Query 006793
Match_columns 631
No_of_seqs 442 out of 3747
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 09:07:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwp_A Malectin, MGC80075; sug 99.9 2.7E-23 9.2E-28 196.7 12.0 148 30-183 6-172 (174)
2 2jwp_A Malectin, MGC80075; sug 99.8 4.3E-21 1.5E-25 181.5 7.7 152 199-366 5-170 (174)
3 1ogq_A PGIP-2, polygalacturona 99.7 2.8E-17 9.6E-22 170.5 11.9 154 373-533 2-162 (313)
4 4ecn_A Leucine-rich repeat pro 99.7 3E-17 1E-21 191.6 9.7 145 374-531 266-526 (876)
5 4eco_A Uncharacterized protein 99.7 4.3E-17 1.5E-21 185.5 9.1 146 374-531 27-284 (636)
6 3rgz_A Protein brassinosteroid 99.6 8.5E-17 2.9E-21 187.1 4.1 122 421-545 629-751 (768)
7 3rgz_A Protein brassinosteroid 99.6 2.2E-16 7.6E-21 183.6 4.6 114 423-537 441-555 (768)
8 1w8a_A SLIT protein; signaling 99.6 1.4E-15 4.9E-20 146.0 8.4 133 402-535 2-141 (192)
9 2wfh_A SLIT homolog 2 protein 99.5 9.1E-15 3.1E-19 140.6 9.3 134 400-535 2-141 (193)
10 1ogq_A PGIP-2, polygalacturona 99.5 4.2E-16 1.4E-20 161.6 -0.6 184 335-542 126-312 (313)
11 4fcg_A Uncharacterized protein 99.5 3E-15 1E-19 156.3 5.3 190 334-537 104-294 (328)
12 4fcg_A Uncharacterized protein 99.5 3.1E-15 1.1E-19 156.1 5.3 140 372-515 22-170 (328)
13 2o6r_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 134.3 9.5 128 407-535 6-139 (177)
14 2v70_A SLIT-2, SLIT homolog 2 99.5 1.8E-14 6.2E-19 141.4 7.6 133 401-534 4-143 (220)
15 3e6j_A Variable lymphocyte rec 99.4 2.3E-13 7.9E-18 134.3 10.0 124 408-534 19-149 (229)
16 4eco_A Uncharacterized protein 99.4 2.3E-14 7.8E-19 163.1 3.1 112 420-533 202-343 (636)
17 1p9a_G Platelet glycoprotein I 99.4 6.2E-14 2.1E-18 143.6 5.9 178 335-535 32-210 (290)
18 2v9t_B SLIT homolog 2 protein 99.4 1.9E-13 6.7E-18 134.0 8.8 133 401-534 4-142 (220)
19 4ecn_A Leucine-rich repeat pro 99.4 6.5E-15 2.2E-19 171.9 -3.0 108 422-533 489-608 (876)
20 3m19_A Variable lymphocyte rec 99.4 2.6E-13 8.8E-18 135.8 8.6 109 425-534 36-145 (251)
21 2xot_A Amphoterin-induced prot 99.4 1.2E-13 4.2E-18 145.9 6.0 135 398-533 8-149 (361)
22 2o6s_A Variable lymphocyte rec 99.4 5.1E-13 1.8E-17 129.5 9.5 126 407-533 6-137 (208)
23 2o6q_A Variable lymphocyte rec 99.4 3.3E-13 1.1E-17 136.5 8.0 134 396-533 6-146 (270)
24 3m19_A Variable lymphocyte rec 99.4 5.8E-13 2E-17 133.2 9.4 111 424-535 83-194 (251)
25 2v9t_B SLIT homolog 2 protein 99.4 4E-13 1.4E-17 131.8 7.9 111 423-535 55-167 (220)
26 1ozn_A Reticulon 4 receptor; N 99.4 2.1E-13 7.3E-18 138.9 5.6 181 335-535 57-240 (285)
27 2o6q_A Variable lymphocyte rec 99.4 4E-13 1.4E-17 135.9 5.6 112 423-535 108-220 (270)
28 2z66_A Variable lymphocyte rec 99.3 2E-13 7E-18 140.4 3.0 113 423-535 149-263 (306)
29 3v47_A TOLL-like receptor 5B a 99.3 6.4E-13 2.2E-17 144.3 6.8 134 400-534 2-143 (455)
30 3e6j_A Variable lymphocyte rec 99.3 1.4E-12 4.7E-17 128.7 8.3 110 424-535 64-174 (229)
31 1p9a_G Platelet glycoprotein I 99.3 8.4E-13 2.9E-17 135.2 6.8 107 424-534 31-138 (290)
32 1ozn_A Reticulon 4 receptor; N 99.3 1.2E-12 4.2E-17 133.2 7.9 109 424-533 32-142 (285)
33 3g39_A Variable lymphocyte rec 99.3 2.6E-12 8.7E-17 120.7 8.5 105 427-535 12-117 (170)
34 2ell_A Acidic leucine-rich nuc 99.3 8.7E-13 3E-17 123.3 5.1 105 425-532 25-132 (168)
35 3vq2_A TLR4, TOLL-like recepto 99.3 5.6E-13 1.9E-17 150.3 4.2 114 422-536 446-561 (606)
36 3rfs_A Internalin B, repeat mo 99.3 3.1E-12 1.1E-16 129.5 9.2 113 424-537 109-222 (272)
37 2o6s_A Variable lymphocyte rec 99.3 3.6E-12 1.2E-16 123.5 9.0 112 424-536 52-164 (208)
38 3zyi_A Leucine-rich repeat-con 99.3 2.5E-12 8.4E-17 140.0 8.7 124 410-534 56-185 (452)
39 3t6q_A CD180 antigen; protein- 99.3 1.1E-12 3.6E-17 148.1 5.5 123 411-534 363-490 (606)
40 2z62_A TOLL-like receptor 4, v 99.3 1.1E-12 3.7E-17 133.0 4.4 109 425-534 29-138 (276)
41 2r9u_A Variable lymphocyte rec 99.3 5.1E-12 1.7E-16 119.2 8.8 104 427-535 15-120 (174)
42 2z7x_B TOLL-like receptor 1, v 99.3 3.3E-13 1.1E-17 149.4 0.1 174 335-533 248-434 (520)
43 1wwl_A Monocyte differentiatio 99.3 1.5E-12 5.1E-17 134.6 4.8 109 423-532 120-240 (312)
44 4g8a_A TOLL-like receptor 4; l 99.3 1.1E-12 3.8E-17 148.0 3.8 109 425-534 53-162 (635)
45 2id5_A Lingo-1, leucine rich r 99.3 3E-12 1E-16 140.2 6.9 125 409-534 12-142 (477)
46 1xku_A Decorin; proteoglycan, 99.3 6E-12 2E-16 130.9 8.9 129 401-533 24-158 (330)
47 1wwl_A Monocyte differentiatio 99.3 1.2E-12 4E-17 135.4 3.2 106 425-532 96-213 (312)
48 4g8a_A TOLL-like receptor 4; l 99.3 2.6E-12 8.8E-17 145.0 6.0 113 423-535 468-582 (635)
49 2z66_A Variable lymphocyte rec 99.3 1.1E-12 3.9E-17 134.8 2.7 113 423-536 125-239 (306)
50 3zyj_A Leucine-rich repeat-con 99.3 4.7E-12 1.6E-16 137.3 7.6 134 400-534 33-174 (440)
51 2ft3_A Biglycan; proteoglycan, 99.2 3.7E-12 1.3E-16 132.7 6.0 129 401-533 26-160 (332)
52 3zyi_A Leucine-rich repeat-con 99.2 8.2E-12 2.8E-16 135.9 8.5 185 423-627 98-285 (452)
53 1xku_A Decorin; proteoglycan, 99.2 3.3E-12 1.1E-16 132.9 5.1 103 426-531 147-251 (330)
54 3zyj_A Leucine-rich repeat-con 99.2 9.9E-12 3.4E-16 134.7 9.1 186 422-627 86-274 (440)
55 3g39_A Variable lymphocyte rec 99.2 9E-12 3.1E-16 117.0 7.6 111 402-512 3-119 (170)
56 3v47_A TOLL-like receptor 5B a 99.2 6.4E-12 2.2E-16 136.5 7.2 115 422-537 297-412 (455)
57 2z63_A TOLL-like receptor 4, v 99.2 1.3E-12 4.4E-17 146.0 1.5 113 423-536 420-534 (570)
58 1ziw_A TOLL-like receptor 3; i 99.2 8.9E-12 3E-16 142.5 8.3 126 408-535 4-136 (680)
59 2ifg_A High affinity nerve gro 99.2 1.1E-11 3.6E-16 129.9 8.2 92 440-534 24-117 (347)
60 2id5_A Lingo-1, leucine rich r 99.2 7.7E-13 2.6E-17 144.9 -0.6 110 424-534 104-214 (477)
61 4b8c_D Glucose-repressible alc 99.2 1.9E-11 6.5E-16 140.8 10.7 107 422-533 222-329 (727)
62 3t6q_A CD180 antigen; protein- 99.2 8.2E-12 2.8E-16 140.8 7.5 124 410-534 14-143 (606)
63 3vq2_A TLR4, TOLL-like recepto 99.2 5.8E-12 2E-16 142.0 6.1 110 424-534 32-142 (606)
64 2z62_A TOLL-like receptor 4, v 99.2 3.8E-12 1.3E-16 128.9 3.6 112 423-536 123-240 (276)
65 2v70_A SLIT-2, SLIT homolog 2 99.2 1.6E-11 5.6E-16 120.2 7.8 113 422-535 55-168 (220)
66 2je0_A Acidic leucine-rich nuc 99.2 6.3E-12 2.2E-16 114.9 4.4 105 425-532 18-125 (149)
67 2z80_A TOLL-like receptor 2, v 99.2 4.1E-12 1.4E-16 133.5 3.3 113 421-535 171-316 (353)
68 1w8a_A SLIT protein; signaling 99.2 1.2E-11 4.1E-16 118.4 6.2 113 423-537 53-166 (192)
69 2z80_A TOLL-like receptor 2, v 99.2 4.3E-12 1.5E-16 133.4 3.2 124 408-534 30-163 (353)
70 2ft3_A Biglycan; proteoglycan, 99.2 2E-11 7E-16 127.0 8.0 106 423-532 77-184 (332)
71 4ezg_A Putative uncharacterize 99.2 9.8E-12 3.3E-16 119.5 4.7 107 423-534 43-150 (197)
72 4ay9_X Follicle-stimulating ho 99.2 2.8E-12 9.7E-17 134.8 0.6 127 407-534 8-142 (350)
73 2r9u_A Variable lymphocyte rec 99.2 5.4E-11 1.9E-15 112.1 9.0 109 401-510 5-120 (174)
74 1dce_A Protein (RAB geranylger 99.2 2.6E-11 8.9E-16 135.6 7.9 103 426-534 443-547 (567)
75 2z7x_B TOLL-like receptor 1, v 99.2 1.4E-11 4.7E-16 136.3 5.4 109 424-535 374-483 (520)
76 4glp_A Monocyte differentiatio 99.2 1.9E-11 6.6E-16 126.0 5.9 110 423-533 116-237 (310)
77 3rfs_A Internalin B, repeat mo 99.2 5.3E-11 1.8E-15 120.3 9.0 110 424-534 85-195 (272)
78 3j0a_A TOLL-like receptor 5; m 99.1 2.5E-11 8.6E-16 142.5 6.7 110 424-534 24-137 (844)
79 2xwt_C Thyrotropin receptor; s 99.1 9.2E-12 3.1E-16 123.3 2.4 106 425-534 32-144 (239)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1.8E-11 6E-16 137.0 5.0 109 423-535 402-512 (562)
81 2z81_A CD282 antigen, TOLL-lik 99.1 2.1E-11 7.3E-16 135.6 5.2 107 425-532 27-135 (549)
82 2xwt_C Thyrotropin receptor; s 99.1 1.3E-11 4.5E-16 122.2 3.0 107 424-533 55-169 (239)
83 3j0a_A TOLL-like receptor 5; m 99.1 1.5E-11 5E-16 144.5 3.7 107 424-536 451-563 (844)
84 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1.4E-11 4.8E-16 137.8 3.4 108 423-533 352-463 (562)
85 2xot_A Amphoterin-induced prot 99.1 4.5E-11 1.5E-15 126.2 7.1 109 423-534 87-203 (361)
86 1ziw_A TOLL-like receptor 3; i 99.1 4.5E-11 1.5E-15 136.7 6.7 113 422-535 502-624 (680)
87 3oja_B Anopheles plasmodium-re 99.1 8.1E-11 2.8E-15 132.7 8.7 111 423-534 50-161 (597)
88 3oja_A Leucine-rich immune mol 99.1 4.7E-11 1.6E-15 131.3 6.5 109 423-535 143-252 (487)
89 2ell_A Acidic leucine-rich nuc 99.1 5.1E-11 1.8E-15 111.1 5.7 107 422-532 47-159 (168)
90 2je0_A Acidic leucine-rich nuc 99.1 2.4E-11 8.2E-16 111.0 3.2 105 422-529 40-149 (149)
91 4glp_A Monocyte differentiatio 99.1 4.1E-11 1.4E-15 123.6 4.6 110 423-533 144-264 (310)
92 4ezg_A Putative uncharacterize 99.1 4.3E-11 1.5E-15 115.0 4.3 103 425-531 89-192 (197)
93 2wfh_A SLIT homolog 2 protein 99.1 2.3E-10 7.9E-15 109.6 8.9 103 427-534 13-116 (193)
94 1h6u_A Internalin H; cell adhe 99.1 3.2E-11 1.1E-15 124.5 2.6 22 604-625 213-234 (308)
95 3cvr_A Invasion plasmid antige 99.1 3.9E-11 1.3E-15 133.9 3.4 101 409-531 49-151 (571)
96 3o6n_A APL1; leucine-rich repe 99.1 5.8E-11 2E-15 126.4 4.6 111 423-534 44-155 (390)
97 4b8c_D Glucose-repressible alc 99.1 2.3E-11 7.8E-16 140.2 1.0 110 423-535 246-356 (727)
98 1h6u_A Internalin H; cell adhe 99.0 1.5E-10 5E-15 119.4 5.9 102 423-533 62-164 (308)
99 1m9s_A Internalin B; cell inva 99.0 2.2E-10 7.7E-15 128.9 6.7 154 422-628 63-217 (605)
100 1dce_A Protein (RAB geranylger 99.0 3.2E-10 1.1E-14 126.8 7.5 105 420-527 459-567 (567)
101 1jl5_A Outer protein YOPM; leu 99.0 6.3E-11 2.1E-15 129.1 1.6 92 426-531 93-184 (454)
102 3oja_A Leucine-rich immune mol 99.0 1.5E-10 5E-15 127.3 4.4 116 409-533 110-227 (487)
103 1h6t_A Internalin B; cell adhe 99.0 2.1E-10 7.3E-15 117.2 5.0 102 423-533 67-169 (291)
104 1a9n_A U2A', U2A'; complex (nu 99.0 1.7E-10 5.7E-15 108.7 3.7 79 426-508 44-126 (176)
105 3oja_B Anopheles plasmodium-re 99.0 5.2E-10 1.8E-14 126.1 8.4 107 421-532 96-204 (597)
106 1xeu_A Internalin C; cellular 99.0 2.6E-10 8.8E-15 114.9 5.1 98 425-532 42-140 (263)
107 3o53_A Protein LRIM1, AGAP0063 99.0 2.4E-10 8E-15 118.3 4.6 107 424-534 144-251 (317)
108 3o53_A Protein LRIM1, AGAP0063 99.0 2.7E-10 9.1E-15 117.9 4.6 106 424-533 120-227 (317)
109 1a9n_A U2A', U2A'; complex (nu 99.0 3.5E-10 1.2E-14 106.4 4.7 102 425-533 20-126 (176)
110 3o6n_A APL1; leucine-rich repe 98.9 8.9E-10 3E-14 117.2 8.1 107 421-532 90-198 (390)
111 3cvr_A Invasion plasmid antige 98.9 2.1E-10 7.2E-15 128.0 3.4 147 334-518 100-253 (571)
112 2ifg_A High affinity nerve gro 98.9 5.9E-10 2E-14 116.6 6.2 129 407-537 7-145 (347)
113 3bz5_A Internalin-J, INLJ; leu 98.9 5.5E-10 1.9E-14 121.7 6.0 80 423-511 169-249 (457)
114 1h6t_A Internalin B; cell adhe 98.9 2.5E-10 8.4E-15 116.8 3.0 102 424-534 112-214 (291)
115 2z81_A CD282 antigen, TOLL-lik 98.9 4E-10 1.4E-14 125.3 4.7 109 422-531 72-183 (549)
116 2z63_A TOLL-like receptor 4, v 98.9 1.4E-09 4.6E-14 121.4 8.8 111 422-533 74-190 (570)
117 2o6r_A Variable lymphocyte rec 98.9 3.2E-09 1.1E-13 99.8 9.4 104 426-533 9-113 (177)
118 1m9s_A Internalin B; cell inva 98.9 4.8E-10 1.6E-14 126.2 3.7 101 424-533 109-210 (605)
119 3bz5_A Internalin-J, INLJ; leu 98.9 1.5E-09 5.1E-14 118.3 7.4 95 424-531 64-159 (457)
120 1jl5_A Outer protein YOPM; leu 98.9 4.2E-10 1.4E-14 122.5 2.6 100 424-533 11-124 (454)
121 1xeu_A Internalin C; cellular 98.8 4.6E-09 1.6E-13 105.6 8.1 103 423-534 62-164 (263)
122 1o6v_A Internalin A; bacterial 98.8 1.6E-09 5.5E-14 118.2 4.3 101 424-533 243-344 (466)
123 2ca6_A RAN GTPase-activating p 98.8 5.1E-10 1.7E-14 118.9 -1.0 110 424-533 32-172 (386)
124 3g06_A SSPH2 (leucine-rich rep 98.8 3.9E-09 1.3E-13 119.1 5.5 95 426-534 203-298 (622)
125 1ds9_A Outer arm dynein; leuci 98.7 1.9E-10 6.4E-15 110.5 -5.0 105 424-534 48-154 (198)
126 1ds9_A Outer arm dynein; leuci 98.7 2E-10 6.9E-15 110.3 -5.1 101 427-533 21-128 (198)
127 3goz_A Leucine-rich repeat-con 98.7 1.6E-09 5.5E-14 114.2 1.1 107 426-532 24-150 (362)
128 4fmz_A Internalin; leucine ric 98.7 5.8E-09 2E-13 108.8 4.8 103 425-534 222-325 (347)
129 4fmz_A Internalin; leucine ric 98.7 2.2E-08 7.4E-13 104.4 7.0 103 423-532 242-345 (347)
130 1o6v_A Internalin A; bacterial 98.6 1.9E-08 6.3E-13 109.7 5.5 103 423-534 286-389 (466)
131 2ca6_A RAN GTPase-activating p 98.6 3.6E-09 1.2E-13 112.3 -0.2 110 425-534 188-317 (386)
132 3g06_A SSPH2 (leucine-rich rep 98.6 3.7E-08 1.3E-12 111.1 7.9 92 425-533 62-154 (622)
133 2ast_B S-phase kinase-associat 98.6 3.3E-09 1.1E-13 110.1 -2.3 107 424-531 118-233 (336)
134 2ast_B S-phase kinase-associat 98.5 6.9E-09 2.4E-13 107.6 -2.2 108 423-531 141-258 (336)
135 3goz_A Leucine-rich repeat-con 98.4 4.1E-08 1.4E-12 103.3 1.2 106 428-533 2-122 (362)
136 3rw6_A Nuclear RNA export fact 98.2 2.3E-07 7.9E-12 93.0 2.0 96 429-526 148-257 (267)
137 1z7x_W Ribonuclease inhibitor; 98.2 5.9E-08 2E-12 105.1 -3.3 110 424-533 256-383 (461)
138 3un9_A NLR family member X1; l 98.1 1.9E-07 6.6E-12 98.6 -1.3 106 425-531 102-222 (372)
139 1z7x_W Ribonuclease inhibitor; 98.1 1.4E-07 4.9E-12 102.1 -2.9 108 424-532 56-182 (461)
140 4ay9_X Follicle-stimulating ho 98.0 1.9E-06 6.5E-11 90.0 3.2 108 425-537 129-240 (350)
141 3un9_A NLR family member X1; l 98.0 6.7E-07 2.3E-11 94.5 -1.0 108 425-533 127-252 (372)
142 3rw6_A Nuclear RNA export fact 97.9 1.7E-06 5.9E-11 86.6 0.8 76 424-501 170-257 (267)
143 3sb4_A Hypothetical leucine ri 97.8 3.4E-06 1.2E-10 87.2 1.2 26 601-626 290-315 (329)
144 3ogk_B Coronatine-insensitive 97.8 1.8E-06 6.3E-11 96.4 -1.2 110 424-533 403-526 (592)
145 1io0_A Tropomodulin; LRR prote 97.7 3.7E-06 1.3E-10 79.5 -0.4 107 425-531 37-162 (185)
146 3sb4_A Hypothetical leucine ri 97.5 7.3E-05 2.5E-09 77.1 4.8 98 425-526 227-327 (329)
147 2p1m_B Transport inhibitor res 97.4 8.7E-06 3E-10 90.9 -3.8 104 426-531 374-492 (594)
148 2p1m_B Transport inhibitor res 97.2 3.7E-05 1.3E-09 85.8 -0.6 33 426-458 107-140 (594)
149 3ogk_B Coronatine-insensitive 97.2 0.00015 5.1E-09 80.8 4.1 57 471-528 270-326 (592)
150 3rfe_A Platelet glycoprotein I 97.0 0.00071 2.4E-08 59.8 5.8 57 475-534 12-69 (130)
151 1io0_A Tropomodulin; LRR prote 96.9 5.8E-05 2E-09 71.2 -3.2 84 425-508 66-164 (185)
152 2ra8_A Uncharacterized protein 96.7 0.00019 6.6E-09 75.1 -1.2 106 425-531 194-318 (362)
153 4fdw_A Leucine rich hypothetic 96.5 0.0019 6.5E-08 68.6 5.4 25 601-626 339-363 (401)
154 3e4g_A ATP synthase subunit S, 95.8 0.0012 4.2E-08 61.4 -0.7 83 424-506 61-150 (176)
155 2ra8_A Uncharacterized protein 95.7 0.0034 1.2E-07 65.6 2.3 106 424-532 172-291 (362)
156 3rfe_A Platelet glycoprotein I 95.7 0.0098 3.4E-07 52.3 4.9 37 471-508 31-68 (130)
157 1pgv_A TMD-1, tropomodulin TMD 94.9 0.0053 1.8E-07 58.1 0.4 103 426-529 43-166 (197)
158 4fdw_A Leucine rich hypothetic 94.6 0.024 8.2E-07 60.0 4.7 102 426-532 250-357 (401)
159 3e4g_A ATP synthase subunit S, 93.1 0.016 5.5E-07 53.7 -0.1 85 448-533 61-152 (176)
160 1pgv_A TMD-1, tropomodulin TMD 89.5 0.045 1.5E-06 51.7 -1.2 89 443-531 36-137 (197)
161 2w47_A Lipolytic enzyme, G-D-S 88.0 11 0.00038 33.0 13.7 93 87-183 39-132 (144)
162 4gt6_A Cell surface protein; l 88.0 0.83 2.8E-05 47.6 7.3 100 426-531 267-368 (394)
163 4h09_A Hypothetical leucine ri 85.4 0.8 2.7E-05 47.3 5.4 99 426-529 242-342 (379)
164 2vzp_A Aocbm35, EXO-beta-D-glu 82.5 20 0.00068 30.4 12.4 90 86-179 37-127 (127)
165 2w3j_A Carbohydrate binding mo 80.8 23 0.00077 31.1 12.3 92 87-183 38-130 (145)
166 2ks1_B Epidermal growth factor 79.8 2.2 7.7E-05 29.4 4.0 8 575-582 32-39 (44)
167 4fs7_A Uncharacterized protein 77.1 1.6 5.6E-05 45.3 4.1 79 444-528 293-374 (394)
168 4fs7_A Uncharacterized protein 75.6 2.2 7.5E-05 44.3 4.6 77 425-505 298-376 (394)
169 4gt6_A Cell surface protein; l 75.2 1.8 6.2E-05 45.0 3.8 77 426-507 290-369 (394)
170 2wz8_A Cellulosome protein doc 73.4 19 0.00065 32.1 9.6 88 90-182 49-149 (156)
171 2l2t_A Receptor tyrosine-prote 72.4 3.4 0.00012 28.5 3.2 8 575-582 31-38 (44)
172 4h09_A Hypothetical leucine ri 69.1 5.8 0.0002 40.6 6.0 86 440-530 232-320 (379)
173 2w87_A Esterase D, XYL-CBM35; 68.3 37 0.0012 29.4 10.2 91 87-181 38-130 (139)
174 2w3j_A Carbohydrate binding mo 65.4 21 0.00071 31.3 8.0 88 272-365 38-127 (145)
175 2vzp_A Aocbm35, EXO-beta-D-glu 64.6 26 0.00088 29.7 8.3 41 272-317 38-78 (127)
176 2w47_A Lipolytic enzyme, G-D-S 63.3 26 0.00088 30.5 8.2 89 272-366 39-130 (144)
177 2o14_A Hypothetical protein YX 61.9 57 0.0019 33.4 11.9 79 90-184 78-157 (375)
178 2jwa_A Receptor tyrosine-prote 59.9 5.9 0.0002 27.2 2.5 9 575-583 32-40 (44)
179 2k1k_A Ephrin type-A receptor 56.7 3.5 0.00012 27.5 0.9 19 559-577 16-34 (38)
180 2wz8_A Cellulosome protein doc 54.1 54 0.0018 29.1 8.7 93 273-366 47-148 (156)
181 2w87_A Esterase D, XYL-CBM35; 53.8 39 0.0013 29.2 7.7 87 272-364 38-128 (139)
182 2klu_A T-cell surface glycopro 31.6 68 0.0023 23.9 4.4 35 559-593 12-46 (70)
No 1
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.89 E-value=2.7e-23 Score=196.65 Aligned_cols=148 Identities=17% Similarity=0.111 Sum_probs=112.3
Q ss_pred ccEEEccCCCCCccCCCCceEeeCCCCeecCCccc------ccCCCCCCCCCCceeeecCCCCCCCceEEeecCCCcceE
Q 006793 30 ASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSI------VSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYY 103 (631)
Q Consensus 30 ~~~~IdCG~~~~~~d~~~~~w~~Dd~~~~~g~~~~------~~~~~~~~~~~~~t~R~F~~~~g~~~cY~~pv~~~g~yl 103 (631)
..|+||||++. .+|..+|+|.+|+.+...|.... +......+..+|+|+|+|+. ..+|.||+.++|+|+
T Consensus 6 ~~~~INcGg~~-~~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~~G~Y~ 80 (174)
T 2jwp_A 6 VIWAVNAGGES-HVDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED----SFGYDIPIKEEGEYV 80 (174)
T ss_dssp EEEEEEETSSS-EEETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS----CEEEEEECCSCEEEE
T ss_pred EEEEEECCCCC-ccCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC----CeEEEEEeCCCeEEE
Confidence 36999999875 45678999999765432332211 01111223569999999985 379999998889999
Q ss_pred EEEEeecCCCCCCCCCCceEEEECCEEEeecCCCCccccCCCceEEEEEEEe-------------eCCeeeEEEeecCCC
Q 006793 104 IRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFV-------------KDGELDLCFYSFATD 170 (631)
Q Consensus 104 vRl~F~y~nyd~~~~~~~Fdv~i~~~~~l~~~~~~~~~~~~~~~~~e~i~~~-------------~~~~l~v~~~~~~~~ 170 (631)
|||||..-.+... ..+.|||+++|++++++||++.+++...++++|+.+.+ .++.|.|+|.|....
