Query 006793
Match_columns 631
No_of_seqs 442 out of 3747
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 14:34:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 5.4E-91 1.2E-95 785.9 52.3 533 24-571 18-561 (623)
2 PF12819 Malectin_like: Carboh 100.0 7.2E-59 1.6E-63 488.5 30.0 319 34-367 1-347 (347)
3 PLN03150 hypothetical protein; 99.9 5.1E-22 1.1E-26 225.1 20.7 319 31-512 193-532 (623)
4 PF11721 Malectin: Di-glucose 99.6 2.5E-16 5.3E-21 149.7 8.0 141 31-177 2-174 (174)
5 PF11721 Malectin: Di-glucose 99.6 4E-16 8.8E-21 148.2 4.8 143 201-351 2-151 (174)
6 PLN00113 leucine-rich repeat r 99.6 9.9E-15 2.2E-19 175.7 12.3 148 375-535 27-179 (968)
7 PLN00113 leucine-rich repeat r 99.6 9.7E-15 2.1E-19 175.8 12.1 110 425-535 476-586 (968)
8 KOG0444 Cytoskeletal regulator 99.4 4.6E-14 1E-18 149.9 -0.5 172 338-533 11-186 (1255)
9 KOG0617 Ras suppressor protein 99.3 4E-14 8.6E-19 128.6 -3.3 174 336-533 35-212 (264)
10 KOG0617 Ras suppressor protein 99.2 7.3E-13 1.6E-17 120.5 -3.3 108 423-534 32-141 (264)
11 KOG0472 Leucine-rich repeat pr 99.2 8.9E-13 1.9E-17 134.2 -4.8 169 336-531 70-239 (565)
12 KOG4194 Membrane glycoprotein 99.1 2.4E-11 5.3E-16 128.9 4.2 106 425-532 174-281 (873)
13 KOG0444 Cytoskeletal regulator 99.1 2.4E-11 5.2E-16 129.6 3.2 107 424-533 126-258 (1255)
14 KOG0472 Leucine-rich repeat pr 99.0 1.5E-10 3.3E-15 118.2 1.7 152 360-533 388-541 (565)
15 PF12819 Malectin_like: Carboh 98.9 4.9E-09 1.1E-13 110.9 11.5 151 31-182 180-347 (347)
16 KOG4194 Membrane glycoprotein 98.9 1.9E-10 4E-15 122.4 0.1 185 335-532 174-377 (873)
17 KOG0618 Serine/threonine phosp 98.8 1.2E-09 2.5E-14 122.2 2.9 174 333-533 309-489 (1081)
18 KOG0532 Leucine-rich repeat (L 98.8 4.1E-10 8.9E-15 119.7 -3.0 193 310-534 55-248 (722)
19 PRK15387 E3 ubiquitin-protein 98.6 7E-08 1.5E-12 110.6 7.5 93 425-533 303-395 (788)
20 KOG4237 Extracellular matrix p 98.6 1.9E-09 4.1E-14 110.2 -4.6 105 425-531 68-175 (498)
21 KOG0618 Serine/threonine phosp 98.6 1.8E-08 3.8E-13 113.0 2.5 177 332-532 239-419 (1081)
22 PRK15370 E3 ubiquitin-protein 98.6 5E-08 1.1E-12 112.3 5.8 159 335-532 221-379 (754)
23 KOG0532 Leucine-rich repeat (L 98.6 2.2E-08 4.8E-13 106.8 2.7 152 341-518 105-256 (722)
24 PRK15387 E3 ubiquitin-protein 98.5 1.4E-07 3.1E-12 108.2 5.7 77 449-534 383-459 (788)
25 PF14580 LRR_9: Leucine-rich r 98.5 6.6E-08 1.4E-12 91.5 2.3 103 424-532 19-125 (175)
26 PRK15370 E3 ubiquitin-protein 98.4 2.8E-07 6.1E-12 106.2 6.9 97 425-533 200-296 (754)
27 PF13855 LRR_8: Leucine rich r 98.3 1.8E-07 3.8E-12 72.7 1.6 58 449-507 2-61 (61)
28 KOG4237 Extracellular matrix p 98.1 4E-07 8.7E-12 93.5 -0.2 97 438-535 263-361 (498)
29 PF13855 LRR_8: Leucine rich r 98.1 6.4E-07 1.4E-11 69.5 0.6 59 425-483 2-61 (61)
30 KOG1859 Leucine-rich repeat pr 98.1 7.8E-08 1.7E-12 105.1 -6.6 106 424-534 187-293 (1096)
31 COG4886 Leucine-rich repeat (L 98.1 1.2E-06 2.6E-11 94.8 2.2 103 424-531 116-220 (394)
32 KOG1259 Nischarin, modulator o 98.0 1.2E-06 2.5E-11 87.0 -0.8 114 412-531 295-410 (490)
33 PF14580 LRR_9: Leucine-rich r 97.9 9.9E-06 2.1E-10 76.7 3.8 85 444-533 15-101 (175)
34 cd00116 LRR_RI Leucine-rich re 97.8 4.1E-06 8.8E-11 87.5 0.4 107 425-531 138-261 (319)
35 KOG1259 Nischarin, modulator o 97.8 1.8E-06 4E-11 85.7 -2.2 101 425-532 285-386 (490)
36 COG4886 Leucine-rich repeat (L 97.8 1.3E-05 2.9E-10 86.6 4.0 171 336-533 118-290 (394)
37 KOG4579 Leucine-rich repeat (L 97.8 1.6E-06 3.4E-11 76.9 -2.7 88 425-516 54-143 (177)
38 KOG4579 Leucine-rich repeat (L 97.8 3E-06 6.6E-11 75.1 -1.0 101 426-531 29-134 (177)
39 PLN03210 Resistant to P. syrin 97.8 3.5E-05 7.7E-10 94.4 7.7 107 424-535 778-884 (1153)
40 PLN03210 Resistant to P. syrin 97.8 3E-05 6.5E-10 95.0 6.9 107 424-534 611-718 (1153)
41 cd00116 LRR_RI Leucine-rich re 97.8 5.7E-06 1.2E-10 86.4 -0.1 23 601-623 271-293 (319)
42 PF12799 LRR_4: Leucine Rich r 97.7 2.1E-05 4.5E-10 56.5 2.1 37 471-508 1-37 (44)
43 PF12799 LRR_4: Leucine Rich r 97.2 0.0001 2.2E-09 52.9 0.3 35 426-461 3-37 (44)
44 KOG4658 Apoptotic ATPase [Sign 97.1 0.00028 6E-09 83.1 2.5 103 425-529 546-651 (889)
45 KOG1859 Leucine-rich repeat pr 96.9 9.2E-05 2E-09 81.8 -2.8 101 426-533 166-267 (1096)
46 KOG3207 Beta-tubulin folding c 96.7 0.00022 4.8E-09 74.7 -2.1 84 422-505 144-232 (505)
47 KOG4658 Apoptotic ATPase [Sign 96.6 0.0011 2.3E-08 78.3 2.9 84 422-506 569-653 (889)
48 KOG0531 Protein phosphatase 1, 96.4 0.0014 3E-08 71.4 1.9 105 423-534 94-200 (414)
49 KOG3207 Beta-tubulin folding c 96.1 0.0027 5.8E-08 66.8 1.7 82 424-508 197-284 (505)
50 KOG0531 Protein phosphatase 1, 95.7 0.0022 4.7E-08 69.9 -0.8 101 425-532 73-174 (414)
51 PF08263 LRRNT_2: Leucine rich 95.4 0.022 4.8E-07 40.5 3.8 35 376-416 2-43 (43)
52 KOG1644 U2-associated snRNP A' 94.9 0.016 3.5E-07 55.3 2.4 79 426-508 44-126 (233)
53 PF00560 LRR_1: Leucine Rich R 94.7 0.0085 1.8E-07 36.0 -0.1 18 473-491 2-19 (22)
54 PRK15386 type III secretion pr 94.7 0.068 1.5E-06 57.2 6.6 93 425-530 73-187 (426)
55 KOG0473 Leucine-rich repeat pr 94.6 0.0043 9.3E-08 60.2 -2.4 83 424-509 42-125 (326)
56 KOG2982 Uncharacterized conser 94.5 0.0081 1.8E-07 60.4 -0.8 71 409-482 85-157 (418)
57 KOG2739 Leucine-rich acidic nu 94.1 0.039 8.5E-07 54.7 3.0 98 425-526 44-149 (260)
58 KOG2739 Leucine-rich acidic nu 93.7 0.033 7.2E-07 55.2 1.7 59 424-484 65-129 (260)
59 COG5238 RNA1 Ran GTPase-activa 93.6 0.057 1.2E-06 53.8 3.2 82 426-508 32-133 (388)
60 KOG1644 U2-associated snRNP A' 93.6 0.078 1.7E-06 50.7 3.9 79 448-531 42-124 (233)
61 KOG3593 Predicted receptor-lik 93.5 0.07 1.5E-06 53.1 3.5 66 261-328 107-174 (355)
62 PF00560 LRR_1: Leucine Rich R 93.1 0.035 7.5E-07 33.3 0.5 20 496-516 1-20 (22)
63 PRK15386 type III secretion pr 93.1 0.11 2.3E-06 55.7 4.6 73 424-506 94-188 (426)
64 KOG1909 Ran GTPase-activating 92.6 0.064 1.4E-06 55.3 2.0 107 425-533 93-226 (382)
65 KOG1909 Ran GTPase-activating 92.5 0.098 2.1E-06 54.0 3.1 107 425-532 186-310 (382)
66 KOG0473 Leucine-rich repeat pr 92.4 0.0053 1.2E-07 59.6 -5.7 88 442-533 36-124 (326)
67 KOG3593 Predicted receptor-lik 92.1 0.12 2.7E-06 51.4 3.2 140 17-165 47-197 (355)
68 KOG3665 ZYG-1-like serine/thre 92.1 0.1 2.3E-06 60.2 3.0 107 423-531 147-261 (699)
69 KOG2123 Uncharacterized conser 90.9 0.027 5.8E-07 56.3 -2.9 65 423-490 40-107 (388)
70 KOG3665 ZYG-1-like serine/thre 89.7 0.078 1.7E-06 61.2 -0.8 106 425-533 123-233 (699)
71 PF13504 LRR_7: Leucine rich r 88.6 0.28 6.1E-06 27.3 1.3 13 496-508 2-14 (17)
72 PF13504 LRR_7: Leucine rich r 88.5 0.16 3.5E-06 28.4 0.3 11 473-483 3-13 (17)
73 smart00370 LRR Leucine-rich re 88.4 0.4 8.6E-06 29.8 2.1 22 494-516 1-22 (26)
74 smart00369 LRR_TYP Leucine-ric 88.4 0.4 8.6E-06 29.8 2.1 22 494-516 1-22 (26)
75 smart00369 LRR_TYP Leucine-ric 84.6 0.47 1E-05 29.5 0.9 18 448-466 2-19 (26)
76 smart00370 LRR Leucine-rich re 84.6 0.47 1E-05 29.5 0.9 18 448-466 2-19 (26)
77 KOG2982 Uncharacterized conser 84.6 0.25 5.5E-06 50.0 -0.5 83 425-507 72-158 (418)
78 COG5238 RNA1 Ran GTPase-activa 83.9 0.93 2E-05 45.5 3.1 106 425-533 93-227 (388)
79 KOG2120 SCF ubiquitin ligase, 82.7 0.051 1.1E-06 54.8 -6.2 84 425-508 186-273 (419)
80 KOG2123 Uncharacterized conser 81.1 0.27 5.8E-06 49.4 -1.8 96 426-526 21-123 (388)
81 PF13306 LRR_5: Leucine rich r 79.7 2.4 5.2E-05 37.3 4.1 97 426-529 14-112 (129)
82 PF13516 LRR_6: Leucine Rich r 77.0 1.1 2.5E-05 27.1 0.8 21 494-514 1-21 (24)
83 PF04478 Mid2: Mid2 like cell 73.8 2 4.2E-05 39.2 1.7 22 554-575 49-70 (154)
84 smart00364 LRR_BAC Leucine-ric 70.0 2.4 5.1E-05 26.6 0.9 17 472-489 3-19 (26)
85 PF01102 Glycophorin_A: Glycop 67.5 4 8.6E-05 36.1 2.2 27 558-584 68-94 (122)
86 TIGR00864 PCC polycystin catio 66.9 3.6 7.9E-05 53.6 2.5 31 477-508 1-32 (2740)
87 PF08693 SKG6: Transmembrane a 65.1 5 0.00011 27.9 1.8 20 553-572 9-28 (40)
88 PF13306 LRR_5: Leucine rich r 62.4 8.4 0.00018 33.7 3.5 82 443-530 7-91 (129)
89 PF02439 Adeno_E3_CR2: Adenovi 57.9 9.6 0.00021 26.1 2.2 9 575-583 26-34 (38)
90 TIGR01478 STEVOR variant surfa 56.0 8.6 0.00019 38.8 2.5 26 562-587 266-291 (295)
91 KOG2120 SCF ubiquitin ligase, 52.7 1.2 2.6E-05 45.3 -4.0 60 471-531 185-245 (419)
92 PTZ00370 STEVOR; Provisional 52.7 9.9 0.00021 38.5 2.3 26 562-587 262-287 (296)
93 smart00365 LRR_SD22 Leucine-ri 50.8 12 0.00026 23.4 1.7 15 494-508 1-15 (26)
94 PTZ00382 Variant-specific surf 47.8 15 0.00031 31.2 2.3 20 552-571 64-83 (96)
95 smart00368 LRR_RI Leucine rich 47.4 14 0.00029 23.4 1.6 14 495-508 2-15 (28)
96 PF01299 Lamp: Lysosome-associ 44.6 15 0.00032 38.3 2.2 50 522-581 248-298 (306)
97 PF15102 TMEM154: TMEM154 prot 43.8 19 0.00042 32.7 2.6 7 578-584 81-87 (146)
98 KOG2230 Predicted beta-mannosi 43.8 4.4E+02 0.0095 29.7 13.0 155 245-414 33-205 (867)
99 KOG3864 Uncharacterized conser 39.3 3.6 7.8E-05 39.7 -2.9 79 425-503 102-184 (221)
100 KOG3763 mRNA export factor TAP 37.7 14 0.00031 40.9 0.9 14 424-437 218-231 (585)
101 KOG4308 LRR-containing protein 36.1 3.3 7.2E-05 45.9 -4.3 83 426-508 89-185 (478)
102 KOG3763 mRNA export factor TAP 34.3 19 0.00042 39.9 1.2 62 446-510 216-285 (585)
103 PF05454 DAG1: Dystroglycan (D 33.3 14 0.00031 37.9 0.0 12 574-585 166-177 (290)
104 PF14575 EphA2_TM: Ephrin type 33.1 18 0.00039 29.1 0.6 9 575-583 20-28 (75)
105 PF02009 Rifin_STEVOR: Rifin/s 32.1 22 0.00048 36.7 1.2 13 567-579 268-280 (299)
106 PF12191 stn_TNFRSF12A: Tumour 30.8 30 0.00065 30.5 1.6 7 537-543 59-65 (129)
107 PF10731 Anophelin: Thrombin i 29.0 63 0.0014 24.5 2.8 28 1-29 1-28 (65)
108 KOG1947 Leucine rich repeat pr 28.5 18 0.00039 39.5 -0.2 84 424-507 214-307 (482)
109 PF05393 Hum_adeno_E3A: Human 27.2 63 0.0014 26.6 2.7 7 577-583 54-60 (94)
110 PTZ00046 rifin; Provisional 26.0 41 0.00088 35.5 1.9 25 559-583 319-343 (358)
111 TIGR01477 RIFIN variant surfac 24.2 46 0.00099 35.0 1.8 23 560-582 315-337 (353)
112 PF06667 PspB: Phage shock pro 23.8 1.1E+02 0.0023 24.7 3.5 21 581-601 28-48 (75)
113 PRK06764 hypothetical protein; 22.6 76 0.0017 25.8 2.4 19 89-107 73-91 (105)
114 PF08374 Protocadherin: Protoc 21.7 87 0.0019 30.5 3.0 8 586-593 80-87 (221)
115 PHA03265 envelope glycoprotein 21.4 50 0.0011 34.4 1.5 10 33-42 24-33 (402)
116 PF01034 Syndecan: Syndecan do 20.8 35 0.00075 26.4 0.1 6 578-583 34-39 (64)
117 PF15050 SCIMP: SCIMP protein 20.2 1E+02 0.0023 26.9 2.9 10 581-590 36-45 (133)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=5.4e-91 Score=785.93 Aligned_cols=533 Identities=38% Similarity=0.653 Sum_probs=436.9
Q ss_pred ccCCCCccEEEccCCCCCc-cCCCCceEeeCCCCeecCCcccccCCCCCCCCCCceeeecCCCCCCCceEEeecCCCcce
Q 006793 24 SSYPYKASYRIDCGSATST-TDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRY 102 (631)
Q Consensus 24 ~~~~~~~~~~IdCG~~~~~-~d~~~~~w~~Dd~~~~~g~~~~~~~~~~~~~~~~~t~R~F~~~~g~~~cY~~pv~~~g~y 102 (631)
++.|.+++|+||||+++++ +|.+||+|++|. .+++|.......+ ....++|+|+|+||.++|++|||+||+.++|+|
T Consensus 18 ~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~-~~~~~~~~~~~~~-~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~g~y 95 (623)
T PLN03150 18 LASPEPFTMRISCGARVNVRTAPTNTLWYKDF-AYTGGIPANATRP-SFIAPPLKTLRYFPLSDGPENCYNINRVPKGHY 95 (623)
T ss_pred cccCCCccEEEeCCCCCCcccCCCCCEEcCCc-ccccCccccccCc-ccccchhhccccCCcccccccceEeeecCCCcE
Confidence 3444578899999999877 778999999964 3444443333333 344578999999998779999999999899999
Q ss_pred EEEEEeecCCCCCCCCCCceEEEECCEEEeecCCCCccccCCCceEEEEEEEeeCCeeeEEEeecCCCCceeeeEEEEEc
Q 006793 103 YIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQI 182 (631)
Q Consensus 103 lvRl~F~y~nyd~~~~~~~Fdv~i~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~~~~~~~pfIn~iEl~~l 182 (631)
+||+||+|||||+.++.|.|||++|++.|.+....+.. ....++||+++++.++.++|||++++.++||||+||||+|
T Consensus 96 lVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~--~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFIs~iEv~~l 173 (623)
T PLN03150 96 SVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSS--HDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEILQV 173 (623)
T ss_pred EEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCccc--CCCcEEEEEEEEecCCcEEEEEecCCCCCCceeEEEEEEc
Confidence 99999999999998888999999999765543322221 2456899999999999999999999899999999999999
Q ss_pred CCCCCCccC-cCccceEEEeeeeccCCCCCCCCCcCCCCCC--CCCcCCCCCCCCCCCCCCceeeeccceeeCCCCCCCC
Q 006793 183 DPLSYDAAT-IGNNHILVNYGRLTSGSNQWGPGFSNDADDF--GRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNY 259 (631)
Q Consensus 183 ~~~~y~~~~-~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~--dR~W~~d~~~~~~~~~~~~~~~~t~~~i~~~~~~~~~ 259 (631)
|+.+|.... .+++.+|++++|+||||....+.++|++|++ ||+|.+|++|..+ .+..+++...|++++.+|+.
