-CCeEEecccccccCCcceeec
Confidence 99999999999987543 23467999999887 78999999999 678888885 2234455543
No 18
>PLN02960 alpha-amylase
Probab=100.00 E-value=7.8e-65 Score=553.64 Aligned_cols=523 Identities=18% Similarity=0.245 Sum_probs=337.6
Q ss_pred cCCCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCccchhcccccccccc---CCC
Q 006791 11 NKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFE---SLP 87 (631)
Q Consensus 11 ~~~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 87 (631)
.+.| .|+++||++ .+|.+|+|+|+..+. ....+||||+.+......+ ...+++.+ ..+
T Consensus 322 ~~~g-w~~~~ip~~-~hG~~Yky~v~~~~g---------~~~~vdpyA~~~qp~~~~~--------~~~~v~~d~~~~~~ 382 (897)
T PLN02960 322 GRKA-WLKKYIPAI-PHGSKYRVYFNTPDG---------PLERVPAWATYVLPDPDGK--------QWYAIHWEPPPEEA 382 (897)
T ss_pred cCCc-EEEEEccCC-CCCCEEEEEEEeCCC---------ceEECCCcceeEeecCCCc--------cceEEEeCCCCCCC
Confidence 3344 888899986 489999999986431 1246999999884322110 00112222 246
Q ss_pred CCCCCCCCCCCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhh-chHHHHcCCceEEECCCcccchhhhhhcCC
Q 006791 88 FDWGDNYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK-IPHLLELGINAVELLPVFEFDEMEFQRRRN 166 (631)
Q Consensus 88 ~~w~~~~~~p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~-LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~ 166 (631)
|+|.++ . |. ++++++||||||+.|+.. .+ .|||++++++ |||||+||||+||||||+++
T Consensus 383 y~W~~~-~-p~-~~~~~vIYElHvg~~~~e--~~-----~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~---------- 442 (897)
T PLN02960 383 YKWKFE-R-PK-VPKSLRIYECHVGISGSE--PK-----ISSFKEFTQKVLPHVKKAGYNAIQLIGVQEH---------- 442 (897)
T ss_pred CCCCCC-C-CC-CCCCcEEEEEecccccCC--CC-----CCCHHHHHHHHHHHHHHcCCCEEEECCcccC----------
Confidence 999865 2 33 457899999999988642 22 3999999977 99999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCc
Q 006791 167 PRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKV 246 (631)
Q Consensus 167 ~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~ 246 (631)
+. ..+|||++++||+|+++|||. +|||+||++||++||+||||||+||++.+. .-.+..|++.. ..
T Consensus 443 ~~---~~swGY~~~~yfa~~~~yGtp--------~dfk~LVd~aH~~GI~VILDvV~NH~~~d~--~~~L~~FDG~~-~~ 508 (897)
T PLN02960 443 KD---YSSVGYKVTNFFAVSSRFGTP--------DDFKRLVDEAHGLGLLVFLDIVHSYAAADE--MVGLSLFDGSN-DC 508 (897)
T ss_pred CC---CCCCCCCcccCCCcccccCCH--------HHHHHHHHHHHHCCCEEEEEecccccCCcc--ccchhhcCCCc-cc
Confidence 21 468999999999999999997 999999999999999999999999999831 11234566642 23
Q ss_pred CeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccc-cccCC-----CC---------CCCC
Q 006791 247 YYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASV-LCRGT-----DG---------SPLN 311 (631)
Q Consensus 247 yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~-l~~~~-----~~---------~~~~ 311 (631)
||..+..+. ...+|+ ..+|+.+++||++|+++++||++||||||||||+++. ++.+. .| ...+
T Consensus 509 Yf~~~~~g~-~~~WG~-~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~ 586 (897)
T PLN02960 509 YFHSGKRGH-HKRWGT-RMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRD 586 (897)
T ss_pred eeecCCCCc-cCCCCC-cccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCch
Confidence 444333332 233343 5689999999999999999999999999999997754 44331 11 1234
Q ss_pred ChHHHHHHHh--ccccCCCeEeeccCCCCCccccC-CCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCcccc
Q 006791 312 APPLIRAIAK--DAILSRCKIIAEPWDCRGLYLVG-KFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLY 388 (631)
Q Consensus 312 ~~~~l~~i~~--~~~~~~~~li~E~w~~~~~~~~~-~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 388 (631)
+..+|+.++. ....|++++|||....-...... ......+...||..+.+.+..++..... ...-...+.++...
T Consensus 587 Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~-r~~~~~~l~~s~~~- 664 (897)
T PLN02960 587 ALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPD-QEWSMSKIVSTLVK- 664 (897)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHHHHHHHHhCcC-CCCChhccEeeecc-
Confidence 5678888876 35579999999976432211110 0011123388999999999888876432 11111234443321
Q ss_pred ccCCCCCCcceeeeeccCCCc-----hhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHH-HHHHHHH
Q 006791 389 RVNKRKPYHSINFIIAHDGFT-----LYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALR-SRQMKNF 462 (631)
Q Consensus 389 ~~~~~~~~~~~nf~~~HD~~~-----l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~a 462 (631)
....+.+.++|++|||+.- +.+.+.... ..++- .......+... .++++ +
T Consensus 665 --~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~----------------~~k~~-----~~~~~~lRa~al~~~~r-l 720 (897)
T PLN02960 665 --NKENADKMLSYAENHNQSISGGKSFAEILLGKN----------------KESSP-----AVKELLLRGVSLHKMIR-L 720 (897)
T ss_pred --CcCCcceEEEEecCcCccccCcccHHHHCCCch----------------hhhhc-----ccChhhhhhhhHHHHHH-H
Confidence 1235568899999999932 111111000 00000 00000000000 11222 2
Q ss_pred HHHHHhcCCceeeecccccccccCCCC-CCCC-CCCCCCccccccccc-ccchHHHHHHHHHHHHhcCCCCCCcCCCCCC
Q 006791 463 HLALMVSQGTPMMLMGDEYGHTRYGNN-NSYG-HDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNIN 539 (631)
Q Consensus 463 ~~~l~~~pGiP~iy~G~E~g~~~~g~~-n~y~-~~~~~~~~~W~~~~~-~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~ 539 (631)
+++++ .||+||+|||+|||......- ++-+ ..-....++|+..+. .+..+++|+|+|++||+++|+|+.+..
T Consensus 721 lt~~~-~Pg~pLlFMG~EFGh~e~~~~PdP~n~~tf~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~---- 795 (897)
T PLN02960 721 ITFTL-GGSAYLNFMGNEFGHPERVEFPRASNNFSFSLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLP---- 795 (897)
T ss_pred HHHHh-CCCCCEeeCccccCChhhhhCcCCCCccccccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcc----
Confidence 34444 499999999999997432100 0000 011235789998663 356899999999999999999976543
Q ss_pred ceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCc--EEEEcCCCCCCCCeEEEEeCCCCCC--CCCC-C------
Q 006791 540 DVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFF--VKVSLPPPPPKRQWFRVVDTNLESP--DDIV-P------ 608 (631)
Q Consensus 540 ~~~~~~~~~~~~~~~vla~~r~~~~~~~~lvv~N~~~~~--~~~~lp~~~~~~~~~~~~~~~~~~~--~~~~-~------ 608 (631)
|... .+..++||+|.| ..++||+|++... ..+.+..+ ..+.|+.+++|+...- .... .
T Consensus 796 ---~i~~--~d~~~~Viaf~R-----~~llvV~NFsp~~~~~~Y~vgvP-~~G~y~eilNSD~~~yGG~g~~~~~~~~~~ 864 (897)
T PLN02960 796 ---NIHH--VNDTSMVISFTR-----GPLLFAFNFHPTNSYEEYEVGVE-EAGEYELILNTDEVKYGGQGRLTEDQYLQR 864 (897)
T ss_pred ---eeee--ecCCCCEEEEEe-----CCeEEEEeCCCCCcCcCceECCC-CCCcEEEEEeCchhhcCCCCccCCCcceee
Confidence 2211 145678999999 2489999999642 23333322 3579999999976431 1111 0
Q ss_pred -CCCC--C--CCCeEEEcCcEEEEEEe
Q 006791 609 -EGAA--G--TGSTYNLSPYSSILLEA 630 (631)
Q Consensus 609 -~~~~--~--~~~~~~l~p~s~~vl~~ 630 (631)
.... + ....|+|||++++||+.
T Consensus 865 t~~~~~~g~~~si~i~LPp~sa~v~k~ 891 (897)
T PLN02960 865 TKSKRIDGLRNCLELTLPSRSAQVYKL 891 (897)
T ss_pred ccccccCCCCceEEEEeCCCEEEEEEE
Confidence 0000 1 12358899999999975
No 19
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=9.3e-66 Score=561.43 Aligned_cols=437 Identities=19% Similarity=0.272 Sum_probs=311.8
Q ss_pred CCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCC
Q 006791 100 PEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST 179 (631)
Q Consensus 100 ~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~ 179 (631)
||+++|||||+|++|.+++.++. |||+||+++||||++||||+|||+||+++ | ...|||++
T Consensus 7 W~~~~v~Yqi~~~~f~d~~~~~~-----Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~----------~----~~~~gY~~ 67 (551)
T PRK10933 7 WWQNGVIYQIYPKSFQDTTGSGT-----GDLRGVTQRLDYLQKLGVDAIWLTPFYVS----------P----QVDNGYDV 67 (551)
T ss_pred hhhcCeEEEEEchHhhcCCCCCC-----cCHHHHHHhhHHHHhCCCCEEEECCCCCC----------C----CCCCCCCc
Confidence 78999999999999999887665 99999999999999999999999999987 3 23589999
Q ss_pred CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCC--CcCeeeCC-----
Q 006791 180 INFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDN--KVYYMVDG----- 252 (631)
Q Consensus 180 ~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~--~~yy~~~~----- 252 (631)
.||++|+|+|||. +|||+||++||++||+||||+|+||++. +|+|+......+. ..||.+.+
T Consensus 68 ~d~~~id~~~Gt~--------~d~~~lv~~~h~~gi~vilD~V~NH~s~---~~~wf~~~~~~~~~y~d~y~~~~~~~~~ 136 (551)
T PRK10933 68 ANYTAIDPTYGTL--------DDFDELVAQAKSRGIRIILDMVFNHTST---QHAWFREALNKESPYRQFYIWRDGEPET 136 (551)
T ss_pred ccCCCcCcccCCH--------HHHHHHHHHHHHCCCEEEEEECCCCccC---chhHHHhhcCCCCCCcCceEecCCCCCC
Confidence 9999999999998 9999999999999999999999999997 8888865432222 34665531
Q ss_pred -CCCccc--------------------cCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCC--CCC-
Q 006791 253 -TGQLLN--------------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGT--DGS- 308 (631)
Q Consensus 253 -~~~~~~--------------------~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~--~~~- 308 (631)
...+.. |...+++||++||+|+++|++++++|+ ++||||||+|+|+++.++. ...
T Consensus 137 ~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~ 215 (551)
T PRK10933 137 PPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDL 215 (551)
T ss_pred CCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCc
Confidence 111110 112368999999999999999999999 7999999999999998752 110
Q ss_pred ----------CCCChHHHHHHHhccc-cCCCeEeeccCCCCC----ccccCCCCCccchhhhhhhhHHHHHHHHcCCCC-
Q 006791 309 ----------PLNAPPLIRAIAKDAI-LSRCKIIAEPWDCRG----LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPG- 372 (631)
Q Consensus 309 ----------~~~~~~~l~~i~~~~~-~~~~~li~E~w~~~~----~~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~~- 372 (631)
..+...+++++++... .+++++|||.|.... .+....-.. .... ..|......++.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vgE~~~~~~~~~~~y~~~~~~~--~~~~--fnf~~~~~~~~~~~~~~ 291 (551)
T PRK10933 216 DGDGRRFYTDGPRAHEFLQEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSE--LSMT--FNFHHLKVDYPNGEKWT 291 (551)
T ss_pred ccccccccCCChHHHHHHHHHHHHhhcccCcEEEEeecCCCHHHHHHhhcccCCe--eeeE--ecHHHhhhhhccCCccc
Confidence 0123467888876422 235789999986421 111000000 1122 3344444555544321
Q ss_pred ----cHHHHHHHhhCCccccccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCc
Q 006791 373 ----MKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDD 448 (631)
Q Consensus 373 ----~~~~~~~~l~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~ 448 (631)
....+...+.. +...........+|++|||+.|+.+.+.. +
T Consensus 292 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~fl~NHD~~R~~sr~g~-------------------------------~ 336 (551)
T PRK10933 292 LAKPDFVALKTLFRH----WQQGMHNVAWNALFWCNHDQPRIVSRFGD-------------------------------E 336 (551)
T ss_pred ccccCHHHHHHHHHH----HHHhhcccCeeccccCCCCcccHHHHcCC-------------------------------c
Confidence 11222222211 11111111245679999999987654421 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeecccccccccCCC-------------------------------CCCCCCCCC
Q 006791 449 ASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGN-------------------------------NNSYGHDTA 497 (631)
Q Consensus 449 ~~~~~~~~~~~~~a~~~l~~~pGiP~iy~G~E~g~~~~g~-------------------------------~n~y~~~~~ 497 (631)
...+...++++++++||+||+|+||||||+||++..- .+...++.+
T Consensus 337 ---~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~ 413 (551)
T PRK10933 337 ---GEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNS 413 (551)
T ss_pred ---hhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCC
Confidence 0123345788889999999999999999999987310 011246778
Q ss_pred CCcccccccc--------------------------cccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeeccccCCC
Q 006791 498 INNFQWGQLE--------------------------TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNY 551 (631)
Q Consensus 498 ~~~~~W~~~~--------------------------~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~~~~~ 551 (631)
|.||+|+... .++.++++|||+||+|||++|+|+.|++..+ ...
T Consensus 414 RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~----------~~~ 483 (551)
T PRK10933 414 RTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDL----------LPN 483 (551)
T ss_pred ccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEe----------ccC
Confidence 9999998754 1346899999999999999999999987643 123
Q ss_pred CCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCcEEEEEEeC
Q 006791 552 DSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEAK 631 (631)
Q Consensus 552 ~~~vla~~r~~~~~~~~lvv~N~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~vl~~~ 631 (631)
+..|++|.|... ++.++||+|++..+++++++.. .+.|+.++++..... .....++|+|+++.|++.|
T Consensus 484 ~~~v~af~R~~~-~~~~lvv~N~s~~~~~~~~~~~--~~~~~~~l~~~~~~~---------~~~~~~~L~p~~~~~~~~~ 551 (551)
T PRK10933 484 HPSLWCYRREWQ-GQTLLVIANLSREPQPWQPGQM--RGNWQLLMHNYEEAS---------PQPCAMTLRPFEAVWWLQK 551 (551)
T ss_pred CCcEEEEEEEcC-CcEEEEEEECCCCCeeeecCcc--cCCceEEeecCcccc---------CCCCcEEECCCeEEEEEeC
Confidence 467999999887 7899999999999999998732 356887776521110 0114589999999999875
No 20
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=4.3e-65 Score=557.53 Aligned_cols=432 Identities=19% Similarity=0.277 Sum_probs=308.9
Q ss_pred CCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCC
Q 006791 100 PEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST 179 (631)
Q Consensus 100 ~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~ 179 (631)
||+++|||||+|++|++++.++. |||+|++++|+||++||||+|||+||+++ + ...+||++
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~-----G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~----------~----~~~~gY~~ 61 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGT-----GDLRGIIEKLDYLKKLGVDYIWLNPFYVS----------P----QKDNGYDV 61 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCc-----cCHHHHHHhHHHHHHcCCCEEEECCcccC----------C----CCCCCCCc
Confidence 68999999999999998877765 99999999999999999999999999998 3 23569999
Q ss_pred CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCC--CcCeeeCC-CC--
Q 006791 180 INFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDN--KVYYMVDG-TG-- 254 (631)
Q Consensus 180 ~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~--~~yy~~~~-~~-- 254 (631)
.||++|+|+|||. ++|++||++||++||+||||+|+||++. +|+|+......+. ..||.+.+ .+
T Consensus 62 ~d~~~id~~~Gt~--------~~~~~lv~~ah~~gi~vilD~v~NH~~~---~~~~f~~~~~~~~~y~~~y~~~~~~~~~ 130 (543)
T TIGR02403 62 SDYYAINPLFGTM--------ADFEELVSEAKKRNIKIMLDMVFNHTST---EHEWFKKALAGDSPYRDFYIWRDPKGKP 130 (543)
T ss_pred cccCccCcccCCH--------HHHHHHHHHHHHCCCEEEEEECcccccc---chHHHHHhhcCCCcccCceEecCCCCCC
Confidence 9999999999998 9999999999999999999999999996 7888864322122 35565531 11
Q ss_pred --Ccc--------------------ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCC---
Q 006791 255 --QLL--------------------NYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP--- 309 (631)
Q Consensus 255 --~~~--------------------~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~--- 309 (631)
.+. .|...+|+||++||+|+++|+++++||+ ++||||||||++++|.++.....
T Consensus 131 ~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~ 209 (543)
T TIGR02403 131 PTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEI 209 (543)
T ss_pred CCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCC
Confidence 110 1122468999999999999999999999 68999999999999975421100
Q ss_pred ----------CCChHHHHHHHhc-cccCCCeEeeccCCCCCc----ccc---CCCCCccchhhhhhhhHHHHHHHHcCCC
Q 006791 310 ----------LNAPPLIRAIAKD-AILSRCKIIAEPWDCRGL----YLV---GKFPNWDRWAEWNGKYRDDLRKFIKGDP 371 (631)
Q Consensus 310 ----------~~~~~~l~~i~~~-~~~~~~~li~E~w~~~~~----~~~---~~~~~~~~~~~~n~~f~~~i~~~~~~~~ 371 (631)
.....+++++++. ...+++++|||.|..... |.. ..++ +.|| |......+..+..
T Consensus 210 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~lvgE~~~~~~~~~~~y~~~~~~~~d-----~~~n--f~~~~~~~~~~~~ 282 (543)
T TIGR02403 210 GDGRRFYTDGPRVHEYLQEMNQEVFGDNDSVTVGEMSSTTIENCIRYSNPENKELS-----MVFT--FHHLKVDYPNGEK 282 (543)
T ss_pred CCCccccCCChHHHHHHHHHHHHhhccCCeEEEEEeCCCCHHHHHhhhCCCCCeeC-----eEEC--hhhhhchhccccc
Confidence 1124577877652 116789999999964311 111 1122 3444 3344444443321
Q ss_pred -----CcHHHHHHHhhCCccccccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCC
Q 006791 372 -----GMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGET 446 (631)
Q Consensus 372 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~ 446 (631)
.....+...+......+ .......++|++|||+.|+...+...
T Consensus 283 ~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~fl~NHD~~R~~s~~g~~----------------------------- 330 (543)
T TIGR02403 283 WTLAKFDFAKLKEIFSTWQTGM---QAGGGWNALFWNNHDQPRAVSRFGDD----------------------------- 330 (543)
T ss_pred cccCCCCHHHHHHHHHHHHHhc---cccCcceeeecCCCChhhHHHhcCCc-----------------------------
Confidence 11122322222111111 01123456799999998876554210
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhcCCceeeecccccccccCCCC-------------------------------CCCCCC
Q 006791 447 DDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN-------------------------------NSYGHD 495 (631)
Q Consensus 447 ~~~~~~~~~~~~~~~a~~~l~~~pGiP~iy~G~E~g~~~~g~~-------------------------------n~y~~~ 495 (631)
...+.+.+|++++++||+||+||||||||+||++.... +...++
T Consensus 331 -----~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd 405 (543)
T TIGR02403 331 -----GEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRD 405 (543)
T ss_pred -----hhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCC
Confidence 01123457788889999999999999999999874210 112456
Q ss_pred CCCCcccccccc--------------------------cccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeeccccC
Q 006791 496 TAINNFQWGQLE--------------------------TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWD 549 (631)
Q Consensus 496 ~~~~~~~W~~~~--------------------------~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~~~ 549 (631)
++|.||+|+... ..+.++++|||+||+|||++|+|+.|++..+ .
T Consensus 406 ~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~----------~ 475 (543)
T TIGR02403 406 NSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFL----------L 475 (543)
T ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEe----------e
Confidence 789999998742 1246899999999999999999999987644 1
Q ss_pred CCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCcEEEEEE
Q 006791 550 NYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 629 (631)
Q Consensus 550 ~~~~~vla~~r~~~~~~~~lvv~N~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~vl~ 629 (631)
..+++|++|.|..+ ++.++||+|++.+++++.||... ..|..++.+..... ....++|+|++++|+.
T Consensus 476 ~~~~~v~a~~R~~~-~~~~lVv~N~s~~~~~~~l~~~~--~~~~~~~~~~~~~~----------~~~~~~L~p~~~~i~~ 542 (543)
T TIGR02403 476 PDDPSVWAYTRTYK-NQKLLVINNFYGEEKTIELPLDL--LSGKILLSNYEEAE----------KDAKLELKPYEAIVLL 542 (543)
T ss_pred cCCCcEEEEEEEcC-CcEEEEEEECCCCCeEeeCCccC--cCceEEEecCCCcC----------CCCcEEECCceEEEEe
Confidence 23357999999887 78999999999999999998643 34666665422110 1256899999999986
No 21
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=9.3e-64 Score=547.15 Aligned_cols=534 Identities=18% Similarity=0.241 Sum_probs=349.1
Q ss_pred CCCcCCCCEEEEEEcC------CCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCccchhccccccc
Q 006791 8 PRVNKTGDIWHICIED------LPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTY 81 (631)
Q Consensus 8 ~~~~~~g~vw~~~i~~------~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~ 81 (631)
|+.....|+|+++||+ ++ +|..|+|+|+..+ |.. ..++||||+.+...+... ... ..++
T Consensus 143 ~M~~~~~GvWe~~ip~~~g~~~~~-~G~~Yky~i~~~~----g~~----~~r~dpya~~~~~~p~~~-----~~~-~~sv 207 (758)
T PLN02447 143 WMTKNEFGVWEIFLPDADGSPAIP-HGSRVKIRMETPD----GRW----VDRIPAWIKYAVQAPGEI-----GAP-YNGV 207 (758)
T ss_pred CceeCCCCEEEEEECCccccccCC-CCCEEEEEEEeCC----CcE----EeecCchHheeeccCCcc-----CCC-CceE
Confidence 3333355699999998 64 8999999998753 211 357999999887654310 000 1112
Q ss_pred cccC---CCCCCCCCCCCCCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHh-hchHHHHcCCceEEECCCcccc
Q 006791 82 EFES---LPFDWGDNYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQ-KIPHLLELGINAVELLPVFEFD 157 (631)
Q Consensus 82 ~~~~---~~~~w~~~~~~p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~-~LdyLk~LGvt~I~L~Pi~~~~ 157 (631)
+.+. .+|.|.+.. |. ..++++|||+||+.|+.. . ..|+|+++++ +|+|||+||||+||||||+++
T Consensus 208 v~dp~~~~~y~w~~~~--~~-~~~~~~IYE~Hvg~~~~~--~-----~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~- 276 (758)
T PLN02447 208 YWDPPEEEKYVFKHPR--PP-RPAALRIYEAHVGMSSEE--P-----KVNSYREFADDVLPRIKALGYNAVQLMAIQEH- 276 (758)
T ss_pred EeCCCCCCCCCCCCCC--CC-CCCCCEEEEEeCCcccCC--C-----CCCCHHHHHHHHHHHHHHcCCCEEEECCcccc-
Confidence 2222 359998652 32 346799999999988642 1 2399999876 599999999999999999998
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCccc
Q 006791 158 EMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT 237 (631)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~ 237 (631)
+ ...+|||++.+||+|+++||+. +|||+||++||++||+||||||+||++..... .+.
T Consensus 277 ---------~---~~~~wGY~~~~~fa~~~~~Gtp--------~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~--gl~ 334 (758)
T PLN02447 277 ---------A---YYGSFGYHVTNFFAVSSRSGTP--------EDLKYLIDKAHSLGLRVLMDVVHSHASKNTLD--GLN 334 (758)
T ss_pred ---------C---CCCCCCcCcccCcccccccCCH--------HHHHHHHHHHHHCCCEEEEEeccccccccccc--ccc
Confidence 2 1468999999999999999997 99999999999999999999999999973211 133
Q ss_pred ccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEeccccc-cc------CCCC---
Q 006791 238 SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CR------GTDG--- 307 (631)
Q Consensus 238 ~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l-~~------~~~~--- 307 (631)
.|++.. ..||+.++.+ +...++. ..+|+++++|+++|+++++||++||||||||||++..| +. ++.+
T Consensus 335 ~fDg~~-~~Yf~~~~~g-~~~~w~~-~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~ 411 (758)
T PLN02447 335 GFDGTD-GSYFHSGPRG-YHWLWDS-RLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYN 411 (758)
T ss_pred ccCCCC-ccccccCCCC-CcCcCCC-ceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcc
Confidence 566543 3566554432 2222222 36999999999999999999999999999999977765 22 1211
Q ss_pred ------CCCCChHHHHHHHh--ccccCCCeEeeccCCCCCcccc-CCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHH
Q 006791 308 ------SPLNAPPLIRAIAK--DAILSRCKIIAEPWDCRGLYLV-GKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILA 378 (631)
Q Consensus 308 ------~~~~~~~~l~~i~~--~~~~~~~~li~E~w~~~~~~~~-~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~ 378 (631)
...++..+|+.++. ....|++++|||.+........ -.-....+.+.||..+.+....+++.+..- .--.
T Consensus 412 ~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~-~~~~ 490 (758)
T PLN02447 412 EYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDE-DWSM 490 (758)
T ss_pred cccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccCCCCcCCcceEECCccchHHHHHHhhCCCc-ccCH
Confidence 23345667888776 4567999999997654321110 000011234999999999999999876521 1111
Q ss_pred HHhhCCccccccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHH
Q 006791 379 TRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQ 458 (631)
Q Consensus 379 ~~l~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (631)
..|..+... .+.....|.|.+|||+....+..... .+..++ .+ ..+.+......+.......
T Consensus 491 ~~l~~sl~~----r~~~E~~I~y~eSHDevv~Gkksl~~---~l~d~~--------my---~~m~~~~~~~~~~~R~~~l 552 (758)
T PLN02447 491 GDIVHTLTN----RRYTEKCVAYAESHDQALVGDKTIAF---WLMDKE--------MY---DGMSTLTPATPVVDRGIAL 552 (758)
T ss_pred HHHHHHHhc----ccccCceEeccCCcCeeecCcchhHh---hhcchh--------hh---hcCCCChhhhhhHHHHHHH
Confidence 222222211 01224788899999997543321000 000000 00 0011111111111112334
Q ss_pred HHHHHHHHHhcCCc-eeeeccccccccc------CCCCCCCCCCCCCCccccccccc---ccchHHHHHHHHHHHHhcCC
Q 006791 459 MKNFHLALMVSQGT-PMMLMGDEYGHTR------YGNNNSYGHDTAINNFQWGQLET---KKNSHYRFFSEVIKFRQSRR 528 (631)
Q Consensus 459 ~~~a~~~l~~~pGi-P~iy~G~E~g~~~------~g~~n~y~~~~~~~~~~W~~~~~---~~~~~~~~~~~Li~lR~~~~ 528 (631)
.|++.+++|++||. +++|||+|||... .+++.+| ...+++|+..+. ....+.+|+|+|++|++++|
T Consensus 553 hkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~----~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~ 628 (758)
T PLN02447 553 HKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSY----DKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYG 628 (758)
T ss_pred HHHHHHHHHhCCCCcceeecccccCCchhccCcccccccCc----ccccCCccccCCCchhhhHHHHHHHHHHHHHhcCc
Confidence 46677789999999 7999999999862 2332222 224579998653 25689999999999999999
Q ss_pred CCCCcCCCCCCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCC--cEEEEcCCCCCCCCeEEEEeCCCCCCCCC
Q 006791 529 VFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDF--FVKVSLPPPPPKRQWFRVVDTNLESPDDI 606 (631)
Q Consensus 529 ~l~~g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~~~~~lvv~N~~~~--~~~~~lp~~~~~~~~~~~~~~~~~~~~~~ 606 (631)
+|..+. .|+.. .+.+++|+||.|. .++||+||+.. -..+.|.. +..+.|+.++||+...-+..
T Consensus 629 ~L~~~~-------~~i~~--~d~~~~Viaf~R~-----~ll~V~NF~p~~s~~~Y~igv-p~~G~y~~ilnSD~~~fGG~ 693 (758)
T PLN02447 629 FLTSEH-------QYVSR--KDEGDKVIVFERG-----DLVFVFNFHPTNSYSDYRVGC-DKPGKYKIVLDSDAWEFGGF 693 (758)
T ss_pred cccCCC-------ceeee--ecCCCCEEEEEeC-----CeEEEEeCCCCCCCCCcEECC-CCCCeEEEEECCCchhcCCC
Confidence 997542 23311 2567899999993 39999999963 22444432 23589999999986432111
Q ss_pred ---C------CCCCC----CCCCeEEEcCcEEEEEEe
Q 006791 607 ---V------PEGAA----GTGSTYNLSPYSSILLEA 630 (631)
Q Consensus 607 ---~------~~~~~----~~~~~~~l~p~s~~vl~~ 630 (631)
. ..... .....|.|||++++||+.
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~s~~v~iP~~~~~vl~~ 730 (758)
T PLN02447 694 GRVDHDADHFTPEGNFDNRPHSFMVYAPSRTAVVYAP 730 (758)
T ss_pred CccCCCccEEecccCcCCCCcEEEEEeCCceEEEEEE
Confidence 0 00001 112358899999999985
No 22
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=1.2e-64 Score=555.52 Aligned_cols=462 Identities=22% Similarity=0.325 Sum_probs=308.1
Q ss_pred CCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCC
Q 006791 100 PEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST 179 (631)
Q Consensus 100 ~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~ 179 (631)
||+++|||||+|++|++++.++. |||+||+++||||++||||+|||+||+++ + ..+|||++
T Consensus 2 W~~~~viYqi~~~~f~d~~~~~~-----Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~----------~----~~~~gY~~ 62 (539)
T TIGR02456 2 WYKDAVFYEVHVRSFFDSNGDGI-----GDFPGLTSKLDYLKWLGVDALWLLPFFQS----------P----LRDDGYDV 62 (539)
T ss_pred ccccceEEEEehhHhhcCCCCCc-----cCHHHHHHhHHHHHHCCCCEEEECCCcCC----------C----CCCCCCCc
Confidence 68999999999999999877664 99999999999999999999999999987 2 24689999
Q ss_pred CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCC-C--CCcCeeeCCCC-C
Q 006791 180 INFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGI-D--NKVYYMVDGTG-Q 255 (631)
Q Consensus 180 ~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~-~--~~~yy~~~~~~-~ 255 (631)
.||++|+|+||+. ++||+||++||++||+||||+|+||++. +|+|++..... + ...||.+.+.+ .
T Consensus 63 ~dy~~vd~~~Gt~--------~df~~Lv~~ah~~Gi~vilD~V~NH~s~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 131 (539)
T TIGR02456 63 SDYRAILPEFGTI--------DDFKDFVDEAHARGMRVIIDLVLNHTSD---QHPWFQEARSNPDGPYRDFYVWSDTDEK 131 (539)
T ss_pred ccccccChhhCCH--------HHHHHHHHHHHHCCCEEEEEeccCcCCC---CCHHHHHHhhCCCCCCCceEEecCCCcc
Confidence 9999999999998 9999999999999999999999999986 78887533211 1 13566552111 0
Q ss_pred c------------c--------------ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCC
Q 006791 256 L------------L--------------NYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 309 (631)
Q Consensus 256 ~------------~--------------~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~ 309 (631)
+ . .+...+|+||+++|+||++|++++++|+ ++||||||||+++++.+..++..
T Consensus 132 ~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~~~ 210 (539)
T TIGR02456 132 YKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGTSC 210 (539)
T ss_pred cccccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCCcc
Confidence 0 0 1223578999999999999999999999 59999999999998865432221
Q ss_pred C---CChHHHHHHHh--ccccCCCeEeeccCCCCC---ccccCCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHh
Q 006791 310 L---NAPPLIRAIAK--DAILSRCKIIAEPWDCRG---LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRI 381 (631)
Q Consensus 310 ~---~~~~~l~~i~~--~~~~~~~~li~E~w~~~~---~~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l 381 (631)
. ...++++++++ +...|++++|||.+.... .|. +..........+|+.+...+...+.. .....+...+
T Consensus 211 ~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~~~~~~~~~~y~-~~~~~~~~d~~f~f~l~~~~~~~l~~--~~~~~l~~~l 287 (539)
T TIGR02456 211 ENLPETHEFLKRLRKMVDREYPGRMLLAEANQWPEEVVAYF-GDEGDPECHMAFNFPVMPRIFMALRR--EDRSPIIDIL 287 (539)
T ss_pred CCCchHHHHHHHHHHHHHHhCCCeEEEEEeCCCHHHHHHhh-CCCCCCeeeeEEChhhhhhhhccccc--CCHHHHHHHH
Confidence 1 12456777665 235689999999753211 111 11000011245666665444322221 1122233222
Q ss_pred hCCccccccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHH--HHHHH
Q 006791 382 SGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKAL--RSRQM 459 (631)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~--~~~~~ 459 (631)
.... .+ ..+...++|++|||+.++..+......+-.+.. +.+.....+.+. ..+..... ..+++
T Consensus 288 ~~~~-~~----~~~~~~~~fl~nHD~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----~~R~~s~~~~~~~~~ 353 (539)
T TIGR02456 288 KETP-DI----PDSCQWCIFLRNHDELTLEMVTDEERDFMYAAY-----APDPRMRINLGI----RRRLAPLLDNDRRRI 353 (539)
T ss_pred HHhh-hc----cCCCceeeecCCCCccCccccChhhhhhhhhhc-----cCCcchhcccch----hhhhhhcccccHHHH
Confidence 2111 11 122356789999999774211110000000000 000000000000 00000000 13568
Q ss_pred HHHHHHHHhcCCceeeecccccccccCCCCCCCCCCCCCCcccccccc--------------------------------
Q 006791 460 KNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE-------------------------------- 507 (631)
Q Consensus 460 ~~a~~~l~~~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~-------------------------------- 507 (631)
++|++++||+||+|+||||||+||.+... ....+..|.+|+|+...
T Consensus 354 kla~~~l~tlpG~P~IYYG~EiGm~~~~~--~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q 431 (539)
T TIGR02456 354 ELLTALLLSLPGSPILYYGDEIGMGDNIW--LGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQ 431 (539)
T ss_pred HHHHHHHHhCCCceEEEechhhcCcCCCc--cCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHH
Confidence 89999999999999999999999975311 11234567899997631
Q ss_pred -cccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCC
Q 006791 508 -TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPP 586 (631)
Q Consensus 508 -~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~~~~~lvv~N~~~~~~~~~lp~~ 586 (631)
..+.+++++||+||+|||++|+|+.|++..+ ...++++++|.|..+ ++.++||+|++.++++++|+..
T Consensus 432 ~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l----------~~~~~~v~~f~R~~~-~~~vlVv~N~s~~~~~v~l~~~ 500 (539)
T TIGR02456 432 LRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFL----------PTGNRRVLAFLREYE-GERVLCVFNFSRNPQAVELDLS 500 (539)
T ss_pred hhCcccHHHHHHHHHHHHhcCcccccCceEEE----------ecCCCCEEEEEEEcC-CcEEEEEEeCCCCCEEeecccc
Confidence 1245799999999999999999999987544 123457999999988 7899999999999999998764
Q ss_pred C-CCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCcEEEEEE
Q 006791 587 P-PKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 629 (631)
Q Consensus 587 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~vl~ 629 (631)
. .+..+.+++.+.... .+...+..|+|+|+++++|+
T Consensus 501 ~~~~~~~~dl~~~~~~~-------~~~~~~~~~~l~p~~~~~~~ 537 (539)
T TIGR02456 501 EFAGRVPVELIGGAPFP-------PVGGDGYLLTLGPHGFYWFR 537 (539)
T ss_pred ccccCcceecccCCccc-------cccCCcceEEECCceEEEEE
Confidence 3 233466666443211 01112357999999999997
No 23
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-63 Score=532.13 Aligned_cols=511 Identities=23% Similarity=0.386 Sum_probs=353.6
Q ss_pred CEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCccchhccccccccccCCCCCCCCC-
Q 006791 15 DIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDN- 93 (631)
Q Consensus 15 ~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~- 93 (631)
++|+++||++. .|++|+|+|.+.. |. ...++||||+.....+.. .+++.+..+|.|.+.
T Consensus 73 G~we~~vp~~~-~G~~Yky~l~~~~----g~----~~~~~DP~a~~~~~~p~~-----------aS~v~~~~~y~W~d~~ 132 (628)
T COG0296 73 GIWELFVPGAP-PGTRYKYELIDPS----GQ----LRLKADPYARRQEVGPHT-----------ASQVVDLPDYEWQDER 132 (628)
T ss_pred ceEEEeccCCC-CCCeEEEEEeCCC----Cc----eeeccCchhhccCCCCCC-----------cceecCCCCccccccc
Confidence 49999999975 8999999999865 21 147899999988654432 123344456899853
Q ss_pred --CCCCCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCC
Q 006791 94 --YKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHM 171 (631)
Q Consensus 94 --~~~p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~ 171 (631)
...+...+++++||||||++|+.. ...|++...+++|||||+||||||+||||.++ |.
T Consensus 133 ~~~~~~~~~~e~~vIYElHvGs~~~~-------~~~~~~e~a~~llpYl~elG~T~IELMPv~e~----------p~--- 192 (628)
T COG0296 133 WDRAWRGRFWEPIVIYELHVGSFTPD-------RFLGYFELAIELLPYLKELGITHIELMPVAEH----------PG--- 192 (628)
T ss_pred ccccccCCCCCCceEEEEEeeeccCC-------CCcCHHHHHHHHhHHHHHhCCCEEEEcccccC----------CC---
Confidence 123344578999999999999871 22499999999999999999999999999999 43
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeC
Q 006791 172 VNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVD 251 (631)
Q Consensus 172 ~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~ 251 (631)
..+|||+++.||||.++|||+ +|||+||++||++||.||||+|+||+++ +..++..|++. ..|.+.+
T Consensus 193 ~~sWGYq~~g~yAp~sryGtP--------edfk~fVD~aH~~GIgViLD~V~~HF~~---d~~~L~~fdg~--~~~e~~~ 259 (628)
T COG0296 193 DRSWGYQGTGYYAPTSRYGTP--------EDFKALVDAAHQAGIGVILDWVPNHFPP---DGNYLARFDGT--FLYEHED 259 (628)
T ss_pred CCCCCCCcceeccccccCCCH--------HHHHHHHHHHHHcCCEEEEEecCCcCCC---CcchhhhcCCc--cccccCC
Confidence 589999999999999999998 9999999999999999999999999998 44567677764 2222223
Q ss_pred CCCCccccCCCCCCC-CCCCHHHHHHHHHHHHHHHHHcCccEEEEeccccc-ccCCC------------C-CCCCChHHH
Q 006791 252 GTGQLLNYAGCGNTL-NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGTD------------G-SPLNAPPLI 316 (631)
Q Consensus 252 ~~~~~~~~~~~~~~l-n~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l-~~~~~------------~-~~~~~~~~l 316 (631)
+..... ..||.-+ |+.+++||+||+++++||+++|||||||+||+..| +.+.. | ....+.+++
T Consensus 260 ~~~~~~--~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl 337 (628)
T COG0296 260 PRRGEH--TDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFL 337 (628)
T ss_pred cccccC--CCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHh
Confidence 332222 2334433 45599999999999999999999999999976654 44321 1 122334555
Q ss_pred HHHHh--ccccCCCeEeeccCCCCCcccc-CCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCC
Q 006791 317 RAIAK--DAILSRCKIIAEPWDCRGLYLV-GKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKR 393 (631)
Q Consensus 317 ~~i~~--~~~~~~~~li~E~w~~~~~~~~-~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 393 (631)
+..++ ....|+++.|+|.|.+...... ...........||+.+......++..++..+..-...++.+.. .
T Consensus 338 ~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~tf~~~------y 411 (628)
T COG0296 338 RNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGKDPVYRKYHHGELTFGLL------Y 411 (628)
T ss_pred hhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHhhHHHhcccCccccccccCCCccccc------c
Confidence 55554 3556788999999876421110 0000112237899998888888887665443332323332211 1
Q ss_pred CCCcceeeeeccCCC--chhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCC
Q 006791 394 KPYHSINFIIAHDGF--TLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQG 471 (631)
Q Consensus 394 ~~~~~~nf~~~HD~~--~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~pG 471 (631)
.+...+.|+.|||+. ....+. +. ++|. .....+.+|+++++|+++||
T Consensus 412 ~~se~~~l~~sHDevvhGk~sl~---------~r----------------m~g~------~~~~~a~lr~~~a~~~~~Pg 460 (628)
T COG0296 412 AFSENVVLPLSHDEVVHGKRSLG---------ER----------------MPGD------AWQKFANLRALAAYMWLHPG 460 (628)
T ss_pred ccceeEeccccccceeecccchh---------cc----------------CCcc------hhhhHHHHHHHHHHHHhCCC
Confidence 334778889999986 221111 11 1111 22356778999999999999
Q ss_pred ceeeecccccccccCCCCCCCCCCCCCCccccccccc---c--cchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeecc
Q 006791 472 TPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLET---K--KNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHED 546 (631)
Q Consensus 472 iP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~---~--~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~ 546 (631)
+|+||||+|+|...+.+. -..++|..+.. . ++.+..+.+.|.++-+..+.+...++... .+.|...
T Consensus 461 k~LLFMG~Efgq~~e~~~--------~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~l~~~~~~~~-~~~W~~~ 531 (628)
T COG0296 461 KPLLFMGEEFGQGREWNF--------FSSLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDPLHEQDFQPE-GFEWIDA 531 (628)
T ss_pred ceeeecchhhccCCCCcc--------cCCCChhhhhhccccchHHHHHHHHHhhHHhhccCCccchhhhccc-CCceeec
Confidence 999999999999886652 23567754442 2 56788999999989999999988877543 6788754
Q ss_pred ccCCCCCcEEEEEEe--cCCCCeEEEEEeCCCCc-EEEEcCCCCCCCCeEEEEeCCCCCCCC---------CCCCCC---
Q 006791 547 NWDNYDSKFLAFTLH--DNNGADIYLAFNAHDFF-VKVSLPPPPPKRQWFRVVDTNLESPDD---------IVPEGA--- 611 (631)
Q Consensus 547 ~~~~~~~~vla~~r~--~~~~~~~lvv~N~~~~~-~~~~lp~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--- 611 (631)
. +...++++|.|. ...++.++|+.|++..+ ..+.++.+ .++.|+.+++|+...-.. +.....
T Consensus 532 ~--~~~~~v~af~R~l~~~~~~~lv~~~n~~~~~~~~y~~~~~-~~g~~~~~lntd~~~~ggs~~~~~~~~~~~~~~~~~ 608 (628)
T COG0296 532 D--DAENSVLAFYRRLLALRHEHLVVVNNFTPVPRVDYRVGVP-VAGRWREVLNTDLAEYGGSGAGNLGLPVSGEDILWH 608 (628)
T ss_pred C--chhhhHHHHHHHHhhcCCceEEEEeCCCCCcccccccCCc-ccccEEEeccchHHHhcCCccccccceecceeeecc
Confidence 2 334489999995 23245688888887643 35555544 467899999985432110 000111
Q ss_pred -CCCCCeEEEcCcEEEEEE
Q 006791 612 -AGTGSTYNLSPYSSILLE 629 (631)
Q Consensus 612 -~~~~~~~~l~p~s~~vl~ 629 (631)
......++|||.+++||+
T Consensus 609 ~~~~~~~~~lpp~~~~~l~ 627 (628)
T COG0296 609 GREWSLSLTLPPLAALVLK 627 (628)
T ss_pred CcceeeEEecCCceeeEee
Confidence 012346889999999986
No 24
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=2.6e-60 Score=522.04 Aligned_cols=402 Identities=16% Similarity=0.220 Sum_probs=270.0
Q ss_pred CCCCCCCceEEEEecCcccCCCCCCCC-------------CCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhh-
Q 006791 97 PNIPEKDLVIYEMNVRAFTGDESSGLD-------------PEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQ- 162 (631)
Q Consensus 97 p~~~~~~~iiYei~v~~F~~~~~~~~~-------------~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~- 162 (631)
...+|++++||+|+|++|.+++.++.. ..++|||+||+++|||||+||||+|||+||+++......
T Consensus 183 ~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~ 262 (683)
T PRK09505 183 APFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGG 262 (683)
T ss_pred CChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCcccccccccccc
Confidence 345689999999999999988854432 245799999999999999999999999999987321110
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCC--C-CCCccccc
Q 006791 163 RRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEAD--D-ANPYTTSF 239 (631)
Q Consensus 163 ~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~--~-~~~~~~~~ 239 (631)
+..+.. ..+.+|||++.||+.+|++||+. +|||+||++||++||+||||+|+||++... + .+.++...
T Consensus 263 g~~g~~-~~~~yhgY~~~D~~~id~~~Gt~--------~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~ 333 (683)
T PRK09505 263 GTKGDF-PHYAYHGYYTLDWTKLDANMGTE--------ADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGAL 333 (683)
T ss_pred ccccCC-CcCCCCCCCccccccCCCCCCCH--------HHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhh
Confidence 000000 01478999999999999999998 999999999999999999999999999531 0 11111110
Q ss_pred -------CCCCCCcCeeeC-----------------CCCCccccCC------------------------CCCCCCCC--
Q 006791 240 -------RGIDNKVYYMVD-----------------GTGQLLNYAG------------------------CGNTLNCN-- 269 (631)
Q Consensus 240 -------~~~~~~~yy~~~-----------------~~~~~~~~~~------------------------~~~~ln~~-- 269 (631)
....+..|+.|. ....+.+|++ ..|+||++
T Consensus 334 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~ 413 (683)
T PRK09505 334 YLSGDENKKTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTEST 413 (683)
T ss_pred hhhccccccccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCc
Confidence 000011111110 0111111111 13556655
Q ss_pred ---------------------CHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCC-ChHHHHHHHh---cc-
Q 006791 270 ---------------------HPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLN-APPLIRAIAK---DA- 323 (631)
Q Consensus 270 ---------------------~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~-~~~~l~~i~~---~~- 323 (631)
||+|+++|++++++|++++||||||+|+++++..+++..... ....+++.++ +.
T Consensus 414 ~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~ 493 (683)
T PRK09505 414 QASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKA 493 (683)
T ss_pred cccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 569999999999999999999999999999998765221110 0111222222 11
Q ss_pred -ccCCCeEeeccCCCCC---ccccCCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCcce
Q 006791 324 -ILSRCKIIAEPWDCRG---LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSI 399 (631)
Q Consensus 324 -~~~~~~li~E~w~~~~---~~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 399 (631)
..++++++||.|..+. .+....|+ +.+|+.|...+...+...... ......+... . .....+
T Consensus 494 ~~~~~~~~vGEvw~~~~~~~~y~~~~fD-----sv~NF~~~~~~~~~~~~~~~l-~~~~~~~~~~---~-----~~~~~l 559 (683)
T PRK09505 494 LDDAPFWMTGEAWGHGVMKSDYYRHGFD-----AMINFDYQEQAAKAVDCLAQM-DPTYQQMAEK---L-----QDFNVL 559 (683)
T ss_pred cccCCeEEEEEecCCchhhHHHHhhcCc-----cccCchHHHHHHHHHHHHHHH-HHHHHHHhhh---c-----Ccccee
Confidence 1235899999997542 22223333 778888877665443211011 1111111110 0 223567
Q ss_pred eeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCceeeeccc
Q 006791 400 NFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGD 479 (631)
Q Consensus 400 nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~pGiP~iy~G~ 479 (631)
+|++|||+.|+...... ..++|+|++++||+||+|+|||||
T Consensus 560 ~FLdNHDt~Rf~s~~~~---------------------------------------~~~~klAaall~tlpGiP~IYYGd 600 (683)
T PRK09505 560 SYLSSHDTRLFFEGGQS---------------------------------------YAKQRRAAELLLLAPGAVQIYYGD 600 (683)
T ss_pred ecccCCChhhhhhhcCc---------------------------------------hHHHHHHHHHHHhCCCCcEEEech
Confidence 89999999887443210 135778999999999999999999
Q ss_pred ccccccCCC-CCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeeccccCCCCCcEEEE
Q 006791 480 EYGHTRYGN-NNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAF 558 (631)
Q Consensus 480 E~g~~~~g~-~n~y~~~~~~~~~~W~~~~~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~vla~ 558 (631)
|+|+++... .++ ..+.|.+|+|+.......+++++||+|++||+++|+|+.|++..+ ..+++++|
T Consensus 601 EiGm~gg~~g~DP--~~~~R~~M~W~~~~~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l------------~~~~~~aF 666 (683)
T PRK09505 601 ESARPFGPTGSDP--LQGTRSDMNWQEVSGKSAALLAHWQKLGQFRARHPAIGAGKQTTL------------SLKQYYAF 666 (683)
T ss_pred hhCccCCCCCCCC--cccccccCCccccccchHHHHHHHHHHHHHHhhCHHhhCCceEEe------------ccCCEEEE
Confidence 999976321 111 124788999987554556899999999999999999999987543 23679999
Q ss_pred EEecCCCCeEEEEEeCC
Q 006791 559 TLHDNNGADIYLAFNAH 575 (631)
Q Consensus 559 ~r~~~~~~~~lvv~N~~ 575 (631)
.|..+ ++.++||+|..
T Consensus 667 ~R~~~-~d~vlVv~~~~ 682 (683)
T PRK09505 667 VREHG-DDKVMVVWAGQ 682 (683)
T ss_pred EEEeC-CCEEEEEEeCC
Confidence 99887 78999999854
No 25
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=3.6e-53 Score=459.38 Aligned_cols=386 Identities=19% Similarity=0.243 Sum_probs=259.0
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCc
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFF---------SPMSRYAAGGGGPLK 198 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~---------~~d~~yGt~~~~~~~ 198 (631)
.++++|++|||||++||||+|||+||+++ ++ ...+|||++.||| +|||+|||.
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~----------~~--~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~------ 80 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKG----------TS--GGYDVGYGVYDLFDLGEFDQKGTVRTKYGTK------ 80 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccC----------CC--CCCCCCCCeecccccccccccCCcCcCcCCH------
Confidence 46779999999999999999999999998 21 1257999999999 799999998
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccc-----------------------c--CCCCC------CcC
Q 006791 199 ASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS-----------------------F--RGIDN------KVY 247 (631)
Q Consensus 199 ~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~-----------------------~--~~~~~------~~y 247 (631)
+|||+||++||++||+||+|+|+||++..+ .++|+.. | .+.+. ..|
T Consensus 81 --~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (479)
T PRK09441 81 --EELLNAIDALHENGIKVYADVVLNHKAGAD-EKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHW 157 (479)
T ss_pred --HHHHHHHHHHHHCCCEEEEEECcccccCCC-cceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCC
Confidence 999999999999999999999999999632 2344320 0 00000 012
Q ss_pred eeeCCC---------------CCccccC------------CCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccc
Q 006791 248 YMVDGT---------------GQLLNYA------------GCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASV 300 (631)
Q Consensus 248 y~~~~~---------------~~~~~~~------------~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~ 300 (631)
+...+. ....+|. ...||||++||+|+++|++++++|++++||||||+|++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~ 237 (479)
T PRK09441 158 YHFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKH 237 (479)
T ss_pred cCCCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcC
Confidence 221110 0001121 1257999999999999999999999889999999999999
Q ss_pred cccCCCCCCCCChHHHHHHHhccccCCCeEeeccCCCCCc----cccCCCCCccchhhhhhhhHHHHHHHHcCCCCcHHH
Q 006791 301 LCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGL----YLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGI 376 (631)
Q Consensus 301 l~~~~~~~~~~~~~~l~~i~~~~~~~~~~li~E~w~~~~~----~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~ 376 (631)
+..++ ...+.+++++ ...|+++++||.|..... +..+. . ...+.+++.+...++..+.+.. ...