T Consensus 81 VrLhF~ei~~~~~-~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~~ 159 (174)
T 2jwp_A 81 LVLKFAEVYFAQS-QQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYD 159 (174)
T ss_dssp EEEEEECCSCCCS-SSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSSC
T ss_pred EEEEEeccccCCC-CCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEeccCCC
Confidence 9999976655543 47899999999999999999766555567788887653 567899999986567
Q ss_pred CceeeeEEEEEcC
Q 006793 171 PPVIASLEVQQID 183 (631)
Q Consensus 171 ~pfIn~iEl~~l~ 183 (631)
.||||||||++.+
T Consensus 160 ~a~inaIEI~~~~ 172 (174)
T 2jwp_A 160 NPKVCALFIMKGT 172 (174)
T ss_dssp SSSEEEEEEESSC
T ss_pred CcEEEEEEEEeCc
Confidence 8999999999754
No 2
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.83 E-value=4.3e-21 Score=181.51 Aligned_cols=152 Identities=22% Similarity=0.262 Sum_probs=110.7
Q ss_pred EEeeeeccCCCCCCCCCcCCCCCCCCCcCCCCCCCCCCCCCCceeeeccceeeCCCCCCCCChHHHHHHHhcCCCceEEE
Q 006793 199 VNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYN 278 (631)
Q Consensus 199 ~~~~R~n~G~~~~~~~~~~~~D~~dR~W~~d~~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~TA~~~~~~lt~~ 278 (631)
+.++|+||||.. + .|..+|.|.+|..|....... .......+. ....+|..||||||.+..+++|.
T Consensus 5 ~~~~~INcGg~~----~---~d~~gr~w~~D~~~~~~g~~~---~~~~~~~~~----~~~~~~~~lY~TaR~~~~~~tY~ 70 (174)
T 2jwp_A 5 KVIWAVNAGGES----H---VDVHGIHYRKDPLEGRVGRAS---DYGMKLPIL----RSNPEDQVLYQTERYNEDSFGYD 70 (174)
T ss_dssp HEEEEEEETSSS----E---EETTTEEECSSCSSTTCCCCC---CCCTTSCCS----SSCHHHHHTTTCCCCCCSCEEEE
T ss_pred cEEEEEECCCCC----c---cCCCCCEEcCCcCcccCCccc---ccccceEec----ccCCCCchhhhhhccCCCCeEEE
Confidence 578999999753 2 256899999998765211100 001111111 12336899999999987789999
Q ss_pred EecCCCCceEEEEEeeccccccccCCceEEEEEECCe-eccccceeccCCCccceeeeeeEee------------cCCce
Q 006793 279 LAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGSFAAYSWHYVAKN------------LSSTE 345 (631)
Q Consensus 279 ~~v~~~~~y~v~LhFaEi~~~~~~~~~R~F~V~in~~-~l~~~di~~~~g~~~~~~~~~~~l~------------ls~n~ 345 (631)
++++++++|+|||||||+.. .+.++|+|+|++||+ .++++|+...+|+..+..+.+.+.. ..++.
T Consensus 71 f~v~~~G~Y~VrLhF~ei~~--~~~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~ 148 (174)
T 2jwp_A 71 IPIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGK 148 (174)
T ss_dssp EECCSCEEEEEEEEEECCSC--CCSSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSE
T ss_pred EEeCCCeEEEEEEEEecccc--CCCCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCe
Confidence 99998889999999999975 357899999999998 6788999887776556555544321 24568
Q ss_pred EEEEEccc-chhhhhhcccccc
Q 006793 346 LTVKLVPV-VGAALISGLENYA 366 (631)
Q Consensus 346 L~~~l~~~-~~~~~Ln~lEi~~ 366 (631)
|.++|.|. ...|++||||+++
T Consensus 149 L~I~f~p~~~~~a~inaIEI~~ 170 (174)
T 2jwp_A 149 LSVEFVKGYYDNPKVCALFIMK 170 (174)
T ss_dssp EEEEEECSSSCSSSEEEEEEES
T ss_pred EEEEEeccCCCCcEEEEEEEEe
Confidence 99999875 3349999999985
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=2.8e-17 Score=170.48 Aligned_cols=154 Identities=24% Similarity=0.418 Sum_probs=128.0
Q ss_pred CCchhHHHHHHHHHHhcCCCC-CCCCCC--CCCCCCCCCCCcceeecCCCCCceeEEEEEEecCCCCcc--cCchhhccc
Q 006793 373 STVPEQVIAMRALKESLRVPD-RMGWNG--DPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG--YISDKISLL 447 (631)
Q Consensus 373 ~~~p~~~~~l~~l~~~~~~~~-~~~w~g--dpc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g--~~p~~~~~l 447 (631)
.+.+.|..||.++|..+..+. ..+|.. ++|. +.|.||.|.... ...+++.|+|++|.++| .+|+.+.++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~----~~w~gv~C~~~~--~~~~l~~L~L~~~~l~~~~~~~~~l~~l 75 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN----RTWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSSLANL 75 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT----TCSTTEEECCSS--SCCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc----CCCcceEeCCCC--CCceEEEEECCCCCccCCcccChhHhCC
Confidence 356889999999999886543 347854 4552 359999997532 11358999999999998 899999999
Q ss_pred cccccccccc-ccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeE
Q 006793 448 SNLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 525 (631)
Q Consensus 448 ~~L~~L~Ls~-N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l 525 (631)
++|++|+|++ |.+.|.+|..++. ++|++|+|++|+++|.+|..+.++++|++|+|++|++++.+|..+..+. +|+.|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC-CCCeE
Confidence 9999999995 9999999998888 9999999999999988999999999999999999999988888887775 78889
Q ss_pred eecCCCCC
Q 006793 526 DLSGNKGL 533 (631)
Q Consensus 526 ~l~~N~~l 533 (631)
++++|.+.
T Consensus 155 ~L~~N~l~ 162 (313)
T 1ogq_A 155 TFDGNRIS 162 (313)
T ss_dssp ECCSSCCE
T ss_pred ECcCCccc
Confidence 99888854
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=3e-17 Score=191.57 Aligned_cols=145 Identities=20% Similarity=0.282 Sum_probs=122.4
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCCCC-------CCCCCCCCCCC------------cceeecCCCCCceeEEEEEEecCC
Q 006793 374 TVPEQVIAMRALKESLRVPDRMGWNG-------DPCAPTNWDAW------------EGITCHPNKDETAVVISQIDLGSQ 434 (631)
Q Consensus 374 ~~p~~~~~l~~l~~~~~~~~~~~w~g-------dpc~~~~~~~w------------~gv~c~~~~~~~~~~l~~L~Ls~n 434 (631)
+...|..||.++|..+..+ +|+. +|| .|.| .||.|+.. .+++.|+|++|
T Consensus 266 ~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~----~C~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls~~ 333 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK---NWRYYSGTINNTIH----SLNWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLAGF 333 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCC----CCSCCCSSCGGGTTCCTTEEECTT-----SCEEEEECTTT
T ss_pred cchHHHHHHHHHHHHcCCC---CCCcCCCcccccCC----ccccccccccccccCcCceEecCC-----CCEEEEECccC
Confidence 3467999999999988665 6753 343 1689 99999752 35899999999
Q ss_pred CCcccCchhhccccccccccc-ccccCCCC--------------------------------------------------
Q 006793 435 GLKGYISDKISLLSNLVNLNL-STNSLGGT-------------------------------------------------- 463 (631)
Q Consensus 435 ~l~g~~p~~~~~l~~L~~L~L-s~N~l~g~-------------------------------------------------- 463 (631)
+|.|.+|++|++|++|+.|+| ++|.++|.
T Consensus 334 ~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~ 413 (876)
T 4ecn_A 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413 (876)
T ss_dssp CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence 999999999999999999999 77766555
Q ss_pred --------------------------CCCcccc-ccccccccccccCCC-----------------CCCccCC--CCCCC
Q 006793 464 --------------------------LPSGLGQ-QSLVRLDLSDNQFTG-----------------SIPDSLT--SSSKL 497 (631)
Q Consensus 464 --------------------------iP~~~~~-~~L~~L~Ls~N~l~g-----------------~iP~~l~--~l~~L 497 (631)
||..++. ++|+.|+|++|+|+| .+|+.++ ++++|
T Consensus 414 ~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L 493 (876)
T 4ecn_A 414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493 (876)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred ccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCC
Confidence 7888888 899999999999998 3899988 99999
Q ss_pred CEEEcccCcCccccchhhhhccCCCCeEeecCCC
Q 006793 498 QLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 498 ~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
+.|+|++|++.|.+|..+..+. +|+.|++++|+
T Consensus 494 ~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~ 526 (876)
T 4ecn_A 494 TDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNR 526 (876)
T ss_dssp CEEEEESCTTCCSCCGGGGGCS-SCCEEECTTCT
T ss_pred CEEECcCCCCCccChHHHhCCC-CCCEEECcCCC
Confidence 9999999999999998888776 78999999987
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.67 E-value=4.3e-17 Score=185.54 Aligned_cols=146 Identities=18% Similarity=0.286 Sum_probs=111.3
Q ss_pred CchhHHHHHHHHHHhcCCCCC----------CCCCCC-CCCCCCCCCC---cceeecCCCCCceeEEEEEEecCCCCccc
Q 006793 374 TVPEQVIAMRALKESLRVPDR----------MGWNGD-PCAPTNWDAW---EGITCHPNKDETAVVISQIDLGSQGLKGY 439 (631)
Q Consensus 374 ~~p~~~~~l~~l~~~~~~~~~----------~~w~gd-pc~~~~~~~w---~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ 439 (631)
....|..||.+++.....+.+ .+|+.+ +| |.| .||.|+.. .+++.|+|++|+++|.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~-----c~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g~ 96 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL-----DMWGAQPGVSLNSN-----GRVTGLSLEGFGASGR 96 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG-----GGTTCCTTEEECTT-----CCEEEEECTTSCCEEE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc-----ccccCCCCeEEcCC-----CCEEEEEecCcccCCc
Confidence 345689999999987654432 257542 23 688 99999754 3699999999999999
Q ss_pred CchhhcccccccccccccccC-----------------------------------------------------------
Q 006793 440 ISDKISLLSNLVNLNLSTNSL----------------------------------------------------------- 460 (631)
Q Consensus 440 ~p~~~~~l~~L~~L~Ls~N~l----------------------------------------------------------- 460 (631)
+|+++++|++|++|+|++|.+
T Consensus 97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence 999999999999999999843
Q ss_pred -------------------CCCCCCcccc-ccccccccccccCCCC-----------------CCccCC--CCCCCCEEE
Q 006793 461 -------------------GGTLPSGLGQ-QSLVRLDLSDNQFTGS-----------------IPDSLT--SSSKLQLVL 501 (631)
Q Consensus 461 -------------------~g~iP~~~~~-~~L~~L~Ls~N~l~g~-----------------iP~~l~--~l~~L~~L~ 501 (631)
+| ||+.++. ++|+.|+|++|+|+|. +|+.++ ++++|++|+
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence 34 6666777 7777777777777765 777777 777777777
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
|++|++.|.+|..+..+. +|+.|++++|.
T Consensus 256 L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~ 284 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALP-EMQLINVACNR 284 (636)
T ss_dssp EECCTTCSSCCTTTTTCS-SCCEEECTTCT
T ss_pred ecCCcCCccChHHHhcCC-CCCEEECcCCC
Confidence 777777777777766665 67777777775
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.62 E-value=8.5e-17 Score=187.15 Aligned_cols=122 Identities=31% Similarity=0.505 Sum_probs=108.8
Q ss_pred CceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCE
Q 006793 421 ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (631)
Q Consensus 421 ~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~ 499 (631)
+.+..|+.|+|++|.++|.+|.++++|+.|+.|+|++|+++|.+|..++. ++|+.|||++|+++|.+|..++++++|++
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 34567899999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred EEcccCcCccccchhhhhccCCCCeEeecCCCCCCCCCCCCCCCCc
Q 006793 500 VLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLF 545 (631)
Q Consensus 500 L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~p~~~~c~~~ 545 (631)
|||++|+|+|.||..- .+ ..+....+.||+.+|+.|.. .|...
T Consensus 709 L~ls~N~l~g~iP~~~-~~-~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEMG-QF-ETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp EECCSSEEEEECCSSS-SG-GGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred EECcCCcccccCCCch-hh-ccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 9999999999999752 11 13456678899999998754 89743
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=2.2e-16 Score=183.60 Aligned_cols=114 Identities=30% Similarity=0.392 Sum_probs=96.9
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+.+|+.|+|++|.++|.+|..+..+++|+.|+|++|+++|.+|..+.. ++|+.|+|++|+++|.+|.+++.+++|+.|+
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 345788888888888888888888888888888888888888888888 8888888888888888888888888888888
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCCCCCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAP 537 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~p 537 (631)
|++|+++|.+|..+..+. +|+.|++++|++.|..|
T Consensus 521 L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCSSCCEEECCGGGGGCT-TCCEEECCSSEEESBCC
T ss_pred CCCCcccCcCCHHHcCCC-CCCEEECCCCccCCcCC
Confidence 888888888888887775 78888888888766544
No 8
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=1.4e-15 Score=146.00 Aligned_cols=133 Identities=19% Similarity=0.268 Sum_probs=114.2
Q ss_pred CCCCCCCCCcceeecCCCCCce-----eEEEEEEecCCCCcccCch-hhcccccccccccccccCCCCCCCcccc-cccc
Q 006793 402 CAPTNWDAWEGITCHPNKDETA-----VVISQIDLGSQGLKGYISD-KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV 474 (631)
Q Consensus 402 c~~~~~~~w~gv~c~~~~~~~~-----~~l~~L~Ls~n~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~ 474 (631)
|.....|.|..+.|.......+ ..++.|+|++|.+++..+. .+..+++|++|+|++|++++..|..+.. ++|+
T Consensus 2 CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp CCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred cCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 4334458899999986543322 2688999999999976665 4899999999999999999888999999 9999
Q ss_pred ccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 475 RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 475 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
.|+|++|++++..|..|.++++|++|+|++|++++.+|..+..+. +|+.|++++|++.|.
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-SLTSLNLASNPFNCN 141 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-TCCEEECTTCCBCCS
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC-CCCEEEeCCCCccCc
Confidence 999999999988888899999999999999999998888877765 899999999999884
No 9
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=9.1e-15 Score=140.60 Aligned_cols=134 Identities=17% Similarity=0.231 Sum_probs=110.3
Q ss_pred CCCCCCCCCCCcceeecCCCCCc-----eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccc
Q 006793 400 DPCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL 473 (631)
Q Consensus 400 dpc~~~~~~~w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L 473 (631)
.+|.....|.|..+.|....... ...|+.|+|++|.|+ .+|..|.++++|+.|+|++|.+++..|..+.. ++|
T Consensus 2 ~~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp --CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 34654445788888897654322 235899999999998 78899999999999999999999666667888 999
Q ss_pred cccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
+.|+|++|++++..|..|.++++|+.|+|++|+++ .+|...+....+|+.|++++|++.|.
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeecC
Confidence 99999999999877788999999999999999999 56655444345899999999999984
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.54 E-value=4.2e-16 Score=161.62 Aligned_cols=184 Identities=24% Similarity=0.341 Sum_probs=130.6
Q ss_pred eeeEeecCCceEEEEEcccchhhhhhccccccccCCCCC-CchhHHHHHH-HHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 006793 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS-TVPEQVIAMR-ALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (631)
Q Consensus 335 ~~~~l~ls~n~L~~~l~~~~~~~~Ln~lEi~~l~~~~~~-~~p~~~~~l~-~l~~~~~~~~~~~w~gdpc~~~~~~~w~g 412 (631)
.+..+++++|.++..++...+. +..++.+.+..+... .+|..+..+. .|+... . +. +...|
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~-L----~~----------N~l~~ 188 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISS--LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT-I----SR----------NRLTG 188 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGG--CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE-C----CS----------SEEEE
T ss_pred CCCEEeCCCCccCCcCChHHhc--CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE-C----cC----------Ceeec
Confidence 4566677777776555555443 555666666666543 5555444332 222111 0 00 01111
Q ss_pred eeecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccC
Q 006793 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (631)
Q Consensus 413 v~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l 491 (631)
. .+.....+. |+.|+|++|.+++.+|..+..+++|+.|+|++|.+++.+|. +.. ++|+.|+|++|+++|.+|..+
T Consensus 189 ~--~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 189 K--IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp E--CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred c--CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence 0 011112223 88999999999999999999999999999999999977766 666 999999999999999999999
Q ss_pred CCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCCCCCCCCCC
Q 006793 492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSC 542 (631)
Q Consensus 492 ~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~p~~~~c 542 (631)
..+++|+.|+|++|+++|.+|.. ..+. +|+.+++++|+.+|+.|.. .|
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~-~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQ-RFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGG-GSCGGGTCSSSEEESTTSS-CC
T ss_pred hcCcCCCEEECcCCcccccCCCC-cccc-ccChHHhcCCCCccCCCCC-CC
Confidence 99999999999999999999986 4443 7889999999999987643 56
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.53 E-value=3e-15 Score=156.26 Aligned_cols=190 Identities=19% Similarity=0.271 Sum_probs=138.1
Q ss_pred eeeeEeecCCceEEEEEcccchhhhhhccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 006793 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (631)
Q Consensus 334 ~~~~~l~ls~n~L~~~l~~~~~~~~Ln~lEi~~l~~~~~~~~p~~~~~l~~l~~~~~~~~~~~w~gdpc~~~~~~~w~gv 413 (631)
..+..+++++|.++ .++...+. +..++.+.+..+....+|..+..+.+|+...-... ...+. .|. .+...
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~--l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n--~~~~~--~p~---~~~~~ 173 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQ--FAGLETLTLARNPLRALPASIASLNRLRELSIRAC--PELTE--LPE---PLAST 173 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGG--GTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE--TTCCC--CCS---CSEEE
T ss_pred CCCCEEECCCCCcc-chhHHHhc--cCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC--CCccc--cCh---hHhhc
Confidence 34666777777777 66665554 66677777777776677777666555544211000 00000 000 00000
Q ss_pred eecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCC
Q 006793 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (631)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~ 492 (631)
.. ......+.+|+.|+|++|.++ .+|..++.+++|+.|+|++|.++ .+|+.+.. ++|+.|+|++|++.+.+|..++
T Consensus 174 ~~-~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 174 DA-SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp C--CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred cc-hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence 00 000112446889999999999 88999999999999999999999 58888888 9999999999999999999999
Q ss_pred CCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCCCCC
Q 006793 493 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAP 537 (631)
Q Consensus 493 ~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~p 537 (631)
.+++|+.|+|++|++.+.+|..+..+. +|+.|++++|+++...|
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCT-TCCEEECTTCTTCCCCC
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCC-CCCEEeCCCCCchhhcc
Confidence 999999999999999999999987776 89999999999776554
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.53 E-value=3.1e-15 Score=156.13 Aligned_cols=140 Identities=19% Similarity=0.271 Sum_probs=75.7
Q ss_pred CCCchhHHHHHHHHHHhcC-CCC--CCCCCC-CCCCCCCCCCCcceeecCCC----CCceeEEEEEEecCCCCcccCchh
Q 006793 372 LSTVPEQVIAMRALKESLR-VPD--RMGWNG-DPCAPTNWDAWEGITCHPNK----DETAVVISQIDLGSQGLKGYISDK 443 (631)
Q Consensus 372 ~~~~p~~~~~l~~l~~~~~-~~~--~~~w~g-dpc~~~~~~~w~gv~c~~~~----~~~~~~l~~L~Ls~n~l~g~~p~~ 443 (631)
.+.+.++..+|.++|..+. .+. ...|.. ..|.+ ..|.|.|+.|.... .....+++.|+|++|.++ .+|+.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~-~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNP-QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCT-TSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccc-cccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 4567789999999998663 221 124520 11111 12689999994100 000123455555555555 45555
Q ss_pred hcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhh
Q 006793 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515 (631)
Q Consensus 444 ~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l 515 (631)
++.+++|++|+|++|.++ .+|..++. ++|+.|+|++|+++ .+|..++++++|++|++++|++.+.+|..+
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence 555555555555555555 55555555 55555555555555 455555555555555555555555555443
No 13
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=3.3e-14 Score=134.32 Aligned_cols=128 Identities=19% Similarity=0.218 Sum_probs=105.8
Q ss_pred CCCCcceeecCCCCC-----ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-cccccccccc
Q 006793 407 WDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD 480 (631)
Q Consensus 407 ~~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~ 480 (631)
.|.|.++.|...... ....|+.|+|++|.+++..+..+..+++|++|+|++|++++..+..+.. ++|+.|+|++
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 378999999765422 2246899999999999777777899999999999999999544445677 9999999999
Q ss_pred ccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 481 NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 481 N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
|++++..|..+..+++|+.|++++|+++ .+|...+....+|+.|++++|++.|.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeecc
Confidence 9999766667899999999999999999 56666544445899999999998874
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=1.8e-14 Score=141.44 Aligned_cols=133 Identities=12% Similarity=0.157 Sum_probs=85.8
Q ss_pred CCCCCCCCCCcceeecCCCCCce-----eEEEEEEecCCCCcccCch-hhcccccccccccccccCCCCCCCcccc-ccc
Q 006793 401 PCAPTNWDAWEGITCHPNKDETA-----VVISQIDLGSQGLKGYISD-KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL 473 (631)
Q Consensus 401 pc~~~~~~~w~gv~c~~~~~~~~-----~~l~~L~Ls~n~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L 473 (631)
+|...+.|.|..+.|.......+ ..++.|+|++|.|++..+. .|..+++|+.|+|++|++++..|..+.. ++|
T Consensus 4 ~CP~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 4 ACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp CCCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 45444457788888865432221 1356677777777765443 4677777777777777777544445666 777
Q ss_pred cccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
+.|+|++|++++..|..|.++++|++|+|++|++++..|..+..+. +|+.|++++|.+..