T Consensus 174 ~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~----~~~~~st~~~I~~~~~~~~~ 249 (623)
T PLN03150 174 DDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSG----SDQAISTENVIKKASNAPNF 249 (623)
T ss_pred CcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCC----cccccccccccccccCCCcc
Confidence 999996432 2446679999999999876555678999999 9999999887732 24456777778776666788
Q ss_pred ChHHHHHHHhcCC---CceEEEEecCCCCceEEEEEeeccccccccCCceEEEEEECCe-eccccceeccCCC-ccceee
Q 006793 260 YPMKLYQTAIVSS---GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGS-FAAYSW 334 (631)
Q Consensus 260 ~P~~Vy~TA~~~~---~~lt~~~~v~~~~~y~v~LhFaEi~~~~~~~~~R~F~V~in~~-~l~~~di~~~~g~-~~~~~~ 334 (631)
+|+.||||||++. .+++|.|++++++.|+|||||||++......++|+|+|++||+ .+..+|+....|+ ..+.++
T Consensus 250 ~P~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~ 329 (623)
T PLN03150 250 YPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVL 329 (623)
T ss_pred ChHHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEE
Confidence 9999999999984 4799999999999999999999998655556899999999998 5677888766655 456666
Q ss_pred eeeEeecCCceEEEEEcccchh-hhhhccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 006793 335 HYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (631)
Q Consensus 335 ~~~~l~ls~n~L~~~l~~~~~~-~~Ln~lEi~~l~~~~~~~~p~~~~~l~~l~~~~~~~~~~~w~gdpc~~~~~~~w~gv 413 (631)
++.+.. .++.+++++.|..++ |+|||+|||++.+.+..+.+.|+.+|.++|..+..+...+|+||||.|.. +.|.|+
T Consensus 330 ~~~v~~-~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~-~~w~Gv 407 (623)
T PLN03150 330 NKTVAV-SGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQ-HPWSGA 407 (623)
T ss_pred EeEEee-cCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcc-cccccc
Confidence 555433 457899999998876 89999999999998888999999999999998876544589999998765 689999
Q ss_pred eecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCC
Q 006793 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (631)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~ 492 (631)
.|..........++.|+|++|.++|.+|..++.|++|+.|+|++|.|+|.+|+.++. ++|+.|+|++|+|+|.+|+.++
T Consensus 408 ~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 408 DCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred eeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 996433222346899999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred CCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCCCCCCCCCCCCcccCCCCcCCceEEehhhHHHHHHHHH
Q 006793 493 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLFWENGGLSKGGKIAIVILSLVLFSGVL 571 (631)
Q Consensus 493 ~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~p~~~~c~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ 571 (631)
+|++|+.|+|++|+|+|.+|..+.....++..+++.+|+.+|+.|....|.. .......+++++++++++++++
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~~-----~~~~~~~i~~~~~~~~~~l~~~ 561 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP-----HLSVGAKIGIAFGVSVAFLFLV 561 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCcc-----cCCCceEEEEEhHHHHHHHHHH
Confidence 9999999999999999999999887655677899999999999887788863 2223334444544444333333
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=7.2e-59 Score=488.51 Aligned_cols=319 Identities=27% Similarity=0.473 Sum_probs=243.8
Q ss_pred EccCCCCCc---cC-CCCceEeeCCCCeecCCcccccCC----CCCCCCCCceeeecCCCCCCCceEEeecC--CCcceE
Q 006793 34 IDCGSATST---TD-PFNTTWQADDRYYTSGATSIVSEP----LHFRFPHEKTLRYFPPSSGKKNCYIIPNL--PPGRYY 103 (631)
Q Consensus 34 IdCG~~~~~---~d-~~~~~w~~Dd~~~~~g~~~~~~~~----~~~~~~~~~t~R~F~~~~g~~~cY~~pv~--~~g~yl 103 (631)
||||++.+. +| .+||+|++|++++.+|.+..++.. .....++|+|+|+|| +|.|+||+||+. ++++||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~--~g~r~cY~l~~~~~~~~~yl 78 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFP--EGSRNCYTLPVTPPGGGKYL 78 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcC--CCCccEEEeeccCCCCceEE
Confidence 799998764 44 579999999988888887666321 123468999999999 477899999997 345999
Q ss_pred EEEEeecCCCCCCC-----CCCceEEEECCEEEeecCCCCccccCCCceEEEEEEEee-CCeeeEEEeecCCCC-ceeee
Q 006793 104 IRTFTVYDNYDGKS-----HSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVK-DGELDLCFYSFATDP-PVIAS 176 (631)
Q Consensus 104 vRl~F~y~nyd~~~-----~~~~Fdv~i~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~-~~~l~v~~~~~~~~~-pfIn~ 176 (631)
|||||+|||||+++ +++.|||++|++.+..... ......++++|+++.+. ++.|.|||+|++.|. |||||
T Consensus 79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~---~~~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsa 155 (347)
T PF12819_consen 79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNL---SNSPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISA 155 (347)
T ss_pred EEEEeccccccccccccccCCcceEEEECCceeEEEEe---cCCCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeE
Confidence 99999999999863 2577999999997433111 11112468999888887 799999999999786 99999
Q ss_pred EEEEEcCCCCCCccCcCccceEEEeeeeccCCCCCCCCCcCCCCCCCCCcCCCCCCCCCCCCCCceeeeccceee-CCCC
Q 006793 177 LEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERIT-NTNQ 255 (631)
Q Consensus 177 iEl~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~dR~W~~d~~~~~~~~~~~~~~~~t~~~i~-~~~~ 255 (631)
|||||||+++|+.....++.+|++++|+|||+... .+||++|.+||+|.++.. ...|..++++.+++ ....
T Consensus 156 iEl~~lp~~ly~~~~~~~s~~L~~~~R~n~G~~~~--~iryp~D~~dR~W~~~~~------~~~~~~ist~~~i~~~~~~ 227 (347)
T PF12819_consen 156 IELRPLPDSLYPDTDANSSQALETVYRLNVGGSSS--FIRYPDDTYDRIWQPYSS------SPGWSNISTTSNININSSN 227 (347)
T ss_pred EEEEECCccceeccccCCCceeEEEEeecCCCccc--ccCCCCCcceeecccccc------CccccccccceeeecccCC
Confidence 99999999999643335578899999999997631 278999999999996521 12466777766676 3345
Q ss_pred CCCCChHHHHHHHhcCC-----CceEEEEecCCCCceEEEEEeeccccccccCCceEEEEEECCeeccccceec-cCCC-
Q 006793 256 PPNYYPMKLYQTAIVSS-----GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFN-SVGS- 328 (631)
Q Consensus 256 ~~~~~P~~Vy~TA~~~~-----~~lt~~~~v~~~~~y~v~LhFaEi~~~~~~~~~R~F~V~in~~~l~~~di~~-~~g~- 328 (631)
+++.||.+|||||+++. -+++|.+ ++++..|+||||||||+......++|+|+|++||+.... ++.. ..+.
T Consensus 228 ~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~-~~~~~~~~~~ 305 (347)
T PF12819_consen 228 NPYDAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYS-DVSPPYLGAD 305 (347)
T ss_pred ccCcChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccC-ccCcccccCc
Confidence 56779999999999992 2577777 888999999999999998654556899999999996543 4433 2222
Q ss_pred ccceeeeeeEeecCCceEEEEEcccchh---hhhhccccccc
Q 006793 329 FAAYSWHYVAKNLSSTELTVKLVPVVGA---ALISGLENYAL 367 (631)
Q Consensus 329 ~~~~~~~~~~l~ls~n~L~~~l~~~~~~---~~Ln~lEi~~l 367 (631)
..+.+.++.+....+..+.++|.+..++ |+|||+|||++
T Consensus 306 ~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 306 TVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred ceEeecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 3344445544444455788999998775 89999999975
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.89 E-value=5.1e-22 Score=225.06 Aligned_cols=319 Identities=18% Similarity=0.261 Sum_probs=199.4
Q ss_pred cEEEccCCCCCc--cCC------CCceEeeCCCCeecCC-----ccccc----CCCCCCCCCCceeeecCCCCCCCceEE
Q 006793 31 SYRIDCGSATST--TDP------FNTTWQADDRYYTSGA-----TSIVS----EPLHFRFPHEKTLRYFPPSSGKKNCYI 93 (631)
Q Consensus 31 ~~~IdCG~~~~~--~d~------~~~~w~~Dd~~~~~g~-----~~~~~----~~~~~~~~~~~t~R~F~~~~g~~~cY~ 93 (631)
-+|||||+.+.. .|. -.|.|.+|+.|..... ...+. .+...|..+|+|+|.+... ....+|+
T Consensus 193 ~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~-~~~lty~ 271 (623)
T PLN03150 193 AKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDT-QPDLSYT 271 (623)
T ss_pred EEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhhhhccccCC-CCceEEE
Confidence 369999986432 222 2699999766543210 11111 1223456689999998752 2356999
Q ss_pred eecCCCcceEEEEEeecCCC-CCCCCCCceEEEECCEEEeecCCCCcccc-CCCceEEEEEEEeeCCeeeEEEeecCCCC
Q 006793 94 IPNLPPGRYYIRTFTVYDNY-DGKSHSPSFDVSVEGTLVFSWRSPWPEGL-ARDGAYSDLFAFVKDGELDLCFYSFATDP 171 (631)
Q Consensus 94 ~pv~~~g~ylvRl~F~y~ny-d~~~~~~~Fdv~i~~~~~l~~~~~~~~~~-~~~~~~~e~i~~~~~~~l~v~~~~~~~~~ 171 (631)
|++.+++.|+||+||..-.. ......+.|||+++|..+++.+|+....+ ...++++++.+.+.++.+.|+|+|.....
T Consensus 272 ~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~~g~l~isl~p~~~s~ 351 (623)
T PLN03150 272 MDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGTH 351 (623)
T ss_pred eecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeecCCeEEEEEeeCCCCc
Confidence 99988899999999964322 11224688999999999999998744322 23578889988777788999999987667
Q ss_pred ceeeeEEEEEcCCCCCCccCcCccceEEEeeeeccCCCCCCCCCcCCCCCCCCCcCCCCCCCCCCCCCCceeeeccceee
Q 006793 172 PVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERIT 251 (631)
Q Consensus 172 pfIn~iEl~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~dR~W~~d~~~~~~~~~~~~~~~~t~~~i~ 251 (631)
|+||||||+.+-..-..+. .....+|..+.. ..+ +...--|..|.
T Consensus 352 pilNaiEI~~~~~~~~~t~-~~~~~aL~~~k~-~~~------------~~~~~~W~g~~--------------------- 396 (623)
T PLN03150 352 AIINAIEVFEIITAESKTL-LEEVSALQTLKS-SLG------------LPLRFGWNGDP--------------------- 396 (623)
T ss_pred ceeeeeeeeeccccccccC-chHHHHHHHHHH-hcC------------CcccCCCCCCC---------------------
Confidence 9999999998764211100 000111111100 000 00000132110
Q ss_pred CCCCCCCCChHHHHHHHhcCCCceEEEEecCCCCceEEEEEeeccccccccCCceEEEEEECCeeccccceeccCCCccc
Q 006793 252 NTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAA 331 (631)
Q Consensus 252 ~~~~~~~~~P~~Vy~TA~~~~~~lt~~~~v~~~~~y~v~LhFaEi~~~~~~~~~R~F~V~in~~~l~~~di~~~~g~~~~ 331 (631)
..| .. ..| . + + -|.... . .+
T Consensus 397 ---C~p----~~-----------~~w--~---G----v---~C~~~~----~----------------------~~---- 416 (623)
T PLN03150 397 ---CVP----QQ-----------HPW--S---G----A---DCQFDS----T----------------------KG---- 416 (623)
T ss_pred ---CCC----cc-----------ccc--c---c----c---eeeccC----C----------------------CC----
Confidence 000 00 000 0 0 0 010000 0 00
Q ss_pred eeeeeeEeecCCceEEEEEcccchhhhhhccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 006793 332 YSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (631)
Q Consensus 332 ~~~~~~~l~ls~n~L~~~l~~~~~~~~Ln~lEi~~l~~~~~~~~p~~~~~l~~l~~~~~~~~~~~w~gdpc~~~~~~~w~ 411 (631)
...+..++++++.+. +.+|.++.
T Consensus 417 -~~~v~~L~L~~n~L~-------------------------g~ip~~i~------------------------------- 439 (623)
T PLN03150 417 -KWFIDGLGLDNQGLR-------------------------GFIPNDIS------------------------------- 439 (623)
T ss_pred -ceEEEEEECCCCCcc-------------------------ccCCHHHh-------------------------------
Confidence 001112233333322 22232211
Q ss_pred ceeecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCcc
Q 006793 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS 490 (631)
Q Consensus 412 gv~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~ 490 (631)
.+.+|+.|+|++|.|.|.+|+.++.|++|+.|+|++|+|+|.+|+.++. ++|+.|+|++|+|+|.+|..
T Consensus 440 ----------~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 440 ----------KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred ----------CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 1234788999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCC-CCCCEEEcccCcCccccc
Q 006793 491 LTSS-SKLQLVLLNNNLLEGRVP 512 (631)
Q Consensus 491 l~~l-~~L~~L~ls~N~l~g~iP 512 (631)
++.+ .++..+++.+|...+..|
T Consensus 510 l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 510 LGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred HhhccccCceEEecCCccccCCC
Confidence 8764 577899999997654444
No 4
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.65 E-value=2.5e-16 Score=149.68 Aligned_cols=141 Identities=28% Similarity=0.401 Sum_probs=90.3
Q ss_pred cEEEccCCCCCccCCCCceEeeCCCCeecCCcc------------cccC--CCCCCCCCCceeeecCCCCCCCceEEeec
Q 006793 31 SYRIDCGSATSTTDPFNTTWQADDRYYTSGATS------------IVSE--PLHFRFPHEKTLRYFPPSSGKKNCYIIPN 96 (631)
Q Consensus 31 ~~~IdCG~~~~~~d~~~~~w~~Dd~~~~~g~~~------------~~~~--~~~~~~~~~~t~R~F~~~~g~~~cY~~pv 96 (631)
.++||||++.. +|..|..|.+ |.++.+|... .... .....+++|+|.|+-+. .+.|.||+
T Consensus 2 ~~~IN~Gg~~~-~~~~g~~w~~-D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~ 75 (174)
T PF11721_consen 2 VLRINAGGPAY-TDSSGIVWEA-DQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPV 75 (174)
T ss_dssp EEEEEETSSSE-EETTTEEE-S-SSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE-
T ss_pred EEEEECCCCcc-cCCCCCEEcC-CCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEec
Confidence 37999999755 7789999999 5555444330 0001 11223579999999764 38999997
Q ss_pred CCCcceEEEEEeecCCCCC-----CCCCCceEEEECCEEEeecCCCCccccCCC-ceEEEE-EEEeeCCeeeEEEee---
Q 006793 97 LPPGRYYIRTFTVYDNYDG-----KSHSPSFDVSVEGTLVFSWRSPWPEGLARD-GAYSDL-FAFVKDGELDLCFYS--- 166 (631)
Q Consensus 97 ~~~g~ylvRl~F~y~nyd~-----~~~~~~Fdv~i~~~~~l~~~~~~~~~~~~~-~~~~e~-i~~~~~~~l~v~~~~--- 166 (631)
.+.|.|.|||||....+.. ....+.|||+++|..+++++|++.+++... ++++++ -+.+.++.|.|+|..
T Consensus 76 ~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~~~ 155 (174)
T PF11721_consen 76 VPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWAGK 155 (174)
T ss_dssp -S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE--
T ss_pred CCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEecCC
Confidence 6999999999994332222 123789999999999999999988775544 677777 456789999999985
Q ss_pred --------cCCCCceeeeE
Q 006793 167 --------FATDPPVIASL 177 (631)
Q Consensus 167 --------~~~~~pfIn~i 177 (631)
...+.|.||||
T Consensus 156 ~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 156 GTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp SEEEEEEESSSSSSSEEEE
T ss_pred CcEEeeccccCCCcEEeeC
Confidence 44667888887
No 5
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.61 E-value=4e-16 Score=148.21 Aligned_cols=143 Identities=24% Similarity=0.384 Sum_probs=85.5
Q ss_pred eeeeccCCCCCCCCCcCCCCCCCCCcCCCCCCCCCCCCCCceeee-ccceeeCCCCCCCCChHHHHHHHhcCCCceEEEE
Q 006793 201 YGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVT-TRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNL 279 (631)
Q Consensus 201 ~~R~n~G~~~~~~~~~~~~D~~dR~W~~d~~~~~~~~~~~~~~~~-t~~~i~~~~~~~~~~P~~Vy~TA~~~~~~lt~~~ 279 (631)
++||||||.. + +|..++.|.+|+.|..+.+.- ..... ...........+...+..+|||+|.....++|.+
T Consensus 2 ~~~IN~Gg~~------~-~~~~g~~w~~D~~~~~g~~~y-~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~~f~Y~i 73 (174)
T PF11721_consen 2 VLRINAGGPA------Y-TDSSGIVWEADQYYTGGSWGY-YVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPSSFSYDI 73 (174)
T ss_dssp EEEEEETSSS------E-EETTTEEE-SSSSSTTSS------------SSTTS--TTS-HHHHHTTT-----SSSEEEEE
T ss_pred EEEEECCCCc------c-cCCCCCEEcCCCCCCCCCccc-ccccccccccccccccccCCCchhhhHhhcCCCCceEEEE
Confidence 5899999764 3 677899999999887555410 00000 0000111112223357799999998645899999
Q ss_pred ecCCCCceEEEEEeecccccc----ccCCceEEEEEECCe-eccccceeccCCCcc-ceeeeeeEeecCCceEEEEEc
Q 006793 280 AVDAKLDYLIWFHFAEIDSSV----TKAGQRVFDILVNDK-NVTRVDIFNSVGSFA-AYSWHYVAKNLSSTELTVKLV 351 (631)
Q Consensus 280 ~v~~~~~y~v~LhFaEi~~~~----~~~~~R~F~V~in~~-~l~~~di~~~~g~~~-~~~~~~~~l~ls~n~L~~~l~ 351 (631)
|+.+++.|.|+|||||+.... ...++|+|+|++||+ .+.++||+..+|+.. +....+......++.|.+.|.