T Consensus 238 v~~~f------~~~~~~~~~~-~~~~~~~~vGE~~~~~~~~~~~y~~~~-~--~~~~~~Df~~~~~l~~~~~~~~--~~~ 305 (479)
T PRK09441 238 IDAWF------IKEWIEHVRE-VAGKDLFIVGEYWSHDVDKLQDYLEQV-E--GKTDLFDVPLHYNFHEASKQGR--DYD 305 (479)
T ss_pred CCHHH------HHHHHHHHHH-hcCCCeEEEEeecCCChHHHHHHHHhc-C--CCceEecHHHHHHHHHHHhcCC--ccc
Confidence 97653 1223334332 223689999999976421 22110 0 0114566777777776665421 112
Q ss_pred HHHHhhCCccccccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHH
Q 006791 377 LATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRS 456 (631)
Q Consensus 377 ~~~~l~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 456 (631)
+...+... . ....+...++|++|||+.|+...... ...
T Consensus 306 l~~~~~~~--~---~~~~~~~~~~FldNHD~~R~~~~~~~-------------------------------------~~~ 343 (479)
T PRK09441 306 MRNIFDGT--L---VEADPFHAVTFVDNHDTQPGQALESP-------------------------------------VEP 343 (479)
T ss_pred hHhhhCcc--h---hhcCcccceeeeccccCCCccccccc-------------------------------------ccc
Confidence 22222111 0 11245578999999999986432110 001
Q ss_pred HHHHHHHHHHHhcC-CceeeecccccccccCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCCCCcCC
Q 006791 457 RQMKNFHLALMVSQ-GTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDF 535 (631)
Q Consensus 457 ~~~~~a~~~l~~~p-GiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~~~~~~~~Li~lR~~~~~l~~g~~ 535 (631)
+.+++|+++|||+| |+||||||+|+|+.+... ..++++++++||+|||+++ .|+.
T Consensus 344 ~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~---------------------~~~l~~~i~~Li~lRk~~~---~G~~ 399 (479)
T PRK09441 344 WFKPLAYALILLREEGYPCVFYGDYYGASGYYI---------------------DMPFKEKLDKLLLARKNFA---YGEQ 399 (479)
T ss_pred cchHHHHHHHHhCCCCceeeEeccccCCCCCcc---------------------cchHHHHHHHHHHHHHHhC---CCCe
Confidence 12468999999999 999999999999865311 1368999999999999853 4554
Q ss_pred CCCCceeeeccccCCCCCcEEEEEEecCCC-CeEEEEEeCCC-CcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCC
Q 006791 536 LNINDVTWHEDNWDNYDSKFLAFTLHDNNG-ADIYLAFNAHD-FFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAG 613 (631)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~vla~~r~~~~~-~~~lvv~N~~~-~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (631)
..+ ..++++++|.|...++ +.++||+|.+. ...+++++....++.|++++...... +.. . ..
T Consensus 400 ~~~-----------~~~~~~~~~~R~~~~~~~~vvvvinn~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~-~-~~ 463 (479)
T PRK09441 400 TDY-----------FDHPNCIGWTRSGDEENPGLAVVISNGDAGEKTMEVGENYAGKTWRDYTGNRQET---VTI-D-ED 463 (479)
T ss_pred eEe-----------ecCCCEEEEEEecCCCCccEEEEEECCCCCcEEEEeCccCCCCEeEhhhCCCCCe---EEE-C-CC
Confidence 322 2457899999987632 46888887764 44457787655566788777543211 100 0 11
Q ss_pred CCCeEEEcCcEEEEE
Q 006791 614 TGSTYNLSPYSSILL 628 (631)
Q Consensus 614 ~~~~~~l~p~s~~vl 628 (631)
....++|||.|+.|+
T Consensus 464 G~~~~~l~~~s~~i~ 478 (479)
T PRK09441 464 GWGTFPVNGGSVSVW 478 (479)
T ss_pred CeEEEEECCceEEEe
Confidence 224789999999997
No 26
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=1.8e-47 Score=409.17 Aligned_cols=497 Identities=18% Similarity=0.210 Sum_probs=314.2
Q ss_pred CCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccCCccchhccccccccccCCCCCCCC
Q 006791 13 TGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGD 92 (631)
Q Consensus 13 ~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 92 (631)
.++.|...+|.++ ||..|+..+..++. . . ..+.+||+.+....... .. ..+++.. .....|.|..
T Consensus 328 ~~~w~~~~~~~i~-H~s~~k~~~~~~~g----~-~----~RiPaw~~~~~~~~~~~-~~--~~~~w~P--~~~~~y~~k~ 392 (872)
T PLN03244 328 RKAWLKKYIPAIP-HGSKYRLYFNTPDG----P-L----ERIPAWATYVLPDDDGK-QA--FAIHWEP--PPEAAHKWKN 392 (872)
T ss_pred cCceeecccCCCC-CCCeEEEEEEcCCC----C-c----ccCCCCeeeEEecCCCC-ce--eeeEeCC--CcccCCccCC
Confidence 3448999999886 89999999987542 2 1 23677887775443210 00 0111110 0124588975
Q ss_pred CCCCCCCCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCC
Q 006791 93 NYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMV 172 (631)
Q Consensus 93 ~~~~p~~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~ 172 (631)
. .|.. ...+.|||.||+-.+.. .. -|+|+.++++
T Consensus 393 ~--~p~~-p~~lrIYE~HvGms~~e--~k-----v~ty~eF~~~------------------------------------ 426 (872)
T PLN03244 393 M--KPKV-PESLRIYECHVGISGSE--PK-----ISSFEEFTEK------------------------------------ 426 (872)
T ss_pred C--CCCC-CCCceEEEEEeeecCCC--CC-----cccHHHHhhc------------------------------------
Confidence 3 3333 36778999999987643 22 3999999985
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCC
Q 006791 173 NTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDG 252 (631)
Q Consensus 173 ~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~ 252 (631)
+++||||+++|||. +|||+||++||++||+||||||+||++.++. ..+..|++.. ..||+.++
T Consensus 427 ------vt~fFApssRYGTP--------eDLK~LVD~aH~~GI~VILDvV~NH~~~d~~--~GL~~fDGt~-~~Yf~~~~ 489 (872)
T PLN03244 427 ------VTNFFAASSRYGTP--------DDFKRLVDEAHGLGLLVFLDIVHSYAAADEM--VGLSLFDGSN-DCYFHTGK 489 (872)
T ss_pred ------cCcccccCcccCCH--------HHHHHHHHHHHHCCCEEEEEecCccCCCccc--cchhhcCCCc-cceeccCC
Confidence 23789999999997 9999999999999999999999999997432 1244566643 25666554
Q ss_pred CCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecc-cccccCCC-------C-------CCCCChHHHH
Q 006791 253 TGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLA-SVLCRGTD-------G-------SPLNAPPLIR 317 (631)
Q Consensus 253 ~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~-~~l~~~~~-------~-------~~~~~~~~l~ 317 (631)
.+. ...+|+ ..+|+.+++|+++|+++++||++||||||||||++ ++++.+.. + ...++..+|+
T Consensus 490 ~g~-~~~WGs-~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~ 567 (872)
T PLN03244 490 RGH-HKHWGT-RMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLI 567 (872)
T ss_pred CCc-cCCCCC-ceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHH
Confidence 443 334455 57999999999999999999999999999999965 56654421 0 1234556777
Q ss_pred HHHh--ccccCCCeEeeccCCCCC-ccccCCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCC
Q 006791 318 AIAK--DAILSRCKIIAEPWDCRG-LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRK 394 (631)
Q Consensus 318 ~i~~--~~~~~~~~li~E~w~~~~-~~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 394 (631)
.++. ....|++++|||....-. +...-......+...||..+.+....+++......-. ...|..+.. .+.+.
T Consensus 568 laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwmdd~lkylk~~pderw~-~~~ItfsL~---~nrr~ 643 (872)
T PLN03244 568 LANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAPDMWLDFLDNIPDHEWS-MSKIVSTLI---ANKEY 643 (872)
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcchHHHHHHHHhCCCcccC-HHHHhhhhh---cccCC
Confidence 7765 456799999999664321 1100000111234899999999999999876543311 112222110 11222
Q ss_pred CCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCce-
Q 006791 395 PYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTP- 473 (631)
Q Consensus 395 ~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~pGiP- 473 (631)
...+++|.+|||+.-..+.. .+....+.. ..++. .....+.+ +.+..||+.++++++||.|
T Consensus 644 ~ek~~aYsESHDqaLvGdKT-------laf~l~d~~-----~y~~~-----~~~~vv~R-g~aLhKMiRllt~~~~G~kk 705 (872)
T PLN03244 644 ADKMLSYAENHNQSISGGRS-------FAEILFGAI-----DEDPL-----GGKELLDR-GCSLHKMIRLITFTIGGHAY 705 (872)
T ss_pred cceEEEEecccceeccccch-------HHhhhcccc-----ccccc-----ccchhhhh-hhHHHHHHHHHHHHccCccc
Confidence 34789999999984221110 000000000 00000 00111111 1224455556788899987
Q ss_pred eeeccccccccc------CCCCCCCCCCCCCCccccccccc-ccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeecc
Q 006791 474 MMLMGDEYGHTR------YGNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHED 546 (631)
Q Consensus 474 ~iy~G~E~g~~~------~g~~n~y~~~~~~~~~~W~~~~~-~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~ 546 (631)
++|||+|||... .||+.++ ...+.+|+.++. ....+.+|+|+|++|++++++|..+.. |+.
T Consensus 706 LnFMGNEFGhpe~~dfPr~gN~~s~----~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~-------wI~- 773 (872)
T PLN03244 706 LNFMGNEFGHPERIEFPMPSNNFSF----SLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLP-------NIH- 773 (872)
T ss_pred eeecccccCCchheeccccCCCccc----cccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCc-------EEe-
Confidence 799999999865 2343332 224679997652 356899999999999999999975432 221
Q ss_pred ccCCCCCcEEEEEEecCCCCeEEEEEeCCCC--cEEEEcCCCCCCCCeEEEEeCCCCCCCC--CCCCC-C----------
Q 006791 547 NWDNYDSKFLAFTLHDNNGADIYLAFNAHDF--FVKVSLPPPPPKRQWFRVVDTNLESPDD--IVPEG-A---------- 611 (631)
Q Consensus 547 ~~~~~~~~vla~~r~~~~~~~~lvv~N~~~~--~~~~~lp~~~~~~~~~~~~~~~~~~~~~--~~~~~-~---------- 611 (631)
+.+.+++||||.|. .++||+|++.. -..+.|.. +..|.|+.++||+...-+. ....+ .
T Consensus 774 -~~d~e~kVIAF~R~-----~LLfVfNF~P~~sy~dYrIGV-p~~G~Y~eILNSD~~~FGG~g~~~~~~~~t~~~~~~~~ 846 (872)
T PLN03244 774 -HVKDAAMVISFMRG-----PFLFIFNFHPSNSYEGYDVGV-EEAGEYQIILNSDETKYGGQGIIEEDHYLQRSINKRID 846 (872)
T ss_pred -eecCCCCEEEEEec-----CEEEEEeCCCCCCccCCEECC-CCCCeEEEEEeCChhhhCCCCccCCCceeecccccccC
Confidence 12567889999993 49999999963 22344432 2257899999998653111 00000 0
Q ss_pred -CCCCCeEEEcCcEEEEEEe
Q 006791 612 -AGTGSTYNLSPYSSILLEA 630 (631)
Q Consensus 612 -~~~~~~~~l~p~s~~vl~~ 630 (631)
......|.|||++++||+.
T Consensus 847 gr~~sl~l~LPprsavVlk~ 866 (872)
T PLN03244 847 GLRNCLEVFLPSRTAQVYKL 866 (872)
T ss_pred CCCceEEEEeCCCEEEEEEE
Confidence 0112358899999999974
No 27
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=4.8e-47 Score=399.07 Aligned_cols=326 Identities=19% Similarity=0.280 Sum_probs=219.8
Q ss_pred CcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCchHHHHHH
Q 006791 127 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM-SRYAAGGGGPLKASWEFKE 205 (631)
Q Consensus 127 ~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d-~~yGt~~~~~~~~~~e~k~ 205 (631)
+|+|++|++|||||++||||+|||+|++++ ..+|||++.|||.++ ++|||+ +|||+
T Consensus 40 gg~~~~i~~kldyL~~LGvtaIWL~P~~~s---------------~s~hGY~~~D~y~ld~~~fGt~--------~elk~ 96 (428)
T PLN00196 40 GGWYNFLMGKVDDIAAAGITHVWLPPPSHS---------------VSEQGYMPGRLYDLDASKYGNE--------AQLKS 96 (428)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCC---------------CCCCCCCccccCCCCcccCCCH--------HHHHH
Confidence 489999999999999999999999999986 256899999999999 599998 99999
Q ss_pred HHHHHHHCCCEEEEEeecccccCCCCC--CCcccccCCCCC---CcCeee----C------CCCCcccc--CCCCCCCCC
Q 006791 206 MVKALHGAGIEVILDVVYNHTNEADDA--NPYTTSFRGIDN---KVYYMV----D------GTGQLLNY--AGCGNTLNC 268 (631)
Q Consensus 206 lV~~~H~~Gi~VilDvV~NH~~~~~~~--~~~~~~~~~~~~---~~yy~~----~------~~~~~~~~--~~~~~~ln~ 268 (631)
||++||++||+||+|+|+||++....+ .+|. .|.+..+ ..|+.. + ..+.+..+ ....||||+
T Consensus 97 Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~ 175 (428)
T PLN00196 97 LIEAFHGKGVQVIADIVINHRTAEHKDGRGIYC-LFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDH 175 (428)
T ss_pred HHHHHHHCCCEEEEEECccCcccccccCCCceE-ECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCC
Confidence 999999999999999999999963211 1121 2222111 222211 0 00111101 123589999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHhccccCCCeEeeccCCCCCccccCCCCC
Q 006791 269 NHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPN 348 (631)
Q Consensus 269 ~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~li~E~w~~~~~~~~~~~~~ 348 (631)
+||+|+++|++++++|++++||||||+|+++++..+ +++...+. ..| .++|||.|........+...
T Consensus 176 ~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~----------f~~~~v~~-~~p-~f~VGE~W~~~~~~~~~~~~- 242 (428)
T PLN00196 176 LNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAE----------VAKVYIDG-TEP-SFAVAEIWTSMAYGGDGKPE- 242 (428)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHH----------HHHHHHHc-cCC-cEEEEEEeccccccccCCcc-
Confidence 999999999999998888899999999999998654 56665432 334 78999999763211111000
Q ss_pred ccchhhhhhhhHHHHHHHHcCCCCc----------HHH-HHHHhhCC-ccccc-------cCCCCCCcceeeeeccCCCc
Q 006791 349 WDRWAEWNGKYRDDLRKFIKGDPGM----------KGI-LATRISGS-SDLYR-------VNKRKPYHSINFIIAHDGFT 409 (631)
Q Consensus 349 ~~~~~~~n~~f~~~i~~~~~~~~~~----------~~~-~~~~l~~~-~~~~~-------~~~~~~~~~~nf~~~HD~~~ 409 (631)
++ ...-++.+.+++...... ... ....+.+. ..+.. .....|..+++||+|||+.|
T Consensus 243 ~~-----~~~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r 317 (428)
T PLN00196 243 YD-----QNAHRQELVNWVDRVGGAASPATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGS 317 (428)
T ss_pred cc-----chhhHHHHHHHHHhcCCccCcceeecccchHHHHHHhcCCchhhhhhcccCcchhhcChhhceeeccCCCCcc
Confidence 00 011223333443311100 000 00011110 00100 01235668999999999987
Q ss_pred hhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCceeeecccccccccCCCC
Q 006791 410 LYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN 489 (631)
Q Consensus 410 l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~pGiP~iy~G~E~g~~~~g~~ 489 (631)
+..+... ...++++|.+++||+||+||||||+
T Consensus 318 ~~~~~~~--------------------------------------~~~~~~lAyA~iLT~pG~P~IyYg~---------- 349 (428)
T PLN00196 318 TQHMWPF--------------------------------------PSDKVMQGYAYILTHPGNPCIFYDH---------- 349 (428)
T ss_pred ccccCCC--------------------------------------ccchHHHHHHHHHcCCCcceEeeCC----------
Confidence 6332210 0224588999999999999999994
Q ss_pred CCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeeccccCCCCCcEEEEEEecCCCCeEE
Q 006791 490 NSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIY 569 (631)
Q Consensus 490 n~y~~~~~~~~~~W~~~~~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~~~~~l 569 (631)
.++| .+.+.+++|+++||+++++..|++... ..+++++++.| ++.++
T Consensus 350 ----------~~~~--------~~~~~i~~Li~~Rk~~~~~~~g~~~~~-----------~a~~d~yv~~~----~~~~~ 396 (428)
T PLN00196 350 ----------FFDW--------GLKEEIAALVSIRNRNGITPTSELRIM-----------EADADLYLAEI----DGKVI 396 (428)
T ss_pred ----------CcCc--------cHHHHHHHHHHHHHhCCCcCCccEEEE-----------EecCCEEEEEE----CCEEE
Confidence 1234 245689999999999999999987544 24567999999 46799
Q ss_pred EEEeCC
Q 006791 570 LAFNAH 575 (631)
Q Consensus 570 vv~N~~ 575 (631)
|.+|..
T Consensus 397 ~~i~~~ 402 (428)
T PLN00196 397 VKIGSR 402 (428)
T ss_pred EEECCC
Confidence 999985
No 28
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.5e-47 Score=396.92 Aligned_cols=278 Identities=30% Similarity=0.467 Sum_probs=194.0
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
|||+||++||||||+||||+||||||+++ + ..+|||++.||++|+|+|||. +|||+||
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~----------~----~~~~gY~~~d~~~vd~~~Gt~--------~d~~~Lv 58 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFES----------P----NGYHGYDPSDYYAVDPRFGTM--------EDFKELV 58 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EES----------S----SSTTTTSESEEEEESTTTBHH--------HHHHHHH
T ss_pred CCHHHHHHhhHHHHHcCCCceeccccccc----------c----cccccccceeeeccccccchh--------hhhhhhh
Confidence 89999999999999999999999999997 2 268999999999999999998 9999999
Q ss_pred HHHHHCCCEEEEEeecccccCCCCCCCccccc-C--CCCCCcCeeeC-----CCCCcc------c-----------cCCC
Q 006791 208 KALHGAGIEVILDVVYNHTNEADDANPYTTSF-R--GIDNKVYYMVD-----GTGQLL------N-----------YAGC 262 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~-~--~~~~~~yy~~~-----~~~~~~------~-----------~~~~ 262 (631)
++||++||+||||+|+||++. .++|+... . +...+.||.+. +++... + +...
T Consensus 59 ~~~h~~gi~VilD~V~NH~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (316)
T PF00128_consen 59 DAAHKRGIKVILDVVPNHTSD---DHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSD 135 (316)
T ss_dssp HHHHHTTCEEEEEEETSEEET---TSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTT
T ss_pred hccccccceEEEeeecccccc---ccccccccccccccccccceeecccccccccccccccccccccccccccccccccc
Confidence 999999999999999999997 67775321 1 11124555542 111111 1 2233
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHhc--cccCCCeEeeccCCCCCc
Q 006791 263 GNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD--AILSRCKIIAEPWDCRGL 340 (631)
Q Consensus 263 ~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~~--~~~~~~~li~E~w~~~~~ 340 (631)
.++||+++|+||++|++++++|+ ++||||||||+++++..+ ++++++.. ...|++++|||.|.....
T Consensus 136 ~~dln~~n~~v~~~i~~~~~~w~-~~giDGfR~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~E~~~~~~~ 204 (316)
T PF00128_consen 136 LPDLNYENPEVREYIIDVLKFWI-EEGIDGFRLDAAKHIPKE----------FWKEFRDEVKEEKPDFFLIGEVWGGDNE 204 (316)
T ss_dssp SEEBETTSHHHHHHHHHHHHHHH-HTTESEEEETTGGGSSHH----------HHHHHHHHHHHHHTTSEEEEEESSSSHH
T ss_pred cchhhhhhhhhhhhhcccccchh-hceEeEEEEccccccchh----------hHHHHhhhhhhhccccceeeeeccCCcc
Confidence 58999999999999999999999 677999999999999764 45554442 223899999999976421
Q ss_pred ----cc-cCCCCCccchhhhhhhhHHHHHH---HHcCCCCcHHHHHHHhhCCccccccCCCCCCcceeeeeccCCCchhh
Q 006791 341 ----YL-VGKFPNWDRWAEWNGKYRDDLRK---FIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYD 412 (631)
Q Consensus 341 ----~~-~~~~~~~~~~~~~n~~f~~~i~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d 412 (631)
+. .+.+. ....++......... ...........+...+......+ ..+...++|++|||+.|+..
T Consensus 205 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~f~~nHD~~r~~~ 277 (316)
T PF00128_consen 205 DLRQYAYDGYFD---LDSVFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSSY----PDPYRAVNFLENHDTPRFAS 277 (316)
T ss_dssp HHHHHHHHGTTS---HSEEEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHS----TTGGGEEEESSHTTSSTHHH
T ss_pred ccchhhhccccc---cchhhcccccccccchhhhhccccchhhhhhhhhhhhhhhh----cccceeeecccccccccchh
Confidence 00 01110 001112222222222 22333333333333333221111 12457899999999998755
Q ss_pred hhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCceeeecccccccccC
Q 006791 413 LVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRY 486 (631)
Q Consensus 413 ~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~pGiP~iy~G~E~g~~~~ 486 (631)
.+.. ...++++|++++||+||+||||||||+|+++.
T Consensus 278 ~~~~--------------------------------------~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~ 313 (316)
T PF00128_consen 278 RFGN--------------------------------------NRDRLKLALAFLLTSPGIPMIYYGDEIGMTGS 313 (316)
T ss_dssp HTTT--------------------------------------HHHHHHHHHHHHHHSSSEEEEETTGGGTBBTS
T ss_pred hhcc--------------------------------------cchHHHHHHHHHHcCCCccEEEeChhccCCCC
Confidence 4421 12268899999999999999999999999874
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=2.4e-45 Score=381.24 Aligned_cols=327 Identities=17% Similarity=0.241 Sum_probs=215.8
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
.-|++|+++||||++||||+|||+|++++ ..+|||+|.|||.++++|||. +|||+||
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~---------------~~~~GY~~~d~y~~~~~~Gt~--------~el~~li 82 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQS---------------LAPEGYLPQNLYSLNSAYGSE--------HLLKSLL 82 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcC---------------CCCCCCCcccccccCcccCCH--------HHHHHHH
Confidence 36899999999999999999999999987 246899999999999999998 9999999
Q ss_pred HHHHHCCCEEEEEeecccccCCCC-CCCcccccCCCCCCcCeee----CCCC--C--ccccCCCCCCCCCCCHHHHHHHH
Q 006791 208 KALHGAGIEVILDVVYNHTNEADD-ANPYTTSFRGIDNKVYYMV----DGTG--Q--LLNYAGCGNTLNCNHPVVMELIL 278 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~~~~~~-~~~~~~~~~~~~~~~yy~~----~~~~--~--~~~~~~~~~~ln~~~~~v~~~i~ 278 (631)
++||++||+||+|+|+||++.... ...++..|.+.. ..|... +..+ . ........||||++||+||++|+
T Consensus 83 ~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~-~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~ 161 (401)
T PLN02361 83 RKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGIP-LPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDII 161 (401)
T ss_pred HHHHHcCCEEEEEEccccccCCCCCCCCCcccCCCCc-CCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHH
Confidence 999999999999999999854211 111222333310 011100 0000 0 00112236999999999999999
Q ss_pred HHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHhccccCCCeEeeccCCCCCccccCCCCCccchhhhhhh
Q 006791 279 DSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNGK 358 (631)
Q Consensus 279 ~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~li~E~w~~~~~~~~~~~~~~~~~~~~n~~ 358 (631)
+++++|++++||||||+|++++++.+ +++++.+. ..| ++++||.|............ .-+.+.
T Consensus 162 ~~~~wl~~~~GiDGfRlDavk~~~~~----------f~~~~~~~-~~p-~f~VGE~w~~~~~~~~d~~~-----~y~~~~ 224 (401)
T PLN02361 162 GWLIWLRNDVGFQDFRFDFAKGYSAK----------FVKEYIEA-AKP-LFSVGEYWDSCNYSGPDYRL-----DYNQDS 224 (401)
T ss_pred HHHHHHHhcCCCCEEEEeccccCCHH----------HHHHHHHh-hCC-eEEEEEEecCCCcCCccccc-----chhhhh
Confidence 99987776799999999999999654 56666553 233 78999999763110000000 111123
Q ss_pred hHHHHHHHHcCCCCcH--------HHHHHHhhCC----cccc----ccCCCCCCcceeeeeccCCCchhhhhhhcccccc
Q 006791 359 YRDDLRKFIKGDPGMK--------GILATRISGS----SDLY----RVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNE 422 (631)
Q Consensus 359 f~~~i~~~~~~~~~~~--------~~~~~~l~~~----~~~~----~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~ 422 (631)
.++.+..|+....+.. ..+...+.+. .+.. ......|..+|+||+|||+.|...+..
T Consensus 225 ~~~~l~~~~~~~~~~~~~fDF~l~~~l~~a~~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~------- 297 (401)
T PLN02361 225 HRQRIVNWIDGTGGLSAAFDFTTKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWP------- 297 (401)
T ss_pred HHHHHHHHHHhcCCcceeecHHHHHHHHHHHhhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccC-------
Confidence 4455555554322111 1111111100 0000 011234568999999999977533210
Q ss_pred ccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCceeeecccccccccCCCCCCCCCCCCCCccc
Q 006791 423 ANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQ 502 (631)
Q Consensus 423 ~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~ 502 (631)
....++++|+|++||.||+||||||+= ++
T Consensus 298 -------------------------------~~~~~~~~AyA~iLT~pG~P~Vyyg~~--------------------~~ 326 (401)
T PLN02361 298 -------------------------------FPSDHIMEGYAYILTHPGIPTVFYDHF--------------------YD 326 (401)
T ss_pred -------------------------------CchHHHHHHHHHHHCCCCcCeEeeccc--------------------cC
Confidence 012456779999999999999999861 23
Q ss_pred ccccccccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeC
Q 006791 503 WGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNA 574 (631)
Q Consensus 503 W~~~~~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~~~~~lvv~N~ 574 (631)
|+. ++.+++++|++|||++++++.++.... ..++++++-.. ++.++|=++.
T Consensus 327 ~~~------~~~~~I~~Li~lRk~~~~~~~s~~~i~-----------~a~~~~y~a~i----~~~~~~k~g~ 377 (401)
T PLN02361 327 WGG------SIHDQIVKLIDIRKRQDIHSRSSIRIL-----------EAQSNLYSAII----DEKLCMKIGD 377 (401)
T ss_pred CCh------HHHHHHHHHHHHHHhCCCCCCCcEEEE-----------EecCCeEEEEE----CCeEEEEecC
Confidence 432 688999999999999999999887543 34556666655 2345555444
No 30
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=8.9e-46 Score=387.87 Aligned_cols=397 Identities=13% Similarity=0.182 Sum_probs=270.7
Q ss_pred EecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 006791 109 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 188 (631)
Q Consensus 109 i~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~ 188 (631)
+.+.+|.++..+++ |++.|++++ ||++ ||++|||+|+|++ + .++||+++||++|||+
T Consensus 3 v~lity~Ds~g~gl-----gdl~g~l~~--yL~~-~v~~i~LlPffps----------~-----sD~GYdv~DY~~VDP~ 59 (470)
T TIGR03852 3 AMLITYADSLGKNL-----KELNKVLEN--YFKD-AVGGVHLLPFFPS----------T-----GDRGFAPMDYTEVDPA 59 (470)
T ss_pred ceEEEecCCCCCCh-----hhHHHHHHH--HHHH-hCCEEEECCCCcC----------C-----CCCCcCchhhceeCcc
Confidence 44667777777666 999999998 9999 7999999999988 3 3579999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCC--CC--CcCee-----eCCC----C-
Q 006791 189 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGI--DN--KVYYM-----VDGT----G- 254 (631)
Q Consensus 189 yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~--~~--~~yy~-----~~~~----~- 254 (631)
|||. +||++|+++ |+||+|+|+||||. +||||+.+... +. .+||. +.+. .
T Consensus 60 ~Gt~--------~Df~~L~~~-----~kvmlDlV~NHtS~---~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d 123 (470)
T TIGR03852 60 FGDW--------SDVEALSEK-----YYLMFDFMINHISR---QSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQED 123 (470)
T ss_pred cCCH--------HHHHHHHHh-----hhHHhhhccccccc---chHHHHHHHhcCCCCCccceEEecccccCCCCccccc
Confidence 9998 999999997 89999999999997 99999876422 22 56676 2110 0
Q ss_pred -----------C--------------ccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCC
Q 006791 255 -----------Q--------------LLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 309 (631)
Q Consensus 255 -----------~--------------~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~ 309 (631)
. +..|+..++|||++||.|+++|.++++||+ +.||||||+||+.++++.. |+.
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~-Gt~ 201 (470)
T TIGR03852 124 VDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKL-GTN 201 (470)
T ss_pred cccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccC-CCC
Confidence 0 011234589999999999999999999999 8999999999999999886 333
Q ss_pred C-----CChHHHHHHHhccccCCCeEeeccCCCCC-ccccCCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhC
Q 006791 310 L-----NAPPLIRAIAKDAILSRCKIIAEPWDCRG-LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISG 383 (631)
Q Consensus 310 ~-----~~~~~l~~i~~~~~~~~~~li~E~w~~~~-~~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~ 383 (631)
+ +...+++.+++-...+++.||+|.+..-. .+..|+ -+.|++.|.-..+-+..-..+....+...+..
T Consensus 202 c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~~~~~~~~~~gd------e~~mvY~F~lppl~l~al~~~~~~~l~~wl~~ 275 (470)
T TIGR03852 202 DFFVEPEIWELLDEVRDILAPTGAEILPEIHEHYTIQFKIAE------HGYYVYDFALPMLVLYSLYSGKTNRLADWLRK 275 (470)
T ss_pred cccCChhHHHHHHHHHHHhccCCCEEEeHhhhhccccccccc------ceeEEccCccchhhHHHhhccCHHHHHHHHHh
Confidence 3 44567777777556779999999874321 111121 16677777766555544334444555555542
Q ss_pred CccccccCCCCCCcceeeeeccCCCchhhh---hhhccccc-----cccCCCC-------CCCCCCCCccCCCCCCCCCc
Q 006791 384 SSDLYRVNKRKPYHSINFIIAHDGFTLYDL---VSYNYKHN-----EANGEGG-------NDGCNDNFSWNCGFEGETDD 448 (631)
Q Consensus 384 ~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~---~~~~~~~~-----~~~g~~~-------~~g~~~~~~~~~~~~g~~~~ 448 (631)
. |....||+.|||+.++.+. ++..+... ...|..- .+|....|.-||...
T Consensus 276 ~----------p~~~~nfL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~----- 340 (470)
T TIGR03852 276 S----------PMKQFTTLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYY----- 340 (470)
T ss_pred C----------cccceEEeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhH-----
Confidence 2 1134699999999998542 22111100 0111111 122222223333211
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeecccccccccCC---CCCCCCCCCCCCcccccccc--c-ccchHHHHHHHHHH
Q 006791 449 ASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYG---NNNSYGHDTAINNFQWGQLE--T-KKNSHYRFFSEVIK 522 (631)
Q Consensus 449 ~~~~~~~~~~~~~a~~~l~~~pGiP~iy~G~E~g~~~~g---~~n~y~~~~~~~~~~W~~~~--~-~~~~~~~~~~~Li~ 522 (631)
++... ..+++.+|.+++|++||||.||||+|+|+...- .+...+++ +|.-.|+..+ . -...+.+-..+||+
T Consensus 341 ~aL~~-~~~r~~~a~ai~~~lpGiP~iYy~~llg~~nD~~~~~rt~~~R~--Inr~~~~~~~i~~~l~~~v~~~L~~li~ 417 (470)
T TIGR03852 341 SALGD-DDQAYLLARAIQFFAPGIPQVYYVGLLAGKNDIELLEETKEGRN--INRHYYTLEEIAEEVKRPVVAKLLNLLR 417 (470)
T ss_pred HHhCC-CHHHHHHHHHHHHcCCCCceEEechhhcCCchHHHHHhcCCCCC--CCCCCCCHHHHHHHHhhHHHHHHHHHHH
Confidence 11111 136788999999999999999999999986421 01112233 4445555433 1 12245666666999
Q ss_pred HHhcCCCCCC-cCCCCCCceeeeccccCCCCCcEEEEEEecCC-CCeEEEEEeCCCCcEEE
Q 006791 523 FRQSRRVFGR-EDFLNINDVTWHEDNWDNYDSKFLAFTLHDNN-GADIYLAFNAHDFFVKV 581 (631)
Q Consensus 523 lR~~~~~l~~-g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~-~~~~lvv~N~~~~~~~~ 581 (631)
+|+++|||+. |++. + ...++.++++.|...+ ++.+++++|+++..+.+
T Consensus 418 ~R~~~~aF~~~g~~~-~----------~~~~~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~ 467 (470)
T TIGR03852 418 FRNTSKAFDLDGSID-I----------ETPSENQIEIVRTNKDGGNKAILTANLKTKTFTI 467 (470)
T ss_pred HHhhCcccCCCCceE-e----------cCCCCcEEEEEEEcCCCCceEEEEEecCCCcEec
Confidence 9999999988 6654 3 1457889999997653 57999999999887544
No 31
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=1.1e-42 Score=366.83 Aligned_cols=403 Identities=15% Similarity=0.195 Sum_probs=264.9
Q ss_pred CceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhch-HHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCC
Q 006791 103 DLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIP-HLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTIN 181 (631)
Q Consensus 103 ~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~Ld-yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d 181 (631)
+.++.=.+.+++.+ |+|+||+++|| ||++| |++|||||+|+.. | ...+||+++|
T Consensus 3 n~~~litY~Ds~~~-----------GdL~gl~~kLd~yL~~l-v~~vhllPff~ps---------p----~sD~GYdv~D 57 (495)
T PRK13840 3 NKVQLITYADRLGD-----------GGLKSLTALLDGRLDGL-FGGVHILPFFYPI---------D----GADAGFDPID 57 (495)
T ss_pred CceEEEEeccCCCC-----------CCHhHHHHHHHHHHHHH-hCeEEECCCccCC---------C----CCCCCCCCcC
Confidence 34555555666532 89999999999 59999 9999999999530 2 1356999999
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccC--CCC--CCcCeeeCCC----
Q 006791 182 FFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFR--GID--NKVYYMVDGT---- 253 (631)
Q Consensus 182 ~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~--~~~--~~~yy~~~~~---- 253 (631)
|++|||+|||. +||++|++ ||+||+|+|+||||. +||||+.+. +.+ ..+||.+.+.
T Consensus 58 Y~~VDP~fGt~--------eDf~~L~~-----giklmlDlV~NHtS~---~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~ 121 (495)
T PRK13840 58 HTKVDPRLGDW--------DDVKALGK-----THDIMADLIVNHMSA---ESPQFQDVLAKGEASEYWPMFLTKDKVFPD 121 (495)
T ss_pred hhhcCcccCCH--------HHHHHHHh-----CCeEEEEECCCcCCC---CcHHHHHHHHhCCCCCccCeEEECCCCCcC
Confidence 99999999998 99999985 999999999999997 999998763 222 2466765210
Q ss_pred ---------------CC-c--------------cccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEeccccccc
Q 006791 254 ---------------GQ-L--------------LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 303 (631)
Q Consensus 254 ---------------~~-~--------------~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~ 303 (631)
+. + ..|+..++|||++||+|+++|++++++|+ +.||||||+||+.++.+
T Consensus 122 ~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K 200 (495)
T PRK13840 122 GATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIK 200 (495)
T ss_pred CCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhc
Confidence 10 0 11334579999999999999999999999 78999999999999888
Q ss_pred CCCCCCC----CChHHHHHHHhccccCCCeEeeccCCCCCcc-ccCCCCCccchhhhhhhhHHHHHHHH-cCCCCcHHHH
Q 006791 304 GTDGSPL----NAPPLIRAIAKDAILSRCKIIAEPWDCRGLY-LVGKFPNWDRWAEWNGKYRDDLRKFI-KGDPGMKGIL 377 (631)
Q Consensus 304 ~~~~~~~----~~~~~l~~i~~~~~~~~~~li~E~w~~~~~~-~~~~~~~~~~~~~~n~~f~~~i~~~~-~~~~~~~~~~ 377 (631)
.. |+.+ +...++++++.-....+..+|+|.|..-+.. ..+. .....+|+.+...+...+ .++.. .+
T Consensus 201 ~~-gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei~~y~~~~~~~~~----e~~~vYnF~Lp~ll~~aL~~~~~~---~L 272 (495)
T PRK13840 201 KA-GTSCFMIPETFEFIDRLAKEARARGMEVLVEIHSYYKTQIEIAK----KVDRVYDFALPPLILHTLFTGDVE---AL 272 (495)
T ss_pred CC-CCCcCCChHHHHHHHHHHHHhhhcCCEEEEeCccccCccccccc----cccEEecchhhHHHHHHHHhCCch---HH
Confidence 74 3333 3445777776532223677899987643211 0011 122556666655555433 44322 22
Q ss_pred HHHhhCCccccccCCCCCCcceeeeeccCCCchhhh----------hhhccccc-------cccCCC---CCCC--CCCC
Q 006791 378 ATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDL----------VSYNYKHN-------EANGEG---GNDG--CNDN 435 (631)
Q Consensus 378 ~~~l~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~----------~~~~~~~~-------~~~g~~---~~~g--~~~~ 435 (631)
...+... |..++||+.|||+.++.|. +...+... ...+.. ..++ .-..
T Consensus 273 ~~~l~~~----------p~~~~n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~ 342 (495)
T PRK13840 273 AHWLEIR----------PRNAVTVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDL 342 (495)
T ss_pred HHHHHhC----------CCccEEeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccc
Confidence 2223221 3355799999999998332 21111100 011110 0111 1123
Q ss_pred CccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCceeeecccccccccCC---CCCCCCCCCCCCcccccccccc-cc
Q 006791 436 FSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYG---NNNSYGHDTAINNFQWGQLETK-KN 511 (631)
Q Consensus 436 ~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~pGiP~iy~G~E~g~~~~g---~~n~y~~~~~~~~~~W~~~~~~-~~ 511 (631)
|.-||+....-... .+++.+|.+++|++||||.||||+|+|..+.- ..-.-++.-.|..++|+..+.. ..
T Consensus 343 Y~in~~~~~Al~~~------d~r~lla~ai~~~~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~ 416 (495)
T PRK13840 343 YQVNCTYYDALGRN------DQDYLAARAIQFFAPGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALER 416 (495)
T ss_pred hhhhccHHHHhcCC------cHHHHHHHHHHHcCCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHH
Confidence 44455543211110 23677889999999999999999999986421 0011245556777888866532 34
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcC
Q 006791 512 SHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLP 584 (631)
Q Consensus 512 ~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~~~~~lvv~N~~~~~~~~~lp 584 (631)
.+++-.++||++|+++|||. |++... ..++..++..|..+ .....+.+|+......+...
T Consensus 417 ~v~~~l~~li~~R~~~~aF~-~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 476 (495)
T PRK13840 417 PVVKALNALIRFRNEHPAFD-GAFSYA-----------ADGDTSLTLSWTAG-DSSASLTLDFAPKKGLITAL 476 (495)
T ss_pred HHHHHHHHHHHHHhcCcccC-ceEEEe-----------cCCCCeEEEEEecC-CceEEEEEEcccceEEEEec
Confidence 68999999999999999995 554321 34567788888766 66777888887766555443
No 32
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-43 Score=387.55 Aligned_cols=399 Identities=24% Similarity=0.337 Sum_probs=258.1
Q ss_pred ceEEEEecCcccCCCCCCCCCCCC-cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCC
Q 006791 104 LVIYEMNVRAFTGDESSGLDPEIR-GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINF 182 (631)
Q Consensus 104 ~iiYei~v~~F~~~~~~~~~~~~~-G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~ 182 (631)
++||++.+++|.+++.++.....+ |||+||+++||||++|||++|||+||+++ + ..++||++.||
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s----------~----~~~~gY~~~Dy 66 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFES----------P----QADHGYDVSDY 66 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCC----------C----ccCCCccccch
Confidence 489999999999988733222223 99999999999999999999999999998 3 36889999999
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCC----CcCeeeCCC-----
Q 006791 183 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDN----KVYYMVDGT----- 253 (631)
Q Consensus 183 ~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~----~~yy~~~~~----- 253 (631)
+.++|.|||. ++|++||++||++||+||||+|+||++. +|+|+........ ..||.|.+.
T Consensus 67 ~~id~~~Gt~--------~d~~~li~~~H~~gi~vi~D~V~NH~s~---~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~ 135 (505)
T COG0366 67 TKVDPHFGTE--------EDFKELVEEAHKRGIKVILDLVFNHTSD---EHPWFKEARSSKPNPKRSDYYIWRDPDPDGT 135 (505)
T ss_pred hhcCcccCCH--------HHHHHHHHHHHHCCCEEEEEeccCcCCC---ccHHHHHHhcCCCCcccCCCceEccCcccCC
Confidence 9999999998 9999999999999999999999999997 8888875443322 266665310
Q ss_pred ----------CC-c----------cccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCC------
Q 006791 254 ----------GQ-L----------LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTD------ 306 (631)
Q Consensus 254 ----------~~-~----------~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~------ 306 (631)
+. + ..+...+++||+.+|+|++.+.+.++||+ ++||||||+|+++++.....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~~~~~~~~~~ 214 (505)
T COG0366 136 PPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISKDFGLPPSEE 214 (505)
T ss_pred CCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhccccCCCCccc
Confidence 00 0 11222368999999999999999999999 59999999999999988542
Q ss_pred --CCCCCChHHHHHHHhccccCCCeEeeccCCCCCcccc-CCCCCccchhhhhhhhHHHHHHH-HcCC----------CC
Q 006791 307 --GSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLV-GKFPNWDRWAEWNGKYRDDLRKF-IKGD----------PG 372 (631)
Q Consensus 307 --~~~~~~~~~l~~i~~~~~~~~~~li~E~w~~~~~~~~-~~~~~~~~~~~~n~~f~~~i~~~-~~~~----------~~ 372 (631)
..+....+.++....+ ++..++.+........ ..+. ...+..+......+ +... ..
T Consensus 215 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (505)
T COG0366 215 NLTFLEEIHEYLREENPD-----VLIYGEAITDVGEAPGAVKED-----FADNTSFTNPELSMLFDFSHVGLDFEALAPL 284 (505)
T ss_pred ccccHHHHHHHHHHHHHH-----HHhcCcceeeeeccccccchh-----hhhccchhhhhHhhccccccccccccccCcc
Confidence 1111111222222222 2222232221110000 0000 00000111111111 1110 01
Q ss_pred cHHHHHHHhhCCccccccCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHH
Q 006791 373 MKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIK 452 (631)
Q Consensus 373 ~~~~~~~~l~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~ 452 (631)
....+...+........ ........|..|||..++....... ..
T Consensus 285 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~hD~~r~~~~~~~~-----------------------------~~---- 328 (505)
T COG0366 285 DAEELKEILADWPLAVN---LNDGWNNLFLSNHDQPRLLSRFGDD-----------------------------VG---- 328 (505)
T ss_pred cHHHHHHHHHHHHhhhc---cccCchhhhhhhcCccceeeeccCC-----------------------------cc----
Confidence 11122111111111100 0111333478899988765443110 00
Q ss_pred HHHHHHHHHHHHHHHhcCCceeeecccccccccCCCCC-------------CCCCCCCCCccccc---------------
Q 006791 453 ALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNN-------------SYGHDTAINNFQWG--------------- 504 (631)
Q Consensus 453 ~~~~~~~~~a~~~l~~~pGiP~iy~G~E~g~~~~g~~n-------------~y~~~~~~~~~~W~--------------- 504 (631)
.....++++.++++++||+|+||||+|+|+......+ ...++.+|.+|.|+
T Consensus 329 -~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~ 407 (505)
T COG0366 329 -GRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWL 407 (505)
T ss_pred -chHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhhhhhhhhccccCCCCCcCCCCCCCCCCccCCCcCc
Confidence 0245677888899999999999999999998765432 12345788999998
Q ss_pred ------------ccc---cccchHHHHHHHHHHHHhcCCC-CCCcCCCCCCceeeeccccCCCCCcEEEEEEecCCCCeE
Q 006791 505 ------------QLE---TKKNSHYRFFSEVIKFRQSRRV-FGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADI 568 (631)
Q Consensus 505 ------------~~~---~~~~~~~~~~~~Li~lR~~~~~-l~~g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~~~~~ 568 (631)
... ....+++.++++|+++|+.+.+ +..|..... . ......+++|.|... ++.+
T Consensus 408 ~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~----~-----~~~~~~~~~~~~~~~-~~~~ 477 (505)
T COG0366 408 SVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVL----L-----ADDDPSLLAFLRESG-GETL 477 (505)
T ss_pred ccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCccccee----c-----CCCCceEEEEecccC-CceE
Confidence 111 1134789999999999999844 444523211 0 134457999999877 6789
Q ss_pred EEEEeCCCCcEEEEcCC
Q 006791 569 YLAFNAHDFFVKVSLPP 585 (631)
Q Consensus 569 lvv~N~~~~~~~~~lp~ 585 (631)
+|++|++.....+.+|.
T Consensus 478 ~~~~n~~~~~~~~~~p~ 494 (505)
T COG0366 478 LVVNNLSEEEQEVELPG 494 (505)
T ss_pred EEEEcCCCccccccCCc
Confidence 99999998766667764
No 33
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-42 Score=375.02 Aligned_cols=448 Identities=21% Similarity=0.290 Sum_probs=283.1
Q ss_pred CCCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCC
Q 006791 99 IPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYS 178 (631)
Q Consensus 99 ~~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~ 178 (631)
.+|+..++|||.+++|..++.+++ |+++||++||||||+||||+|||+||+++ + ..++||+
T Consensus 13 ~~W~~~~~YQI~~~sF~~s~~d~~-----G~~~GI~~kldyi~~lG~taiWisP~~~s----------~----~~~~GY~ 73 (545)
T KOG0471|consen 13 DWWKTESIYQIYPDSFADSDGDGV-----GDLKGITSKLDYIKELGFTAIWLSPFTKS----------S----KPDFGYD 73 (545)
T ss_pred hhhhcCceeEEeccccccccCCCc-----cccccchhhhhHHHhcCCceEEeCCCcCC----------C----HHHhccC
Confidence 468999999999999999998888 99999999999999999999999999998 3 2478999
Q ss_pred CCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCC--CCcCeeeCCCCCc
Q 006791 179 TINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGID--NKVYYMVDGTGQL 256 (631)
Q Consensus 179 ~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~--~~~yy~~~~~~~~ 256 (631)
+.||+.++|+|||. ++|++||+++|++||++|+|+|+||++. .|+||..-...+ ...||.+++....
T Consensus 74 ~~d~~~l~p~fGt~--------edf~~Li~~~h~~gi~ii~D~viNh~~~---~~~wf~~~~~~~~~y~d~~~~~~~~~~ 142 (545)
T KOG0471|consen 74 ASDLEQLRPRFGTE--------EDFKELILAMHKLGIKIIADLVINHRSD---EVEWFKASPTSKTGYEDWYPWHDGSSL 142 (545)
T ss_pred ccchhhhcccccHH--------HHHHHHHHHHhhcceEEEEeeccccCCc---cccccccCccccccceeeeeccCcccc
Confidence 99999999999998 9999999999999999999999999996 788875322111 1235555432211
Q ss_pred --------cc-----------------------cCCCCCCCCCCCHHHHHHHHHHHH-HHHHHcCccEEEEecccccccC
Q 006791 257 --------LN-----------------------YAGCGNTLNCNHPVVMELILDSLR-HWVVEYHVDGFRFDLASVLCRG 304 (631)
Q Consensus 257 --------~~-----------------------~~~~~~~ln~~~~~v~~~i~~~~~-~W~~e~giDGfR~D~~~~l~~~ 304 (631)
.+ +..-+++||+++|+|++.|.++++ +|+ ++||||||+|+++++...
T Consensus 143 ~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~ 221 (545)
T KOG0471|consen 143 DVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGE 221 (545)
T ss_pred cccCCCCccchHhhhccccCcccccccceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEcccccccc
Confidence 11 111268999999999999999999 888 899999999999998765
Q ss_pred CCCCCCCChHHHHHHHhccccCCCeEeeccCCCCCccccCCCCCccchhhhhhhhHHHHHHHHcCCC-----CcHHHHHH
Q 006791 305 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDP-----GMKGILAT 379 (631)
Q Consensus 305 ~~~~~~~~~~~l~~i~~~~~~~~~~li~E~w~~~~~~~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~-----~~~~~~~~ 379 (631)
. ...... ...+.-.||.|.....+... .........-+..+....+..+.... ........
T Consensus 222 ~----------~~~~~~---~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 287 (545)
T KOG0471|consen 222 N----------FKNMWP---DEPVFDVGEKLQDDNYVAYQ-YNDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQT 287 (545)
T ss_pred c----------cccccc---CCCcccceeEecCcchhhcc-cccccccchhhhhHHHHHHhhhhhhhhcccccchhhhhh
Confidence 3 111111 11345567766554221110 00000001111112222222211110 00000000
Q ss_pred HhhCCccccccCCCCCCcceeeeeccCCCchhhh------hh---hc----cccccccCCCCCCCCCCCCccCCCCCCCC
Q 006791 380 RISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDL------VS---YN----YKHNEANGEGGNDGCNDNFSWNCGFEGET 446 (631)
Q Consensus 380 ~l~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~------~~---~~----~~~~~~~g~~~~~g~~~~~~~~~~~~g~~ 446 (631)
.... ......+|.+||+..+..+. ++ .. .+..+.....+.+..+ .|..++.+..
T Consensus 288 ~~~~----------~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~W~~~~~ 354 (545)
T KOG0471|consen 288 EAYS----------SLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVASIYKEVEVDWLSNHDTEN---RWAHWVLGNH 354 (545)
T ss_pred hhhc----------cHHHHHhhhccCCCCccccccchhhhhhhhhccchHHHHHHHHHHHhcCCccC---CceeeeecCc
Confidence 0000 01134455555553321110 00 00 0000000001111111 1222333333
Q ss_pred -CcHHHHHHHHHHHHHHHHHHHhcCCceeeecccccccccC---CCCCCCCCC-CCCCcccccccc--------------
Q 006791 447 -DDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRY---GNNNSYGHD-TAINNFQWGQLE-------------- 507 (631)
Q Consensus 447 -~~~~~~~~~~~~~~~a~~~l~~~pGiP~iy~G~E~g~~~~---g~~n~y~~~-~~~~~~~W~~~~-------------- 507 (631)
..+...+++....++..++++++||+|++|+|+|+|+... ......... ..+++|+|+...