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-SVRLLSLYDNQITT 143 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT-TCSEEECTTSCCCC
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc-cCCEEECCCCcCCE
Confidence 7777777777765555577777777777777777765565555543 66777777776443
No 15
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=2.3e-13 Score=134.31 Aligned_cols=124 Identities=22% Similarity=0.283 Sum_probs=105.4
Q ss_pred CCCcceeecCCCCCc-----eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCc-ccc-cccccccccc
Q 006793 408 DAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSD 480 (631)
Q Consensus 408 ~~w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~-~~L~~L~Ls~ 480 (631)
|.|.++.|....... ...|+.|+|++|.+++..|..|..+++|+.|+|++|+++ .+|.. +.. ++|+.|+|++
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred EeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence 689999998654332 245889999999999988999999999999999999998 66654 566 9999999999
Q ss_pred ccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 481 NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 481 N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
|++++..+..+..+++|+.|+|++|+++ .+|..+..+. +|+.|++++|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT-HLTHLALDQNQLKS 149 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCT-TCSEEECCSSCCCC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCC-CCCEEECCCCcCCc
Confidence 9999766666889999999999999999 8898887665 89999999998553
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.43 E-value=2.3e-14 Score=163.08 Aligned_cols=112 Identities=16% Similarity=0.225 Sum_probs=72.0
Q ss_pred CCceeEEEEEEecCCCCccc-----------------Cchhhc--ccccccccccccccCCCCCCCcccc-ccccccccc
Q 006793 420 DETAVVISQIDLGSQGLKGY-----------------ISDKIS--LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLS 479 (631)
Q Consensus 420 ~~~~~~l~~L~Ls~n~l~g~-----------------~p~~~~--~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls 479 (631)
.+.+.+|+.|+|++|.++|. +|+.++ ++++|++|+|++|.+.|.+|..++. ++|+.|+|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 33445566666666666664 666666 6666666666666666666666666 666666666
Q ss_pred ccc-CCC-CCCccCCCC------CCCCEEEcccCcCccccch--hhhhccCCCCeEeecCCCCC
Q 006793 480 DNQ-FTG-SIPDSLTSS------SKLQLVLLNNNLLEGRVPE--ELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 480 ~N~-l~g-~iP~~l~~l------~~L~~L~ls~N~l~g~iP~--~l~~~~~~L~~l~l~~N~~l 533 (631)
+|+ ++| .+|..++.+ ++|++|++++|+++ .+|. .+..+. +|+.|++++|.+.
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~ 343 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK-KLGMLECLYNQLE 343 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC-CCCEEeCcCCcCc
Confidence 666 666 666666554 66666666666666 6666 555543 5666666666644
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.43 E-value=6.2e-14 Score=143.65 Aligned_cols=178 Identities=21% Similarity=0.206 Sum_probs=123.0
Q ss_pred eeeEeecCCceEEEEEcccchhhhhhccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 006793 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (631)
Q Consensus 335 ~~~~l~ls~n~L~~~l~~~~~~~~Ln~lEi~~l~~~~~~~~p~~~~~l~~l~~~~~~~~~~~w~gdpc~~~~~~~w~gv~ 414 (631)
.+..+++++|.++...+..... +..++.+.+..+....++.. ..+..|+... . +.+ .+.
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~-L----s~N-------------~l~ 90 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMP--YTRLTQLNLDRAELTKLQVD-GTLPVLGTLD-L----SHN-------------QLQ 90 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTT--CTTCCEEECTTSCCCEEECC-SCCTTCCEEE-C----CSS-------------CCS
T ss_pred CCCEEEcCCCcCCccCHHHhhc--CCCCCEEECCCCccCcccCC-CCCCcCCEEE-C----CCC-------------cCC
Confidence 4556777777776443333332 45566666666665555432 1121222110 0 111 000
Q ss_pred ecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCC
Q 006793 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (631)
Q Consensus 415 c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~ 493 (631)
..+.....+..|+.|+|++|.+++..+..|.++++|+.|+|++|++++..+..+.. ++|+.|+|++|+|++..+..+..
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 170 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcC
Confidence 00111223456889999999999877788999999999999999999544444566 99999999999999544445688
Q ss_pred CCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 494 l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
+++|+.|+|++|+++ .+|..++... .|+.+++++|++.|.
T Consensus 171 l~~L~~L~L~~N~l~-~ip~~~~~~~-~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 171 LENLDTLLLQENSLY-TIPKGFFGSH-LLPFAFLHGNPWLCN 210 (290)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTC-CCSEEECCSCCBCCS
T ss_pred cCCCCEEECCCCcCC-ccChhhcccc-cCCeEEeCCCCccCc
Confidence 999999999999999 8999888776 789999999999984
No 18
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=1.9e-13 Score=134.02 Aligned_cols=133 Identities=21% Similarity=0.202 Sum_probs=96.0
Q ss_pred CCCCCCCCCCcceeecCCCCCce-----eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-cccc
Q 006793 401 PCAPTNWDAWEGITCHPNKDETA-----VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV 474 (631)
Q Consensus 401 pc~~~~~~~w~gv~c~~~~~~~~-----~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~ 474 (631)
+|...+.|.|..+.|.......+ ..++.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+.. ++|+
T Consensus 4 ~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 4 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83 (220)
T ss_dssp CSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred CCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence 45545558888899975442221 24778888888888766667888888888888888888666777777 8888
Q ss_pred ccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 475 RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 475 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
.|+|++|+|+...+..|.++++|+.|+|++|++++..|..+..+. +|+.|++++|.+..
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH-NLNLLSLYDNKLQT 142 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSC
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC-CCCEEECCCCcCCE
Confidence 888888888843333467788888888888888866666655554 77888888887543
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=6.5e-15 Score=171.91 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=83.4
Q ss_pred ceeEEEEEEecCCCCcccCchhhccccccccccccccc-CCC-CCCCcccc-c-------cccccccccccCCCCCCc--
Q 006793 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGG-TLPSGLGQ-Q-------SLVRLDLSDNQFTGSIPD-- 489 (631)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~-l~g-~iP~~~~~-~-------~L~~L~Ls~N~l~g~iP~-- 489 (631)
.+.+|+.|+|++|.+.|.+|..|++|++|+.|+|++|+ ++| .+|..++. + +|+.|+|++|+++ .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 45667888888888888888888888888888888887 887 77777665 5 7888888888888 7887
Q ss_pred cCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 490 SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 490 ~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
.++++++|+.|+|++|+++ .+| .+..+. +|+.|++++|.+.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-KLTDLKLDYNQIE 608 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTS-EESEEECCSSCCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCC-cceEEECcCCccc
Confidence 7888888888888888887 777 554443 6778888888754
No 20
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.41 E-value=2.6e-13 Score=135.75 Aligned_cols=109 Identities=22% Similarity=0.238 Sum_probs=92.9
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
.++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.. ++|+.|+|++|++++..|..+..+++|++|+|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 5789999999999888889999999999999999999777777788 999999999999997666778999999999999
Q ss_pred cCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
+|+++ .+|...+....+|+.|++++|.+..
T Consensus 116 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCcCC-CcChhHhccCCcccEEECcCCcCCc
Confidence 99999 4555443333489999999998543
No 21
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=1.2e-13 Score=145.88 Aligned_cols=135 Identities=21% Similarity=0.160 Sum_probs=110.9
Q ss_pred CCCCCCCCCCCCCcceeecCCCCCce-----eEEEEEEecCCCCcccCchhhc-ccccccccccccccCCCCCCCcccc-
Q 006793 398 NGDPCAPTNWDAWEGITCHPNKDETA-----VVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ- 470 (631)
Q Consensus 398 ~gdpc~~~~~~~w~gv~c~~~~~~~~-----~~l~~L~Ls~n~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g~iP~~~~~- 470 (631)
....|...+.|.+..+.|.......+ ..++.|+|++|.|++..+..+. ++++|+.|+|++|+|++..|..+..
T Consensus 8 ~~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 8 SVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87 (361)
T ss_dssp CCTTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred cCCCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence 34567666668888899975543222 2378899999999987777787 9999999999999999666667888
Q ss_pred ccccccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 471 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
++|+.|+|++|+|++..+..|.++++|+.|+|++|++++..|..+..+. +|+.|++++|.+.
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~ 149 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-QLQKLYLSQNQIS 149 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-cCCEEECCCCcCC
Confidence 9999999999999976666799999999999999999977777776665 8999999999854
No 22
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=5.1e-13 Score=129.46 Aligned_cols=126 Identities=20% Similarity=0.186 Sum_probs=101.7
Q ss_pred CCCCcceeecCCCCC-----ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-cccccccccc
Q 006793 407 WDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD 480 (631)
Q Consensus 407 ~~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~ 480 (631)
.|.|.++.|...... ....++.|+|++|.+++..+..+..+++|++|+|++|++++..+..+.. ++|+.|+|++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 388999999755422 2235899999999999777777899999999999999999444444567 9999999999
Q ss_pred ccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 481 NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 481 N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
|++++..+..+..+++|++|++++|++++..+..+..+ .+|+.|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL-TQLKDLRLYQNQLK 137 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCS
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccC-CcCCEEECCCCccc
Confidence 99996555668999999999999999995444444444 48999999999865
No 23
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.39 E-value=3.3e-13 Score=136.52 Aligned_cols=134 Identities=23% Similarity=0.279 Sum_probs=100.8
Q ss_pred CCCCCCCCCCCCCCCcceeecCCCCCce-----eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcc-c
Q 006793 396 GWNGDPCAPTNWDAWEGITCHPNKDETA-----VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-G 469 (631)
Q Consensus 396 ~w~gdpc~~~~~~~w~gv~c~~~~~~~~-----~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~-~ 469 (631)
.|.|..|.-. ..|..+.|.......+ ..++.|+|++|.+++..+..|.++++|++|+|++|.++ .+|..+ .
T Consensus 6 ~~~~~~C~c~--~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~ 82 (270)
T 2o6q_A 6 KKDGGVCSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFK 82 (270)
T ss_dssp GGGTCSBEEE--TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTS
T ss_pred CCCCCCCEeC--CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhc
Confidence 4555555311 1455666654432221 24789999999999777778999999999999999999 666654 5
Q ss_pred c-ccccccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 470 Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 470 ~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
. ++|+.|+|++|++++..+..+..+++|++|++++|++++..|..+..+ .+|+.|++++|.+.
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL-TKLTYLSLGYNELQ 146 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcC-cCCCEEECCCCcCC
Confidence 6 899999999999996555667889999999999999996555555555 48999999999854
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=5.8e-13 Score=133.19 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=94.6
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
.+|+.|+|++|.+++..+..+..+++|++|+|++|++++..+..+.. ++|+.|+|++|++++..|..+..+++|+.|+|
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 45889999999999877788999999999999999999544444677 99999999999999766667999999999999
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
++|++++..|..+..+ .+|+.|++++|++.|.
T Consensus 163 ~~N~l~~~~~~~~~~l-~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 163 STNQLQSVPHGAFDRL-GKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCSCCCTTTTTTC-TTCCEEECCSCCBCTT
T ss_pred CCCcCCccCHHHHhCC-CCCCEEEeeCCceeCC
Confidence 9999996555555555 4899999999999884
No 25
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=4e-13 Score=131.81 Aligned_cols=111 Identities=23% Similarity=0.250 Sum_probs=98.1
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCc-ccc-ccccccccccccCCCCCCccCCCCCCCCEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (631)
+.+|+.|+|++|.+++..|..|.++++|++|+|++|.|+ .+|.. +.. ++|+.|+|++|++++..|..|..+++|+.|
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence 345889999999999988999999999999999999999 67766 456 999999999999998888999999999999
Q ss_pred EcccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 501 ~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
+|++|++++..+..+..+ .+|+.|++++|++.|.
T Consensus 134 ~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 134 SLYDNKLQTIAKGTFSPL-RAIQTMHLAQNPFICD 167 (220)
T ss_dssp ECCSSCCSCCCTTTTTTC-TTCCEEECCSSCEECS
T ss_pred ECCCCcCCEECHHHHhCC-CCCCEEEeCCCCcCCC
Confidence 999999996555555555 4899999999999883
No 26
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.38 E-value=2.1e-13 Score=138.88 Aligned_cols=181 Identities=20% Similarity=0.191 Sum_probs=120.4
Q ss_pred eeeEeecCCceEEEEEcccchhhhhhccccccccCCC-CCCc-hhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 006793 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPND-LSTV-PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (631)
Q Consensus 335 ~~~~l~ls~n~L~~~l~~~~~~~~Ln~lEi~~l~~~~-~~~~-p~~~~~l~~l~~~~~~~~~~~w~gdpc~~~~~~~w~g 412 (631)
.+..+++++|.++...+..... +..++.+.+..+. .+.+ |..+..+.+|+...-... ...+
T Consensus 57 ~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n---------------~l~~ 119 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAAAFTG--LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC---------------GLQE 119 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS---------------CCCC
T ss_pred CCCEEECCCCccceeCHhhcCC--ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC---------------cCCE
Confidence 4666777777766333333332 4556666666664 5544 333333333332111000 0111
Q ss_pred eeecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccC
Q 006793 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (631)
Q Consensus 413 v~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l 491 (631)
+. +.....+.+|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+.. ++|+.|+|++|++++..|..+
T Consensus 120 ~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 197 (285)
T 1ozn_A 120 LG--PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197 (285)
T ss_dssp CC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred EC--HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc
Confidence 10 011223456888999999998776677889999999999999998444445777 899999999999998888899
Q ss_pred CCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 492 ~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
..+++|+.|++++|++++..+..+..+ .+|+.|++++|++.|.
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTEALAPL-RALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTC-TTCCEEECCSSCEECS
T ss_pred cCcccccEeeCCCCcCCcCCHHHcccC-cccCEEeccCCCccCC
Confidence 999999999999999986444445444 4889999999998884
No 27
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.35 E-value=4e-13 Score=135.91 Aligned_cols=112 Identities=24% Similarity=0.275 Sum_probs=94.4
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+.+|+.|+|++|.+++..+..|..+++|+.|+|++|.+++..+..+.. ++|+.|+|++|++++..|..+..+++|+.|+
T Consensus 108 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187 (270)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence 456899999999999888888999999999999999999444444677 9999999999999976666789999999999
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
|++|++++ +|...+....+|+.|++++|++.|.
T Consensus 188 L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 188 LDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCCCcCCc-CCHHHhccccCCCEEEecCCCeeCC
Confidence 99999994 5555444344899999999999884
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.34 E-value=2e-13 Score=140.44 Aligned_cols=113 Identities=20% Similarity=0.247 Sum_probs=93.1
Q ss_pred eeEEEEEEecCCCCcc-cCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEE
Q 006793 423 AVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (631)
+..|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++..|..+.. ++|+.|+|++|++++..+..+..+++|+.|
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 3457888899998886 57788888889999999999988766777877 889999999998887666678888899999
Q ss_pred EcccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 501 ~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
++++|++++..|..+..+..+|+.|++++|++.|.
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 99999998888887777655788899999988773
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.34 E-value=6.4e-13 Score=144.34 Aligned_cols=134 Identities=18% Similarity=0.167 Sum_probs=106.4
Q ss_pred CCCCCCCCCCCcceeecCCCCCce----eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCC-cccc-ccc
Q 006793 400 DPCAPTNWDAWEGITCHPNKDETA----VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSL 473 (631)
Q Consensus 400 dpc~~~~~~~w~gv~c~~~~~~~~----~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~-~~~~-~~L 473 (631)
|||...+.|....+.|.......+ ..|+.|+|++|.+++..|..|.++++|++|+|++|.+.+.+|+ .+.. ++|
T Consensus 2 ~p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 2 DPGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp -----CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred CCccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence 566543323333488875543222 3589999999999998899999999999999999999888765 5777 999
Q ss_pred cccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchh--hhhccCCCCeEeecCCCCCC
Q 006793 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE--LYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~--l~~~~~~L~~l~l~~N~~lc 534 (631)
++|+|++|++++..|..++++++|++|++++|++++.+|.. +..+. +|+.|++++|.+..
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~L~~n~l~~ 143 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT-SLEMLVLRDNNIKK 143 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT-TCCEEECCSSBCCS
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc-cCCEEECCCCccCc
Confidence 99999999999888999999999999999999999877655 55554 89999999998644
No 30
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=1.4e-12 Score=128.75 Aligned_cols=110 Identities=22% Similarity=0.232 Sum_probs=94.0
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
.+|+.|+|++|.|++..+..|..+++|+.|+|++|+|++..+..+.. ++|+.|+|++|+|+ .+|..+..+++|++|+|
T Consensus 64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEEC
T ss_pred cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEEC
Confidence 45889999999998666667899999999999999999544455677 99999999999999 89999999999999999
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
++|++++..+..+..+ .+|+.|++++|++.|.
T Consensus 143 ~~N~l~~~~~~~~~~l-~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 143 DQNQLKSIPHGAFDRL-SSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTC-TTCCEEECTTSCBCTT
T ss_pred CCCcCCccCHHHHhCC-CCCCEEEeeCCCccCC
Confidence 9999994444444444 5899999999999884
No 31
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.33 E-value=8.4e-13 Score=135.17 Aligned_cols=107 Identities=24% Similarity=0.226 Sum_probs=92.2
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
..++.|+|++|.+++..+..|..+++|+.|+|++|.++ .+|.. .. ++|+.|+|++|+++ .+|..+..+++|+.|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 35889999999999888889999999999999999999 45554 55 89999999999998 79999999999999999
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
++|++++..|..+..+. +|+.|++++|.+..
T Consensus 108 ~~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLG-ELQELYLKGNELKT 138 (290)
T ss_dssp CSSCCCCCCSSTTTTCT-TCCEEECTTSCCCC
T ss_pred CCCcCcccCHHHHcCCC-CCCEEECCCCCCCc
Confidence 99999955555565554 89999999998553
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.33 E-value=1.2e-12 Score=133.16 Aligned_cols=109 Identities=20% Similarity=0.157 Sum_probs=83.4
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-cccccccccccc-CCCCCCccCCCCCCCCEEE
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQ-FTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~-l~g~iP~~l~~l~~L~~L~ 501 (631)
..++.|+|++|.+++..+..|..+++|++|+|++|.+++..|..+.. ++|+.|+|++|+ +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 35778888888888766677888888888888888888666777777 888888888886 6654477788888888888
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
+++|++++..|..+..+. +|+.|++++|.+.
T Consensus 112 l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLA-ALQYLYLQDNALQ 142 (285)
T ss_dssp CTTSCCCCCCTTTTTTCT-TCCEEECCSSCCC
T ss_pred CCCCcCCEECHhHhhCCc-CCCEEECCCCccc
Confidence 888888865565555544 7788888888754
No 33
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=2.6e-12 Score=120.72 Aligned_cols=105 Identities=22% Similarity=0.234 Sum_probs=80.3
Q ss_pred EEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcccC
Q 006793 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505 (631)
Q Consensus 427 ~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N 505 (631)
+.|++++|.|+ .+|..+. ++|+.|+|++|++++..|..+.. ++|+.|+|++|+|++..|..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45777888887 4666553 78888999999998766777777 88999999999988655555788888999999999
Q ss_pred cCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 506 LLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 506 ~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
+|++..|..+..+ .+|+.|++++|++.|.
T Consensus 89 ~l~~~~~~~~~~l-~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNL-KSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTC-TTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCC-CCCCEEEeCCCCCCCC
Confidence 8885444344444 4788899999988874
No 34
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=8.7e-13 Score=123.30 Aligned_cols=105 Identities=23% Similarity=0.212 Sum_probs=88.0
Q ss_pred EEEEEEecCCCCc-ccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 425 VISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 425 ~l~~L~Ls~n~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
.|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. ..+.. ++|+.|+|++|++++.+|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 4788999999998 88898899999999999999999954 66777 89999999999999878888888999999999
Q ss_pred ccCcCccccc-hhhhhccCCCCeEeecCCCC
Q 006793 503 NNNLLEGRVP-EELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 503 s~N~l~g~iP-~~l~~~~~~L~~l~l~~N~~ 532 (631)
++|++++..+ ..+..+ ++|+.|++++|++
T Consensus 103 s~N~l~~~~~~~~l~~l-~~L~~L~l~~N~l 132 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKL-ECLKSLDLFNCEV 132 (168)
T ss_dssp BSSSCCSSGGGGGGSSC-SCCCEEECCSSGG
T ss_pred cCCccCcchhHHHHhcC-CCCCEEEeeCCcC
Confidence 9999985322 455554 4789999998873
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.31 E-value=5.6e-13 Score=150.34 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=98.9
Q ss_pred ceeEEEEEEecCCCCcc-cCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCE
Q 006793 422 TAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (631)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~ 499 (631)
.+.+|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++..|..+.. ++|+.|+|++|++++.+|..+.++++|+.
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 44568899999999987 47888999999999999999999888888888 99999999999999888999999999999
Q ss_pred EEcccCcCccccchhhhhccCCCCeEeecCCCCCCCC
Q 006793 500 VLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGA 536 (631)
Q Consensus 500 L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~ 536 (631)
|++++|+++ .+|..+..+..+|+.+++++|++.|..
T Consensus 526 L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 526 LDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp EECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred EECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 999999998 788887777656899999999998853
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.31 E-value=3.1e-12 Score=129.52 Aligned_cols=113 Identities=22% Similarity=0.201 Sum_probs=97.1
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
..|+.|+|++|.+++..+..+..+++|++|+|++|++++..|..+.. ++|+.|+|++|++++..|..++.+++|+.|++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 45889999999999887778999999999999999999655555677 99999999999999776777899999999999
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAP 537 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~p 537 (631)
++|++++..|..+..+. +|+.|++++|++.|..|
T Consensus 189 ~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLT-SLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCTT
T ss_pred CCCcCCccCHHHHhCCc-CCCEEEccCCCccccCc
Confidence 99999976665555554 89999999999988644
No 37
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=3.6e-12 Score=123.48 Aligned_cols=112 Identities=22% Similarity=0.210 Sum_probs=93.5
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
.+|+.|+|++|.+++..+..+..+++|++|+|++|++++..+..+.. ++|+.|+|++|++++..+..+..+++|+.|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 45889999999999776667899999999999999999544445677 99999999999999766666899999999999
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGA 536 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~ 536 (631)
++|++++..+..+..+ .+|+.|++++|++.|..