T Consensus 74 p~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~ 151 (174)
T PF11721_consen 74 PVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFV 151 (174)
T ss_dssp E--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEE
T ss_pred ecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEE
Confidence 966778899999999988643 237899999999998 789999999888754 555555333456778888777
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.56 E-value=9.9e-15 Score=175.66 Aligned_cols=148 Identities=34% Similarity=0.543 Sum_probs=121.1
Q ss_pred chhHHHHHHHHHHhcCCCC--CCCCCC-CCCCCCCCCCCcceeecCCCCCceeEEEEEEecCCCCcccCchhhccccccc
Q 006793 375 VPEQVIAMRALKESLRVPD--RMGWNG-DPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLV 451 (631)
Q Consensus 375 ~p~~~~~l~~l~~~~~~~~--~~~w~g-dpc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~ 451 (631)
.|.|..+|.++|..+..+. ..+|+. +.| |.|.|+.|... .+++.|+|++|.++|.++..+..+++|+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~-----c~w~gv~c~~~-----~~v~~L~L~~~~i~~~~~~~~~~l~~L~ 96 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADV-----CLWQGITCNNS-----SRVVSIDLSGKNISGKISSAIFRLPYIQ 96 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCC-----CcCcceecCCC-----CcEEEEEecCCCccccCChHHhCCCCCC
Confidence 5789999999999875443 347854 455 69999999742 3588999999999999999999999999
Q ss_pred ccccccccCCCCCCCccc-c-ccccccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecC
Q 006793 452 NLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSG 529 (631)
Q Consensus 452 ~L~Ls~N~l~g~iP~~~~-~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~ 529 (631)
.|+|++|+++|.+|..+. . ++|++|+|++|+++|.+|. +.+++|++|+|++|.+++.+|..+..+. +|+.|++++
T Consensus 97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~L~~ 173 (968)
T PLN00113 97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS-SLKVLDLGG 173 (968)
T ss_pred EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCC-CCCEEECcc
Confidence 999999999999998876 5 8899999999999888885 4578888888888888888888877765 788888888
Q ss_pred CCCCCC
Q 006793 530 NKGLCG 535 (631)
Q Consensus 530 N~~lc~ 535 (631)
|.+...
T Consensus 174 n~l~~~ 179 (968)
T PLN00113 174 NVLVGK 179 (968)
T ss_pred Cccccc
Confidence 875443
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.56 E-value=9.7e-15 Score=175.75 Aligned_cols=110 Identities=33% Similarity=0.504 Sum_probs=76.4
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
.|+.|+|++|.++|.+|..+.++++|+.|+|++|.+.|.+|..+.. ++|+.|+|++|.++|.+|..+.++++|+.|+|+
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 4666777777777777777777777777777777777777776666 677777777777777777777777777777777
Q ss_pred cCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
+|+++|.+|..+..+. .|+.+++++|++.+.
T Consensus 556 ~N~l~~~~p~~l~~l~-~L~~l~ls~N~l~~~ 586 (968)
T PLN00113 556 QNQLSGEIPKNLGNVE-SLVQVNISHNHLHGS 586 (968)
T ss_pred CCcccccCChhHhcCc-ccCEEeccCCcceee
Confidence 7777777776666554 566667666665543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.38 E-value=4.6e-14 Score=149.92 Aligned_cols=172 Identities=23% Similarity=0.296 Sum_probs=135.3
Q ss_pred EeecCCceEE-EEEcccchhhhhhccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceeec
Q 006793 338 AKNLSSTELT-VKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCH 416 (631)
Q Consensus 338 ~l~ls~n~L~-~~l~~~~~~~~Ln~lEi~~l~~~~~~~~p~~~~~l~~l~~~~~~~~~~~w~gdpc~~~~~~~w~gv~c~ 416 (631)
..++++|.+. ..||..... +..+..+++...++..+|+++++|++|..+-..-+..- +-.
T Consensus 11 GvDfsgNDFsg~~FP~~v~q--Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~------------~vh----- 71 (1255)
T KOG0444|consen 11 GVDFSGNDFSGDRFPHDVEQ--MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI------------SVH----- 71 (1255)
T ss_pred cccccCCcCCCCcCchhHHH--hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH------------hhh-----
Confidence 3456777776 355555543 77788888888889999999999999987422111100 000
Q ss_pred CCCCCceeEEEEEEecCCCCc-ccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccC-CC
Q 006793 417 PNKDETAVVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL-TS 493 (631)
Q Consensus 417 ~~~~~~~~~l~~L~Ls~n~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l-~~ 493 (631)
.....+++|+.+++..|+|. .-||+.|..|..|+.||||+|+|. ++|..+.. +++-.|+||+|++. +||..+ .+
T Consensus 72 -GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfin 148 (1255)
T KOG0444|consen 72 -GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFIN 148 (1255)
T ss_pred -hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHh
Confidence 11123456888899999986 458999999999999999999999 99999999 99999999999999 788764 68
Q ss_pred CCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 494 l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
|..|-.||||+|+|. .+|+.+.++. +|++|+|++||+.
T Consensus 149 LtDLLfLDLS~NrLe-~LPPQ~RRL~-~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLE-MLPPQIRRLS-MLQTLKLSNNPLN 186 (1255)
T ss_pred hHhHhhhccccchhh-hcCHHHHHHh-hhhhhhcCCChhh
Confidence 899999999999999 8999988886 8899999999954
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=4e-14 Score=128.63 Aligned_cols=174 Identities=21% Similarity=0.324 Sum_probs=139.0
Q ss_pred eeEeecCCceEEEEEcccchhhhhhccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceee
Q 006793 336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC 415 (631)
Q Consensus 336 ~~~l~ls~n~L~~~l~~~~~~~~Ln~lEi~~l~~~~~~~~p~~~~~l~~l~~~~~~~~~~~w~gdpc~~~~~~~w~gv~c 415 (631)
.+.+.++.|+++ .++|.+.. +..+|++.+.+|+...+|..+..|.+++..... .+.+.-
T Consensus 35 ITrLtLSHNKl~-~vppnia~--l~nlevln~~nnqie~lp~~issl~klr~lnvg------------------mnrl~~ 93 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAE--LKNLEVLNLSNNQIEELPTSISSLPKLRILNVG------------------MNRLNI 93 (264)
T ss_pred hhhhhcccCcee-ecCCcHHH--hhhhhhhhcccchhhhcChhhhhchhhhheecc------------------hhhhhc
Confidence 445668899998 66777765 788999999999999999999999999874211 112222
Q ss_pred cCCCCCceeEEEEEEecCCCCcc-cCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCC
Q 006793 416 HPNKDETAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (631)
Q Consensus 416 ~~~~~~~~~~l~~L~Ls~n~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~ 493 (631)
.+.+.|.++.|+.|||+.|++.. .+|..|..++.|+-|+|+.|.|. .+|+.+++ ++|+.|.+.+|.|- ++|.+++.
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~ 171 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD 171 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence 33445667789999999999974 68889999999999999999999 89999999 99999999999998 79999999
Q ss_pred CCCCCEEEcccCcCccccchhhhhccC--CCCeEeecCCCCC
Q 006793 494 SSKLQLVLLNNNLLEGRVPEELYSIGV--HGGAFDLSGNKGL 533 (631)
Q Consensus 494 l~~L~~L~ls~N~l~g~iP~~l~~~~~--~L~~l~l~~N~~l 533 (631)
++.|+.|.+++|+++ .+|++++.+.. +-..+.+..|||.
T Consensus 172 lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred HHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 999999999999999 89988876531 1123445566654
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=7.3e-13 Score=120.47 Aligned_cols=108 Identities=25% Similarity=0.345 Sum_probs=97.7
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+..++.|.||+|.++ .+|+.+..|.+|+.|++++|++. .+|..++. ++|+.|+++-|+|. .+|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 456889999999999 78999999999999999999999 99999999 99999999999999 8999999999999999
Q ss_pred cccCcCc-cccchhhhhccCCCCeEeecCCCCCC
Q 006793 502 LNNNLLE-GRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 502 ls~N~l~-g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
|+.|++. ..+|..++.+. .|+.|.+++|.|--
T Consensus 109 ltynnl~e~~lpgnff~m~-tlralyl~dndfe~ 141 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMT-TLRALYLGDNDFEI 141 (264)
T ss_pred ccccccccccCCcchhHHH-HHHHHHhcCCCccc
Confidence 9999995 57888888765 57788999998654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.17 E-value=8.9e-13 Score=134.22 Aligned_cols=169 Identities=21% Similarity=0.324 Sum_probs=98.4
Q ss_pred eeEeecCCceEEEEEcccchhhhhhccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceee
Q 006793 336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC 415 (631)
Q Consensus 336 ~~~l~ls~n~L~~~l~~~~~~~~Ln~lEi~~l~~~~~~~~p~~~~~l~~l~~~~~~~~~~~w~gdpc~~~~~~~w~gv~c 415 (631)
++++++.+|++. ++|+.++. +.++.-..++.+....+|.++..+..++... |......|
T Consensus 70 l~vl~~~~n~l~-~lp~aig~--l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~------------------~s~n~~~e 128 (565)
T KOG0472|consen 70 LTVLNVHDNKLS-QLPAAIGE--LEALKSLNVSHNKLSELPEQIGSLISLVKLD------------------CSSNELKE 128 (565)
T ss_pred eeEEEeccchhh-hCCHHHHH--HHHHHHhhcccchHhhccHHHhhhhhhhhhh------------------ccccceee
Confidence 556667777776 77777765 4444444455566677777777777776533 22223333
Q ss_pred cCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCC
Q 006793 416 HPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSS 494 (631)
Q Consensus 416 ~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l 494 (631)
.+..++.+..+..|+..+|+++ .+|+.+.++.+|..|++.+|++. .+|+..-. +.|++||..+|-+. .+|+.++.|
T Consensus 129 l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l 205 (565)
T KOG0472|consen 129 LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGL 205 (565)
T ss_pred cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcch
Confidence 3333333444556666666666 55666666666666666666666 55555444 66666666666665 566666666
Q ss_pred CCCCEEEcccCcCccccchhhhhccCCCCeEeecCCC
Q 006793 495 SKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 495 ~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
.+|..|+|.+|++. .+| +|..+. .|+.|.++.|.
T Consensus 206 ~~L~~LyL~~Nki~-~lP-ef~gcs-~L~Elh~g~N~ 239 (565)
T KOG0472|consen 206 ESLELLYLRRNKIR-FLP-EFPGCS-LLKELHVGENQ 239 (565)
T ss_pred hhhHHHHhhhcccc-cCC-CCCccH-HHHHHHhcccH
Confidence 66666666666665 455 333322 34445554444
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.14 E-value=2.4e-11 Score=128.94 Aligned_cols=106 Identities=22% Similarity=0.234 Sum_probs=87.0
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc--ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~--~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
+++.|+|++|.++..-...|..|.+|..|.|+.|+++ .+|....+ ++|+.|+|..|++.-.--..|.+|++|+.|.|
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 5889999999998666778999999999999999999 88877655 89999999999987322446788999999999
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
..|.++ .+-++.+....++++|+|+.|+.
T Consensus 253 qrN~I~-kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 253 QRNDIS-KLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred hhcCcc-cccCcceeeecccceeecccchh
Confidence 999998 56666555555788999998884
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.12 E-value=2.4e-11 Score=129.57 Aligned_cols=107 Identities=32% Similarity=0.382 Sum_probs=86.9
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCC-----------------
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG----------------- 485 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g----------------- 485 (631)
.++..|+||+|++....-+-+-+|+.|-.||||+|+|. .+|+.+.. ..|+.|+||+|.|.-
T Consensus 126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 34667888888888433345778888999999999998 88888888 888888888886521
Q ss_pred --------CCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 486 --------SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 486 --------~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
.+|.++..|.+|..+|+|.|+|. .+|..+..+. +|+.|+|++|...
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~-~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR-NLRRLNLSGNKIT 258 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh-hhheeccCcCcee
Confidence 47888888889999999999998 8899988886 7889999999854
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.97 E-value=1.5e-10 Score=118.19 Aligned_cols=152 Identities=24% Similarity=0.312 Sum_probs=123.3
Q ss_pred hccccccccCCCCCCchhHHHHHHHHHHhcCCCC-CCCCCCCCCCCCCCCCCcceeecCCCCCceeEEEEEEecCCCCcc
Q 006793 360 SGLENYALVPNDLSTVPEQVIAMRALKESLRVPD-RMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG 438 (631)
Q Consensus 360 n~lEi~~l~~~~~~~~p~~~~~l~~l~~~~~~~~-~~~w~gdpc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g 438 (631)
+.+....+..|+..++|.++..+..+...+...+ ..+|.+. ..| .+.+|+.|+|++|-+.
T Consensus 388 ~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~------------~l~------~l~kLt~L~L~NN~Ln- 448 (565)
T KOG0472|consen 388 EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPL------------ELS------QLQKLTFLDLSNNLLN- 448 (565)
T ss_pred cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchH------------HHH------hhhcceeeecccchhh-
Confidence 3444556667888999999888888877554332 2344321 112 3456889999999998
Q ss_pred cCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhh
Q 006793 439 YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYS 517 (631)
Q Consensus 439 ~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~ 517 (631)
.+|.+++.+..|+.||+|+|+|. .+|..+.. ..|+.+-.++|++...-|+.+.+|.+|..|||.+|.+. .||+.+++
T Consensus 449 ~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgn 526 (565)
T KOG0472|consen 449 DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGN 526 (565)
T ss_pred hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcc
Confidence 89999999999999999999999 99998888 88888888889998444444999999999999999999 99999998
Q ss_pred ccCCCCeEeecCCCCC
Q 006793 518 IGVHGGAFDLSGNKGL 533 (631)
Q Consensus 518 ~~~~L~~l~l~~N~~l 533 (631)
+. ++++|.+.||+|.
T Consensus 527 mt-nL~hLeL~gNpfr 541 (565)
T KOG0472|consen 527 MT-NLRHLELDGNPFR 541 (565)
T ss_pred cc-ceeEEEecCCccC
Confidence 87 8999999999976
No 15
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.94 E-value=4.9e-09 Score=110.88 Aligned_cols=151 Identities=24% Similarity=0.323 Sum_probs=96.0
Q ss_pred cEEEccCCCCC---c-cCCCCceEeeC---CCCeecCCcccc-----cCCCCCCCCCCceeeecCCCC-CCCceEEeecC
Q 006793 31 SYRIDCGSATS---T-TDPFNTTWQAD---DRYYTSGATSIV-----SEPLHFRFPHEKTLRYFPPSS-GKKNCYIIPNL 97 (631)
Q Consensus 31 ~~~IdCG~~~~---~-~d~~~~~w~~D---d~~~~~g~~~~~-----~~~~~~~~~~~~t~R~F~~~~-g~~~cY~~pv~ 97 (631)
-+|+|||++.. + .|.-+|.|.+. ..+-.-..+..+ ......|..+|+|||.....+ .-..+|.+ +.
T Consensus 180 ~~R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~ 258 (347)
T PF12819_consen 180 VYRLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQTARTPSNSSDPLNLTWSF-VD 258 (347)
T ss_pred EEeecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHHhhhcccccccceEEEecc-CC
Confidence 47899998752 2 45568999962 111110111111 113345678999999987532 12337777 66
Q ss_pred CCcceEEEEEeecCCCC-CCCCCCceEEEECCEEEeecCCCCccccCCCceEEEEEEEeeC-CeeeEEEeecCCC--Cce
Q 006793 98 PPGRYYIRTFTVYDNYD-GKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKD-GELDLCFYSFATD--PPV 173 (631)
Q Consensus 98 ~~g~ylvRl~F~y~nyd-~~~~~~~Fdv~i~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~-~~l~v~~~~~~~~--~pf 173 (631)
++..|+||+||-.=... .....+.|+|++||..+.+.++.........++++++++.+++ +.+.|+|.++..+ .|+
T Consensus 259 ~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppi 338 (347)
T PF12819_consen 259 PGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPI 338 (347)
T ss_pred CCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecceEEEecCCCEEEEEEEeCCCCCcCce
Confidence 67799999999532111 1122689999999998776444421121233457888877654 5799999998765 599
Q ss_pred eeeEEEEEc
Q 006793 174 IASLEVQQI 182 (631)
Q Consensus 174 In~iEl~~l 182 (631)
|||+||..|
T Consensus 339 LNalEIy~v 347 (347)
T PF12819_consen 339 LNALEIYKV 347 (347)
T ss_pred eEeeeeEeC
Confidence 999999864
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.92 E-value=1.9e-10 Score=122.39 Aligned_cols=185 Identities=21% Similarity=0.197 Sum_probs=112.4
Q ss_pred eeeEeecCCceEEEEEcccchhhhhhccccccccCCCCCCchhH-HHHHHHHHHhcCCCCCC---CCCCCCCCCCCCCCC
Q 006793 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRM---GWNGDPCAPTNWDAW 410 (631)
Q Consensus 335 ~~~~l~ls~n~L~~~l~~~~~~~~Ln~lEi~~l~~~~~~~~p~~-~~~l~~l~~~~~~~~~~---~w~gdpc~~~~~~~w 410 (631)
.+..+++++|.++ .+....= ..+|.+-.+++..|...++|.- +..|.+|+.+.-..+.. .| ..+
T Consensus 174 ni~~L~La~N~It-~l~~~~F-~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~----------ltF 241 (873)
T KOG4194|consen 174 NIKKLNLASNRIT-TLETGHF-DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG----------LTF 241 (873)
T ss_pred CceEEeecccccc-ccccccc-cccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh----------hhh
Confidence 4566777777765 2221110 2367777778888888888864 34476666532111110 12 112
Q ss_pred cceee------cCCCC-----C---ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccc
Q 006793 411 EGITC------HPNKD-----E---TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVR 475 (631)
Q Consensus 411 ~gv~c------~~~~~-----~---~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~ 475 (631)
.|+.. ..+++ | .+..++.|+|+.|+++..-...+-+|++|+.|+||+|.+.-.-++.+.. ++|++
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKE 321 (873)
T ss_pred cCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccccee
Confidence 22211 00000 0 1234677777777777665666777777777777777777555666766 77777
Q ss_pred cccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCC
Q 006793 476 LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 476 L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
|+||+|+++.--|..|..|..|+.|+|++|.++ .+-+..+....+|+.|||..|.+
T Consensus 322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred EeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeE
Confidence 777777777544556677777777777777777 55555555555777777777763
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.84 E-value=1.2e-09 Score=122.20 Aligned_cols=174 Identities=29% Similarity=0.337 Sum_probs=120.8
Q ss_pred eeeeeEeecCCceEEEEEcccchhhhhhc-cccccccCCCCCCchh----HHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 006793 333 SWHYVAKNLSSTELTVKLVPVVGAALISG-LENYALVPNDLSTVPE----QVIAMRALKESLRVPDRMGWNGDPCAPTNW 407 (631)
Q Consensus 333 ~~~~~~l~ls~n~L~~~l~~~~~~~~Ln~-lEi~~l~~~~~~~~p~----~~~~l~~l~~~~~~~~~~~w~gdpc~~~~~ 407 (631)
.+.+..+++..|.|. .+|+..- .+++. ++.+..+.+...++|. ...+|+.|.- .. +--+|.|.