T Consensus 355 ~~~r~~sr~~~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt~~~w~~~~~~gfs~~~~~~~~~ 434 (545)
T KOG0471|consen 355 DQARLASRFGSDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRTPMQWDESTNAGFSEASKTWLPV 434 (545)
T ss_pred cchhhHHHhcchhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHhccCCccccccccccCCCCccCcceec
Confidence 3344556666667888899999999999999999999876 221111100 127888887762
Q ss_pred -------------cccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeC
Q 006791 508 -------------TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNA 574 (631)
Q Consensus 508 -------------~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~~~~~lvv~N~ 574 (631)
..+.+++..++++..+|++...+..|..... ..+..+++|.|...+...+++++|+
T Consensus 435 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~-----------~~~~~if~~~r~~~~~~~~~~~~~~ 503 (545)
T KOG0471|consen 435 NADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLF-----------AATPGLFSFSRNWDGNERFIAVLNF 503 (545)
T ss_pred cccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeee-----------cCCCceEEEEeccCCCceEEEEEec
Confidence 2346899999999999999875666554322 4578899999988866788889999
Q ss_pred CCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCcEEEEEE
Q 006791 575 HDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 629 (631)
Q Consensus 575 ~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~vl~ 629 (631)
++.+....+-... +...+.+.. .......+.|.|++++||+
T Consensus 504 ~~~~~~~~~~~~~----~~~~~~~~~----------~~~~~~~~~l~p~e~~vl~ 544 (545)
T KOG0471|consen 504 GDSPLSLNLTDLD----SVSLLSSNY----------SDVDLSRLKLEPHEGLVLR 544 (545)
T ss_pred CCccccccccccc----ceeeeeccc----------cccccceeeecCCceEEEe
Confidence 8877666554432 111111111 1223467999999999997
No 34
>PLN02784 alpha-amylase
Probab=100.00 E-value=6.6e-40 Score=356.64 Aligned_cols=302 Identities=22% Similarity=0.317 Sum_probs=205.3
Q ss_pred CCCceEEEEecCccc-CCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCC
Q 006791 101 EKDLVIYEMNVRAFT-GDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST 179 (631)
Q Consensus 101 ~~~~iiYei~v~~F~-~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~ 179 (631)
......|++++..|. ++..++ .=|++|+++||||++||||+|||+|++++ ..+|||+|
T Consensus 496 ~~~~~~~eVmlQgF~Wds~~dg------~w~~~I~ekldyL~~LG~taIWLpP~~~s---------------~s~~GY~p 554 (894)
T PLN02784 496 SGTGSGFEILCQGFNWESHKSG------RWYMELGEKAAELSSLGFTVVWLPPPTES---------------VSPEGYMP 554 (894)
T ss_pred ccccCCceEEEEeEEcCcCCCC------chHHHHHHHHHHHHHhCCCEEEeCCCCCC---------------CCCCCcCc
Confidence 345678999999997 333321 33899999999999999999999999987 24689999
Q ss_pred CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCC--CCCcccccCCCCCCcCeeeCC-----
Q 006791 180 INFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADD--ANPYTTSFRGIDNKVYYMVDG----- 252 (631)
Q Consensus 180 ~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~--~~~~~~~~~~~~~~~yy~~~~----- 252 (631)
.|||.++++|||. +|||+||++||++||+||+|+|+||++.... ...| ..|.+ ++.+++
T Consensus 555 ~D~y~lds~yGT~--------~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~-~~f~g-----~~dW~d~~i~~ 620 (894)
T PLN02784 555 KDLYNLNSRYGTI--------DELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVW-NIFGG-----RLNWDDRAVVA 620 (894)
T ss_pred ccccccCcCcCCH--------HHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcc-cccCC-----eecCCCCcccC
Confidence 9999999999998 9999999999999999999999999975311 1111 11111 111110
Q ss_pred -------CCCc--cccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHhcc
Q 006791 253 -------TGQL--LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDA 323 (631)
Q Consensus 253 -------~~~~--~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~~~ 323 (631)
.+.. .......||||+++|.||++|.+++++|++++||||||||++++++.. ++++..+.
T Consensus 621 ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~----------Fvkeyv~a- 689 (894)
T PLN02784 621 DDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGG----------YVKDYMEA- 689 (894)
T ss_pred CCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCHH----------HHHHHHhc-
Confidence 0000 001123589999999999999999999998999999999999887443 56665543
Q ss_pred ccCCCeEeeccCCCCCccccCCCCCccchhhhhhh---hHHHHHHHHcCCCCcHHHH--------HHHhhCCccccc---
Q 006791 324 ILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNGK---YRDDLRKFIKGDPGMKGIL--------ATRISGSSDLYR--- 389 (631)
Q Consensus 324 ~~~~~~li~E~w~~~~~~~~~~~~~~~~~~~~n~~---f~~~i~~~~~~~~~~~~~~--------~~~l~~~~~~~~--- 389 (631)
.. ..++|||.|+... +.. +.+++. .++.+.+|+....+....| ...+.+ ...+.
T Consensus 690 ~k-p~F~VGEyWd~~~-~~~---------g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~-~e~wrL~d 757 (894)
T PLN02784 690 SE-PYFAVGEYWDSLS-YTY---------GEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALER-CEYWRLSD 757 (894)
T ss_pred cC-CcEEEEEeccccc-ccc---------CccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHhc-cchhhhhh
Confidence 23 3799999998632 111 122222 2667778876543322222 222211 01111
Q ss_pred -------cCCCCCCcceeeeeccCCCchhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHH
Q 006791 390 -------VNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNF 462 (631)
Q Consensus 390 -------~~~~~~~~~~nf~~~HD~~~l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a 462 (631)
.....|..+|+||+|||+.+... +|... ..+..+|
T Consensus 758 ~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~------------------------~w~~p--------------~~k~~~A 799 (894)
T PLN02784 758 QKGKPPGVVGWWPSRAVTFIENHDTGSTQG------------------------HWRFP--------------EGKEMQG 799 (894)
T ss_pred ccCCCCCeeccccCceEEEecCCCCCCCcc------------------------cCCCC--------------ccchhhH
Confidence 11235778999999999864311 11100 1124468
Q ss_pred HHHHHhcCCceeeecccccccccCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcC
Q 006791 463 HLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSR 527 (631)
Q Consensus 463 ~~~l~~~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~~~~~~~~Li~lR~~~ 527 (631)
+|++||.||+||||||+=++. +.+-+++||.+||+.
T Consensus 800 YAyILthpG~PcVFy~h~y~~-----------------------------~~~~I~~Li~iRk~~ 835 (894)
T PLN02784 800 YAYILTHPGTPAVFYDHIFSH-----------------------------YHPEIASLISLRNRQ 835 (894)
T ss_pred HHHHHcCCCcceEEehhhhhh-----------------------------hHHHHHHHHHHHHHc
Confidence 899999999999999875431 122399999999985
No 35
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=8e-38 Score=329.79 Aligned_cols=472 Identities=17% Similarity=0.140 Sum_probs=287.6
Q ss_pred CCceEEEEecCcccCCCCCCCCCCCCcCHHHHHh---hchHHHHcCCceEEECCCcccchhh-hhhcCCCCCCCCCCCCC
Q 006791 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQ---KIPHLLELGINAVELLPVFEFDEME-FQRRRNPRDHMVNTWGY 177 (631)
Q Consensus 102 ~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~---~LdyLk~LGvt~I~L~Pi~~~~~~~-~~~~~~~~~~~~~~~GY 177 (631)
.-.+.+.+++.++....+ ..+.+... ..+||++|||++|||+|+++++... +... | ....||
T Consensus 50 ~a~~W~~~~P~s~i~~~~--------~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~t--P----~~D~gy 115 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPEG--------CSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFT--P----SIDGNF 115 (688)
T ss_pred hcCeeEEecchhhcCCCC--------CcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCC--C----CCCCCC
Confidence 445788889998864332 44444432 3699999999999999999983211 1111 1 234599
Q ss_pred CCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCC-CCCCcCe--------
Q 006791 178 STINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRG-IDNKVYY-------- 248 (631)
Q Consensus 178 ~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~-~~~~~yy-------- 248 (631)
+++| +.|+|.|||. +||++|+++||++||+||+|+|+|||+. .|++...-.+ ...+.||
T Consensus 116 Di~d-~~Idp~~GT~--------eDf~~L~~~Ah~~G~~vi~DlVpnHTs~---ghdF~lAr~~~~~Y~g~Y~mvei~~~ 183 (688)
T TIGR02455 116 DRIS-FDIDPLLGSE--------EELIQLSRMAAAHNAITIDDIIPAHTGK---GADFRLAELAHGDYPGLYHMVEIREE 183 (688)
T ss_pred Cccc-CccCcccCCH--------HHHHHHHHHHHHCCCEEEEEeCCCCCCC---CcchHHHhhcCCCCCCceeecccccc
Confidence 9999 5999999998 9999999999999999999999999997 6773322111 1225667
Q ss_pred ---eeC--CCC----------------------C------------ccccC----------------------CCCCCCC
Q 006791 249 ---MVD--GTG----------------------Q------------LLNYA----------------------GCGNTLN 267 (631)
Q Consensus 249 ---~~~--~~~----------------------~------------~~~~~----------------------~~~~~ln 267 (631)
.+. +.+ . ..+|+ ..+|+||
T Consensus 184 ~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLN 263 (688)
T TIGR02455 184 DWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLN 263 (688)
T ss_pred ccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccC
Confidence 331 111 0 01111 1279999
Q ss_pred CCCHH--HHHHHH-HHHHHHHHHcCccEEEEecccccccCCCC---CCCCChHHHHHHHh--c--cccCCCeEeeccCCC
Q 006791 268 CNHPV--VMELIL-DSLRHWVVEYHVDGFRFDLASVLCRGTDG---SPLNAPPLIRAIAK--D--AILSRCKIIAEPWDC 337 (631)
Q Consensus 268 ~~~~~--v~~~i~-~~~~~W~~e~giDGfR~D~~~~l~~~~~~---~~~~~~~~l~~i~~--~--~~~~~~~li~E~w~~ 337 (631)
+.||. ||+.|+ +++++|+ +.|+||||+||+.++..+... .+.+..++++++++ + ...++.++++|.-..
T Consensus 264 w~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~ 342 (688)
T TIGR02455 264 WLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNLT 342 (688)
T ss_pred ccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccCC
Confidence 99999 999999 8999999 899999999999999876432 23456677777665 2 445788888884211
Q ss_pred C---CccccCCCCCccchhhhhhhhHHHHHH-HHcCCCCcHHHHHHHhhCCccccccCCCCCCcceeeeeccCCCchhhh
Q 006791 338 R---GLYLVGKFPNWDRWAEWNGKYRDDLRK-FIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDL 413 (631)
Q Consensus 338 ~---~~~~~~~~~~~~~~~~~n~~f~~~i~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~ 413 (631)
. ..++.++. ...+++.-+..+.. ..+|+... +...|..... ..-...+.++|+.|||+.++.-+
T Consensus 343 ~~d~~~~~g~~~-----dl~~dF~t~p~~~~AL~tgda~p---Lr~~L~~~~~----~gid~~~~~~~LrNHDELtlelv 410 (688)
T TIGR02455 343 IDDIAAMSHGGA-----DLSYDFITRPAYHHALLTGDTEF---LRLMLKEMHA----FGIDPASLIHALQNHDELTLELV 410 (688)
T ss_pred HHHHHHHhCCCc-----ceeecccccHHHHHHHHcCCHHH---HHHHHHhhhc----CCCCchhhhhhccCccccchhhh
Confidence 1 01111111 12222222222222 23333222 2222222211 11144588999999999888532
Q ss_pred hhhcc---------ccccccCCC-----------CCCCCCC--CCc-cCCCC-----------CCCCCcHHHHHHHHHHH
Q 006791 414 VSYNY---------KHNEANGEG-----------GNDGCND--NFS-WNCGF-----------EGETDDASIKALRSRQM 459 (631)
Q Consensus 414 ~~~~~---------~~~~~~g~~-----------~~~g~~~--~~~-~~~~~-----------~g~~~~~~~~~~~~~~~ 459 (631)
..-. +.....|.. .-.+... |.. +..|+ .|-.+-..+.....+++
T Consensus 411 -h~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I 489 (688)
T TIGR02455 411 -HFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELI 489 (688)
T ss_pred -hhcccccccccccccccCCccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHH
Confidence 1100 000000000 0011110 111 20000 11111111122246778
Q ss_pred HHHHHHHHh----cCCceeeecc--------------cccccccCCC--CCCCCCCC------------CCCcccccccc
Q 006791 460 KNFHLALMV----SQGTPMMLMG--------------DEYGHTRYGN--NNSYGHDT------------AINNFQWGQLE 507 (631)
Q Consensus 460 ~~a~~~l~~----~pGiP~iy~G--------------~E~g~~~~g~--~n~y~~~~------------~~~~~~W~~~~ 507 (631)
+++.++|++ +||+|+|||| +|+|+...-- +..|..-+ .+.+.-+...+
T Consensus 490 ~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~ 569 (688)
T TIGR02455 490 KKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTRWIHRGGYDLADLAPEAEASAEGLPKARALYGSLA 569 (688)
T ss_pred HHHHHHHHHhhccCCCceEeecccccccccccccchhhhhccCccccccCCCcccCCCCchhhhccCCCCCCcCCCCCHH
Confidence 899999999 9999999999 9999864211 11111100 01111222222
Q ss_pred ---cccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeeccccCCCCCcEEEEEEecCC-CCeEEEEEeCCCCcEEE--
Q 006791 508 ---TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNN-GADIYLAFNAHDFFVKV-- 581 (631)
Q Consensus 508 ---~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~-~~~~lvv~N~~~~~~~~-- 581 (631)
..+.|++.++++|+++||+++++..+.+... ...+..|+++.+...+ ++.+++|.||+..++.+
T Consensus 570 ~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~----------~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l 639 (688)
T TIGR02455 570 EQLDEPDSFACKLKKILAVRQAYDIAASKQILIP----------DVQAPGLLVMVHELPAGKGIQITALNFGADAIAEEI 639 (688)
T ss_pred HHhhCCccHHHHHHHHHHHHHhCCcccCceeeec----------CCCCCcEEEEEEEcCCCCceEEEeeccCCCCeeeEE
Confidence 3457999999999999999999999887654 3567899999997542 47899999999866554
Q ss_pred EcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCcEEEEEEe
Q 006791 582 SLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEA 630 (631)
Q Consensus 582 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~vl~~ 630 (631)
.++... ++...++++....... .....-.|+|+||+..+|+.
T Consensus 640 ~l~~~~-~~~~~dl~~~~~~~~~------~~~~~~~i~L~~y~~~wl~~ 681 (688)
T TIGR02455 640 CLPGFA-PGPVVDIIHESVEGDL------TDDCELMINLDPYEALALRI 681 (688)
T ss_pred eccccC-CCCceeccCCCccCCc------CCCceeEEEecCcceEEEEe
Confidence 455443 3467777765432110 01123478999999998875
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=5e-34 Score=314.54 Aligned_cols=177 Identities=21% Similarity=0.305 Sum_probs=132.7
Q ss_pred CcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 006791 127 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEM 206 (631)
Q Consensus 127 ~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~l 206 (631)
++||.+++++||||++||||+|||+||+++. + ..+|||++.||++|+|.||+. ++|++|
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~---------~----gs~hGYdv~D~~~idp~lGt~--------edf~~L 70 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAV---------P----GSTHGYDVVDHSEINPELGGE--------EGLRRL 70 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCC---------C----CCCCCCCCCCCCCcCCCCCCH--------HHHHHH
Confidence 3999999999999999999999999999871 1 257899999999999999998 999999
Q ss_pred HHHHHHCCCEEEEEeecccccCCCCCCCccccc--CCCCC--CcCeee--CC----------------------------
Q 006791 207 VKALHGAGIEVILDVVYNHTNEADDANPYTTSF--RGIDN--KVYYMV--DG---------------------------- 252 (631)
Q Consensus 207 V~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~--~~~~~--~~yy~~--~~---------------------------- 252 (631)
|++||++||+||||+|+||++..+..|+|+... .|... ..||.. ++
T Consensus 71 v~aah~~Gm~vIlDiVpNH~a~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~ 150 (825)
T TIGR02401 71 SEAARARGLGLIVDIVPNHMAVHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLR 150 (825)
T ss_pred HHHHHHCCCEEEEEecccccccccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeee
Confidence 999999999999999999999864456776421 01111 122211 10
Q ss_pred -------------------CC-------------Cc-----------------------cccC---C--CCCCCCCCCHH
Q 006791 253 -------------------TG-------------QL-----------------------LNYA---G--CGNTLNCNHPV 272 (631)
Q Consensus 253 -------------------~~-------------~~-----------------------~~~~---~--~~~~ln~~~~~ 272 (631)
.+ .. .||- . .-+.|+.++|+
T Consensus 151 ~d~~~~~~l~y~~~~~Pi~p~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~ 230 (825)
T TIGR02401 151 FDGDGTLALRYYDHRLPLAPGTLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPA 230 (825)
T ss_pred ecCCCceeEEecCccCCcCccchhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHH
Confidence 00 00 0000 0 02567889999
Q ss_pred HHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHhccccCCCeEeec
Q 006791 273 VMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAE 333 (631)
Q Consensus 273 v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~li~E 333 (631)
|.+.....+..|+++.-|||+|+|.+.++... ..+++.+++. ..++.+++.|
T Consensus 231 Vf~~~h~~i~~lv~~g~vdGlRIDh~dGL~dP--------~~Yl~rLr~~-~~~~~yivvE 282 (825)
T TIGR02401 231 VFDATHRLVLELVAEGLVDGLRIDHIDGLADP--------EGYLRRLREL-VGPARYLVVE 282 (825)
T ss_pred HHHHHHHHHHHHHHcCCCceEEeccccccCCh--------HHHHHHHHHh-cCCCceEEEE
Confidence 99999999999998777999999999998432 2367777543 3445777777
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.97 E-value=2.6e-29 Score=278.41 Aligned_cols=88 Identities=23% Similarity=0.406 Sum_probs=80.1
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
++|.+++++|+||++||||+|||+||+++. + ..+|||++.||+.|+|.||+. ++|++||
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~a~---------~----gs~hGYdv~D~~~idp~lGt~--------e~f~~Lv 75 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILAAR---------P----GSTHGYDVVDHTRINPELGGE--------EGLRRLA 75 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCccCC---------C----CCCCCCCcCCCCCcCCCCCCH--------HHHHHHH
Confidence 899999999999999999999999999871 1 257999999999999999998 9999999
Q ss_pred HHHHHCCCEEEEEeecccccCCCCCCCcc
Q 006791 208 KALHGAGIEVILDVVYNHTNEADDANPYT 236 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~~~~~~~~~~~ 236 (631)
++||++||+||||+|+||++..+.+|+|+
T Consensus 76 ~aah~~Gi~VIlDiV~NH~~~~~~~n~ww 104 (879)
T PRK14511 76 AALRAHGMGLILDIVPNHMAVGGPDNPWW 104 (879)
T ss_pred HHHHHCCCEEEEEeccccccCcCccCHHH
Confidence 99999999999999999999865455665
No 38
>smart00642 Aamy Alpha-amylase domain.
Probab=99.92 E-value=2.3e-25 Score=205.59 Aligned_cols=97 Identities=35% Similarity=0.566 Sum_probs=88.4
Q ss_pred EEecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCC
Q 006791 108 EMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 187 (631)
Q Consensus 108 ei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~ 187 (631)
||.+++|.+++.++. |||++++++|+||++||||+|||+|++++... ...+|||++.||++++|
T Consensus 1 qi~~~~F~~~~~~~~-----G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~-----------~~~~~gY~~~d~~~i~~ 64 (166)
T smart00642 1 QIYPDRFADGNGDGG-----GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQG-----------YPSYHGYDISDYKQIDP 64 (166)
T ss_pred CeeeccccCCCCCCC-----cCHHHHHHHHHHHHHCCCCEEEECcceeCCCC-----------CCCCCCcCccccCCCCc
Confidence 578999999888775 99999999999999999999999999998211 12678999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccC
Q 006791 188 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 228 (631)
Q Consensus 188 ~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~ 228 (631)
+|||. +||++||++||++||+||+|+|+||++.
T Consensus 65 ~~Gt~--------~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 65 RFGTM--------EDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred ccCCH--------HHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 99998 9999999999999999999999999883
No 39
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=8.1e-22 Score=190.25 Aligned_cols=385 Identities=20% Similarity=0.276 Sum_probs=229.5
Q ss_pred CHHHHHhhc-hHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 006791 129 SYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTW-GYSTINFFSPMSRYAAGGGGPLKASWEFKEM 206 (631)
Q Consensus 129 ~~~gl~~~L-dyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~-GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~l 206 (631)
++..|+..- ..|.--|+..|+..|+.|..-.. + | ....| .|+|+. |.++.+-|.+ +||+.|
T Consensus 38 KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~----~-~---~rPWWeRYQPvS-YKL~tRSGNE--------~eF~dM 100 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGGVQVSPPNENVAIH----N-P---FRPWWERYQPVS-YKLCTRSGNE--------DEFRDM 100 (504)
T ss_pred ehHHHHHHHHhhcCcCCcceeeecCcchhhhhc----C-C---CCCceeecccce-EEeeccCCCH--------HHHHHH
Confidence 466666654 46777899999999999973211 0 1 12334 799999 5889999998 999999
Q ss_pred HHHHHHCCCEEEEEeecccccCC-----------CCCCCcccccCCCCCCcCeeeC--C------CCCccccC------C
Q 006791 207 VKALHGAGIEVILDVVYNHTNEA-----------DDANPYTTSFRGIDNKVYYMVD--G------TGQLLNYA------G 261 (631)
Q Consensus 207 V~~~H~~Gi~VilDvV~NH~~~~-----------~~~~~~~~~~~~~~~~~yy~~~--~------~~~~~~~~------~ 261 (631)
|+.|.+-|+|+++|+|+||++.. +...|-..+|+|. .|-.++ + .....++. .
T Consensus 101 V~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGV---PYs~~DFn~~kc~~~~~~i~~~Nda~~V~~ 177 (504)
T KOG2212|consen 101 VTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGV---PYSGWDFNDGKCKTGSGDIENYNDATQVRD 177 (504)
T ss_pred HHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCC---CcccccCCCcccCCCccccccccchhhhhc
Confidence 99999999999999999999841 1123333455543 121111 1 11111211 1
Q ss_pred C----CCCCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHhc--cccCCCeEeeccC
Q 006791 262 C----GNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD--AILSRCKIIAEPW 335 (631)
Q Consensus 262 ~----~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~~--~~~~~~~li~E~w 335 (631)
| --|||..+.-||..|++.|.+.+ +.||-|||.||++||+... ......-++.++.| +.....+++-|..
T Consensus 178 C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~D---i~~I~~~l~nLnsD~f~s~srpfi~qEVI 253 (504)
T KOG2212|consen 178 CRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGD---IKAILDKLHNLNSDWFPSGSKPFIYQEVI 253 (504)
T ss_pred ceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHH---HHHHHHHHhhcccccccCCCCceehhhhh
Confidence 1 25889999999999999999999 8999999999999996541 00111123333333 2234566777776
Q ss_pred CCCCcc-ccCCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCcceeeeeccCCCchhhhh
Q 006791 336 DCRGLY-LVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLV 414 (631)
Q Consensus 336 ~~~~~~-~~~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~nf~~~HD~~~l~d~~ 414 (631)
+.++.. ..++..... +.=++.|...+-..+++.... .. ...+ ..-|. +....++++|++|||+.|-..-
T Consensus 254 D~GgE~v~~~dY~g~G--~~TeF~f~~~ig~~~r~~~~~-ky-L~nw---G~~wG--f~~s~~~L~FvDNHDNQR~~ga- 323 (504)
T KOG2212|consen 254 DLGGEPIKSSDYFGNG--RVTEFKFGAKLGTVIRKWNKM-KY-LKNW---GEGWG--FMPSDRALVFVDNHDNQRGHGA- 323 (504)
T ss_pred hcCCceeecccccCCc--eeeeeechHHHHHHHhcchhH-HH-HHhc---CCccC--cCCCcceEEEeccCcccccCCC-
Confidence 665321 111111111 222345677777777665322 11 1111 11121 1123389999999999753210
Q ss_pred hhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcC-CceeeecccccccccCCCCC---
Q 006791 415 SYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQ-GTPMMLMGDEYGHTRYGNNN--- 490 (631)
Q Consensus 415 ~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~p-GiP~iy~G~E~g~~~~g~~n--- 490 (631)
.| . .-+. -...++.+||.++||..| |+|-+..---|-.+.....+
T Consensus 324 ---------gg------a-~Vlt---------------YK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~~ 372 (504)
T KOG2212|consen 324 ---------GG------A-SVLT---------------YKDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNNN 372 (504)
T ss_pred ---------Cc------c-eEEE---------------ecchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCCCC
Confidence 00 0 0000 012468899999999999 99988764444333322111
Q ss_pred ------CCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeeccccCCCCCcEEEEEEecCC
Q 006791 491 ------SYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNN 564 (631)
Q Consensus 491 ------~y~~~~~~~~~~W~~~~~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~ 564 (631)
.++.|. .+.--|-. +.-..-++.|.++|..- +...+. +|.+...+.++|.|
T Consensus 373 ~~i~SP~Fn~D~-tC~~GWvC-----EHRWrqI~~Mv~FrnAV---~~t~~~----------~w~d~g~nqIaF~R---- 429 (504)
T KOG2212|consen 373 GVIKSPTFNPDT-TCGNGWVC-----EHRWRQIRNMVNFRNAV---DGTPFT----------NWYDNGSNQIAFGR---- 429 (504)
T ss_pred cceecceeCCCC-cccCceee-----echHHHHHHHHhhhhhc---CCcccc----------ceeeCCCcEEEEec----
Confidence 111111 11112322 12345588999999852 222111 23366789999999
Q ss_pred CCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCC
Q 006791 565 GADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLE 601 (631)
Q Consensus 565 ~~~~lvv~N~~~~~~~~~lp~~~~~~~~~~~~~~~~~ 601 (631)
+.+-++++|...-..+..|.+....+++++++..+..
T Consensus 430 g~kGF~A~Nn~~~d~s~~l~T~LPAGtYCDviSG~~~ 466 (504)
T KOG2212|consen 430 GNRGFIAFNNDDWDFSLTLQTGLPAGTYCDVISGDKI 466 (504)
T ss_pred CCccEEEEeCcchhHHHHHhcCCCCCceeeeeccccc
Confidence 5567889998866655555554456899999977653
No 40
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.80 E-value=8.2e-19 Score=206.66 Aligned_cols=100 Identities=23% Similarity=0.365 Sum_probs=87.2
Q ss_pred CceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCC
Q 006791 103 DLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINF 182 (631)
Q Consensus 103 ~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~ 182 (631)
...+|-+.... .++|.+++++||||++||||+|||+||+++. + ..+|||++.||
T Consensus 743 P~atyrlq~~~-------------~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~---------~----gs~hGYdv~D~ 796 (1693)
T PRK14507 743 PRATYRLQFHK-------------DFTFADAEAILPYLAALGISHVYASPILKAR---------P----GSTHGYDIVDH 796 (1693)
T ss_pred cceeEEEEeCC-------------CCCHHHHHHHhHHHHHcCCCEEEECCCcCCC---------C----CCCCCCCCCCC
Confidence 45688887643 2899999999999999999999999999961 1 25789999999
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcc
Q 006791 183 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYT 236 (631)
Q Consensus 183 ~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~ 236 (631)
+.|+|.||+. ++|++||++||++||+||||+|+||++..+.+|+|+
T Consensus 797 ~~idp~lG~~--------edf~~Lv~~ah~~Gi~vilDiV~NH~~~~~~~n~w~ 842 (1693)
T PRK14507 797 SQINPEIGGE--------EGFERFCAALKAHGLGQLLDIVPNHMGVGGADNPWW 842 (1693)
T ss_pred CccCcccCCH--------HHHHHHHHHHHHCCCEEEEEecccccCCCccCCHHH
Confidence 9999999998 999999999999999999999999999654456655
No 41
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.69 E-value=1.7e-14 Score=150.78 Aligned_cols=159 Identities=25% Similarity=0.426 Sum_probs=109.3
Q ss_pred CCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhchHHH---------------HcCCceEEECCCcccchhhh-----
Q 006791 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLL---------------ELGINAVELLPVFEFDEMEF----- 161 (631)
Q Consensus 102 ~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk---------------~LGvt~I~L~Pi~~~~~~~~----- 161 (631)
....|-||||..-+.. |++.||++-...|. =.|+++|+||||=...+...
T Consensus 177 ~P~nILQiHv~TAsp~----------GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~ 246 (811)
T PF14872_consen 177 APRNILQIHVGTASPE----------GTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPG 246 (811)
T ss_pred CCceeEEEecCCCCCC----------cchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCC
Confidence 4678999999987643 99999987533332 27999999999955321100
Q ss_pred ----h--------------------------hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----chHHHHHHHH
Q 006791 162 ----Q--------------------------RRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPL----KASWEFKEMV 207 (631)
Q Consensus 162 ----~--------------------------~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~----~~~~e~k~lV 207 (631)
. .+|+ ..+|||++.= +|+...+|. -|.+||-.||
T Consensus 247 h~Ff~~~~~d~~~~~~~~~~~~~~~~v~v~L~kPd-----tqNWGYDv~I-------~GsaAtNPalL~TlRPDElVdfi 314 (811)
T PF14872_consen 247 HEFFSIRPEDEDELDPETEGVHEDGDVTVTLRKPD-----TQNWGYDVVI-------LGSAATNPALLETLRPDELVDFI 314 (811)
T ss_pred CceeeecccccccccccccccccCceEEEEecCCC-----ccccCcceee-------eccCCCCHHHHhcCCcHHHHHHH
Confidence 0 1121 4699999753 333322222 3669999999
Q ss_pred HHHHH---CCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHH
Q 006791 208 KALHG---AGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHW 284 (631)
Q Consensus 208 ~~~H~---~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W 284 (631)
.+||. ..|+||+|+||.|.-..+. ..+ +..|+. .+ .-.|-+||+.+|.||..+++.-+.=
T Consensus 315 atLHnFp~gPIqvIyDlVyGHADNQ~~--~LL-------n~~flk-GP-------nMYGQdlnhq~P~VRAILLEmQRRK 377 (811)
T PF14872_consen 315 ATLHNFPTGPIQVIYDLVYGHADNQAL--DLL-------NRRFLK-GP-------NMYGQDLNHQNPVVRAILLEMQRRK 377 (811)
T ss_pred HHHhcCCCCCeEEEEeeecccccchhh--Hhh-------hhhhcc-CC-------ccccccccccChHHHHHHHHHHHhh
Confidence 99997 6799999999999764211 111 111211 00 1126789999999999999998888
Q ss_pred HHHcCccEEEEecccc
Q 006791 285 VVEYHVDGFRFDLASV 300 (631)
Q Consensus 285 ~~e~giDGfR~D~~~~ 300 (631)
+ .+|+||+|+|-+.-
T Consensus 378 ~-n~GaDGIRVDGgQD 392 (811)
T PF14872_consen 378 I-NTGADGIRVDGGQD 392 (811)
T ss_pred c-ccCCceeEeccccc
Confidence 8 89999999996643
No 42
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=7.1e-16 Score=163.71 Aligned_cols=88 Identities=24% Similarity=0.361 Sum_probs=81.2
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
=+|....+.||||++|||.|+|++|||... + .+.||||++|+..|+|.+|+. +.|.+||
T Consensus 16 FtF~~A~~~l~yl~~LGIShLY~SPIftA~-------p------GStHGYDVvD~t~InPeLGG~--------egl~rLv 74 (889)
T COG3280 16 FTFADARALLDYLADLGISHLYLSPIFTAR-------P------GSTHGYDVVDPTEINPELGGE--------EGLERLV 74 (889)
T ss_pred CCHHHHHHhhHHHHhcCchheeccchhhcC-------C------CCCCCccCCCccccChhhcCh--------HHHHHHH
Confidence 389999999999999999999999999972 2 368999999999999999998 9999999
Q ss_pred HHHHHCCCEEEEEeecccccCCCCCCCcc
Q 006791 208 KALHGAGIEVILDVVYNHTNEADDANPYT 236 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~~~~~~~~~~~ 236 (631)
.++|++||++|+|+|+||++.++..+||+
T Consensus 75 aalk~~GlGlI~DIVPNHMav~g~~N~ww 103 (889)
T COG3280 75 AALKSRGLGLIVDIVPNHMAVGGHENPWW 103 (889)
T ss_pred HHHHhcCCceEEEecccchhcccccChHH
Confidence 99999999999999999999986677776
No 43
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.49 E-value=4.3e-14 Score=162.13 Aligned_cols=92 Identities=20% Similarity=0.314 Sum_probs=78.8
Q ss_pred CcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 006791 127 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEM 206 (631)
Q Consensus 127 ~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~l 206 (631)
-|+|.+..++|+|||+||+|.||||||++.+ ..++.|++.||+.+||.||... ...++|++|
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G--------------~SnS~Ysi~Dyl~idP~~~~~~----~~~~d~~~l 189 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELG--------------GSNSCYSLYDQLQLNQHFKSQK----DGKNDVQAL 189 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCccCC--------------CCCCCccccchhhcChhhcccC----CcHHHHHHH
Confidence 4999999999999999999999999999862 1456999999999999996310 012899999
Q ss_pred HHHHHHC-CCEEEEEeecccccCCCCCCCccccc
Q 006791 207 VKALHGA-GIEVILDVVYNHTNEADDANPYTTSF 239 (631)
Q Consensus 207 V~~~H~~-Gi~VilDvV~NH~~~~~~~~~~~~~~ 239 (631)
|+++|++ ||+||+|+|+|||+. +|+|+..+
T Consensus 190 V~~~h~~~Gm~~ilDvV~NHTa~---ds~Wl~eH 220 (1464)
T TIGR01531 190 VEKLHRDWNVLSITDIVFNHTAN---NSPWLLEH 220 (1464)
T ss_pred HHHHHHhcCCEEEEEeeeccccc---CCHHHHhC
Confidence 9999997 999999999999997 77787543
No 44
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.97 E-value=1.4e-09 Score=90.03 Aligned_cols=89 Identities=22% Similarity=0.339 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCCCCCcCCCCCCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEE
Q 006791 516 FFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRV 595 (631)
Q Consensus 516 ~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~~~~~lvv~N~~~~~~~~~lp~~~~~~~~~~~ 595 (631)
|||+||+|||++|+|+.+++..+ .+. ......++++.|..+ ++.++|++|+++++++++ + ...++.+
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~---~~~----~~~~~~l~~~~r~~~-~~~l~v~~Nls~~~~~~~-~----~~~~~~l 67 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFL---EVE----RDAPDALLAFRRTGG-GERLLVAFNLSDEPVTVP-E----GPWGEVL 67 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEE---EEE----EEEETTEEEEEEEET-TEEEEEEEE-SSS-EEEE-T----SCCEEEE
T ss_pred CHHHHHHHHhhCccccCCCcccE---EEE----ecCCCEEEEEEEEcC-CceEEEEEecCCCcEEcc-C----CCCCeEE
Confidence 79999999999999999977543 110 023466778888655 689999999999999988 2 2346666
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeEEEcCcEEEEE
Q 006791 596 VDTNLESPDDIVPEGAAGTGSTYNLSPYSSILL 628 (631)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~vl 628 (631)
+.+.... .+..++|||++++|+
T Consensus 68 ~~s~~~~-----------~~~~~~L~p~~~~v~ 89 (89)
T PF11941_consen 68 FSSEPAR-----------AGGAGTLPPWSVVVL 89 (89)
T ss_dssp EECSCSS-----------E--EEEE-TTEEEEE
T ss_pred EcCCCcc-----------cccCceECCCEEEEC
Confidence 6554322 112899999999986
No 45
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.95 E-value=2.1e-09 Score=94.04 Aligned_cols=65 Identities=62% Similarity=1.125 Sum_probs=54.3
Q ss_pred EeeCCCCCcCCCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCcccC
Q 006791 3 ELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFG 68 (631)
Q Consensus 3 ~~~~~~~~~~~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~ 68 (631)
+++|++..++++++|+++|+++ .+|.+|+|+|+++..|..|++++++++++||||++|.+...++
T Consensus 37 ~~~m~~~~~~~~gvW~~~v~~~-~~g~~Y~y~v~g~~~p~~g~~~~~~~~~~DPYA~a~~~~~~~~ 101 (119)
T cd02852 37 EIELDPSVNRTGDVWHVFVEGL-KPGQLYGYRVDGPFEPEQGHRFDPSKVLLDPYAKAVSGDEYFG 101 (119)
T ss_pred EEeCcCcccccCCEEEEEECCC-CCCCEEEEEECCCCCCCcccccCCCcEEECCCcCeEcCccccC
Confidence 4555555566788999999985 5899999999987777889999999999999999998877654
No 46
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.83 E-value=1.2e-08 Score=105.80 Aligned_cols=94 Identities=23% Similarity=0.316 Sum_probs=80.7
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
|+|....++|..++++|+|.|+++|+++.+. .+..|.+.|...++|.+... +.....+++++||
T Consensus 19 G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~--------------S~S~YSI~Dql~~~~~~~~~--~~~~~~~~v~~~v 82 (423)
T PF14701_consen 19 GPFSDWEKHLKVISEKGYNMIHFTPLQERGE--------------SNSPYSIYDQLKFDPDFFPP--GKESTFEDVKEFV 82 (423)
T ss_pred CCHhHHHHHHHHHHHcCCcEEEecccccCCC--------------CCCCccccchhhcChhhcCC--CccccHHHHHHHH
Confidence 9999999999999999999999999999721 23479999999999999875 2334568999999
Q ss_pred HHHH-HCCCEEEEEeecccccCCCCCCCcccccC
Q 006791 208 KALH-GAGIEVILDVVYNHTNEADDANPYTTSFR 240 (631)
Q Consensus 208 ~~~H-~~Gi~VilDvV~NH~~~~~~~~~~~~~~~ 240 (631)
.+++ +.||.+|.|||+|||+. +++|+..++
T Consensus 83 ~~~~~~~~ll~~~DvV~NHtA~---nS~Wl~eHP 113 (423)
T PF14701_consen 83 KEAEKKYGLLSMTDVVLNHTAN---NSPWLREHP 113 (423)
T ss_pred HHHHHHcCceEEEEEeeccCcC---CChHHHhCc
Confidence 9995 79999999999999997 788886553
No 47
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.70 E-value=3e-08 Score=84.28 Aligned_cols=57 Identities=33% Similarity=0.785 Sum_probs=47.8
Q ss_pred CcCCCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCccc
Q 006791 10 VNKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHF 67 (631)
Q Consensus 10 ~~~~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~ 67 (631)
.+.++++|+++++++ .+|.+|+|+|+++..+..|+++++..+++||||+++++...+
T Consensus 40 ~~~~~GvW~~~v~~~-~~g~~Y~y~i~g~~~p~~~~~~~~~~~~~DPYA~~~~~~~~~ 96 (103)
T cd02856 40 TEEYGGVWHGFLPGI-KAGQRYGFRVHGPYDPERGLRFNPAKLLLDPYARALDGPLAY 96 (103)
T ss_pred ccccCCEEEEEECCC-CCCCEEEEEECCccCcccCcccCCCeEEecCCcceEcCCccC
Confidence 345677999999985 589999999999666778888888889999999999875543
No 48
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=98.49 E-value=1.6e-07 Score=84.94 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcCCCCC-CceeeeccccCCCCCcEEEEEEecCC---------CCeEEEEEeCCCCcEEE
Q 006791 512 SHYRFFSEVIKFRQSRRVFGREDFLNI-NDVTWHEDNWDNYDSKFLAFTLHDNN---------GADIYLAFNAHDFFVKV 581 (631)
Q Consensus 512 ~~~~~~~~Li~lR~~~~~l~~g~~~~~-~~~~~~~~~~~~~~~~vla~~r~~~~---------~~~~lvv~N~~~~~~~~ 581 (631)
...++|++|++||+++|.|+.++...+ ..+.|+... .+...++|++...++. -+.++||||.+.+++++
T Consensus 42 ~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G-~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~~~t~ 120 (168)
T PF11852_consen 42 AASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTG-PDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPEEQTF 120 (168)
T ss_dssp HHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-S-TT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS-EEE
T ss_pred HHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCC-CCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCCeEEE
Confidence 568999999999999999999987554 357787543 2456899999998732 14699999999999999
Q ss_pred EcCCCCCCCCeEEEEeCCCCCCCCCCCCC-CCCCCCeEEEcCcEEEEEEe
Q 006791 582 SLPPPPPKRQWFRVVDTNLESPDDIVPEG-AAGTGSTYNLSPYSSILLEA 630 (631)
Q Consensus 582 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~p~s~~vl~~ 630 (631)
.+|... + |. |..-............ .....++++|||++++||..
T Consensus 121 ~~~~~~--g-~~-Lhpvq~~~~D~~v~~a~~~~~~G~~tVPa~T~aVFv~ 166 (168)
T PF11852_consen 121 TVPGLA--G-FQ-LHPVQAESSDPVVKQASFDAANGTFTVPARTVAVFVQ 166 (168)
T ss_dssp ETGGGS--S--E-E-HHHHTGSGTTGGGTEEETTTTEEEE-TTEEEEEEE
T ss_pred EcCCcC--c-eE-echHHhcccchhhhceeEecCCCeEEECCceEEEEEe
Confidence 999642 2 43 3322211111111111 11225689999999999974
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.46 E-value=1.5e-06 Score=76.69 Aligned_cols=122 Identities=21% Similarity=0.312 Sum_probs=81.2
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
+-+++||++|+++|-+.---- ..|-|-|+.-...+|.++ . +-|+++|++||++|
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h-----------------~g~ayYPt~~~~~hp~L~-~--------Dllge~v~a~h~~G 57 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCH-----------------GGYAYYPTKVGPRHPGLK-R--------DLLGEQVEACHERG 57 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccc-----------------cEEEEccCCCCcCCCCCC-c--------CHHHHHHHHHHHCC
Confidence 347899999999999754110 123455666666677777 4 78999999999999
Q ss_pred CEEEEEeecc--cccCCCCCCCcccccCCCCCCcCeeeCCCCCcc---ccCCCC-CCCCCCCHHHHHHHHHHHHHHHHHc
Q 006791 215 IEVILDVVYN--HTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCG-NTLNCNHPVVMELILDSLRHWVVEY 288 (631)
Q Consensus 215 i~VilDvV~N--H~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~---~~~~~~-~~ln~~~~~v~~~i~~~~~~W~~e~ 288 (631)
|+|+.=+-++ .... ..| |.|+..+++|... .+...+ ..+..+. ..+++++..++--++.|
T Consensus 58 irv~ay~~~~~d~~~~--~~H-----------PeW~~~~~~G~~~~~~~~~~~~~~~~c~ns-~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 58 IRVPAYFDFSWDEDAA--ERH-----------PEWFVRDADGRPMRGERFGYPGWYTCCLNS-PYREFLLEQIREILDRY 123 (132)
T ss_pred CEEEEEEeeecChHHH--HhC-----------CceeeECCCCCCcCCCCcCCCCceecCCCc-cHHHHHHHHHHHHHHcC
Confidence 9999655554 2111 123 5677766665521 111111 1233333 45689999999999889
Q ss_pred CccEEEEe
Q 006791 289 HVDGFRFD 296 (631)
Q Consensus 289 giDGfR~D 296 (631)
.+|||=||
T Consensus 124 ~~DGiF~D 131 (132)
T PF14871_consen 124 DVDGIFFD 131 (132)
T ss_pred CCCEEEec
Confidence 99999988
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.43 E-value=2.1e-06 Score=87.96 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=81.5
Q ss_pred CHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 006791 129 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 208 (631)
Q Consensus 129 ~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~ 208 (631)
+-..+.+.|+.|+++|+|+|.+-=.... .. .+. .-+.|...+......... .-+-|+.||+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~g-da-----------~Y~-S~~~p~s~~~~g~~~~~p------g~DpL~~~I~ 77 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRG-DA-----------LYP-SDIEPWSGYLTGKQGKDP------GFDPLEFMIE 77 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCc-EE-----------Eec-ccccccccccCCCCCCCC------CccHHHHHHH
Confidence 4566788899999999999986432211 00 000 012221111111111111 1266999999
Q ss_pred HHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCcccc---CCCCCCCCCCCHHHHHHHHHHHHHHH
Q 006791 209 ALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNY---AGCGNTLNCNHPVVMELILDSLRHWV 285 (631)
Q Consensus 209 ~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~---~~~~~~ln~~~~~v~~~i~~~~~~W~ 285 (631)
+||++||+|..=+.+...... .+.... .++.++.....+..... .+...-||-.+|+||++|++.++--+
T Consensus 78 eaHkrGlevHAW~~~~~~~~~--~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv 150 (311)
T PF02638_consen 78 EAHKRGLEVHAWFRVGFNAPD--VSHILK-----KHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIV 150 (311)
T ss_pred HHHHcCCEEEEEEEeecCCCc--hhhhhh-----cCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHH
Confidence 999999999977755443221 111110 01222221111111111 11123478899999999999999999
Q ss_pred HHcCccEEEEe
Q 006791 286 VEYHVDGFRFD 296 (631)
Q Consensus 286 ~e~giDGfR~D 296 (631)
+.|.|||+.||
T Consensus 151 ~~YdvDGIhlD 161 (311)
T PF02638_consen 151 KNYDVDGIHLD 161 (311)
T ss_pred hcCCCCeEEec
Confidence 99999999999
No 51
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=98.23 E-value=1e-06 Score=73.68 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=53.7
Q ss_pred CCCCcEEEEEEecCCCCeEEEEEeCCCC--cEEEEcCCCCCCCCeEEEEeCCCCCCCCC-C--CCCC---CCCCCeEEEc
Q 006791 550 NYDSKFLAFTLHDNNGADIYLAFNAHDF--FVKVSLPPPPPKRQWFRVVDTNLESPDDI-V--PEGA---AGTGSTYNLS 621 (631)
Q Consensus 550 ~~~~~vla~~r~~~~~~~~lvv~N~~~~--~~~~~lp~~~~~~~~~~~~~~~~~~~~~~-~--~~~~---~~~~~~~~l~ 621 (631)
+.+++|+||.|.+.+++.++||+|+++. ...+.++.+. +++|+.+++++....... . ...+ .....+++||
T Consensus 6 d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~-~g~y~~vlnsd~~~~~g~~~~~~~~v~~~~~g~~~~~lp 84 (95)
T PF02806_consen 6 DNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPE-AGRYKEVLNSDDEEYGGSGKGNSGEVTVDSNGRITVTLP 84 (95)
T ss_dssp EESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSS-SEEEEETTTTTCEEEEESSCSETSEEEEETTSEEEEEES
T ss_pred cCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCC-cceeeEEeCCCccEECCcccccCceEEEeeCCEEEEEEC
Confidence 4678999999986422389999999987 4455555432 678999998875432110 0 0000 0112379999
Q ss_pred CcEEEEEEeC
Q 006791 622 PYSSILLEAK 631 (631)
Q Consensus 622 p~s~~vl~~~ 631 (631)
|+|++||+.|
T Consensus 85 ~~s~~vl~~~ 94 (95)
T PF02806_consen 85 PYSALVLKLK 94 (95)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEc
Confidence 9999999854
No 52
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.09 E-value=3.4e-06 Score=71.23 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=37.9
Q ss_pred cCCCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCccc
Q 006791 11 NKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHF 67 (631)
Q Consensus 11 ~~~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~ 67 (631)
.+++++|+++|++. .+|..|+|+|++.. .+..+++||||+++..+...
T Consensus 43 ~~~~gvw~~~v~~~-~~g~~Y~y~i~~~~--------~~~~~~~DPyA~~~~~~~~~ 90 (100)
T cd02860 43 RGENGVWSVTLDGD-LEGYYYLYEVKVYK--------GETNEVVDPYAKALSANGER 90 (100)
T ss_pred cCCCCEEEEEeCCc-cCCcEEEEEEEEec--------eEEEEEcCcccEeEeeCCCc
Confidence 35778999999984 68999999998752 12357899999999876544
No 53
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.70 E-value=3.9e-05 Score=82.48 Aligned_cols=110 Identities=21% Similarity=0.276 Sum_probs=63.6
Q ss_pred CCCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCC
Q 006791 100 PEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST 179 (631)
Q Consensus 100 ~~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~ 179 (631)
.....||||=|- -|..-+.. ...-+..-|++..+-+|++|||..||-|-+-+..+.--..+ .-.-||+-
T Consensus 561 ALDSqvIYEgFS-NFQ~~~t~----~~eytN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDS------iiqNGYAF 629 (809)
T PF02324_consen 561 ALDSQVIYEGFS-NFQDFPTT----PSEYTNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDS------IIQNGYAF 629 (809)
T ss_dssp HHHT-EEEE----TTB---SS----GGGSHHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHH------HTT-SSSB
T ss_pred hhhcchhhcccc-ccccCCCC----hHHHHHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhh------HhhcCccc
Confidence 345679999643 23222111 11256678888999999999999999999887332100000 01238888
Q ss_pred CCCCC----CCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccC
Q 006791 180 INFFS----PMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 228 (631)
Q Consensus 180 ~d~~~----~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~ 228 (631)
+|-|. -..+|||. +||+.-|+++|+.||+||.|+|++.+..
T Consensus 630 tDRYDLg~s~ptKYGs~--------~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 630 TDRYDLGMSKPTKYGSV--------EDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp S-TT-SSSSS-BTTB-H--------HHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred cchhhhcCCCCCCCCCH--------HHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 77663 35689997 9999999999999999999999999874
No 54
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.0003 Score=73.36 Aligned_cols=146 Identities=18% Similarity=0.070 Sum_probs=82.0
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
.+=..+.+.|+.|+.||||+|+..=.-.... .+.+ -+.|..=..+ ..+|..++ -+=|..+|
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~------------lypS-~~~p~s~~~~-~~~~~~~g-----~DpLa~~I 121 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDA------------LYPS-AVLPWSDGLP-GVLGVDPG-----YDPLAFVI 121 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccc------------cccc-cccccccCcC-cccCCCCC-----CChHHHHH
Confidence 4556788889999999999999432211100 0000 1111110000 00111111 15699999
Q ss_pred HHHHHCCCEEEEEeecccccCCC----CCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 006791 208 KALHGAGIEVILDVVYNHTNEAD----DANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRH 283 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~~~~~----~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~ 283 (631)
++||++||+|+-=+-+--++... ..||....- +-...-|+.... ... ..=||-.+|+||++|.+.+.-
T Consensus 122 ~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~-~~~~~~~~~~~~--~~~-----~~~ldPg~Pevq~~i~~lv~e 193 (418)
T COG1649 122 AEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTT-KRPGWVYVRHQG--WGK-----RVWLDPGIPEVQDFITSLVVE 193 (418)
T ss_pred HHHHhcCCeeeechhhcccCCCCChhHhhCCCCccc-CCCCeEEEecCC--cee-----eeEeCCCChHHHHHHHHHHHH
Confidence 99999999999776665555421 011111000 001112222111 001 123677899999999999999
Q ss_pred HHHHcCccEEEEecccc
Q 006791 284 WVVEYHVDGFRFDLASV 300 (631)
Q Consensus 284 W~~e~giDGfR~D~~~~ 300 (631)
-++.|.|||+-||---.
T Consensus 194 vV~~YdvDGIQfDd~fy 210 (418)
T COG1649 194 VVRNYDVDGIQFDDYFY 210 (418)
T ss_pred HHhCCCCCceecceeec
Confidence 99999999999994333
No 55
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=97.61 E-value=0.02 Score=62.43 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=27.5
Q ss_pred cCHH-HHHhhchHHHHcCCceEEECCCccc
Q 006791 128 GSYL-GLIQKIPHLLELGINAVELLPVFEF 156 (631)
Q Consensus 128 G~~~-gl~~~LdyLk~LGvt~I~L~Pi~~~ 156 (631)
|||. ++.+-++.+++.|++.|+|+|++..
T Consensus 23 GDfg~dl~~~id~~~~~G~~~~qilPl~~~ 52 (497)
T PRK14508 23 GDFGKGAYEFIDFLAEAGQSYWQILPLGPT 52 (497)
T ss_pred cchHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 9995 9999999999999999999999986
No 56
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.57 E-value=0.00061 Score=69.86 Aligned_cols=132 Identities=21% Similarity=0.366 Sum_probs=85.7
Q ss_pred cCHHHHHhhchHHHHcCC--ceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCchHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFK 204 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~-~yGt~~~~~~~~~~e~k 204 (631)
-+-..|.+.++.++++|| ++|+|=--+.. .+| + |..++ +|- +.+
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~-----------------~~g----~-f~~d~~~FP-----------dp~ 73 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET-----------------CYG----D-FDFDPTKFP-----------DPK 73 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc-----------------cCC----c-cccChhhCC-----------CHH
Confidence 456778888899999996 45554321111 111 2 22332 442 489
Q ss_pred HHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCC--c--cccCCCCCCCCCCCHHHHHHHHHH
Q 006791 205 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQ--L--LNYAGCGNTLNCNHPVVMELILDS 280 (631)
Q Consensus 205 ~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~--~--~~~~~~~~~ln~~~~~v~~~i~~~ 280 (631)
+||+++|++|+++++=+-+ +++. +++.+ +......|+..++.+. + ..+.+.+.-+|+.||++++.+.+.
T Consensus 74 ~mi~~l~~~G~k~~l~i~P-~i~~---~s~~~---~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 146 (303)
T cd06592 74 GMIDQLHDLGFRVTLWVHP-FINT---DSENF---REAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSR 146 (303)
T ss_pred HHHHHHHHCCCeEEEEECC-eeCC---CCHHH---HhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHH
Confidence 9999999999999998887 4443 22222 2222234555554431 1 112233456899999999999999
Q ss_pred HHHHHHHcCccEEEEeccc
Q 006791 281 LRHWVVEYHVDGFRFDLAS 299 (631)
Q Consensus 281 ~~~W~~e~giDGfR~D~~~ 299 (631)
++..+.+.|||||-+|...