T Consensus 132 ~~N~l~~~~~~~~~~l-~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 132 YQNQLKSVPDGVFDRL-TSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp CSSCCSCCCTTTTTTC-TTCCEEECCSCCBCCCT
T ss_pred CCCccceeCHHHhccC-CCccEEEecCCCeecCC
Confidence 9999995444334444 48999999999988854
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.30 E-value=2.5e-12 Score=140.03 Aligned_cols=124 Identities=23% Similarity=0.215 Sum_probs=102.4
Q ss_pred CcceeecCCCCCc-----eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccC
Q 006793 410 WEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF 483 (631)
Q Consensus 410 w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l 483 (631)
|..+.|....... ...++.|+|++|.+++..|..|.++++|+.|+|++|++++..|..+.. ++|+.|+|++|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 5678886543221 235899999999999988999999999999999999999777788888 9999999999999
Q ss_pred CCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 484 TGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 484 ~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
++..+..+.++++|++|+|++|+++ .+|...+....+|+.|++++|..+.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCC
T ss_pred CccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCcc
Confidence 9666666999999999999999999 5555444444589999999876444
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.30 E-value=1.1e-12 Score=148.11 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=93.0
Q ss_pred cceeecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCc-ccc-ccccccccccccCCCCCC
Q 006793 411 EGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIP 488 (631)
Q Consensus 411 ~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~-~~L~~L~Ls~N~l~g~iP 488 (631)
.++.|.+.....+.+|+.|+|++|.+.+..|..+..+++|+.|+|++|.+++..|.. +.. ++|+.|++++|.+++..|
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence 344433333445567888888888888888888888888888888888888776655 666 888888898888888888
Q ss_pred ccCCCCCCCCEEEcccCcCccc-cc--hhhhhccCCCCeEeecCCCCCC
Q 006793 489 DSLTSSSKLQLVLLNNNLLEGR-VP--EELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 489 ~~l~~l~~L~~L~ls~N~l~g~-iP--~~l~~~~~~L~~l~l~~N~~lc 534 (631)
..++.+++|+.|++++|++++. +| ..+..+ .+|+.|++++|.+..
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-GRLEILVLSFCDLSS 490 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC-TTCCEEECTTSCCCE
T ss_pred HHHhCCCCCCEEECCCCCCCccccccchhhccC-CCccEEECCCCccCc
Confidence 8888888888999988888763 22 344444 378888888887543
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.29 E-value=1.1e-12 Score=132.98 Aligned_cols=109 Identities=16% Similarity=0.071 Sum_probs=94.6
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
.++.|+|++|.+++..+..+.++++|++|+|++|++++..+..+.. ++|+.|+|++|++++..|..+.++++|+.|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 4899999999999877779999999999999999999655667887 999999999999998777889999999999999
Q ss_pred cCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
+|++++..+..+..+. +|+.|++++|.+..
T Consensus 109 ~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 109 ETNLASLENFPIGHLK-TLKELNVAHNLIQS 138 (276)
T ss_dssp TSCCCCSTTCCCTTCT-TCCEEECCSSCCCC
T ss_pred CCCccccCchhcccCC-CCCEEECcCCccce
Confidence 9999965555565554 89999999998543
No 41
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=5.1e-12 Score=119.17 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=87.1
Q ss_pred EEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcccC
Q 006793 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505 (631)
Q Consensus 427 ~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N 505 (631)
+.+++++|+|+ .+|..+. ++|+.|+|++|+|++..|..+.. ++|+.|+|++|+|++..+..|.++++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46899999996 6787665 88999999999999777888888 99999999999999644445689999999999999
Q ss_pred cCccccchh-hhhccCCCCeEeecCCCCCCC
Q 006793 506 LLEGRVPEE-LYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 506 ~l~g~iP~~-l~~~~~~L~~l~l~~N~~lc~ 535 (631)
+|+ .+|.. +..+ .+|+.|++++|++.|.
T Consensus 92 ~l~-~l~~~~~~~l-~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLK-SIPRGAFDNL-KSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCC-CCCTTTTTTC-TTCSEEECCSSCBCTT
T ss_pred ccc-eeCHHHhccc-cCCCEEEeCCCCcccc
Confidence 999 55555 5444 4899999999998884
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.28 E-value=3.3e-13 Score=149.37 Aligned_cols=174 Identities=18% Similarity=0.162 Sum_probs=125.0
Q ss_pred eeeEeecCCceEEEEEcccc-----hhhhhhccccccccCCCCCCch-hHHHHHHH---HHHhcCCCCCCCCCCCCCCCC
Q 006793 335 HYVAKNLSSTELTVKLVPVV-----GAALISGLENYALVPNDLSTVP-EQVIAMRA---LKESLRVPDRMGWNGDPCAPT 405 (631)
Q Consensus 335 ~~~~l~ls~n~L~~~l~~~~-----~~~~Ln~lEi~~l~~~~~~~~p-~~~~~l~~---l~~~~~~~~~~~w~gdpc~~~ 405 (631)
.+..++++++.+++.++... +. +..++...+..+.. .+| ..+..+.. ++... . +.
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~--l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~-l----~~-------- 311 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTS--LKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT-V----SG-------- 311 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCC--CCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE-E----ES--------
T ss_pred cccEEEeecccccCccccchhhccccc--CceeEeccccccce-ecchhhhhcccccCceeEEE-c----CC--------
Confidence 45566777777777777665 33 55666666666655 666 33433311 11100 0 00
Q ss_pred CCCCCcceeecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCC--CCCCcccc-cccccccccccc
Q 006793 406 NWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG--TLPSGLGQ-QSLVRLDLSDNQ 482 (631)
Q Consensus 406 ~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g--~iP~~~~~-~~L~~L~Ls~N~ 482 (631)
+...++.|. ..+..|+.|+|++|.+++.+|..++.+++|+.|+|++|++++ .+|..+.. ++|+.|+|++|+
T Consensus 312 --n~l~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 312 --TRMVHMLCP----SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp --SCCCCCCCC----SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred --Cccccccch----hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 011111111 134568899999999999899999999999999999999996 56677788 999999999999
Q ss_pred CCCCCCcc-CCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 483 FTGSIPDS-LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 483 l~g~iP~~-l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
+++.+|.. +..+++|+.|++++|++++.+|..+. .+|+.|++++|.+.
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP---PRIKVLDLHSNKIK 434 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC---TTCCEEECCSSCCC
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhc---ccCCEEECCCCccc
Confidence 99878875 78889999999999999988887653 47899999999865
No 43
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.28 E-value=1.5e-12 Score=134.62 Aligned_cols=109 Identities=23% Similarity=0.177 Sum_probs=63.1
Q ss_pred eeEEEEEEecCCCCcccCchhhccc-----ccccccccccccCCCCCCCcccc-ccccccccccccCCCC--CCccC--C
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLL-----SNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS--IPDSL--T 492 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l-----~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~--iP~~l--~ 492 (631)
+..|+.|+|++|.+++. |..++.+ ++|++|+|++|++++..|..++. ++|+.|+|++|++.|. +|..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 34566666666666655 5555555 66666666666666555555655 6666666666666554 23333 5
Q ss_pred CCCCCCEEEcccCcCcc--ccchhhhhccCCCCeEeecCCCC
Q 006793 493 SSSKLQLVLLNNNLLEG--RVPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 493 ~l~~L~~L~ls~N~l~g--~iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
.+++|+.|+|++|++++ .++..++....+|+.|++++|.+
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 56666666666666652 33334433334566666666654
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.27 E-value=1.1e-12 Score=148.02 Aligned_cols=109 Identities=16% Similarity=0.071 Sum_probs=93.9
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
.++.|||++|.|++..+..|.++++|++|+|++|+|++..|..+.. ++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 5899999999999887889999999999999999999555556788 999999999999996555678999999999999
Q ss_pred cCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
+|++++..+..+..+. +|+.|++++|.+..
T Consensus 133 ~N~l~~l~~~~~~~L~-~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 133 ETNLASLENFPIGHLK-TLKELNVAHNLIQS 162 (635)
T ss_dssp TSCCCCSTTCCCTTCT-TCCEEECCSSCCCC
T ss_pred CCcCCCCChhhhhcCc-ccCeeccccCcccc
Confidence 9999955444555554 89999999998644
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.27 E-value=3e-12 Score=140.20 Aligned_cols=125 Identities=17% Similarity=0.197 Sum_probs=106.0
Q ss_pred CCcceeecCCCCC-----ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-cccccccccccc
Q 006793 409 AWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQ 482 (631)
Q Consensus 409 ~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~ 482 (631)
.|..+.|...... -...++.|+|++|.+++..+..|.++++|+.|+|++|.+++..|..+.. ++|+.|+|++|+
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 4667888754322 1235889999999999988999999999999999999999878888999 999999999999
Q ss_pred CCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 483 FTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 483 l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
+++..+..|.++++|++|+|++|++++..|..+..+. +|+.|++++|.+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~ 142 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVY 142 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCE
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccce
Confidence 9954445689999999999999999988787776665 89999999998543
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.27 E-value=6e-12 Score=130.92 Aligned_cols=129 Identities=19% Similarity=0.197 Sum_probs=105.7
Q ss_pred CCCCCCCCCCcceeecCCCCCc-----eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-cccc
Q 006793 401 PCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV 474 (631)
Q Consensus 401 pc~~~~~~~w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~ 474 (631)
.|...+.|.|..+.|....... ...++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.. ++|+
T Consensus 24 ~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 24 VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp CCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 4544444789999997543221 235889999999999877779999999999999999999777989998 9999
Q ss_pred ccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 475 RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 475 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
.|+|++|+++ .+|..+. ++|+.|++++|++++..+..+..+ .+|+.|++++|...
T Consensus 104 ~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 104 RLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLK 158 (330)
T ss_dssp EEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCC
T ss_pred EEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCC-ccccEEECCCCcCC
Confidence 9999999999 7888765 799999999999996555555555 48999999999853
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.26 E-value=1.2e-12 Score=135.44 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=69.6
Q ss_pred EEEEEEecCCCCcccCchhh--cccccccccccccccCCCCCCCcccc------ccccccccccccCCCCCCccCCCCCC
Q 006793 425 VISQIDLGSQGLKGYISDKI--SLLSNLVNLNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGSIPDSLTSSSK 496 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~--~~l~~L~~L~Ls~N~l~g~iP~~~~~------~~L~~L~Ls~N~l~g~iP~~l~~l~~ 496 (631)
+|+.|+|++|.+++.+|..+ ..+++|++|+|++|++++. |..+.. ++|+.|+|++|++++..|..++++++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 46677777777777777665 6777777777777777754 654443 46777777777777666667777777
Q ss_pred CCEEEcccCcCcccc--chhh--hhccCCCCeEeecCCCC
Q 006793 497 LQLVLLNNNLLEGRV--PEEL--YSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 497 L~~L~ls~N~l~g~i--P~~l--~~~~~~L~~l~l~~N~~ 532 (631)
|++|++++|++.|.+ |..+ ..+ .+|+.|++++|.+
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~L~~N~l 213 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKF-PTLQVLALRNAGM 213 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSC-TTCCEEECTTSCC
T ss_pred CCEEECCCCCcCcchHHHHHHHhccC-CCCCEEECCCCcC
Confidence 777777777766552 3333 233 3667777777764
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.26 E-value=2.6e-12 Score=145.02 Aligned_cols=113 Identities=20% Similarity=0.250 Sum_probs=102.1
Q ss_pred eeEEEEEEecCCCCc-ccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEE
Q 006793 423 AVVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (631)
+..++.|+|++|.+. +.+|..+..+++|+.|+|++|+|++..|..+.. ++|+.|+|++|+|++..|..|.++++|++|
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 345889999999854 567788999999999999999999888888988 999999999999998888889999999999
Q ss_pred EcccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 501 ~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
+|++|+|++..|..+..+..+|+.|++++|++.|.
T Consensus 548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999999998988887766899999999999993
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.26 E-value=1.1e-12 Score=134.81 Aligned_cols=113 Identities=21% Similarity=0.172 Sum_probs=99.5
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCC-CCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (631)
+.+|+.|+|++|.+.+..+..+..+++|+.|+|++|.+++ .+|..+.. ++|+.|+|++|++++..|..+..+++|+.|
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence 3458899999999999999999999999999999999997 57888888 999999999999998889999999999999
Q ss_pred EcccCcCccccchhhhhccCCCCeEeecCCCCCCCC
Q 006793 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGA 536 (631)
Q Consensus 501 ~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~ 536 (631)
+|++|++++..+..+..+ .+|+.|++++|++....
T Consensus 205 ~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 205 NMSHNNFFSLDTFPYKCL-NSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp ECTTSCCSBCCSGGGTTC-TTCCEEECTTSCCCBCS
T ss_pred ECCCCccCccChhhccCc-ccCCEeECCCCCCcccC
Confidence 999999996655565554 48999999999976543
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.26 E-value=4.7e-12 Score=137.32 Aligned_cols=134 Identities=20% Similarity=0.204 Sum_probs=105.3
Q ss_pred CCCCCCCCCC--CcceeecCCCCCc-----eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-c
Q 006793 400 DPCAPTNWDA--WEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q 471 (631)
Q Consensus 400 dpc~~~~~~~--w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~ 471 (631)
.+|...+.|. |..+.|....... ...++.|+|++|.+++..+..|.++++|+.|+|++|.+++..+..+.. +
T Consensus 33 ~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~ 112 (440)
T 3zyj_A 33 QTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112 (440)
T ss_dssp CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred ccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence 3554443343 5678887543222 235789999999999888899999999999999999999666677888 9
Q ss_pred cccccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 472 SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 472 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
+|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+ .+|+.|++++|..+.
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~l~~~~~l~ 174 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLS 174 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCC
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC-cccCEeCCCCCCCcc
Confidence 99999999999996555579999999999999999994444444444 589999999876544
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.25 E-value=3.7e-12 Score=132.70 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=103.1
Q ss_pred CCCCCCCCCCcceeecCCCCCc-----eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-cccc
Q 006793 401 PCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV 474 (631)
Q Consensus 401 pc~~~~~~~w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~ 474 (631)
.|...+.|.|..+.|....... ...++.|+|++|.+++..|..|.++++|++|+|++|++++..|..+.. ++|+
T Consensus 26 ~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 26 MCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp CCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred CCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 3433334789999997543222 235889999999999888889999999999999999999777888888 9999
Q ss_pred ccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 475 RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 475 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
.|+|++|+++ .+|..+. ++|++|++++|+++ .+|...+....+|+.|++++|++.
T Consensus 106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCB
T ss_pred EEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccc
Confidence 9999999998 7888776 79999999999998 455443333448899999999863
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.24 E-value=8.2e-12 Score=135.90 Aligned_cols=185 Identities=15% Similarity=0.047 Sum_probs=119.5
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+.+|+.|+|++|.+++..+..|.++++|++|+|++|++++..+..+.. ++|+.|+|++|++++..+..+.++++|+.|+
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 445888999999999888888999999999999999999444445776 8999999999999865555788899999999
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCCCCCCCCCCCCCCcc--cCCCCcCCceEEehhhHHHHHHHHHHHHHHHHh
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLFW--ENGGLSKGGKIAIVILSLVLFSGVLLVVYICCI 579 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~p~~~~c~~~~--~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 579 (631)
+++|+..+.+|...+....+|+.|++++|.+.. .|....+..-. ......... +.... +.
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~-~~~~~----------------~~ 239 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPE-IRPGS----------------FH 239 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCSE-ECGGG----------------GT
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCcccc-cccccccccccEEECcCCcCcc-cCccc----------------cc
Confidence 998665557776655444588999999988543 33222221100 111111111 00000 00
Q ss_pred hcCCCCCCCCCchhhhhHHHHhhhhccCCchhhhHHHhhhccCCCCCC
Q 006793 580 RRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLP 627 (631)
Q Consensus 580 ~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ldl~~n~~~~~p~~~ 627 (631)
.-.+.+......+++.. .....|..+.+|+.|||+.|+++++|..-
T Consensus 240 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp TCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred CccCCCEEEeCCCcCce--ECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 01111111111122221 12356788899999999999999998653
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.24 E-value=3.3e-12 Score=132.91 Aligned_cols=103 Identities=25% Similarity=0.330 Sum_probs=50.2
Q ss_pred EEEEEecCCCCc--ccCchhhcccccccccccccccCCCCCCCccccccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 426 ISQIDLGSQGLK--GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 426 l~~L~Ls~n~l~--g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
|+.|+|++|.++ +..+..+..+++|+.|++++|.++ .+|..+. ++|+.|+|++|++++..|..+..+++|+.|+++
T Consensus 147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 445555555553 234444555555555555555555 3444332 445555555555554444555555555555555
Q ss_pred cCcCccccchhhhhccCCCCeEeecCCC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
+|++++..+..+..+. +|+.|++++|+
T Consensus 225 ~n~l~~~~~~~~~~l~-~L~~L~L~~N~ 251 (330)
T 1xku_A 225 FNSISAVDNGSLANTP-HLRELHLNNNK 251 (330)
T ss_dssp SSCCCEECTTTGGGST-TCCEEECCSSC
T ss_pred CCcCceeChhhccCCC-CCCEEECCCCc
Confidence 5555543333333332 45555555554
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.24 E-value=9.9e-12 Score=134.73 Aligned_cols=186 Identities=14% Similarity=0.055 Sum_probs=118.4
Q ss_pred ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEE
Q 006793 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (631)
.+.+|+.|+|++|.+++..+..|.++++|+.|+|++|++++..+..+.. ++|+.|+|++|++++..+..|.++++|+.|
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence 3456888999999998877888999999999999999998433445677 889999999999986555678888999999
Q ss_pred EcccCcCccccchhhhhccCCCCeEeecCCCCCCCCCCCCCCCCcc--cCCCCcCCceEEehhhHHHHHHHHHHHHHHHH
Q 006793 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLFW--ENGGLSKGGKIAIVILSLVLFSGVLLVVYICC 578 (631)
Q Consensus 501 ~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~p~~~~c~~~~--~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~ 578 (631)
++++|+..+.+|...+....+|+.|++++|.+. ..|....+..-. ......... +.... +
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~----------------~ 227 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSA-IRPGS----------------F 227 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCE-ECTTT----------------T
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCc-cChhh----------------h
Confidence 999866555777655444458888999888754 333222221100 111111100 00000 0
Q ss_pred hhcCCCCCCCCCchhhhhHHHHhhhhccCCchhhhHHHhhhccCCCCCC
Q 006793 579 IRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLP 627 (631)
Q Consensus 579 ~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ldl~~n~~~~~p~~~ 627 (631)
..-.+.+......+++..+ ....|.++.+|+.|||++|+++++|..-
T Consensus 228 ~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVI--ERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp TTCTTCCEEECTTCCCCEE--CTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ccCccCCEEECCCCceeEE--ChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 0001111111111222211 2356788899999999999999998643
No 55
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.24 E-value=9e-12 Score=116.96 Aligned_cols=111 Identities=17% Similarity=0.199 Sum_probs=90.3
Q ss_pred CCCCCCCCCcceeecCCCCCc-----eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccc
Q 006793 402 CAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVR 475 (631)
Q Consensus 402 c~~~~~~~w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~ 475 (631)
|.....|.|+.+.|....... ...++.|+|++|.|++..|..|.++++|++|+|++|+|++..|..+.. ++|+.
T Consensus 3 CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 3 CPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp CC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 333334788999997654322 245889999999999988999999999999999999999444444567 99999
Q ss_pred cccccccCCCCCCccCCCCCCCCEEEcccCcCccccc
Q 006793 476 LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVP 512 (631)
Q Consensus 476 L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP 512 (631)
|+|++|+|++..|..|..+++|+.|+|++|.+++..+
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999997555679999999999999999986544
No 56
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.23 E-value=6.4e-12 Score=136.45 Aligned_cols=115 Identities=24% Similarity=0.263 Sum_probs=91.8
Q ss_pred ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEE
Q 006793 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (631)
.+.+|+.|+|++|.+++..|..|.++++|+.|+|++|.+++..|..+.. ++|+.|+|++|++++..|..+..+++|++|
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 3456888888888888888888888888888888888888666777777 888888888888888778888888888888
Q ss_pred EcccCcCccccchhhhhccCCCCeEeecCCCCCCCCC
Q 006793 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAP 537 (631)
Q Consensus 501 ~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~p 537 (631)
+|++|++++ +|...+...++|+.|++++|++.|..|
T Consensus 377 ~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 377 ALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCcccc-CCHhHhccCCcccEEEccCCCcccCCC
Confidence 888888884 555443333478888888888888543
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.23 E-value=1.3e-12 Score=146.02 Aligned_cols=113 Identities=22% Similarity=0.203 Sum_probs=101.4
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCC-CCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG-GTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~-g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (631)
+.+|+.|+|++|.+.+.+|..+.++++|+.|+|++|.++ +.+|..+.. ++|+.|+|++|++++..|..+..+++|+.|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 456889999999999999999999999999999999998 679998988 999999999999998889999999999999
Q ss_pred EcccCcCccccchhhhhccCCCCeEeecCCCCCCCC
Q 006793 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGA 536 (631)
Q Consensus 501 ~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~ 536 (631)
++++|++++..|..+..+. +|+.+++++|++.|..
T Consensus 500 ~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSC 534 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCT
T ss_pred eCCCCcCCCCCHHHhhccc-CCcEEEecCCcccCCC
Confidence 9999999977666665554 8999999999998854
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.23 E-value=8.9e-12 Score=142.55 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=104.0
Q ss_pred CCCcceeecCCCCCc-----eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccc
Q 006793 408 DAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN 481 (631)
Q Consensus 408 ~~w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N 481 (631)
|.+..+.|....... ..+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.. ++|+.|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 345556665432211 236899999999999888888999999999999999999888888888 99999999999
Q ss_pred cCCCCCCc-cCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 482 QFTGSIPD-SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 482 ~l~g~iP~-~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
++++ +|. .|+++++|++|++++|++++..|..+..+. +|+.|++++|.+...
T Consensus 84 ~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~ 136 (680)
T 1ziw_A 84 ELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK-NLITLDLSHNGLSST 136 (680)
T ss_dssp CCCC-CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT-TCCEEECCSSCCSCC
T ss_pred ccCc-cChhhhccCCCCCEEECCCCccCccChhHccccC-CCCEEECCCCccccc
Confidence 9995 555 699999999999999999966666676665 899999999986543
No 59
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1.1e-11 Score=129.95 Aligned_cols=92 Identities=21% Similarity=0.175 Sum_probs=48.5
Q ss_pred Cchhhccccccccccccc-ccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhh
Q 006793 440 ISDKISLLSNLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYS 517 (631)
Q Consensus 440 ~p~~~~~l~~L~~L~Ls~-N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~ 517 (631)
+|. |..+++|+.|+|++ |+|++..|..+.. ++|+.|+|++|+|++..|..|.+|++|+.|+|++|+|+ .+|..++.
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcc
Confidence 444 55555555555553 5555333344544 55555555555555555555555555555555555555 33333333
Q ss_pred ccCCCCeEeecCCCCCC
Q 006793 518 IGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 518 ~~~~L~~l~l~~N~~lc 534 (631)
.. .|+.|++.+|++.|
T Consensus 102 ~~-~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 102 GL-SLQELVLSGNPLHC 117 (347)
T ss_dssp SC-CCCEEECCSSCCCC
T ss_pred cC-CceEEEeeCCCccC
Confidence 32 25555555555555
No 60
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.23 E-value=7.7e-13 Score=144.88 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=74.7
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
.+|+.|+|++|.+.+..+..|..+++|+.|+|++|.+++..|..+.. ++|+.|+|++|++++..+..+.++++|+.|++
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 34667777777777766777777777777777777777666666666 77777777777777544445677777777777
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
++|.+++..+..+..+. +|+.|++++|+.+.