T Consensus 309 ~~sL~tLdL~~N~L~-~lp~~~l-~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyl---an---N~Ltd~c~---- 376 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLP-SLPDNFL-AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYL---AN---NHLTDSCF---- 376 (1081)
T ss_pred cceeeeeeehhcccc-ccchHHH-hhhhHHHHHHhhhhccccccccccchhhHHHHHHHH---hc---Ccccccch----
Confidence 345667777777775 5665332 23333 4444444444444442 1233333322 11 11235553
Q ss_pred CCCcceeecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCC
Q 006793 408 DAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486 (631)
Q Consensus 408 ~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~ 486 (631)
.-+.| ...|+.|+|++|+|.......+.+|..|+.|+||+|+|+ .||..+.. ..|++|...+|++. .
T Consensus 377 ---p~l~~-------~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~ 444 (1081)
T KOG0618|consen 377 ---PVLVN-------FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-S 444 (1081)
T ss_pred ---hhhcc-------ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-e
Confidence 22333 246999999999998444457999999999999999999 99999999 99999999999999 7
Q ss_pred CCccCCCCCCCCEEEcccCcCc-cccchhhhhccCCCCeEeecCCCCC
Q 006793 487 IPDSLTSSSKLQLVLLNNNLLE-GRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 487 iP~~l~~l~~L~~L~ls~N~l~-g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
+| ++..+++|+.+||+.|+|+ +.+|...-. ++|+.||++||..+
T Consensus 445 fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~--p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 445 FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS--PNLKYLDLSGNTRL 489 (1081)
T ss_pred ch-hhhhcCcceEEecccchhhhhhhhhhCCC--cccceeeccCCccc
Confidence 99 8999999999999999997 344443321 58999999999843
No 18
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.78 E-value=4.1e-10 Score=119.69 Aligned_cols=193 Identities=22% Similarity=0.314 Sum_probs=138.2
Q ss_pred EEECCeeccccceeccCCCccceeeeeeEeecCCceEEEEEcccchhhhhhccccccccCCCCCCchhHHHHHHHHHHhc
Q 006793 310 ILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESL 389 (631)
Q Consensus 310 V~in~~~l~~~di~~~~g~~~~~~~~~~~l~ls~n~L~~~l~~~~~~~~Ln~lEi~~l~~~~~~~~p~~~~~l~~l~~~~ 389 (631)
+.++|..+..|+. |+......+-+..+++.|.+. .+|..... .-.+|..-+..|...++|..+..|..+....
T Consensus 55 l~Ls~rrlk~fpr----~a~~~~ltdt~~aDlsrNR~~-elp~~~~~--f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ 127 (722)
T KOG0532|consen 55 LLLSGRRLKEFPR----GAASYDLTDTVFADLSRNRFS-ELPEEACA--FVSLESLILYHNCIRTIPEAICNLEALTFLD 127 (722)
T ss_pred cccccchhhcCCC----ccccccccchhhhhccccccc-cCchHHHH--HHHHHHHHHHhccceecchhhhhhhHHHHhh
Confidence 4456665655543 222222334455667777765 44433332 3345555555677888888887777765433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcceeecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCccc
Q 006793 390 RVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG 469 (631)
Q Consensus 390 ~~~~~~~w~gdpc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~ 469 (631)
-..+..+ ...--.|.. -|+.|-+++|+++ .+|++++.+..|..||.+.|.+. .+|..++
T Consensus 128 ls~NqlS------------~lp~~lC~l-------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~ 186 (722)
T KOG0532|consen 128 LSSNQLS------------HLPDGLCDL-------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG 186 (722)
T ss_pred hccchhh------------cCChhhhcC-------cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh
Confidence 2222111 111122321 2788999999998 89999999999999999999999 9999999
Q ss_pred c-ccccccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 470 Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 470 ~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
. .+|+.|++..|++. .+|++++.| .|..||+|.|+++ .||-.+.++. +|+.|.|.+||+-.
T Consensus 187 ~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~-~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMR-HLQVLQLENNPLQS 248 (722)
T ss_pred hHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhh-hheeeeeccCCCCC
Confidence 9 99999999999999 799999854 6899999999999 9999998876 89999999999543
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.60 E-value=7e-08 Score=110.64 Aligned_cols=93 Identities=27% Similarity=0.292 Sum_probs=55.5
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCccccccccccccccccCCCCCCccCCCCCCCCEEEccc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~ 504 (631)
.|+.|+|++|.|++ +|... ..|+.|++++|+|+ .+|... .+|+.|+|++|+|+ .+|... .+|+.|++++
T Consensus 303 ~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~-~LP~lp--~~Lq~LdLS~N~Ls-~LP~lp---~~L~~L~Ls~ 371 (788)
T PRK15387 303 GLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT-SLPTLP--SGLQELSVSDNQLA-SLPTLP---SELYKLWAYN 371 (788)
T ss_pred ccceeECCCCcccc-CCCCc---ccccccccccCccc-cccccc--cccceEecCCCccC-CCCCCC---cccceehhhc
Confidence 47777888887774 34322 34566677777776 455311 46777777777777 456432 3566666777
Q ss_pred CcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 505 NLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 505 N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
|+|+ .+|... .+|+.|++++|++.
T Consensus 372 N~L~-~LP~l~----~~L~~LdLs~N~Lt 395 (788)
T PRK15387 372 NRLT-SLPALP----SGLKELIVSGNRLT 395 (788)
T ss_pred cccc-cCcccc----cccceEEecCCccc
Confidence 7666 355422 24566677666643
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.59 E-value=1.9e-09 Score=110.18 Aligned_cols=105 Identities=24% Similarity=0.287 Sum_probs=72.9
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccc-cccccccccCCCCCCc-cCCCCCCCCEEE
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL-VRLDLSDNQFTGSIPD-SLTSSSKLQLVL 501 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L-~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~ 501 (631)
..+.|+|..|.|+...|..|+.+++|+.||||+|.++-.-|+.+.. .+| +.+++++|+++ .+|. .|++|.+|+-|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 4678889999998666678889999999999999998555666766 554 44445558888 5665 477788888888
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
+.-|++.......+.++. ++..|.+.+|.
T Consensus 147 lNan~i~Cir~~al~dL~-~l~lLslyDn~ 175 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLP-SLSLLSLYDNK 175 (498)
T ss_pred cChhhhcchhHHHHHHhh-hcchhcccchh
Confidence 888887743333333332 55555555553
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.59 E-value=1.8e-08 Score=112.97 Aligned_cols=177 Identities=26% Similarity=0.295 Sum_probs=123.1
Q ss_pred eeeeeeEeecCCceEEEEEcccchhhhhhccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 006793 332 YSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (631)
Q Consensus 332 ~~~~~~~l~ls~n~L~~~l~~~~~~~~Ln~lEi~~l~~~~~~~~p~~~~~l~~l~~~~~~~~~~~w~gdpc~~~~~~~w~ 411 (631)
....+..++++.++++ .+|...+. +..+|...+..|.+..+|.++.++.+++.....-+.....
T Consensus 239 ~p~nl~~~dis~n~l~-~lp~wi~~--~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yi------------- 302 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLS-NLPEWIGA--CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYI------------- 302 (1081)
T ss_pred ccccceeeecchhhhh-cchHHHHh--cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhC-------------
Confidence 3445666677777766 44533333 4556777777777888999999888887643111100100
Q ss_pred ceeecCCCCCceeEEEEEEecCCCCcccCch-hhccccc-ccccccccccCCCCCCCcccc--ccccccccccccCCCCC
Q 006793 412 GITCHPNKDETAVVISQIDLGSQGLKGYISD-KISLLSN-LVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSI 487 (631)
Q Consensus 412 gv~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~-~~~~l~~-L~~L~Ls~N~l~g~iP~~~~~--~~L~~L~Ls~N~l~g~i 487 (631)
+...+.+..|+.|+|..|+|. .+|+ .+..+.. |..|+.+.|++. ..|..=.. ..|+.|.+.+|.|+...
T Consensus 303 -----p~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 303 -----PPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred -----CCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccc
Confidence 011112345899999999998 5555 4444444 788888889888 77744333 77999999999998776
Q ss_pred CccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCC
Q 006793 488 PDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 488 P~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
=+.+.++..|+.|+|++|+|. .+|+........|+.|+++||++
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred hhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchh
Confidence 667888899999999999998 88887766666888999999984
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.58 E-value=5e-08 Score=112.25 Aligned_cols=159 Identities=23% Similarity=0.336 Sum_probs=94.6
Q ss_pred eeeEeecCCceEEEEEcccchhhhhhccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 006793 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (631)
Q Consensus 335 ~~~~l~ls~n~L~~~l~~~~~~~~Ln~lEi~~l~~~~~~~~p~~~~~l~~l~~~~~~~~~~~w~gdpc~~~~~~~w~gv~ 414 (631)
.+..+.+++|.|+ .+|... ...++.+.+..|....+|..+. ..|+.. .. + | +....+
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l----~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L-~L----s-----~-----N~L~~L- 277 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATL----PDTIQEMELSINRITELPERLP--SALQSL-DL----F-----H-----NKISCL- 277 (754)
T ss_pred CCCEEECCCCccc-cCChhh----hccccEEECcCCccCcCChhHh--CCCCEE-EC----c-----C-----CccCcc-
Confidence 4666777888776 555432 2356777777777667776432 112111 00 0 0 000111
Q ss_pred ecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCccccccccccccccccCCCCCCccCCCC
Q 006793 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSS 494 (631)
Q Consensus 415 c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l 494 (631)
+... ...|+.|+|++|.|++ +|..+. ++|+.|+|++|+|+ .+|..+. ++|+.|++++|.|+ .+|..+.
T Consensus 278 --P~~l--~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~-~sL~~L~Ls~N~Lt-~LP~~l~-- 345 (754)
T PRK15370 278 --PENL--PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETLP-PGLKTLEAGENALT-SLPASLP-- 345 (754)
T ss_pred --cccc--CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcccc-ccceeccccCCccc-cCChhhc--
Confidence 1100 1247778888888773 554433 46777888888887 5665433 67788888888887 4776654
Q ss_pred CCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCC
Q 006793 495 SKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 495 ~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
++|+.|++++|+|+ .+|..+. ..|+.|++++|.+
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~L 379 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNAL 379 (754)
T ss_pred CcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcC
Confidence 57888888888887 5676542 3677888887764
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.58 E-value=2.2e-08 Score=106.75 Aligned_cols=152 Identities=23% Similarity=0.379 Sum_probs=117.1
Q ss_pred cCCceEEEEEcccchhhhhhccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceeecCCCC
Q 006793 341 LSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKD 420 (631)
Q Consensus 341 ls~n~L~~~l~~~~~~~~Ln~lEi~~l~~~~~~~~p~~~~~l~~l~~~~~~~~~~~w~gdpc~~~~~~~w~gv~c~~~~~ 420 (631)
+..|.+. .++..... |+++-...+..|++..+|..+=.| -||.+... -+.++|.+..+
T Consensus 105 Ly~n~~r-~ip~~i~~--L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~s------------------NNkl~~lp~~i 162 (722)
T KOG0532|consen 105 LYHNCIR-TIPEAICN--LEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVS------------------NNKLTSLPEEI 162 (722)
T ss_pred HHhccce-ecchhhhh--hhHHHHhhhccchhhcCChhhhcC-cceeEEEe------------------cCccccCCccc
Confidence 4455555 45555554 888888888888888888754332 13322211 12334555555
Q ss_pred CceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCccccccccccccccccCCCCCCccCCCCCCCCEE
Q 006793 421 ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 421 ~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (631)
+.+..|..||.+.|.+. .+|+.+++|.+|+.|.+..|++. .+|+++..-.|..||+|.|+++ .||.+|.+|..|++|
T Consensus 163 g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVL 239 (722)
T ss_pred ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCceeeeecccCcee-ecchhhhhhhhheee
Confidence 55667889999999998 88999999999999999999999 8999888877999999999999 899999999999999
Q ss_pred EcccCcCccccchhhhhc
Q 006793 501 LLNNNLLEGRVPEELYSI 518 (631)
Q Consensus 501 ~ls~N~l~g~iP~~l~~~ 518 (631)
-|.+|.|. .-|..+...
T Consensus 240 ~LenNPLq-SPPAqIC~k 256 (722)
T KOG0532|consen 240 QLENNPLQ-SPPAQICEK 256 (722)
T ss_pred eeccCCCC-CChHHHHhc
Confidence 99999998 777777543
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.47 E-value=1.4e-07 Score=108.16 Aligned_cols=77 Identities=32% Similarity=0.349 Sum_probs=49.2
Q ss_pred cccccccccccCCCCCCCccccccccccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeec
Q 006793 449 NLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 528 (631)
Q Consensus 449 ~L~~L~Ls~N~l~g~iP~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~ 528 (631)
+|+.|+|++|.|+ .+|... ++|+.|++++|+|+ .+|... .+|+.|++++|+|+ .+|..+..+. +|..++++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l~--s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~-~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVLP--SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLS-SETTVNLE 453 (788)
T ss_pred ccceEEecCCccc-CCCCcc--cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhcc-CCCeEECC
Confidence 4566666666666 355322 45666777777766 366432 35667777777776 6777776665 67778888
Q ss_pred CCCCCC
Q 006793 529 GNKGLC 534 (631)
Q Consensus 529 ~N~~lc 534 (631)
+|++.+
T Consensus 454 ~N~Ls~ 459 (788)
T PRK15387 454 GNPLSE 459 (788)
T ss_pred CCCCCc
Confidence 887554
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.46 E-value=6.6e-08 Score=91.48 Aligned_cols=103 Identities=31% Similarity=0.427 Sum_probs=39.3
Q ss_pred eEEEEEEecCCCCcccCchhhc-ccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccC-CCCCCCCEE
Q 006793 424 VVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL-TSSSKLQLV 500 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L 500 (631)
..++.|+|++|.++ .| +.++ .+.+|+.|+|++|.++ .++ .+.. +.|+.|++++|+++ .+.+.+ ..+++|+.|
T Consensus 19 ~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 35789999999998 34 3465 5789999999999999 675 4666 99999999999999 576555 358999999
Q ss_pred EcccCcCccccc-hhhhhccCCCCeEeecCCCC
Q 006793 501 LLNNNLLEGRVP-EELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 501 ~ls~N~l~g~iP-~~l~~~~~~L~~l~l~~N~~ 532 (631)
++++|++...-- ..+..+ ++|+.|++.+||.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l-~~L~~L~L~~NPv 125 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSL-PKLRVLSLEGNPV 125 (175)
T ss_dssp E-TTS---SCCCCGGGGG--TT--EEE-TT-GG
T ss_pred ECcCCcCCChHHhHHHHcC-CCcceeeccCCcc
Confidence 999999973211 334344 4889999999993
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.43 E-value=2.8e-07 Score=106.15 Aligned_cols=97 Identities=26% Similarity=0.365 Sum_probs=71.4
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCccccccccccccccccCCCCCCccCCCCCCCCEEEccc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~ 504 (631)
.++.|+|++|.|+ .+|..+. ++|+.|+|++|+|+ .+|..+. .+|+.|+|++|++. .+|..+. ++|+.|++++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~-~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP-DTIQEMELSINRIT-ELPERLP--SALQSLDLFH 271 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh-ccccEEECcCCccC-cCChhHh--CCCCEEECcC
Confidence 4778888888888 5666554 47888888888888 6776443 56888888888887 6777664 4788888888
Q ss_pred CcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 505 NLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 505 N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
|+|+ .+|..+. .+|+.|++++|.+.
T Consensus 272 N~L~-~LP~~l~---~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 272 NKIS-CLPENLP---EELRYLSVYDNSIR 296 (754)
T ss_pred CccC-ccccccC---CCCcEEECCCCccc
Confidence 8887 5776543 36778888888754
No 27
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=1.8e-07 Score=72.65 Aligned_cols=58 Identities=38% Similarity=0.570 Sum_probs=31.0
Q ss_pred cccccccccccCCCCCCC-cccc-ccccccccccccCCCCCCccCCCCCCCCEEEcccCcC
Q 006793 449 NLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLL 507 (631)
Q Consensus 449 ~L~~L~Ls~N~l~g~iP~-~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l 507 (631)
+|+.|++++|+++ .+|+ .+.. ++|+.|++++|+++..-|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3455555555555 3443 2333 5555555555555544444556666666666666653
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.15 E-value=4e-07 Score=93.49 Aligned_cols=97 Identities=21% Similarity=0.200 Sum_probs=75.8
Q ss_pred ccCch-hhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhh
Q 006793 438 GYISD-KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515 (631)
Q Consensus 438 g~~p~-~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l 515 (631)
+..|. .|..|++|+.|+|++|++++.-+..+.. ..|++|.|..|++.-.--..|.+++.|+.|+|.+|+++-.-|..+
T Consensus 263 ~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF 342 (498)
T KOG4237|consen 263 SICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF 342 (498)
T ss_pred CcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence 34444 6888999999999999999655566666 889999999999874444567788999999999999995556555
Q ss_pred hhccCCCCeEeecCCCCCCC
Q 006793 516 YSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 516 ~~~~~~L~~l~l~~N~~lc~ 535 (631)
..+. .|..|++-.|||.|.