T Consensus 147 ~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 147 LKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred HHHHHHHhCCcEEEeCCCC
Confidence 9999989999999999644
No 57
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.53 E-value=0.00083 Score=69.23 Aligned_cols=138 Identities=14% Similarity=0.165 Sum_probs=88.8
Q ss_pred cCHHHHHhhchHHHHcC--CceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCchHHHHH
Q 006791 128 GSYLGLIQKIPHLLELG--INAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM-SRYAAGGGGPLKASWEFK 204 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LG--vt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d-~~yGt~~~~~~~~~~e~k 204 (631)
.+=..+.+.++.+++.| +++|+|=.=+.. +|.-.+ |..+ .+|. +.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~-------------------~~~~~~-f~~d~~~FP-----------d~~ 69 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMK-------------------EFQWCD-FEFDPDRFP-----------DPE 69 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEeccccc-------------------CCccee-eEECcccCC-----------CHH
Confidence 35567778889999999 555665442221 111112 3333 3553 378
Q ss_pred HHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc---ccCCCCCCCCCCCHHHHHHHHHHH
Q 006791 205 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELILDSL 281 (631)
Q Consensus 205 ~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~---~~~~~~~~ln~~~~~v~~~i~~~~ 281 (631)
+||+++|++|++|++-+.+ +++. +++.+.. .....|+..+..+... .+.+.+.-+|+.||++++++.+.+
T Consensus 70 ~~i~~l~~~G~~~~~~~~P-~i~~---~~~~~~e---~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 142 (308)
T cd06593 70 GMLSRLKEKGFKVCLWINP-YIAQ---KSPLFKE---AAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKL 142 (308)
T ss_pred HHHHHHHHCCCeEEEEecC-CCCC---CchhHHH---HHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHH
Confidence 9999999999999999986 5554 2332221 1123455554333321 122333468999999999999999
Q ss_pred HHHHHHcCccEEEEecccccccC
Q 006791 282 RHWVVEYHVDGFRFDLASVLCRG 304 (631)
Q Consensus 282 ~~W~~e~giDGfR~D~~~~l~~~ 304 (631)
+.++ +.|||||-+|....++.+
T Consensus 143 ~~~~-~~Gid~~~~D~~e~~p~~ 164 (308)
T cd06593 143 KPLL-DMGVDCFKTDFGERIPTD 164 (308)
T ss_pred HHHH-HhCCcEEecCCCCCCCcc
Confidence 9988 689999999976655443
No 58
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=97.39 E-value=7.8e-05 Score=58.84 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=44.1
Q ss_pred CCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCcEEEEEE
Q 006791 551 YDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 629 (631)
Q Consensus 551 ~~~~vla~~r~~~~~~~~lvv~N~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~vl~ 629 (631)
+.++|++|.|..+ ++.++|++|.+++++++++.. +.+++..... ..++.+.........++|+|+++.||.
T Consensus 7 P~~gvYvYfR~~~-~~tVmVilN~n~~~~~ldl~r------y~E~l~~~~~-~~diltg~~i~l~~~l~l~~~~~~ILe 77 (78)
T PF10438_consen 7 PQDGVYVYFRYYD-GKTVMVILNKNDKEQTLDLKR------YAEVLGGFTS-AKDILTGKTIDLSKNLTLPPKSVLILE 77 (78)
T ss_dssp -BTTEEEEEEEES-SEEEEEEEE-SSS-EEEEGGG------GHHHHTT--E-EEETTT--EEE-SSEEEE-TTEEEEEE
T ss_pred ccCCEEEEEEEcC-CCEEEEEEcCCCCCeEEcHHH------HHHhhCCCcc-eEECCCCCEEecCCcEEECCCceEEEE
Confidence 5689999999988 899999999999999999863 2222221111 011222222223468999999999986
No 59
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.32 E-value=0.0011 Score=71.74 Aligned_cols=283 Identities=18% Similarity=0.187 Sum_probs=138.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHH---------HcCccEEEEecccccccCCCCCCCCChHHHHHHHh----ccccCCCe
Q 006791 263 GNTLNCNHPVVMELILDSLRHWVV---------EYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK----DAILSRCK 329 (631)
Q Consensus 263 ~~~ln~~~~~v~~~i~~~~~~W~~---------e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~----~~~~~~~~ 329 (631)
.+|++-+||.|+.+-+.++-|.+. +..+||||+||+..+.-+. ..-+...+++.-. ++.--.-+
T Consensus 143 aNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADl---Lqia~dyfkaaYgv~~~~a~An~Hl 219 (809)
T PF02324_consen 143 ANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADL---LQIAGDYFKAAYGVDKNDANANKHL 219 (809)
T ss_dssp SEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THH---HHHHHHHHHHHH-TTTBHHHHCTC-
T ss_pred eccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHH---HHHHHHHHHHHhCCCcChhhHhhhh
Confidence 478899999999999999999996 6789999999999986551 0000011222111 01112346
Q ss_pred EeeccCCCCCc-ccc--CCCCCccchhhhhhhhHHHHHHHHcCCCCcHHHHHHHhhCCccccccC--CCCCCcceeeeec
Q 006791 330 IIAEPWDCRGL-YLV--GKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVN--KRKPYHSINFIIA 404 (631)
Q Consensus 330 li~E~w~~~~~-~~~--~~~~~~~~~~~~n~~f~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~nf~~~ 404 (631)
-|-|.|..+.. |.. |+.. -.|+..++..+...+......+..+...+..+....... ...+...-.||.+
T Consensus 220 SilE~ws~nd~~y~~~~g~~q-----L~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~en~a~pNYsFvrA 294 (809)
T PF02324_consen 220 SILEAWSSNDPDYVKDTGNPQ-----LTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDSTENEAQPNYSFVRA 294 (809)
T ss_dssp -EESSSTTTHHHHHHHTTSSS-----BEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE--SSESS-EEEES-B
T ss_pred eeeeccccCChHHHhcCCCce-----eeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCCcCCcccCceeeeec
Confidence 78899987632 211 1111 346677778887777665555554444444433221111 1122345678999
Q ss_pred cCCCc---hhhhhhhccccccccCCCCCCCCCCCCccCCCCCCCCCcHHHHHHH---H-----------HHHHHHHHHHH
Q 006791 405 HDGFT---LYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALR---S-----------RQMKNFHLALM 467 (631)
Q Consensus 405 HD~~~---l~d~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~---~-----------~~~~~a~~~l~ 467 (631)
||..- +.+++.. +++. ..+|.. .+.+..-..+. . -.+-.+.|+||
T Consensus 295 HDsevQ~vI~~II~~--~i~~-----~~dg~t-----------~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllL 356 (809)
T PF02324_consen 295 HDSEVQTVIAQIIKD--KINP-----NSDGLT-----------FTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLL 356 (809)
T ss_dssp SSTTTHHHHHHHHHH--HT-T-----TTCTTC-------------HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh--hcCC-----cccCcc-----------CCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHH
Confidence 99641 1122221 1110 001110 01111100000 0 12456778888
Q ss_pred hcC-CceeeecccccccccCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCCCCcCCCCCCceeeecc
Q 006791 468 VSQ-GTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHED 546 (631)
Q Consensus 468 ~~p-GiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~~~~~~~~Li~lR~~~~~l~~g~~~~~~~~~~~~~ 546 (631)
+-. -||-+||||-+-..+. | | . .+...++-+-.|++-|.++-+ .|.... +.+.
T Consensus 357 tNKDTVPRVYYGDLYtDdGQ-----Y--------M---a---~KSpYyDaI~tLLKaRikYva--GGQtM~---~~~~-- 410 (809)
T PF02324_consen 357 TNKDTVPRVYYGDLYTDDGQ-----Y--------M---A---TKSPYYDAITTLLKARIKYVA--GGQTMA---VTYL-- 410 (809)
T ss_dssp H-SSSEEEEEHHHHBESSSS-----T--------T---T---SB-TTHHHHHHHHHHHHHH----S-EEEE---E--E--
T ss_pred hCCCCCceEEecccccccch-----h--------h---h---hcCchHHHHHHHHHHHHHhhc--CCceee---eecc--
Confidence 865 8999999997665431 1 1 1 223568889999999998643 222111 1111
Q ss_pred ccCCCCCcEEEEEEecCC--------------CCeEEEEEeCC------CCcEEEEcCCCCCCCCeEEEEeCC
Q 006791 547 NWDNYDSKFLAFTLHDNN--------------GADIYLAFNAH------DFFVKVSLPPPPPKRQWFRVVDTN 599 (631)
Q Consensus 547 ~~~~~~~~vla~~r~~~~--------------~~~~lvv~N~~------~~~~~~~lp~~~~~~~~~~~~~~~ 599 (631)
.....+||.=.|-.++ ....+||-|.. .+.+.+.......+..++.|+.+.
T Consensus 411 --~~~~~~vLtSVRyGkgam~a~d~G~~~tRt~Gi~vii~Nnp~l~l~~~d~v~lnMGaAHkNQ~YR~llltT 481 (809)
T PF02324_consen 411 --NGDNSGVLTSVRYGKGAMTATDTGTAETRTSGIGVIISNNPNLKLNSNDTVVLNMGAAHKNQAYRPLLLTT 481 (809)
T ss_dssp --EETTTSEEEEEE-BTTBSSTT----CCCCT--EEEEEES-TT-B--TT-EEEEE--GGGTT-EEEEEEEEE
T ss_pred --cCCCCceEEEEecCCCcCcccccCCccceeceeEEEEcCCcccccCCCCeEEEecchhhccccchhhhhcc
Confidence 0134578888886552 12344444543 235566666666667788777554
No 60
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.00019 Score=79.07 Aligned_cols=93 Identities=19% Similarity=0.227 Sum_probs=70.3
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
|.|.....+|.-.|+-|+|-|+++|+++-+. ...-|...|-..+++.+..... .-..+|.++||
T Consensus 139 Gpl~eWeprL~va~e~gYNmIHfTPlqelG~--------------S~S~YSl~dql~~~~~~~~~~~--k~s~eDV~~lV 202 (1521)
T KOG3625|consen 139 GPLDEWEPRLRVAKESGYNMIHFTPLQELGL--------------SRSCYSLADQLELNPDFSRPNR--KYSFEDVGQLV 202 (1521)
T ss_pred CChhhhhHHHHHHHHcCCceEeeeeHHHhcc--------------CCCccchHhhhhcChhhhccCC--CCCHHHHHHHH
Confidence 7777777889999999999999999999721 2336777776666666663211 00129999999
Q ss_pred HHHHH-CCCEEEEEeecccccCCCCCCCccccc
Q 006791 208 KALHG-AGIEVILDVVYNHTNEADDANPYTTSF 239 (631)
Q Consensus 208 ~~~H~-~Gi~VilDvV~NH~~~~~~~~~~~~~~ 239 (631)
+.||+ -||--|-|||+|||+. .++|+..+
T Consensus 203 ~~l~rewnvlsi~DvV~NHtAn---ns~WlleH 232 (1521)
T KOG3625|consen 203 EKLKREWNVLSITDVVYNHTAN---NSKWLLEH 232 (1521)
T ss_pred HHHHhhcCeeeeehhhhhcccc---CCchhHhC
Confidence 99997 5999999999999997 66676443
No 61
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.30 E-value=0.00068 Score=70.58 Aligned_cols=95 Identities=21% Similarity=0.253 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcc---cccCCCCCCcCeeeCCCCCc----cccCCCCCCCCCCCHHHH
Q 006791 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYT---TSFRGIDNKVYYMVDGTGQL----LNYAGCGNTLNCNHPVVM 274 (631)
Q Consensus 202 e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~---~~~~~~~~~~yy~~~~~~~~----~~~~~~~~~ln~~~~~v~ 274 (631)
+.++||+++|++|++|++=+.+ ++... .++.. ..+.......|+..+..+.. ..+.|.+.-+|+.||+++
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P-~i~~~--~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~ 162 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIP-IIKLR--PHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAA 162 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecC-ccccc--cccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHH
Confidence 5899999999999999985554 22210 01100 01111112356666544432 123344456899999999
Q ss_pred HHHHHHHHHHHHHcCccEEEEeccc
Q 006791 275 ELILDSLRHWVVEYHVDGFRFDLAS 299 (631)
Q Consensus 275 ~~i~~~~~~W~~e~giDGfR~D~~~ 299 (631)
+...+.++.+++++|||||-+|...
T Consensus 163 ~Ww~~~~~~~~~~~Gidg~w~D~~E 187 (340)
T cd06597 163 QWWMEKRRYLVDELGIDGFKTDGGE 187 (340)
T ss_pred HHHHHHHHHHHHhcCCcEEEecCCC
Confidence 9999999999988999999999654
No 62
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=97.30 E-value=0.0004 Score=58.13 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=33.8
Q ss_pred CCCEEEEEEcCCC------CCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCc
Q 006791 13 TGDIWHICIEDLP------RSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRR 65 (631)
Q Consensus 13 ~g~vw~~~i~~~~------~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~ 65 (631)
..++|+++||++. .+|..|+|+|...+ |.. ..++||||+.++.++
T Consensus 39 ~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~----G~~----~~~~DPyA~~~~~~~ 89 (99)
T cd02854 39 EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPS----GEW----IDRIPAWIKYVTQDK 89 (99)
T ss_pred CCCEEEEEECCcccccccCCCCCEEEEEEEeCC----CCE----EEEcCcceeEEEeCC
Confidence 3459999999731 38999999998743 222 367999999997654
No 63
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=97.28 E-value=0.002 Score=78.31 Aligned_cols=121 Identities=16% Similarity=0.211 Sum_probs=80.0
Q ss_pred HHHHhcCCceeeecccccccccCCCCCCCCCCCCCCccccccccc--------------------------ccchHHHHH
Q 006791 464 LALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLET--------------------------KKNSHYRFF 517 (631)
Q Consensus 464 ~~l~~~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~--------------------------~~~~~~~~~ 517 (631)
++-+|+||||=||+|.|+=.- +.-.+++|.|+|+..... ...-=+-.+
T Consensus 1501 lLklt~PGVPD~YQG~E~wd~------SLVDPDNRRPVDf~~r~~~L~~l~~~~~~~~~~~~~~~l~~~~~dG~iKl~l~ 1574 (1693)
T PRK14507 1501 LLKLTLPGVPDTYQGTEFWDF------SLVDPDNRRPVDYAARARALEALGAMHAEGGHAACPDALLGSWQDGRIKLAVL 1574 (1693)
T ss_pred HHHHcCCCCCcccCCcccccc------cCcCCCCCCCCCHHHHHHHHHhhhhcccccccccchhhhhccCCCchHHHHHH
Confidence 344899999999999996532 234567777888752210 000124568
Q ss_pred HHHHHHHhcCCCC-CCcCCCCCCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeC-----------------CCCcE
Q 006791 518 SEVIKFRQSRRVF-GREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNA-----------------HDFFV 579 (631)
Q Consensus 518 ~~Li~lR~~~~~l-~~g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~~~~~lvv~N~-----------------~~~~~ 579 (631)
.+++++|+++|.| ..|++..+ .+. ....++++||.|... +..++||+=. .+...
T Consensus 1575 ~~~L~lRr~~p~lF~~G~Y~PL-~~~------G~~~~hv~AFaR~~~-~~~~vvvvpR~~~~l~~~~~~~~~~~~~W~dT 1646 (1693)
T PRK14507 1575 WRLLADRRARPALFRDGDYRPL-KAE------GARAEHVVAFARRRG-GDDLVVAVPRLVARLAGEDGELPWSAEAWAGT 1646 (1693)
T ss_pred HHHHHHHHhChhhhccCCeeEE-ecc------CCccccEEEEEecCC-CcEEEEEEecchhhhhcccccCCcccCCCCCC
Confidence 9999999999975 56887655 111 134678999999876 5666665422 23455
Q ss_pred EEEcCCCCCCCCeEEEEeCC
Q 006791 580 KVSLPPPPPKRQWFRVVDTN 599 (631)
Q Consensus 580 ~~~lp~~~~~~~~~~~~~~~ 599 (631)
.+.||.. ..+.|++++.+.
T Consensus 1647 ~~~LP~~-~~~~w~d~ltg~ 1665 (1693)
T PRK14507 1647 VVPLVLP-AGSRWVDVLTGR 1665 (1693)
T ss_pred EEeCCCc-cCccceEeccCc
Confidence 7888853 345799999754
No 64
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.16 E-value=0.0059 Score=64.46 Aligned_cols=171 Identities=12% Similarity=0.123 Sum_probs=92.3
Q ss_pred HHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCchHHHHHHHHH
Q 006791 130 YLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM-SRYAAGGGGPLKASWEFKEMVK 208 (631)
Q Consensus 130 ~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d-~~yGt~~~~~~~~~~e~k~lV~ 208 (631)
-..|.+.++.++++|++.+.|===+... .+. .....| |+ .++ .+|- ..|+.|++
T Consensus 57 e~~i~~~a~~~~~~G~e~fviDDGW~~~-------r~~---d~~~~G----dW-~~~~~kFP----------~Gl~~l~~ 111 (394)
T PF02065_consen 57 EEKILELADAAAELGYEYFVIDDGWFGG-------RDD---DNAGLG----DW-EPDPKKFP----------NGLKPLAD 111 (394)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-SSSBCT-------EST---TTSTTS----BE-CBBTTTST----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhCCEEEEEcCccccc-------cCC---CcccCC----ce-eEChhhhC----------CcHHHHHH
Confidence 3556666788899999877652211110 000 001112 22 222 3453 56999999
Q ss_pred HHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 006791 209 ALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 288 (631)
Q Consensus 209 ~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~ 288 (631)
.+|++||+.=|=+-+--++.++ ..... +++|....+.... .....+--||+.+|+|++++.+.+.-.++++
T Consensus 112 ~i~~~Gmk~GlW~ePe~v~~~S---~l~~~-----hPdw~l~~~~~~~-~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~ 182 (394)
T PF02065_consen 112 YIHSLGMKFGLWFEPEMVSPDS---DLYRE-----HPDWVLRDPGRPP-TLGRNQYVLDLSNPEVRDYLFEVIDRLLREW 182 (394)
T ss_dssp HHHHTT-EEEEEEETTEEESSS---CHCCS-----SBGGBTCCTTSE--ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCeEEEEeccccccchh---HHHHh-----CccceeecCCCCC-cCcccceEEcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999998877776632 22211 1333332211111 0111122489999999999999999999999
Q ss_pred CccEEEEecccccccCCCCCCCC--------ChHHHHHHHhccccCCCeEeeccCC
Q 006791 289 HVDGFRFDLASVLCRGTDGSPLN--------APPLIRAIAKDAILSRCKIIAEPWD 336 (631)
Q Consensus 289 giDGfR~D~~~~l~~~~~~~~~~--------~~~~l~~i~~~~~~~~~~li~E~w~ 336 (631)
|||.|-+|....+..-......+ ...+++++++ ..|++.+-.-.+.
T Consensus 183 gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~--~~P~v~iE~CssG 236 (394)
T PF02065_consen 183 GIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRA--RFPDVLIENCSSG 236 (394)
T ss_dssp T-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHH--HTTTSEEEE-BTT
T ss_pred CCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHH--hCCCcEEEeccCC
Confidence 99999999766554321111000 0123444443 4677776665554
No 65
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.14 E-value=0.0028 Score=65.41 Aligned_cols=91 Identities=13% Similarity=0.221 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCc----cccCCCCCCCCCCCHHHHHHH
Q 006791 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL----LNYAGCGNTLNCNHPVVMELI 277 (631)
Q Consensus 202 e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~----~~~~~~~~~ln~~~~~v~~~i 277 (631)
+.++||+++|++|++|++-+.+- +.. +++.+ +......|+..+..+.. ..+.|.+.-+|+.||++++..
T Consensus 74 dp~~mi~~L~~~g~k~~~~i~P~-i~~---~~~~y---~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww 146 (317)
T cd06599 74 DPAAFVAKFHERGIRLAPNIKPG-LLQ---DHPRY---KELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWW 146 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-ccC---CCHHH---HHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHH
Confidence 47899999999999999965543 333 23322 22222456655433221 122333345899999999999
Q ss_pred HHHHHHHHHHcCccEEEEeccc
Q 006791 278 LDSLRHWVVEYHVDGFRFDLAS 299 (631)
Q Consensus 278 ~~~~~~W~~e~giDGfR~D~~~ 299 (631)
.+.++.-+.+.|||||=+|...
T Consensus 147 ~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 147 KEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred HHHHHHHHhcCCCcEEEecCCC
Confidence 9999666668999999999543
No 66
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.09 E-value=0.00063 Score=55.41 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCcCCCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeecccccee
Q 006791 9 RVNKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLV 61 (631)
Q Consensus 9 ~~~~~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~ 61 (631)
+...++++|+++++++ +|..|+|+|+.. ..+.||||++.
T Consensus 34 m~~~~~G~W~~~v~~~--~g~~Y~y~v~~~------------~~~~DP~a~~~ 72 (85)
T cd02853 34 MQRDGDGWFEAEVPGA--AGTRYRYRLDDG------------TPVPDPASRFQ 72 (85)
T ss_pred CccCCCcEEEEEeCCC--CCCeEEEEECCC------------cCCCCCccccC
Confidence 3445667999999984 799999999731 24799999985
No 67
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=97.08 E-value=0.0096 Score=65.24 Aligned_cols=162 Identities=14% Similarity=0.224 Sum_probs=82.1
Q ss_pred CHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCchHHHH
Q 006791 129 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-----RYAAGGGGPLKASWEF 203 (631)
Q Consensus 129 ~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~-----~yGt~~~~~~~~~~e~ 203 (631)
+.....+.|+.|+++-||.|++== |-|.-...+..+. .+-.. .+..-..+-+
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYD----------------------W~~rH~~Pl~~~~~~~~~~w~D~-~~r~i~~~~V 172 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYD----------------------WMYRHHKPLPGTNGQPDQTWTDW-ANRQISTSTV 172 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS------------------------SBTTB-S-SSS-EEE-TT-TT-T--EEEHHHH
T ss_pred CchhHHHHHHHHHhhCcCeEEEEe----------------------eccccCCcCCCCCCchhhhhhhh-cCCEehHHHH
Confidence 567777889999999999999533 3333332222222 22111 0111123789
Q ss_pred HHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeC-CCCC---ccccCC-C---CCCCCCCCHHHHH
Q 006791 204 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVD-GTGQ---LLNYAG-C---GNTLNCNHPVVME 275 (631)
Q Consensus 204 k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~-~~~~---~~~~~~-~---~~~ln~~~~~v~~ 275 (631)
|.+|++||+.||++|.=.-..-...+... .|.. +.|+... +.+. ...+.. + .--+|..|+.=|+
T Consensus 173 k~yI~~ah~~Gmkam~Ynmiyaa~~~~~~-------~gv~-~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~ 244 (559)
T PF13199_consen 173 KDYINAAHKYGMKAMAYNMIYAANNNYEE-------DGVS-PEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQN 244 (559)
T ss_dssp HHHHHHHHHTT-EEEEEEESSEEETT--S---------SS--GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHH
T ss_pred HHHHHHHHHcCcceehhHhhhccccCccc-------ccCC-chhhhhhccCCCccceeecCcccccceEEecCCCHHHHH
Confidence 99999999999999963322222111000 1222 2333332 2211 111111 1 1134788999999
Q ss_pred HHHHHHHHHHHHcCccEEEEecccccccC--CCCCCC-----CChHHHHHHHh
Q 006791 276 LILDSLRHWVVEYHVDGFRFDLASVLCRG--TDGSPL-----NAPPLIRAIAK 321 (631)
Q Consensus 276 ~i~~~~~~W~~e~giDGfR~D~~~~l~~~--~~~~~~-----~~~~~l~~i~~ 321 (631)
+|++.+...++.+|+|||.+|..+..... ..|... ....||+++++
T Consensus 245 yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~ 297 (559)
T PF13199_consen 245 YIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKE 297 (559)
T ss_dssp HHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHH
Confidence 99999999999999999999987754332 223222 12467887766
No 68
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=96.98 E-value=0.002 Score=66.42 Aligned_cols=141 Identities=14% Similarity=0.213 Sum_probs=86.3
Q ss_pred cCHHHHHhhchHHHHcCC--ceEEECCCcccchhhhhhcCCCCCCCCCCCCCCC-CCCCCCCC-CCCCCCCCCCchHHHH
Q 006791 128 GSYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST-INFFSPMS-RYAAGGGGPLKASWEF 203 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~-~d~~~~d~-~yGt~~~~~~~~~~e~ 203 (631)
++-..+.+-++.+++.|| ++|||- .... - ....+||.. .+ |..|+ +| -+.
T Consensus 20 ~s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~----------~---~~~~~g~~~~~~-f~~d~~~F-----------Pdp 73 (317)
T cd06594 20 GGTDKVLEALEKARAAGVKVAGLWLQ-DWTG----------R---RETSFGDRLWWN-WEWDPERY-----------PGL 73 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEc-cccC----------c---ccccccceeeee-eEEChhhC-----------CCH
Confidence 366778888889998876 557774 2210 0 011223321 11 22222 33 248
Q ss_pred HHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCc---cccCCCCCCCCCCCHHHHHHHHHH
Q 006791 204 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL---LNYAGCGNTLNCNHPVVMELILDS 280 (631)
Q Consensus 204 k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~---~~~~~~~~~ln~~~~~v~~~i~~~ 280 (631)
++||+++|++|++||+-+. .++..+ ...+ ++......|+..++++.. ..+.+.+.-+|+.||++++...+-
T Consensus 74 ~~mi~~Lh~~G~~~~~~i~-P~v~~~--~~~~---y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 147 (317)
T cd06594 74 DELIEELKARGIRVLTYIN-PYLADD--GPLY---YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQV 147 (317)
T ss_pred HHHHHHHHHCCCEEEEEec-CceecC--Cchh---HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHH
Confidence 9999999999999999554 454431 1111 122222455655544432 122333456899999999999999
Q ss_pred HHHHHHHcCccEEEEecccc
Q 006791 281 LRHWVVEYHVDGFRFDLASV 300 (631)
Q Consensus 281 ~~~W~~e~giDGfR~D~~~~ 300 (631)
++..+.++|||||=+|.-..
T Consensus 148 ~~~~~~~~Gvdg~w~D~~E~ 167 (317)
T cd06594 148 IKEMLLDLGLSGWMADFGEY 167 (317)
T ss_pred HHHHhhhcCCcEEEecCCCC
Confidence 99886789999999996543
No 69
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=96.95 E-value=0.0024 Score=47.74 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=30.2
Q ss_pred EEEEecCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCcEEEEEE
Q 006791 557 AFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 629 (631)
Q Consensus 557 a~~r~~~~~~~~lvv~N~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~vl~ 629 (631)
+-.|..+ +..+++++|+++++++++||. .+.++++..... ..++|+|+.+.||+
T Consensus 4 v~~R~~~-~~~y~F~~N~s~~~~~v~l~~-----~~~dll~g~~~~-------------~~~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 4 VTVREND-GGRYLFLLNFSDEPQTVTLPE-----SYTDLLTGETVS-------------GGLTLPPYGVRVLK 57 (58)
T ss_dssp EEE-----ETTEEEEEE-SSS-EE----T-----T-EEEES--------------------SEE-TTEEEEEE
T ss_pred EEEEEcC-CCEEEEEEECCCCCEEEEcCC-----CceecccCccee-------------eEEEECCCEEEEEE
Confidence 4456554 688999999999999999965 578888654321 23899999999997
No 70
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=96.88 E-value=0.12 Score=62.70 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=27.9
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCccc
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEF 156 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~ 156 (631)
|||..+.+-++.+++.|.+.|+|+|++..
T Consensus 743 GDf~dl~~~vd~~a~~G~~~~qilPl~~~ 771 (1221)
T PRK14510 743 GDFEELYALVDFLAEGGQSLWGVNPLHPL 771 (1221)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 99999999999999999999999999885
No 71
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=96.79 E-value=0.001 Score=54.18 Aligned_cols=39 Identities=36% Similarity=0.880 Sum_probs=26.8
Q ss_pred cCCCCEEEEEEc-CCCCCC-cEEEEEEEcCCCCCCCcccCCCceeecccc
Q 006791 11 NKTGDIWHICIE-DLPRSE-VLYGYRVDGPRDWHQGHRFDSSIVLIDPYA 58 (631)
Q Consensus 11 ~~~g~vw~~~i~-~~~~~g-~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya 58 (631)
+.++++|+++++ +++ +| .+|+|+|++.. | ....++||||
T Consensus 45 ~~~~G~w~~~~~~~~~-~g~~~Y~y~i~~~~----g----~~~~~~DPYA 85 (85)
T PF02922_consen 45 KDDDGVWEVTVPGDLP-PGGYYYKYRIDGDD----G----ETPEVVDPYA 85 (85)
T ss_dssp ECTTTEEEEEEEGCGT-TTT-EEEEEEEETT----T----EEEEET-TT-
T ss_pred cCCCCEEEEEEcCCcC-CCCEEEEEEEEeCC----C----cEEEEeCCCC
Confidence 356679999999 443 45 69999999864 2 2247899997
No 72
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.76 E-value=0.16 Score=58.27 Aligned_cols=92 Identities=22% Similarity=0.332 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCcccc---CCCCCCCCCCCHHHHHHHH
Q 006791 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNY---AGCGNTLNCNHPVVMELIL 278 (631)
Q Consensus 202 e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~---~~~~~~ln~~~~~v~~~i~ 278 (631)
+.|+||+.+|++||++|.=+.+.=.. +++.+ +......|+..+++|....+ .+.+.-+|+.||++|+...
T Consensus 322 ~pk~mi~~l~~~Gikl~~~i~P~i~~----d~~~~---~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~ 394 (772)
T COG1501 322 DPKQMIAELHEKGIKLIVIINPYIKQ----DSPLF---KEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWA 394 (772)
T ss_pred CHHHHHHHHHhcCceEEEEecccccc----CCchH---HHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHH
Confidence 46799999999999999887765433 33332 22222467776666554332 2234567999999999999
Q ss_pred H-HHHHHHHHcCccEEEEeccccc
Q 006791 279 D-SLRHWVVEYHVDGFRFDLASVL 301 (631)
Q Consensus 279 ~-~~~~W~~e~giDGfR~D~~~~l 301 (631)
+ ....++ ++|||||=.|.....
T Consensus 395 ~~~~~~l~-d~Gv~g~W~D~nEp~ 417 (772)
T COG1501 395 SDKKKNLL-DLGVDGFWNDMNEPE 417 (772)
T ss_pred HHHHhHHH-hcCccEEEccCCCCc
Confidence 5 445566 999999999965544
No 73
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=96.76 E-value=0.0021 Score=70.24 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=63.6
Q ss_pred HHHHhcCCceeeecccccccccCCCCCCCCCCCCCCcccccccc-------ccc--------ch-HHHHHHHHHHHHhcC
Q 006791 464 LALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE-------TKK--------NS-HYRFFSEVIKFRQSR 527 (631)
Q Consensus 464 ~~l~~~pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~-------~~~--------~~-~~~~~~~Li~lR~~~ 527 (631)
.+-+|.||||=||+|.|.-..- --.+++|.|+|..... ..+ .. =...+.+++++|+++
T Consensus 713 LlkltaPGVPD~YQGtE~wd~S------LVDPDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~K~~v~~~aL~lR~~~ 786 (889)
T COG3280 713 LLKLTAPGVPDIYQGTELWDFS------LVDPDNRRPVDFATRAQALKALQEGDFELLEHWLDGIKQAVTAAALRLRREH 786 (889)
T ss_pred HHHHcCCCCCccccchhhhhcc------ccCCCCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhHHHHHHHHHHHHHHhc
Confidence 3448999999999999965321 2334555566554322 010 01 133578999999999
Q ss_pred CC-CCCcCCCCCCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeC
Q 006791 528 RV-FGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNA 574 (631)
Q Consensus 528 ~~-l~~g~~~~~~~~~~~~~~~~~~~~~vla~~r~~~~~~~~lvv~N~ 574 (631)
|. |..|++..+.- . ....+.++||.|... ++.+++|.+.
T Consensus 787 ~elF~~GdY~Pl~~---~----G~~a~hviAFaR~~~-~~~~i~v~Pr 826 (889)
T COG3280 787 PELFAGGDYLPLFA---A----GPAADHVIAFARGKD-DQFAITVAPR 826 (889)
T ss_pred hHhhcCCCeeeecc---c----CchhHHHHHHhhccC-CceeEEeehH
Confidence 97 78888876510 0 134578999999877 6777777764
No 74
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.74 E-value=0.0045 Score=63.99 Aligned_cols=91 Identities=20% Similarity=0.330 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCc--cccCCCCCCCCCCCHHHHHHHHH
Q 006791 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL--LNYAGCGNTLNCNHPVVMELILD 279 (631)
Q Consensus 202 e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~--~~~~~~~~~ln~~~~~v~~~i~~ 279 (631)
+.++||+.+|++|++||+-+. -++.. .++.+ +......|+..+..+.. ..+.|...-+|+.||++++...+
T Consensus 67 dp~~mi~~L~~~G~kv~~~i~-P~v~~---~~~~y---~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~ 139 (319)
T cd06591 67 DPKAMVRELHEMNAELMISIW-PTFGP---ETENY---KEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWK 139 (319)
T ss_pred CHHHHHHHHHHCCCEEEEEec-CCcCC---CChhH---HHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHH
Confidence 468999999999999999554 34443 22222 22222456555543321 12333345689999999999888
Q ss_pred HHHHHHHHcCccEEEEeccc
Q 006791 280 SLRHWVVEYHVDGFRFDLAS 299 (631)
Q Consensus 280 ~~~~W~~e~giDGfR~D~~~ 299 (631)
.++.-+.++|||||=+|...
T Consensus 140 ~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 140 QLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred HHHHHhhcCCCcEEEecCCC
Confidence 77665558999999999654
No 75
>smart00632 Aamy_C Aamy_C domain.
Probab=96.74 E-value=0.0052 Score=49.44 Aligned_cols=71 Identities=15% Similarity=0.273 Sum_probs=45.4
Q ss_pred CCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCC-CCCCeEEEcCcEEEEE
Q 006791 550 NYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAA-GTGSTYNLSPYSSILL 628 (631)
Q Consensus 550 ~~~~~vla~~r~~~~~~~~lvv~N~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~p~s~~vl 628 (631)
..++.+++|.| ++..+|++|.+...++..+......+.|++++...-.. ..+ .+. .....++|||.+++++
T Consensus 5 ~~~~~~laF~R----g~~g~VaiN~~~~~~~~~~~t~lp~G~Y~d~l~g~~~g-~~v---~V~~~G~~~~~l~~~~~v~i 76 (81)
T smart00632 5 DNGDNQIAFER----GSKGFVAINRSDSDLTITLQTSLPAGTYCDVISGLCTG-KSV---TVGSNGIATFTLPAGGAVAI 76 (81)
T ss_pred ECCCeEEEEEC----CCeEEEEEECCCCceEEEEeecCCCcceEEEecCcccC-CEE---EECCCCEEEEEECCCCeEEE
Confidence 34455999999 57789999999877777765544457899988641100 000 111 1234789999994444
No 76
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.56 E-value=0.0065 Score=62.71 Aligned_cols=93 Identities=18% Similarity=0.243 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCc---cccCCCCCCCCCCCHHHHHHHH
Q 006791 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL---LNYAGCGNTLNCNHPVVMELIL 278 (631)
Q Consensus 202 e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~---~~~~~~~~~ln~~~~~v~~~i~ 278 (631)
+.++||+.+|++|++|++=+.+- +.... ..+ .+.......|+..+..+.. ..+.|...-+|+.||++++...
T Consensus 65 dp~~~i~~l~~~g~k~~~~~~P~-i~~~~-~~~---~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~ 139 (317)
T cd06600 65 EPKKLIDELHKRNVKLVTIVDPG-IRVDQ-NYS---PFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWA 139 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeecc-ccCCC-CCh---HHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHH
Confidence 47899999999999999966543 33211 111 1211111345555444331 1223333457999999999999
Q ss_pred HHHHHHHHHcCccEEEEeccc
Q 006791 279 DSLRHWVVEYHVDGFRFDLAS 299 (631)
Q Consensus 279 ~~~~~W~~e~giDGfR~D~~~ 299 (631)
+.++..+.+.|||||=+|...
T Consensus 140 ~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 140 GLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHHHHhhcCCCceEEeeCCC
Confidence 999998878999999999543
No 77
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=96.26 E-value=0.014 Score=60.76 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=61.1
Q ss_pred HHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCc---cccCCCCCCCCCCCHHHHHHHHHH
Q 006791 204 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL---LNYAGCGNTLNCNHPVVMELILDS 280 (631)
Q Consensus 204 k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~---~~~~~~~~~ln~~~~~v~~~i~~~ 280 (631)
++||+++|++|++|++=+.+ ++...... .....++......||..+..+.. ..+.|.+.-+|+.||++++...+.
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P-~v~~~~~~-~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 146 (339)
T cd06602 69 PEFVDELHANGQHYVPILDP-AISANEPT-GSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDE 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeC-ccccCcCC-CCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHH
Confidence 99999999999999997654 33321000 00111211112355555544432 122333445799999999999999
Q ss_pred HHHHHHHcCccEEEEeccc
Q 006791 281 LRHWVVEYHVDGFRFDLAS 299 (631)
Q Consensus 281 ~~~W~~e~giDGfR~D~~~ 299 (631)
++..+.++|||||=+|...
T Consensus 147 ~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 147 IKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred HHHHHhcCCCcEEEecCCC
Confidence 9998878999999999644
No 78
>PLN02635 disproportionating enzyme
Probab=96.22 E-value=0.025 Score=61.88 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=31.5
Q ss_pred EEecCcccCCCCCCCCCCCCcCHHHHH-hhchHHHHcCCceEEECCCccc
Q 006791 108 EMNVRAFTGDESSGLDPEIRGSYLGLI-QKIPHLLELGINAVELLPVFEF 156 (631)
Q Consensus 108 ei~v~~F~~~~~~~~~~~~~G~~~gl~-~~LdyLk~LGvt~I~L~Pi~~~ 156 (631)
-+|+-++-. +-|+ |||.... +-++.+++.|.+.++|+|++..
T Consensus 33 ll~l~SLps--~~GI-----GDfg~~a~~fvd~la~~G~~~wQilPL~pt 75 (538)
T PLN02635 33 LLHPTSLPG--PYGI-----GDLGDEAFRFLDWLASTGCSVWQVLPLVPP 75 (538)
T ss_pred EEccccCCC--CCCC-----cchHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 356655542 2344 9998766 6789999999999999999776
No 79
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.84 E-value=0.11 Score=52.87 Aligned_cols=138 Identities=20% Similarity=0.172 Sum_probs=83.1
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
|+=..+-+.|+.+++-|+|+|-+- ..+ + .+.-.|....-.+ ...|.. ...+.++++|+
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVID----vKd----------d--~G~i~y~s~~~~~--~~~ga~----~~~i~D~~~l~ 67 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVID----VKD----------D--DGNITYDSQVPLA--REIGAV----KPYIKDLKALV 67 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEE----Eec----------C--CceEEecCCCchh--hhcccc----cccccCHHHHH
Confidence 444456666899999999999752 200 0 1222344332222 223322 11147899999
Q ss_pred HHHHHCCCEEEEEeec-ccccCCCCCCCcccccCCCCCCcCeeeCCCCC-ccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 006791 208 KALHGAGIEVILDVVY-NHTNEADDANPYTTSFRGIDNKVYYMVDGTGQ-LLNYAGCGNTLNCNHPVVMELILDSLRHWV 285 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~-NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~-~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~ 285 (631)
+.||++||.+|.=+|. .-.--. ..+ +.|-.....|. +.+..+ ..=+|--+++|++|+++.++-..
T Consensus 68 ~~l~e~gIY~IARIv~FkD~~la-~~~-----------pe~av~~~~G~~w~d~~~-~~WvnP~~~evw~Y~i~IA~Eaa 134 (316)
T PF13200_consen 68 KKLKEHGIYPIARIVVFKDPVLA-EAH-----------PEWAVKTKDGSVWRDNEG-EAWVNPYSKEVWDYNIDIAKEAA 134 (316)
T ss_pred HHHHHCCCEEEEEEEEecChHHh-hhC-----------hhhEEECCCCCcccCCCC-CccCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999884 211000 012 23333222221 222111 12256678999999999999998
Q ss_pred HHcCccEEEEeccccc
Q 006791 286 VEYHVDGFRFDLASVL 301 (631)
Q Consensus 286 ~e~giDGfR~D~~~~l 301 (631)
..|+|.+-||-+.+-
T Consensus 135 -~~GFdEIqfDYIRFP 149 (316)
T PF13200_consen 135 -KLGFDEIQFDYIRFP 149 (316)
T ss_pred -HcCCCEEEeeeeecC
Confidence 789999999966554
No 80
>PRK10658 putative alpha-glucosidase; Provisional
Probab=95.80 E-value=0.025 Score=64.00 Aligned_cols=92 Identities=16% Similarity=0.277 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc---ccCCCCCCCCCCCHHHHHHHH
Q 006791 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELIL 278 (631)
Q Consensus 202 e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~---~~~~~~~~ln~~~~~v~~~i~ 278 (631)
+.++||+++|++|++|++=+.+ ++.. +++.+ +......|+..+++|... .|.+...-+|+.||++|+...
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~---~s~~f---~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~ 398 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQ---KSPLF---KEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYA 398 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCC---CchHH---HHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHH
Confidence 4689999999999999987665 3332 22322 222224566665555432 233334468999999999999
Q ss_pred HHHHHHHHHcCccEEEEeccccc
Q 006791 279 DSLRHWVVEYHVDGFRFDLASVL 301 (631)
Q Consensus 279 ~~~~~W~~e~giDGfR~D~~~~l 301 (631)
+-++.++ +.|||||-.|....+
T Consensus 399 ~~~~~l~-d~Gvdgfw~D~gE~~ 420 (665)
T PRK10658 399 DKLKGLL-DMGVDCFKTDFGERI 420 (665)
T ss_pred HHHHHHH-hcCCcEEEecCCcee
Confidence 9999987 799999999965444
No 81
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=95.41 E-value=0.037 Score=57.82 Aligned_cols=132 Identities=21% Similarity=0.267 Sum_probs=80.8
Q ss_pred CHHHHHhhchHHHHcCC--ceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCchHHHHHH
Q 006791 129 SYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFKE 205 (631)
Q Consensus 129 ~~~gl~~~LdyLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~-~yGt~~~~~~~~~~e~k~ 205 (631)
+-..+.+.++.+++.|| ++|+|=+-+.. +|.. |..++ +|- +.++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-------------------~~~~---f~~d~~~fP-----------dp~~ 68 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD-------------------GYRV---FTWDKERFP-----------DPKE 68 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC-------------------CCCc---eeeccccCC-----------CHHH
Confidence 45667777888998887 45665432211 1211 22232 332 4689
Q ss_pred HHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCc---cccCCCCCCCCCCCHHHHHHHHHHHH
Q 006791 206 MVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL---LNYAGCGNTLNCNHPVVMELILDSLR 282 (631)
Q Consensus 206 lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~---~~~~~~~~~ln~~~~~v~~~i~~~~~ 282 (631)
|++++|++|++|++=+.+ |+.... ..+ .|+......||..+.++.. ..+.|...-+|+.||++++...+.++
T Consensus 69 m~~~l~~~g~~~~~~~~P-~v~~~~-~~~---~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 143 (339)
T cd06604 69 LIKELHEQGFKVVTIIDP-GVKVDP-GYD---VYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYK 143 (339)
T ss_pred HHHHHHHCCCEEEEEEeC-ceeCCC-CCh---HHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHH
Confidence 999999999999987654 332210 111 1221112345555544431 12233334579999999999999999
Q ss_pred HHHHHcCccEEEEeccc
Q 006791 283 HWVVEYHVDGFRFDLAS 299 (631)
Q Consensus 283 ~W~~e~giDGfR~D~~~ 299 (631)
..+ +.|||||=+|...
T Consensus 144 ~~~-~~Gvdg~w~D~~E 159 (339)
T cd06604 144 KFV-DLGVDGIWNDMNE 159 (339)
T ss_pred HHh-hCCCceEeecCCC
Confidence 887 8999999999654
No 82
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.31 E-value=0.055 Score=55.91 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcC-eeeCCCCCc---cccCCCCCCCCCCCHHHHHHH
Q 006791 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY-YMVDGTGQL---LNYAGCGNTLNCNHPVVMELI 277 (631)
Q Consensus 202 e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~y-y~~~~~~~~---~~~~~~~~~ln~~~~~v~~~i 277 (631)
+.++||+.+|++|++|++=+.+- +.. +++.+.. .....| +.....+.. .-+.|.+--+|+.||++++..
T Consensus 71 dp~~mi~~L~~~G~k~~~~v~P~-v~~---~~~~y~e---~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~ 143 (317)
T cd06598 71 DPAGMIADLAKKGVKTIVITEPF-VLK---NSKNWGE---AVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWF 143 (317)
T ss_pred CHHHHHHHHHHcCCcEEEEEcCc-ccC---CchhHHH---HHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHH
Confidence 36899999999999999987642 332 2332221 112334 333222221 112233446799999999999
Q ss_pred HHHHHHHHHHcCccEEEEeccc
Q 006791 278 LDSLRHWVVEYHVDGFRFDLAS 299 (631)
Q Consensus 278 ~~~~~~W~~e~giDGfR~D~~~ 299 (631)
.+.++..+ +.|||||=+|...
T Consensus 144 ~~~~~~~~-~~Gvdg~w~D~~E 164 (317)
T cd06598 144 HDNYKKLI-DQGVTGWWGDLGE 164 (317)
T ss_pred HHHHHHhh-hCCccEEEecCCC
Confidence 99998875 8999999999543
No 83
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.22 E-value=0.018 Score=62.65 Aligned_cols=95 Identities=23% Similarity=0.417 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCc---cccCCCCCCCCCCCHHHHHHHH
Q 006791 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL---LNYAGCGNTLNCNHPVVMELIL 278 (631)
Q Consensus 202 e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~---~~~~~~~~~ln~~~~~v~~~i~ 278 (631)
++++|++.+|++|++|++-+.+ ++.. .++-...++......|+..++.+.. ..+.|.+.-+|+.+|++++...
T Consensus 84 d~~~~~~~l~~~G~~~~~~~~P-~v~~---~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~ 159 (441)
T PF01055_consen 84 DPKQMIDELHDQGIKVVLWVHP-FVSN---DSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWK 159 (441)
T ss_dssp THHHHHHHHHHTT-EEEEEEES-EEET---TTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHH
T ss_pred chHHHHHhHhhCCcEEEEEeec-ccCC---CCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHH
Confidence 5899999999999999999888 4443 2220001211111344544444311 1122234568999999999999
Q ss_pred HHHHHHHHHcCccEEEEecccc
Q 006791 279 DSLRHWVVEYHVDGFRFDLASV 300 (631)
Q Consensus 279 ~~~~~W~~e~giDGfR~D~~~~ 300 (631)
+.++..+..+|||||-+|....
T Consensus 160 ~~~~~~~~~~Gvdg~w~D~~E~ 181 (441)
T PF01055_consen 160 EQLKELLDDYGVDGWWLDFGEP 181 (441)
T ss_dssp HHHHHHHTTST-SEEEEESTTT
T ss_pred HHHHHHHhccCCceEEeecCCc
Confidence 9999999777999999996443
No 84
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=95.15 E-value=0.04 Score=46.74 Aligned_cols=43 Identities=35% Similarity=0.596 Sum_probs=31.6
Q ss_pred CCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeeccccceeccCc
Q 006791 14 GDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRR 65 (631)
Q Consensus 14 g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~~~~ 65 (631)
.++|++.+++. .++..|+|+|.... |.. ..+.||||+.+....
T Consensus 57 ~G~w~~~v~~~-~~~~~Y~~~v~~~~----g~~----~~~~DPYa~~~~~~~ 99 (106)
T cd02855 57 SGVWELFIPGL-GEGELYKYEILGAD----GHL----PLKADPYAFYSELRP 99 (106)
T ss_pred CCEEEEEECCC-CCCCEEEEEEECCC----CCE----EEeeCCCceeeEeCC
Confidence 56999999874 46778999998642 111 357899999886543
No 85
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=95.11 E-value=0.25 Score=55.57 Aligned_cols=140 Identities=16% Similarity=0.098 Sum_probs=78.0
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
-+-+.|...|+.||++|+|+|+|--+.+-.. + |....-|| |. ++=+.-.+..+ -+.-.+
T Consensus 331 qq~~~L~~lLdrlk~~G~ntV~lqafadp~g----------d------~~~~s~yf-P~-~~lp~r~d~f~---~~aw~l 389 (671)
T PRK14582 331 QQDRNIDVLIQRVKDMQISTVYLQAFADPDG----------D------GLVKELYF-PN-RLLPMRADLFN---RVAWQL 389 (671)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccCCCC----------C------cccccccc-Cc-cccccccCCcC---HHHHHH
Confidence 3457778889999999999999988755311 0 22222222 12 12111111111 222233
Q ss_pred HHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 006791 208 KALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVE 287 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e 287 (631)
+|++|++|..=+-+=-+.-.. ..+....++... ..... + ..+...|+--+|+||+.|.++..-.++.
T Consensus 390 --~~r~~v~v~AWmp~~~~~~~~-~~~~~~~~~~~~--------~~~~~-~-~~~~~rl~P~~pe~r~~i~~i~~dla~~ 456 (671)
T PRK14582 390 --RTRAGVNVYAWMPVLSFDLDP-TLPRVKRLDTGE--------GKAQI-H-PEQYRRLSPFDDRVRAQVGMLYEDLAGH 456 (671)
T ss_pred --HHhhCCEEEEeccceeeccCC-CcchhhhccccC--------Ccccc-C-CCCCcCCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999998665443332100 111110110000 00000 0 0123448888999999999999999988
Q ss_pred cCccEEEEeccccc
Q 006791 288 YHVDGFRFDLASVL 301 (631)
Q Consensus 288 ~giDGfR~D~~~~l 301 (631)
+.|||+-||--..+
T Consensus 457 ~~~dGilf~Dd~~l 470 (671)
T PRK14582 457 AAFDGILFHDDAVL 470 (671)
T ss_pred CCCceEEecccccc
Confidence 99999999944334
No 86
>PRK10426 alpha-glucosidase; Provisional
Probab=95.02 E-value=0.059 Score=60.84 Aligned_cols=95 Identities=14% Similarity=0.163 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccc---cCCCCCCCCCCCHHHHHHHH
Q 006791 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN---YAGCGNTLNCNHPVVMELIL 278 (631)
Q Consensus 202 e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~---~~~~~~~ln~~~~~v~~~i~ 278 (631)
+.++||+++|++|++|++=+.+-- .. +++. |+......|+..+.++.... +.+.+.-+|+.||++++...
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P~v-~~---~~~~---y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~ 342 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINPYL-AS---DGDL---CEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFK 342 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcCcc-CC---CCHH---HHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHH
Confidence 589999999999999999876532 22 2222 22222245666554443211 12223358999999999999
Q ss_pred HHHHHHHHHcCccEEEEeccccccc
Q 006791 279 DSLRHWVVEYHVDGFRFDLASVLCR 303 (631)
Q Consensus 279 ~~~~~W~~e~giDGfR~D~~~~l~~ 303 (631)
+.++..+.+.|||||=.|....++.
T Consensus 343 ~~~~~~~~~~Gvdg~w~D~~E~~p~ 367 (635)
T PRK10426 343 EVIKKNMIGLGCSGWMADFGEYLPT 367 (635)
T ss_pred HHHHHHHhhcCCCEEeeeCCCCCCC
Confidence 9987766699999999997665543
No 87
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=94.38 E-value=0.31 Score=55.42 Aligned_cols=41 Identities=17% Similarity=0.350 Sum_probs=32.5
Q ss_pred ecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcc
Q 006791 110 NVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFE 155 (631)
Q Consensus 110 ~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~ 155 (631)
++-+.....+-|+ |||..+.+-++.+++.|.+.+.|+|++.
T Consensus 149 qlySLrs~~~~GI-----GDfgdl~~l~d~~a~~G~~~~qlnPlha 189 (695)
T PRK11052 149 QLYTLRSEHNWGI-----GDFGDLKQMLEDVAKRGGDFIGLNPIHA 189 (695)
T ss_pred ccccCCCCCCCCe-----ecHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 3434433345555 9999998889999999999999999994
No 88
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=94.13 E-value=0.11 Score=54.27 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCc---cccCCCCCCCCCCCHHHHHHHH
Q 006791 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL---LNYAGCGNTLNCNHPVVMELIL 278 (631)
Q Consensus 202 e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~---~~~~~~~~~ln~~~~~v~~~i~ 278 (631)
+.++||+++|++|++|++-+.+--... . .++- |.......|+..+..+.. ..+.|...-+|+.||++++...