T Consensus 184 ~~n~i~~~~~~~~~~l~-~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLY-RLKVLEISHWPYLD 214 (477)
T ss_dssp ESCCCCEECTTCSCSCT-TCCEEEEECCTTCC
T ss_pred CCCcCcEeChhhcccCc-ccceeeCCCCcccc
Confidence 77777755444444443 67777777766544
No 61
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=1.9e-11 Score=140.84 Aligned_cols=107 Identities=28% Similarity=0.341 Sum_probs=96.8
Q ss_pred ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEE
Q 006793 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (631)
.+..|+.|+|++|.+. .+|..+..|++|+.|+|++|.|+ .+|..++. ++|+.|+|++|+|+ .+|..|++|++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 3456889999999998 78888889999999999999999 99999988 99999999999999 899999999999999
Q ss_pred EcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 501 ~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
+|++|.|+ .+|..+..+. +|+.|+|++|++.
T Consensus 299 ~L~~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 299 YFFDNMVT-TLPWEFGNLC-NLQFLGVEGNPLE 329 (727)
T ss_dssp ECCSSCCC-CCCSSTTSCT-TCCCEECTTSCCC
T ss_pred ECCCCCCC-ccChhhhcCC-CccEEeCCCCccC
Confidence 99999997 8898877765 8999999999854
No 62
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.22 E-value=8.2e-12 Score=140.79 Aligned_cols=124 Identities=14% Similarity=0.034 Sum_probs=104.6
Q ss_pred CcceeecCCCCCc-----eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccC
Q 006793 410 WEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF 483 (631)
Q Consensus 410 w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l 483 (631)
+..+.|....... ...++.|+|++|.+++..|..|.++++|++|+|++|++++..|..+.. ++|+.|+|++|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 4456675433211 235899999999999888999999999999999999999878888999 9999999999999
Q ss_pred CCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 484 TGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 484 ~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
++..|..|+++++|++|++++|++++..|..+..+. +|+.|++++|.+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~-~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK-TLESLYLGSNHISS 143 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT-TCCEEECCSSCCCC
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCC-cccEEECCCCcccc
Confidence 988899999999999999999999965566666554 89999999998655
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.22 E-value=5.8e-12 Score=142.01 Aligned_cols=110 Identities=19% Similarity=0.093 Sum_probs=99.2
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
..++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.. ++|+.|+|++|++++..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 46899999999999888889999999999999999999777888888 99999999999999888999999999999999
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
++|++++..|..+..+. +|+.|++++|.+..
T Consensus 112 ~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~ 142 (606)
T 3vq2_A 112 VETKLASLESFPIGQLI-TLKKLNVAHNFIHS 142 (606)
T ss_dssp TTSCCCCSSSSCCTTCT-TCCEEECCSSCCCC
T ss_pred cCCccccccccccCCCC-CCCEEeCCCCcccc
Confidence 99999966667776665 89999999998653
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.21 E-value=3.8e-12 Score=128.94 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=91.9
Q ss_pred eeEEEEEEecCCCCcc-cCchhhcccccccccccccccCCCCCCCcccc-cccc----ccccccccCCCCCCccCCCCCC
Q 006793 423 AVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV----RLDLSDNQFTGSIPDSLTSSSK 496 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~----~L~Ls~N~l~g~iP~~l~~l~~ 496 (631)
+..|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++..+..+.. .+|+ .|++++|++++ +|.......+
T Consensus 123 l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~~~ 201 (276)
T 2z62_A 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIR 201 (276)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSSCSCC
T ss_pred CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc-cCccccCCCc
Confidence 4568999999999987 47999999999999999999999666667777 7777 88999999995 5555545568
Q ss_pred CCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCCCC
Q 006793 497 LQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGA 536 (631)
Q Consensus 497 L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~ 536 (631)
|+.|++++|+++ .+|..++....+|+.|++++|++.|..
T Consensus 202 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 202 LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccC
Confidence 999999999999 556555444458999999999999854
No 65
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=1.6e-11 Score=120.21 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=102.4
Q ss_pred ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEE
Q 006793 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (631)
.+.+|+.|+|++|.|++..+..|.++++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..|..+++|+.|
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 4567999999999999888889999999999999999999666666777 999999999999999889999999999999
Q ss_pred EcccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 501 ~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
+|++|++++..|..+..+. +|+.|++++|++.|.
T Consensus 135 ~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 135 SLYDNQITTVAPGAFDTLH-SLSTLNLLANPFNCN 168 (220)
T ss_dssp ECTTSCCCCBCTTTTTTCT-TCCEEECCSCCEECS
T ss_pred ECCCCcCCEECHHHhcCCC-CCCEEEecCcCCcCC
Confidence 9999999987788877665 899999999999884
No 66
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=6.3e-12 Score=114.91 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=88.5
Q ss_pred EEEEEEecCCCCc-ccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 425 VISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 425 ~l~~L~Ls~n~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
+++.|++++|.++ +.+|..+..+++|+.|+|++|.+++. ..+.. ++|+.|+|++|++++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4788999999998 88888889999999999999999854 66777 89999999999999878888888999999999
Q ss_pred ccCcCccc-cchhhhhccCCCCeEeecCCCC
Q 006793 503 NNNLLEGR-VPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 503 s~N~l~g~-iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
++|++++. .|..+..+. +|+.|++++|++
T Consensus 96 s~N~i~~~~~~~~~~~l~-~L~~L~l~~N~l 125 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLE-NLKSLDLFNCEV 125 (149)
T ss_dssp TTSCCCSHHHHGGGGGCT-TCCEEECTTCGG
T ss_pred CCCcCCChHHHHHHhhCC-CCCEEeCcCCcc
Confidence 99999863 346666554 789999999874
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.20 E-value=4.1e-12 Score=133.53 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=90.0
Q ss_pred CceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc--ccccccccccccCCCC------------
Q 006793 421 ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGS------------ 486 (631)
Q Consensus 421 ~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~--~~L~~L~Ls~N~l~g~------------ 486 (631)
..+..|+.|++++|.+++..|..+..+++|+.|+|++|.++ .+|..+.. ++|+.|+|++|++++.
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccc
Confidence 34668999999999999888889999999999999999986 66665443 8899999999998864
Q ss_pred -------------------CCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 487 -------------------IPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 487 -------------------iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
+|..+..+++|+.|++++|+++ .+|..++...++|+.|++++|++.|.
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 3344567788888888888888 77877644445788888888888774
No 68
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=1.2e-11 Score=118.43 Aligned_cols=113 Identities=21% Similarity=0.271 Sum_probs=92.9
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+.+|+.|+|++|.|++..|..|.++++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 345899999999999999999999999999999999999777777888 9999999999999999999999999999999
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCCCCCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAP 537 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~p 537 (631)
|++|.+++..+...... .++...+.++...|..|
T Consensus 133 L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCCC
Confidence 99999998877433211 11222344455566554
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.19 E-value=4.3e-12 Score=133.36 Aligned_cols=124 Identities=20% Similarity=0.246 Sum_probs=99.4
Q ss_pred CCCcceeecCCC--CC-----ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccc
Q 006793 408 DAWEGITCHPNK--DE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLS 479 (631)
Q Consensus 408 ~~w~gv~c~~~~--~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls 479 (631)
|.|.|+ |+... .. -...|+.|+|++|.+++..+..+.++++|+.|+|++|++++..|..+.. ++|+.|+|+
T Consensus 30 C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 30 CDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp ECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 678886 54321 11 1236899999999999877778999999999999999999777777888 999999999
Q ss_pred cccCCCCCCcc-CCCCCCCCEEEcccCcCccccch-hhhhccCCCCeEeecCCCCCC
Q 006793 480 DNQFTGSIPDS-LTSSSKLQLVLLNNNLLEGRVPE-ELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 480 ~N~l~g~iP~~-l~~l~~L~~L~ls~N~l~g~iP~-~l~~~~~~L~~l~l~~N~~lc 534 (631)
+|++++ +|.. +.++++|++|++++|+++ .+|. ..+....+|+.|++++|....
T Consensus 109 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 109 YNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp SSCCSS-CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred CCcCCc-CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcccc
Confidence 999995 5554 899999999999999999 5666 333334589999999986343
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.19 E-value=2e-11 Score=127.02 Aligned_cols=106 Identities=22% Similarity=0.249 Sum_probs=81.5
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCccccccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
+.+|+.|+|++|.+++..|..+.++++|++|+|++|.++ .+|..+. ++|+.|++++|++++..+..+.++++|+.|++
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 345888999999998888888999999999999999988 7887665 78889999999888554556888888999999
Q ss_pred ccCcCc--cccchhhhhccCCCCeEeecCCCC
Q 006793 503 NNNLLE--GRVPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 503 s~N~l~--g~iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
++|.++ +..|..+..+ +|+.|++++|.+
T Consensus 155 ~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l 184 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGL--KLNYLRISEAKL 184 (332)
T ss_dssp CSCCCBGGGSCTTSSCSC--CCSCCBCCSSBC
T ss_pred CCCccccCCCCcccccCC--ccCEEECcCCCC
Confidence 888885 3445444433 566666666653
No 71
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=9.8e-12 Score=119.46 Aligned_cols=107 Identities=15% Similarity=0.219 Sum_probs=92.6
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+..|+.|++++|.++ .+| .+..+++|+.|++++|.++ . ++.+.. ++|+.|++++|++++..|..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 345889999999998 666 6999999999999999776 3 446777 9999999999999988899999999999999
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
+++|++++..|..+..+. +|+.|++++|+...
T Consensus 119 Ls~n~i~~~~~~~l~~l~-~L~~L~L~~n~~i~ 150 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLP-KVNSIDLSYNGAIT 150 (197)
T ss_dssp CCSSBCBGGGHHHHTTCS-SCCEEECCSCTBCC
T ss_pred ecCCccCcHhHHHHhhCC-CCCEEEccCCCCcc
Confidence 999999988888887765 89999999997444
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.17 E-value=2.8e-12 Score=134.76 Aligned_cols=127 Identities=13% Similarity=0.087 Sum_probs=96.6
Q ss_pred CCCCcceeecCCCCCc-----eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcc-cc-cccc-cccc
Q 006793 407 WDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLV-RLDL 478 (631)
Q Consensus 407 ~~~w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~-~~-~~L~-~L~L 478 (631)
.|.|..+.|....... ...++.|+|++|+|+...+..|.+|++|++|+|++|++.+.+|... .. ++|+ .+.+
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 3788889997543222 2358999999999996555679999999999999999987888754 45 6655 5777
Q ss_pred ccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 479 SDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 479 s~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
+.|+++...|..|..+++|++|++++|++++..+..+.... ++..+++.++..+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL-QKVLLDIQDNINIH 142 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS-SCEEEEEESCTTCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccc-hhhhhhhccccccc
Confidence 88999976788899999999999999999855444443333 56678887654343
No 73
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=5.4e-11 Score=112.08 Aligned_cols=109 Identities=19% Similarity=0.286 Sum_probs=87.7
Q ss_pred CCCCCCCCCCcceeecCCCCCc-----eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCc-ccc-ccc
Q 006793 401 PCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSL 473 (631)
Q Consensus 401 pc~~~~~~~w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~-~~L 473 (631)
.|.....|....+.|....... ...|+.|+|++|.|++..|..|.++++|+.|+|++|+|++ +|.. +.. ++|
T Consensus 5 ~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L 83 (174)
T 2r9u_A 5 GCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQL 83 (174)
T ss_dssp SSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchh
Confidence 4544444666667776543322 2458899999999999889999999999999999999994 6665 566 999
Q ss_pred cccccccccCCCCCCccCCCCCCCCEEEcccCcCccc
Q 006793 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGR 510 (631)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~ 510 (631)
+.|+|++|+|++..+..|..+++|+.|+|++|.+...
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999999999964444599999999999999999843
No 74
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=2.6e-11 Score=135.63 Aligned_cols=103 Identities=27% Similarity=0.340 Sum_probs=94.6
Q ss_pred EEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEccc
Q 006793 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~ 504 (631)
|+.|+|++|.|++ +|. ++.|++|+.|+|++|.|+ .+|..++. ++|+.|+|++|+|++ +| .++++++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 7789999999996 676 999999999999999999 99999999 999999999999996 88 899999999999999
Q ss_pred CcCcccc-chhhhhccCCCCeEeecCCCCCC
Q 006793 505 NLLEGRV-PEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 505 N~l~g~i-P~~l~~~~~~L~~l~l~~N~~lc 534 (631)
|+|++.. |..+..+. +|+.|++++|++..
T Consensus 518 N~l~~~~~p~~l~~l~-~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQ 547 (567)
T ss_dssp SCCCSSSTTGGGGGCT-TCCEEECTTSGGGG
T ss_pred CCCCCCCCcHHHhcCC-CCCEEEecCCcCCC
Confidence 9999877 88888876 89999999999543
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.16 E-value=1.4e-11 Score=136.32 Aligned_cols=109 Identities=25% Similarity=0.287 Sum_probs=85.7
Q ss_pred eEEEEEEecCCCCcccCchh-hcccccccccccccccCCCCCCCccccccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDK-ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~-~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
.+|+.|+|++|.+++.+|.. +..+++|+.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNV 451 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-ccCCEEECCCCccc-ccchhhhcCCCCCEEEC
Confidence 34778888888888766664 77788888888888888877776554 67888888888888 78888888888888888
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
++|+++ .+|...+....+|+.+++++|++.|.
T Consensus 452 ~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 452 ASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 888888 67776333334788888888888773
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.16 E-value=1.9e-11 Score=126.04 Aligned_cols=110 Identities=23% Similarity=0.161 Sum_probs=63.5
Q ss_pred eeEEEEEEecCCCCcccCc----hhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCC--C--CccCCC
Q 006793 423 AVVISQIDLGSQGLKGYIS----DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS--I--PDSLTS 493 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p----~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~--i--P~~l~~ 493 (631)
+..|+.|+|++|.+++..+ ..+..+++|++|+|++|++++..|..+.. ++|+.|+|++|++.+. + +..++.
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 3456666677776665444 23445666677777777766555555656 6677777777766542 2 222355
Q ss_pred CCCCCEEEcccCcCccccch---hhhhccCCCCeEeecCCCCC
Q 006793 494 SSKLQLVLLNNNLLEGRVPE---ELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 494 l~~L~~L~ls~N~l~g~iP~---~l~~~~~~L~~l~l~~N~~l 533 (631)
+++|++|+|++|+++ .+|. .+.....+|+.|++++|.+.
T Consensus 196 l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 196 FPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp SCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred CCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 666677777777665 2222 23223336667777776643
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.16 E-value=5.3e-11 Score=120.35 Aligned_cols=110 Identities=18% Similarity=0.147 Sum_probs=89.4
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
.+|+.|+|++|.+++..+..+..+++|++|+|++|++++..|..+.. ++|+.|+|++|++++..|..++.+++|+.|++
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 45888999999999877777899999999999999999655555777 89999999999999766666788999999999
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
++|++++..|..+..+ .+|+.|++++|++..
T Consensus 165 ~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKL-TQLKDLRLYQNQLKS 195 (272)
T ss_dssp CSSCCCCCCTTTTTTC-TTCCEEECCSSCCSC
T ss_pred CCCCcCccCHHHhcCC-ccCCEEECCCCcCCc
Confidence 9999985555444444 488999999998554
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.14 E-value=2.5e-11 Score=142.49 Aligned_cols=110 Identities=18% Similarity=0.126 Sum_probs=97.9
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCC-CCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTL-PSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i-P~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
..++.|+|++|.+++..|..|.++++|++|+|++|.+.+.+ |..+.. ++|+.|+|++|++++..|..|+++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 35889999999999999999999999999999999888788 667888 9999999999999988899999999999999
Q ss_pred cccCcCccccchh--hhhccCCCCeEeecCCCCCC
Q 006793 502 LNNNLLEGRVPEE--LYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 502 ls~N~l~g~iP~~--l~~~~~~L~~l~l~~N~~lc 534 (631)
|++|.+++.+|.. +..+ .+|+.|++++|.+..
T Consensus 104 Ls~n~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNL-KALTRLDLSKNQIRS 137 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSC-SSCCEEEEESCCCCC
T ss_pred CcCCCCCcccccCcccccc-CCCCEEECCCCcccc
Confidence 9999999877765 5555 489999999998654
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.14 E-value=9.2e-12 Score=123.30 Aligned_cols=106 Identities=19% Similarity=0.248 Sum_probs=89.9
Q ss_pred EEEEEEecCCCCcccCchhhccccccccccccccc-CCCCCCC-cccc-cccccccccc-ccCCCCCCccCCCCCCCCEE
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPS-GLGQ-QSLVRLDLSD-NQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~-l~g~iP~-~~~~-~~L~~L~Ls~-N~l~g~iP~~l~~l~~L~~L 500 (631)
.++.|+|++|.+++..+..|.++++|+.|+|++|. ++ .+|+ .+.. ++|+.|+|++ |++++..|..|.++++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 58899999999998777799999999999999997 88 5554 6777 9999999999 99996556788999999999
Q ss_pred EcccCcCccccchhhhhccCCCC---eEeecCCCCCC
Q 006793 501 LLNNNLLEGRVPEELYSIGVHGG---AFDLSGNKGLC 534 (631)
Q Consensus 501 ~ls~N~l~g~iP~~l~~~~~~L~---~l~l~~N~~lc 534 (631)
++++|++++ +|. +..+. +|+ .|++++|+.+.
T Consensus 111 ~l~~n~l~~-lp~-~~~l~-~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVY-STDIFFILEITDNPYMT 144 (239)
T ss_dssp EEEEECCCS-CCC-CTTCC-BCCSEEEEEEESCTTCC
T ss_pred eCCCCCCcc-ccc-ccccc-ccccccEEECCCCcchh
Confidence 999999995 886 54444 677 99999993343
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.14 E-value=1.8e-11 Score=137.01 Aligned_cols=109 Identities=26% Similarity=0.314 Sum_probs=92.1
Q ss_pred eeEEEEEEecCCCCcccCch-hhcccccccccccccccCCCCCCCccccccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISD-KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+..|+.|+|++|.+++.+|. .+..+++|+.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|+.|+
T Consensus 402 l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~ 479 (562)
T 3a79_B 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SIPKDVTHLQALQELN 479 (562)
T ss_dssp CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC-CCCTTTTSSCCCSEEE
T ss_pred CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc-ccChhhcCCCCCCEEE
Confidence 34588899999999986666 488889999999999999988777655 68999999999998 7999888999999999
Q ss_pred cccCcCccccchh-hhhccCCCCeEeecCCCCCCC
Q 006793 502 LNNNLLEGRVPEE-LYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 502 ls~N~l~g~iP~~-l~~~~~~L~~l~l~~N~~lc~ 535 (631)
|++|+++ .+|.. +..+ ++|+.+++++|++.|.
T Consensus 480 L~~N~l~-~l~~~~~~~l-~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 480 VASNQLK-SVPDGVFDRL-TSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCSSCCC-CCCTTSTTTC-TTCCCEECCSCCBCCC
T ss_pred CCCCCCC-CCCHHHHhcC-CCCCEEEecCCCcCCC
Confidence 9999999 78877 4444 4889999999998884
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.13 E-value=2.1e-11 Score=135.62 Aligned_cols=107 Identities=18% Similarity=0.163 Sum_probs=78.6
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
.|+.|+|++|.+++..|..|.++++|++|+|++|++++..|..+.. ++|++|+|++|++++..|..++++++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 5778888888888777777888888888888888888666667777 778888888888876555557777888888888
Q ss_pred cCcCcc-ccchhhhhccCCCCeEeecCCCC
Q 006793 504 NNLLEG-RVPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 504 ~N~l~g-~iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
+|++++ .+|..+..+. +|+.|++++|..
T Consensus 107 ~n~l~~~~~~~~~~~l~-~L~~L~L~~n~~ 135 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLT-NLQTLRIGNVET 135 (549)
T ss_dssp TCCCSSSCSSCSCTTCT-TCCEEEEEESSS
T ss_pred CCcccccchhhhhhccC-CccEEECCCCcc
Confidence 887775 3455554443 667777777653
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.13 E-value=1.3e-11 Score=122.21 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=87.8
Q ss_pred eEEEEEEecCCC-CcccCchhhccccccccccccc-ccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCC--
Q 006793 424 VVISQIDLGSQG-LKGYISDKISLLSNLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ-- 498 (631)
Q Consensus 424 ~~l~~L~Ls~n~-l~g~~p~~~~~l~~L~~L~Ls~-N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~-- 498 (631)
.+|+.|+|++|. +++..+..|.++++|++|+|++ |++++..+..+.. ++|+.|+|++|++++ +|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence 458899999997 8866666899999999999998 9999544456777 999999999999996 887 88889998
Q ss_pred -EEEcccC-cCccccchhhhhccCCCC-eEeecCCCCC
Q 006793 499 -LVLLNNN-LLEGRVPEELYSIGVHGG-AFDLSGNKGL 533 (631)
Q Consensus 499 -~L~ls~N-~l~g~iP~~l~~~~~~L~-~l~l~~N~~l 533 (631)
.|++++| ++++..+..+..+ .+|+ .+++++|.+.
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l-~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGL-CNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTT-BSSEEEEECCSCCCC
T ss_pred cEEECCCCcchhhcCcccccch-hcceeEEEcCCCCCc
Confidence 9999999 8884444445444 4889 9999999854
No 83
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.13 E-value=1.5e-11 Score=144.46 Aligned_cols=107 Identities=25% Similarity=0.311 Sum_probs=88.4
Q ss_pred eEEEEEEecCCCCc-----ccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCC
Q 006793 424 VVISQIDLGSQGLK-----GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKL 497 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~-----g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L 497 (631)
..|+.|+|++|.++ +..+..|..+++|+.|+|++|++++..|..+.. ++|+.|+|++|+|++..|..+. ++|
T Consensus 451 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L 528 (844)
T 3j0a_A 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANL 528 (844)
T ss_dssp TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCC
T ss_pred CccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccc
Confidence 35778888888886 445567888999999999999999777777778 9999999999999975555554 899
Q ss_pred CEEEcccCcCccccchhhhhccCCCCeEeecCCCCCCCC
Q 006793 498 QLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGA 536 (631)
Q Consensus 498 ~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~ 536 (631)
+.|+|++|++++.+|..+. +|+.+++++|++.|.+
T Consensus 529 ~~L~Ls~N~l~~~~~~~~~----~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 529 EILDISRNQLLAPNPDVFV----SLSVLDITHNKFICEC 563 (844)
T ss_dssp CEEEEEEECCCCCCSCCCS----SCCEEEEEEECCCCSS
T ss_pred cEEECCCCcCCCCChhHhC----CcCEEEecCCCccccc
Confidence 9999999999988887643 6789999999999954
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.13 E-value=1.4e-11 Score=137.85 Aligned_cols=108 Identities=21% Similarity=0.209 Sum_probs=94.0
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCC--CCCCcccc-ccccccccccccCCCCCCcc-CCCCCCCC
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG--TLPSGLGQ-QSLVRLDLSDNQFTGSIPDS-LTSSSKLQ 498 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g--~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~ 498 (631)
+..|+.|+|++|.+++.+|..+.++++|+.|+|++|++++ .+|..+.. ++|+.|+|++|++++.+|.. +..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 4568999999999999999999999999999999999995 23456777 99999999999999878875 78899999
Q ss_pred EEEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 499 LVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 499 ~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
.|++++|++++.+|..+. .+|+.|++++|.+.