T Consensus 343 ~~~~-~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 343 QTLF-SLSTLNLLSNPFNCN 361 (498)
T ss_pred cccc-eeeeeehccCcccCc
Confidence 4444 788999999999984
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.13 E-value=6.4e-07 Score=69.46 Aligned_cols=59 Identities=34% Similarity=0.474 Sum_probs=51.0
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccC
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF 483 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l 483 (631)
+|+.|+|++|.++...+..|.++++|++|++++|.++..-|..+.. ++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3788999999999766678999999999999999999444455667 9999999999985
No 30
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.11 E-value=7.8e-08 Score=105.09 Aligned_cols=106 Identities=24% Similarity=0.233 Sum_probs=83.6
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
+.++.|+|++|+++. + +.+..|++|++|||+.|.|+ .+|..-.. -.|+.|.|++|.++ ++ ..+.+|.+|+.|||
T Consensus 187 ~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HHhhhhccchhhhhh-h-HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhccch
Confidence 457899999999984 2 37889999999999999999 88875333 56999999999988 33 35789999999999
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
+.|.|++.-.-........|..|.|.|||.-|
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 99999865432222222367889999999666
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.10 E-value=1.2e-06 Score=94.83 Aligned_cols=103 Identities=33% Similarity=0.471 Sum_probs=86.2
Q ss_pred eEEEEEEecCCCCcccCchhhcccc-cccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLS-NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~-~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
..++.|++.+|.++ .+++....+. +|+.|++++|.+. .+|..+.. ++|+.|++++|+++ .+|...+.++.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 35888999999998 7788888885 9999999999999 88877888 99999999999999 7888777889999999
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
+++|+++ .+|..+.... .|+.+.+++|+
T Consensus 193 ls~N~i~-~l~~~~~~~~-~L~~l~~~~N~ 220 (394)
T COG4886 193 LSGNKIS-DLPPEIELLS-ALEELDLSNNS 220 (394)
T ss_pred ccCCccc-cCchhhhhhh-hhhhhhhcCCc
Confidence 9999998 8887653332 57888888885
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.97 E-value=1.2e-06 Score=87.03 Aligned_cols=114 Identities=19% Similarity=0.184 Sum_probs=56.9
Q ss_pred ceeecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCcc
Q 006793 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS 490 (631)
Q Consensus 412 gv~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~ 490 (631)
.+.|-.....-++.++.|++|+|++. .+ ..+..|.+|+.||||+|.|+ .+-..-.. .+++.|.|+.|.+. .+ ..
T Consensus 295 ~I~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SG 369 (490)
T KOG1259|consen 295 LITQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SG 369 (490)
T ss_pred chhhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hh
Confidence 34443333333445566666666655 12 22555566666666666665 44333333 55566666666554 11 23
Q ss_pred CCCCCCCCEEEcccCcCccccc-hhhhhccCCCCeEeecCCC
Q 006793 491 LTSSSKLQLVLLNNNLLEGRVP-EELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 491 l~~l~~L~~L~ls~N~l~g~iP-~~l~~~~~~L~~l~l~~N~ 531 (631)
++.|-+|..||+++|++...-. ..+++++ -|+.+.+.+||
T Consensus 370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NP 410 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNP 410 (490)
T ss_pred hHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCC
Confidence 4555566666666666641110 1223332 44555666666
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.88 E-value=9.9e-06 Score=76.73 Aligned_cols=85 Identities=32% Similarity=0.328 Sum_probs=29.1
Q ss_pred hcccccccccccccccCCCCCCCccc-c-ccccccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCC
Q 006793 444 ISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVH 521 (631)
Q Consensus 444 ~~~l~~L~~L~Ls~N~l~g~iP~~~~-~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~ 521 (631)
+.+..+++.|+|++|.++ .|. .++ . .+|+.|+|++|.++ .++ .+..++.|+.|++++|+++ .+...+....++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 445667899999999999 664 465 4 78999999999999 565 5888999999999999999 666555544458
Q ss_pred CCeEeecCCCCC
Q 006793 522 GGAFDLSGNKGL 533 (631)
Q Consensus 522 L~~l~l~~N~~l 533 (631)
|+.|++++|...
T Consensus 90 L~~L~L~~N~I~ 101 (175)
T PF14580_consen 90 LQELYLSNNKIS 101 (175)
T ss_dssp --EEE-TTS---
T ss_pred CCEEECcCCcCC
Confidence 999999999854
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.84 E-value=4.1e-06 Score=87.52 Aligned_cols=107 Identities=28% Similarity=0.409 Sum_probs=62.7
Q ss_pred EEEEEEecCCCCccc----CchhhcccccccccccccccCCCC----CCCcccc-ccccccccccccCCCC----CCccC
Q 006793 425 VISQIDLGSQGLKGY----ISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDSL 491 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~-~~L~~L~Ls~N~l~g~----iP~~l 491 (631)
.|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++. ++..+.. ++|+.|+|++|.+++. ++..+
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 467777777777632 333455566777777777777643 2222233 4677777777776532 33345
Q ss_pred CCCCCCCEEEcccCcCccccchhhhhc----cCCCCeEeecCCC
Q 006793 492 TSSSKLQLVLLNNNLLEGRVPEELYSI----GVHGGAFDLSGNK 531 (631)
Q Consensus 492 ~~l~~L~~L~ls~N~l~g~iP~~l~~~----~~~L~~l~l~~N~ 531 (631)
..+++|++|++++|.+++.....+... ...|+.|++++|.
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 556677777777777765333333322 1356677776665
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.83 E-value=1.8e-06 Score=85.67 Aligned_cols=101 Identities=25% Similarity=0.289 Sum_probs=83.4
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
.|+.||||+|.++ .+-.+..-++.++.|++|+|.+. .+-. +.. .+|+.||||+|.|+ .+-.+-..|.+.+.|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 4789999999998 78888999999999999999998 5544 666 99999999999998 565555667889999999
Q ss_pred cCcCccccchhhhhccCCCCeEeecCCCC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
.|.+.. + +.+..+- +|..||+.+|+.
T Consensus 361 ~N~iE~-L-SGL~KLY-SLvnLDl~~N~I 386 (490)
T KOG1259|consen 361 QNKIET-L-SGLRKLY-SLVNLDLSSNQI 386 (490)
T ss_pred hhhHhh-h-hhhHhhh-hheeccccccch
Confidence 998862 1 3445554 678999999984
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.82 E-value=1.3e-05 Score=86.60 Aligned_cols=171 Identities=26% Similarity=0.390 Sum_probs=111.5
Q ss_pred eeEeecCCceEEEEEcccchhhhhh-ccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 006793 336 YVAKNLSSTELTVKLVPVVGAALIS-GLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (631)
Q Consensus 336 ~~~l~ls~n~L~~~l~~~~~~~~Ln-~lEi~~l~~~~~~~~p~~~~~l~~l~~~~~~~~~~~w~gdpc~~~~~~~w~gv~ 414 (631)
...+.+.++.++ .+++..+. +. .++.+.+..++...+|.++..+..|+......+. +.-+.
T Consensus 118 l~~L~l~~n~i~-~i~~~~~~--~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~---------------l~~l~ 179 (394)
T COG4886 118 LTSLDLDNNNIT-DIPPLIGL--LKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND---------------LSDLP 179 (394)
T ss_pred eeEEecCCcccc-cCcccccc--chhhcccccccccchhhhhhhhhccccccccccCCch---------------hhhhh
Confidence 444555555554 55554443 32 5666777777777777666666666653221110 00000
Q ss_pred ecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCC
Q 006793 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (631)
Q Consensus 415 c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~ 493 (631)
...+.+..|+.|++++|.++ .+|..+..+..|+.|.+++|.+. .++..+.. .++..|.+.+|++. .+|..++.
T Consensus 180 ---~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~ 253 (394)
T COG4886 180 ---KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN 253 (394)
T ss_pred ---hhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcc
Confidence 00002345778888888888 77777777777888888888655 56777777 88888888888887 45777888
Q ss_pred CCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 494 l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
+++|+.|++++|+++ .++. +..+. +++.+++++|...
T Consensus 254 l~~l~~L~~s~n~i~-~i~~-~~~~~-~l~~L~~s~n~~~ 290 (394)
T COG4886 254 LSNLETLDLSNNQIS-SISS-LGSLT-NLRELDLSGNSLS 290 (394)
T ss_pred ccccceecccccccc-cccc-ccccC-ccCEEeccCcccc
Confidence 888888888888887 5555 44443 6788888888754
No 37
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.81 E-value=1.6e-06 Score=76.89 Aligned_cols=88 Identities=23% Similarity=0.412 Sum_probs=59.8
Q ss_pred EEEEEEecCCCCcccCchhhcc-cccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 425 VISQIDLGSQGLKGYISDKISL-LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~-l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
.|+.++|++|.|. .+|+.|.. .+.++.|+|++|.++ .+|.++.. +.|+.|+++.|.|. ..|.-+..|.+|-.||.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 4666777777777 44444443 346777777777777 77777666 77777777777777 56766666777777777
Q ss_pred ccCcCccccchhhh
Q 006793 503 NNNLLEGRVPEELY 516 (631)
Q Consensus 503 s~N~l~g~iP~~l~ 516 (631)
.+|... +||-.++
T Consensus 131 ~~na~~-eid~dl~ 143 (177)
T KOG4579|consen 131 PENARA-EIDVDLF 143 (177)
T ss_pred CCCccc-cCcHHHh
Confidence 777766 6665543
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.80 E-value=3e-06 Score=75.11 Aligned_cols=101 Identities=24% Similarity=0.356 Sum_probs=81.7
Q ss_pred EEEEEecCCCCcccCchhhc---ccccccccccccccCCCCCCCcccc--ccccccccccccCCCCCCccCCCCCCCCEE
Q 006793 426 ISQIDLGSQGLKGYISDKIS---LLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~---~l~~L~~L~Ls~N~l~g~iP~~~~~--~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (631)
+..++|+++.|. .+++... ....|+..+|++|.|. ..|+.+.. +.++.|+|++|+++ .+|.++..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 566888888875 5666544 4456677799999999 88888776 68999999999999 899999999999999
Q ss_pred EcccCcCccccchhhhhccCCCCeEeecCCC
Q 006793 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 501 ~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
+++.|.|. ..|.-++.+. ++..|+..+|.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~-~l~~Lds~~na 134 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLI-KLDMLDSPENA 134 (177)
T ss_pred ccccCccc-cchHHHHHHH-hHHHhcCCCCc
Confidence 99999998 7777777754 56667766665
No 39
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.80 E-value=3.5e-05 Score=94.40 Aligned_cols=107 Identities=23% Similarity=0.247 Sum_probs=82.9
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCccccccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
..|+.|+|++|...+.+|.++++|++|+.|+|++|..-+.+|..+.-++|+.|+|++|.....+|.. ..+|+.|+|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 4688999999988888999999999999999999765558888763388888888887655566653 3578888888
Q ss_pred cCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
+|.++ .+|..+..+. +|+.|++++++.+..
T Consensus 855 ~n~i~-~iP~si~~l~-~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFS-NLSFLDMNGCNNLQR 884 (1153)
T ss_pred CCCCc-cChHHHhcCC-CCCEEECCCCCCcCc
Confidence 88887 6787776665 778888887554443
No 40
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.79 E-value=3e-05 Score=95.01 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=76.7
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
.+|+.|+|++|.+. .++..+..+++|+.|+|+++..-+.+|. +.. ++|+.|+|++|.....+|..++++++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 45778888888876 5677777888888888887665457775 555 78888888887666678888888888888888
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
++|..-+.+|..+ .+ .+|+.|++++|..+.
T Consensus 689 ~~c~~L~~Lp~~i-~l-~sL~~L~Lsgc~~L~ 718 (1153)
T PLN03210 689 SRCENLEILPTGI-NL-KSLYRLNLSGCSRLK 718 (1153)
T ss_pred CCCCCcCccCCcC-CC-CCCCEEeCCCCCCcc
Confidence 8765545777654 22 366777777765443
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.76 E-value=5.7e-06 Score=86.43 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=15.2
Q ss_pred hhhhccCCchhhhHHHhhhccCC
Q 006793 601 RNRYQRQKSLMLLEMESQHAKGL 623 (631)
Q Consensus 601 ~~~~~~~~~l~~ldl~~n~~~~~ 623 (631)
.....++.+|+.+|++.|+++..
T Consensus 271 ~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 271 AEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHhcCCCccEEECCCCCCcHH
Confidence 34455557777778888777643
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=2.1e-05 Score=56.49 Aligned_cols=37 Identities=38% Similarity=0.580 Sum_probs=29.7
Q ss_pred ccccccccccccCCCCCCccCCCCCCCCEEEcccCcCc
Q 006793 471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508 (631)
Q Consensus 471 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~ 508 (631)
++|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46888888888888 68888888999999999999887
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.18 E-value=0.0001 Score=52.92 Aligned_cols=35 Identities=31% Similarity=0.531 Sum_probs=23.2
Q ss_pred EEEEEecCCCCcccCchhhcccccccccccccccCC
Q 006793 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG 461 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 461 (631)
|+.|+|++|+|+ .+|+++++|++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 566777777777 45666777777777777777766
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.06 E-value=0.00028 Score=83.09 Aligned_cols=103 Identities=26% Similarity=0.264 Sum_probs=70.1
Q ss_pred EEEEEEecCCC--CcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 425 VISQIDLGSQG--LKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 425 ~l~~L~Ls~n~--l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
.|++|-+..|. +.-.....|..++.|+.|||++|.=-+.+|..++. -+|++|+|++..+. .+|..+++|.+|.+||
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 46667777775 43233334666788888888877666678888887 77888888888877 6888888888888888
Q ss_pred cccCcCccccchhhhhccCCCCeEeecC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSG 529 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~ 529 (631)
+..+.-...+|.....+. +|+.|.+..
T Consensus 625 l~~~~~l~~~~~i~~~L~-~Lr~L~l~~ 651 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQ-SLRVLRLPR 651 (889)
T ss_pred cccccccccccchhhhcc-cccEEEeec
Confidence 877765544544444343 667766543
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.93 E-value=9.2e-05 Score=81.78 Aligned_cols=101 Identities=29% Similarity=0.322 Sum_probs=77.0
Q ss_pred EEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEccc
Q 006793 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~ 504 (631)
|...+.+.|.|. .+-.++.-+++|+.|||++|+++ .+- .+.. ..|++|||+.|.|. .+|.-=..-..|+.|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 555677778877 67778899999999999999999 444 5666 89999999999999 6876322223599999999
Q ss_pred CcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 505 NLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 505 N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
|-++.. ..+-++. +|..||++.|-+.
T Consensus 242 N~l~tL--~gie~Lk-sL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 242 NALTTL--RGIENLK-SLYGLDLSYNLLS 267 (1096)
T ss_pred cHHHhh--hhHHhhh-hhhccchhHhhhh
Confidence 999732 2233343 6788999999743
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.00022 Score=74.72 Aligned_cols=84 Identities=23% Similarity=0.243 Sum_probs=51.2
Q ss_pred ceeEEEEEEecCCCCccc--CchhhcccccccccccccccCCCCCCCcccc--ccccccccccccCCCCC-CccCCCCCC
Q 006793 422 TAVVISQIDLGSQGLKGY--ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSI-PDSLTSSSK 496 (631)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~--~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~--~~L~~L~Ls~N~l~g~i-P~~l~~l~~ 496 (631)
.++.++.||||.|-|... +-.-...|++|+.|+|+.|+|.-..-..... +.|+.|.|+++.|+-.- -..+..+++
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 345677888888877643 2334567788888888888877444443333 66777777777765211 111233456
Q ss_pred CCEEEcccC
Q 006793 497 LQLVLLNNN 505 (631)
Q Consensus 497 L~~L~ls~N 505 (631)
|+.|+|+.|
T Consensus 224 l~~L~L~~N 232 (505)
T KOG3207|consen 224 LEVLYLEAN 232 (505)
T ss_pred HHHhhhhcc
Confidence 666666666
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.64 E-value=0.0011 Score=78.26 Aligned_cols=84 Identities=27% Similarity=0.393 Sum_probs=74.6
Q ss_pred ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEE
Q 006793 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (631)
.++.|+.|||++|.=-+.+|.+++.|-+|++|+|+...+. .+|..+++ +.|.+||+..+.-...+|..+..|++|++|
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 3567999999998877899999999999999999999999 99999999 999999999988666677777779999999
Q ss_pred EcccCc
Q 006793 501 LLNNNL 506 (631)
Q Consensus 501 ~ls~N~ 506 (631)
.+..-.
T Consensus 648 ~l~~s~ 653 (889)
T KOG4658|consen 648 RLPRSA 653 (889)
T ss_pred Eeeccc
Confidence 986543
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.41 E-value=0.0014 Score=71.45 Aligned_cols=105 Identities=29% Similarity=0.324 Sum_probs=77.8
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+..++.|++..|.|.+ +...+..+++|++|+|++|.++ .+.. +.. ..|+.|++++|.++ .+. .+..+..|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~-l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEG-LSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccc-hhhccchhhheeccCcch-hcc-CCccchhhhccc
Confidence 4568899999999984 4444778999999999999998 5443 344 77999999999998 343 466688999999
Q ss_pred cccCcCccccchh-hhhccCCCCeEeecCCCCCC
Q 006793 502 LNNNLLEGRVPEE-LYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 502 ls~N~l~g~iP~~-l~~~~~~L~~l~l~~N~~lc 534 (631)
+++|++. .++.. +..+. .++.+.+.+|....