T Consensus 65 dp~~mi~~L~~~G~k~~~~~~P~v~~~-~-~~~~---y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~ 139 (339)
T cd06603 65 DPEKMQEKLASKGRKLVTIVDPHIKRD-D-GYYV---YKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWA 139 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEecCceecC-C-CCHH---HHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHH
Confidence 479999999999999999876543211 0 1121 211122345555544321 1233444568999999999999
Q ss_pred HHHHHHHH--HcCccEEEEecc
Q 006791 279 DSLRHWVV--EYHVDGFRFDLA 298 (631)
Q Consensus 279 ~~~~~W~~--e~giDGfR~D~~ 298 (631)
+-++..+. ..|||||=+|..
T Consensus 140 ~~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 140 SLFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred HHHHHHhhcccCCCceEEeccC
Confidence 99998875 469999999954
No 89
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=94.00 E-value=0.24 Score=54.31 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEeecc
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYN 224 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~N 224 (631)
++++++-+.|+.+||++|-|+.+-
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~ 235 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVF 235 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcce
Confidence 467888889999999999999863
No 90
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=93.72 E-value=0.23 Score=49.53 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHH
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 280 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~ 280 (631)
+++++.++.+|++|+||++=+-.+|.+.. + ....+++-++.+.++
T Consensus 51 ~~~~~~i~~l~~kG~KVl~sigg~~~~~~---------~--------------------------~~~~~~~~~~~fa~~ 95 (255)
T cd06542 51 TNKETYIRPLQAKGTKVLLSILGNHLGAG---------F--------------------------ANNLSDAAAKAYAKA 95 (255)
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCCCCC---------c--------------------------cccCCHHHHHHHHHH
Confidence 78999999999999999999877664420 0 011235567788888
Q ss_pred HHHHHHHcCccEEEEecc
Q 006791 281 LRHWVVEYHVDGFRFDLA 298 (631)
Q Consensus 281 ~~~W~~e~giDGfR~D~~ 298 (631)
+.-+++.||.||+-+|--
T Consensus 96 l~~~v~~yglDGiDiD~E 113 (255)
T cd06542 96 IVDTVDKYGLDGVDFDDE 113 (255)
T ss_pred HHHHHHHhCCCceEEeee
Confidence 888889999999999953
No 91
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=93.70 E-value=0.12 Score=52.62 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHH
Q 006791 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSL 281 (631)
Q Consensus 202 e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~ 281 (631)
+.++||+++|++|++||+-+.+...... ..+-+..+.. +.... ...+...-+|+.+|+.++...+.+
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~--~~~~y~~~~~---------~~~~~--~~~~~~~~~D~tnp~a~~~w~~~~ 141 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRA--HEDQYPEMAK---------ALGVD--PATEGPILFDLTNPKFMDAYFDNV 141 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCC--CcHHHHHHHH---------hcCCC--cccCCeEEecCCCHHHHHHHHHHH
Confidence 4799999999999999998877531110 0110111110 00000 001111247899999998777776
Q ss_pred HHHHHHcCccEEEEec
Q 006791 282 RHWVVEYHVDGFRFDL 297 (631)
Q Consensus 282 ~~W~~e~giDGfR~D~ 297 (631)
..-+.+.|||||=.|.
T Consensus 142 ~~~~~~~Gidg~W~D~ 157 (292)
T cd06595 142 HRPLEKQGVDFWWLDW 157 (292)
T ss_pred HHHHHhcCCcEEEecC
Confidence 6666689999999994
No 92
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=93.60 E-value=0.46 Score=49.31 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEee-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHH
Q 006791 201 WEFKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 279 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~ 279 (631)
+|+|++|+-|.++||.||-.+- +.|+.. |...++...... . ........||..+|++.+++.+
T Consensus 82 ~di~eiv~yA~~rgI~vIPEID~PGH~~a------~~~~~pel~~~~------~----~~~~~~~~l~~~~~~t~~f~~~ 145 (326)
T cd06564 82 EEFKELIAYAKDRGVNIIPEIDSPGHSLA------FTKAMPELGLKN------P----FSKYDKDTLDISNPEAVKFVKA 145 (326)
T ss_pred HHHHHHHHHHHHcCCeEeccCCCcHHHHH------HHHhhHHhcCCC------c----ccCCCcccccCCCHHHHHHHHH
Confidence 9999999999999999998886 789764 221111110000 0 1112235789999999999999
Q ss_pred HHHHHHHHcC--ccEEEE
Q 006791 280 SLRHWVVEYH--VDGFRF 295 (631)
Q Consensus 280 ~~~~W~~e~g--iDGfR~ 295 (631)
.+.-.++-|. -+-|.+
T Consensus 146 l~~E~~~~f~~~~~~~Hi 163 (326)
T cd06564 146 LFDEYLDGFNPKSDTVHI 163 (326)
T ss_pred HHHHHHHhcCCCCCEEEe
Confidence 9999997666 344443
No 93
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=93.11 E-value=0.12 Score=41.91 Aligned_cols=36 Identities=25% Similarity=0.572 Sum_probs=24.2
Q ss_pred CCCEEEEEEcCCCCCC-cEEEEEEEcCCCCCCCcccCCCceeeccccceec
Q 006791 13 TGDIWHICIEDLPRSE-VLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVE 62 (631)
Q Consensus 13 ~g~vw~~~i~~~~~~g-~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~~ 62 (631)
..|+|+++++.++ .| +.|+|+|++ ..+.||+++...
T Consensus 38 ~~G~W~~~v~~l~-~g~Y~Y~~~vdg-------------~~~~DP~s~~~~ 74 (85)
T cd02858 38 EAGVWSVTTGPLA-PGIYTYSFLVDG-------------VRVIDPSNPTTK 74 (85)
T ss_pred CCeEEEEEECCCC-CcEEEEEEEECC-------------eEecCCCCCcee
Confidence 3459999997643 34 466776654 256899987653
No 94
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=92.98 E-value=0.3 Score=57.04 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc---ccCCCCCCCCCCCHHHHHHHH
Q 006791 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELIL 278 (631)
Q Consensus 202 e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~---~~~~~~~~ln~~~~~v~~~i~ 278 (631)
+.++||+.+|++|++||.=+.+ ++.. +..+. .++......+|..+..+... .|.|...-.||.||++|++..
T Consensus 242 dP~~mv~~Lh~~G~kvv~iidP-gI~~---d~gY~-~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~ 316 (978)
T PLN02763 242 DPKGLADDLHSIGFKAIWMLDP-GIKA---EEGYF-VYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWA 316 (978)
T ss_pred CHHHHHHHHHHCCCEEEEEEcC-CCcc---CCCCH-HHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHH
Confidence 4689999999999999875433 2221 11111 12211123445554444321 222323346899999999999
Q ss_pred HHHHHHHHHcCccEEEEecc
Q 006791 279 DSLRHWVVEYHVDGFRFDLA 298 (631)
Q Consensus 279 ~~~~~W~~e~giDGfR~D~~ 298 (631)
+.++.++ +.|||||=+|.-
T Consensus 317 ~~~k~l~-d~GVDG~W~Dmn 335 (978)
T PLN02763 317 NLVKDFV-SNGVDGIWNDMN 335 (978)
T ss_pred HHHHHHh-cCCCcEEEccCC
Confidence 9999888 699999999964
No 95
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=92.54 E-value=0.39 Score=44.39 Aligned_cols=70 Identities=9% Similarity=0.115 Sum_probs=46.3
Q ss_pred HHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 006791 131 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 210 (631)
Q Consensus 131 ~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~ 210 (631)
..-.+.+.++|++||++|-|+=. . +...-+-|+.++ .+.+-..+ .+-+..+.++|
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq~~--~---------------~~~~~~yps~~~--~~~~~~~~------~d~l~~~L~~A 74 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQWT--G---------------YGGFAFYPSKLS--PGGFYMPP------VDLLEMILDAA 74 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEe--e---------------cCCcccCCcccc--CccccCCc------ccHHHHHHHHH
Confidence 44556799999999999998711 1 111123344431 11222211 27799999999
Q ss_pred HHCCCEEEEEeeccc
Q 006791 211 HGAGIEVILDVVYNH 225 (631)
Q Consensus 211 H~~Gi~VilDvV~NH 225 (631)
.+.||+|++-+-++.
T Consensus 75 ~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 75 DKYGMKVFVGLYFDP 89 (166)
T ss_pred HHcCCEEEEeCCCCc
Confidence 999999999988876
No 96
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=92.32 E-value=0.17 Score=50.94 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEeeccccc
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNHTN 227 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH~~ 227 (631)
.-|++|++.||+.||+||+||-+.-..
T Consensus 49 ~~~~ell~~Anklg~~vivDvnPsil~ 75 (360)
T COG3589 49 HRFKELLKEANKLGLRVIVDVNPSILK 75 (360)
T ss_pred HHHHHHHHHHHhcCcEEEEEcCHHHHh
Confidence 569999999999999999999876543
No 97
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=92.13 E-value=0.17 Score=55.66 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEeecc
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYN 224 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~N 224 (631)
++++++.+.|+++||++|.|+.+-
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpig 215 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIG 215 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEeccce
Confidence 478888999999999999999863
No 98
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=91.83 E-value=0.39 Score=50.50 Aligned_cols=77 Identities=16% Similarity=0.294 Sum_probs=51.1
Q ss_pred HHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 006791 204 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRH 283 (631)
Q Consensus 204 k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~ 283 (631)
++|+..||++|++|++..-+ + + -...+|..|+.+++++.-
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~----------~----~--------------------------~~l~~~~~R~~fi~siv~ 106 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDV----------P----L--------------------------EQISNPTYRTQWIQQKVE 106 (358)
T ss_pred HHHHHHHHHcCCEEEEECcc----------C----H--------------------------HHcCCHHHHHHHHHHHHH
Confidence 58889999999999974100 0 0 013468899999999999
Q ss_pred HHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHh
Q 006791 284 WVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 321 (631)
Q Consensus 284 W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~ 321 (631)
+++++|.||+-||--.-...+. ........++++++.
T Consensus 107 ~~~~~gfDGIdIDwE~p~~~~~-~d~~~~t~llkelr~ 143 (358)
T cd02875 107 LAKSQFMDGINIDIEQPITKGS-PEYYALTELVKETTK 143 (358)
T ss_pred HHHHhCCCeEEEcccCCCCCCc-chHHHHHHHHHHHHH
Confidence 9999999999999543221110 001123356777765
No 99
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=91.61 E-value=0.21 Score=50.45 Aligned_cols=62 Identities=27% Similarity=0.327 Sum_probs=41.6
Q ss_pred HHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCchHHHHHHHHHH
Q 006791 132 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR--YAAGGGGPLKASWEFKEMVKA 209 (631)
Q Consensus 132 gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~--yGt~~~~~~~~~~e~k~lV~~ 209 (631)
-..+.++.+|++|+++|=|.--.+. +. ..++. +.+ ...+.|+++|++
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~--------------------~~-----~~~~~~~~~~------~~~~~ld~~v~~ 70 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEA--------------------YQ-----EPNPGYNYDE------TYLARLDRIVDA 70 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTS--------------------TS-----TTSTTTSBTH------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHH--------------------hc-----CCCCCccccH------HHHHHHHHHHHH
Confidence 3445589999999999998554322 11 11111 111 235889999999
Q ss_pred HHHCCCEEEEEeecc
Q 006791 210 LHGAGIEVILDVVYN 224 (631)
Q Consensus 210 ~H~~Gi~VilDvV~N 224 (631)
|+++||+||+|+--.
T Consensus 71 a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 71 AQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHTT-EEEEEEEES
T ss_pred HHhCCCeEEEEeccC
Confidence 999999999987654
No 100
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=90.78 E-value=2.3 Score=46.26 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEeecccc
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNHT 226 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH~ 226 (631)
+++.++-.-|+++||.+|.|+.+.=.
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~va 235 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVGVA 235 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccceec
Confidence 35666667788899999999987543
No 101
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=90.71 E-value=0.3 Score=50.93 Aligned_cols=63 Identities=19% Similarity=0.149 Sum_probs=41.2
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
.++....+-|.-.+++|++.|+.. ++-. +. ++..-.++|++|+
T Consensus 11 ~~~~~~~~yi~~a~~~Gf~~iFTS-L~ip-----------------------------e~-------~~~~~~~~~~~l~ 53 (357)
T PF05913_consen 11 SSFEENKAYIEKAAKYGFKRIFTS-LHIP-----------------------------ED-------DPEDYLERLKELL 53 (357)
T ss_dssp S-HHHHHHHHHHHHCTTEEEEEEE-E---------------------------------------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEECC-CCcC-----------------------------CC-------CHHHHHHHHHHHH
Confidence 356677777888889999999864 2111 00 0111238899999
Q ss_pred HHHHHCCCEEEEEeeccccc
Q 006791 208 KALHGAGIEVILDVVYNHTN 227 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~~ 227 (631)
+.||+.||+||+||-+.-..
T Consensus 54 ~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 54 KLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp HHHHHCT-EEEEEE-CCHHH
T ss_pred HHHHHCCCEEEEECCHHHHH
Confidence 99999999999999875543
No 102
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=90.23 E-value=2.5 Score=43.79 Aligned_cols=124 Identities=20% Similarity=0.213 Sum_probs=73.3
Q ss_pred CHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCC
Q 006791 129 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINF-------------FSPMSRYAAGGGG 195 (631)
Q Consensus 129 ~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~-------------~~~d~~yGt~~~~ 195 (631)
+...|.+-||.+...++|.++|--.=.. .|......| ......| |.
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~-----------------~~rle~~~~P~lt~~ga~~~~~~~~~~~Y-T~--- 74 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQ-----------------GWRIEIKSWPKLTEIGGSTEVGGGPGGYY-TQ--- 74 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCC-----------------cceeeecCcccccccccccccCCCCCCcC-CH---
Confidence 5666777789999999999988432110 111111111 0111122 23
Q ss_pred CCchHHHHHHHHHHHHHCCCEEEEEee-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHH
Q 006791 196 PLKASWEFKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 274 (631)
Q Consensus 196 ~~~~~~e~k~lV~~~H~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~ 274 (631)
+|+++||+-|.++||.||-.+- +.|+.......|-+... +.. ...+ .........||..+|++.
T Consensus 75 -----~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~-~~~-~~~~--------~~~~~~~~~l~~~~~~t~ 139 (329)
T cd06568 75 -----EDYKDIVAYAAERHITVVPEIDMPGHTNAALAAYPELNCD-GKA-KPLY--------TGIEVGFSSLDVDKPTTY 139 (329)
T ss_pred -----HHHHHHHHHHHHcCCEEEEecCCcHHHHHHHHhChhhccC-CCC-Cccc--------cccCCCCcccCCCCHHHH
Confidence 9999999999999999999886 78876421112211110 000 0000 011111246899999999
Q ss_pred HHHHHHHHHHHHHc
Q 006791 275 ELILDSLRHWVVEY 288 (631)
Q Consensus 275 ~~i~~~~~~W~~e~ 288 (631)
+++.+.+.-.++-|
T Consensus 140 ~fl~~v~~E~~~~f 153 (329)
T cd06568 140 EFVDDVFRELAALT 153 (329)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999888544
No 103
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=90.20 E-value=2 Score=44.09 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEee-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHH
Q 006791 201 WEFKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 279 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~ 279 (631)
+|+++||+-|.++||+||-.+- +.|+.. +...+.......+ . ...+......||..+|++.+++.+
T Consensus 72 ~di~elv~yA~~rgI~viPEiD~PGH~~a------~~~~~p~l~~~~~-~------~~~~~~~~~~l~~~~~~t~~fl~~ 138 (303)
T cd02742 72 AQLKDIIEYAAARGIEVIPEIDMPGHSTA------FVKSFPKLLTECY-A------GLKLRDVFDPLDPTLPKGYDFLDD 138 (303)
T ss_pred HHHHHHHHHHHHcCCEEEEeccchHHHHH------HHHhCHHhccCcc-c------cCCCCCCCCccCCCCccHHHHHHH
Confidence 8999999999999999999986 799864 2222111100000 0 001111224689999999999999
Q ss_pred HHHHHHHHc
Q 006791 280 SLRHWVVEY 288 (631)
Q Consensus 280 ~~~~W~~e~ 288 (631)
.+.-+++-|
T Consensus 139 l~~e~~~lf 147 (303)
T cd02742 139 LFGEIAELF 147 (303)
T ss_pred HHHHHHHhC
Confidence 999999644
No 104
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=90.11 E-value=0.88 Score=47.18 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHH
Q 006791 202 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSL 281 (631)
Q Consensus 202 e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~ 281 (631)
+.++||+++|++|++||+-+.+-= .. +. . +.+.+.-.|+.||++|++..+..
T Consensus 65 dp~~mv~~L~~~G~klv~~i~P~i-~~------------g~---~------------~~~~~~~pDftnp~ar~wW~~~~ 116 (332)
T cd06601 65 NPKEMFDNLHNKGLKCSTNITPVI-SY------------GG---G------------LGSPGLYPDLGRPDVREWWGNQY 116 (332)
T ss_pred CHHHHHHHHHHCCCeEEEEecCce-ec------------Cc---c------------CCCCceeeCCCCHHHHHHHHHHH
Confidence 368999999999999998775421 10 00 0 00112235788999999988888
Q ss_pred HHHHHHcCccEEEEecc
Q 006791 282 RHWVVEYHVDGFRFDLA 298 (631)
Q Consensus 282 ~~W~~e~giDGfR~D~~ 298 (631)
+.+. +.|||||=+|..
T Consensus 117 ~~l~-~~Gv~~~W~Dmn 132 (332)
T cd06601 117 KYLF-DIGLEFVWQDMT 132 (332)
T ss_pred HHHH-hCCCceeecCCC
Confidence 8887 789999999953
No 105
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=89.53 E-value=2.4 Score=48.11 Aligned_cols=90 Identities=22% Similarity=0.332 Sum_probs=55.7
Q ss_pred HHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCc---cc-cCCCCCCCCCCCHHHHHHHH
Q 006791 203 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL---LN-YAGCGNTLNCNHPVVMELIL 278 (631)
Q Consensus 203 ~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~---~~-~~~~~~~ln~~~~~v~~~i~ 278 (631)
++.+|+.+|++|+++|+=+-++-... .. +..++.......+..+..+.. .+ +.+...-+|+.||.+.....
T Consensus 353 ~~~fv~~Lh~~G~kyvliidP~is~~----~~-y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~ 427 (805)
T KOG1065|consen 353 LKDFVDDLHARGFKYVLIIDPFISTN----SS-YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWL 427 (805)
T ss_pred hHHHHHHHHhCCCeEEEEeCCccccC----cc-chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHH
Confidence 99999999999999987555332111 11 111221111222333222222 11 12222345889999999999
Q ss_pred HHHHHHHHHcCccEEEEec
Q 006791 279 DSLRHWVVEYHVDGFRFDL 297 (631)
Q Consensus 279 ~~~~~W~~e~giDGfR~D~ 297 (631)
+.++..-++.++|||=+|+
T Consensus 428 ~~~~~fh~~vp~dg~wiDm 446 (805)
T KOG1065|consen 428 DELKRFHDEVPFDGFWIDM 446 (805)
T ss_pred HHHHhhcccCCccceEEEC
Confidence 9999888899999999996
No 106
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=89.26 E-value=2.6 Score=43.12 Aligned_cols=114 Identities=20% Similarity=0.186 Sum_probs=71.7
Q ss_pred CHHHHHhhchHHHHcCCceEEECCC--cccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 006791 129 SYLGLIQKIPHLLELGINAVELLPV--FEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEM 206 (631)
Q Consensus 129 ~~~gl~~~LdyLk~LGvt~I~L~Pi--~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~l 206 (631)
+...|.+.++.++.+|+|.++|==- |++. ..| .-++. ...| |. +|++++
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~-------~~p------~~~~~-------~~~y-T~--------~ei~ei 65 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYE-------GEP------EVGRM-------RGAY-TK--------EEIREI 65 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecC-------CCc------ccccC-------CCCc-CH--------HHHHHH
Confidence 4566777899999999999987321 1110 000 00110 1223 22 999999
Q ss_pred HHHHHHCCCEEEEEee-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 006791 207 VKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWV 285 (631)
Q Consensus 207 V~~~H~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~ 285 (631)
++-|.++||.||-.+- +.|+.. ++. . +.|-...+. ......||-.+|++.+++.+.+.-.+
T Consensus 66 ~~yA~~~gI~vIPeid~pGH~~~------~l~-~-----~~~~~l~~~------~~~~~~l~~~~~~t~~fi~~li~ev~ 127 (301)
T cd06565 66 DDYAAELGIEVIPLIQTLGHLEF------ILK-H-----PEFRHLREV------DDPPQTLCPGEPKTYDFIEEMIRQVL 127 (301)
T ss_pred HHHHHHcCCEEEecCCCHHHHHH------HHh-C-----ccccccccc------CCCCCccCCCChhHHHHHHHHHHHHH
Confidence 9999999999997765 788764 121 1 111000000 01124688999999999999999999
Q ss_pred HHcC
Q 006791 286 VEYH 289 (631)
Q Consensus 286 ~e~g 289 (631)
.-|.
T Consensus 128 ~~f~ 131 (301)
T cd06565 128 ELHP 131 (301)
T ss_pred HhCC
Confidence 6554
No 107
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=89.04 E-value=1.8 Score=44.67 Aligned_cols=61 Identities=31% Similarity=0.501 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHH
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 280 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~ 280 (631)
.++++-|++||++|++||+=+ +. ... .....++.-++.+.++
T Consensus 60 ~~~~~~i~~~q~~G~KVllSi-----GG--~~~-------------------------------~~~~~~~~~~~~fa~s 101 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISI-----GG--ANG-------------------------------HVDLNHTAQEDNFVDS 101 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEE-----eC--CCC-------------------------------ccccCCHHHHHHHHHH
Confidence 789999999999999999865 21 000 0012456778899999
Q ss_pred HHHHHHHcCccEEEEeccc
Q 006791 281 LRHWVVEYHVDGFRFDLAS 299 (631)
Q Consensus 281 ~~~W~~e~giDGfR~D~~~ 299 (631)
+.-+++++|+||+=||.-.
T Consensus 102 l~~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 102 IVAIIKEYGFDGLDIDLES 120 (312)
T ss_pred HHHHHHHhCCCeEEEeccc
Confidence 9999999999999999544
No 108
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=88.71 E-value=1.5 Score=43.59 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHH
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 280 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~ 280 (631)
.++..++++||++|++|++=|- ++... .+ . --..++..|+.++++
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sig-g~~~~---------~~--------------------~-----~~~~~~~~r~~fi~~ 90 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLA-GGSPP---------EF--------------------T-----AALNDPAKRKALVDK 90 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEc-CCCCC---------cc--------------------h-----hhhcCHHHHHHHHHH
Confidence 6789999999999999998542 22110 00 0 023568889999999
Q ss_pred HHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHhc
Q 006791 281 LRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD 322 (631)
Q Consensus 281 ~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~~ 322 (631)
+.-+++++|.||+-||.-..-.. ......++++++..
T Consensus 91 lv~~~~~~~~DGIdiDwE~~~~~-----~~~~~~fv~~Lr~~ 127 (253)
T cd06545 91 IINYVVSYNLDGIDVDLEGPDVT-----FGDYLVFIRALYAA 127 (253)
T ss_pred HHHHHHHhCCCceeEEeeccCcc-----HhHHHHHHHHHHHH
Confidence 99999999999999995332110 11234577777763
No 109
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=88.52 E-value=17 Score=44.41 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHhccccCCCeEeeccCCCC
Q 006791 269 NHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCR 338 (631)
Q Consensus 269 ~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~li~E~w~~~ 338 (631)
.+|.++++|.+..+.-.+ -.+|||+|.++.-+... +.-+|.+.+ .+.|+++++||-+..+
T Consensus 487 DsP~LW~~M~~Y~~~~Ak--iF~G~RiDNCHSTPlhV------aeylLd~AR--~vnPnLyV~AELFTGS 546 (1464)
T TIGR01531 487 DSPYLWQHMKEYTEMTAR--IFDGVRIDNCHSTPIHV------AEYLLDAAR--KYNPNLYVVAELFTGS 546 (1464)
T ss_pred CCHHHHHHHHHHHHHHHH--hhcceeeecccCCcHHH------HHHHHHHHh--hcCCCeEEEeeecCCc
Confidence 369999999999988886 67999999877543321 112344443 4899999999976543
No 110
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=88.17 E-value=3.4 Score=43.43 Aligned_cols=79 Identities=20% Similarity=0.117 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEee-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHH
Q 006791 201 WEFKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 279 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~ 279 (631)
+|+|++|+-|.++||+||-.+- +.|+.......|.+.... ....+ ..........||-.+|++.+++.+
T Consensus 86 ~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~---~~~~~-------~~~~~~~~~~L~~~~~~t~~f~~~ 155 (357)
T cd06563 86 EEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTG---GPGSV-------VSVQGVVSNVLCPGKPETYTFLED 155 (357)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCC---CCCcc-------ccccCcCCCccCCCChhHHHHHHH
Confidence 9999999999999999999986 789864211122111100 00000 000111234689999999999999
Q ss_pred HHHHHHHHcC
Q 006791 280 SLRHWVVEYH 289 (631)
Q Consensus 280 ~~~~W~~e~g 289 (631)
.+.-.++-|.
T Consensus 156 ll~E~~~lF~ 165 (357)
T cd06563 156 VLDEVAELFP 165 (357)
T ss_pred HHHHHHHhCC
Confidence 9999986554
No 111
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=87.92 E-value=3.7 Score=42.98 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEee-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHH
Q 006791 201 WEFKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 279 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~ 279 (631)
+|+|++|+-|.++||.||-.+- +.|+.......|.+. ......+ . .. ........||..+|++.+++.+
T Consensus 70 ~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p~l~----~~~~~~~--~---~~-~~~~~~~~L~~~~~~t~~fl~~ 139 (348)
T cd06562 70 EDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGYPELL----TGCYAVW--R---KY-CPEPPCGQLNPTNPKTYDFLKT 139 (348)
T ss_pred HHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhChhhh----CCCCccc--c---cc-ccCCCCccccCCChhHHHHHHH
Confidence 9999999999999999999986 799865222222111 1001100 0 00 0011234689999999999999
Q ss_pred HHHHHHHHcCc
Q 006791 280 SLRHWVVEYHV 290 (631)
Q Consensus 280 ~~~~W~~e~gi 290 (631)
++.-.++-|.-
T Consensus 140 vl~E~~~lF~~ 150 (348)
T cd06562 140 LFKEVSELFPD 150 (348)
T ss_pred HHHHHHHhcCC
Confidence 99999976653
No 112
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=87.73 E-value=2.5 Score=44.78 Aligned_cols=122 Identities=18% Similarity=0.153 Sum_probs=67.7
Q ss_pred HHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 006791 132 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 211 (631)
Q Consensus 132 gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H 211 (631)
.+.+.|.-+|++|||+|-|..+.-.. -+|.+ + ..|| +.|.++|+.|+
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~~~W~~-----lEP~e--G--------~ydF------------------~~lD~~l~~a~ 57 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGEFSWSW-----LEPEE--G--------QYDF------------------SWLDRVLDLAA 57 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-CCEHHH-----H-SBT--T--------B---------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEechhh-----ccCCC--C--------eeec------------------HHHHHHHHHHH
Confidence 45566899999999999997764220 01111 0 0122 67999999999
Q ss_pred HCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcC--
Q 006791 212 GAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYH-- 289 (631)
Q Consensus 212 ~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~g-- 289 (631)
++||+|||-+. .+..+ .|+.. . .+.--..+..|.... .|.....+..+|.+|+++...++..++.|+
T Consensus 58 ~~Gi~viL~~~-~~~~P-----~Wl~~--~--~Pe~~~~~~~g~~~~-~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~ 126 (374)
T PF02449_consen 58 KHGIKVILGTP-TAAPP-----AWLYD--K--YPEILPVDADGRRRG-FGSRQHYCPNSPAYREYARRFIRALAERYGDH 126 (374)
T ss_dssp CTT-EEEEEEC-TTTS------HHHHC--C--SGCCC-B-TTTSBEE-CCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCeEEEEec-ccccc-----cchhh--h--cccccccCCCCCcCc-cCCccccchhHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999775 22221 23321 0 011111122222221 222234567889999988888777766554
Q ss_pred --ccEEEEec
Q 006791 290 --VDGFRFDL 297 (631)
Q Consensus 290 --iDGfR~D~ 297 (631)
|-|+-+|.
T Consensus 127 p~vi~~~i~N 136 (374)
T PF02449_consen 127 PAVIGWQIDN 136 (374)
T ss_dssp TTEEEEEECC
T ss_pred ceEEEEEecc
Confidence 66888774
No 113
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.55 E-value=0.56 Score=54.21 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=29.8
Q ss_pred CCCEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeecccccee
Q 006791 13 TGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLV 61 (631)
Q Consensus 13 ~g~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~ 61 (631)
..++|+++|| ++ +|..|+|+|.. . |.. ..+.||||+..
T Consensus 61 ~~G~w~~~ip-~~-~g~~YKy~i~~-~----g~~----~~k~DPyaf~~ 98 (726)
T PRK05402 61 PRGLFAGVLP-RK-GPFDYRLRVTW-G----GGE----QLIDDPYRFGP 98 (726)
T ss_pred CCceEEEEec-CC-CCCCeEEEEEe-C----Cce----eEeccccccCC
Confidence 3459999999 75 89999999986 4 322 46899999953
No 114
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=87.26 E-value=0.83 Score=50.27 Aligned_cols=65 Identities=26% Similarity=0.280 Sum_probs=36.1
Q ss_pred ecCcccCCCCCCCCCCCCcCH-HHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 006791 110 NVRAFTGDESSGLDPEIRGSY-LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 188 (631)
Q Consensus 110 ~v~~F~~~~~~~~~~~~~G~~-~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~ 188 (631)
|+-+.....+-|+ ||| ..+.+-++.+++.|+..++|+|++... + ..++.|.+.+=|+.+|-
T Consensus 2 ~l~SLrs~~~~GI-----GDfg~dl~~~~d~~~~~G~~i~qllpl~pt~---------~----~~~sPY~p~S~~alNPl 63 (496)
T PF02446_consen 2 PLYSLRSPRSWGI-----GDFGDDLYQFIDWAAEAGQSIWQLLPLNPTG---------P----GNSSPYSPSSRFALNPL 63 (496)
T ss_dssp -GGGS-SSS--SS-------SSHHHHHHHHHHHHCT--EEE----S-B----------T----TCTTTTSBS-SSS--GG
T ss_pred CCCcCCCCCCCce-----ecHHHHHHHHHHHHHHcCCCeeccccccCCC---------C----CCCCCCCCCCCCcCChH
Confidence 3334433334456 999 899999999999999999999999872 1 24558999999999988
Q ss_pred CCCC
Q 006791 189 YAAG 192 (631)
Q Consensus 189 yGt~ 192 (631)
|=+.
T Consensus 64 yI~l 67 (496)
T PF02446_consen 64 YIDL 67 (496)
T ss_dssp GS-S
T ss_pred HcCH
Confidence 8554
No 115
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=87.14 E-value=0.83 Score=36.66 Aligned_cols=34 Identities=32% Similarity=0.646 Sum_probs=24.1
Q ss_pred CEEEEEEcCCCCCCcEEEEEEEcCCCCCCCcccCCCceeecccccee
Q 006791 15 DIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLV 61 (631)
Q Consensus 15 ~vw~~~i~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPya~~~ 61 (631)
++|+++++ ++...+.|+|.|++.. .+.||.+...
T Consensus 36 G~w~~~~~-l~~G~y~Ykf~vdg~~------------~~~DP~~~~~ 69 (82)
T cd02861 36 GLWVVTVE-LRPGRYEYKFVVDGEW------------VIVDPNAAAY 69 (82)
T ss_pred CcEEEEEe-CCCCcEEEEEEECCEE------------eeCCCCCCce
Confidence 59999997 5533348999997521 3589988764
No 116
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=86.00 E-value=1.2 Score=46.82 Aligned_cols=140 Identities=16% Similarity=0.210 Sum_probs=73.7
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWG-YSTINFFSPMSRYAAGGGGPLKASWEFKEM 206 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~G-Y~~~d~~~~d~~yGt~~~~~~~~~~e~k~l 206 (631)
=+...|.+-|+.+..+++|+++|=---.. .....-..-|. ....| |.... . +..| |. +|+++|
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~D~~-~~~~~~~~~p~---l~~~ga~~~~~--~-~~~y-T~--------~di~~l 78 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLSDDQ-GFRLESKSYPE---LTEKGAYRPSD--A-GGYY-TK--------EDIREL 78 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEESST-CB-BEBSTSTH---HHHTTTESTTC--T-ESEB-EH--------HHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCC-CCccccCCCcc---ccccCcccccc--c-cccC-CH--------HHHHHH
Confidence 35667777899999999999987432110 00000000000 00001 11111 1 1122 23 999999
Q ss_pred HHHHHHCCCEEEEEee-cccccCCCCCCCcccccCCCC------CCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHH
Q 006791 207 VKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGID------NKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 279 (631)
Q Consensus 207 V~~~H~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~------~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~ 279 (631)
|+-|+++||+||-.+- +.|+.. ++....... +..+..... .......||..+|++.+++.+
T Consensus 79 v~yA~~~gI~VIPeid~PGH~~~------~l~~~p~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~t~~~~~~ 146 (351)
T PF00728_consen 79 VAYAKERGIEVIPEIDTPGHAEA------WLKAYPELGCSAWPEDKSWPNSTC------WYPDNGVLDPSNPETYEFLKD 146 (351)
T ss_dssp HHHHHHTT-EEEEEEEESSS-HH------HHHHHHHHCCCHTTCSSSCEEEET------TSEEEEEE-TTSHHHHHHHHH
T ss_pred HHHHHHcCCceeeeccCchHHHH------HHHhCchhhccccccccccccccc------cCCCcccCCCCcHHHHHHHHH
Confidence 9999999999999986 799875 221111000 011111100 000112588999999999999
Q ss_pred HHHHHHHHcCccEEEE
Q 006791 280 SLRHWVVEYHVDGFRF 295 (631)
Q Consensus 280 ~~~~W~~e~giDGfR~ 295 (631)
.+.-.+.-|.-.-|.+
T Consensus 147 l~~e~~~~f~~~~iHi 162 (351)
T PF00728_consen 147 LLDEVADLFPSKYIHI 162 (351)
T ss_dssp HHHHHHHHHTSSEEEE
T ss_pred HHHHHHhhCCCCeEEe
Confidence 9999997777444444
No 117
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=85.67 E-value=2 Score=41.78 Aligned_cols=54 Identities=26% Similarity=0.365 Sum_probs=39.3
Q ss_pred CcCHHHHHh---h----chHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCch
Q 006791 127 RGSYLGLIQ---K----IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKA 199 (631)
Q Consensus 127 ~G~~~gl~~---~----LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~ 199 (631)
+|||..+.- + |.++|+|||++|+++- |.-.. .
T Consensus 60 GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~-----------------------G~~~i---------~--------- 98 (237)
T TIGR03849 60 GGTLFEIAHSKGKFDEYLNECDELGFEAVEISD-----------------------GSMEI---------S--------- 98 (237)
T ss_pred CccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcC-----------------------CccCC---------C---------
Confidence 477755442 2 5599999999999864 11111 1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEe
Q 006791 200 SWEFKEMVKALHGAGIEVILDV 221 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilDv 221 (631)
.++..++|+.++++|++|+-.+
T Consensus 99 ~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 99 LEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHHHHHhCCCeEeccc
Confidence 1889999999999999999664
No 118
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=85.47 E-value=9.1 Score=39.33 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEee-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCC-CCCCCCCCCHHHHHHHH
Q 006791 201 WEFKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAG-CGNTLNCNHPVVMELIL 278 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~-~~~~ln~~~~~v~~~i~ 278 (631)
+|++++|+-|.++||+||-.+- +.|+.. |...+....... .........+ ..+.||..+|++.+++.
T Consensus 68 ~di~elv~yA~~rgI~vIPEId~PGH~~a------~~~~ypel~~~~-----~~~~~~~~~~~~~~~l~~~~p~t~~f~~ 136 (311)
T cd06570 68 EQIREVVAYARDRGIRVVPEIDVPGHASA------IAVAYPELASGP-----GPYVIERGWGVFEPLLDPTNEETYTFLD 136 (311)
T ss_pred HHHHHHHHHHHHcCCEEEEeecCccchHH------HHHhCHHhccCC-----CccccccccccCCCccCCCChhHHHHHH
Confidence 8999999999999999999886 789764 222221110000 0000000111 12468999999999999
Q ss_pred HHHHHHHHHcC
Q 006791 279 DSLRHWVVEYH 289 (631)
Q Consensus 279 ~~~~~W~~e~g 289 (631)
+.+.-++.-|.
T Consensus 137 ~l~~E~~~lF~ 147 (311)
T cd06570 137 NLFGEMAELFP 147 (311)
T ss_pred HHHHHHHHhCC
Confidence 99999986553
No 119
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=83.04 E-value=2.2 Score=43.95 Aligned_cols=57 Identities=28% Similarity=0.394 Sum_probs=37.4
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
+-+..||+.|+|+|-|=--.. | |+ .-+.+. +...+|.++++++|
T Consensus 28 d~~~ilk~~G~N~vRlRvwv~-----------P---------~~--------~g~~~~--------~~~~~~akrak~~G 71 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVWVN-----------P---------YD--------GGYNDL--------EDVIALAKRAKAAG 71 (332)
T ss_dssp -HHHHHHHTT--EEEEEE-SS---------------------TT--------TTTTSH--------HHHHHHHHHHHHTT
T ss_pred CHHHHHHhcCCCeEEEEeccC-----------C---------cc--------cccCCH--------HHHHHHHHHHHHCC
Confidence 458999999999998754222 2 11 223333 89999999999999
Q ss_pred CEEEEEeeccccc
Q 006791 215 IEVILDVVYNHTN 227 (631)
Q Consensus 215 i~VilDvV~NH~~ 227 (631)
|+|+||+=|..+-
T Consensus 72 m~vlldfHYSD~W 84 (332)
T PF07745_consen 72 MKVLLDFHYSDFW 84 (332)
T ss_dssp -EEEEEE-SSSS-
T ss_pred CeEEEeecccCCC
Confidence 9999999876643
No 120
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=82.90 E-value=7.9 Score=38.80 Aligned_cols=94 Identities=20% Similarity=0.296 Sum_probs=60.4
Q ss_pred cCHHHHHhhchHHHHcCC--ceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCchHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFK 204 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~-~yGt~~~~~~~~~~e~k 204 (631)
.+-..+.+.++.+++.|| ++|+|-.=+.. . ...++ +..++ +|. +.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~----------~----~~~f~------~~~d~~~Fp-----------dp~ 69 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTD----------G----YGDFT------FDWDAGKFP-----------NPK 69 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECccccc----------C----Cceee------eecChhhCC-----------CHH
Confidence 566778888888888665 46776543332 0 11111 12222 342 478
Q ss_pred HHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHH
Q 006791 205 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHW 284 (631)
Q Consensus 205 ~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W 284 (631)
+||+.+|++|++|++-+.+. |++...+.++..
T Consensus 70 ~~i~~l~~~g~~~~~~~~P~------------------------------------------------v~~w~~~~~~~~ 101 (265)
T cd06589 70 SMIDELHDNGVKLVLWIDPY------------------------------------------------IREWWAEVVKKL 101 (265)
T ss_pred HHHHHHHHCCCEEEEEeChh------------------------------------------------HHHHHHHHHHHh
Confidence 99999999999999965431 255555555555
Q ss_pred HHHcCccEEEEecccc
Q 006791 285 VVEYHVDGFRFDLASV 300 (631)
Q Consensus 285 ~~e~giDGfR~D~~~~ 300 (631)
+.+.|||||=+|....
T Consensus 102 ~~~~Gvdg~w~D~~E~ 117 (265)
T cd06589 102 LVSLGVDGFWTDMGEP 117 (265)
T ss_pred hccCCCCEEeccCCCC
Confidence 4589999999996543
No 121
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=80.04 E-value=3.6 Score=32.42 Aligned_cols=28 Identities=21% Similarity=0.531 Sum_probs=22.1
Q ss_pred cCCCCEEEEEEcCCCC-CCcEEEEEEEcCC
Q 006791 11 NKTGDIWHICIEDLPR-SEVLYGYRVDGPR 39 (631)
Q Consensus 11 ~~~g~vw~~~i~~~~~-~g~~Y~y~i~~~~ 39 (631)
...+++|++.++. .. .+..|+|++++..
T Consensus 35 ~~~~g~w~~~v~~-~~~~~~~Y~~~v~~~~ 63 (83)
T cd02688 35 KVEDGYWEVELPL-PSPGKYQYKYVLDGGK 63 (83)
T ss_pred ECCCceEEEEEcC-CCCCCeEEEEEEeCCC
Confidence 3445699999987 45 7899999998754
No 122
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=79.14 E-value=2.4 Score=42.84 Aligned_cols=50 Identities=36% Similarity=0.377 Sum_probs=30.6
Q ss_pred HhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHC
Q 006791 134 IQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGA 213 (631)
Q Consensus 134 ~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~ 213 (631)
...+++||+||+|+|-+--|-.. --= +++. +++.++
T Consensus 56 ~rDi~~l~~LgiNtIRVY~vdp~--------------------------------~nH---------d~CM---~~~~~a 91 (314)
T PF03198_consen 56 KRDIPLLKELGINTIRVYSVDPS--------------------------------KNH---------DECM---SAFADA 91 (314)
T ss_dssp HHHHHHHHHHT-SEEEES---TT--------------------------------S-----------HHHH---HHHHHT
T ss_pred HHhHHHHHHcCCCEEEEEEeCCC--------------------------------CCH---------HHHH---HHHHhC
Confidence 33489999999999997655332 100 4444 446679
Q ss_pred CCEEEEEeeccccc
Q 006791 214 GIEVILDVVYNHTN 227 (631)
Q Consensus 214 Gi~VilDvV~NH~~ 227 (631)
||-||+|+---+.+
T Consensus 92 GIYvi~Dl~~p~~s 105 (314)
T PF03198_consen 92 GIYVILDLNTPNGS 105 (314)
T ss_dssp T-EEEEES-BTTBS
T ss_pred CCEEEEecCCCCcc
Confidence 99999999866544
No 123
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=78.54 E-value=3 Score=40.86 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=38.6
Q ss_pred CcCHHHHHh-------hchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCch
Q 006791 127 RGSYLGLIQ-------KIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKA 199 (631)
Q Consensus 127 ~G~~~gl~~-------~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~ 199 (631)
+|||-.+.- -|.++|+|||++|+++= |.-...
T Consensus 73 GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSd-----------------------Gti~l~------------------ 111 (244)
T PF02679_consen 73 GGTLFEVAYQQGKFDEYLEECKELGFDAIEISD-----------------------GTIDLP------------------ 111 (244)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE-------------------------SSS---------------------
T ss_pred CcHHHHHHHhcChHHHHHHHHHHcCCCEEEecC-----------------------CceeCC------------------
Confidence 488766553 27899999999999864 221111
Q ss_pred HHHHHHHHHHHHHCCCEEEEEee
Q 006791 200 SWEFKEMVKALHGAGIEVILDVV 222 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilDvV 222 (631)
.++..++|+.+.++|++|+-.|=
T Consensus 112 ~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 112 EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHHHHHCCCEEeeccc
Confidence 18899999999999999998775
No 124
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=78.53 E-value=7.8 Score=39.68 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCC-CCC--CC---CChHHHHHHHh--ccccCCCeEee
Q 006791 265 TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGT-DGS--PL---NAPPLIRAIAK--DAILSRCKIIA 332 (631)
Q Consensus 265 ~ln~~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~-~~~--~~---~~~~~l~~i~~--~~~~~~~~li~ 332 (631)
.+++.+|+.++.|.+-+...+ +.|+|||-+|.+.....-. .+. .. ....+++.|+. +...|++.+|.
T Consensus 137 ~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~ 211 (315)
T TIGR01370 137 DVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIP 211 (315)
T ss_pred eEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 578889999999998887776 7899999999766543211 011 11 11245666633 23467777773
No 125
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=77.71 E-value=4.1 Score=46.50 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=50.6
Q ss_pred EecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 006791 109 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 188 (631)
Q Consensus 109 i~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~ 188 (631)
+|+-+.....+-|+ |||..+.+-+|.+++.|.+.|+|+|+...... ++. ..+..|.+.+=|+.+|-
T Consensus 66 l~l~SLrS~~s~GI-----GDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~------~~~---~dSSPYsp~S~fAlNPl 131 (745)
T PLN03236 66 LPVFSLRSAESVGA-----GDFGDLEALVDFAAEAGMSVVQLLPVNDTCVH------GTF---WDSYPYSSLSVHALHPL 131 (745)
T ss_pred eccccCCCCCCCCc-----ccHHHHHHHHHHHHHcCCCEEEECCCCcCCCC------CCC---CCCCCcCcccccccChH
Confidence 44544444444566 99999888899999999999999999886210 000 12237999999999988
Q ss_pred CCCC
Q 006791 189 YAAG 192 (631)
Q Consensus 189 yGt~ 192 (631)
|=+.
T Consensus 132 yIdl 135 (745)
T PLN03236 132 YLKL 135 (745)
T ss_pred HcCH
Confidence 8764
No 126
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=77.52 E-value=5.2 Score=41.21 Aligned_cols=86 Identities=17% Similarity=0.287 Sum_probs=53.7
Q ss_pred HHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHH
Q 006791 203 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLR 282 (631)
Q Consensus 203 ~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~ 282 (631)
..++++.||++|++|++=|- +.... + |. ...+ .--.+++..|+.+++++.
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~~----~-----~~----~~~~----------------~~~l~~~~~r~~fi~~iv 96 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTNG----N-----FD----SELA----------------HAVLSNPEARQRLINNIL 96 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCCC----C-----CC----HHHH----------------HHHhcCHHHHHHHHHHHH
Confidence 45789999999999997653 22110 0 00 0000 011246888999999999
Q ss_pred HHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHhc
Q 006791 283 HWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD 322 (631)
Q Consensus 283 ~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~~ 322 (631)
-+++++|.||+-||--..-..+ ......++++++..
T Consensus 97 ~~l~~~~~DGidiDwE~~~~~d----~~~~~~fl~~lr~~ 132 (313)
T cd02874 97 ALAKKYGYDGVNIDFENVPPED----REAYTQFLRELSDR 132 (313)
T ss_pred HHHHHhCCCcEEEecccCCHHH----HHHHHHHHHHHHHH
Confidence 9999999999999954321111 11234577777763
No 127
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=77.20 E-value=38 Score=33.95 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=66.9
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH-HHHHHC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV-KALHGA 213 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV-~~~H~~ 213 (631)
.-|+.|++||+|+|+|-++.+.+. + |=... -|=|+.+.--. -+=|-+.+ +...+.
T Consensus 21 ~l~~ri~~~~~~tV~Lqaf~d~~g---------------d-g~~~~-~YFpnr~lpvr-------aDlf~rvawql~tr~ 76 (294)
T PF14883_consen 21 KLIQRIKDMGINTVYLQAFADPDG---------------D-GNADA-VYFPNRHLPVR-------ADLFNRVAWQLRTRA 76 (294)
T ss_pred HHHHHHHHcCCCEEEEEeeeCCCC---------------C-Cceee-EEcCCCCCchH-------HHHHHHHHHHHhhhh
Confidence 347889999999999999876411 0 21111 12223333222 24466666 455599
Q ss_pred CCEEEEEeecccccCCCCCCCccc--ccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCcc
Q 006791 214 GIEVILDVVYNHTNEADDANPYTT--SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVD 291 (631)
Q Consensus 214 Gi~VilDvV~NH~~~~~~~~~~~~--~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giD 291 (631)
|++|+.=+..=-+.-. ..+... .....++..| ..|.--+|++|+.|.+...-....-.||
T Consensus 77 ~v~VyAWMPvlaf~lp--~~~~~~~~~~~~~~~~~y----------------~RLSPf~p~~r~~I~~IYeDLA~y~~fd 138 (294)
T PF14883_consen 77 GVKVYAWMPVLAFDLP--KVKRADEVRTDRPDPDGY----------------RRLSPFDPEARQIIKEIYEDLARYSKFD 138 (294)
T ss_pred CCEEEEeeehhhccCC--CcchhhhccccCCCCCCc----------------eecCCCCHHHHHHHHHHHHHHHhhCCCC
Confidence 9999876653111000 000000 0000011112 2344457999999999999988656999
Q ss_pred EEEE
Q 006791 292 GFRF 295 (631)
Q Consensus 292 GfR~ 295 (631)
|+=|
T Consensus 139 GILF 142 (294)
T PF14883_consen 139 GILF 142 (294)
T ss_pred eEEE
Confidence 9999
No 128
>PLN02950 4-alpha-glucanotransferase
Probab=76.68 E-value=6 Score=46.69 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=44.2
Q ss_pred CcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006791 127 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAG 192 (631)
Q Consensus 127 ~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~ 192 (631)
-|||.++.+-+|.+++.|.+.|+|+|+.+..... . ...+..|.+.+=|+.+|-|=+.
T Consensus 279 IGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~------~---~~~SsPYs~~S~falNPlyI~l 335 (909)
T PLN02950 279 VGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHG------M---WWDSYPYSSLSVFALHPLYLRV 335 (909)
T ss_pred eeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCC------C---CCCCCCcCcccccccChhhcCH
Confidence 3999999999999999999999999998752100 0 0122379999999999988764
No 129
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=76.07 E-value=7.6 Score=40.64 Aligned_cols=119 Identities=18% Similarity=0.086 Sum_probs=63.6
Q ss_pred chHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCE
Q 006791 137 IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIE 216 (631)
Q Consensus 137 LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~ 216 (631)
++-+|+.|+.-|-|+--+.-+ ..-|.=..++|.+++..++. +=+++|+++|+++||+
T Consensus 97 ~~~ak~aGakY~VlTakHHDG--------------F~LW~S~~t~~~v~~~~~kr---------Div~El~~A~rk~Glk 153 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHDG--------------FCLWPSKYTDYNVVNSGPKR---------DIVGELADACRKYGLK 153 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT----------------BSS--TT-SSBGGGGGGTS----------HHHHHHHHHHHTT-E
T ss_pred HHHHHHcCCCEEEeehhhcCc--------------cccCCCCCCcccccCCCCCC---------CHHHHHHHHHHHcCCe
Confidence 677899999999877654320 12333344556666643433 7799999999999999
Q ss_pred EEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCC-CHHHHHHHHHHHHHHHHHcCccEEEE
Q 006791 217 VILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCN-HPVVMELILDSLRHWVVEYHVDGFRF 295 (631)
Q Consensus 217 VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~-~~~v~~~i~~~~~~W~~e~giDGfR~ 295 (631)
+.+ |-|... -.+|.. . .... .+..+ ..+..-. ...+.+++..-++-.+..|.+|.+=|
T Consensus 154 ~G~---Y~S~~d--w~~~~~----~--------~~~~---~~~~~-~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWf 212 (346)
T PF01120_consen 154 FGL---YYSPWD--WHHPDY----P--------PDEE---GDENG-PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWF 212 (346)
T ss_dssp EEE---EEESSS--CCCTTT----T--------SSCH---CHHCC---HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEE
T ss_pred EEE---EecchH--hcCccc----C--------CCcc---CCccc-ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEe
Confidence 998 322221 011110 0 0000 00000 0000000 11245577788888888999999999
Q ss_pred eccc
Q 006791 296 DLAS 299 (631)
Q Consensus 296 D~~~ 299 (631)
|...