T Consensus 432 ~L~l~~n~l~~~~~~~l~---~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIM 463 (562)
T ss_dssp EEECCSSCCCGGGGSSCC---TTCSEEECCSSCCC
T ss_pred EEECCCCCCCcchhhhhc---CcCCEEECCCCcCc
Confidence 999999999988887653 47899999999865
No 85
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=4.5e-11 Score=126.15 Aligned_cols=109 Identities=27% Similarity=0.270 Sum_probs=57.4
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccC----CCCCCC
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL----TSSSKL 497 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l----~~l~~L 497 (631)
+.+|+.|+|++|.|++..+..|..+++|+.|+|++|++++..|..+.. ++|+.|+|++|+|++ +|..+ ..+++|
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKL 165 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTC
T ss_pred CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcC
Confidence 344555666666665544445555666666666666665444555555 556666666666653 44432 345566
Q ss_pred CEEEcccCcCccccc-hhhhhccCC--CCeEeecCCCCCC
Q 006793 498 QLVLLNNNLLEGRVP-EELYSIGVH--GGAFDLSGNKGLC 534 (631)
Q Consensus 498 ~~L~ls~N~l~g~iP-~~l~~~~~~--L~~l~l~~N~~lc 534 (631)
+.|+|++|+|+ .+| ..+..+. . ++.|++++|++.|
T Consensus 166 ~~L~L~~N~l~-~l~~~~~~~l~-~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 166 MLLDLSSNKLK-KLPLTDLQKLP-AWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CEEECCSSCCC-CCCHHHHHHSC-HHHHTTEECCSSCEEC
T ss_pred CEEECCCCCCC-ccCHHHhhhcc-HhhcceEEecCCCccC
Confidence 66666666665 333 2233222 1 2455666666655
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.11 E-value=4.5e-11 Score=136.71 Aligned_cols=113 Identities=19% Similarity=0.160 Sum_probs=89.3
Q ss_pred ceeEEEEEEecCCCCcccCc--------hhhcccccccccccccccCCCCCCCc-ccc-ccccccccccccCCCCCCccC
Q 006793 422 TAVVISQIDLGSQGLKGYIS--------DKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSL 491 (631)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~~p--------~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~-~~L~~L~Ls~N~l~g~iP~~l 491 (631)
.+..|+.|+|++|.+++..+ ..+.++++|+.|+|++|+++ .+|.. +.. ++|+.|+|++|++++..|..|
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 34567888888888875321 23788889999999999998 77764 666 899999999999996444557
Q ss_pred CCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 492 ~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
.++++|+.|+|++|++++..|..+.....+|+.+++++|++.|.
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 88999999999999999766665552334889999999999995
No 87
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.11 E-value=8.1e-11 Score=132.71 Aligned_cols=111 Identities=12% Similarity=0.121 Sum_probs=91.0
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+..++.|++++|.+....+..+..+++|+.|+|++|.+++..|..+.. ++|+.|+|++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 345788899999988666667888999999999999999777778888 8999999999999987777789999999999
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
|++|.++ .+|..++....+|+.|++++|.+..
T Consensus 130 L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred eeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC
Confidence 9999998 5666654444588999999998654
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.11 E-value=4.7e-11 Score=131.28 Aligned_cols=109 Identities=24% Similarity=0.241 Sum_probs=86.3
Q ss_pred eeEEEEEEecCCCCcccCchhhc-ccccccccccccccCCCCCCCccccccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g~iP~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+..|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++. |.....++|+.|+|++|++++ +|+.+..+++|+.|+
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEE
Confidence 45688889999988888887776 788889999999988854 443323889999999999985 666688888999999
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
|++|.+++ +|..+..+. +|+.|++++|++.|+
T Consensus 221 Ls~N~l~~-lp~~l~~l~-~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 221 LRNNKLVL-IEKALRFSQ-NLEHFDLRGNGFHCG 252 (487)
T ss_dssp CTTSCCCE-ECTTCCCCT-TCCEEECTTCCBCHH
T ss_pred ecCCcCcc-cchhhccCC-CCCEEEcCCCCCcCc
Confidence 99999984 777765554 788999999998874
No 89
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=5.1e-11 Score=111.12 Aligned_cols=107 Identities=21% Similarity=0.182 Sum_probs=91.8
Q ss_pred ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCC--ccCCCCCCCC
Q 006793 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP--DSLTSSSKLQ 498 (631)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~ 498 (631)
.+.+|+.|+|++|.+++. ..+..+++|+.|+|++|.+++.+|..+.. ++|+.|+|++|++++ +| ..+..+++|+
T Consensus 47 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLK 123 (168)
T ss_dssp GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCC
T ss_pred hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCC
Confidence 456799999999999976 78999999999999999999778888877 999999999999995 54 7899999999
Q ss_pred EEEcccCcCccccc---hhhhhccCCCCeEeecCCCC
Q 006793 499 LVLLNNNLLEGRVP---EELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 499 ~L~ls~N~l~g~iP---~~l~~~~~~L~~l~l~~N~~ 532 (631)
.|++++|.+++..+ ..+..+ ++|+.|++++|..
T Consensus 124 ~L~l~~N~l~~~~~~~~~~~~~l-~~L~~L~l~~n~~ 159 (168)
T 2ell_A 124 SLDLFNCEVTNLNDYRESVFKLL-PQLTYLDGYDRED 159 (168)
T ss_dssp EEECCSSGGGTSTTHHHHHHTTC-SSCCEETTEETTS
T ss_pred EEEeeCCcCcchHHHHHHHHHhC-ccCcEecCCCCCh
Confidence 99999999995544 244444 5899999999874
No 90
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.10 E-value=2.4e-11 Score=111.00 Aligned_cols=105 Identities=19% Similarity=0.152 Sum_probs=88.7
Q ss_pred ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCC-CCccCCCCCCCCE
Q 006793 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS-IPDSLTSSSKLQL 499 (631)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~ 499 (631)
.+.+|+.|+|++|.+++. ..+..+++|+.|+|++|.+++.+|..+.. ++|+.|++++|++++. .|..++.+++|+.
T Consensus 40 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 345689999999999976 78999999999999999999878888877 9999999999999962 4488999999999
Q ss_pred EEcccCcCccccc---hhhhhccCCCCeEeecC
Q 006793 500 VLLNNNLLEGRVP---EELYSIGVHGGAFDLSG 529 (631)
Q Consensus 500 L~ls~N~l~g~iP---~~l~~~~~~L~~l~l~~ 529 (631)
|++++|++++..+ ..+..+ ++|+.|++++
T Consensus 118 L~l~~N~l~~~~~~~~~~~~~l-~~L~~L~l~d 149 (149)
T 2je0_A 118 LDLFNCEVTNLNDYRENVFKLL-PQLTYLDGYD 149 (149)
T ss_dssp EECTTCGGGGSTTHHHHHHHHC-TTCCEETTBC
T ss_pred EeCcCCcccchHHHHHHHHHHC-CCcccccCCC
Confidence 9999999996554 344444 4888888753
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.09 E-value=4.1e-11 Score=123.58 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=90.2
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCC--CCCc--ccc-ccccccccccccCCCCCCcc----CCC
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT--LPSG--LGQ-QSLVRLDLSDNQFTGSIPDS----LTS 493 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~--iP~~--~~~-~~L~~L~Ls~N~l~g~iP~~----l~~ 493 (631)
+.+|+.|+|++|.+.+..+..++.+++|++|+|++|++.+. ++.. +.. ++|+.|+|++|+++ .+|.. ++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 45789999999999988888999999999999999998753 3322 345 88999999999997 34442 467
Q ss_pred CCCCCEEEcccCcCccccchhhhhcc--CCCCeEeecCCCCC
Q 006793 494 SSKLQLVLLNNNLLEGRVPEELYSIG--VHGGAFDLSGNKGL 533 (631)
Q Consensus 494 l~~L~~L~ls~N~l~g~iP~~l~~~~--~~L~~l~l~~N~~l 533 (631)
+++|++|+|++|++++.+|..+..+. ++|+.|++++|.+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 89999999999999988888877663 58899999999865
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.08 E-value=4.3e-11 Score=114.96 Aligned_cols=103 Identities=12% Similarity=0.118 Sum_probs=68.5
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
.|+.|+|++|.+++..+..+..+++|++|+|++|++++..|..+.. ++|+.|+|++|++.+.+| .+..+++|+.|+++
T Consensus 89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence 4667777777777666667777777777777777777666666666 777777777776333565 56677777777777
Q ss_pred cCcCccccchhhhhccCCCCeEeecCCC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
+|++++ ++ .+..+. +|+.|++++|+
T Consensus 168 ~n~i~~-~~-~l~~l~-~L~~L~l~~N~ 192 (197)
T 4ezg_A 168 FDGVHD-YR-GIEDFP-KLNQLYAFSQT 192 (197)
T ss_dssp TBCCCC-CT-TGGGCS-SCCEEEECBC-
T ss_pred CCCCcC-hH-HhccCC-CCCEEEeeCcc
Confidence 777763 33 344443 66777777776
No 93
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.07 E-value=2.3e-10 Score=109.63 Aligned_cols=103 Identities=22% Similarity=0.338 Sum_probs=90.0
Q ss_pred EEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcccC
Q 006793 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505 (631)
Q Consensus 427 ~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N 505 (631)
+.+++++|.++ .+|..+. ++|+.|+|++|+++ .+|..+.. ++|+.|+|++|++++..|..|.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46899999998 6776654 68999999999999 89988888 99999999999999877788999999999999999
Q ss_pred cCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 506 LLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 506 ~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
++++..|..+..+. +|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~-~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 89 RLRCIPPRTFDGLK-SLRLLSLHGNDISV 116 (193)
T ss_dssp CCCBCCTTTTTTCT-TCCEEECCSSCCCB
T ss_pred ccCEeCHHHhCCCC-CCCEEECCCCCCCe
Confidence 99976666666654 89999999999654
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.06 E-value=3.2e-11 Score=124.45 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=18.6
Q ss_pred hccCCchhhhHHHhhhccCCCC
Q 006793 604 YQRQKSLMLLEMESQHAKGLPT 625 (631)
Q Consensus 604 ~~~~~~l~~ldl~~n~~~~~p~ 625 (631)
+.++.+|+.|+|++|+++++|.
T Consensus 213 l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 213 LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp GTTCTTCCEEEEEEEEEECCCE
T ss_pred ccCCCCCCEEEccCCeeecCCe
Confidence 6778889999999999988775
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.06 E-value=3.9e-11 Score=133.88 Aligned_cols=101 Identities=27% Similarity=0.421 Sum_probs=52.7
Q ss_pred CCcce-eecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCC
Q 006793 409 AWEGI-TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486 (631)
Q Consensus 409 ~w~gv-~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~ 486 (631)
.|.|+ .|... +++.|+|++|.|++ +|..+. ++|+.|+|++|+|+ .+| .. ++|+.|+|++|+|++
T Consensus 49 ~~~~l~~C~~~------~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~- 114 (571)
T 3cvr_A 49 AVSLLKECLIN------QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST- 114 (571)
T ss_dssp HHHHHHHHHHT------TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-
T ss_pred hhhhccccccC------CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-
Confidence 47776 56432 25556666666654 454442 45556666666555 455 22 555555555555554
Q ss_pred CCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCC
Q 006793 487 IPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 487 iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
+|. +.+ +|+.|+|++|+|++ +|. ...+|+.|++++|.
T Consensus 115 ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 115 LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQ 151 (571)
T ss_dssp CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSC
T ss_pred cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCc
Confidence 555 433 55555555555553 444 12244555555554
No 96
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.06 E-value=5.8e-11 Score=126.39 Aligned_cols=111 Identities=12% Similarity=0.121 Sum_probs=95.0
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+..++.|++++|.++...+..+..+++|+.|+|++|.+++..|..+.. ++|+.|+|++|++++..|..++++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 456889999999998655556899999999999999999666667888 9999999999999987788899999999999
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
+++|+++ .+|..++....+|+.|++++|.+..
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCc
Confidence 9999999 7777765444589999999998643
No 97
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.05 E-value=2.3e-11 Score=140.17 Aligned_cols=110 Identities=29% Similarity=0.327 Sum_probs=94.7
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+..|+.|+|++|.|+ .+|..|++|++|+.|+|++|.|+ .+|..++. ++|+.|+|++|.|+ .+|..|+.|++|+.|+
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 345889999999999 89999999999999999999999 99999999 99999999999998 8999999999999999
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCCCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 535 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~ 535 (631)
|++|.|+|.+|..+......+..+++++|.+...
T Consensus 323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence 9999999999988765421222355666665443
No 98
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.03 E-value=1.5e-10 Score=119.44 Aligned_cols=102 Identities=22% Similarity=0.322 Sum_probs=80.5
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+.+|+.|+|++|.+++. ++ +..+++|+.|+|++|.+++ +| .+.. ++|+.|+|++|++++ +|. +..+++|+.|+
T Consensus 62 l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLY 135 (308)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEE
Confidence 34588899999999854 44 8889999999999999984 54 5666 889999999999985 554 88899999999
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
+++|++++..+ +..+ .+|+.|++++|.+.
T Consensus 136 l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 136 LDLNQITNISP--LAGL-TNLQYLSIGNAQVS 164 (308)
T ss_dssp CCSSCCCCCGG--GGGC-TTCCEEECCSSCCC
T ss_pred CCCCccCcCcc--ccCC-CCccEEEccCCcCC
Confidence 99999985433 4444 47889999988754
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.01 E-value=2.2e-10 Score=128.91 Aligned_cols=154 Identities=21% Similarity=0.212 Sum_probs=110.5
Q ss_pred ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEE
Q 006793 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (631)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (631)
.+.+|+.|+|++|.|++..+ +..|++|+.|+|++|.|++ +| .+.. ++|+.|+|++|++++ + +.+..|++|+.|
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L 136 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL 136 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEE
T ss_pred cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEE
Confidence 34568899999999997554 8899999999999999984 55 5777 999999999999985 4 458889999999
Q ss_pred EcccCcCccccchhhhhccCCCCeEeecCCCCCCCCCCCCCCCCcccCCCCcCCceEEehhhHHHHHHHHHHHHHHHHhh
Q 006793 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLFWENGGLSKGGKIAIVILSLVLFSGVLLVVYICCIR 580 (631)
Q Consensus 501 ~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~p~~~~c~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~ 580 (631)
+|++|++++. ..+..+. +|+.|+|++|.+....| ...|.. .. .+
T Consensus 137 ~Ls~N~l~~l--~~l~~l~-~L~~L~Ls~N~l~~~~~-l~~l~~---L~------~L----------------------- 180 (605)
T 1m9s_A 137 YLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDIVP-LAGLTK---LQ------NL----------------------- 180 (605)
T ss_dssp ECCSSCCCCC--GGGGSCT-TCSEEECCSSCCCCCGG-GTTCTT---CC------EE-----------------------
T ss_pred ECCCCccCCc--hhhcccC-CCCEEECcCCcCCCchh-hccCCC---CC------EE-----------------------
Confidence 9999999864 4455554 89999999998544322 111110 00 00
Q ss_pred cCCCCCCCCCchhhhhHHHHhhhhccCCchhhhHHHhhhccCCCCCCC
Q 006793 581 RGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLPL 628 (631)
Q Consensus 581 r~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ldl~~n~~~~~p~~~~ 628 (631)
....+.+.++ ..+.++.+|+.|||+.|++++.|-..+
T Consensus 181 -------~Ls~N~i~~l----~~l~~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 181 -------YLSKNHISDL----RALAGLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp -------ECCSSCCCBC----GGGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred -------ECcCCCCCCC----hHHccCCCCCEEEccCCcCcCCccccc
Confidence 0011111122 246778899999999999999886543
No 100
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.00 E-value=3.2e-10 Score=126.80 Aligned_cols=105 Identities=23% Similarity=0.251 Sum_probs=90.6
Q ss_pred CCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCC-CccCCCCCCC
Q 006793 420 DETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI-PDSLTSSSKL 497 (631)
Q Consensus 420 ~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~i-P~~l~~l~~L 497 (631)
.+.+..|+.|+|++|.|+ .+|..++.|++|+.|+|++|.|++ +| .++. ++|+.|+|++|+|++.. |..++.+++|
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence 345567999999999999 889999999999999999999995 88 7888 99999999999999876 9999999999
Q ss_pred CEEEcccCcCccccch--hhhhccCCCCeEee
Q 006793 498 QLVLLNNNLLEGRVPE--ELYSIGVHGGAFDL 527 (631)
Q Consensus 498 ~~L~ls~N~l~g~iP~--~l~~~~~~L~~l~l 527 (631)
+.|+|++|+|++..|. .+....++|+.|++
T Consensus 536 ~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999977653 23444457777763
No 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.00 E-value=6.3e-11 Score=129.06 Aligned_cols=92 Identities=23% Similarity=0.288 Sum_probs=47.7
Q ss_pred EEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCccccccccccccccccCCCCCCccCCCCCCCCEEEcccC
Q 006793 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N 505 (631)
|+.|++++|.+++ +|.. +++|+.|++++|++++ +|... ++|+.|++++|++++ +| +++++++|++|++++|
T Consensus 93 L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~~--~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 93 LESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDLP--PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp CSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred CCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCCC--CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 5566666666665 4432 2455555555555552 33211 355555555555553 55 3555555555555555
Q ss_pred cCccccchhhhhccCCCCeEeecCCC
Q 006793 506 LLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 506 ~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
++++ +|... .+|+.|++++|.
T Consensus 164 ~l~~-lp~~~----~~L~~L~L~~n~ 184 (454)
T 1jl5_A 164 SLKK-LPDLP----PSLEFIAAGNNQ 184 (454)
T ss_dssp CCSC-CCCCC----TTCCEEECCSSC
T ss_pred cCcc-cCCCc----ccccEEECcCCc
Confidence 5553 44322 144555555554
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=1.5e-10 Score=127.28 Aligned_cols=116 Identities=19% Similarity=0.117 Sum_probs=92.1
Q ss_pred CCcceeecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCccc-c-ccccccccccccCCCC
Q 006793 409 AWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGS 486 (631)
Q Consensus 409 ~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~-~-~~L~~L~Ls~N~l~g~ 486 (631)
.+.++.|.. +..|+.|+|++|.+++..|..++.+++|+.|+|++|.+++.+|..+. . ++|+.|+|++|.+++.
T Consensus 110 ~l~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 110 NISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CCCCEEECC-----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cCCCCCccc-----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 455555542 24588899999999988888899999999999999999988888776 4 8899999999999864
Q ss_pred CCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 487 IPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 487 iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
|. +..+++|+.|+|++|++++ +|+.+..+. +|+.|++++|.+.
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~-~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 185 -KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAA-GVTWISLRNNKLV 227 (487)
T ss_dssp -EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGT-TCSEEECTTSCCC
T ss_pred -cc-cccCCCCCEEECCCCCCCC-CCHhHcCCC-CccEEEecCCcCc
Confidence 33 4468899999999999986 455566654 7899999998854
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.99 E-value=2.1e-10 Score=117.23 Aligned_cols=102 Identities=24% Similarity=0.262 Sum_probs=78.8
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+.+|+.|+|++|.+++..+ +..+++|+.|+|++|.+++ +|. +.. ++|+.|+|++|++++ + +.+..+++|+.|+
T Consensus 67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLY 140 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEE
T ss_pred CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEE
Confidence 3458888999998886444 8888899999999998884 444 666 889999999998885 4 4678888899999
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
+++|++++. ..+..+. +|+.|++++|.+.
T Consensus 141 l~~n~l~~~--~~l~~l~-~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 141 LGNNKITDI--TVLSRLT-KLDTLSLEDNQIS 169 (291)
T ss_dssp CCSSCCCCC--GGGGGCT-TCSEEECCSSCCC
T ss_pred ccCCcCCcc--hhhccCC-CCCEEEccCCccc
Confidence 999988854 4454544 7888999888754
No 104
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.98 E-value=1.7e-10 Score=108.69 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=36.1
Q ss_pred EEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcc-cc-ccccccccccccCCCCCCc--cCCCCCCCCEEE
Q 006793 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLVL 501 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~-~~-~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~ 501 (631)
|+.|+|++|.+++. +.+..+++|+.|+|++|.++ .+|+.+ .. ++|+.|+|++|+++ .+|. .+..+++|+.|+
T Consensus 44 L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 44 FDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 44444555544432 34444444555555555444 233322 33 44555555555443 3443 444444455555
Q ss_pred cccCcCc
Q 006793 502 LNNNLLE 508 (631)
Q Consensus 502 ls~N~l~ 508 (631)
+++|.++
T Consensus 120 l~~N~i~ 126 (176)
T 1a9n_A 120 ILRNPVT 126 (176)
T ss_dssp CCSSGGG
T ss_pred ecCCCCC
Confidence 5555444
No 105
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.98 E-value=5.2e-10 Score=126.06 Aligned_cols=107 Identities=22% Similarity=0.206 Sum_probs=86.2
Q ss_pred CceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCc-ccc-ccccccccccccCCCCCCccCCCCCCCC
Q 006793 421 ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498 (631)
Q Consensus 421 ~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~ 498 (631)
+.+..|+.|+|++|.+++..|..|+++++|++|+|++|.++ .+|+. +.. ++|+.|+|++|.+++..|..|+.+++|+
T Consensus 96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence 34566889999999999888888899999999999999999 56665 466 8999999999999988888899999999
Q ss_pred EEEcccCcCccccchhhhhccCCCCeEeecCCCC
Q 006793 499 LVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 499 ~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
.|+|++|.+++. +. ..+ .+|+.+++++|.+
T Consensus 175 ~L~L~~N~l~~~-~~--~~l-~~L~~L~l~~n~l 204 (597)
T 3oja_B 175 NLQLSSNRLTHV-DL--SLI-PSLFHANVSYNLL 204 (597)
T ss_dssp EEECTTSCCSBC-CG--GGC-TTCSEEECCSSCC
T ss_pred EEECcCCCCCCc-Ch--hhh-hhhhhhhcccCcc
Confidence 999999999864 32 122 3566777777654
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.98 E-value=2.6e-10 Score=114.87 Aligned_cols=98 Identities=20% Similarity=0.318 Sum_probs=57.8
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
.|+.|++++|.++ .++ .+..+++|+.|+|++|+++ .+|+ +.. ++|+.|+|++|++++ +|... . ++|+.|+++
T Consensus 42 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECC
T ss_pred cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEcc
Confidence 3566666666666 344 5666666666666666666 3444 555 666666666666663 44322 2 666666666
Q ss_pred cCcCccccchhhhhccCCCCeEeecCCCC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
+|++++ +| .+..+. +|+.|++++|.+
T Consensus 115 ~N~l~~-~~-~l~~l~-~L~~L~Ls~N~i 140 (263)
T 1xeu_A 115 NNELRD-TD-SLIHLK-NLEILSIRNNKL 140 (263)
T ss_dssp SSCCSB-SG-GGTTCT-TCCEEECTTSCC
T ss_pred CCccCC-Ch-hhcCcc-cccEEECCCCcC
Confidence 666664 33 233332 566666666653
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.97 E-value=2.4e-10 Score=118.28 Aligned_cols=107 Identities=23% Similarity=0.238 Sum_probs=68.3
Q ss_pred eEEEEEEecCCCCcccCchhhc-ccccccccccccccCCCCCCCccccccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g~iP~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
..|+.|+|++|.+++..+..+. .+++|+.|+|++|.++ .+|.....++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-ccccccccccCCEEECCCCcCCc-chhhhcccCcccEEEC
Confidence 4467777777777765555553 5677777777777776 33333222667777777777763 5555666777777777
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
++|+++ .+|..+..+. +|+.|++++|++.|
T Consensus 222 ~~N~l~-~l~~~~~~l~-~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 222 RNNKLV-LIEKALRFSQ-NLEHFDLRGNGFHC 251 (317)
T ss_dssp TTSCCC-EECTTCCCCT-TCCEEECTTCCCBH
T ss_pred cCCccc-chhhHhhcCC-CCCEEEccCCCccC
Confidence 777776 4666554443 66777777777655
No 108
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.96 E-value=2.7e-10 Score=117.87 Aligned_cols=106 Identities=20% Similarity=0.107 Sum_probs=91.1
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCccc-c-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~-~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
..|+.|+|++|.+++..+..+..+++|+.|+|++|.+++..|..+. . ++|+.|+|++|++++ +|. ...+++|+.|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEE
Confidence 4589999999999988888999999999999999999977777775 4 899999999999995 444 44589999999
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
|++|+++ .+|..+..+. +|+.|++++|++.