T Consensus 169 l~~n~i~-~ie~~~~~~~~-~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 169 LSYNRIV-DIENDELSELI-SLEELDLGGNSIRE 200 (414)
T ss_pred CCcchhh-hhhhhhhhhcc-chHHHhccCCchhc
Confidence 9999998 44431 22232 56677888887544
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0027 Score=66.84 Aligned_cols=82 Identities=23% Similarity=0.230 Sum_probs=36.9
Q ss_pred eEEEEEEecCCCCcc-cCchhhcccccccccccccccCCCCCCCccc--c-ccccccccccccCCCCCC--ccCCCCCCC
Q 006793 424 VVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLG--Q-QSLVRLDLSDNQFTGSIP--DSLTSSSKL 497 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~--~-~~L~~L~Ls~N~l~g~iP--~~l~~l~~L 497 (631)
.+++.|.|++++|+- .+-..+..+++|+.|+|..|.. ..-.... . ..|+.|||++|++- ..+ ...+.++.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~--~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI--ILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGL 273 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc--cceecchhhhhhHHhhccccCCccc-ccccccccccccch
Confidence 345555555555541 1222233445555555555541 1111111 1 44555555555554 233 223445555
Q ss_pred CEEEcccCcCc
Q 006793 498 QLVLLNNNLLE 508 (631)
Q Consensus 498 ~~L~ls~N~l~ 508 (631)
+.|+++.+.++
T Consensus 274 ~~Lnls~tgi~ 284 (505)
T KOG3207|consen 274 NQLNLSSTGIA 284 (505)
T ss_pred hhhhccccCcc
Confidence 55555555543
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.70 E-value=0.0022 Score=69.95 Aligned_cols=101 Identities=26% Similarity=0.269 Sum_probs=76.4
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
.+..+++..|.+.- +-..+..+++|+.|+|..|++. .+...+.. ++|+.|+|++|.++. +. .+..+..|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccc-cc-chhhccchhhheec
Confidence 35556677777763 4445788999999999999999 66665677 999999999999984 43 36677889999999
Q ss_pred cCcCccccchhhhhccCCCCeEeecCCCC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
+|.++ .+... .. ...|+.+++++|..
T Consensus 149 ~N~i~-~~~~~-~~-l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 149 GNLIS-DISGL-ES-LKSLKLLDLSYNRI 174 (414)
T ss_pred cCcch-hccCC-cc-chhhhcccCCcchh
Confidence 99997 33322 11 33678889999884
No 51
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=95.40 E-value=0.022 Score=40.50 Aligned_cols=35 Identities=40% Similarity=0.767 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHhcCC-C--CCCCCCC----CCCCCCCCCCCcceeec
Q 006793 376 PEQVIAMRALKESLRV-P--DRMGWNG----DPCAPTNWDAWEGITCH 416 (631)
Q Consensus 376 p~~~~~l~~l~~~~~~-~--~~~~w~g----dpc~~~~~~~w~gv~c~ 416 (631)
++|..+|++||..+.. + ...+|+. +| |.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~------C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDP------CSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-C------CCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCC------eeeccEEeC
Confidence 5789999999998874 3 2458964 34 589999995
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.94 E-value=0.016 Score=55.29 Aligned_cols=79 Identities=29% Similarity=0.411 Sum_probs=53.5
Q ss_pred EEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc--ccccccccccccCCCCCCc--cCCCCCCCCEEE
Q 006793 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLVL 501 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~--~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~ 501 (631)
...+||+.|.+.- -+.|..++.|.+|.|++|+++ .|-+.+.. ++|+.|.|.+|++. .+-+ .+..|++|++|.
T Consensus 44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 4567888888752 234556777888888888888 66666666 67888888888765 2211 245567777777
Q ss_pred cccCcCc
Q 006793 502 LNNNLLE 508 (631)
Q Consensus 502 ls~N~l~ 508 (631)
+-+|..+
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 7777665
No 53
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.69 E-value=0.0085 Score=35.99 Aligned_cols=18 Identities=61% Similarity=0.792 Sum_probs=7.8
Q ss_pred ccccccccccCCCCCCccC
Q 006793 473 LVRLDLSDNQFTGSIPDSL 491 (631)
Q Consensus 473 L~~L~Ls~N~l~g~iP~~l 491 (631)
|++|||++|+|+ .+|++|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 444433
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.66 E-value=0.068 Score=57.23 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=55.4
Q ss_pred EEEEEEecC-CCCcccCchhhcccccccccccccc-cCCCCCCCccccccccccccccccC--CCCCCccCCCC------
Q 006793 425 VISQIDLGS-QGLKGYISDKISLLSNLVNLNLSTN-SLGGTLPSGLGQQSLVRLDLSDNQF--TGSIPDSLTSS------ 494 (631)
Q Consensus 425 ~l~~L~Ls~-n~l~g~~p~~~~~l~~L~~L~Ls~N-~l~g~iP~~~~~~~L~~L~Ls~N~l--~g~iP~~l~~l------ 494 (631)
.|+.|.+++ +.+ ..+|..+. .+|+.|++++| .+. .+|+. |+.|+++.|.+ -+.+|..+..|
T Consensus 73 sLtsL~Lsnc~nL-tsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s-----Le~L~L~~n~~~~L~~LPssLk~L~I~~~n 143 (426)
T PRK15386 73 ELTEITIENCNNL-TTLPGSIP--EGLEKLTVCHCPEIS-GLPES-----VRSLEIKGSATDSIKNVPNGLTSLSINSYN 143 (426)
T ss_pred CCcEEEccCCCCc-ccCCchhh--hhhhheEccCccccc-ccccc-----cceEEeCCCCCcccccCcchHhheeccccc
Confidence 478888876 444 35555442 57888888887 555 56653 55555555442 22455544333
Q ss_pred ------------CCCCEEEcccCcCccccchhhhhccCCCCeEeecCC
Q 006793 495 ------------SKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGN 530 (631)
Q Consensus 495 ------------~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N 530 (631)
++|++|++++|... .+|.. ++.+|+.|.++.|
T Consensus 144 ~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~---LP~SLk~L~ls~n 187 (426)
T PRK15386 144 PENQARIDNLISPSLKTLSLTGCSNI-ILPEK---LPESLQSITLHIE 187 (426)
T ss_pred cccccccccccCCcccEEEecCCCcc-cCccc---ccccCcEEEeccc
Confidence 36777888777655 34433 2346778887765
No 55
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.58 E-value=0.0043 Score=60.20 Aligned_cols=83 Identities=23% Similarity=0.276 Sum_probs=75.0
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
.+.+.||++.|++. .+...++.++.|+.||++.|.+. .+|..++. ..+..+++..|+++ ..|.+++.++.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 46889999999987 56677888999999999999999 89999988 88999999999999 89999999999999999
Q ss_pred ccCcCcc
Q 006793 503 NNNLLEG 509 (631)
Q Consensus 503 s~N~l~g 509 (631)
-.|.|..
T Consensus 119 k~~~~~~ 125 (326)
T KOG0473|consen 119 KKTEFFR 125 (326)
T ss_pred ccCcchH
Confidence 9998763
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.0081 Score=60.37 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=40.5
Q ss_pred CCcceeecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcc-cc-cccccccccccc
Q 006793 409 AWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQ 482 (631)
Q Consensus 409 ~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~-~~-~~L~~L~Ls~N~ 482 (631)
.|+.+.|-.. .++.|+.|+|+.|.|...|-..-..+.+|+.|-|.+-.|...--.++ .. +.++.|++|.|+
T Consensus 85 dWseI~~ile---~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 85 DWSEIGAILE---QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred cHHHHHHHHh---cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 5666666432 45667777777777764433322345566666666666554433332 23 666667777663
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.05 E-value=0.039 Score=54.69 Aligned_cols=98 Identities=21% Similarity=0.204 Sum_probs=66.8
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccc--cCCCCCCCcccc-ccccccccccccCCCCCCccCC---CCCCCC
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTN--SLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT---SSSKLQ 498 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N--~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~---~l~~L~ 498 (631)
.++.|++.+..++.. ..+-.|++|+.|.+|.| +.++.++..... ++|++|+|++|++. +++.+. .+.+|.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchh
Confidence 355666666666521 23556889999999999 777777776666 99999999999986 355444 456677
Q ss_pred EEEcccCcCcccc--chhhhhccCCCCeEe
Q 006793 499 LVLLNNNLLEGRV--PEELYSIGVHGGAFD 526 (631)
Q Consensus 499 ~L~ls~N~l~g~i--P~~l~~~~~~L~~l~ 526 (631)
.||+.+|.-+..- -...+.+.++|+.|+
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 8888888766421 134555656666665
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.70 E-value=0.033 Score=55.22 Aligned_cols=59 Identities=27% Similarity=0.272 Sum_probs=29.0
Q ss_pred eEEEEEEecCC--CCcccCchhhcccccccccccccccCCCCCCCcccc----ccccccccccccCC
Q 006793 424 VVISQIDLGSQ--GLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ----QSLVRLDLSDNQFT 484 (631)
Q Consensus 424 ~~l~~L~Ls~n--~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~----~~L~~L~Ls~N~l~ 484 (631)
+.|+.|.+|.| +..+.++.-...+++|++|+|+.|++. +++.+.. .+|..|++.+|.-+
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchhhhhcccCCcc
Confidence 34555555555 444444444444555555555555554 1332222 44555555555433
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.63 E-value=0.057 Score=53.83 Aligned_cols=82 Identities=33% Similarity=0.429 Sum_probs=47.1
Q ss_pred EEEEEecCCCCccc----CchhhcccccccccccccccCCCCC----CCc-------ccc-ccccccccccccCCCCCCc
Q 006793 426 ISQIDLGSQGLKGY----ISDKISLLSNLVNLNLSTNSLGGTL----PSG-------LGQ-QSLVRLDLSDNQFTGSIPD 489 (631)
Q Consensus 426 l~~L~Ls~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~i----P~~-------~~~-~~L~~L~Ls~N~l~g~iP~ 489 (631)
++.++||+|-+... +...|.+-.+|+..++|.- ++|.. |+. +-. ++|+..+||+|-|....|+
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 67788888888643 3444555566666666643 22232 221 112 5666677777766655555
Q ss_pred cCC----CCCCCCEEEcccCcCc
Q 006793 490 SLT----SSSKLQLVLLNNNLLE 508 (631)
Q Consensus 490 ~l~----~l~~L~~L~ls~N~l~ 508 (631)
.++ .-+.|.+|.|++|.+.
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCC
Confidence 433 3456667777766653
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.57 E-value=0.078 Score=50.71 Aligned_cols=79 Identities=28% Similarity=0.387 Sum_probs=58.6
Q ss_pred ccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCC-CCCCCEEEcccCcCc--cccchhhhhccCCCC
Q 006793 448 SNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS-SSKLQLVLLNNNLLE--GRVPEELYSIGVHGG 523 (631)
Q Consensus 448 ~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~-l~~L~~L~ls~N~l~--g~iP~~l~~~~~~L~ 523 (631)
.....+||++|.+. .++. +.. +.|+.|.|++|+++- |-+.+.. ++.|+.|.|.+|++. |.+ ..+..+. .|+
T Consensus 42 d~~d~iDLtdNdl~-~l~~-lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p-~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDN-LPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCP-KLE 116 (233)
T ss_pred cccceecccccchh-hccc-CCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhc-chhccCC-ccc
Confidence 45678999999997 5544 445 899999999999994 4444554 578999999999986 222 1233343 788
Q ss_pred eEeecCCC
Q 006793 524 AFDLSGNK 531 (631)
Q Consensus 524 ~l~l~~N~ 531 (631)
.|.+-+|+
T Consensus 117 ~Ltll~Np 124 (233)
T KOG1644|consen 117 YLTLLGNP 124 (233)
T ss_pred eeeecCCc
Confidence 99999998
No 61
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=93.48 E-value=0.07 Score=53.14 Aligned_cols=66 Identities=30% Similarity=0.542 Sum_probs=52.9
Q ss_pred hHHHHHHHhcCCCceEEEEecCCCCceEEEEEeeccccccccCCceEEEEEECC-e-eccccceeccCCC
Q 006793 261 PMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVND-K-NVTRVDIFNSVGS 328 (631)
Q Consensus 261 P~~Vy~TA~~~~~~lt~~~~v~~~~~y~v~LhFaEi~~~~~~~~~R~F~V~in~-~-~l~~~di~~~~g~ 328 (631)
-..+|||+|.....+.|..|.+..++|-+.|-|||+. ..+.+..+|+|.+|. - .+..+|++...|+
T Consensus 107 d~ily~ter~neetFgyd~pik~dgdyalvlkfaevy--F~~~q~kvfdvrln~sh~vVk~ldi~~~vg~ 174 (355)
T KOG3593|consen 107 DIILYQTERYNEETFGYDVPIKEDGDYALVLKFAEVY--FKTCQHKVFDVRLNCSHCVVKALDIFDQVGD 174 (355)
T ss_pred hhhhhhhcccchhhhcccccccCCCceehhhhHHHHH--HHhhhhhheeeeeccceeEEeccchhhhcCC
Confidence 3479999997655577888888888999999999976 345688999999994 3 6788899887764
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.14 E-value=0.035 Score=33.30 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=17.2
Q ss_pred CCCEEEcccCcCccccchhhh
Q 006793 496 KLQLVLLNNNLLEGRVPEELY 516 (631)
Q Consensus 496 ~L~~L~ls~N~l~g~iP~~l~ 516 (631)
+|++|||++|+|+ .+|+.+.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 5899999999999 8998754
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.13 E-value=0.11 Score=55.75 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=41.8
Q ss_pred eEEEEEEecCC-CCcccCchhhcccccccccccccccCC--CCCCCcccc-------------------ccccccccccc
Q 006793 424 VVISQIDLGSQ-GLKGYISDKISLLSNLVNLNLSTNSLG--GTLPSGLGQ-------------------QSLVRLDLSDN 481 (631)
Q Consensus 424 ~~l~~L~Ls~n-~l~g~~p~~~~~l~~L~~L~Ls~N~l~--g~iP~~~~~-------------------~~L~~L~Ls~N 481 (631)
..|+.|++++| .+. .+|+. |+.|+++.|.+. +.+|+.+.. .+|+.|++++|
T Consensus 94 ~nLe~L~Ls~Cs~L~-sLP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c 166 (426)
T PRK15386 94 EGLEKLTVCHCPEIS-GLPES------VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGC 166 (426)
T ss_pred hhhhheEccCccccc-ccccc------cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCC
Confidence 35778888877 444 45544 334444443321 134433321 36777888877
Q ss_pred cCCCCCCccCCCCCCCCEEEcccCc
Q 006793 482 QFTGSIPDSLTSSSKLQLVLLNNNL 506 (631)
Q Consensus 482 ~l~g~iP~~l~~l~~L~~L~ls~N~ 506 (631)
... .+|..+. .+|+.|+++.|.
T Consensus 167 ~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 167 SNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred Ccc-cCccccc--ccCcEEEecccc
Confidence 765 4555444 578888887763
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.62 E-value=0.064 Score=55.26 Aligned_cols=107 Identities=20% Similarity=0.159 Sum_probs=72.4
Q ss_pred EEEEEEecCCCCcccCch----hhcccccccccccccccCCCCCC--------------Ccccc-ccccccccccccCCC
Q 006793 425 VISQIDLGSQGLKGYISD----KISLLSNLVNLNLSTNSLGGTLP--------------SGLGQ-QSLVRLDLSDNQFTG 485 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~----~~~~l~~L~~L~Ls~N~l~g~iP--------------~~~~~-~~L~~L~Ls~N~l~g 485 (631)
+|+.||||.|.|...-++ -+..+..|++|.|.+|.+. ..- .-++. +.|+++...+|++.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle- 170 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE- 170 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-
Confidence 589999999999754444 3556789999999999886 221 12233 67899999999886
Q ss_pred CCCc-----cCCCCCCCCEEEcccCcCc--cc-cchhhhhccCCCCeEeecCCCCC
Q 006793 486 SIPD-----SLTSSSKLQLVLLNNNLLE--GR-VPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 486 ~iP~-----~l~~l~~L~~L~ls~N~l~--g~-iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
.-+. .+...+.|+.+.++.|.+. |. +-..-+...++|+.||+.+|-|.
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 3332 2445678888888888774 21 11122233457888888888754
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.48 E-value=0.098 Score=53.96 Aligned_cols=107 Identities=20% Similarity=0.306 Sum_probs=56.1
Q ss_pred EEEEEEecCCCCc--c--cCchhhcccccccccccccccCCCC----CCCcccc-ccccccccccccCCCCCCc----cC
Q 006793 425 VISQIDLGSQGLK--G--YISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGSIPD----SL 491 (631)
Q Consensus 425 ~l~~L~Ls~n~l~--g--~~p~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~-~~L~~L~Ls~N~l~g~iP~----~l 491 (631)
.|..+.+..|.+. | .+...+..+++|+.|||..|.|+-. +-..+.. ++|+.|+++++.+.-.=-. .+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 4566666666654 1 1234566677777777777776622 1222333 5566777777666432111 11
Q ss_pred -CCCCCCCEEEcccCcCccc----cchhhhhccCCCCeEeecCCCC
Q 006793 492 -TSSSKLQLVLLNNNLLEGR----VPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 492 -~~l~~L~~L~ls~N~l~g~----iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
...++|++|.|.+|.++-. +-..+.. .+.|..|++++|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence 1245677777777766521 1112222 23566667777764
No 66
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.40 E-value=0.0053 Score=59.57 Aligned_cols=88 Identities=23% Similarity=0.242 Sum_probs=76.3
Q ss_pred hhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccC
Q 006793 442 DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGV 520 (631)
Q Consensus 442 ~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~ 520 (631)
.++......+.|||+.|++. .+-..++. +.|..||++-|++. .+|..++++..+..+++..|+++ ..|.++....
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~- 111 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP- 111 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC-
Confidence 46777788899999999998 66666777 89999999999998 79999999999999999999998 8899888776
Q ss_pred CCCeEeecCCCCC
Q 006793 521 HGGAFDLSGNKGL 533 (631)
Q Consensus 521 ~L~~l~l~~N~~l 533 (631)
+++.+++-+|++.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 7888888888843
No 67
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=92.13 E-value=0.12 Score=51.41 Aligned_cols=140 Identities=19% Similarity=0.252 Sum_probs=84.2
Q ss_pred HhhhhhcccCCCCccEEEccCCCCCccCCCCceEeeCCCCeecCCccc------cc-CCCCCCCCCCceeeecCCCCCCC
Q 006793 17 VLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSI------VS-EPLHFRFPHEKTLRYFPPSSGKK 89 (631)
Q Consensus 17 ~~~~~~~~~~~~~~~~~IdCG~~~~~~d~~~~~w~~Dd~~~~~g~~~~------~~-~~~~~~~~~~~t~R~F~~~~g~~ 89 (631)
++.++.+++-|...-+.++||+.. .+|..|+.|-.|..- ..|.... +. .........|+|.||-.. .