T Consensus 213 Dg~~ 216 (346)
T PF01120_consen 213 DGGW 216 (346)
T ss_dssp ESTT
T ss_pred cCCC
Confidence 9653
No 130
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=75.86 E-value=3.3 Score=42.76 Aligned_cols=60 Identities=15% Similarity=0.296 Sum_probs=36.5
Q ss_pred HHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 006791 133 LIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 212 (631)
Q Consensus 133 l~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~ 212 (631)
..+.|..+|++|+|+|..-=.+...+ +.+ + ..|| ... .+|.+|++.|++
T Consensus 26 W~~~l~k~ka~G~n~v~~yv~W~~he------~~~-----g-----~~df-------~g~--------~dl~~f~~~a~~ 74 (319)
T PF01301_consen 26 WRDRLQKMKAAGLNTVSTYVPWNLHE------PEE-----G-----QFDF-------TGN--------RDLDRFLDLAQE 74 (319)
T ss_dssp HHHHHHHHHHTT-SEEEEE--HHHHS------SBT-----T-----B----------SGG--------G-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCcceEEEeccccccC------CCC-----C-----cccc-------cch--------hhHHHHHHHHHH
Confidence 34668899999999999743333311 111 0 1122 222 789999999999
Q ss_pred CCCEEEEEeec
Q 006791 213 AGIEVILDVVY 223 (631)
Q Consensus 213 ~Gi~VilDvV~ 223 (631)
+||.|||-.=+
T Consensus 75 ~gl~vilrpGp 85 (319)
T PF01301_consen 75 NGLYVILRPGP 85 (319)
T ss_dssp TT-EEEEEEES
T ss_pred cCcEEEecccc
Confidence 99999998654
No 131
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=75.63 E-value=15 Score=39.79 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEee-cccccCCCCC----CCcccccCCCC--CCcCeeeCCC--CCccccCCC-CCCCCCC
Q 006791 200 SWEFKEMVKALHGAGIEVILDVV-YNHTNEADDA----NPYTTSFRGID--NKVYYMVDGT--GQLLNYAGC-GNTLNCN 269 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilDvV-~NH~~~~~~~----~~~~~~~~~~~--~~~yy~~~~~--~~~~~~~~~-~~~ln~~ 269 (631)
.+|+|+||+-|+++||.||-.+- +.|+...-.. -|-+... +.. ...|...++. ..+....++ ...||-.
T Consensus 96 ~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~-g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~ 174 (445)
T cd06569 96 RADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAA-GKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPC 174 (445)
T ss_pred HHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhcc-CCccccccccccCcccccccccccccccccccCC
Confidence 39999999999999999999886 7897641100 0100000 000 0011111111 111111111 2468889
Q ss_pred CHHHHHHHHHHHHHHHH
Q 006791 270 HPVVMELILDSLRHWVV 286 (631)
Q Consensus 270 ~~~v~~~i~~~~~~W~~ 286 (631)
+|.+.+++.+.+.-.+.
T Consensus 175 ~~~ty~fl~~vl~Ev~~ 191 (445)
T cd06569 175 MPSTYRFVDKVIDEIAR 191 (445)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999988884
No 132
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=75.12 E-value=5.4 Score=41.48 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=41.2
Q ss_pred HHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 006791 204 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRH 283 (631)
Q Consensus 204 k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~ 283 (631)
...+++||++|++|+-=+.+...+. ..++..+- -.++..+..+++-|.-
T Consensus 49 ~~~idaAHknGV~Vlgti~~e~~~~----~~~~~~lL---------------------------~~~~~~~~~~a~kLv~ 97 (339)
T cd06547 49 ADWINAAHRNGVPVLGTFIFEWTGQ----VEWLEDFL---------------------------KKDEDGSFPVADKLVE 97 (339)
T ss_pred cHHHHHHHhcCCeEEEEEEecCCCc----hHHHHHHh---------------------------ccCcccchHHHHHHHH
Confidence 3467899999999998665543211 11111110 0113344556666677
Q ss_pred HHHHcCccEEEEeccccc
Q 006791 284 WVVEYHVDGFRFDLASVL 301 (631)
Q Consensus 284 W~~e~giDGfR~D~~~~l 301 (631)
.++.||+||+=+|.-..+
T Consensus 98 lak~yGfDGw~iN~E~~~ 115 (339)
T cd06547 98 VAKYYGFDGWLINIETEL 115 (339)
T ss_pred HHHHhCCCceEeeeeccC
Confidence 778899999999965544
No 133
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=73.48 E-value=7.4 Score=44.52 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=38.4
Q ss_pred ceEEEEec-CcccCCCCCCCCCCCCcCHHHHHhhchHHH--HcCCceEE-ECCCcccchhhhhhcCCCCCCCCCCCCCCC
Q 006791 104 LVIYEMNV-RAFTGDESSGLDPEIRGSYLGLIQKIPHLL--ELGINAVE-LLPVFEFDEMEFQRRRNPRDHMVNTWGYST 179 (631)
Q Consensus 104 ~iiYei~v-~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk--~LGvt~I~-L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~ 179 (631)
+-||-+.- +++..++= |++..+++-+.-.. -+|++-|+ +.|.-.. .+..|.|
T Consensus 148 ~qlySLrs~~~~GIGDf--------gdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~----------------~~SPYsp 203 (695)
T PRK11052 148 VQLYTLRSEHNWGIGDF--------GDLKQMLEDVAKRGGDFIGLNPIHALYPANPE----------------SASPYSP 203 (695)
T ss_pred eccccCCCCCCCCeecH--------HHHHHHHHHHHHcCCCEEEECCCCcCCCCCCC----------------CCCCccc
Confidence 35677754 23333332 67777777653211 23466666 5564332 2337999
Q ss_pred CCCCCCCCCCCCC
Q 006791 180 INFFSPMSRYAAG 192 (631)
Q Consensus 180 ~d~~~~d~~yGt~ 192 (631)
.+=++.+|-|=+.
T Consensus 204 ~Sr~alNPlyI~~ 216 (695)
T PRK11052 204 SSRRWLNVIYIDV 216 (695)
T ss_pred ccccccChHHcCH
Confidence 9999999888764
No 134
>TIGR03356 BGL beta-galactosidase.
Probab=70.69 E-value=25 Score=37.98 Aligned_cols=100 Identities=17% Similarity=0.127 Sum_probs=63.4
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
.-|.-..+-|+-||+||++++-+.=-+.. ..| ++ -|.. -...++-.+++|
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsr--------------------i~p------~g-~~~~---n~~~~~~y~~~i 100 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPR--------------------IFP------EG-TGPV---NPKGLDFYDRLV 100 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhh--------------------ccc------CC-CCCc---CHHHHHHHHHHH
Confidence 45777788899999999999986432221 011 10 0110 012347799999
Q ss_pred HHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 006791 208 KALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVE 287 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e 287 (631)
++|.++||++|+++. |.. .|. +.. + -.| +.++++.+.+.+.++.-+++
T Consensus 101 ~~l~~~gi~pivtL~--Hfd-----~P~-----------~l~-~-------~gG------w~~~~~~~~f~~ya~~~~~~ 148 (427)
T TIGR03356 101 DELLEAGIEPFVTLY--HWD-----LPQ-----------ALE-D-------RGG------WLNRDTAEWFAEYAAVVAER 148 (427)
T ss_pred HHHHHcCCeeEEeec--cCC-----ccH-----------HHH-h-------cCC------CCChHHHHHHHHHHHHHHHH
Confidence 999999999999986 532 221 110 0 011 24577788888888888877
Q ss_pred cC
Q 006791 288 YH 289 (631)
Q Consensus 288 ~g 289 (631)
||
T Consensus 149 ~~ 150 (427)
T TIGR03356 149 LG 150 (427)
T ss_pred hC
Confidence 76
No 135
>PLN02635 disproportionating enzyme
Probab=69.67 E-value=23 Score=39.18 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=16.7
Q ss_pred CCcceeeeeccCCCchhhhh
Q 006791 395 PYHSINFIIAHDGFTLYDLV 414 (631)
Q Consensus 395 ~~~~~nf~~~HD~~~l~d~~ 414 (631)
+..++.|+.+||+.|+....
T Consensus 412 ~~~~v~ytgTHD~~Tl~GW~ 431 (538)
T PLN02635 412 EENQVVYPGTHDNDTVVGWW 431 (538)
T ss_pred cccceeeecCCCcccHHHHH
Confidence 45789999999999987655
No 136
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=68.88 E-value=8.4 Score=41.32 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=37.9
Q ss_pred HhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 006791 134 IQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFS-PMSRYAAGGGGPLKASWEFKEMVKALHG 212 (631)
Q Consensus 134 ~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~-~d~~yGt~~~~~~~~~~e~k~lV~~~H~ 212 (631)
.+-+.++|+.|+|+|-| |+. |.....+. .+|.+=.. ....=+.+.|+.|.+
T Consensus 76 ~~~~~~ik~~G~n~VRi-Pi~----------------------~~~~~~~~~~~p~~~~~-----~~~~~ld~~I~~a~~ 127 (407)
T COG2730 76 EEDFDQIKSAGFNAVRI-PIG----------------------YWALQATDGDNPYLIGL-----TQLKILDEAINWAKK 127 (407)
T ss_pred hhHHHHHHHcCCcEEEc-ccc----------------------hhhhhccCCCCCCeecc-----hHHHHHHHHHHHHHh
Confidence 44589999999999997 432 11110000 33333311 001246777999999
Q ss_pred CCCEEEEEee
Q 006791 213 AGIEVILDVV 222 (631)
Q Consensus 213 ~Gi~VilDvV 222 (631)
.||+|++|+.
T Consensus 128 ~gi~V~iD~H 137 (407)
T COG2730 128 LGIYVLIDLH 137 (407)
T ss_pred cCeeEEEEec
Confidence 9999999973
No 137
>PTZ00445 p36-lilke protein; Provisional
Probab=67.32 E-value=13 Score=35.43 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=39.0
Q ss_pred HHHHhh-chHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 006791 131 LGLIQK-IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 209 (631)
Q Consensus 131 ~gl~~~-LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~ 209 (631)
...+++ .+.|++.||.+|-+ +++.-=....+| ||.-.+ +-+..+++.. ..+|+.++++
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~----D~DnTlI~~Hsg---------G~~~~~--~~~~~~~~~~------tpefk~~~~~ 86 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIAS----DFDLTMITKHSG---------GYIDPD--NDDIRVLTSV------TPDFKILGKR 86 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEe----cchhhhhhhhcc---------cccCCC--cchhhhhccC------CHHHHHHHHH
Confidence 334444 57899999999863 221100000011 444332 2223343321 1789999999
Q ss_pred HHHCCCEEEE
Q 006791 210 LHGAGIEVIL 219 (631)
Q Consensus 210 ~H~~Gi~Vil 219 (631)
+.++||+|++
T Consensus 87 l~~~~I~v~V 96 (219)
T PTZ00445 87 LKNSNIKISV 96 (219)
T ss_pred HHHCCCeEEE
Confidence 9999999974
No 138
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=66.83 E-value=25 Score=33.45 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHC--CCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHH
Q 006791 201 WEFKEMVKALHGA--GIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL 278 (631)
Q Consensus 201 ~e~k~lV~~~H~~--Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~ 278 (631)
+.....++++|++ |++|++=+--.... . .+ --..++..|+.++
T Consensus 49 ~~~~~~i~~l~~~~~g~kv~~sigg~~~~-----~-------------~~-----------------~~~~~~~~~~~f~ 93 (210)
T cd00598 49 EPLKGALEELASKKPGLKVLISIGGWTDS-----S-------------PF-----------------TLASDPASRAAFA 93 (210)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEcCCCCC-----C-------------Cc-----------------hhhcCHHHHHHHH
Confidence 5566777788887 99999876311100 0 00 0124577888899
Q ss_pred HHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHh
Q 006791 279 DSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 321 (631)
Q Consensus 279 ~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~ 321 (631)
+++.-+++++++||+-+|.-..-.... ........+++++++
T Consensus 94 ~~~~~~v~~~~~DGidiD~E~~~~~~~-~~~~~~~~ll~~lr~ 135 (210)
T cd00598 94 NSLVSFLKTYGFDGVDIDWEYPGAADN-SDRENFITLLRELRS 135 (210)
T ss_pred HHHHHHHHHcCCCceEEeeeCCCCcCc-cHHHHHHHHHHHHHH
Confidence 999999999999999999543221110 001223457777766
No 139
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=66.66 E-value=17 Score=40.08 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=43.4
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
++|+.|+++|+|.|+|-. ....+ .. .-.++.... .++..+-++.+++.|
T Consensus 207 e~L~~L~~~G~~rVslGV-QS~~d-~V--------------------L~~inRght---------~~~v~~Ai~~lr~~G 255 (522)
T TIGR01211 207 EHIDRMLKLGATRVELGV-QTIYN-DI--------------------LERTKRGHT---------VRDVVEATRLLRDAG 255 (522)
T ss_pred HHHHHHHHcCCCEEEEEC-ccCCH-HH--------------------HHHhCCCCC---------HHHHHHHHHHHHHcC
Confidence 569999999999999865 22211 10 012222222 288999999999999
Q ss_pred CEEEEEeeccccc
Q 006791 215 IEVILDVVYNHTN 227 (631)
Q Consensus 215 i~VilDvV~NH~~ 227 (631)
++|.+|+.++--+
T Consensus 256 ~~v~~~LM~GLPg 268 (522)
T TIGR01211 256 LKVVYHIMPGLPG 268 (522)
T ss_pred CeEEEEeecCCCC
Confidence 9999999997643
No 140
>PLN03059 beta-galactosidase; Provisional
Probab=65.83 E-value=9.2 Score=44.16 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=39.7
Q ss_pred HhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHC
Q 006791 134 IQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGA 213 (631)
Q Consensus 134 ~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~ 213 (631)
.++|..+|++|+|+|..==.+...+ |.+ + ..| |.+. .||.+|++.|++.
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn~HE------p~~-----G-----~~d-------F~G~--------~DL~~Fl~la~e~ 110 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWNGHE------PSP-----G-----NYY-------FEDR--------YDLVKFIKVVQAA 110 (840)
T ss_pred HHHHHHHHHcCCCeEEEEecccccC------CCC-----C-----eee-------ccch--------HHHHHHHHHHHHc
Confidence 4568889999999999633333211 111 0 011 2334 8999999999999
Q ss_pred CCEEEEEeec
Q 006791 214 GIEVILDVVY 223 (631)
Q Consensus 214 Gi~VilDvV~ 223 (631)
||.|||=.=+
T Consensus 111 GLyvilRpGP 120 (840)
T PLN03059 111 GLYVHLRIGP 120 (840)
T ss_pred CCEEEecCCc
Confidence 9999996433
No 141
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=65.79 E-value=36 Score=34.36 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHCCCEEEEE
Q 006791 201 WEFKEMVKALHGAGIEVILD 220 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilD 220 (631)
.+|.+-|+.|+++|++|+|=
T Consensus 59 ~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 59 PQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred hhHHHHHHHHHHCCCEEEEE
Confidence 68999999999999999994
No 142
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=64.45 E-value=70 Score=33.96 Aligned_cols=113 Identities=22% Similarity=0.226 Sum_probs=67.9
Q ss_pred chHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCE
Q 006791 137 IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIE 216 (631)
Q Consensus 137 LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~ 216 (631)
++-+|+.|...|-|+--+.-+ ..-|.=..++|.+++..++. +=+++|+++|+++||+
T Consensus 87 a~~~k~AGakY~vlTaKHHDG--------------F~lw~S~~t~~n~~~~~pkr---------Div~el~~A~rk~Glk 143 (384)
T smart00812 87 ADLFKKAGAKYVVLTAKHHDG--------------FCLWDSKYSNWNAVDTGPKR---------DLVGELADAVRKRGLK 143 (384)
T ss_pred HHHHHHcCCCeEEeeeeecCC--------------ccccCCCCCCCcccCCCCCc---------chHHHHHHHHHHcCCe
Confidence 678899999988876644320 12333334566666654432 7799999999999999
Q ss_pred EEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHH---HHHHHHHHHHcCccEE
Q 006791 217 VILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI---LDSLRHWVVEYHVDGF 293 (631)
Q Consensus 217 VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i---~~~~~~W~~e~giDGf 293 (631)
+-+ | |... + |. ++.|-...+ ........+...+|+ ..-++-.+..||-|.+
T Consensus 144 ~G~---Y-~S~~--D---W~-------~p~y~~~~~----------~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~l 197 (384)
T smart00812 144 FGL---Y-HSLF--D---WF-------NPLYAGPTS----------SDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLL 197 (384)
T ss_pred EEE---E-cCHH--H---hC-------CCccccccc----------cccccccchhHHHHHHHHHHHHHHHHhcCCCceE
Confidence 988 2 2211 0 11 012210000 000112234556677 7777778889999999
Q ss_pred EEecc
Q 006791 294 RFDLA 298 (631)
Q Consensus 294 R~D~~ 298 (631)
=||..
T Consensus 198 WfD~~ 202 (384)
T smart00812 198 WFDGG 202 (384)
T ss_pred EEeCC
Confidence 99954
No 143
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=63.45 E-value=34 Score=34.09 Aligned_cols=48 Identities=19% Similarity=0.242 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHhc
Q 006791 269 NHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD 322 (631)
Q Consensus 269 ~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~~ 322 (631)
++++-|+.+++++.-+++++++||+=||--.-.. ......++++++..
T Consensus 92 ~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~------~~~~~~ll~~Lr~~ 139 (256)
T cd06546 92 DDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMS------LDGIIRLIDRLRSD 139 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCC------HhHHHHHHHHHHHH
Confidence 3456677778888888999999999999543211 11234677777763
No 144
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=63.43 E-value=21 Score=37.73 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=43.2
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
++|+.|+++||+.|.|- |...++... -.+... .+. ++..+.++.+++.|
T Consensus 109 e~l~~l~~~G~~rvslG-vQS~~~~~L---------------------~~l~R~-~s~--------~~~~~a~~~l~~~g 157 (375)
T PRK05628 109 EFFAALRAAGFTRVSLG-MQSAAPHVL---------------------AVLDRT-HTP--------GRAVAAAREARAAG 157 (375)
T ss_pred HHHHHHHHcCCCEEEEe-cccCCHHHH---------------------HHcCCC-CCH--------HHHHHHHHHHHHcC
Confidence 56899999999999874 333321111 112122 232 88999999999999
Q ss_pred CE-EEEEeeccccc
Q 006791 215 IE-VILDVVYNHTN 227 (631)
Q Consensus 215 i~-VilDvV~NH~~ 227 (631)
+. |.+|++++.-+
T Consensus 158 ~~~v~~dli~GlPg 171 (375)
T PRK05628 158 FEHVNLDLIYGTPG 171 (375)
T ss_pred CCcEEEEEeccCCC
Confidence 99 99999998844
No 145
>PRK15452 putative protease; Provisional
Probab=63.32 E-value=59 Score=35.21 Aligned_cols=19 Identities=11% Similarity=0.122 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 006791 201 WEFKEMVKALHGAGIEVIL 219 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~Vil 219 (631)
++|++.|+.||++|.+|.+
T Consensus 46 edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 46 ENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 8999999999999999976
No 146
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=60.89 E-value=18 Score=36.83 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=39.7
Q ss_pred HHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCC---C--CCCCCCCCCCCCCCCCCCchHHHHH
Q 006791 130 YLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYS---T--INFFSPMSRYAAGGGGPLKASWEFK 204 (631)
Q Consensus 130 ~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~---~--~d~~~~d~~yGt~~~~~~~~~~e~k 204 (631)
...+..-|+.+|+-|||+|+++=+.+....... +. ++..++- + .||..+++.|= +-+.
T Consensus 29 ~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~---n~----~~~~~~~~~~~~~~d~~~~N~~YF----------~~~d 91 (289)
T PF13204_consen 29 REEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTP---NR----YGFAPFPDEDPGQFDFTRPNPAYF----------DHLD 91 (289)
T ss_dssp HHHHHHHHHHHHHTT--EEEEES-SSSS-B-------T----TS-BS-SSTT------TT----HH----------HHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCccccccc---cc----CCCcCCCCCCccccCCCCCCHHHH----------HHHH
Confidence 344444589999999999999766664221110 00 1111221 1 46667776663 7799
Q ss_pred HHHHHHHHCCCEEEEEeeccc
Q 006791 205 EMVKALHGAGIEVILDVVYNH 225 (631)
Q Consensus 205 ~lV~~~H~~Gi~VilDvV~NH 225 (631)
++|+.|.++||.+ ++|+=|
T Consensus 92 ~~i~~a~~~Gi~~--~lv~~w 110 (289)
T PF13204_consen 92 RRIEKANELGIEA--ALVPFW 110 (289)
T ss_dssp HHHHHHHHTT-EE--EEESS-
T ss_pred HHHHHHHHCCCeE--EEEEEE
Confidence 9999999999888 567666
No 147
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=60.75 E-value=88 Score=31.39 Aligned_cols=65 Identities=18% Similarity=0.290 Sum_probs=40.1
Q ss_pred CcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCchHHHHHH
Q 006791 127 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYS-TINFFSPMSRYAAGGGGPLKASWEFKE 205 (631)
Q Consensus 127 ~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~-~~d~~~~d~~yGt~~~~~~~~~~e~k~ 205 (631)
+-++....+-+|+-+++|+..|.+ +. . -..|+.. ..|+..+. .. .++++
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlv----D~---G-----------W~~~~~~~~~d~~~~~---~~---------~dl~e 77 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLV----DA---G-----------WYGWEKDDDFDFTKPI---PD---------FDLPE 77 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEE----BT---T-----------CCGS--TTT--TT-B----TT-----------HHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe----cc---c-----------cccccccccccccccC---Cc---------cCHHH
Confidence 468899999999999999999998 22 0 0111222 23333322 22 78999
Q ss_pred HHHHHHHCCCEEEEEe
Q 006791 206 MVKALHGAGIEVILDV 221 (631)
Q Consensus 206 lV~~~H~~Gi~VilDv 221 (631)
||+=|+++|++|+|=+
T Consensus 78 lv~Ya~~KgVgi~lw~ 93 (273)
T PF10566_consen 78 LVDYAKEKGVGIWLWY 93 (273)
T ss_dssp HHHHHHHTT-EEEEEE
T ss_pred HHHHHHHcCCCEEEEE
Confidence 9999999999998743
No 148
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=59.18 E-value=21 Score=30.65 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=15.9
Q ss_pred HHHhhchHHHHcCCceEEECC
Q 006791 132 GLIQKIPHLLELGINAVELLP 152 (631)
Q Consensus 132 gl~~~LdyLk~LGvt~I~L~P 152 (631)
.+.+-++.+.++|+.+||+.|
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-T
T ss_pred HHHHHHHHHHHcCCCEEEEEc
Confidence 345568899999999999988
No 149
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=58.51 E-value=29 Score=36.52 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=43.0
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
++|..|+++||+.|.|-. ..+. +.-+-.+ .+-.+. ++..+.|+.+++.|
T Consensus 101 e~l~~l~~~Gv~risiGv-qS~~---------------------~~~l~~l-gR~~~~--------~~~~~ai~~l~~~G 149 (360)
T TIGR00539 101 EWCKGLKGAGINRLSLGV-QSFR---------------------DDKLLFL-GRQHSA--------KNIAPAIETALKSG 149 (360)
T ss_pred HHHHHHHHcCCCEEEEec-ccCC---------------------hHHHHHh-CCCCCH--------HHHHHHHHHHHHcC
Confidence 569999999999998754 2221 1111122 233343 88999999999999
Q ss_pred CE-EEEEeeccccc
Q 006791 215 IE-VILDVVYNHTN 227 (631)
Q Consensus 215 i~-VilDvV~NH~~ 227 (631)
+. |-+|+.+...+
T Consensus 150 ~~~v~~dli~GlPg 163 (360)
T TIGR00539 150 IENISLDLMYGLPL 163 (360)
T ss_pred CCeEEEeccCCCCC
Confidence 96 77999997744
No 150
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=56.64 E-value=37 Score=37.32 Aligned_cols=63 Identities=13% Similarity=0.231 Sum_probs=43.1
Q ss_pred HhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHC
Q 006791 134 IQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGA 213 (631)
Q Consensus 134 ~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~ 213 (631)
.++|..|++.||+.|.|.|= .+.+ .-.-.+ .+-.+. +++.+.++.|++.
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQ-S~~d---------------------~vLk~i-gR~ht~--------e~v~~ai~~ar~~ 317 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQ-TMND---------------------ETLKAI-GRHHTV--------EDIIEKFHLAREM 317 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCC-cCCH---------------------HHHHHh-CCCCCH--------HHHHHHHHHHHhC
Confidence 35688999999999987661 1111 111122 122333 8999999999999
Q ss_pred CC-EEEEEeeccccc
Q 006791 214 GI-EVILDVVYNHTN 227 (631)
Q Consensus 214 Gi-~VilDvV~NH~~ 227 (631)
|+ .|-+|+.+..-+
T Consensus 318 Gf~~In~DLI~GLPg 332 (488)
T PRK08207 318 GFDNINMDLIIGLPG 332 (488)
T ss_pred CCCeEEEEEEeCCCC
Confidence 99 788999997643
No 151
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=56.43 E-value=1.1e+02 Score=30.63 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=36.5
Q ss_pred HHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 006791 132 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 211 (631)
Q Consensus 132 gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H 211 (631)
.+.+.++.++++|++.|+|.+.... . ...+.+ + +. ++++++.+.+.
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~----------~--------~~~~~~-------~-~~--------~~~~~l~~~l~ 62 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESD----------E--------RLARLD-------W-SK--------EERLSLVKAIY 62 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcc----------c--------cccccc-------C-CH--------HHHHHHHHHHH
Confidence 4566799999999999999642100 0 011111 1 22 67999999999
Q ss_pred HCCCEEEE
Q 006791 212 GAGIEVIL 219 (631)
Q Consensus 212 ~~Gi~Vil 219 (631)
+.||+|..
T Consensus 63 ~~Gl~i~~ 70 (284)
T PRK13210 63 ETGVRIPS 70 (284)
T ss_pred HcCCCceE
Confidence 99999874
No 152
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=56.10 E-value=1.2e+02 Score=30.88 Aligned_cols=137 Identities=12% Similarity=0.078 Sum_probs=75.0
Q ss_pred CceEEEEecCcccCCC--CCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCC
Q 006791 103 DLVIYEMNVRAFTGDE--SSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTI 180 (631)
Q Consensus 103 ~~iiYei~v~~F~~~~--~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~ 180 (631)
+--||-|+|..=.+.. =...+.-.+=.+..+.+.+..+.++||++|-|-|+-+....+
T Consensus 21 ~dlI~PlFV~eg~~~~~~I~smPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd-------------------- 80 (320)
T cd04824 21 SNLIYPIFITDNPDAKQPIDSLPGINRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKD-------------------- 80 (320)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCC--------------------
Confidence 4567888875421111 011122223467889999999999999999999995321111
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccC
Q 006791 181 NFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYA 260 (631)
Q Consensus 181 d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~ 260 (631)
+.-|+...+|...+..--+.|++.. -.|-||-||.+......+ | .|+- +..
T Consensus 81 ------~~~gs~a~~~~g~v~~air~iK~~~-pdl~vi~Dvclc~YT~hG--H------cGil-------~~~------- 131 (320)
T cd04824 81 ------DRSGSAADDEDGPVIQAIKLIREEF-PELLIACDVCLCEYTSHG--H------CGIL-------YED------- 131 (320)
T ss_pred ------cCccccccCCCChHHHHHHHHHHhC-CCcEEEEeeeccCCCCCC--c------ceeE-------CCC-------
Confidence 0112222222222222222223222 489999999998765422 1 1110 000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEE
Q 006791 261 GCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 294 (631)
Q Consensus 261 ~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR 294 (631)
| .-.|.+..+.+.+...-.. +-|+|-.-
T Consensus 132 --g---~vdND~Tl~~L~k~Avs~A-~AGADiVA 159 (320)
T cd04824 132 --G---TINNEASVKRLAEVALAYA-KAGAHIVA 159 (320)
T ss_pred --C---cCcCHHHHHHHHHHHHHHH-HhCCCEEe
Confidence 0 1235677888888888887 67887543
No 153
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=56.04 E-value=7.8 Score=28.65 Aligned_cols=56 Identities=7% Similarity=0.105 Sum_probs=31.8
Q ss_pred EEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCcEEEEE
Q 006791 568 IYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILL 628 (631)
Q Consensus 568 ~lvv~N~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~vl 628 (631)
++|++|.+....+..+...-.+.+|.++....... +.. . ...-..+.+||.|+.|+
T Consensus 1 L~v~iN~~~~~k~~~Vgt~~ag~~~~D~tGn~~~~---vti-d-~dG~~~f~v~~~s~SVW 56 (57)
T PF09154_consen 1 LAVYINGSAGWKRMWVGTNWAGKTFYDYTGNSSET---VTI-D-EDGWGEFPVPPGSVSVW 56 (57)
T ss_dssp EEEEEE-SSSEEEEEEEGGGTTEEEEETTSSSSSE---EEE---TTSEEEEEE-TTEEEEE
T ss_pred CEEEEeCCCCeEEEEEccccCCCEEEEccCCCCCe---EEE-C-CCeEEEEEECCCEEEEe
Confidence 46677999888888887755555566544322111 000 0 01123789999999886
No 154
>PLN02950 4-alpha-glucanotransferase
Probab=55.55 E-value=22 Score=42.07 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEeecc
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYN 224 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~N 224 (631)
.+++++.+.|+++||++|-|+.+-
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 478889999999999999999863
No 155
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=55.06 E-value=2.5e+02 Score=28.69 Aligned_cols=134 Identities=19% Similarity=0.199 Sum_probs=75.8
Q ss_pred CceEEEEecCcccCCCC--CCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCC
Q 006791 103 DLVIYEMNVRAFTGDES--SGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTI 180 (631)
Q Consensus 103 ~~iiYei~v~~F~~~~~--~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~ 180 (631)
+-.||-|+|..=.+... ...+...+=....+.+.+..+.++|+++|-|-|+......+ + .++-.|++.
T Consensus 24 ~dlI~PlFv~e~~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD------~----~gs~A~~~~ 93 (320)
T cd04823 24 DDLILPLFVHEGENQREPIPSMPGVFRLSIDELLKEAEEAVDLGIPAVALFPVTPPELKS------E----DGSEAYNPD 93 (320)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHcCCCEEEEecCCCcccCC------c----ccccccCCC
Confidence 45678888854221111 11222223467889999999999999999999995431111 0 112122222
Q ss_pred CCCCCCCCCCCCCCCCCchH-HHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCcccc
Q 006791 181 NFFSPMSRYAAGGGGPLKAS-WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNY 259 (631)
Q Consensus 181 d~~~~d~~yGt~~~~~~~~~-~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~ 259 (631)
+ .+ ..++.+-++. -.|-||.||.+......+ | .|+- +
T Consensus 94 g-----------------~v~~air~iK~~~--p~l~vi~DVclc~YT~hG--H------cGil-------~-------- 131 (320)
T cd04823 94 N-----------------LVCRAIRAIKEAF--PELGIITDVALDPYTSHG--H------DGIV-------R-------- 131 (320)
T ss_pred C-----------------hHHHHHHHHHHhC--CCcEEEEeeeccCCCCCC--c------ceec-------c--------
Confidence 1 11 2233333333 489999999998865422 1 1110 0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEE
Q 006791 260 AGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 294 (631)
Q Consensus 260 ~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR 294 (631)
. + .-.|.+..+.+.+...-.. +-|+|-.-
T Consensus 132 ~--~---~idND~Tl~~L~~~Avs~A-~AGADiVA 160 (320)
T cd04823 132 D--G---GILNDETVEVLCKQALVQA-EAGADIVA 160 (320)
T ss_pred C--C---cCcCHHHHHHHHHHHHHHH-HhCCCEEE
Confidence 0 0 1346778888888888888 67887543
No 156
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=54.18 E-value=1.6e+02 Score=29.36 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=35.5
Q ss_pred HHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 006791 132 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 211 (631)
Q Consensus 132 gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H 211 (631)
.+.+.|+.++++|+++|+|.+-.. +-|. +.+ +. .++++|.+++.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~-------------------~~~~--------~~~-~~--------~~~~~l~~~~~ 57 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRP-------------------HAFA--------PDL-KA--------GGIKQIKALAQ 57 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCc-------------------cccc--------ccc-Cc--------hHHHHHHHHHH
Confidence 367789999999999999953110 0111 112 22 67889999999
Q ss_pred HCCCEEE
Q 006791 212 GAGIEVI 218 (631)
Q Consensus 212 ~~Gi~Vi 218 (631)
+.||+|.
T Consensus 58 ~~gl~v~ 64 (275)
T PRK09856 58 TYQMPII 64 (275)
T ss_pred HcCCeEE
Confidence 9999984
No 157
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=53.68 E-value=53 Score=35.29 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEee-cccccC
Q 006791 201 WEFKEMVKALHGAGIEVILDVV-YNHTNE 228 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV-~NH~~~ 228 (631)
+|.+++|+=|.-+|||||-++- +.|+++
T Consensus 250 eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 250 EDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred HHHHHHHHHHHhccceeeecccCCccccc
Confidence 8999999999999999999986 899986
No 158
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=53.49 E-value=37 Score=36.73 Aligned_cols=27 Identities=15% Similarity=0.475 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHCCCEEE-EEeeccccc
Q 006791 201 WEFKEMVKALHGAGIEVI-LDVVYNHTN 227 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~Vi-lDvV~NH~~ 227 (631)
++..+.|+.|++.||.+| +|+.++.-+
T Consensus 177 ~~~~~ai~~l~~~g~~~i~~dlI~GlP~ 204 (430)
T PRK08208 177 ADVHQALEWIRAAGFPILNIDLIYGIPG 204 (430)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 889999999999999865 999987744
No 159
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=53.48 E-value=1.2e+02 Score=30.25 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=19.0
Q ss_pred HHHHhhchHHHHcCCceEEECC
Q 006791 131 LGLIQKIPHLLELGINAVELLP 152 (631)
Q Consensus 131 ~gl~~~LdyLk~LGvt~I~L~P 152 (631)
..+.+.|+.++++|++.|+|..
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~ 31 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFL 31 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEc
Confidence 4567789999999999999975
No 160
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=53.37 E-value=1.2e+02 Score=30.22 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=35.8
Q ss_pred HHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 006791 133 LIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 212 (631)
Q Consensus 133 l~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~ 212 (631)
+.+.++++.++|+..|+|...-.. .+... ++ +. +++++|.+.+.+
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~-------------------~~~~~-------~~-~~--------~~~~~l~~~~~~ 56 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPR-------------------SWKGV-------RL-SE--------ETAEKFKEALKE 56 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCC-------------------CCCCC-------CC-CH--------HHHHHHHHHHHH
Confidence 557799999999999999664322 11111 11 22 678888888889
Q ss_pred CCCEEEE
Q 006791 213 AGIEVIL 219 (631)
Q Consensus 213 ~Gi~Vil 219 (631)
.||+|.+
T Consensus 57 ~gl~ls~ 63 (273)
T smart00518 57 NNIDVSV 63 (273)
T ss_pred cCCCEEE
Confidence 9999654
No 161
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=52.83 E-value=23 Score=33.32 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=26.9
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
..+..||+||+..|=++|+--- ...+||+.+.++|-++|
T Consensus 139 tAiaml~dmG~~SiKffPm~Gl-----------------------------------------~~leE~~avAkA~a~~g 177 (218)
T PF07071_consen 139 TAIAMLKDMGGSSIKFFPMGGL-----------------------------------------KHLEELKAVAKACARNG 177 (218)
T ss_dssp HHHHHHHHTT--EEEE---TTT-----------------------------------------TTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCCeeeEeecCCc-----------------------------------------ccHHHHHHHHHHHHHcC
Confidence 3478999999999999996311 11388888888888888
Q ss_pred CEE
Q 006791 215 IEV 217 (631)
Q Consensus 215 i~V 217 (631)
|.+
T Consensus 178 ~~l 180 (218)
T PF07071_consen 178 FTL 180 (218)
T ss_dssp -EE
T ss_pred cee
Confidence 765
No 162
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=52.55 E-value=55 Score=33.19 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEeeccc
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNH 225 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH 225 (631)
++..+.++.+|++||+|...+++.+
T Consensus 158 ~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 158 DDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 7888999999999999998888865
No 163
>PLN02808 alpha-galactosidase
Probab=52.16 E-value=49 Score=35.01 Aligned_cols=71 Identities=3% Similarity=-0.109 Sum_probs=44.3
Q ss_pred CCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCC----CCC--CCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCcEE
Q 006791 552 DSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPP----PPK--RQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSS 625 (631)
Q Consensus 552 ~~~vla~~r~~~~~~~~lvv~N~~~~~~~~~lp~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~ 625 (631)
...+-+|.+...++...++++|.++.++++.++.. ... .+.++|...... +......+++|+|+++
T Consensus 307 ~~~~~vW~k~L~~g~~aVal~N~~~~~~~~~~~~~~lgl~~~~~~~vrDlWs~~~~--------g~~~~~~~~~v~pHg~ 378 (386)
T PLN02808 307 DGDLEVWAGPLSKKRVAVVLWNRGSSRATITARWSDIGLNSSAVVNARDLWAHSTQ--------SSVKGQLSALVESHAC 378 (386)
T ss_pred cCCeEEEEEECCCCCEEEEEEECCCCCEEEEEEHHHhCCCCCCceEEEECCCCCcc--------CcccceEEEEECCceE
Confidence 35678888877656788999999988877775531 111 123444432111 1111234689999999
Q ss_pred EEEEe
Q 006791 626 ILLEA 630 (631)
Q Consensus 626 ~vl~~ 630 (631)
++|+.
T Consensus 379 ~~~rl 383 (386)
T PLN02808 379 KMYVL 383 (386)
T ss_pred EEEEE
Confidence 99985
No 164
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=52.08 E-value=27 Score=27.65 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=16.6
Q ss_pred CCEEEEEEcCCCCCCcEEEEEEEc
Q 006791 14 GDIWHICIEDLPRSEVLYGYRVDG 37 (631)
Q Consensus 14 g~vw~~~i~~~~~~g~~Y~y~i~~ 37 (631)
++.|++.++ ++...+.|+|.|++
T Consensus 34 ~~~~~~~~~-L~~g~y~YkF~Vdg 56 (79)
T cd02859 34 GKGFSATLR-LPPGKYQYKFIVDG 56 (79)
T ss_pred CCCcEEEEE-cCCCCEEEEEEECC
Confidence 334999886 55456799999975
No 165
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=51.62 E-value=31 Score=34.23 Aligned_cols=84 Identities=11% Similarity=0.117 Sum_probs=41.8
Q ss_pred HHhhchHHHHcCCceEEECCCcccchhhhh---hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 006791 133 LIQKIPHLLELGINAVELLPVFEFDEMEFQ---RRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 209 (631)
Q Consensus 133 l~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~---~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~ 209 (631)
+.+.|+.++++|++.|+|...+........ ...|-. ...+.+...++..-.......+.......+.+++.++.
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 93 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLE---HTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRY 93 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCc---EEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHH
Confidence 566789999999999999664332211111 011100 01111111111100000000111112234679999999
Q ss_pred HHHCCCEEEE
Q 006791 210 LHGAGIEVIL 219 (631)
Q Consensus 210 ~H~~Gi~Vil 219 (631)
|++.|.++|.
T Consensus 94 a~~lga~~i~ 103 (258)
T PRK09997 94 ARALGNKKIN 103 (258)
T ss_pred HHHhCCCEEE
Confidence 9999999873
No 166
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=50.64 E-value=3e+02 Score=28.24 Aligned_cols=132 Identities=22% Similarity=0.223 Sum_probs=74.7
Q ss_pred CceEEEEecCcccCCCC--CCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCC
Q 006791 103 DLVIYEMNVRAFTGDES--SGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTI 180 (631)
Q Consensus 103 ~~iiYei~v~~F~~~~~--~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~ 180 (631)
+--||-|+|..=.+... +..+...+=....+.+.+..+.++||++|-|-|+-+. .+ + .++-.|++.
T Consensus 29 ~dlI~PiFV~eg~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~av~LFgv~~~--Kd------~----~gs~A~~~~ 96 (323)
T PRK09283 29 NDLIYPLFVVEGENEREEIPSMPGVYRLSIDLLVKEAEEAVELGIPAVALFGVPEL--KD------E----DGSEAYNPD 96 (323)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCcCCC--CC------c----ccccccCCC
Confidence 44678888754211110 1122222346788999999999999999999999222 10 0 112122222
Q ss_pred CCCCCCCCCCCCCCCCCchH-HHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCcccc
Q 006791 181 NFFSPMSRYAAGGGGPLKAS-WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNY 259 (631)
Q Consensus 181 d~~~~d~~yGt~~~~~~~~~-~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~ 259 (631)
+ .+ ..++.+-++. -.|-||-||.+......|+ .|+- .+
T Consensus 97 g-----------------~v~rair~iK~~~--p~l~vi~DVcLc~YT~hGH--------cGil-------------~~- 135 (323)
T PRK09283 97 G-----------------LVQRAIRAIKKAF--PELGVITDVCLDEYTSHGH--------CGIL-------------ED- 135 (323)
T ss_pred C-----------------HHHHHHHHHHHhC--CCcEEEEeeeccCCCCCCc--------eecc-------------cC-
Confidence 1 11 3333333333 5899999999988654221 1110 00
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEE
Q 006791 260 AGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 294 (631)
Q Consensus 260 ~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR 294 (631)
| .-.|.+..+.+.+...-.. +-|+|-.-
T Consensus 136 ---g---~idND~Tl~~L~~~Al~~A-~AGaDiVA 163 (323)
T PRK09283 136 ---G---YVDNDETLELLAKQALSQA-EAGADIVA 163 (323)
T ss_pred ---C---cCcCHHHHHHHHHHHHHHH-HhCCCEEE
Confidence 0 1136777888888888887 67887643
No 167
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=50.60 E-value=39 Score=32.56 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHCCCEEEE
Q 006791 200 SWEFKEMVKALHGAGIEVIL 219 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~Vil 219 (631)
.++++++.+.+.++|+.|++
T Consensus 192 ~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 192 SADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCeEEe
Confidence 38899999999999999974
No 168
>PRK05660 HemN family oxidoreductase; Provisional
Probab=50.31 E-value=49 Score=35.04 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=42.5
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
++|.-||++|||.|.|.. ..++ +.-+-.+.. -.+. ++..+-++.+++.|
T Consensus 108 e~l~~Lk~~Gv~risiGv-qS~~---------------------~~~L~~l~r-~~~~--------~~~~~ai~~~~~~G 156 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV-QSFS---------------------EEKLKRLGR-IHGP--------DEAKRAAKLAQGLG 156 (378)
T ss_pred HHHHHHHHcCCCEEEecc-CcCC---------------------HHHHHHhCC-CCCH--------HHHHHHHHHHHHcC
Confidence 679999999999999864 2221 111112221 2233 88888899999999
Q ss_pred CEEE-EEeeccccc
Q 006791 215 IEVI-LDVVYNHTN 227 (631)
Q Consensus 215 i~Vi-lDvV~NH~~ 227 (631)
+..| +|+.+...+
T Consensus 157 ~~~v~~dli~Glpg 170 (378)
T PRK05660 157 LRSFNLDLMHGLPD 170 (378)
T ss_pred CCeEEEEeecCCCC
Confidence 9764 999987744
No 169
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=49.33 E-value=60 Score=32.36 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHH
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 280 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~ 280 (631)
.++.+-|..|+++||+|+--+.++--++ .++.|++.
T Consensus 168 ~~y~dav~r~rkrgIkvc~HiI~GLPgE--------------------------------------------~~~~mleT 203 (312)
T COG1242 168 ACYVDAVKRLRKRGIKVCTHLINGLPGE--------------------------------------------TRDEMLET 203 (312)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeeCCCCC--------------------------------------------CHHHHHHH
Confidence 7899999999999999986655543221 46788999
Q ss_pred HHHHHHHcCccEEEEecccccc
Q 006791 281 LRHWVVEYHVDGFRFDLASVLC 302 (631)
Q Consensus 281 ~~~W~~e~giDGfR~D~~~~l~ 302 (631)
++.-. +.+|||+-+-..+.+-
T Consensus 204 ak~v~-~~~v~GIKlH~Lhvvk 224 (312)
T COG1242 204 AKIVA-ELGVDGIKLHPLHVVK 224 (312)
T ss_pred HHHHH-hcCCceEEEEEEEEec
Confidence 99666 8999999998666553
No 170
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=49.02 E-value=56 Score=27.70 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.3
Q ss_pred HHHHHhhchHHHHcCCceEEECCCccc
Q 006791 130 YLGLIQKIPHLLELGINAVELLPVFEF 156 (631)
Q Consensus 130 ~~gl~~~LdyLk~LGvt~I~L~Pi~~~ 156 (631)
=.++..++..|++-|+++|+|..-...
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~ 77 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVK 77 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEec
Confidence 566778888899999999999998876
No 171
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=48.66 E-value=33 Score=38.24 Aligned_cols=63 Identities=22% Similarity=0.413 Sum_probs=42.5
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
+.|...|++|+++|+--=.+...+ |.+ . .| .|+.. -||.+||+++|+.|
T Consensus 53 ~~i~k~k~~Gln~IqtYVfWn~He------p~~--g-----~y----------~FsG~--------~DlvkFikl~~~~G 101 (649)
T KOG0496|consen 53 DLIKKAKAGGLNVIQTYVFWNLHE------PSP--G-----KY----------DFSGR--------YDLVKFIKLIHKAG 101 (649)
T ss_pred HHHHHHHhcCCceeeeeeeccccc------CCC--C-----cc----------cccch--------hHHHHHHHHHHHCC
Confidence 457889999999998533322211 111 0 12 25555 89999999999999
Q ss_pred CEEEEEeecccccC
Q 006791 215 IEVILDVVYNHTNE 228 (631)
Q Consensus 215 i~VilDvV~NH~~~ 228 (631)
+-|||=+=+==+++
T Consensus 102 Lyv~LRiGPyIcaE 115 (649)
T KOG0496|consen 102 LYVILRIGPYICAE 115 (649)
T ss_pred eEEEecCCCeEEec
Confidence 99999876544443
No 172
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=47.99 E-value=1e+02 Score=33.85 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=46.4
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
.-|.-..+-+.-+++||+++.-+.=-+..- -|. |. -+.. -...++=.++||
T Consensus 68 D~Yhry~eDi~l~~~lG~~~yR~si~WsRi--------~P~-------g~-----------~~~~---n~~~~~~Y~~~i 118 (474)
T PRK09852 68 DFYHRYKEDIALMAEMGFKVFRTSIAWSRL--------FPQ-------GD-----------ELTP---NQQGIAFYRSVF 118 (474)
T ss_pred chhhhhHHHHHHHHHcCCCeEEeeceeeee--------eeC-------CC-----------CCCC---CHHHHHHHHHHH
Confidence 457778888999999999998876544320 010 11 0100 113457789999
Q ss_pred HHHHHCCCEEEEEeeccccc
Q 006791 208 KALHGAGIEVILDVVYNHTN 227 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~~ 227 (631)
++|+++||++|+.+. |..
T Consensus 119 ~~l~~~gi~p~VtL~--H~~ 136 (474)
T PRK09852 119 EECKKYGIEPLVTLC--HFD 136 (474)
T ss_pred HHHHHcCCEEEEEee--CCC
Confidence 999999999998764 643
No 173
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=47.34 E-value=49 Score=33.17 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEeeccc
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNH 225 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH 225 (631)
.-.-++-+.|...||+|++|+-|.-
T Consensus 104 ~k~ieiakRAk~~GmKVl~dFHYSD 128 (403)
T COG3867 104 KKAIEIAKRAKNLGMKVLLDFHYSD 128 (403)
T ss_pred HHHHHHHHHHHhcCcEEEeeccchh
Confidence 3445566788999999999997643
No 174
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=47.23 E-value=1.1e+02 Score=33.26 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHCC-CEEEEEeeccccc
Q 006791 201 WEFKEMVKALHGAG-IEVILDVVYNHTN 227 (631)
Q Consensus 201 ~e~k~lV~~~H~~G-i~VilDvV~NH~~ 227 (631)
++..+.++.+++.| +.|.+|+++..-+
T Consensus 199 ~~~~~~i~~l~~~g~~~v~~DlI~GlPg 226 (449)
T PRK09058 199 EEVLARLEELVARDRAAVVCDLIFGLPG 226 (449)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEeeCCC
Confidence 88889999999999 8899999998744
No 175
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=47.13 E-value=1.7e+02 Score=31.10 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEeecccc-cC
Q 006791 200 SWEFKEMVKALHGAGIEVILDVVYNHT-NE 228 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilDvV~NH~-~~ 228 (631)
+..||+|++++|++|-++++-+ +|. +.
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr 109 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGR 109 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCC
Confidence 5789999999999999999776 575 54
No 176
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=47.10 E-value=3.3e+02 Score=27.81 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=74.3
Q ss_pred CceEEEEecCcccCCC--CCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCC
Q 006791 103 DLVIYEMNVRAFTGDE--SSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTI 180 (631)
Q Consensus 103 ~~iiYei~v~~F~~~~--~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~ 180 (631)
+-.||-|+|..=.+.. =...+...+=....+.+.+..+.++||++|-|-|+-+. .+ + .++-.|++.
T Consensus 31 ~dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~~--Kd------~----~gs~A~~~~ 98 (322)
T PRK13384 31 SDLIYPIFIEEHITDAVPISTLPGISRLPESALADEIERLYALGIRYVMPFGISHH--KD------A----KGSDTWDDN 98 (322)
T ss_pred HHceeeEEEecCCCCceecCCCCCcceECHHHHHHHHHHHHHcCCCEEEEeCCCCC--CC------C----CcccccCCC
Confidence 4568888885321111 01122223346788889999999999999999999432 10 0 111122221
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH--CCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccc
Q 006791 181 NFFSPMSRYAAGGGGPLKASWEFKEMVKALHG--AGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN 258 (631)
Q Consensus 181 d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~--~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~ 258 (631)
. =..+-|+++++ -.|-||-||.+......+ | .|+- +
T Consensus 99 -----------------g---~v~~air~iK~~~pdl~vi~DVcLc~YT~hG--H------cGil-------~------- 136 (322)
T PRK13384 99 -----------------G---LLARMVRTIKAAVPEMMVIPDICFCEYTDHG--H------CGVL-------H------- 136 (322)
T ss_pred -----------------C---hHHHHHHHHHHHCCCeEEEeeeecccCCCCC--c------eeec-------c-------
Confidence 1 12333333333 489999999998765422 1 1110 0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEE
Q 006791 259 YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGF 293 (631)
Q Consensus 259 ~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGf 293 (631)
. + .-.|.+..+.+.+...-.. +-|+|-.
T Consensus 137 -~--g---~i~ND~Tl~~L~~~Als~A-~AGADiV 164 (322)
T PRK13384 137 -N--D---EVDNDATVENLVKQSVTAA-KAGADML 164 (322)
T ss_pred -C--C---cCccHHHHHHHHHHHHHHH-HcCCCeE
Confidence 0 0 1246778888888888888 6788754
No 177
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=47.10 E-value=61 Score=35.28 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHCCC-EEEEEeeccccc
Q 006791 201 WEFKEMVKALHGAGI-EVILDVVYNHTN 227 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi-~VilDvV~NH~~ 227 (631)
++..+.++.+++.|| .|-+|+.++.-+
T Consensus 187 ~~~~~ai~~l~~~G~~~v~~dli~GlPg 214 (453)
T PRK09249 187 EFTFALVEAARELGFTSINIDLIYGLPK 214 (453)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEccCCC
Confidence 889999999999999 899999998744
No 178
>PLN02229 alpha-galactosidase
Probab=46.96 E-value=68 Score=34.35 Aligned_cols=71 Identities=3% Similarity=-0.209 Sum_probs=42.0
Q ss_pred CcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCCC---CCC---CeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCcEEE
Q 006791 553 SKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPP---PKR---QWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSI 626 (631)
Q Consensus 553 ~~vla~~r~~~~~~~~lvv~N~~~~~~~~~lp~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~ 626 (631)
..+-++.+...++..+++++|.++.++++.++... .+. +.++|....... .......+++|+|++++
T Consensus 341 ~~~~vW~~~L~~g~~aValfN~~~~~~~v~v~~~~lGl~~~~~~~VrDLW~~~dlg-------~~~~~~~~~~v~~Hg~~ 413 (427)
T PLN02229 341 GCQQVWAGPLSGDRLVVALWNRCSEPATITASWDVIGLESSISVSVRDLWKHKDLS-------ENVVGSFGAQVDAHDCH 413 (427)
T ss_pred CceEEEEEECCCCCEEEEEEeCCCCCEEEEEEHHHcCCCCCCceEEEECCCCCccC-------ccccceEEEEECCCeEE
Confidence 34677788765456688889999888888765311 111 223444221100 00112236889999999
Q ss_pred EEEe
Q 006791 627 LLEA 630 (631)
Q Consensus 627 vl~~ 630 (631)
+|+.