T Consensus 198 Ls~N~l~-~l~~~~~~l~-~L~~L~L~~N~l~ 227 (317)
T 3o53_A 198 LSSNKLA-FMGPEFQSAA-GVTWISLRNNKLV 227 (317)
T ss_dssp CCSSCCC-EECGGGGGGT-TCSEEECTTSCCC
T ss_pred CCCCcCC-cchhhhcccC-cccEEECcCCccc
Confidence 9999999 4666666664 8999999999865
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.95 E-value=3.5e-10 Score=106.44 Aligned_cols=102 Identities=19% Similarity=0.202 Sum_probs=84.9
Q ss_pred EEEEEEecCCCCcccCchhhcccc-cccccccccccCCCCCCCcccc-ccccccccccccCCCCCCcc-CCCCCCCCEEE
Q 006793 425 VISQIDLGSQGLKGYISDKISLLS-NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS-LTSSSKLQLVL 501 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~-~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~L~ 501 (631)
.|+.|+|++|.++. +|. +..+. +|+.|+|++|.+++ + +.+.. ++|+.|+|++|++++ +|.. +..+++|++|+
T Consensus 20 ~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 20 RDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELI 94 (176)
T ss_dssp SCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEE
T ss_pred CceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEE
Confidence 48899999999994 554 55555 99999999999995 4 56777 999999999999995 5654 48999999999
Q ss_pred cccCcCccccch--hhhhccCCCCeEeecCCCCC
Q 006793 502 LNNNLLEGRVPE--ELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 502 ls~N~l~g~iP~--~l~~~~~~L~~l~l~~N~~l 533 (631)
+++|+++ .+|. .+..+. +|+.|++++|++.
T Consensus 95 L~~N~i~-~~~~~~~l~~l~-~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLK-SLTYLCILRNPVT 126 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCT-TCCEEECCSSGGG
T ss_pred CCCCcCC-cchhhHhhhcCC-CCCEEEecCCCCC
Confidence 9999996 6776 565554 8999999999853
No 110
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.95 E-value=8.9e-10 Score=117.19 Aligned_cols=107 Identities=22% Similarity=0.209 Sum_probs=87.4
Q ss_pred CceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcc-cc-ccccccccccccCCCCCCccCCCCCCCC
Q 006793 421 ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498 (631)
Q Consensus 421 ~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~-~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~ 498 (631)
..+.+|+.|+|++|.+++..|..++++++|++|+|++|.++ .+|..+ .. ++|+.|+|++|++++..|..+..+++|+
T Consensus 90 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 34567899999999999888888999999999999999999 777764 66 9999999999999987788899999999
Q ss_pred EEEcccCcCccccchhhhhccCCCCeEeecCCCC
Q 006793 499 LVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 499 ~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
.|++++|++++. +. ..+ ++|+.+++++|.+
T Consensus 169 ~L~l~~n~l~~~-~~--~~l-~~L~~L~l~~n~l 198 (390)
T 3o6n_A 169 NLQLSSNRLTHV-DL--SLI-PSLFHANVSYNLL 198 (390)
T ss_dssp EEECCSSCCSBC-CG--GGC-TTCSEEECCSSCC
T ss_pred EEECCCCcCCcc-cc--ccc-cccceeecccccc
Confidence 999999999854 32 222 3566777776653
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.95 E-value=2.1e-10 Score=127.97 Aligned_cols=147 Identities=19% Similarity=0.251 Sum_probs=94.5
Q ss_pred eeeeEeecCCceEEEEEcccchhhhhhccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 006793 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (631)
Q Consensus 334 ~~~~~l~ls~n~L~~~l~~~~~~~~Ln~lEi~~l~~~~~~~~p~~~~~l~~l~~~~~~~~~~~w~gdpc~~~~~~~w~gv 413 (631)
..+..+++++|.++. ++. .. +.++.+.+..|....+|. .+.+|+... . +. +...++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~----~~L~~L~Ls~N~l~~lp~---~l~~L~~L~-L----s~----------N~l~~l 155 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LP----ASLKHLDVDNNQLTMLPE---LPALLEYIN-A----DN----------NQLTML 155 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CC----TTCCEEECCSSCCSCCCC---CCTTCCEEE-C----CS----------SCCSCC
T ss_pred CCCCEEEccCCCCCC-cch-hh----cCCCEEECCCCcCCCCCC---cCccccEEe-C----CC----------CccCcC
Confidence 356677777777764 554 32 256666666666655665 122222111 0 00 111222
Q ss_pred eecCCCCCceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCccccccc-------cccccccccCCCC
Q 006793 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSL-------VRLDLSDNQFTGS 486 (631)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~L-------~~L~Ls~N~l~g~ 486 (631)
.. .+.+|+.|+|++|.|++ +|. |. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .
T Consensus 156 p~------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~-~ 221 (571)
T 3cvr_A 156 PE------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV-RNHHSEETEIFFRCRENRIT-H 221 (571)
T ss_dssp CC------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------CCEEEECCSSCCC-C
T ss_pred CC------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH-hhhcccccceEEecCCCcce-e
Confidence 11 12347788888888886 666 55 78888888888888 7777 443 56 88888888888 6
Q ss_pred CCccCCCCCCCCEEEcccCcCccccchhhhhc
Q 006793 487 IPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI 518 (631)
Q Consensus 487 iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~ 518 (631)
+|..+..+++|+.|+|++|.|++.+|..+..+
T Consensus 222 lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 88888888888888888888888888877765
No 112
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=5.9e-10 Score=116.59 Aligned_cols=129 Identities=21% Similarity=0.200 Sum_probs=95.4
Q ss_pred CCCCcceeecCC-C------CCceeEEEEEEecC-CCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccc
Q 006793 407 WDAWEGITCHPN-K------DETAVVISQIDLGS-QGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLD 477 (631)
Q Consensus 407 ~~~w~gv~c~~~-~------~~~~~~l~~L~Ls~-n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~ 477 (631)
.|.|..+.|... . ...+.+|+.|+|++ |.|++..+..|.+|++|+.|+|++|+|+|..|..+.. ++|+.|+
T Consensus 7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 378888999765 2 23345689999996 9999888889999999999999999999878888888 9999999
Q ss_pred cccccCCCCCCccCCCCCCCCEEEcccCcCccccchh-hhhccCCCCeEeecCCCCCCCCC
Q 006793 478 LSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFDLSGNKGLCGAP 537 (631)
Q Consensus 478 Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~-l~~~~~~L~~l~l~~N~~lc~~p 537 (631)
|++|+|++..|..+..++ |+.|+|++|.|...-.-. +.... ......+..+...|..|
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~-~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWE-EEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHH-HTTCSSCGGGCCCCSSS
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHH-HhCcccccccCCCCCCC
Confidence 999999964444455555 999999999998543312 22211 11223344455667543
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.93 E-value=5.5e-10 Score=121.72 Aligned_cols=80 Identities=25% Similarity=0.232 Sum_probs=53.5
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+..|+.|+|++|.+++ +| ++.+++|+.|++++|++++. .++. ++|+.|++++|++++ +| ++.+++|+.|+
T Consensus 169 l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp CTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred CCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 3446677777777775 34 66677777777777777743 2555 677777777777775 55 66677777777
Q ss_pred cccCcCcccc
Q 006793 502 LNNNLLEGRV 511 (631)
Q Consensus 502 ls~N~l~g~i 511 (631)
+++|++++..
T Consensus 240 l~~N~l~~~~ 249 (457)
T 3bz5_A 240 CSVNPLTELD 249 (457)
T ss_dssp CCSSCCSCCC
T ss_pred eeCCcCCCcC
Confidence 7777777543
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.93 E-value=2.5e-10 Score=116.76 Aligned_cols=102 Identities=24% Similarity=0.341 Sum_probs=82.8
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
.+|+.|+|++|.+++. +.+..+++|+.|+|++|++++ + +.+.. ++|+.|+|++|++++ ++. +..+++|+.|++
T Consensus 112 ~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L 185 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYL 185 (291)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCcccc-chh-hcCCCccCEEEC
Confidence 4588899999999863 568889999999999999985 4 56677 899999999999986 444 888999999999
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
++|++++ +|. +..+. +|+.|++++|++.+
T Consensus 186 ~~N~i~~-l~~-l~~l~-~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 186 SKNHISD-LRA-LAGLK-NLDVLELFSQECLN 214 (291)
T ss_dssp CSSCCCB-CGG-GTTCT-TCSEEEEEEEEEEC
T ss_pred CCCcCCC-Chh-hccCC-CCCEEECcCCcccC
Confidence 9999984 554 55544 88999999998544
No 115
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.93 E-value=4e-10 Score=125.30 Aligned_cols=109 Identities=19% Similarity=0.153 Sum_probs=72.7
Q ss_pred ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCC-CCCCcccc-ccccccccccccCCCCCC-ccCCCCCCCC
Q 006793 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-TLPSGLGQ-QSLVRLDLSDNQFTGSIP-DSLTSSSKLQ 498 (631)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~iP~~~~~-~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~ 498 (631)
.+.+|+.|+|++|.+++..|..|+++++|++|+|++|.+++ .+|..++. ++|+.|++++|++.+.+| ..+.++++|+
T Consensus 72 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 151 (549)
T 2z81_A 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151 (549)
T ss_dssp TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence 34456777777777776666667777777777777777764 34555666 677777777776545555 3566777777
Q ss_pred EEEcccCcCccccchhhhhccCCCCeEeecCCC
Q 006793 499 LVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 499 ~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
+|++++|++++.+|..+..+. +|+.|++++|.
T Consensus 152 ~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~ 183 (549)
T 2z81_A 152 ELEIKALSLRNYQSQSLKSIR-DIHHLTLHLSE 183 (549)
T ss_dssp EEEEEETTCCEECTTTTTTCS-EEEEEEEECSB
T ss_pred eeeccCCcccccChhhhhccc-cCceEecccCc
Confidence 777777777766776666554 56677777665
No 116
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.92 E-value=1.4e-09 Score=121.40 Aligned_cols=111 Identities=19% Similarity=0.207 Sum_probs=75.3
Q ss_pred ceeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCC-CCCccCCCCCCCCE
Q 006793 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-SIPDSLTSSSKLQL 499 (631)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~ 499 (631)
.+.+|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..++. ++|+.|+|++|.+++ .+|..++++++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 3455777777777777666667777777777777777777333334666 777777777777765 46777777777777
Q ss_pred EEcccCcCccccchhhhhccCCC----CeEeecCCCCC
Q 006793 500 VLLNNNLLEGRVPEELYSIGVHG----GAFDLSGNKGL 533 (631)
Q Consensus 500 L~ls~N~l~g~iP~~l~~~~~~L----~~l~l~~N~~l 533 (631)
|++++|++++..|..+..+. +| ..+++++|.+.
T Consensus 154 L~l~~n~l~~~~~~~~~~l~-~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 154 LDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp EECTTSCCCEECGGGGHHHH-TCTTCCCEEECTTCCCC
T ss_pred EeCcCCccceecHHHccchh-ccchhhhhcccCCCCce
Confidence 77777777765555555543 44 56777777644
No 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.90 E-value=3.2e-09 Score=99.76 Aligned_cols=104 Identities=22% Similarity=0.252 Sum_probs=84.4
Q ss_pred EEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEccc
Q 006793 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~ 504 (631)
.+.+++++|+++ .+|..+. ++|+.|+|++|++++..+..+.. ++|+.|+|++|++++..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 457899999998 5665443 78999999999999554555677 9999999999999965556689999999999999
Q ss_pred CcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 505 NLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 505 N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
|++++..+..+..+ .+|+.|++++|.+.
T Consensus 86 N~l~~~~~~~~~~l-~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 86 NKLQSLPNGVFDKL-TQLKELALDTNQLK 113 (177)
T ss_dssp SCCCCCCTTTTTTC-TTCCEEECCSSCCS
T ss_pred CCccccCHHHhhCC-cccCEEECcCCcce
Confidence 99995544444444 48999999999865
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.89 E-value=4.8e-10 Score=126.22 Aligned_cols=101 Identities=25% Similarity=0.390 Sum_probs=70.2
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
.+|+.|+|++|.|.+ + +.+..|++|+.|+|++|.+++ + +.+.. ++|+.|+|++|+|++..| +..|++|+.|+|
T Consensus 109 ~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 109 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp TTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 447777888887775 2 457777788888888887774 3 45556 778888888888776444 777778888888
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
++|+|++ +| .+..+. +|+.|++++|++.
T Consensus 183 s~N~i~~-l~-~l~~l~-~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 183 SKNHISD-LR-ALAGLK-NLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCB-CG-GGTTCT-TCSEEECCSEEEE
T ss_pred cCCCCCC-Ch-HHccCC-CCCEEEccCCcCc
Confidence 8887774 33 344443 6777777777643
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.89 E-value=1.5e-09 Score=118.26 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=50.4
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
..|+.|+|++|.+++. | ++.+++|++|+|++|.+++ +| ++. ++|+.|++++|++++ +| ++.+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 3455555555555542 2 5555555555555555553 32 444 555666666665554 33 555556666666
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
++|++++ +| +..+ .+|+.|++++|+
T Consensus 135 ~~N~l~~-l~--l~~l-~~L~~L~l~~n~ 159 (457)
T 3bz5_A 135 ARNTLTE-ID--VSHN-TQLTELDCHLNK 159 (457)
T ss_dssp TTSCCSC-CC--CTTC-TTCCEEECTTCS
T ss_pred CCCccce-ec--cccC-CcCCEEECCCCC
Confidence 6665554 22 2222 245566666554
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.88 E-value=4.2e-10 Score=122.49 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=65.1
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccc-------------cccccccccCCCCCCc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL-------------VRLDLSDNQFTGSIPD 489 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L-------------~~L~Ls~N~l~g~iP~ 489 (631)
..|+.|++++|.+ |.+|+++++|++|++|++++|.++|.+|..++. .+| +.|++++|++++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 5689999999999 899999999999999999999999999999987 654 899999999995 666
Q ss_pred cCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 490 SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 490 ~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
. .++|+.|++++|++++ +|..+ .+|+.|++++|.+.
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~~----~~L~~L~l~~n~l~ 124 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPELP----QSLKSLLVDNNNLK 124 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCCC----TTCCEEECCSSCCS
T ss_pred C---cCCCCEEEccCCcCCc-ccccc----CCCcEEECCCCccC
Confidence 3 3789999999999996 77543 47889999988754
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.83 E-value=4.6e-09 Score=105.64 Aligned_cols=103 Identities=22% Similarity=0.276 Sum_probs=76.9
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCccccccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
+..|+.|+|++|.+++..+ +..+++|+.|+|++|+++ .+|.... ++|+.|+|++|++++ +| .+..+++|+.|++
T Consensus 62 l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSI 135 (263)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTCCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEEC
T ss_pred CCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCcccc-CcccEEEccCCccCC-Ch-hhcCcccccEEEC
Confidence 3457888888888886443 888888888888888888 4665433 788888888888885 44 5788888888888
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
++|++++ +| .+..+. +|+.|++++|++..
T Consensus 136 s~N~i~~-~~-~l~~l~-~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 136 RNNKLKS-IV-MLGFLS-KLEVLDLHGNEITN 164 (263)
T ss_dssp TTSCCCB-CG-GGGGCT-TCCEEECTTSCCCB
T ss_pred CCCcCCC-Ch-HHccCC-CCCEEECCCCcCcc
Confidence 8888885 34 444443 78888888887544
No 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.81 E-value=1.6e-09 Score=118.17 Aligned_cols=101 Identities=21% Similarity=0.319 Sum_probs=71.4
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
.+|+.|++++|.+++..+ +..+++|+.|+|++|.+++ +|. +.. ++|+.|+|++|++++. |. ++.+++|+.|++
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L 316 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTL 316 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEEC
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEEC
Confidence 347778888888876544 7777888888888888874 443 555 7788888888888753 33 677788888888
Q ss_pred ccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 503 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 503 s~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
++|++++..| +..+ .+|+.|++++|++.
T Consensus 317 ~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 317 YFNNISDISP--VSSL-TKLQRLFFYNNKVS 344 (466)
T ss_dssp CSSCCSCCGG--GGGC-TTCCEEECCSSCCC
T ss_pred cCCcCCCchh--hccC-ccCCEeECCCCccC
Confidence 8888876655 3333 37778888877644
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.78 E-value=5.1e-10 Score=118.93 Aligned_cols=110 Identities=19% Similarity=0.167 Sum_probs=86.6
Q ss_pred eEEEEEEecCCCCcccCc----hhhcccccccccccccc---cCCCCCCCcc-------cc-ccccccccccccCCC---
Q 006793 424 VVISQIDLGSQGLKGYIS----DKISLLSNLVNLNLSTN---SLGGTLPSGL-------GQ-QSLVRLDLSDNQFTG--- 485 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p----~~~~~l~~L~~L~Ls~N---~l~g~iP~~~-------~~-~~L~~L~Ls~N~l~g--- 485 (631)
..|+.|+|++|.+++..+ ..+..+++|+.|+|++| +++|.+|..+ .. ++|+.|+|++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 348899999999987643 44778999999999985 5666777766 45 889999999999987
Q ss_pred -CCCccCCCCCCCCEEEcccCcCccccchhhhhcc------------CCCCeEeecCCCCC
Q 006793 486 -SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG------------VHGGAFDLSGNKGL 533 (631)
Q Consensus 486 -~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~------------~~L~~l~l~~N~~l 533 (631)
.+|..+..+++|++|+|++|.+++..+..+.... ++|+.|++++|++.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 4788888899999999999999755554444321 47899999999854
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.76 E-value=3.9e-09 Score=119.08 Aligned_cols=95 Identities=29% Similarity=0.318 Sum_probs=67.0
Q ss_pred EEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEccc
Q 006793 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~ 504 (631)
|+.|++++|.++ .+|. .+++|+.|+|++|+++ .+| .. ++|+.|+|++|+|+ .+|. .+++|+.|+|++
T Consensus 203 L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~ 270 (622)
T 3g06_A 203 LYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR 270 (622)
T ss_dssp CCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred hhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence 444444444444 2232 1367788888888888 466 33 77888888888888 5776 567888888888
Q ss_pred CcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 505 NLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 505 N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
|+|+ .+|..+..+. +|+.|++++|++.+
T Consensus 271 N~L~-~lp~~l~~l~-~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 271 NQLT-RLPESLIHLS-SETTVNLEGNPLSE 298 (622)
T ss_dssp SCCC-SCCGGGGGSC-TTCEEECCSCCCCH
T ss_pred CCCC-cCCHHHhhcc-ccCEEEecCCCCCC
Confidence 8888 7888777665 78888888888653
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.75 E-value=1.9e-10 Score=110.53 Aligned_cols=105 Identities=20% Similarity=0.235 Sum_probs=82.4
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
..|+.|+|++|.+++ +| .+..+++|+.|+|++|.++ .+|..+.. ++|+.|+|++|++++ +| .+..+++|+.|++
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence 457888999998886 66 8888899999999999988 78887777 889999999999885 66 5778888999999
Q ss_pred ccCcCccccc-hhhhhccCCCCeEeecCCCCCC
Q 006793 503 NNNLLEGRVP-EELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 503 s~N~l~g~iP-~~l~~~~~~L~~l~l~~N~~lc 534 (631)
++|++++.-+ ..+..+ ++|+.|++++|++.|
T Consensus 123 ~~N~i~~~~~~~~l~~l-~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAAL-DKLEDLLLAGNPLYN 154 (198)
T ss_dssp SEEECCCHHHHHHHTTT-TTCSEEEECSCHHHH
T ss_pred CCCcCCchhHHHHHhcC-CCCCEEEecCCcccc
Confidence 9998884222 244444 378889998887544
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.74 E-value=2e-10 Score=110.27 Aligned_cols=101 Identities=21% Similarity=0.238 Sum_probs=84.0
Q ss_pred EEEEecCCCCcccCch------hhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCE
Q 006793 427 SQIDLGSQGLKGYISD------KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (631)
Q Consensus 427 ~~L~Ls~n~l~g~~p~------~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~ 499 (631)
+.++++.+.+.|.+|. .+..+++|+.|+|++|.+++ +| .+.. ++|+.|+|++|+++ .+|..+..+++|+.
T Consensus 21 ~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97 (198)
T ss_dssp CCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSE
T ss_pred cCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCE
Confidence 3445555555555555 99999999999999999995 88 7777 99999999999999 79988888899999
Q ss_pred EEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 500 VLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 500 L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
|++++|++++ +| .+..+. +|+.|++++|++.
T Consensus 98 L~L~~N~l~~-l~-~~~~l~-~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 98 LWISYNQIAS-LS-GIEKLV-NLRVLYMSNNKIT 128 (198)
T ss_dssp EEEEEEECCC-HH-HHHHHH-HSSEEEESEEECC
T ss_pred EECcCCcCCc-CC-ccccCC-CCCEEECCCCcCC
Confidence 9999999996 56 565554 7899999999854
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.73 E-value=1.6e-09 Score=114.17 Aligned_cols=107 Identities=23% Similarity=0.257 Sum_probs=78.0
Q ss_pred EEEEEecCCCCcccCc----hhhcccc-cccccccccccCCCCCCCcccc------ccccccccccccCCCCCCccCCC-
Q 006793 426 ISQIDLGSQGLKGYIS----DKISLLS-NLVNLNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGSIPDSLTS- 493 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p----~~~~~l~-~L~~L~Ls~N~l~g~iP~~~~~------~~L~~L~Ls~N~l~g~iP~~l~~- 493 (631)
|+.|+|++|.+++..+ ..+..++ +|+.|+|++|.+++..+..+.. ++|+.|+|++|++++..+..+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 7788888888887666 6677777 7888888888888666655544 56888888888888766654433
Q ss_pred ---C-CCCCEEEcccCcCccccchhhhhc----cCCCCeEeecCCCC
Q 006793 494 ---S-SKLQLVLLNNNLLEGRVPEELYSI----GVHGGAFDLSGNKG 532 (631)
Q Consensus 494 ---l-~~L~~L~ls~N~l~g~iP~~l~~~----~~~L~~l~l~~N~~ 532 (631)
+ ++|+.|+|++|++++..+..+... ..+|+.|++++|.+
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 3 788888888888876665555442 34678888888764
No 128
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.72 E-value=5.8e-09 Score=108.77 Aligned_cols=103 Identities=23% Similarity=0.305 Sum_probs=64.6
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
.|+.|+|++|.+++..+ +..+++|+.|++++|.+++ + +.+.. ++|+.|++++|++++ + +.+..+++|+.|+++
T Consensus 222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLN 295 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECC
T ss_pred cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECc
Confidence 46667777777664332 6666777777777777663 3 23444 667777777777664 3 346666677777777
Q ss_pred cCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
+|++++..|..+..+. +|+.|++++|++.+
T Consensus 296 ~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGLT-NLTTLFLSQNHITD 325 (347)
T ss_dssp SSCCCGGGHHHHHTCT-TCSEEECCSSSCCC
T ss_pred CCcCCCcChhHhhccc-cCCEEEccCCcccc
Confidence 7777666665555544 66677777776444
No 129
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.66 E-value=2.2e-08 Score=104.43 Aligned_cols=103 Identities=18% Similarity=0.281 Sum_probs=76.6
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+.+|+.|++++|.+++. +.+..+++|+.|++++|.+++ +| .+.. ++|+.|++++|++++..|..++.+++|+.|+
T Consensus 242 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred CCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 45578888888888753 467788888888888888884 43 4555 8888888888888877777788888888888
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
+++|++++..| +..+ ++|+.+++++|++
T Consensus 318 L~~n~l~~~~~--~~~l-~~L~~L~l~~N~i 345 (347)
T 4fmz_A 318 LSQNHITDIRP--LASL-SKMDSADFANQVI 345 (347)
T ss_dssp CCSSSCCCCGG--GGGC-TTCSEESSSCC--
T ss_pred ccCCccccccC--hhhh-hccceeehhhhcc
Confidence 88888886555 4444 3778888888874
No 130
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.62 E-value=1.9e-08 Score=109.70 Aligned_cols=103 Identities=20% Similarity=0.283 Sum_probs=83.8
Q ss_pred eeEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEE
Q 006793 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
+..|+.|+|++|.+++..+ +..+++|+.|+|++|++++..| +.. ++|+.|++++|++++. ..+.++++|+.|+
T Consensus 286 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 3458889999999986544 7889999999999999996555 566 8999999999999863 4688899999999
Q ss_pred cccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
+++|++++..| +..+. +|+.|++++|++.+
T Consensus 360 l~~n~l~~~~~--~~~l~-~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLT-RITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCBCGG--GTTCT-TCCEEECCCEEEEC
T ss_pred CCCCccCccch--hhcCC-CCCEEeccCCcccC
Confidence 99999998777 54554 78899999988665
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.62 E-value=3.6e-09 Score=112.29 Aligned_cols=110 Identities=19% Similarity=0.258 Sum_probs=88.0
Q ss_pred EEEEEEecCCCCc--c---cCchhhcccccccccccccccCC----CCCCCcccc-ccccccccccccCCCC----CCcc
Q 006793 425 VISQIDLGSQGLK--G---YISDKISLLSNLVNLNLSTNSLG----GTLPSGLGQ-QSLVRLDLSDNQFTGS----IPDS 490 (631)
Q Consensus 425 ~l~~L~Ls~n~l~--g---~~p~~~~~l~~L~~L~Ls~N~l~----g~iP~~~~~-~~L~~L~Ls~N~l~g~----iP~~ 490 (631)
.|+.|+|++|.++ | .++..+..+++|+.|+|++|.++ +.+|..+.. ++|+.|+|++|++++. +|..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 4788999999987 3 34447888999999999999986 567887777 8899999999998865 5666
Q ss_pred C--CCCCCCCEEEcccCcCcc----ccchhhhhccCCCCeEeecCCCCCC
Q 006793 491 L--TSSSKLQLVLLNNNLLEG----RVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 491 l--~~l~~L~~L~ls~N~l~g----~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
+ +.+++|+.|+|++|.+++ .+|..+....++|+.|++++|++.+
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 6 448899999999999987 5888875544588999999988543
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.62 E-value=3.7e-08 Score=111.11 Aligned_cols=92 Identities=24% Similarity=0.278 Sum_probs=52.9
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcccc-ccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
+|+.|+|++|.|+ .+|. .+++|++|+|++|+++ .+|. . ++|+.|+|++|++++ +|. .+++|+.|+++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 3556666666665 3443 3556666666666666 4554 3 556666666666663 444 34566666666
Q ss_pred cCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
+|+++ .+|..+ .+|+.|++++|.+.