T Consensus 47 v~~ga~Taa~~~svI~aVncGgda-avd~ygI~f~aD~~~-~VGrasd~G~~l~i~~raeeed~ily~ter~nee----t 120 (355)
T KOG3593|consen 47 VVRGAPTAALPSSVIPAVNCGGDA-AVDNYGIRFAADPLE-GVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE----T 120 (355)
T ss_pred eeccCccccCchhhhheeccCChh-hhcccceEeeccccc-cccccCCccceeeccccCChhhhhhhhhcccchh----h
Confidence 444455566655445779999863 477888999885411 1121110 10 111223468999999764 3
Q ss_pred ceEEeecCCCcceEEEEEe--ecCCCCCCCCCCceEEEEC-CEEEeecCCCCccccCCCceEEEEEEE-eeCCeeeEEEe
Q 006793 90 NCYIIPNLPPGRYYIRTFT--VYDNYDGKSHSPSFDVSVE-GTLVFSWRSPWPEGLARDGAYSDLFAF-VKDGELDLCFY 165 (631)
Q Consensus 90 ~cY~~pv~~~g~ylvRl~F--~y~nyd~~~~~~~Fdv~i~-~~~~l~~~~~~~~~~~~~~~~~e~i~~-~~~~~l~v~~~ 165 (631)
|.|..|+...|.|-+=+.| .| |+.- ..-.|||-++ ...++..-|++...+....+.-|++.. ...+.|.+|-.
T Consensus 121 Fgyd~pik~dgdyalvlkfaevy--F~~~-q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~~~i~~gkls~~ge 197 (355)
T KOG3593|consen 121 FGYDVPIKEDGDYALVLKFAEVY--FKTC-QHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIPCLIGQGKLSVCGE 197 (355)
T ss_pred hcccccccCCCceehhhhHHHHH--HHhh-hhhheeeeeccceeEEeccchhhhcCCCcccccceEEEEEcCceEEEEee
Confidence 7899999888999888989 34 3321 1347999999 888888888765543332333344432 23344555543
No 68
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.06 E-value=0.1 Score=60.20 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=59.2
Q ss_pred eeEEEEEEecCCCCc-ccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCC-CCCccCCCCCCCCE
Q 006793 423 AVVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-SIPDSLTSSSKLQL 499 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~ 499 (631)
++.|++|.+++-.+. ..+..-..++++|..||+|+.+++ .+ ..++. ++|+.|.+.+=.+.- ..=..+.+|++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 455777777766553 223344556677777777777766 33 45566 777777666655541 11123556777777
Q ss_pred EEcccCcCccc--cchhh---hhccCCCCeEeecCCC
Q 006793 500 VLLNNNLLEGR--VPEEL---YSIGVHGGAFDLSGNK 531 (631)
Q Consensus 500 L~ls~N~l~g~--iP~~l---~~~~~~L~~l~l~~N~ 531 (631)
||+|....... +.... +...++|+.||.++..
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 77776554311 12111 1123466677766554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.86 E-value=0.027 Score=56.28 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=43.3
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCc--ccc-ccccccccccccCCCCCCcc
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG--LGQ-QSLVRLDLSDNQFTGSIPDS 490 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~--~~~-~~L~~L~Ls~N~l~g~iP~~ 490 (631)
++.|+.|.||-|.++.. ..+..+++|+.|+|..|.|. .+-+. +.+ ++|+.|.|..|.-.|.-+..
T Consensus 40 Mp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQN 107 (388)
T ss_pred cccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchh
Confidence 45677888888888732 23667788888888888776 33322 334 77777777777777665543
No 70
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=89.73 E-value=0.078 Score=61.21 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=75.2
Q ss_pred EEEEEEecCCCCc-ccCchhhc-ccccccccccccccCCCCC-CCcccc-ccccccccccccCCCCCCccCCCCCCCCEE
Q 006793 425 VISQIDLGSQGLK-GYISDKIS-LLSNLVNLNLSTNSLGGTL-PSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 425 ~l~~L~Ls~n~l~-g~~p~~~~-~l~~L~~L~Ls~N~l~g~i-P~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (631)
+|+.|++++...- ..-|..++ .||+|+.|.+++-.+...- -....+ ++|..||+|+.+++ .+ ..++.|++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHH
Confidence 4788888886543 22334444 4799999999987775322 112223 89999999999988 45 678899999999
Q ss_pred EcccCcCcc-ccchhhhhccCCCCeEeecCCCCC
Q 006793 501 LLNNNLLEG-RVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 501 ~ls~N~l~g-~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
.+.+=.|.. ..=..++.+. +|+.||+|.....
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~-~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLK-KLRVLDISRDKNN 233 (699)
T ss_pred hccCCCCCchhhHHHHhccc-CCCeeeccccccc
Confidence 888766652 2234677776 8999999987643
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.61 E-value=0.28 Score=27.34 Aligned_cols=13 Identities=38% Similarity=0.437 Sum_probs=5.1
Q ss_pred CCCEEEcccCcCc
Q 006793 496 KLQLVLLNNNLLE 508 (631)
Q Consensus 496 ~L~~L~ls~N~l~ 508 (631)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555544
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.55 E-value=0.16 Score=28.35 Aligned_cols=11 Identities=55% Similarity=0.794 Sum_probs=3.5
Q ss_pred ccccccccccC
Q 006793 473 LVRLDLSDNQF 483 (631)
Q Consensus 473 L~~L~Ls~N~l 483 (631)
|+.|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.37 E-value=0.4 Score=29.78 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=15.7
Q ss_pred CCCCCEEEcccCcCccccchhhh
Q 006793 494 SSKLQLVLLNNNLLEGRVPEELY 516 (631)
Q Consensus 494 l~~L~~L~ls~N~l~g~iP~~l~ 516 (631)
|++|+.|+|++|+++ .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 457788888888887 6676654
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.37 E-value=0.4 Score=29.78 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=15.7
Q ss_pred CCCCCEEEcccCcCccccchhhh
Q 006793 494 SSKLQLVLLNNNLLEGRVPEELY 516 (631)
Q Consensus 494 l~~L~~L~ls~N~l~g~iP~~l~ 516 (631)
|++|+.|+|++|+++ .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 457788888888887 6676654
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.61 E-value=0.47 Score=29.46 Aligned_cols=18 Identities=50% Similarity=0.776 Sum_probs=10.0
Q ss_pred ccccccccccccCCCCCCC
Q 006793 448 SNLVNLNLSTNSLGGTLPS 466 (631)
Q Consensus 448 ~~L~~L~Ls~N~l~g~iP~ 466 (631)
++|+.|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 44555666666655 4544
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.61 E-value=0.47 Score=29.46 Aligned_cols=18 Identities=50% Similarity=0.776 Sum_probs=10.0
Q ss_pred ccccccccccccCCCCCCC
Q 006793 448 SNLVNLNLSTNSLGGTLPS 466 (631)
Q Consensus 448 ~~L~~L~Ls~N~l~g~iP~ 466 (631)
++|+.|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 44555666666655 4544
No 77
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.55 E-value=0.25 Score=50.00 Aligned_cols=83 Identities=25% Similarity=0.264 Sum_probs=52.5
Q ss_pred EEEEEEecCCCCcc--cCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCC-CCccCCCCCCCCEE
Q 006793 425 VISQIDLGSQGLKG--YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS-IPDSLTSSSKLQLV 500 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g--~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L 500 (631)
.++.|||.+|.++. .+..-+.+|++|+.|+|+.|.|...|-..-.. ++|+.|-|.+..|.-. .-..+..++.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 35667777777763 34555667778888888888777544433233 6777777777665432 22334556777777
Q ss_pred EcccCcC
Q 006793 501 LLNNNLL 507 (631)
Q Consensus 501 ~ls~N~l 507 (631)
.+|.|++
T Consensus 152 HmS~N~~ 158 (418)
T KOG2982|consen 152 HMSDNSL 158 (418)
T ss_pred hhccchh
Confidence 7777744
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=83.86 E-value=0.93 Score=45.48 Aligned_cols=106 Identities=20% Similarity=0.274 Sum_probs=60.9
Q ss_pred EEEEEEecCCCCcccCchhhc----ccccccccccccccCCCCCCC-ccc-------------c-ccccccccccccCCC
Q 006793 425 VISQIDLGSQGLKGYISDKIS----LLSNLVNLNLSTNSLGGTLPS-GLG-------------Q-QSLVRLDLSDNQFTG 485 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~----~l~~L~~L~Ls~N~l~g~iP~-~~~-------------~-~~L~~L~Ls~N~l~g 485 (631)
+++..+||.|.+....|+.++ .-+.|++|.|++|.+. ++-. .++ . +.|+......|+|.
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 577788888888776666544 4467888888888776 3321 122 2 56777777777765
Q ss_pred CCCccC-----CCCCCCCEEEcccCcCccc-----cchhhhhccCCCCeEeecCCCCC
Q 006793 486 SIPDSL-----TSSSKLQLVLLNNNLLEGR-----VPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 486 ~iP~~l-----~~l~~L~~L~ls~N~l~g~-----iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
.-|... ..-..|+.+.+..|.+.-. +--.++.+ .+|+.||+..|-+.
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft 227 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFT 227 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHh-Ccceeeeccccchh
Confidence 233321 1123566666766665411 00112222 35667777777643
No 79
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=82.66 E-value=0.051 Score=54.84 Aligned_cols=84 Identities=27% Similarity=0.312 Sum_probs=54.6
Q ss_pred EEEEEEecCCCCcc-cCchhhcccccccccccccccCCCCCCCcccc-cccccccccccc-CCCC-CCccCCCCCCCCEE
Q 006793 425 VISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQ-FTGS-IPDSLTSSSKLQLV 500 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~-l~g~-iP~~l~~l~~L~~L 500 (631)
+|+.||||+..++. ++-.-+..+.+|+.|.|.+++|...|-..+.. .+|+.|||+... |+.. .---+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47778888777763 33334566777888888888888777777777 778888877643 3310 11124556777777
Q ss_pred EcccCcCc
Q 006793 501 LLNNNLLE 508 (631)
Q Consensus 501 ~ls~N~l~ 508 (631)
+|+-..++
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 77766654
No 80
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.07 E-value=0.27 Score=49.35 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=66.9
Q ss_pred EEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCc--cCCCCCCCCEEEc
Q 006793 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLVLL 502 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~l 502 (631)
++.|++-+++|... .....++.|+.|.||-|+++ .+-+ +.. ++|++|.|..|.+. .+-+ -+.++++|+.|+|
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p-l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP-LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh-HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhh
Confidence 33444444444421 23457899999999999999 5544 344 99999999999887 3432 3678899999999
Q ss_pred ccCcCccccchhh----hhccCCCCeEe
Q 006793 503 NNNLLEGRVPEEL----YSIGVHGGAFD 526 (631)
Q Consensus 503 s~N~l~g~iP~~l----~~~~~~L~~l~ 526 (631)
..|.-.|.-+... ....++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999988766432 23334666665
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.68 E-value=2.4 Score=37.32 Aligned_cols=97 Identities=12% Similarity=0.216 Sum_probs=54.3
Q ss_pred EEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc--ccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~--~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
|+.+.+.. .+...-...|.++++|+.+.+..+ +. .++..... .+|+.+.+.+ .+...-...|..+++|+.+++.
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 66777764 566444557888888999999875 66 66665444 5899999976 4331223456778999999997
Q ss_pred cCcCccccchhhhhccCCCCeEeecC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSG 529 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~ 529 (631)
.| +. .++...+... .++.+.+..
T Consensus 90 ~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 90 SN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT--B-EEHTTTTTT--T--EEE-TT
T ss_pred cc-cc-EEchhhhcCC-CceEEEECC
Confidence 76 54 5666555554 666676654
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=76.99 E-value=1.1 Score=27.12 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=12.4
Q ss_pred CCCCCEEEcccCcCccccchh
Q 006793 494 SSKLQLVLLNNNLLEGRVPEE 514 (631)
Q Consensus 494 l~~L~~L~ls~N~l~g~iP~~ 514 (631)
+++|++|+|++|+++..-...
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHH
Confidence 367888888888887544433
No 83
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=73.80 E-value=2 Score=39.24 Aligned_cols=22 Identities=14% Similarity=-0.123 Sum_probs=10.6
Q ss_pred CceEEehhhHHHHHHHHHHHHH
Q 006793 554 GGKIAIVILSLVLFSGVLLVVY 575 (631)
Q Consensus 554 ~~~i~~~i~~~~~~~~~~~~~~ 575 (631)
..+|++++++.+.+++.+++++
T Consensus 49 nIVIGvVVGVGg~ill~il~lv 70 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALV 70 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhh
Confidence 3456666665544444333333
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.03 E-value=2.4 Score=26.57 Aligned_cols=17 Identities=53% Similarity=0.855 Sum_probs=8.8
Q ss_pred cccccccccccCCCCCCc
Q 006793 472 SLVRLDLSDNQFTGSIPD 489 (631)
Q Consensus 472 ~L~~L~Ls~N~l~g~iP~ 489 (631)
+|+.|++++|+|+ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 3555555555555 4543
No 85
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=67.52 E-value=4 Score=36.14 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=10.5
Q ss_pred EehhhHHHHHHHHHHHHHHHHhhcCCC
Q 006793 558 AIVILSLVLFSGVLLVVYICCIRRGRN 584 (631)
Q Consensus 558 ~~~i~~~~~~~~~~~~~~~~~~~r~~~ 584 (631)
++++++++.++.++++++++++|++|+
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444443433344444444444444
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=66.93 E-value=3.6 Score=53.55 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=19.8
Q ss_pred ccccccCCCCCCc-cCCCCCCCCEEEcccCcCc
Q 006793 477 DLSDNQFTGSIPD-SLTSSSKLQLVLLNNNLLE 508 (631)
Q Consensus 477 ~Ls~N~l~g~iP~-~l~~l~~L~~L~ls~N~l~ 508 (631)
||++|+|+ .||. .|..|.+|+.|+|++|.|.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 56777777 3443 4556667777777777664
No 87
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=65.12 E-value=5 Score=27.92 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=8.8
Q ss_pred CCceEEehhhHHHHHHHHHH
Q 006793 553 KGGKIAIVILSLVLFSGVLL 572 (631)
Q Consensus 553 ~~~~i~~~i~~~~~~~~~~~ 572 (631)
....|++.+++.++++++++
T Consensus 9 ~~vaIa~~VvVPV~vI~~vl 28 (40)
T PF08693_consen 9 NTVAIAVGVVVPVGVIIIVL 28 (40)
T ss_pred ceEEEEEEEEechHHHHHHH
Confidence 34445544444444433333
No 88
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=62.44 E-value=8.4 Score=33.74 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=47.6
Q ss_pred hhcccccccccccccccCCCCCCCccc-c-ccccccccccccCCCCCCc-cCCCCCCCCEEEcccCcCccccchhhhhcc
Q 006793 443 KISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLLNNNLLEGRVPEELYSIG 519 (631)
Q Consensus 443 ~~~~l~~L~~L~Ls~N~l~g~iP~~~~-~-~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~ 519 (631)
.|.++++|+.+.+.. .+. .|+.... . .+|+.+++.++ +. .++. .|.++++|+.+.+.+ .+. .++...+...
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~ 80 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC 80 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccc-cccccccccc
Confidence 566778899998874 566 5665544 4 68999999886 65 3444 577777899999975 444 4555555544
Q ss_pred CCCCeEeecCC
Q 006793 520 VHGGAFDLSGN 530 (631)
Q Consensus 520 ~~L~~l~l~~N 530 (631)
.+++.+.+..|
T Consensus 81 ~~l~~i~~~~~ 91 (129)
T PF13306_consen 81 TNLKNIDIPSN 91 (129)
T ss_dssp TTECEEEETTT
T ss_pred ccccccccCcc
Confidence 57778887554
No 89
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=57.94 E-value=9.6 Score=26.11 Aligned_cols=9 Identities=44% Similarity=1.405 Sum_probs=4.3
Q ss_pred HHHHhhcCC
Q 006793 575 YICCIRRGR 583 (631)
Q Consensus 575 ~~~~~~r~~ 583 (631)
+.+++||.+
T Consensus 26 YaCcykk~~ 34 (38)
T PF02439_consen 26 YACCYKKHR 34 (38)
T ss_pred HHHHHcccc
Confidence 335555544
No 90
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=56.01 E-value=8.6 Score=38.79 Aligned_cols=26 Identities=31% Similarity=0.690 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCC
Q 006793 562 LSLVLFSGVLLVVYICCIRRGRNDYD 587 (631)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~r~~~~~~ 587 (631)
.+.++++++++++++|++|||++.|.
T Consensus 266 lvllil~vvliiLYiWlyrrRK~swk 291 (295)
T TIGR01478 266 LVLIILTVVLIILYIWLYRRRKKSWK 291 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Confidence 33444445555677777777776653
No 91
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=52.74 E-value=1.2 Score=45.29 Aligned_cols=60 Identities=25% Similarity=0.223 Sum_probs=30.0
Q ss_pred ccccccccccccCCCC-CCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCC
Q 006793 471 QSLVRLDLSDNQFTGS-IPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 471 ~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
+.||.||||+-.++-+ +-.-+..|++|+.|.|.+++|...|-..+.+.. .|+.+++++..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~-~L~~lnlsm~s 245 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS-NLVRLNLSMCS 245 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccc-cceeecccccc
Confidence 3455555555544321 111234455566666666666555555555443 45556655433
No 92
>PTZ00370 STEVOR; Provisional
Probab=52.68 E-value=9.9 Score=38.46 Aligned_cols=26 Identities=35% Similarity=0.706 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCC
Q 006793 562 LSLVLFSGVLLVVYICCIRRGRNDYD 587 (631)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~r~~~~~~ 587 (631)
.+.++++++++++++|++|||++.|.