T Consensus 414 l~rl 417 (427)
T PLN02229 414 MYIF 417 (427)
T ss_pred EEEE
Confidence 9975
No 179
>PRK07094 biotin synthase; Provisional
Probab=46.65 E-value=54 Score=33.78 Aligned_cols=27 Identities=19% Similarity=0.048 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEeeccccc
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNHTN 227 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH~~ 227 (631)
++..+.++.+|+.||.|..++++.+-+
T Consensus 165 ~~~~~~i~~l~~~Gi~v~~~~iiGlpg 191 (323)
T PRK07094 165 ENRIACLKDLKELGYEVGSGFMVGLPG 191 (323)
T ss_pred HHHHHHHHHHHHcCCeecceEEEECCC
Confidence 889999999999999999999988744
No 180
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=46.47 E-value=43 Score=38.52 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEeeccc
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNH 225 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH 225 (631)
.+++++.+.|+++||++|-|+.+-=
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgV 298 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGV 298 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecee
Confidence 5788888999999999999998643
No 181
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=46.07 E-value=65 Score=33.73 Aligned_cols=63 Identities=19% Similarity=0.322 Sum_probs=43.0
Q ss_pred HhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHC
Q 006791 134 IQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGA 213 (631)
Q Consensus 134 ~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~ 213 (631)
.++|..|+++|||.|.| .|..+.+.. .-.+ .+-.+. ++..+.|+.+++.
T Consensus 98 ~e~l~~l~~~GvnRiSi-GvQS~~~~~---------------------L~~l-gR~~~~--------~~~~~ai~~lr~~ 146 (350)
T PRK08446 98 KAWLKGMKNLGVNRISF-GVQSFNEDK---------------------LKFL-GRIHSQ--------KQIIKAIENAKKA 146 (350)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCCHHH---------------------HHHc-CCCCCH--------HHHHHHHHHHHHc
Confidence 36799999999999985 444442211 1111 122233 8899999999999
Q ss_pred CCE-EEEEeeccccc
Q 006791 214 GIE-VILDVVYNHTN 227 (631)
Q Consensus 214 Gi~-VilDvV~NH~~ 227 (631)
|+. |-+|+.++..+
T Consensus 147 g~~~v~iDli~GlPg 161 (350)
T PRK08446 147 GFENISIDLIYDTPL 161 (350)
T ss_pred CCCEEEEEeecCCCC
Confidence 996 66999997744
No 182
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=45.37 E-value=65 Score=35.11 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHCCCE-EEEEeeccccc
Q 006791 201 WEFKEMVKALHGAGIE-VILDVVYNHTN 227 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~-VilDvV~NH~~ 227 (631)
++..+.++.+++.|+. |-+|+.+..-+
T Consensus 188 ~~~~~ai~~lr~~G~~~v~~dli~GlPg 215 (453)
T PRK13347 188 EMVARAVELLRAAGFESINFDLIYGLPH 215 (453)
T ss_pred HHHHHHHHHHHhcCCCcEEEeEEEeCCC
Confidence 8899999999999997 88999987744
No 183
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=43.41 E-value=1.6e+02 Score=30.75 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHCCCEEEEE
Q 006791 201 WEFKEMVKALHGAGIEVILD 220 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilD 220 (631)
++|++.|+.||++|.++++=
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~ 68 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVA 68 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEE
Confidence 88999999999999998753
No 184
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=43.37 E-value=71 Score=32.55 Aligned_cols=137 Identities=20% Similarity=0.189 Sum_probs=72.4
Q ss_pred CceEEEEecCcccCCCC--CCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCC
Q 006791 103 DLVIYEMNVRAFTGDES--SGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTI 180 (631)
Q Consensus 103 ~~iiYei~v~~F~~~~~--~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~ 180 (631)
+-.||-|||..=.+... +..+...+=++..+.+.+..+.++||.+|-|-|+.+....+. .++..|++.
T Consensus 27 ~dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~----------~gs~a~~~~ 96 (324)
T PF00490_consen 27 SDLIYPLFVVEGENEKEPISSMPGVYRYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDE----------EGSEAYNPD 96 (324)
T ss_dssp GGEEEEEEEESSSSSEEEETTSTTEEEEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BS----------S-GGGGSTT
T ss_pred HHeEEEEEEecCCCcceeccCCCCeeeeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCc----------chhcccCCC
Confidence 45788888854222111 112222234678899999999999999999999954321110 111122222
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccC
Q 006791 181 NFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYA 260 (631)
Q Consensus 181 d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~ 260 (631)
..+..--+.+++.. -.|-||.||.+......+ |- |+-. +..+
T Consensus 97 -----------------g~v~~air~iK~~~-pdl~vi~Dvclc~YT~hG--Hc------Gil~------~~~g------ 138 (324)
T PF00490_consen 97 -----------------GLVQRAIRAIKKAF-PDLLVITDVCLCEYTSHG--HC------GILD------DEDG------ 138 (324)
T ss_dssp -----------------SHHHHHHHHHHHHS-TTSEEEEEE-STTTBTSS--SS------SEB-------CTTS------
T ss_pred -----------------ChHHHHHHHHHHhC-CCcEEEEecccccccCCC--ce------EEEE------CCCC------
Confidence 11233333333333 579999999998765422 11 1100 0011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEEE
Q 006791 261 GCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 294 (631)
Q Consensus 261 ~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGfR 294 (631)
.-.|.+..+.+.+...-.. +-|+|-.-
T Consensus 139 ------~idND~Tl~~Lak~Al~~A-~AGADiVA 165 (324)
T PF00490_consen 139 ------EIDNDETLERLAKQALSHA-EAGADIVA 165 (324)
T ss_dssp ------SBEHHHHHHHHHHHHHHHH-HHT-SEEE
T ss_pred ------eEecHHHHHHHHHHHHHHH-HhCCCeec
Confidence 1235677888888888888 67988654
No 185
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=42.80 E-value=44 Score=33.01 Aligned_cols=85 Identities=9% Similarity=0.084 Sum_probs=41.3
Q ss_pred HHHhhchHHHHcCCceEEECCCcccchhhhh---hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 006791 132 GLIQKIPHLLELGINAVELLPVFEFDEMEFQ---RRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 208 (631)
Q Consensus 132 gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~---~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~ 208 (631)
.+.+.++-++++|++.|+|.-.++..-.... ...+-. ....+....++......+...+.......+.++++++
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLE---QVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIA 91 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCe---EEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHH
Confidence 3566678889999999999643332111110 011100 0000011111111111111111111123477899999
Q ss_pred HHHHCCCEEEE
Q 006791 209 ALHGAGIEVIL 219 (631)
Q Consensus 209 ~~H~~Gi~Vil 219 (631)
.|++.|.++|.
T Consensus 92 ~a~~lg~~~i~ 102 (254)
T TIGR03234 92 YARALGCPQVN 102 (254)
T ss_pred HHHHhCCCEEE
Confidence 99999999874
No 186
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=42.41 E-value=79 Score=33.16 Aligned_cols=62 Identities=21% Similarity=0.177 Sum_probs=43.0
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
++|+-|+++|++.|.| +|...++... -.+.. -.+. ++..+.|+.|++.|
T Consensus 104 e~l~~lk~~G~nrisi-GvQS~~d~vL---------------------~~l~R-~~~~--------~~~~~ai~~lr~~G 152 (353)
T PRK05904 104 SQINLLKKNKVNRISL-GVQSMNNNIL---------------------KQLNR-THTI--------QDSKEAINLLHKNG 152 (353)
T ss_pred HHHHHHHHcCCCEEEE-ecccCCHHHH---------------------HHcCC-CCCH--------HHHHHHHHHHHHcC
Confidence 5689999999999876 4444322111 11111 1233 89999999999999
Q ss_pred CE-EEEEeeccccc
Q 006791 215 IE-VILDVVYNHTN 227 (631)
Q Consensus 215 i~-VilDvV~NH~~ 227 (631)
+. |-+|+.++.-+
T Consensus 153 ~~~v~~dlI~GlPg 166 (353)
T PRK05904 153 IYNISCDFLYCLPI 166 (353)
T ss_pred CCcEEEEEeecCCC
Confidence 97 88999998744
No 187
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=41.95 E-value=71 Score=33.78 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=41.1
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
+.|..|+++|++.|.|.. ..+.+. -+-.+. +-.+. ++..+.|+.+++.|
T Consensus 101 e~l~~l~~~G~~rvsiGv-qS~~~~---------------------~l~~l~-r~~~~--------~~~~~~i~~l~~~g 149 (377)
T PRK08599 101 EKLQVLKDSGVNRISLGV-QTFNDE---------------------LLKKIG-RTHNE--------EDVYEAIANAKKAG 149 (377)
T ss_pred HHHHHHHHcCCCEEEEec-ccCCHH---------------------HHHHcC-CCCCH--------HHHHHHHHHHHHcC
Confidence 568889999999888754 222111 111111 12232 88999999999999
Q ss_pred CE-EEEEeeccccc
Q 006791 215 IE-VILDVVYNHTN 227 (631)
Q Consensus 215 i~-VilDvV~NH~~ 227 (631)
+. |-+|+.++.-+
T Consensus 150 ~~~v~~dli~GlPg 163 (377)
T PRK08599 150 FDNISIDLIYALPG 163 (377)
T ss_pred CCcEEEeeecCCCC
Confidence 98 66899987744
No 188
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.74 E-value=68 Score=33.09 Aligned_cols=28 Identities=14% Similarity=0.379 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEeecccccC
Q 006791 199 ASWEFKEMVKALHGAGIEVILDVVYNHTNE 228 (631)
Q Consensus 199 ~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~ 228 (631)
.++.+|++++++|+.|-++++-+ +|.+.
T Consensus 75 ~~~~~~~~~~~vh~~g~~~~~Ql--~h~G~ 102 (327)
T cd02803 75 QIPGLRKLTEAVHAHGAKIFAQL--AHAGR 102 (327)
T ss_pred HHHHHHHHHHHHHhCCCHhhHHh--hCCCc
Confidence 46889999999999999987665 78776
No 189
>PRK01060 endonuclease IV; Provisional
Probab=41.18 E-value=45 Score=33.47 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=35.8
Q ss_pred HHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 006791 132 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 211 (631)
Q Consensus 132 gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H 211 (631)
++.+.|+.++++|+++|+|.+--.. .+.. +.+ +. +++++|.+.+.
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~-------------------~~~~-------~~~-~~--------~~~~~lk~~~~ 57 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQ-------------------QWKR-------KPL-EE--------LNIEAFKAACE 57 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCC-------------------CCcC-------CCC-CH--------HHHHHHHHHHH
Confidence 3677789999999999999752111 1111 112 33 78888999999
Q ss_pred HCCCEE
Q 006791 212 GAGIEV 217 (631)
Q Consensus 212 ~~Gi~V 217 (631)
+.||++
T Consensus 58 ~~gl~~ 63 (281)
T PRK01060 58 KYGISP 63 (281)
T ss_pred HcCCCC
Confidence 999985
No 190
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=40.59 E-value=79 Score=34.45 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHCCCE-EEEEeeccccc
Q 006791 201 WEFKEMVKALHGAGIE-VILDVVYNHTN 227 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~-VilDvV~NH~~ 227 (631)
++..+.++.+++.|+. |-+|+.++..+
T Consensus 187 ~~~~~ai~~l~~~G~~~v~~dli~GlPg 214 (455)
T TIGR00538 187 EMIFELMNHAREAGFTSINIDLIYGLPK 214 (455)
T ss_pred HHHHHHHHHHHhcCCCcEEEeEEeeCCC
Confidence 7889999999999996 77999987744
No 191
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=39.82 E-value=32 Score=29.56 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEE
Q 006791 200 SWEFKEMVKALHGAGIEVILD 220 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilD 220 (631)
+.|+|.+-+.+.++||+|++|
T Consensus 21 ~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 21 VKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred HHHHHHHHHHHHhCCcEEEEC
Confidence 599999999999999999998
No 192
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=38.70 E-value=27 Score=35.47 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEee
Q 006791 200 SWEFKEMVKALHGAGIEVILDVV 222 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilDvV 222 (631)
.++++++.+-||++||.|.||..
T Consensus 144 ~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 144 LEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEET
T ss_pred HHHHHHHHHHHHhCceEEEEehh
Confidence 39999999999999999999975
No 193
>PRK09989 hypothetical protein; Provisional
Probab=38.68 E-value=61 Score=32.08 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=41.5
Q ss_pred HHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCC----CC-CCCCC--CCCCCCCchHHHHHH
Q 006791 133 LIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFF----SP-MSRYA--AGGGGPLKASWEFKE 205 (631)
Q Consensus 133 l~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~----~~-d~~yG--t~~~~~~~~~~e~k~ 205 (631)
+.+.|+.++++|+++|+|.-............- ...|-.+..+- .+ .+.++ ..+......++++++
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l-------~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 89 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYDYSTLQIQKQL-------EQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDL 89 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCHHHHHHHH-------HHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHH
Confidence 567899999999999999544333211110000 00111111100 00 01111 111112234577999
Q ss_pred HHHHHHHCCCEEE
Q 006791 206 MVKALHGAGIEVI 218 (631)
Q Consensus 206 lV~~~H~~Gi~Vi 218 (631)
.++.|++.|.+.|
T Consensus 90 ~i~~A~~lg~~~v 102 (258)
T PRK09989 90 ALEYALALNCEQV 102 (258)
T ss_pred HHHHHHHhCcCEE
Confidence 9999999999877
No 194
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.67 E-value=2.8e+02 Score=29.12 Aligned_cols=28 Identities=25% Similarity=0.346 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEeecccccC
Q 006791 199 ASWEFKEMVKALHGAGIEVILDVVYNHTNE 228 (631)
Q Consensus 199 ~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~ 228 (631)
-+..||+|++++|++|=++++-+ +|.+.
T Consensus 76 ~i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr 103 (361)
T cd04747 76 ALAGWKKVVDEVHAAGGKIAPQL--WHVGA 103 (361)
T ss_pred HHHHHHHHHHHHHhcCCEEEEec--cCCCC
Confidence 46889999999999999999886 77665
No 195
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=37.89 E-value=1e+02 Score=32.56 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=42.2
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
++|..|+++|||.|.|- |..+.+.. .-.+.... +. ++..+-|+.+++.|
T Consensus 104 ~~l~~l~~~G~nrislG-vQS~~~~~---------------------L~~l~R~~-~~--------~~~~~ai~~~~~~g 152 (370)
T PRK06294 104 SYIRALALTGINRISIG-VQTFDDPL---------------------LKLLGRTH-SS--------SKAIDAVQECSEHG 152 (370)
T ss_pred HHHHHHHHCCCCEEEEc-cccCCHHH---------------------HHHcCCCC-CH--------HHHHHHHHHHHHcC
Confidence 56999999999999864 33332111 11111112 22 78889999999999
Q ss_pred CE-EEEEeeccccc
Q 006791 215 IE-VILDVVYNHTN 227 (631)
Q Consensus 215 i~-VilDvV~NH~~ 227 (631)
+. |-+|+.++.-+
T Consensus 153 ~~~v~~Dli~GlPg 166 (370)
T PRK06294 153 FSNLSIDLIYGLPT 166 (370)
T ss_pred CCeEEEEeecCCCC
Confidence 96 88999987744
No 196
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=37.49 E-value=4.6e+02 Score=27.77 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=63.3
Q ss_pred CCCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhh-----------chHHHHcCCceEEECCCcccchhhhhhcCCCCC
Q 006791 101 EKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK-----------IPHLLELGINAVELLPVFEFDEMEFQRRRNPRD 169 (631)
Q Consensus 101 ~~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~-----------LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~ 169 (631)
.+...+|+-|+..|.+..- |+++..+++ ..-+|+.|..- ++|+.++.+.
T Consensus 21 ~e~~~~~~fh~nT~~dq~~--------f~~~~f~~~Ftae~wDP~eWar~fK~aGAKy--vilvakHHDG---------- 80 (430)
T COG3669 21 QEGSPFYHFHPNTYGDQEW--------FGGQEFPPRFTAENWDPREWARLFKEAGAKY--VILVAKHHDG---------- 80 (430)
T ss_pred ccCCceEEeccccccCccc--------ccccccccccCcccCCHHHHHHHHHHcCCcE--EEEeeeecCC----------
Confidence 4678899999999876432 556665553 46789999885 5577776211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCccc
Q 006791 170 HMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT 237 (631)
Q Consensus 170 ~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~ 237 (631)
..-|+=+-+++.+ ++.|.+ -+-++++.+++.+.||+. -|++|-+ .|+|+.
T Consensus 81 --FaLw~t~ys~wns--vk~GpK-------rDlvgela~Avr~qGL~F---Gvy~s~a----~h~W~~ 130 (430)
T COG3669 81 --FALWPTDYSVWNS--VKRGPK-------RDLVGELAKAVREQGLRF---GVYLSGA----WHPWDF 130 (430)
T ss_pred --eeecccccccccc--cccCCc-------ccHHHHHHHHHHHcCCee---eEeeccC----cccccc
Confidence 0111111222223 455654 156888999999999886 5688866 678874
No 197
>PF09083 DUF1923: Domain of unknown function (DUF1923); InterPro: IPR015167 This domain is found in maltosyltransferases, adopting a secondary structure that consists of eight antiparallel beta-strands forming an open-sided 'jelly roll' Greek key beta-barrel. Their exact function is, as yet, unknown []. ; PDB: 1GJW_A 1GJU_A.
Probab=37.47 E-value=85 Score=22.56 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=23.2
Q ss_pred CCCcEEEEEEecCCCCeEEEEEeCCCCcEEEE
Q 006791 551 YDSKFLAFTLHDNNGADIYLAFNAHDFFVKVS 582 (631)
Q Consensus 551 ~~~~vla~~r~~~~~~~~lvv~N~~~~~~~~~ 582 (631)
.+.+++.|+...+ ++.++|+.|.+.++.+++
T Consensus 7 s~~dlv~ysyek~-g~k~viaanvgke~ke~s 37 (64)
T PF09083_consen 7 SNKDLVMYSYEKN-GQKIVIAANVGKEPKEIS 37 (64)
T ss_dssp -BTTEEEEEEEET-TEEEEEEEE-SSS-EEEE
T ss_pred cccceEEEEeecC-CcEEEEEeccCCCccccc
Confidence 3567888888666 789999999999988775
No 198
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=37.34 E-value=51 Score=31.46 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.4
Q ss_pred HhhchHHHHcCCceEEECCCcc
Q 006791 134 IQKIPHLLELGINAVELLPVFE 155 (631)
Q Consensus 134 ~~~LdyLk~LGvt~I~L~Pi~~ 155 (631)
...+..||+||.+.|=.+|+--
T Consensus 138 etAiaml~dmG~~SiKffPM~G 159 (236)
T TIGR03581 138 ETAIAMLKDMGGSSVKFFPMGG 159 (236)
T ss_pred HHHHHHHHHcCCCeeeEeecCC
Confidence 3458899999999999999743
No 199
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=37.25 E-value=2.9e+02 Score=27.01 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=47.8
Q ss_pred HHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCC---------------CCCCCCCCCCCCC
Q 006791 130 YLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTIN---------------FFSPMSRYAAGGG 194 (631)
Q Consensus 130 ~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d---------------~~~~d~~yGt~~~ 194 (631)
-.+++.-+..|..+.=-.+.++|+..- |||...+ |.++++...-...
T Consensus 55 ~~~al~fi~~L~~~~~~n~~I~P~vNP------------------DGYe~~~~L~r~nP~~~hHaaR~~A~g~D~~fr~~ 116 (240)
T cd06232 55 VVGALRAAEALAARPGAHFALIPLENP------------------DGYALHERLRAEHPRHMHHAARYTALGDDLEYREF 116 (240)
T ss_pred HHHHHHHHHHHhccCCceEEEEEeeCC------------------cHHHhhchhhccCcccccchhhhcccCCCcccccC
Confidence 444444455555566667888998653 3444432 3344333331112
Q ss_pred CCCchHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcC
Q 006791 195 GPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 247 (631)
Q Consensus 195 ~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~y 247 (631)
.+....+.++++++.. |..|.+|+ |-.. +|.|...+.+-++..|
T Consensus 117 ~~~~Es~~~~~~~~~~---~~~~hiDl---Heyp---~~E~~~~la~~~~~~~ 160 (240)
T cd06232 117 PPFGEREARHQALAKS---GAQLHVNL---HGYP---AHEWTRPLSGYVPRGF 160 (240)
T ss_pred CcchHHHHHHHHHHhh---CCcEEEEC---CCCC---cccccccccccCCCCC
Confidence 2333335566666554 78888884 6554 4566666655544333
No 200
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=37.11 E-value=96 Score=33.14 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=42.9
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
++|.-|++.|||.|.|-. ..+++.. .-.+.... +. ++..+.++.+++.|
T Consensus 116 e~l~~l~~~GvnrislGv-QS~~d~~---------------------L~~l~R~~-~~--------~~~~~ai~~l~~~G 164 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGV-QAFQDEL---------------------LALCGRSH-RV--------KDIFAAVDLIHQAG 164 (400)
T ss_pred HHHHHHHHCCCCEEEEEc-ccCCHHH---------------------HHHhCCCC-CH--------HHHHHHHHHHHHcC
Confidence 578999999999999754 3332111 11121222 32 88999999999999
Q ss_pred CE-EEEEeeccccc
Q 006791 215 IE-VILDVVYNHTN 227 (631)
Q Consensus 215 i~-VilDvV~NH~~ 227 (631)
+. |-+|+.++.-+
T Consensus 165 ~~~v~~dlI~GlPg 178 (400)
T PRK07379 165 IENFSLDLISGLPH 178 (400)
T ss_pred CCeEEEEeecCCCC
Confidence 98 77999997744
No 201
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=37.05 E-value=28 Score=34.15 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=40.7
Q ss_pred HhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHC
Q 006791 134 IQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGA 213 (631)
Q Consensus 134 ~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~ 213 (631)
........++|.+.|-++.-+.... + .. +. ...+++++++++||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~--------~-----~~--------------~~-------~~~~~i~~v~~~~~~~ 124 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALG--------S-----GN--------------ED-------EVIEEIAAVVEECHKY 124 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHH--------T-----TH--------------HH-------HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCceeeeeccccccc--------c-----cc--------------HH-------HHHHHHHHHHHHHhcC
Confidence 4557788899999999887663200 0 00 00 1248999999999999
Q ss_pred CCEEEEEeeccc
Q 006791 214 GIEVILDVVYNH 225 (631)
Q Consensus 214 Gi~VilDvV~NH 225 (631)
||+||+..++..
T Consensus 125 gl~vIlE~~l~~ 136 (236)
T PF01791_consen 125 GLKVILEPYLRG 136 (236)
T ss_dssp EEEEEEEECECH
T ss_pred CcEEEEEEecCc
Confidence 999999966655
No 202
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=36.93 E-value=3.6e+02 Score=28.40 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEeecccccC
Q 006791 199 ASWEFKEMVKALHGAGIEVILDVVYNHTNE 228 (631)
Q Consensus 199 ~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~ 228 (631)
.++.||+|++++|++|-++++-+. |.+.
T Consensus 81 ~i~~~~~l~~~vh~~G~~i~~QL~--H~G~ 108 (370)
T cd02929 81 DIRNLAAMTDAVHKHGALAGIELW--HGGA 108 (370)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecc--cCCC
Confidence 358899999999999999998875 8776
No 203
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=36.87 E-value=1.1e+02 Score=31.02 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHH
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 280 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~ 280 (631)
..++.-|++|+++|.+||+=+ + +..+..+ - ....-++.+.++
T Consensus 54 ~~~~~~i~~lk~~G~kViiS~-----G--G~~g~~~------------------------------~-~~~~~~~~~~~a 95 (294)
T cd06543 54 GWIKSDIAALRAAGGDVIVSF-----G--GASGTPL------------------------------A-TSCTSADQLAAA 95 (294)
T ss_pred hhHHHHHHHHHHcCCeEEEEe-----c--CCCCCcc------------------------------c-cCcccHHHHHHH
Confidence 678888999999999998821 1 1111000 0 012346677777
Q ss_pred HHHHHHHcCccEEEEeccccc
Q 006791 281 LRHWVVEYHVDGFRFDLASVL 301 (631)
Q Consensus 281 ~~~W~~e~giDGfR~D~~~~l 301 (631)
+.-.++.|++||+=||.-...
T Consensus 96 ~~~~i~~y~~dgiDfDiE~~~ 116 (294)
T cd06543 96 YQKVIDAYGLTHLDFDIEGGA 116 (294)
T ss_pred HHHHHHHhCCCeEEEeccCCc
Confidence 777888999999999955433
No 204
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=36.33 E-value=48 Score=34.58 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEeecccccCC
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNHTNEA 229 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH~~~~ 229 (631)
+-|+++.+.||+.||-||.|=||.|+.-+
T Consensus 219 ~HL~kiae~A~klgi~vIaDEVY~~~vfg 247 (447)
T KOG0259|consen 219 DHLKKIAETAKKLGIMVIADEVYGHTVFG 247 (447)
T ss_pred HHHHHHHHHHHHhCCeEEehhhcceeecC
Confidence 78999999999999999999999998764
No 205
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=35.71 E-value=45 Score=35.84 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEeec
Q 006791 201 WEFKEMVKALHGAGIEVILDVVY 223 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~ 223 (631)
-=+..+|+-||..||++|.+.|=
T Consensus 458 ~I~~hII~MAk~L~L~iVaEGVE 480 (524)
T COG4943 458 LIAPHIIEMAKSLGLKIVAEGVE 480 (524)
T ss_pred hhHHHHHHHHHHcCCcEEeeccc
Confidence 34778999999999999998773
No 206
>PLN02692 alpha-galactosidase
Probab=35.57 E-value=1.1e+02 Score=32.52 Aligned_cols=72 Identities=6% Similarity=-0.084 Sum_probs=43.5
Q ss_pred CCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCC----CCCC--CeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCcEE
Q 006791 552 DSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPP----PPKR--QWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSS 625 (631)
Q Consensus 552 ~~~vla~~r~~~~~~~~lvv~N~~~~~~~~~lp~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~ 625 (631)
...+-++.+...++..+++++|.++.+.++.++.. ..+. ..++|....... .......+++|+|+++
T Consensus 331 ~~~~~vW~k~l~~g~~aVal~N~~~~~~~i~~~~~~lgl~~~~~~~vrDLW~~~~~g-------~~~~~~~~~~v~~Hg~ 403 (412)
T PLN02692 331 EGDLEIWAGPLSGYRVALLLLNRGPWRNSITANWDDIGIPANSIVEARDLWEHKTLK-------QHFVGNLTATVDSHAC 403 (412)
T ss_pred cCCeEEEEEECCCCCEEEEEEECCCCCEEEEEeHHHhCCCCCCceEEEECCCCCccC-------ccccceEEEEECCceE
Confidence 35677888876645678889999988888776621 1111 234444221110 0011234689999999
Q ss_pred EEEEe
Q 006791 626 ILLEA 630 (631)
Q Consensus 626 ~vl~~ 630 (631)
++|+.
T Consensus 404 ~l~rl 408 (412)
T PLN02692 404 KMYIL 408 (412)
T ss_pred EEEEE
Confidence 99985
No 207
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=35.57 E-value=3e+02 Score=27.89 Aligned_cols=54 Identities=26% Similarity=0.236 Sum_probs=35.2
Q ss_pred CceEEEEecCcccCCCC--CCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCccc
Q 006791 103 DLVIYEMNVRAFTGDES--SGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEF 156 (631)
Q Consensus 103 ~~iiYei~v~~F~~~~~--~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~ 156 (631)
+-.||-|+|..=.+... +.-|.-.+=....+.+.+..+.+|||.+|-|-||-+.
T Consensus 31 ~dLI~PiFV~eg~~~~~~I~SMPgv~r~s~d~l~~~~~~~~~lGi~av~LFgvp~~ 86 (330)
T COG0113 31 NDLIYPIFVVEGENIKEEIPSMPGVYRYSLDRLVEEAEELVDLGIPAVILFGVPDD 86 (330)
T ss_pred HHeeEeEEEecCCCCccccCCCCCceeccHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 45678888753211000 1112222345777888899999999999999999754
No 208
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=35.55 E-value=46 Score=34.26 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEeeccc
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNH 225 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH 225 (631)
+++.+.++.+|++||.|.+++.+..
T Consensus 155 ~~~~~ai~~~~~~Gi~v~~~~i~G~ 179 (313)
T TIGR01210 155 EDFIRAAELARKYGAGVKAYLLFKP 179 (313)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEecC
Confidence 8999999999999999999999874
No 209
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=35.29 E-value=1.2e+02 Score=31.98 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=41.7
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
+.|..|+++|++.|.|-- ....+... -.+. +-.+. ++..+-++.+++.|
T Consensus 100 e~l~~l~~~G~~rvsiGv-qS~~d~~L---------------------~~l~-R~~~~--------~~~~~ai~~l~~~g 148 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGL-QAWQNSLL---------------------KYLG-RIHTF--------EEFLENYKLARKLG 148 (374)
T ss_pred HHHHHHHHcCCCEEEEEC-ccCCHHHH---------------------HHcC-CCCCH--------HHHHHHHHHHHHcC
Confidence 569999999999988754 33211110 1111 11233 88999999999999
Q ss_pred CE-EEEEeeccccc
Q 006791 215 IE-VILDVVYNHTN 227 (631)
Q Consensus 215 i~-VilDvV~NH~~ 227 (631)
+. |-+|+.++..+
T Consensus 149 ~~~v~~dli~GlPg 162 (374)
T PRK05799 149 FNNINVDLMFGLPN 162 (374)
T ss_pred CCcEEEEeecCCCC
Confidence 97 77999987644
No 210
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=35.04 E-value=95 Score=34.10 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=74.6
Q ss_pred CHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 006791 129 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 208 (631)
Q Consensus 129 ~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~ 208 (631)
|-..+++.++-.|+.||.-..|===+.- ++ ++--=+-.|++....+|++. +..||+
T Consensus 307 t~e~ile~vk~akk~gvE~FvlDDGwfg------~r--------ndd~~slGDWlv~seKfPsg----------iE~li~ 362 (687)
T COG3345 307 TEEEILENVKEAKKFGVELFVLDDGWFG------GR--------NDDLKSLGDWLVNSEKFPSG----------IEELIE 362 (687)
T ss_pred CHHHHHHHHHHHhhcCeEEEEEcccccc------cc--------Ccchhhhhceecchhhcccc----------HHHHHH
Confidence 4456777889999999655544221110 00 00012245677778888764 889999
Q ss_pred HHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 006791 209 ALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 288 (631)
Q Consensus 209 ~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~ 288 (631)
+.|++|+.-=+=+-+--++.++ ..+.. +|+|... ..|.......-+--++..+|.|..++.+-+...+..-
T Consensus 363 ~I~e~Gl~fGIWlePemvs~dS---dlfrq-----HPDWvvk-~~G~p~~~~Rnqyvl~~s~p~vv~~l~~~l~qll~~~ 433 (687)
T COG3345 363 AIAENGLIFGIWLEPEMVSEDS---DLFRQ-----HPDWVVK-VNGYPLMAGRNQYVLWLSNPIVVLDLSEDLVQLLLFH 433 (687)
T ss_pred HHHHcCCccceeecchhcccch---HHHhh-----CCCeEEe-cCCccccccccchhhhccChHHHHHhhhHHHHHHHhh
Confidence 9999999876666665555422 11211 2455554 2222222222223456777877777776655444333
Q ss_pred CccEEEEe
Q 006791 289 HVDGFRFD 296 (631)
Q Consensus 289 giDGfR~D 296 (631)
-||-+|-|
T Consensus 434 ~v~ylkwd 441 (687)
T COG3345 434 LVSYLKWD 441 (687)
T ss_pred hHHHHHHH
Confidence 44444444
No 211
>PRK05967 cystathionine beta-lyase; Provisional
Probab=34.57 E-value=44 Score=35.61 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEeeccc
Q 006791 199 ASWEFKEMVKALHGAGIEVILDVVYNH 225 (631)
Q Consensus 199 ~~~e~k~lV~~~H~~Gi~VilDvV~NH 225 (631)
.+.+++++++.||++|+-||+|-++..
T Consensus 164 ~v~dl~~I~~la~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 164 EMQDIPAIAEAAHRHGAIVMMDNTWAT 190 (395)
T ss_pred cHHHHHHHHHHHHHhCCEEEEECCccC
Confidence 359999999999999999999999853
No 212
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=34.31 E-value=62 Score=32.49 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=37.0
Q ss_pred HHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 006791 131 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 210 (631)
Q Consensus 131 ~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~ 210 (631)
..+.+.|+.++++|+++|+|.+- .. .. +..+.++ +. +++++|.+.+
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~-~~----------------~~-~~~~~~~--------~~--------~~~~~~~~~l 61 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVD-ET----------------DD-RLSRLDW--------SR--------EQRLALVNAI 61 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecC-Cc----------------cc-hhhccCC--------CH--------HHHHHHHHHH
Confidence 34677899999999999999531 11 00 1111221 22 7899999999
Q ss_pred HHCCCEEE
Q 006791 211 HGAGIEVI 218 (631)
Q Consensus 211 H~~Gi~Vi 218 (631)
.++||+|.
T Consensus 62 ~~~gl~i~ 69 (279)
T TIGR00542 62 IETGVRIP 69 (279)
T ss_pred HHcCCCce
Confidence 99999985
No 213
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=33.95 E-value=50 Score=34.11 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCccEEEEec
Q 006791 269 NHPVVMELILDSLRHWVVEYHVDGFRFDL 297 (631)
Q Consensus 269 ~~~~v~~~i~~~~~~W~~e~giDGfR~D~ 297 (631)
.++..|+.+++++.-|+++++.||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 46788999999999999999999999994
No 214
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=33.93 E-value=44 Score=29.66 Aligned_cols=38 Identities=13% Similarity=0.301 Sum_probs=27.2
Q ss_pred CCceeeecccccccccCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCCCC
Q 006791 470 QGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGR 532 (631)
Q Consensus 470 pGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~~~~~~~~Li~lR~~~~~l~~ 532 (631)
||||+|.-|+.+... ...+.+|++.|-+.-+..|.|..
T Consensus 87 PGIPll~pGE~it~~-------------------------~~~~i~yl~~l~~~~~~fpGf~~ 124 (136)
T PF03711_consen 87 PGIPLLVPGERITEE-------------------------TEEIIDYLLALQEFGAHFPGFEP 124 (136)
T ss_dssp TTS-SB-TTEEB-ST-------------------------THHHHHHHHHHHHHHTCSTTS--
T ss_pred CCCcEECCccccccc-------------------------hHHHHHHHHHHHHhCCcCcCCCC
Confidence 599999999987652 23789999999999888887764
No 215
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=33.68 E-value=54 Score=32.57 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=58.0
Q ss_pred ceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCC-----
Q 006791 104 LVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYS----- 178 (631)
Q Consensus 104 ~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~----- 178 (631)
.++.||-=+... .+...+...+..|+++||..- +=+++ -||.
T Consensus 121 ~l~lEitE~~~~------------~~~~~~~~~l~~L~~~G~~ia----lDDFG-----------------tG~ssl~~L 167 (256)
T COG2200 121 RLVLEITESALI------------DDLDTALALLRQLRELGVRIA----LDDFG-----------------TGYSSLSYL 167 (256)
T ss_pred eEEEEEeCchhh------------cCHHHHHHHHHHHHHCCCeEE----EECCC-----------------CCHHHHHHH
Confidence 678888554432 456667778999999997432 22221 1444
Q ss_pred ---CCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeeccc
Q 006791 179 ---TINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNH 225 (631)
Q Consensus 179 ---~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH 225 (631)
+.|+-.+|.+|-..-........=++.+|+-||+.||+||...|=+-
T Consensus 168 ~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGVEt~ 217 (256)
T COG2200 168 KRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGVETE 217 (256)
T ss_pred hhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeecCCH
Confidence 55666777777654211111124599999999999999999998544
No 216
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=33.63 E-value=27 Score=35.04 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEee
Q 006791 201 WEFKEMVKALHGAGIEVILDVV 222 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV 222 (631)
+-.++||++|++- |.|+||+-
T Consensus 137 E~vR~~I~~A~kV-IAIVMD~F 157 (284)
T PF07894_consen 137 EVVRRMIQQAQKV-IAIVMDVF 157 (284)
T ss_pred HHHHHHHHHhcce-eEEEeecc
Confidence 7799999999998 99999975
No 217
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=33.62 E-value=1.3e+02 Score=30.78 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=53.8
Q ss_pred CHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 006791 129 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 208 (631)
Q Consensus 129 ~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~ 208 (631)
+...=.+.+..+++.|.|+=.--|=-+ .|.-..+..+- |.+..++||+||+
T Consensus 13 s~e~R~~l~~f~~~~kmN~YiYAPKdD--------------------pyhr~~Wre~Y---------p~~el~~l~~L~~ 63 (306)
T PF07555_consen 13 SHEDRLDLIRFLGRYKMNTYIYAPKDD--------------------PYHRSKWREPY---------PEEELAELKELAD 63 (306)
T ss_dssp -HHHHHHHHHHHHHTT--EEEE--TT---------------------TTTTTTTTS------------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCceEEECCCCC--------------------hHHHhhhcccC---------CHHHHHHHHHHHH
Confidence 344445557888899999866555211 12222222221 1234588999999
Q ss_pred HHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 006791 209 ALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 288 (631)
Q Consensus 209 ~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e~ 288 (631)
+|++.|++.+.=+-+-. ++.+..++..+.|+.=+.... +.
T Consensus 64 ~a~~~~V~Fv~aisPg~---------------------------------------~~~~s~~~d~~~L~~K~~ql~-~l 103 (306)
T PF07555_consen 64 AAKANGVDFVYAISPGL---------------------------------------DICYSSEEDFEALKAKFDQLY-DL 103 (306)
T ss_dssp HHHHTT-EEEEEEBGTT---------------------------------------T--TSHHHHHHHHHHHHHHHH-CT
T ss_pred HHHHcCCEEEEEECccc---------------------------------------ccccCcHHHHHHHHHHHHHHH-hc
Confidence 99999988775443322 223344566666776666666 89
Q ss_pred CccEEEEe
Q 006791 289 HVDGFRFD 296 (631)
Q Consensus 289 giDGfR~D 296 (631)
||.-|-+-
T Consensus 104 Gvr~Fail 111 (306)
T PF07555_consen 104 GVRSFAIL 111 (306)
T ss_dssp T--EEEEE
T ss_pred CCCEEEEe
Confidence 99988763
No 218
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=33.44 E-value=2.2e+02 Score=31.27 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=44.3
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
.-|.-..|-|..+|+||+++--+.=-+.. -.| +..-|.. -...++=.++||
T Consensus 66 D~Yhry~EDI~Lm~elG~~~yRfSIsWsR--------------------I~P------~G~~~~~---N~~gl~~Y~~li 116 (477)
T PRK15014 66 DFYGHYKEDIKLFAEMGFKCFRTSIAWTR--------------------IFP------KGDEAQP---NEEGLKFYDDMF 116 (477)
T ss_pred CcccccHHHHHHHHHcCCCEEEeccccee--------------------ecc------CCCCCCC---CHHHHHHHHHHH
Confidence 34666777899999999999776433222 000 1000110 113357789999
Q ss_pred HHHHHCCCEEEEEeecccc
Q 006791 208 KALHGAGIEVILDVVYNHT 226 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~ 226 (631)
++|.++||+.|+.+. |.
T Consensus 117 d~l~~~GI~P~vTL~--H~ 133 (477)
T PRK15014 117 DELLKYNIEPVITLS--HF 133 (477)
T ss_pred HHHHHcCCEEEEEee--CC
Confidence 999999999998874 64
No 219
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=33.29 E-value=5.4e+02 Score=26.26 Aligned_cols=131 Identities=21% Similarity=0.237 Sum_probs=74.0
Q ss_pred CceEEEEecCcccCCCC--CCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCC
Q 006791 103 DLVIYEMNVRAFTGDES--SGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTI 180 (631)
Q Consensus 103 ~~iiYei~v~~F~~~~~--~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~ 180 (631)
+--||-|+|..=.+... +..+...+=+...+.+.+..+.++||++|-|-|+-+. .+ + .++-.|++.
T Consensus 21 ~dLI~PlFV~eg~~~~~~I~sMPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~--Kd------~----~gs~A~~~~ 88 (314)
T cd00384 21 DDLIYPLFVVEGIDEKEEISSMPGVYRLSVDSLVEEAEELADLGIRAVILFGIPEH--KD------E----IGSEAYDPD 88 (314)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEECCCCC--CC------C----CcccccCCC
Confidence 45678887754211110 1122223346788999999999999999999999432 10 0 111122222
Q ss_pred CCCCCCCCCCCCCCCCCchH-HHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCcccc
Q 006791 181 NFFSPMSRYAAGGGGPLKAS-WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNY 259 (631)
Q Consensus 181 d~~~~d~~yGt~~~~~~~~~-~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~ 259 (631)
. .+ ...+.+-++. -.|-||-||.+......++ .|+-.
T Consensus 89 g-----------------~v~~air~iK~~~--p~l~vi~DvcLc~YT~hGH--------cGil~--------------- 126 (314)
T cd00384 89 G-----------------IVQRAIRAIKEAV--PELVVITDVCLCEYTDHGH--------CGILK--------------- 126 (314)
T ss_pred C-----------------hHHHHHHHHHHhC--CCcEEEEeeeccCCCCCCc--------ceecc---------------
Confidence 1 11 2233333332 3799999999987654221 11100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHcCccEE
Q 006791 260 AGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGF 293 (631)
Q Consensus 260 ~~~~~~ln~~~~~v~~~i~~~~~~W~~e~giDGf 293 (631)
. + .-.|.+..+.+.+...-.. +-|+|-.
T Consensus 127 ~--~---~idND~Tl~~L~k~Als~A-~AGADiV 154 (314)
T cd00384 127 D--D---YVDNDATLELLAKIAVSHA-EAGADIV 154 (314)
T ss_pred C--C---cCccHHHHHHHHHHHHHHH-HcCCCee
Confidence 0 0 1245677888888888877 6788754
No 220
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=33.28 E-value=1.2e+02 Score=33.09 Aligned_cols=25 Identities=16% Similarity=0.140 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEeeccc
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNH 225 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH 225 (631)
++..+.++.||+.||.|..++++..
T Consensus 323 ~~~~~~i~~~~~~Gi~v~~~~IiGl 347 (472)
T TIGR03471 323 EIARRFTRDCHKLGIKVHGTFILGL 347 (472)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEeC
Confidence 7899999999999999999999865
No 221
>PRK15447 putative protease; Provisional
Probab=33.17 E-value=99 Score=31.61 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 006791 201 WEFKEMVKALHGAGIEVIL 219 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~Vil 219 (631)
+++++.|+.||++|.+|++
T Consensus 48 ~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 48 GDWLELAERLAAAGKEVVL 66 (301)
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999988
No 222
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=33.13 E-value=1.5e+02 Score=31.62 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=42.9
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
++|..|+++|||.|.|-. ..+++... -.+ .+.-+. ++..+.++.|++.+
T Consensus 112 e~l~~l~~~GvnRiSiGv-QS~~d~~L---------------------~~l-gR~h~~--------~~~~~ai~~~~~~~ 160 (390)
T PRK06582 112 EKFKAFKLAGINRVSIGV-QSLKEDDL---------------------KKL-GRTHDC--------MQAIKTIEAANTIF 160 (390)
T ss_pred HHHHHHHHCCCCEEEEEC-CcCCHHHH---------------------HHc-CCCCCH--------HHHHHHHHHHHHhC
Confidence 679999999999999754 33211111 111 122222 78888889999999
Q ss_pred CEEEEEeeccccc
Q 006791 215 IEVILDVVYNHTN 227 (631)
Q Consensus 215 i~VilDvV~NH~~ 227 (631)
+.|-+|+.++.-+
T Consensus 161 ~~v~~DlI~GlPg 173 (390)
T PRK06582 161 PRVSFDLIYARSG 173 (390)
T ss_pred CcEEEEeecCCCC
Confidence 9999999998744
No 223
>PRK11059 regulatory protein CsrD; Provisional
Probab=33.10 E-value=66 Score=36.78 Aligned_cols=100 Identities=11% Similarity=0.018 Sum_probs=61.1
Q ss_pred CCceEEEEecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCC
Q 006791 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTIN 181 (631)
Q Consensus 102 ~~~iiYei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d 181 (631)
.+.++.|+.-.... .+...+...+..|+++||...- =+++... . ...+-..-+.|
T Consensus 516 ~~~l~~Ei~E~~~~------------~~~~~~~~~l~~L~~~G~~iai----ddfG~g~------~---s~~~L~~l~~d 570 (640)
T PRK11059 516 RKRLIFELAEADVC------------QHISRLRPVLRMLRGLGCRLAV----DQAGLTV------V---STSYIKELNVE 570 (640)
T ss_pred cceEEEEEechhhh------------cCHHHHHHHHHHHHHCCCEEEE----ECCCCCc------c---cHHHHHhCCCC
Confidence 36788898655443 4577788889999999996532 1221000 0 00111223567
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccc
Q 006791 182 FFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT 226 (631)
Q Consensus 182 ~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~ 226 (631)
|-.+|++|-..-........-++.+++.||..||+||...|=+..
T Consensus 571 ~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viAegVEt~~ 615 (640)
T PRK11059 571 LIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFATGVESRE 615 (640)
T ss_pred EEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEEEEeCCHH
Confidence 777777765431100011134899999999999999999987653
No 224
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.96 E-value=2.6e+02 Score=28.67 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=46.8
Q ss_pred CHHHHHhh----chHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCch
Q 006791 129 SYLGLIQK----IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSP-----MSRYAAGGGGPLKA 199 (631)
Q Consensus 129 ~~~gl~~~----LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~-----d~~yGt~~~~~~~~ 199 (631)
....+++. ....++.|++.|+|..- +||-...|.++ +-.||.. ...|
T Consensus 135 ei~~~i~~~~~aA~~a~~aGfDgveih~~---------------------~gyL~~qFlsp~~n~R~d~yGgs---~enr 190 (327)
T cd02803 135 EIEQIIEDFAAAARRAKEAGFDGVEIHGA---------------------HGYLLSQFLSPYTNKRTDEYGGS---LENR 190 (327)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcch---------------------hhhHHHHhcCccccCCCcccCCC---HHHH
Confidence 34444443 46778899999999752 36655555444 2356643 4456
Q ss_pred HHHHHHHHHHHHHC---CCEEEEEeeccc
Q 006791 200 SWEFKEMVKALHGA---GIEVILDVVYNH 225 (631)
Q Consensus 200 ~~e~k~lV~~~H~~---Gi~VilDvV~NH 225 (631)
..-+.+.|+++.+. ++.|.+++-...
T Consensus 191 ~r~~~eii~avr~~~g~d~~i~vris~~~ 219 (327)
T cd02803 191 ARFLLEIVAAVREAVGPDFPVGVRLSADD 219 (327)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEechhc
Confidence 66677888888775 677888876543
No 225
>PRK09028 cystathionine beta-lyase; Provisional
Probab=32.93 E-value=50 Score=35.22 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEeecc
Q 006791 198 KASWEFKEMVKALHGAGIEVILDVVYN 224 (631)
Q Consensus 198 ~~~~e~k~lV~~~H~~Gi~VilDvV~N 224 (631)
-.+.+++++++.||++|+-||+|-++.
T Consensus 160 g~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 160 MEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 335999999999999999999998874
No 226
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=32.32 E-value=79 Score=36.80 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=42.5
Q ss_pred CCCCCCC-----HHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChH-HHHHHHhccccCCCeEeeccCCC
Q 006791 264 NTLNCNH-----PVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP-LIRAIAKDAILSRCKIIAEPWDC 337 (631)
Q Consensus 264 ~~ln~~~-----~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~-~l~~i~~~~~~~~~~li~E~w~~ 337 (631)
-.|+|.+ |-+++.|.+....=.+ =+||+|+|.++.-+.. ..+ +|...+ .+.|+++++||-+..
T Consensus 499 VKLryG~kpeDsPyLWq~M~kY~e~tAr--iFdG~RlDNcHsTPlH-------VaEylLd~AR--k~nPnlYVvAELFtg 567 (1521)
T KOG3625|consen 499 VKLRYGNKPEDSPYLWQHMKKYTEITAR--IFDGVRLDNCHSTPLH-------VAEYLLDAAR--KLNPNLYVVAELFTG 567 (1521)
T ss_pred eeeccCCCcccChHHHHHHHHHHHHHHH--HhcceeeccCCCCchh-------HHHHHHHHHH--hcCCCeEEEeeeccC
Confidence 3566654 7788888877766554 4699999977654322 222 333333 478999999997765
Q ss_pred C
Q 006791 338 R 338 (631)
Q Consensus 338 ~ 338 (631)
.
T Consensus 568 S 568 (1521)
T KOG3625|consen 568 S 568 (1521)
T ss_pred C
Confidence 3
No 227
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=32.23 E-value=1.4e+02 Score=31.66 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=42.6
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
++|.-|+++|||.|.|- |..+++... -.+.... +. ++..+.++.+++.+
T Consensus 105 e~L~~l~~~GvnrislG-vQS~~d~vL---------------------~~l~R~~-~~--------~~~~~ai~~~~~~~ 153 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLG-VQALNDADL---------------------RFLGRLH-SV--------AEALAAIDLAREIF 153 (380)
T ss_pred HHHHHHHHcCCCEEEEe-cccCCHHHH---------------------HHcCCCC-CH--------HHHHHHHHHHHHhC
Confidence 67999999999999974 333321111 1111111 22 78888999999999
Q ss_pred CEEEEEeeccccc
Q 006791 215 IEVILDVVYNHTN 227 (631)
Q Consensus 215 i~VilDvV~NH~~ 227 (631)
+.|-+|+.++--+
T Consensus 154 ~~v~~dli~GlPg 166 (380)
T PRK09057 154 PRVSFDLIYARPG 166 (380)
T ss_pred ccEEEEeecCCCC
Confidence 9999999987644
No 228
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=31.70 E-value=94 Score=32.84 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=70.6
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCC-----CCCCCCC--CCCCCCCCCCCCCCCCCCC--------
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRN-----PRDHMVN--TWGYSTINFFSPMSRYAAG-------- 192 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~-----~~~~~~~--~~GY~~~d~~~~d~~yGt~-------- 192 (631)
|-+.+|...+--|-+-|.+.|-+-|.|+.-.......++ +....++ +..=.+.|++.++..+-..