T Consensus 262 lvllil~vvliilYiwlyrrRK~swk 287 (296)
T PTZ00370 262 LVLLILAVVLIILYIWLYRRRKNSWK 287 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 33344445555667777777776654
No 93
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=50.83 E-value=12 Score=23.43 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=11.6
Q ss_pred CCCCCEEEcccCcCc
Q 006793 494 SSKLQLVLLNNNLLE 508 (631)
Q Consensus 494 l~~L~~L~ls~N~l~ 508 (631)
+.+|+.|+|++|+++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 357888888888876
No 94
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=47.79 E-value=15 Score=31.20 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=9.5
Q ss_pred cCCceEEehhhHHHHHHHHH
Q 006793 552 SKGGKIAIVILSLVLFSGVL 571 (631)
Q Consensus 552 ~~~~~i~~~i~~~~~~~~~~ 571 (631)
+.+.+.++++++++++..++
T Consensus 64 s~gaiagi~vg~~~~v~~lv 83 (96)
T PTZ00382 64 STGAIAGISVAVVAVVGGLV 83 (96)
T ss_pred ccccEEEEEeehhhHHHHHH
Confidence 33445555665554443333
No 95
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=47.41 E-value=14 Score=23.43 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=10.4
Q ss_pred CCCCEEEcccCcCc
Q 006793 495 SKLQLVLLNNNLLE 508 (631)
Q Consensus 495 ~~L~~L~ls~N~l~ 508 (631)
++|+.|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888888775
No 96
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=44.58 E-value=15 Score=38.32 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=23.7
Q ss_pred CCeEeecCCCCCCCCCCCCCCCCcccCCCCcCCceEEehhhHHHHHHHHHHH-HHHHHhhc
Q 006793 522 GGAFDLSGNKGLCGAPSLPSCPLFWENGGLSKGGKIAIVILSLVLFSGVLLV-VYICCIRR 581 (631)
Q Consensus 522 L~~l~l~~N~~lc~~p~~~~c~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~-~~~~~~~r 581 (631)
++-+++.++.|-. ...|.. +.. ...++++|++++++++++++ .+++.|||
T Consensus 248 vQaF~~~~~~Fg~----a~~C~~-----D~~-~~~vPIaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 248 VQAFRVKNNTFGT----AEECSS-----DDT-SDLVPIAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred EEEEEecCCCCCC----hhcCCc-----CCc-cchHHHHHHHHHHHHHHHHHHhheeEecc
Confidence 4556666666421 236752 211 23456666665554444443 34433333
No 97
>PF15102 TMEM154: TMEM154 protein family
Probab=43.82 E-value=19 Score=32.69 Aligned_cols=7 Identities=29% Similarity=0.491 Sum_probs=2.8
Q ss_pred HhhcCCC
Q 006793 578 CIRRGRN 584 (631)
Q Consensus 578 ~~~r~~~ 584 (631)
++|||+.
T Consensus 81 ~~kRkr~ 87 (146)
T PF15102_consen 81 YYKRKRT 87 (146)
T ss_pred EEeeccc
Confidence 3344433
No 98
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=43.79 E-value=4.4e+02 Score=29.73 Aligned_cols=155 Identities=17% Similarity=0.244 Sum_probs=78.9
Q ss_pred eccceeeCCCCCCCCChHHHHHHHhcC-----CCceEEEEecCCCCceEEEEEeecccccccc-----CCceEEEEEECC
Q 006793 245 TTRERITNTNQPPNYYPMKLYQTAIVS-----SGAIQYNLAVDAKLDYLIWFHFAEIDSSVTK-----AGQRVFDILVND 314 (631)
Q Consensus 245 ~t~~~i~~~~~~~~~~P~~Vy~TA~~~-----~~~lt~~~~v~~~~~y~v~LhFaEi~~~~~~-----~~~R~F~V~in~ 314 (631)
+.+.+++.++..|-..-+++||+...- .+.+.+.|-...+.+|--.+..-|+...... .-..+-.|++||
T Consensus 33 ~~n~t~~~~g~vpg~i~s~l~~~gii~~~~~~~n~ln~kwia~d~wtysr~frl~dl~~~~~~~l~ie~vdtia~v~~n~ 112 (867)
T KOG2230|consen 33 SSNKTVNGTGTVPGDIYSDLYASGIIDNPLFGENHLNLKWIAEDDWTYSRKFRLIDLDDTVGAFLEIESVDTIATVYVNG 112 (867)
T ss_pred cCCCceecCCCCCchHhHHHHhcccccCccccccccceeEEeccCccceeeeEEEEccccccceEEEeecceeEEEEEcc
Confidence 445566666665555567788888765 2346666654445555433333443322110 113456889999
Q ss_pred eec-cccceeccCCCccceeeeeeEeecCCceEEEEEcccchhhhhhccccccccCCCCCCchhHH-------HHHHHHH
Q 006793 315 KNV-TRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQV-------IAMRALK 386 (631)
Q Consensus 315 ~~l-~~~di~~~~g~~~~~~~~~~~l~ls~n~L~~~l~~~~~~~~Ln~lEi~~l~~~~~~~~p~~~-------~~l~~l~ 386 (631)
+.+ ..-. -+.++..+++......|.+++.+.....-+-..+-|..+- .-....|+++ .-+.+.+
T Consensus 113 ~~v~~s~n------~f~~y~~~vt~ii~~~n~i~~~f~ssv~yA~~~~~~~~k~--svPPdC~p~iyhGECH~NfiRK~Q 184 (867)
T KOG2230|consen 113 QKVLHSRN------QFLPYHVNVTDIIAGENDITIKFKSSVKYAEKRADEYKKH--SLPPDCNPDIYHGECHQNFIRKAQ 184 (867)
T ss_pred EEEeeccc------cceeEEEeEEEEecCCcceEEEeehhHHHHHHHHHhhhcc--CCCCCCCchhhccchHHHHHHHhh
Confidence 853 2211 2344555555555667888888876654333333333331 0122233332 2233333
Q ss_pred HhcCCCCCCCCCCCCCCCCCCCCCccee
Q 006793 387 ESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (631)
Q Consensus 387 ~~~~~~~~~~w~gdpc~~~~~~~w~gv~ 414 (631)
.+ .+|+-.|..|+. .-|+.++
T Consensus 185 ~S------FsWDWGPsfPt~-GI~k~v~ 205 (867)
T KOG2230|consen 185 YS------FAWDWGPSFPTV-GIPSTIT 205 (867)
T ss_pred cc------eecccCCCCccC-CCCcceE
Confidence 22 267656776665 3566554
No 99
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.26 E-value=3.6 Score=39.65 Aligned_cols=79 Identities=22% Similarity=0.160 Sum_probs=46.0
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCC-CCCcccc--cccccccccccc-CCCCCCccCCCCCCCCEE
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT-LPSGLGQ--QSLVRLDLSDNQ-FTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~-iP~~~~~--~~L~~L~Ls~N~-l~g~iP~~l~~l~~L~~L 500 (631)
.++.+|.++..+...--+.+.+++.++.|.+.++.--+. --+.++. ++|+.|+|++|. ++..=-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 488899999998876666777888888888877642211 1111222 567777777653 332222233444555544
Q ss_pred Ecc
Q 006793 501 LLN 503 (631)
Q Consensus 501 ~ls 503 (631)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 443
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.74 E-value=14 Score=40.87 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=9.1
Q ss_pred eEEEEEEecCCCCc
Q 006793 424 VVISQIDLGSQGLK 437 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~ 437 (631)
+.+..++|++|+|.
T Consensus 218 p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY 231 (585)
T ss_pred cceeeeecccchhh
Confidence 44666777777764
No 101
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=36.08 E-value=3.3 Score=45.86 Aligned_cols=83 Identities=24% Similarity=0.230 Sum_probs=53.3
Q ss_pred EEEEEecCCCCcccC----chhhcccccccccccccccCCCCCCCccc-----c-ccccccccccccCCCC----CCccC
Q 006793 426 ISQIDLGSQGLKGYI----SDKISLLSNLVNLNLSTNSLGGTLPSGLG-----Q-QSLVRLDLSDNQFTGS----IPDSL 491 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~----p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~-----~-~~L~~L~Ls~N~l~g~----iP~~l 491 (631)
+..|.|.+|.+.... -..+..+..|+.|+|++|.+.+.--..+. . ..|+.|++..+.+++. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566778888877433 33455667888888888888733111111 1 4567778877777643 44455
Q ss_pred CCCCCCCEEEcccCcCc
Q 006793 492 TSSSKLQLVLLNNNLLE 508 (631)
Q Consensus 492 ~~l~~L~~L~ls~N~l~ 508 (631)
.....|+.+|++.|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLI 185 (478)
T ss_pred hcccchhHHHHHhcccc
Confidence 55677788888888773
No 102
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.28 E-value=19 Score=39.85 Aligned_cols=62 Identities=31% Similarity=0.369 Sum_probs=39.9
Q ss_pred ccccccccccccccCCCCCCC--cccc--ccccccccccc--cCCCCCCccCCCC--CCCCEEEcccCcCccc
Q 006793 446 LLSNLVNLNLSTNSLGGTLPS--GLGQ--QSLVRLDLSDN--QFTGSIPDSLTSS--SKLQLVLLNNNLLEGR 510 (631)
Q Consensus 446 ~l~~L~~L~Ls~N~l~g~iP~--~~~~--~~L~~L~Ls~N--~l~g~iP~~l~~l--~~L~~L~ls~N~l~g~ 510 (631)
+.+.+..+.|++|+|. .+-. .+.. ++|+.|+||+| .+. .-.++..+ ..|+.|.+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 3456777888999887 4332 2333 88999999998 333 11223322 4578888999988643
No 103
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=33.31 E-value=14 Score=37.88 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCC
Q 006793 574 VYICCIRRGRND 585 (631)
Q Consensus 574 ~~~~~~~r~~~~ 585 (631)
+++|++|||+.+
T Consensus 166 a~icyrrkR~GK 177 (290)
T PF05454_consen 166 ACICYRRKRKGK 177 (290)
T ss_dssp ------------
T ss_pred HHHhhhhhhccc
Confidence 334444444333
No 104
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=33.11 E-value=18 Score=29.11 Aligned_cols=9 Identities=44% Similarity=0.944 Sum_probs=2.9
Q ss_pred HHHHhhcCC
Q 006793 575 YICCIRRGR 583 (631)
Q Consensus 575 ~~~~~~r~~ 583 (631)
+++++||++
T Consensus 20 ~~~~~rr~~ 28 (75)
T PF14575_consen 20 VIVCFRRCK 28 (75)
T ss_dssp HHCCCTT--
T ss_pred EEEEEeeEc
Confidence 334444443
No 105
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=32.07 E-value=22 Score=36.70 Aligned_cols=13 Identities=8% Similarity=0.388 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHh
Q 006793 567 FSGVLLVVYICCI 579 (631)
Q Consensus 567 ~~~~~~~~~~~~~ 579 (631)
.+++++++++++|
T Consensus 268 IVLIMvIIYLILR 280 (299)
T PF02009_consen 268 IVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 106
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=30.81 E-value=30 Score=30.55 Aligned_cols=7 Identities=43% Similarity=1.032 Sum_probs=2.5
Q ss_pred CCCCCCC
Q 006793 537 PSLPSCP 543 (631)
Q Consensus 537 p~~~~c~ 543 (631)
|..+.|.
T Consensus 59 P~S~~C~ 65 (129)
T PF12191_consen 59 PKSPFCQ 65 (129)
T ss_dssp TT-CCCC
T ss_pred CCCcccc
Confidence 4334444
No 107
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=29.00 E-value=63 Score=24.49 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=14.2
Q ss_pred CcccCchHHHHHHHHHHhhhhhcccCCCC
Q 006793 1 MSLLSPSSFFFLSLLLVLPLSLASSYPYK 29 (631)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (631)
||.++.++.++ ++.++.-.+.|.+|.++
T Consensus 1 MA~Kl~vialL-C~aLva~vQ~APQYa~G 28 (65)
T PF10731_consen 1 MASKLIVIALL-CVALVAIVQSAPQYAPG 28 (65)
T ss_pred CcchhhHHHHH-HHHHHHHHhcCcccCCC
Confidence 78777443333 33333344566666543
No 108
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=28.52 E-value=18 Score=39.53 Aligned_cols=84 Identities=20% Similarity=0.133 Sum_probs=42.0
Q ss_pred eEEEEEEecCC-CCcccC----chhhccccccccccccccc-CCCCCCCcccc--cccccccccccc-CCCC-CCccCCC
Q 006793 424 VVISQIDLGSQ-GLKGYI----SDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ--QSLVRLDLSDNQ-FTGS-IPDSLTS 493 (631)
Q Consensus 424 ~~l~~L~Ls~n-~l~g~~----p~~~~~l~~L~~L~Ls~N~-l~g~iP~~~~~--~~L~~L~Ls~N~-l~g~-iP~~l~~ 493 (631)
+.|+.|+++++ ...... ......+.+|+.|+++... ++...=..+.. ++|+.|.+.++. ++.. +-.-...
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 45777777762 111111 1234445677777777766 33222122222 567777755554 3321 1111233
Q ss_pred CCCCCEEEcccCcC
Q 006793 494 SSKLQLVLLNNNLL 507 (631)
Q Consensus 494 l~~L~~L~ls~N~l 507 (631)
++.|++|+++.+..
T Consensus 294 ~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 294 CPSLRELDLSGCHG 307 (482)
T ss_pred cCcccEEeeecCcc
Confidence 56677777776544
No 109
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=27.25 E-value=63 Score=26.59 Aligned_cols=7 Identities=57% Similarity=1.516 Sum_probs=3.0
Q ss_pred HHhhcCC
Q 006793 577 CCIRRGR 583 (631)
Q Consensus 577 ~~~~r~~ 583 (631)
||.+|++
T Consensus 54 CC~kRkr 60 (94)
T PF05393_consen 54 CCKKRKR 60 (94)
T ss_pred HHHHhhh
Confidence 4444444
No 110
>PTZ00046 rifin; Provisional
Probab=25.98 E-value=41 Score=35.47 Aligned_cols=25 Identities=16% Similarity=0.438 Sum_probs=10.9
Q ss_pred ehhhHHHHHHHHHHHHHHHHhhcCC
Q 006793 559 IVILSLVLFSGVLLVVYICCIRRGR 583 (631)
Q Consensus 559 ~~i~~~~~~~~~~~~~~~~~~~r~~ 583 (631)
..+++.++.+++++++++.+|.||+
T Consensus 319 aSiiAIvVIVLIMvIIYLILRYRRK 343 (358)
T PTZ00046 319 ASIVAIVVIVLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3333334444444555554443333
No 111
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=24.24 E-value=46 Score=35.01 Aligned_cols=23 Identities=13% Similarity=0.454 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcC
Q 006793 560 VILSLVLFSGVLLVVYICCIRRG 582 (631)
Q Consensus 560 ~i~~~~~~~~~~~~~~~~~~~r~ 582 (631)
.+++.++.+++++++++.+|.||
T Consensus 315 SiIAIvvIVLIMvIIYLILRYRR 337 (353)
T TIGR01477 315 SIIAILIIVLIMVIIYLILRYRR 337 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333334444445554444333
No 112
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.79 E-value=1.1e+02 Score=24.69 Aligned_cols=21 Identities=10% Similarity=-0.189 Sum_probs=10.6
Q ss_pred cCCCCCCCCCchhhhhHHHHh
Q 006793 581 RGRNDYDFGLPQDLMSLSAKR 601 (631)
Q Consensus 581 r~~~~~~~~~~~~l~~~~~~~ 601 (631)
.+++...+...++...+..+.
T Consensus 28 sk~~~~~gLs~~d~~~L~~L~ 48 (75)
T PF06667_consen 28 SKWKSSQGLSEEDEQRLQELY 48 (75)
T ss_pred HhcccCCCCCHHHHHHHHHHH
Confidence 334445555555555555443
No 113
>PRK06764 hypothetical protein; Provisional
Probab=22.64 E-value=76 Score=25.84 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=16.3
Q ss_pred CceEEeecCCCcceEEEEE
Q 006793 89 KNCYIIPNLPPGRYYIRTF 107 (631)
Q Consensus 89 ~~cY~~pv~~~g~ylvRl~ 107 (631)
-|-|++.-.++|+|.||..
T Consensus 73 lnkyti~f~kpg~yvirvn 91 (105)
T PRK06764 73 LNKYTIRFSKPGKYVIRVN 91 (105)
T ss_pred eeeeEEEecCCccEEEEEc
Confidence 4689998889999999973
No 114
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=21.71 E-value=87 Score=30.47 Aligned_cols=8 Identities=13% Similarity=0.376 Sum_probs=3.3
Q ss_pred CCCCCchh
Q 006793 586 YDFGLPQD 593 (631)
Q Consensus 586 ~~~~~~~~ 593 (631)
.++-.|++
T Consensus 80 ~e~~tPn~ 87 (221)
T PF08374_consen 80 SEWVTPNQ 87 (221)
T ss_pred ccccCCCc
Confidence 33444443
No 115
>PHA03265 envelope glycoprotein D; Provisional
Probab=21.43 E-value=50 Score=34.38 Aligned_cols=10 Identities=20% Similarity=0.733 Sum_probs=5.7
Q ss_pred EEccCCCCCc
Q 006793 33 RIDCGSATST 42 (631)
Q Consensus 33 ~IdCG~~~~~ 42 (631)
-+.||.-+++
T Consensus 24 ~~~~~~~~~~ 33 (402)
T PHA03265 24 VLSCGTCEKA 33 (402)
T ss_pred HHhcccHHHH
Confidence 4667765443
No 116
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=20.83 E-value=35 Score=26.42 Aligned_cols=6 Identities=17% Similarity=0.097 Sum_probs=0.4
Q ss_pred HhhcCC
Q 006793 578 CIRRGR 583 (631)
Q Consensus 578 ~~~r~~ 583 (631)
+|.|++
T Consensus 34 yR~rkk 39 (64)
T PF01034_consen 34 YRMRKK 39 (64)
T ss_dssp ---S--
T ss_pred HHHHhc
Confidence 333433
No 117
>PF15050 SCIMP: SCIMP protein
Probab=20.18 E-value=1e+02 Score=26.90 Aligned_cols=10 Identities=10% Similarity=0.341 Sum_probs=3.8
Q ss_pred cCCCCCCCCC
Q 006793 581 RGRNDYDFGL 590 (631)
Q Consensus 581 r~~~~~~~~~ 590 (631)
|+.+++.-..
T Consensus 36 RqGkkweiak 45 (133)
T PF15050_consen 36 RQGKKWEIAK 45 (133)
T ss_pred Hccccceecc
Confidence 3333444333
Done!