T Consensus 101 GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~nt 180 (420)
T KOG0257|consen 101 GANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNT 180 (420)
T ss_pred CchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeC
Confidence 778888888888888899999999998862221110000 0000011 1223355666555555433
Q ss_pred CCCCC---chHHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcc
Q 006791 193 GGGPL---KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYT 236 (631)
Q Consensus 193 ~~~~~---~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~ 236 (631)
|.+|. -..+||+++++-|.++|.=||-|=||.|...++..|+-+
T Consensus 181 PhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~ 227 (420)
T KOG0257|consen 181 PHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRI 227 (420)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceee
Confidence 22333 245899999999999999999999999988766556544
No 229
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=31.68 E-value=39 Score=35.90 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=26.5
Q ss_pred CCCCCchHHHHHHHHHHHHHCCCEEEEEeec
Q 006791 193 GGGPLKASWEFKEMVKALHGAGIEVILDVVY 223 (631)
Q Consensus 193 ~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~ 223 (631)
|.+|.-++.|++++++.||+.|+.||+|=.+
T Consensus 158 PsNP~l~v~DI~~i~~~A~~~g~~vvVDNTf 188 (396)
T COG0626 158 PSNPLLEVPDIPAIARLAKAYGALVVVDNTF 188 (396)
T ss_pred CCCcccccccHHHHHHHHHhcCCEEEEECCc
Confidence 5667777899999999999999999999443
No 230
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=31.33 E-value=2.7e+02 Score=28.11 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=75.3
Q ss_pred HHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 006791 131 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 210 (631)
Q Consensus 131 ~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~ 210 (631)
+.+.+++.-+|+-|+|++-+ +..+ .++.--|...|-+ ....++- ...-|++-+|+.|
T Consensus 77 k~~de~fk~ikdn~~Na~Vi----D~Kd------------d~G~lty~s~d~~--~~~~~sv-----~~f~Di~~~iKka 133 (400)
T COG1306 77 KRLDELFKLIKDNNINAFVI----DVKD------------DYGELTYPSSDEI--NKYTKSV-----NKFKDIEPVIKKA 133 (400)
T ss_pred hHHHHHHHHHHhCCCCEEEE----EecC------------CCccEeccccchh--hhhhhcc-----ccccccHHHHHHH
Confidence 34556688999999999864 2200 0222334444422 2222322 1247899999999
Q ss_pred HHCCCEEEEEeecc-cccCCCCCCCccc-ccCCCCCCcC--eeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 006791 211 HGAGIEVILDVVYN-HTNEADDANPYTT-SFRGIDNKVY--YMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVV 286 (631)
Q Consensus 211 H~~Gi~VilDvV~N-H~~~~~~~~~~~~-~~~~~~~~~y--y~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~ 286 (631)
.++||-+|.-+|.= .+--. ..+|+-. -+.+ +..| |....-........| ++--++.+++|=+.+++--+
T Consensus 134 Ke~giY~IARiVvFKD~~l~-~~n~fk~av~~~--gKpw~~~~ngaLrKe~~~ehW---Vd~y~~~~WeYNvtIAKEa~- 206 (400)
T COG1306 134 KENGIYAIARIVVFKDTILA-KENPFKIAVYKD--GKPWKAFTNGALRKESDGEHW---VDAYDKNLWEYNVTIAKEAA- 206 (400)
T ss_pred HhcCeEEEEEEEEeeeeeEE-eecCceEEEEcC--CCcchhhhcccccccccceee---ecccchhhhhhhHHHHHHHH-
Confidence 99999999988742 21100 0111000 0000 0000 000000000000011 23345889999999999888
Q ss_pred HcCccEEEEeccccc
Q 006791 287 EYHVDGFRFDLASVL 301 (631)
Q Consensus 287 e~giDGfR~D~~~~l 301 (631)
+||+|-+.||-+.+-
T Consensus 207 ~fGfdEiQFDYIRFP 221 (400)
T COG1306 207 KFGFDEIQFDYIRFP 221 (400)
T ss_pred HcCccceeeeEEEcc
Confidence 899999999966543
No 231
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=30.88 E-value=58 Score=33.54 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCccEEEEec
Q 006791 269 NHPVVMELILDSLRHWVVEYHVDGFRFDL 297 (631)
Q Consensus 269 ~~~~v~~~i~~~~~~W~~e~giDGfR~D~ 297 (631)
+++..|+.+++++.-+++++|.||+-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 46889999999999999999999999983
No 232
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=30.75 E-value=40 Score=35.64 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=26.2
Q ss_pred CCCCCchHHHHHHHHHHHHHCCCEEEEEeec
Q 006791 193 GGGPLKASWEFKEMVKALHGAGIEVILDVVY 223 (631)
Q Consensus 193 ~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~ 223 (631)
|.+|.-.+-|++++++-||+.|+-||+|=-+
T Consensus 171 PsNPll~v~DI~~l~~la~~~g~~vvVDnTf 201 (409)
T KOG0053|consen 171 PSNPLLKVPDIEKLARLAHKYGFLVVVDNTF 201 (409)
T ss_pred CCCCccccccHHHHHHHHhhCCCEEEEeCCc
Confidence 5666666789999999999999999999443
No 233
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=30.23 E-value=57 Score=33.30 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCccEEEEec
Q 006791 269 NHPVVMELILDSLRHWVVEYHVDGFRFDL 297 (631)
Q Consensus 269 ~~~~v~~~i~~~~~~W~~e~giDGfR~D~ 297 (631)
.++..|+.+++++.-+++++|+||+-||-
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDW 116 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDW 116 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeecc
Confidence 56888999999999999999999999993
No 234
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=29.69 E-value=63 Score=33.41 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHh
Q 006791 269 NHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 321 (631)
Q Consensus 269 ~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~ 321 (631)
.++..|+.+++++.-|+++++.||+-||--..-... ........++++++.
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~--~d~~~~~~ll~~lr~ 137 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARG--DDRENYTALLKELRE 137 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCc--cHHHHHHHHHHHHHH
Confidence 457889999999999999999999999943321100 001123456777765
No 235
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=29.37 E-value=37 Score=20.42 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=13.7
Q ss_pred HHHHHhhchHHHHcCCc
Q 006791 130 YLGLIQKIPHLLELGIN 146 (631)
Q Consensus 130 ~~gl~~~LdyLk~LGvt 146 (631)
-..+..+++||+++|++
T Consensus 15 ~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 15 EKKLKPKVEFLKELGFS 31 (31)
T ss_pred HHHhhHHHHHHHHcCCC
Confidence 45567789999999985
No 236
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=29.26 E-value=62 Score=33.00 Aligned_cols=49 Identities=8% Similarity=0.234 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHh
Q 006791 269 NHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 321 (631)
Q Consensus 269 ~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~ 321 (631)
+++..|+.+++++..+++++|.||+-||--..-..+ ......++++++.
T Consensus 84 ~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d----~~~~~~fl~eL~~ 132 (298)
T cd06549 84 ADPSARAKFIANIAAYLERNQADGIVLDFEELPADD----LPKYVAFLSELRR 132 (298)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhH----HHHHHHHHHHHHH
Confidence 568899999999999999999999999964321111 1123457777765
No 237
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.99 E-value=26 Score=32.10 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEee
Q 006791 200 SWEFKEMVKALHGAGIEVILDVV 222 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilDvV 222 (631)
++++++||+.||++|+++-|---
T Consensus 166 ~e~l~eFvd~Ah~hGL~~AlAGs 188 (235)
T COG1891 166 EEELEEFVDLAHEHGLEVALAGS 188 (235)
T ss_pred HHHHHHHHHHHHHcchHHHhccc
Confidence 48999999999999999877544
No 238
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=28.86 E-value=60 Score=32.09 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEe
Q 006791 201 WEFKEMVKALHGAGIEVILDV 221 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDv 221 (631)
+++++|++.||+.||.|+..|
T Consensus 143 ~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 143 EQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHcCCeeEEEE
Confidence 679999999999999999986
No 239
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=28.54 E-value=3.7e+02 Score=27.98 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEeecccccC
Q 006791 199 ASWEFKEMVKALHGAGIEVILDVVYNHTNE 228 (631)
Q Consensus 199 ~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~ 228 (631)
.+..||+|++++|+.|-++++-+ +|.+.
T Consensus 79 ~i~~~r~l~d~vh~~G~~i~~QL--~H~G~ 106 (337)
T PRK13523 79 HIEGLHKLVTFIHDHGAKAAIQL--AHAGR 106 (337)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEc--cCCCC
Confidence 46889999999999999998886 77665
No 240
>PRK05939 hypothetical protein; Provisional
Probab=28.53 E-value=63 Score=34.47 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEeec
Q 006791 200 SWEFKEMVKALHGAGIEVILDVVY 223 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilDvV~ 223 (631)
+.+++++++.||++|+.||+|-++
T Consensus 147 v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 147 VADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHhHHHHHHHHHHcCCEEEEECCc
Confidence 489999999999999999999765
No 241
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=28.39 E-value=1.6e+02 Score=31.31 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=42.7
Q ss_pred hhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 006791 135 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 214 (631)
Q Consensus 135 ~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~G 214 (631)
++|..|+++|||.|.|- |..+++... -.+.... +. ++..+.|+.+++.+
T Consensus 123 e~L~~l~~~GvnrisiG-vQS~~~~~L---------------------~~l~R~~-~~--------~~~~~~i~~~~~~~ 171 (394)
T PRK08898 123 EKFAQFRASGVNRLSIG-IQSFNDAHL---------------------KALGRIH-DG--------AEARAAIEIAAKHF 171 (394)
T ss_pred HHHHHHHHcCCCeEEEe-cccCCHHHH---------------------HHhCCCC-CH--------HHHHHHHHHHHHhC
Confidence 67999999999999974 333322111 1111111 22 78888899999999
Q ss_pred CEEEEEeeccccc
Q 006791 215 IEVILDVVYNHTN 227 (631)
Q Consensus 215 i~VilDvV~NH~~ 227 (631)
..|-+|++++.-+
T Consensus 172 ~~v~~dlI~GlPg 184 (394)
T PRK08898 172 DNFNLDLMYALPG 184 (394)
T ss_pred CceEEEEEcCCCC
Confidence 9999999998754
No 242
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=28.38 E-value=90 Score=29.95 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=33.4
Q ss_pred hchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCC
Q 006791 136 KIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGI 215 (631)
Q Consensus 136 ~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi 215 (631)
-|.+.++|||++|+++- |.-+.+ + ++.++||+.+-+.|.
T Consensus 95 yl~e~~~lGfe~iEIS~-----------------------G~i~m~---------~---------eek~~lIe~a~d~Gf 133 (258)
T COG1809 95 YLNEAKELGFEAIEISN-----------------------GTIPMS---------T---------EEKCRLIERAVDEGF 133 (258)
T ss_pred HHHHHHHcCccEEEecC-----------------------Ceeecc---------h---------HHHHHHHHHHHhccc
Confidence 37788999999999753 222221 2 899999999999999
Q ss_pred EEEEE
Q 006791 216 EVILD 220 (631)
Q Consensus 216 ~VilD 220 (631)
.|.-.
T Consensus 134 ~vlsE 138 (258)
T COG1809 134 MVLSE 138 (258)
T ss_pred EEehh
Confidence 87644
No 243
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=28.19 E-value=63 Score=33.90 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCccEEEEec
Q 006791 269 NHPVVMELILDSLRHWVVEYHVDGFRFDL 297 (631)
Q Consensus 269 ~~~~v~~~i~~~~~~W~~e~giDGfR~D~ 297 (631)
.++..|+.+++++.-|++++++||+-||-
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDw 120 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDW 120 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeee
Confidence 45778999999999999999999999994
No 244
>PLN02803 beta-amylase
Probab=28.14 E-value=2.8e+02 Score=30.52 Aligned_cols=85 Identities=13% Similarity=0.245 Sum_probs=56.4
Q ss_pred CCceEEEEecCcccCCCCCCCCCCCCcCH---HHHHhhchHHHHcCCceEEECCCcc-cchhhhhhcCCCCCCCCCCCCC
Q 006791 102 KDLVIYEMNVRAFTGDESSGLDPEIRGSY---LGLIQKIPHLLELGINAVELLPVFE-FDEMEFQRRRNPRDHMVNTWGY 177 (631)
Q Consensus 102 ~~~iiYei~v~~F~~~~~~~~~~~~~G~~---~gl~~~LdyLk~LGvt~I~L~Pi~~-~~~~~~~~~~~~~~~~~~~~GY 177 (631)
.-.-+|=+.+-+.-..+ |++ ++|...|..||.+||+.|.+ +|+= ..+. .+|. .++|
T Consensus 84 ~~vpvyVMlPLd~V~~~---------~~~~~~~~l~~~L~~LK~~GVdGVmv-DVWWGiVE~-----~~p~---~YdW-- 143 (548)
T PLN02803 84 SGVPVFVMLPLDTVTMG---------GNLNKPRAMNASLMALRSAGVEGVMV-DAWWGLVEK-----DGPM---KYNW-- 143 (548)
T ss_pred CceeEEEEeecceeccC---------CcccCHHHHHHHHHHHHHcCCCEEEE-Eeeeeeecc-----CCCC---cCCc--
Confidence 44567777765543221 455 78899999999999999975 3321 1110 0111 1122
Q ss_pred CCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEeecccccCC
Q 006791 178 STINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 229 (631)
Q Consensus 178 ~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~ 229 (631)
...++|++.+.+.|++|..=+-|.-++.+
T Consensus 144 -----------------------sgY~~l~~mvr~~GLKlq~vmSFHqCGGN 172 (548)
T PLN02803 144 -----------------------EGYAELVQMVQKHGLKLQVVMSFHQCGGN 172 (548)
T ss_pred -----------------------HHHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 67888999999999999988888777653
No 245
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=27.67 E-value=4e+02 Score=29.27 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=45.5
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
.-|.-..+-|+-+|+||+++--++=-+.- --|. |. -|.. -...++=.++||
T Consensus 70 d~Yhry~eDi~Lm~~lG~~aYRfSIsWsR--------I~P~-------G~-----------~~~~---N~~gl~~Y~~lI 120 (478)
T PRK09593 70 DMYHHYKEDIALFAEMGFKTYRMSIAWTR--------IFPK-------GD-----------ELEP---NEAGLQFYEDIF 120 (478)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEecchhh--------cccC-------CC-----------CCCC---CHHHHHHHHHHH
Confidence 46778888899999999999876543322 0010 11 0110 113356689999
Q ss_pred HHHHHCCCEEEEEeecccc
Q 006791 208 KALHGAGIEVILDVVYNHT 226 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~ 226 (631)
++|+++||+.|+-+ .|.
T Consensus 121 d~L~~~GI~P~VTL--~H~ 137 (478)
T PRK09593 121 KECHKYGIEPLVTI--THF 137 (478)
T ss_pred HHHHHcCCEEEEEe--ccc
Confidence 99999999999765 464
No 246
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.60 E-value=5.7e+02 Score=25.35 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=35.2
Q ss_pred HHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 006791 133 LIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 212 (631)
Q Consensus 133 l~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~ 212 (631)
+.+.++-++++|+++|+|.+- +. +.+ .. ...+ +. ++++++.+.+.+
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~-~~------------------~~~-----~~-~~~~-~~--------~~~~~l~~~l~~ 68 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVD-ES------------------DER-----LA-RLDW-SR--------EQRLALVNALVE 68 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecC-cc------------------ccc-----hh-ccCC-CH--------HHHHHHHHHHHH
Confidence 456788999999999999531 11 000 00 0011 22 778999999999
Q ss_pred CCCEEEE
Q 006791 213 AGIEVIL 219 (631)
Q Consensus 213 ~Gi~Vil 219 (631)
.||.|..
T Consensus 69 ~gl~i~~ 75 (283)
T PRK13209 69 TGFRVNS 75 (283)
T ss_pred cCCceeE
Confidence 9999864
No 247
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=27.56 E-value=88 Score=30.70 Aligned_cols=19 Identities=16% Similarity=0.171 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHCCCEEE
Q 006791 200 SWEFKEMVKALHGAGIEVI 218 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~Vi 218 (631)
.++++++.+.+.+.|++|+
T Consensus 227 ~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 227 KETMERVKGILEQYGHKVM 245 (246)
T ss_pred HHHHHHHHHHHHHcCCccc
Confidence 3889999999999998874
No 248
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.84 E-value=1.6e+02 Score=30.83 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 006791 201 WEFKEMVKALHGAGIEVIL 219 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~Vil 219 (631)
+++++|.+.+.++||.|.+
T Consensus 306 e~i~~f~~~L~~~Gi~vtv 324 (345)
T PRK14457 306 KRIQAFQRVLEQRGVAVSV 324 (345)
T ss_pred HHHHHHHHHHHHCCCeEEE
Confidence 7899999999999999863
No 249
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=26.81 E-value=1.7e+02 Score=30.56 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 006791 201 WEFKEMVKALHGAGIEVIL 219 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~Vil 219 (631)
+++++|.+.+.++||.|.+
T Consensus 306 e~v~~f~~~L~~~Gi~vti 324 (347)
T PRK14453 306 GQIKQFCSTLKSAGISVTV 324 (347)
T ss_pred HHHHHHHHHHHHCCCcEEE
Confidence 8899999999999998863
No 250
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=26.64 E-value=75 Score=32.79 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHh
Q 006791 270 HPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 321 (631)
Q Consensus 270 ~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~ 321 (631)
++.-|+.+++++.-++++||+||+-||.-................++++++.
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~ 147 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRK 147 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhh
Confidence 4667899999999999999999999995443221000001123456777764
No 251
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.58 E-value=1.3e+02 Score=31.48 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 006791 201 WEFKEMVKALHGAGIEVIL 219 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~Vil 219 (631)
+.+.+|.+.+.++||.|.+
T Consensus 313 e~l~~f~~~L~~~gi~v~i 331 (356)
T PRK14455 313 EDIFAFEDTLKKNGVNCTI 331 (356)
T ss_pred HHHHHHHHHHHHCCCcEEE
Confidence 7888999999999999864
No 252
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=25.66 E-value=2.6e+02 Score=30.65 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=65.8
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
.-|.-..+-+.-+|+||+++--+.=-+.- --|. |... + -...++=.++||
T Consensus 50 d~yhry~eDi~L~~~lG~~~yRfSIsWsR--------I~P~-------g~~~-----~----------N~~gl~~Y~~li 99 (467)
T TIGR01233 50 DFYHKYPVDLELAEEYGVNGIRISIAWSR--------IFPT-------GYGE-----V----------NEKGVEFYHKLF 99 (467)
T ss_pred chhhhHHHHHHHHHHcCCCEEEEecchhh--------ccCC-------CCCC-----c----------CHHHHHHHHHHH
Confidence 46777888899999999999876543322 0010 1110 1 112356689999
Q ss_pred HHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 006791 208 KALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVE 287 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~e 287 (631)
++|.++||+.|+-+ .|.. .|.. .. ...| +.++++.+++.+-++.-.++
T Consensus 100 d~l~~~GI~P~VTL--~H~d-----lP~~-----------L~--------~~GG------W~n~~~v~~F~~YA~~~f~~ 147 (467)
T TIGR01233 100 AECHKRHVEPFVTL--HHFD-----TPEA-----------LH--------SNGD------FLNRENIEHFIDYAAFCFEE 147 (467)
T ss_pred HHHHHcCCEEEEec--cCCC-----CcHH-----------HH--------HcCC------CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999654 5743 2321 10 0112 35688999999998888888
Q ss_pred cCcc
Q 006791 288 YHVD 291 (631)
Q Consensus 288 ~giD 291 (631)
|| |
T Consensus 148 fg-d 150 (467)
T TIGR01233 148 FP-E 150 (467)
T ss_pred hC-C
Confidence 87 5
No 253
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=25.64 E-value=66 Score=34.18 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=21.5
Q ss_pred CCCCCchHHHHHHHHHHHHHCC-CEEEEEeec
Q 006791 193 GGGPLKASWEFKEMVKALHGAG-IEVILDVVY 223 (631)
Q Consensus 193 ~~~~~~~~~e~k~lV~~~H~~G-i~VilDvV~ 223 (631)
|.+|.-.+-|++++++.||++| +-||+|=-+
T Consensus 149 psNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~ 180 (386)
T PF01053_consen 149 PSNPTLEVPDLEAIAKLAKEHGDILVVVDNTF 180 (386)
T ss_dssp SBTTTTB---HHHHHHHHHHTTT-EEEEECTT
T ss_pred CCCcccccccHHHHHHHHHHhCCceEEeeccc
Confidence 4445555689999999999999 999999443
No 254
>PRK07050 cystathionine beta-lyase; Provisional
Probab=25.41 E-value=78 Score=33.74 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEeeccc
Q 006791 200 SWEFKEMVKALHGAGIEVILDVVYNH 225 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilDvV~NH 225 (631)
+.+++++++.||++|+.||+|-.+..
T Consensus 166 ~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 166 VPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred HhhHHHHHHHHHHcCCEEEEECCccc
Confidence 48999999999999999999999765
No 255
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=24.59 E-value=2.8e+02 Score=23.29 Aligned_cols=78 Identities=10% Similarity=0.122 Sum_probs=36.2
Q ss_pred CcEEEEEEecCC-CCeEEEEEeCC-CCcEEEEcCCCCCCCCeEEEE--eCCCCCC---CCCCCC--CC-CCCCCeEEEcC
Q 006791 553 SKFLAFTLHDNN-GADIYLAFNAH-DFFVKVSLPPPPPKRQWFRVV--DTNLESP---DDIVPE--GA-AGTGSTYNLSP 622 (631)
Q Consensus 553 ~~vla~~r~~~~-~~~~lvv~N~~-~~~~~~~lp~~~~~~~~~~~~--~~~~~~~---~~~~~~--~~-~~~~~~~~l~p 622 (631)
...+++.|+..+ +.=++-.+|.. ....+++|+....+..|...+ |...... ..+... .+ .....++.|.|
T Consensus 14 GeyvviARr~~~G~~Wyvg~in~~~~r~i~l~L~FL~~g~~y~a~i~~D~~~a~~~~~~~~~~~~~~v~~~~~l~i~l~~ 93 (103)
T PF14509_consen 14 GEYVVIARRKRDGDDWYVGGINGEDARTITLPLSFLDKGKKYTATIYTDGPDADYTNPEAYKIETRKVTSGDKLTITLAP 93 (103)
T ss_dssp TTEEEEEEEETTTTEEEEEEEE-TT-EEEEEEGCCS-TT--EEEEEEEE-TTTCTTCTT-EEEEEEEE-TT-EEEEEE-T
T ss_pred ceEEEEEEEcCCCCCEEEEEeeCCCceEEEEECcccCCCCcEEEEEEEeCCcccccCCcceEEEEEEECCCCEEEEEEeC
Confidence 456777777632 44566678876 445677777665554555333 4442211 111111 11 12234678999
Q ss_pred cEEEEEEe
Q 006791 623 YSSILLEA 630 (631)
Q Consensus 623 ~s~~vl~~ 630 (631)
.+..|++.
T Consensus 94 ~GG~vi~~ 101 (103)
T PF14509_consen 94 GGGFVIRI 101 (103)
T ss_dssp T-EEEEEE
T ss_pred CCcEEEEE
Confidence 88777653
No 256
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=24.58 E-value=1.5e+02 Score=29.55 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=40.4
Q ss_pred HHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHH
Q 006791 203 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLR 282 (631)
Q Consensus 203 ~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~ 282 (631)
...|-++|.+.||+.+.--+++-++.. ..+.+++||++-+-
T Consensus 152 r~~M~~~C~~lGi~fv~~taPDP~sd~---------------------------------------gv~gaqqfIlE~vp 192 (275)
T PF12683_consen 152 RDIMEEACKDLGIKFVEVTAPDPTSDV---------------------------------------GVAGAQQFILEDVP 192 (275)
T ss_dssp HHHHHHHHHHCT--EEEEEE---SSTC---------------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCCC---------------------------------------CcHHHHHHHHHHHH
Confidence 445556677777777666666655531 12569999999999
Q ss_pred HHHHHcCccEEEEecccccccCCCCCCCCChHHHHHHHh
Q 006791 283 HWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 321 (631)
Q Consensus 283 ~W~~e~giDGfR~D~~~~l~~~~~~~~~~~~~~l~~i~~ 321 (631)
.|++.||=|=--|-.-..+ ..++|+++.+
T Consensus 193 ~~i~kYGkdtaff~TN~a~----------~epllk~~~~ 221 (275)
T PF12683_consen 193 KWIKKYGKDTAFFCTNDAM----------TEPLLKQALE 221 (275)
T ss_dssp HHHHHH-S--EEEESSHHH----------HHHHHHHHHH
T ss_pred HHHHHhCCceeEEecCccc----------cHHHHHHHHH
Confidence 9999999875444321111 2357888766
No 257
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=23.76 E-value=2.8e+02 Score=27.83 Aligned_cols=89 Identities=12% Similarity=0.180 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEeecccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHH
Q 006791 200 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 279 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~ 279 (631)
++|+|.+. +.|..+|.=+-+.-... -..|+........+.|--..+ .+|.|+ -.+.|..|+=++.+.+
T Consensus 63 ~eelr~~~----~gg~~pIAYlsIg~ae~---yR~Ywd~~w~~~~p~wLg~ed----P~W~Gn-y~VkYW~~eWkdii~~ 130 (300)
T COG2342 63 IEELRTKA----DGGVKPIAYLSIGEAES---YRFYWDKYWLTGRPDWLGEED----PEWPGN-YAVKYWEPEWKDIIRS 130 (300)
T ss_pred HHHHHHHh----cCCeeEEEEEechhhhh---hhhHhhhhhhcCCcccccCCC----CCCCCC-ceeeccCHHHHHHHHH
Confidence 37887664 56667776555544432 222221111111222222211 122322 2467888999999998
Q ss_pred HHHHHHHHcCccEEEEeccccc
Q 006791 280 SLRHWVVEYHVDGFRFDLASVL 301 (631)
Q Consensus 280 ~~~~W~~e~giDGfR~D~~~~l 301 (631)
.+...+ +.|+||.-+|.+...
T Consensus 131 ~l~rL~-d~GfdGvyLD~VD~y 151 (300)
T COG2342 131 YLDRLI-DQGFDGVYLDVVDAY 151 (300)
T ss_pred HHHHHH-HccCceEEEeeechH
Confidence 888888 899999999977654
No 258
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=23.69 E-value=53 Score=25.96 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=18.8
Q ss_pred hchHHHHcCCceEEECCCccc
Q 006791 136 KIPHLLELGINAVELLPVFEF 156 (631)
Q Consensus 136 ~LdyLk~LGvt~I~L~Pi~~~ 156 (631)
-++.+|++|+..|+-+|+...
T Consensus 29 ~~~~~~~~G~~~V~yLPLAa~ 49 (79)
T PF12996_consen 29 FVEEYRNLGAENVFYLPLAAN 49 (79)
T ss_pred HHHHHHHcCCCCEEEccccCC
Confidence 389999999999999998765
No 259
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=23.64 E-value=88 Score=31.22 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEeeccccc
Q 006791 200 SWEFKEMVKALHGAGIEVILDVVYNHTN 227 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilDvV~NH~~ 227 (631)
+.+|+++++.+|++|+.||+|+=+.-.+
T Consensus 72 i~~l~~~~~~~~~~g~~VilD~K~~DIp 99 (261)
T TIGR02127 72 FKALEEVIAHARSLGLPVLADVKRGDIG 99 (261)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeeccChH
Confidence 4789999999999999999999775543
No 260
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=23.55 E-value=87 Score=32.30 Aligned_cols=28 Identities=11% Similarity=0.130 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEeeccccc
Q 006791 200 SWEFKEMVKALHGAGIEVILDVVYNHTN 227 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilDvV~NH~~ 227 (631)
.++++++++.|+++|+-||+|-++-...
T Consensus 144 ~~~~~~l~~~a~~~~~~ii~De~y~~~~ 171 (330)
T TIGR01140 144 PETLLALAARLRARGGWLVVDEAFIDFT 171 (330)
T ss_pred HHHHHHHHHHhHhcCCEEEEECcccccC
Confidence 4899999999999999999999985443
No 261
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=23.53 E-value=1.2e+02 Score=32.03 Aligned_cols=68 Identities=16% Similarity=0.366 Sum_probs=45.3
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
+++.++...|..||.+||+.|.+ +|+=- -++ ..+|. .++| ...++|.
T Consensus 13 ~~~~~~~~~L~~LK~~GV~GVmv-dvWWG-iVE---~~~p~---~ydW-------------------------s~Y~~l~ 59 (402)
T PF01373_consen 13 NDWNALEAQLRALKSAGVDGVMV-DVWWG-IVE---GEGPQ---QYDW-------------------------SGYRELF 59 (402)
T ss_dssp SECHHHHHHHHHHHHTTEEEEEE-EEEHH-HHT---GSSTT---B----------------------------HHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCcEEEE-EeEee-eec---cCCCC---ccCc-------------------------HHHHHHH
Confidence 78889999999999999999976 33211 000 01111 1122 7789999
Q ss_pred HHHHHCCCEEEEEeecccccC
Q 006791 208 KALHGAGIEVILDVVYNHTNE 228 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~~~ 228 (631)
+.++++|++|..=+-+.-++.
T Consensus 60 ~~vr~~GLk~~~vmsfH~cGg 80 (402)
T PF01373_consen 60 EMVRDAGLKLQVVMSFHQCGG 80 (402)
T ss_dssp HHHHHTT-EEEEEEE-S-BSS
T ss_pred HHHHHcCCeEEEEEeeecCCC
Confidence 999999999998888877764
No 262
>PRK04302 triosephosphate isomerase; Provisional
Probab=23.49 E-value=1.5e+02 Score=28.66 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHCCCEEEEE
Q 006791 201 WEFKEMVKALHGAGIEVILD 220 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilD 220 (631)
+|..+++++|++.||.+|++
T Consensus 101 ~e~~~~v~~a~~~Gl~~I~~ 120 (223)
T PRK04302 101 ADIEAVVERAKKLGLESVVC 120 (223)
T ss_pred HHHHHHHHHHHHCCCeEEEE
Confidence 67999999999999999974
No 263
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=23.34 E-value=1.4e+02 Score=34.01 Aligned_cols=57 Identities=16% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 006791 131 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 210 (631)
Q Consensus 131 ~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~ 210 (631)
..+.+.|.-.|.+|+|+|.+..+.=+ ..+|.-|.---.- .|.. |++.|
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~---------------------------~~eP~eG~fdf~~----~D~~-~l~~a 77 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWN---------------------------LHEPEEGKFDFTW----LDEI-FLERA 77 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEee---------------------------ccCccccccCccc----chHH-HHHHH
Q ss_pred HHCCCEEEE
Q 006791 211 HGAGIEVIL 219 (631)
Q Consensus 211 H~~Gi~Vil 219 (631)
++.||.|||
T Consensus 78 ~~~Gl~vil 86 (673)
T COG1874 78 YKAGLYVIL 86 (673)
T ss_pred HhcCceEEE
No 264
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=23.26 E-value=4e+02 Score=26.47 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=48.1
Q ss_pred EEEEecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCC
Q 006791 106 IYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSP 185 (631)
Q Consensus 106 iYei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~ 185 (631)
|-.+-+++|+++-- .-+...+.++.....+-|.+.|-+...... | |..+.
T Consensus 5 ilN~tpdSF~dg~~-------~~~~~~~~~~a~~~~~~GA~iIDIG~~st~----------p--------~~~~i----- 54 (257)
T TIGR01496 5 IVNVTPDSFSDGGR-------FLSVDKAVAHAERMLEEGADIIDVGGESTR----------P--------GADRV----- 54 (257)
T ss_pred EEeCCCCCCCCCCC-------CCCHHHHHHHHHHHHHCCCCEEEECCCCCC----------C--------CCCCC-----
Confidence 44567899987510 024577888888888999999999542211 1 11111
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHC-CCEEEEEe
Q 006791 186 MSRYAAGGGGPLKASWEFKEMVKALHGA-GIEVILDV 221 (631)
Q Consensus 186 d~~yGt~~~~~~~~~~e~k~lV~~~H~~-Gi~VilDv 221 (631)
... .-++.++.+|+++++. ++.|.+|-
T Consensus 55 ----~~~-----~E~~rl~~~v~~~~~~~~~plsiDT 82 (257)
T TIGR01496 55 ----SPE-----EELNRVVPVIKALRDQPDVPISVDT 82 (257)
T ss_pred ----CHH-----HHHHHHHHHHHHHHhcCCCeEEEeC
Confidence 111 1112388888999988 98888883
No 265
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=23.19 E-value=82 Score=33.73 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEee
Q 006791 181 NFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVV 222 (631)
Q Consensus 181 d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~VilDvV 222 (631)
.+..+....|+. .+++++++.||++|.-|++|.+
T Consensus 167 ais~vSn~tG~~--------~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 167 ALSHVSNVTGTV--------NPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred EEECcccccccc--------chHHHHHHHHHHcCCEEEEECc
Confidence 344566677886 8999999999999999999987
No 266
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=23.06 E-value=7.5e+02 Score=29.01 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHC-CCEEEEEeecccccCC
Q 006791 198 KASWEFKEMVKALHGA-GIEVILDVVYNHTNEA 229 (631)
Q Consensus 198 ~~~~e~k~lV~~~H~~-Gi~VilDvV~NH~~~~ 229 (631)
..++.+|++++++|+. |-++++-+ +|.+..
T Consensus 472 ~~i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~ 502 (765)
T PRK08255 472 EQEAAWKRIVDFVHANSDAKIGIQL--GHSGRK 502 (765)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEc--cCCccc
Confidence 3578999999999999 68888876 888763
No 267
>PLN02801 beta-amylase
Probab=23.03 E-value=2.7e+02 Score=30.45 Aligned_cols=68 Identities=16% Similarity=0.380 Sum_probs=46.7
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcc-cchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFE-FDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEM 206 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~-~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~l 206 (631)
-+=++|...|..||.+||..|.+ +|+= ..+. .+|. .++| ...++|
T Consensus 34 ~~~~~l~~~L~~LK~~GVdGVmv-DVWWGiVE~-----~~P~---~YdW-------------------------sgY~~l 79 (517)
T PLN02801 34 EDEEGLEKQLKRLKEAGVDGVMV-DVWWGIVES-----KGPK---QYDW-------------------------SAYRSL 79 (517)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-eeeeeeecc-----CCCC---ccCc-------------------------HHHHHH
Confidence 34567888999999999999975 3321 1110 0110 1121 678899
Q ss_pred HHHHHHCCCEEEEEeecccccCC
Q 006791 207 VKALHGAGIEVILDVVYNHTNEA 229 (631)
Q Consensus 207 V~~~H~~Gi~VilDvV~NH~~~~ 229 (631)
++.++++|++|..=+-|.-++.+
T Consensus 80 ~~mvr~~GLKlq~vmSFHqCGGN 102 (517)
T PLN02801 80 FELVQSFGLKIQAIMSFHQCGGN 102 (517)
T ss_pred HHHHHHcCCeEEEEEEecccCCC
Confidence 99999999999988888777653
No 268
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=22.83 E-value=1e+02 Score=31.47 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEee
Q 006791 201 WEFKEMVKALHGAGIEVILDVV 222 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV 222 (631)
+.+.+|++.|+++|.+|++|.-
T Consensus 146 d~y~~li~~~~~~g~~vilD~S 167 (310)
T COG1105 146 DAYAELIRILRQQGAKVILDTS 167 (310)
T ss_pred HHHHHHHHHHHhcCCeEEEECC
Confidence 8899999999999999999965
No 269
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=22.83 E-value=68 Score=33.80 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEeec
Q 006791 201 WEFKEMVKALHGAGIEVILDVVY 223 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~ 223 (631)
.+++++++.||++|+.||+|-.+
T Consensus 153 ~di~~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 153 FDIEKVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred eCHHHHHHHHHHcCCEEEEECCC
Confidence 78999999999999999999985
No 270
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=22.79 E-value=2.8e+02 Score=28.29 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEeecccc
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNHT 226 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH~ 226 (631)
+++.+.++.++++||.|..|+.++--
T Consensus 163 ~~~~~ai~~l~~~gi~v~~~lI~GlP 188 (302)
T TIGR01212 163 ACYVDAVKRARKRGIKVCSHVILGLP 188 (302)
T ss_pred HHHHHHHHHHHHcCCEEEEeEEECCC
Confidence 88999999999999999999988653
No 271
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=22.57 E-value=65 Score=26.37 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=25.1
Q ss_pred CCcEEEEEEecCCCCeEEEEEeCCC---CcEEEEcCC-C-CCCCCeEEEEeC
Q 006791 552 DSKFLAFTLHDNNGADIYLAFNAHD---FFVKVSLPP-P-PPKRQWFRVVDT 598 (631)
Q Consensus 552 ~~~vla~~r~~~~~~~~lvv~N~~~---~~~~~~lp~-~-~~~~~~~~~~~~ 598 (631)
+++.+||+|..++.+.+.|+-|.+. ...++.++. . ..+..+.+|+..
T Consensus 5 d~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc 56 (91)
T PF09260_consen 5 DDSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSC 56 (91)
T ss_dssp ETTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTT
T ss_pred CCcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecC
Confidence 4689999997663345555556654 356777772 1 234456666544
No 272
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=22.51 E-value=5.4e+02 Score=28.15 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=45.5
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
.-|.-..|-+.-+|+||+++--+.=-+.- --|. |... + -...++=.++||
T Consensus 51 d~Y~ry~eDi~L~~~lG~~~yRfSIsWsR--------I~P~-------G~g~-----v----------N~~gl~~Y~~li 100 (469)
T PRK13511 51 DFYHRYPEDLKLAEEFGVNGIRISIAWSR--------IFPD-------GYGE-----V----------NPKGVEYYHRLF 100 (469)
T ss_pred chhhhhHHHHHHHHHhCCCEEEeeccHhh--------cCcC-------CCCC-----c----------CHHHHHHHHHHH
Confidence 46777888899999999999876543322 0010 1100 1 113457799999
Q ss_pred HHHHHCCCEEEEEeecccc
Q 006791 208 KALHGAGIEVILDVVYNHT 226 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~ 226 (631)
++|.++||+-|+-+. |.
T Consensus 101 d~l~~~GI~P~VTL~--H~ 117 (469)
T PRK13511 101 AECHKRHVEPFVTLH--HF 117 (469)
T ss_pred HHHHHcCCEEEEEec--CC
Confidence 999999999998764 64
No 273
>PRK06256 biotin synthase; Validated
Probab=22.28 E-value=88 Score=32.45 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEeeccc
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNH 225 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH 225 (631)
++..+.++.||+.||+|...+++.+
T Consensus 187 ~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 187 EDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHHHHcCCeeccCeEEeC
Confidence 8888999999999999999988876
No 274
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=22.22 E-value=94 Score=32.43 Aligned_cols=29 Identities=24% Similarity=0.559 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCccEEEEecc
Q 006791 270 HPVVMELILDSLRHWVVEYHVDGFRFDLA 298 (631)
Q Consensus 270 ~~~v~~~i~~~~~~W~~e~giDGfR~D~~ 298 (631)
+++.|+.+++++.-+++.+++||+-||--
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDwE 116 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDWE 116 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeeccc
Confidence 58889999999999999999999999954
No 275
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.02 E-value=3.7e+02 Score=28.39 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=42.9
Q ss_pred eEEE-EecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCC
Q 006791 105 VIYE-MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFF 183 (631)
Q Consensus 105 iiYe-i~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~ 183 (631)
|+.+ +.+.++.++. .+...+ .++++.+++ .|.|+|.++. + ..+| -
T Consensus 263 I~irypLIpGvNDs~---------e~a~~L---a~ll~~l~~-~VnLIPYN~~----------~------~~~~-----~ 308 (372)
T PRK11194 263 VTVEYVMLDHVNDGT---------EHAHQL---AELLKDTPC-KINLIPWNPF----------P------GAPY-----G 308 (372)
T ss_pred EEEEEEeECCCCCCH---------HHHHHH---HHHHhcCCc-eEEEecCCCC----------C------CCCC-----C
Confidence 4444 4677776643 233333 456777775 9999998765 1 1122 1
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEE
Q 006791 184 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVIL 219 (631)
Q Consensus 184 ~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~Vil 219 (631)
.+ +. +++++|.+.+.++||.|.+
T Consensus 309 ~p-----s~--------e~v~~f~~~L~~~Gi~vti 331 (372)
T PRK11194 309 RS-----SN--------SRIDRFSKVLMEYGFTVIV 331 (372)
T ss_pred CC-----CH--------HHHHHHHHHHHHCCCeEEE
Confidence 11 12 7888999999999999964
No 276
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=21.94 E-value=92 Score=31.84 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEeeccccc
Q 006791 200 SWEFKEMVKALHGAGIEVILDVVYNHTN 227 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilDvV~NH~~ 227 (631)
+++++++++.||+.|+.||+|-++....
T Consensus 151 ~~~l~~l~~~~~~~~~~~ivD~a~~~~~ 178 (350)
T cd00609 151 EEELEELAELAKKHGILIISDEAYAELV 178 (350)
T ss_pred HHHHHHHHHHHHhCCeEEEEecchhhce
Confidence 4899999999999999999999976543
No 277
>PLN02509 cystathionine beta-lyase
Probab=21.68 E-value=1e+02 Score=33.59 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=25.1
Q ss_pred CCCCchHHHHHHHHHHHHHCCCEEEEEeec
Q 006791 194 GGPLKASWEFKEMVKALHGAGIEVILDVVY 223 (631)
Q Consensus 194 ~~~~~~~~e~k~lV~~~H~~Gi~VilDvV~ 223 (631)
.+|.-.+.+++++++.||++|+-||+|-.+
T Consensus 227 sNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~ 256 (464)
T PLN02509 227 TNPRQQISDIRKIAEMAHAQGALVLVDNSI 256 (464)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 344445699999999999999999999884
No 278
>PRK05968 hypothetical protein; Provisional
Probab=21.63 E-value=1.1e+02 Score=32.61 Aligned_cols=25 Identities=8% Similarity=0.205 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEeec
Q 006791 199 ASWEFKEMVKALHGAGIEVILDVVY 223 (631)
Q Consensus 199 ~~~e~k~lV~~~H~~Gi~VilDvV~ 223 (631)
.+.+++++.+.||++|+.||+|-.+
T Consensus 162 ~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 162 ELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred cHHHHHHHHHHHHHcCCEEEEECCC
Confidence 3499999999999999999999864
No 279
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=21.53 E-value=43 Score=31.49 Aligned_cols=45 Identities=20% Similarity=0.085 Sum_probs=33.8
Q ss_pred chHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCE
Q 006791 137 IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIE 216 (631)
Q Consensus 137 LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV~~~H~~Gi~ 216 (631)
|..++++|++.|+|.+...... ... . .+++++.+.+.+.||.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~---------------------~~~---------~--------~~~~~~~~~~~~~gl~ 42 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPW---------------------DEK---------D--------DEAEELRRLLEDYGLK 42 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHH---------------------THH---------H--------HHHHHHHHHHHHTTCE
T ss_pred ChHHHHcCCCEEEEecCCCccc---------------------ccc---------h--------HHHHHHHHHHHHcCCe
Confidence 4678999999999988655410 000 2 7899999999999999
Q ss_pred EEE
Q 006791 217 VIL 219 (631)
Q Consensus 217 Vil 219 (631)
|+.
T Consensus 43 i~~ 45 (213)
T PF01261_consen 43 IAS 45 (213)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 280
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=21.46 E-value=1e+02 Score=26.64 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.8
Q ss_pred HHHHHHHHHHCCCEEEEEeeccccc
Q 006791 203 FKEMVKALHGAGIEVILDVVYNHTN 227 (631)
Q Consensus 203 ~k~lV~~~H~~Gi~VilDvV~NH~~ 227 (631)
+++|++.+.+.||+|++||=.+-.+
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S 26 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRS 26 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCC
Confidence 5778889999999999998766544
No 281
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=21.34 E-value=1.9e+02 Score=26.62 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 006791 201 WEFKEMVKALHGAGIEVIL 219 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~Vil 219 (631)
.++.++++.||++|++||+
T Consensus 86 ~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 86 ESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHHHHHHHHHCCCeEEE
Confidence 8999999999999999975
No 282
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=21.21 E-value=1e+02 Score=27.86 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEee
Q 006791 201 WEFKEMVKALHGAGIEVILDVV 222 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV 222 (631)
+.+.+++++++++|++||+=..
T Consensus 44 e~m~~ya~~a~~~g~~viIAgA 65 (162)
T COG0041 44 EKMFEYAEEAEERGVKVIIAGA 65 (162)
T ss_pred HHHHHHHHHHHHCCCeEEEecC
Confidence 8999999999999999998543
No 283
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=21.13 E-value=75 Score=33.43 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEeec
Q 006791 201 WEFKEMVKALHGAGIEVILDVVY 223 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~ 223 (631)
.+++++++.||++|+.||+|-.+
T Consensus 142 ~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 142 VDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred cCHHHHHHHHHHcCCEEEEECCC
Confidence 77999999999999999999875
No 284
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=20.89 E-value=1.1e+02 Score=30.64 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEee
Q 006791 201 WEFKEMVKALHGAGIEVILDVV 222 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV 222 (631)
+++++|++.||+.|+.+|+|+-
T Consensus 147 ~~l~~li~~a~~lGl~~lvevh 168 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEVH 168 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEeC
Confidence 7999999999999999999973
No 285
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=20.74 E-value=1.1e+02 Score=32.94 Aligned_cols=28 Identities=14% Similarity=0.289 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCccEEEEe
Q 006791 269 NHPVVMELILDSLRHWVVEYHVDGFRFD 296 (631)
Q Consensus 269 ~~~~v~~~i~~~~~~W~~e~giDGfR~D 296 (631)
.+++.|+.+++++.-+++++++||+-||
T Consensus 101 ~~~~~R~~Fi~siv~~l~~~~fDGidiD 128 (413)
T cd02873 101 ESSESRNAFINSAHSLLKTYGFDGLDLA 128 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEee
Confidence 4688899999999999999999999999
No 286
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=20.70 E-value=1.8e+02 Score=29.88 Aligned_cols=39 Identities=8% Similarity=0.152 Sum_probs=21.8
Q ss_pred EEEEecCcccCCCCCCCCCCCCcCHHHHHhhchHHHHcCCc
Q 006791 106 IYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGIN 146 (631)
Q Consensus 106 iYei~v~~F~~~~~~~~~~~~~G~~~gl~~~LdyLk~LGvt 146 (631)
...|++++... ..+.. ....|+|..+.+.|..+++.|+.
T Consensus 126 ~i~VSLDG~~e-~hd~~-~~~~g~f~~~l~~I~~l~~~G~~ 164 (318)
T TIGR03470 126 TFSVHLDGLRE-HHDAS-VCREGVFDRAVEAIREAKARGFR 164 (318)
T ss_pred EEEEEEecCch-hhchh-hcCCCcHHHHHHHHHHHHHCCCc
Confidence 34677776421 11111 11247788777777777777764
No 287
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=20.54 E-value=1.4e+02 Score=31.93 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCccEEEEecccccc
Q 006791 269 NHPVVMELILDSLRHWVVEYHVDGFRFDLASVLC 302 (631)
Q Consensus 269 ~~~~v~~~i~~~~~~W~~e~giDGfR~D~~~~l~ 302 (631)
.+|.++++|.+..+.-.+ -.+|||+|-.+.-+
T Consensus 374 DsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHSTP 405 (423)
T PF14701_consen 374 DSPFLWKHMKEYTELMAK--IFHGFRIDNCHSTP 405 (423)
T ss_pred CCHHHHHHHHHHHHHHHH--hcCeeeeecCCCCc
Confidence 469999999999988886 67999999776543
No 288
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=20.48 E-value=1.5e+02 Score=32.73 Aligned_cols=51 Identities=16% Similarity=0.024 Sum_probs=38.9
Q ss_pred cCHHHHHhh-chHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006791 128 GSYLGLIQK-IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAA 191 (631)
Q Consensus 128 G~~~gl~~~-LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt 191 (631)
|||..+... ++.+++-|....+|+|++... + ..+-.|.+.+=++.+|-|=+
T Consensus 32 GDfg~la~~~~d~~~~~g~~~wqllpl~p~~---------~----~~ssPYs~~S~~a~NplyI~ 83 (513)
T TIGR00217 32 GDLGDGAYKFIDFLKAGSQSVWQIHALYPAD---------F----TRSPPYSISSARALNVYYID 83 (513)
T ss_pred cChHHHHHHHHHHHHHcCCcEEEeCCCCCCC---------C----CCCCCcCchhcccccHHhcC
Confidence 999999855 699999999999999998762 1 12224888888887766654
No 289
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=20.47 E-value=1.1e+02 Score=32.29 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEeeccc
Q 006791 200 SWEFKEMVKALHGAGIEVILDVVYNH 225 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilDvV~NH 225 (631)
+.+++++++.||++|+.||.|-++-.
T Consensus 151 ~~dl~~I~~la~~~g~~livD~t~a~ 176 (377)
T TIGR01324 151 IQDIPAIAKAARNPGIVIMIDNTWAA 176 (377)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 38999999999999999999988754
No 290
>PRK10060 RNase II stability modulator; Provisional
Probab=20.44 E-value=84 Score=36.14 Aligned_cols=85 Identities=11% Similarity=0.022 Sum_probs=51.4
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
.+...+.+.+..|+++||...- =+++... ....+-.--+.|+-.+|.+|-..-........-++.+|
T Consensus 538 ~~~~~~~~~l~~L~~~G~~ial----DdfGtg~---------ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii 604 (663)
T PRK10060 538 ENEELALSVIQQFSQLGAQVHL----DDFGTGY---------SSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIV 604 (663)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE----ECCCCch---------hhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHH
Confidence 4566677778888999885432 1221000 00001112267888888777543111112235689999
Q ss_pred HHHHHCCCEEEEEeeccc
Q 006791 208 KALHGAGIEVILDVVYNH 225 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH 225 (631)
..||..||+||.+.|=+.
T Consensus 605 ~~a~~lg~~viAeGVEt~ 622 (663)
T PRK10060 605 AVAQALNLQVIAEGVETA 622 (663)
T ss_pred HHHHHCCCcEEEecCCCH
Confidence 999999999999988655
No 291
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=20.31 E-value=1.2e+02 Score=32.02 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEeec
Q 006791 200 SWEFKEMVKALHGAGIEVILDVVY 223 (631)
Q Consensus 200 ~~e~k~lV~~~H~~Gi~VilDvV~ 223 (631)
+.+++++++.||++|+-||.|-++
T Consensus 152 ~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 152 ETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCC
Confidence 389999999999999999999887
No 292
>PRK12928 lipoyl synthase; Provisional
Probab=20.31 E-value=2.6e+02 Score=28.35 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=39.0
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
-|...+.+.|..|+++|++.|.+.+... |+ ..++.+ .+|=++ ++|+++-
T Consensus 216 ET~ed~~etl~~Lrel~~d~v~i~~Yl~-----------p~-----------~~~~~v-~~~~~~--------~~f~~~~ 264 (290)
T PRK12928 216 ETEDEVIETLRDLRAVGCDRLTIGQYLR-----------PS-----------LAHLPV-QRYWTP--------EEFEALG 264 (290)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEcCCC-----------CC-----------ccCCce-eeccCH--------HHHHHHH
Confidence 3666677777888888887776655432 11 111222 355565 9999999
Q ss_pred HHHHHCCCEEE
Q 006791 208 KALHGAGIEVI 218 (631)
Q Consensus 208 ~~~H~~Gi~Vi 218 (631)
+.+.+.|++-|
T Consensus 265 ~~~~~~g~~~~ 275 (290)
T PRK12928 265 QIARELGFSHV 275 (290)
T ss_pred HHHHHcCCcee
Confidence 99999995433
No 293
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=20.24 E-value=1.9e+02 Score=31.46 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=58.7
Q ss_pred cCHHHHHhhchHHHHcCCceEEECCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 006791 128 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 207 (631)
Q Consensus 128 G~~~gl~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~~d~~yGt~~~~~~~~~~e~k~lV 207 (631)
--|.-..+-|+-+|+||+|+.-+.--+.-- .|++.-|.. -...++=.++||
T Consensus 55 d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri--------------------------~P~g~~g~~---n~~~~~~Y~~~i 105 (455)
T PF00232_consen 55 DHYHRYKEDIALMKELGVNAYRFSISWSRI--------------------------FPDGFEGKV---NEEGLDFYRDLI 105 (455)
T ss_dssp GHHHHHHHHHHHHHHHT-SEEEEE--HHHH--------------------------STTSSSSSS----HHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHhhccceeeeecchhhe--------------------------eeccccccc---CHhHhhhhHHHH
Confidence 346677788999999999998876533320 011101111 012346689999
Q ss_pred HHHHHCCCEEEEEeecccccCCCCCCC-cccccCCCCCCcCeeeCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 006791 208 KALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVV 286 (631)
Q Consensus 208 ~~~H~~Gi~VilDvV~NH~~~~~~~~~-~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~ln~~~~~v~~~i~~~~~~W~~ 286 (631)
++|.++||+.|+-+ .|.. .| |+... .| +.++++.+.+.+-+++-++
T Consensus 106 ~~l~~~gi~P~vtL--~H~~-----~P~~l~~~--------------------gg------w~~~~~~~~F~~Ya~~~~~ 152 (455)
T PF00232_consen 106 DELLENGIEPIVTL--YHFD-----LPLWLEDY--------------------GG------WLNRETVDWFARYAEFVFE 152 (455)
T ss_dssp HHHHHTT-EEEEEE--ESS-------BHHHHHH--------------------TG------GGSTHHHHHHHHHHHHHHH
T ss_pred HHHHhhccceeeee--eecc-----cccceeec--------------------cc------ccCHHHHHHHHHHHHHHHH
Confidence 99999999999876 4643 22 22111 11 2446677777777777777
Q ss_pred HcC
Q 006791 287 EYH 289 (631)
Q Consensus 287 e~g 289 (631)
+||
T Consensus 153 ~~g 155 (455)
T PF00232_consen 153 RFG 155 (455)
T ss_dssp HHT
T ss_pred HhC
Confidence 766
No 294
>PLN02389 biotin synthase
Probab=20.23 E-value=2e+02 Score=30.43 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEeeccc
Q 006791 201 WEFKEMVKALHGAGIEVILDVVYNH 225 (631)
Q Consensus 201 ~e~k~lV~~~H~~Gi~VilDvV~NH 225 (631)
++-.+.++.||+.||+|..=+++.|
T Consensus 213 e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 213 DDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred HHHHHHHHHHHHcCCeEeEEEEECC
Confidence 7888999999999999999999988
Done!