T Consensus 130 ~N~l~-~lp~~l----~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 130 GNQLT-SLPVLP----PGLQELSVSDNQLA 154 (622)
T ss_dssp SSCCS-CCCCCC----TTCCEEECCSSCCS
T ss_pred CCCCC-cCCCCC----CCCCEEECcCCcCC
Confidence 66666 355432 35667777776643
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.57 E-value=3.3e-09 Score=110.09 Aligned_cols=107 Identities=23% Similarity=0.219 Sum_probs=57.6
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccc-cCCCC-CCCcccc-ccccccccccc-cCCCC-CCccCCCCC-CC
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTN-SLGGT-LPSGLGQ-QSLVRLDLSDN-QFTGS-IPDSLTSSS-KL 497 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N-~l~g~-iP~~~~~-~~L~~L~Ls~N-~l~g~-iP~~l~~l~-~L 497 (631)
.+|+.|+|++|.+++..+..+..+++|++|+|++| .+++. +|..+.. ++|+.|+|++| .+++. +|..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 34555666666555555555555566666666655 45432 4444444 55666666666 55532 444455555 66
Q ss_pred CEEEcccC--cCc-cccchhhhhccCCCCeEeecCCC
Q 006793 498 QLVLLNNN--LLE-GRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 498 ~~L~ls~N--~l~-g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
++|++++| .++ +.+|..+..+. +|+.|++++|.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~ 233 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCP-NLVHLDLSDSV 233 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCT-TCSEEECTTCT
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCC-CCCEEeCCCCC
Confidence 66666665 343 34444444433 55666666655
No 134
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.50 E-value=6.9e-09 Score=107.61 Aligned_cols=108 Identities=17% Similarity=0.246 Sum_probs=90.4
Q ss_pred eeEEEEEEecCC-CCcc-cCchhhcccccccccccccc-cCCCC-CCCcccc-c-cccccccccc--cCC-CCCCccCCC
Q 006793 423 AVVISQIDLGSQ-GLKG-YISDKISLLSNLVNLNLSTN-SLGGT-LPSGLGQ-Q-SLVRLDLSDN--QFT-GSIPDSLTS 493 (631)
Q Consensus 423 ~~~l~~L~Ls~n-~l~g-~~p~~~~~l~~L~~L~Ls~N-~l~g~-iP~~~~~-~-~L~~L~Ls~N--~l~-g~iP~~l~~ 493 (631)
+.+|+.|+|++| .+++ .++..+..+++|+.|+|++| .+++. ++..+.. + +|+.|+|++| .++ +.+|..+..
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 456899999999 7876 37778899999999999999 88864 5666777 7 9999999999 555 567877888
Q ss_pred CCCCCEEEcccCc-CccccchhhhhccCCCCeEeecCCC
Q 006793 494 SSKLQLVLLNNNL-LEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 494 l~~L~~L~ls~N~-l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
+++|+.|++++|. +++..+..+..+. +|+.|++++|.
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~ 258 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRCY 258 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTCT
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCC-CCCEeeCCCCC
Confidence 9999999999999 7778888887774 89999999986
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.42 E-value=4.1e-08 Score=103.26 Aligned_cols=106 Identities=21% Similarity=0.179 Sum_probs=89.5
Q ss_pred EEEecCCCCcccCchhhcccccccccccccccCCCCCC----Ccccc-c-cccccccccccCCCCCCccCCCC-----CC
Q 006793 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP----SGLGQ-Q-SLVRLDLSDNQFTGSIPDSLTSS-----SK 496 (631)
Q Consensus 428 ~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP----~~~~~-~-~L~~L~Ls~N~l~g~iP~~l~~l-----~~ 496 (631)
.++|+.|.++|.+|..+...++|+.|+|++|.+++..+ ..+.. + +|+.|+|++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 36789999999999988888889999999999996555 45555 6 89999999999998878777775 89
Q ss_pred CCEEEcccCcCccccchhhhhcc----CCCCeEeecCCCCC
Q 006793 497 LQLVLLNNNLLEGRVPEELYSIG----VHGGAFDLSGNKGL 533 (631)
Q Consensus 497 L~~L~ls~N~l~g~iP~~l~~~~----~~L~~l~l~~N~~l 533 (631)
|++|+|++|++++..+..+.... .+|+.|++++|.+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 99999999999988777665541 48999999999854
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=2.3e-07 Score=92.98 Aligned_cols=96 Identities=23% Similarity=0.192 Sum_probs=69.3
Q ss_pred EEecCCCC---cccCchhhcccccccccccccccCCC--CCCCcccc-ccccccccccccCCCCCCccCCCCC--CCCEE
Q 006793 429 IDLGSQGL---KGYISDKISLLSNLVNLNLSTNSLGG--TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS--KLQLV 500 (631)
Q Consensus 429 L~Ls~n~l---~g~~p~~~~~l~~L~~L~Ls~N~l~g--~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L 500 (631)
++++.|.. .+.++....++++|+.|+|++|+|++ .+|..+.. ++|+.|+|++|+|++. ..+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 45566633 23333334578899999999999997 56676777 9999999999999864 3444444 89999
Q ss_pred EcccCcCccccch------hhhhccCCCCeEe
Q 006793 501 LLNNNLLEGRVPE------ELYSIGVHGGAFD 526 (631)
Q Consensus 501 ~ls~N~l~g~iP~------~l~~~~~~L~~l~ 526 (631)
+|++|.+++.+|. .+....++|+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 9999999988873 2344445777765
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.22 E-value=5.9e-08 Score=105.10 Aligned_cols=110 Identities=20% Similarity=0.141 Sum_probs=70.3
Q ss_pred eEEEEEEecCCCCccc----CchhhcccccccccccccccCCCCCCCcccc------ccccccccccccCCCC----CCc
Q 006793 424 VVISQIDLGSQGLKGY----ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGS----IPD 489 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~------~~L~~L~Ls~N~l~g~----iP~ 489 (631)
..|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++..+..+.. ++|+.|+|++|.+++. +|.
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 3467777777777753 5666777777777777777776433322221 3677777777777654 455
Q ss_pred cCCCCCCCCEEEcccCcCccccchhhhhc----cCCCCeEeecCCCCC
Q 006793 490 SLTSSSKLQLVLLNNNLLEGRVPEELYSI----GVHGGAFDLSGNKGL 533 (631)
Q Consensus 490 ~l~~l~~L~~L~ls~N~l~g~iP~~l~~~----~~~L~~l~l~~N~~l 533 (631)
.+..+++|+.|++++|++++..+..+... ..+|+.|++++|.+.
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 56666777777777777765555544431 236677777777643
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.14 E-value=1.9e-07 Score=98.63 Aligned_cols=106 Identities=19% Similarity=0.215 Sum_probs=60.8
Q ss_pred EEEEEEecCCCCcccCchh-hcccccccccccccccCCCCCCCccc-----c-ccccccccccccCCC----CCCccCCC
Q 006793 425 VISQIDLGSQGLKGYISDK-ISLLSNLVNLNLSTNSLGGTLPSGLG-----Q-QSLVRLDLSDNQFTG----SIPDSLTS 493 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~-~~~l~~L~~L~Ls~N~l~g~iP~~~~-----~-~~L~~L~Ls~N~l~g----~iP~~l~~ 493 (631)
.|+.|+|++|.++..-... ...+++|+.|+|++|.++..-...+. . .+|+.|+|++|.++. .++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 4777777777775432222 23456677777777777633222221 2 557777777777653 23444455
Q ss_pred CCCCCEEEcccCcCccc----cchhhhhccCCCCeEeecCCC
Q 006793 494 SSKLQLVLLNNNLLEGR----VPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 494 l~~L~~L~ls~N~l~g~----iP~~l~~~~~~L~~l~l~~N~ 531 (631)
+++|++|+|++|.++.. ++..+.... .|+.|++++|.
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~ 222 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNG 222 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSC
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCC
Confidence 66777777777777632 223333332 56777777665
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.12 E-value=1.4e-07 Score=102.06 Aligned_cols=108 Identities=22% Similarity=0.203 Sum_probs=70.7
Q ss_pred eEEEEEEecCCCCcccCchhhc-ccc----cccccccccccCCC----CCCCcccc-ccccccccccccCCCCCCccCC-
Q 006793 424 VVISQIDLGSQGLKGYISDKIS-LLS----NLVNLNLSTNSLGG----TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT- 492 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~-~l~----~L~~L~Ls~N~l~g----~iP~~~~~-~~L~~L~Ls~N~l~g~iP~~l~- 492 (631)
.+|+.|+|++|.++...+..+. .+. +|++|+|++|.++. .+|..+.. ++|+.|+|++|.+++..+..+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 3477788888887754444333 344 58888888888773 45666666 7788888888877644333222
Q ss_pred ----CCCCCCEEEcccCcCcccc----chhhhhccCCCCeEeecCCCC
Q 006793 493 ----SSSKLQLVLLNNNLLEGRV----PEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 493 ----~l~~L~~L~ls~N~l~g~i----P~~l~~~~~~L~~l~l~~N~~ 532 (631)
.+++|++|++++|++++.. +..+..+. +|+.|++++|.+
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i 182 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP-DFKELTVSNNDI 182 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT-TCCEEECCSSBC
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC-CCCEEECcCCCc
Confidence 2457888888888887643 33343333 778888888874
No 140
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.01 E-value=1.9e-06 Score=90.03 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=69.2
Q ss_pred EEEEEEecC-CCCcccCchhhcccc-cccccccccccCCCCCCCcccc-ccccccccccccCCCCCCc-cCCCCCCCCEE
Q 006793 425 VISQIDLGS-QGLKGYISDKISLLS-NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD-SLTSSSKLQLV 500 (631)
Q Consensus 425 ~l~~L~Ls~-n~l~g~~p~~~~~l~-~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L 500 (631)
++..|++.+ +.+....+..+..+. .++.|+|++|+|+ .||..... .+|+.|++++|+..+.+|. .|.++++|+.|
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred hhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence 355666654 455543344555554 5777888888888 67776666 7788888875443336765 46778888888
Q ss_pred EcccCcCccccchhhhhccCCCCeEeecCCCCCCCCC
Q 006793 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAP 537 (631)
Q Consensus 501 ~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc~~p 537 (631)
||++|+|+ .+|...+ .+|+.|.+.++..+...|
T Consensus 208 dLs~N~l~-~lp~~~~---~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 208 DISRTRIH-SLPSYGL---ENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp ECTTSCCC-CCCSSSC---TTCCEEECTTCTTCCCCC
T ss_pred hcCCCCcC-ccChhhh---ccchHhhhccCCCcCcCC
Confidence 88888887 6665432 245666666655444443
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.98 E-value=6.7e-07 Score=94.48 Aligned_cols=108 Identities=18% Similarity=0.128 Sum_probs=79.2
Q ss_pred EEEEEEecCCCCcccCchhhc-----ccccccccccccccCCCC----CCCcccc-ccccccccccccCCCC----CCcc
Q 006793 425 VISQIDLGSQGLKGYISDKIS-----LLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDS 490 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~-----~l~~L~~L~Ls~N~l~g~----iP~~~~~-~~L~~L~Ls~N~l~g~----iP~~ 490 (631)
+|+.|+|++|.|+..-...+. ..+.|+.|+|++|.++.. ++..+.. ++|+.|+|++|.++.. ++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 488999999999754444442 357899999999998742 3444455 7899999999998742 3556
Q ss_pred CCCCCCCCEEEcccCcCcccc----chhhhhccCCCCeEeecCCCCC
Q 006793 491 LTSSSKLQLVLLNNNLLEGRV----PEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 491 l~~l~~L~~L~ls~N~l~g~i----P~~l~~~~~~L~~l~l~~N~~l 533 (631)
+..+++|+.|+|++|.++..- ...+... +.|+.|++++|++.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~-~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREH-PSLELLHLYFNELS 252 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHC-SSCCEEECTTSSCC
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhC-CCCCEEeccCCCCC
Confidence 677789999999999997532 3333333 47899999999853
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=1.7e-06 Score=86.58 Aligned_cols=76 Identities=25% Similarity=0.224 Sum_probs=64.4
Q ss_pred eEEEEEEecCCCCcc--cCchhhcccccccccccccccCCCCCCCcccc-c--cccccccccccCCCCCCc-------cC
Q 006793 424 VVISQIDLGSQGLKG--YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q--SLVRLDLSDNQFTGSIPD-------SL 491 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g--~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~--~L~~L~Ls~N~l~g~iP~-------~l 491 (631)
+.|+.|+|++|.|++ .+|..+..+++|+.|+|++|+|++. ..+.. . +|+.|+|++|.+++.+|. .+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 458999999999998 6678889999999999999999954 44555 5 899999999999988874 25
Q ss_pred CCCCCCCEEE
Q 006793 492 TSSSKLQLVL 501 (631)
Q Consensus 492 ~~l~~L~~L~ 501 (631)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 6788999886
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=3.4e-06 Score=87.24 Aligned_cols=26 Identities=8% Similarity=-0.011 Sum_probs=23.2
Q ss_pred hhhhccCCchhhhHHHhhhccCCCCC
Q 006793 601 RNRYQRQKSLMLLEMESQHAKGLPTL 626 (631)
Q Consensus 601 ~~~~~~~~~l~~ldl~~n~~~~~p~~ 626 (631)
..+|..+.+|+.++|+.|+++.++.+
T Consensus 290 ~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp TTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred hhhhhCCccCCEEEeCCCccCccchh
Confidence 67899999999999999999888865
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.82 E-value=1.8e-06 Score=96.42 Aligned_cols=110 Identities=10% Similarity=0.005 Sum_probs=80.3
Q ss_pred eEEEEEEec----CCCCccc-----Cchhhcccccccccccccc--cCCCCCCCcccc--ccccccccccccCCC-CCCc
Q 006793 424 VVISQIDLG----SQGLKGY-----ISDKISLLSNLVNLNLSTN--SLGGTLPSGLGQ--QSLVRLDLSDNQFTG-SIPD 489 (631)
Q Consensus 424 ~~l~~L~Ls----~n~l~g~-----~p~~~~~l~~L~~L~Ls~N--~l~g~iP~~~~~--~~L~~L~Ls~N~l~g-~iP~ 489 (631)
++|+.|+|+ .|.+++. ++..+.++++|+.|+|+.+ .+++..+..+.. ++|+.|+|++|++++ .++.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence 347777775 6677753 4455677888888888743 366555555554 789999999999886 4566
Q ss_pred cCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCC
Q 006793 490 SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 533 (631)
Q Consensus 490 ~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~l 533 (631)
.+..+++|+.|+|++|.+++.....+....++|+.|++++|+..
T Consensus 483 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 66788999999999999986644444444458999999999844
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.73 E-value=3.7e-06 Score=79.53 Aligned_cols=107 Identities=14% Similarity=0.195 Sum_probs=79.4
Q ss_pred EEEEEEecCC-CCcc----cCchhhcccccccccccccccCCCC----CCCcccc-ccccccccccccCCCC----CCcc
Q 006793 425 VISQIDLGSQ-GLKG----YISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDS 490 (631)
Q Consensus 425 ~l~~L~Ls~n-~l~g----~~p~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~-~~L~~L~Ls~N~l~g~----iP~~ 490 (631)
.|+.|+|++| .+.. .+...+...++|++|+|++|.+... +...+.. ++|+.|+|++|.+... +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 3788999999 8874 3455667778999999999998743 3333444 7899999999999753 4566
Q ss_pred CCCCCCCCEEEc--ccCcCccccchhhhhc---cCCCCeEeecCCC
Q 006793 491 LTSSSKLQLVLL--NNNLLEGRVPEELYSI---GVHGGAFDLSGNK 531 (631)
Q Consensus 491 l~~l~~L~~L~l--s~N~l~g~iP~~l~~~---~~~L~~l~l~~N~ 531 (631)
+...++|++|+| ++|.++..--..+... ...|+.|++++|.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 777889999999 8899975433223222 2478899998776
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.47 E-value=7.3e-05 Score=77.15 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=67.3
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCc-ccc-cccc-ccccccccCCCCCCccCCCCCCCCEEE
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLV-RLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~-~~L~-~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (631)
.|+.|+|++|.++..-+..|.++++|+.|+|++| ++ .|++. +.. .+|+ .+++++ +++..-+..|.+|++|+.|+
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 3677888888887555557888888888888877 66 56654 344 7787 888877 56533356778888888888
Q ss_pred cccCcCccccchhhhhccCCCCeEe
Q 006793 502 LNNNLLEGRVPEELYSIGVHGGAFD 526 (631)
Q Consensus 502 ls~N~l~g~iP~~l~~~~~~L~~l~ 526 (631)
+++|+++ .|+...+....+|+.+.
T Consensus 304 l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred eCCCccC-ccchhhhcCCcchhhhc
Confidence 8888887 55555444444565554
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.38 E-value=8.7e-06 Score=90.87 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=44.1
Q ss_pred EEEEEecCCCCcccCchhhc-ccccccccccc--c----ccCCCCCCC------cccc-ccccccccccccCCCCCCccC
Q 006793 426 ISQIDLGSQGLKGYISDKIS-LLSNLVNLNLS--T----NSLGGTLPS------GLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~-~l~~L~~L~Ls--~----N~l~g~iP~------~~~~-~~L~~L~Ls~N~l~g~iP~~l 491 (631)
|+.|+++.|.+++.....+. .+++|+.|+|+ + |.++ ..|. .+.. ++|+.|+|++ .+++..+..+
T Consensus 374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 44445555555544333333 35555555555 2 3333 1111 1222 4455555544 3333323333
Q ss_pred CC-CCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCC
Q 006793 492 TS-SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 492 ~~-l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
+. +++|+.|+|++|.+++..+..+....++|+.|++++|+
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 32 44455555555555443333332222345555555554
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.24 E-value=3.7e-05 Score=85.75 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=14.9
Q ss_pred EEEEEecCCCCcccCchhhc-ccccccccccccc
Q 006793 426 ISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTN 458 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~-~l~~L~~L~Ls~N 458 (631)
|+.|+|++|.+++..+..+. .+++|+.|+|++|
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 44444444444444333333 3444444444444
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.22 E-value=0.00015 Score=80.79 Aligned_cols=57 Identities=19% Similarity=0.134 Sum_probs=34.1
Q ss_pred ccccccccccccCCCCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeec
Q 006793 471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 528 (631)
Q Consensus 471 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~ 528 (631)
++|+.|+++++. .+.+|..+..+++|+.|+|++|.+++.....+....++|+.|+++
T Consensus 270 ~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 270 RKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 445555555532 234666666677777777777776655444433444467777776
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.04 E-value=0.00071 Score=59.81 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=36.8
Q ss_pred ccccccccCC-CCCCccCCCCCCCCEEEcccCcCccccchhhhhccCCCCeEeecCCCCCC
Q 006793 475 RLDLSDNQFT-GSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 534 (631)
Q Consensus 475 ~L~Ls~N~l~-g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~lc 534 (631)
.++-++++|+ ..+|..+. .+|+.|+|++|+|+ .+|...+....+|+.|+|++|++.|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCeec
Confidence 3455555554 24554432 35777777777777 5666655555577788888888887
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.85 E-value=5.8e-05 Score=71.20 Aligned_cols=84 Identities=15% Similarity=0.254 Sum_probs=66.1
Q ss_pred EEEEEEecCCCCcc----cCchhhcccccccccccccccCCCC----CCCcccc-cccccccc--ccccCCCC----CCc
Q 006793 425 VISQIDLGSQGLKG----YISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDL--SDNQFTGS----IPD 489 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g----~~p~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~-~~L~~L~L--s~N~l~g~----iP~ 489 (631)
.|+.|+|++|.+.. .+...+...+.|++|+|++|.++.. +...+.. ++|+.|+| ++|.+... +-.
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~ 145 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence 37889999999974 3455666678999999999999853 4455666 88999999 88998753 334
Q ss_pred cCCCCCCCCEEEcccCcCc
Q 006793 490 SLTSSSKLQLVLLNNNLLE 508 (631)
Q Consensus 490 ~l~~l~~L~~L~ls~N~l~ 508 (631)
.+...++|+.|+|++|.+.
T Consensus 146 ~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEeccCCCCC
Confidence 4556689999999999985
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.67 E-value=0.00019 Score=75.13 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=52.1
Q ss_pred EEEEEEecCCCCcccCchhhc--cccccccccccc--ccCCCC-----CCCccc--c-ccccccccccccCCCCCCccCC
Q 006793 425 VISQIDLGSQGLKGYISDKIS--LLSNLVNLNLST--NSLGGT-----LPSGLG--Q-QSLVRLDLSDNQFTGSIPDSLT 492 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~--~l~~L~~L~Ls~--N~l~g~-----iP~~~~--~-~~L~~L~Ls~N~l~g~iP~~l~ 492 (631)
+|+.|+|..+.+....-..+. .+++|+.|+|+. |...|. +...+. . ++|+.|+|++|.+....+..+.
T Consensus 194 ~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la 273 (362)
T 2ra8_A 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273 (362)
T ss_dssp TCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH
T ss_pred CCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH
Confidence 356666666665533333333 566677666642 221111 111111 2 5667777766666533222221
Q ss_pred ---CCCCCCEEEcccCcCccc----cchhhhhccCCCCeEeecCCC
Q 006793 493 ---SSSKLQLVLLNNNLLEGR----VPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 493 ---~l~~L~~L~ls~N~l~g~----iP~~l~~~~~~L~~l~l~~N~ 531 (631)
.+++|++|+|+.|.+++. ++..+..+ ++|+.|++++|.
T Consensus 274 ~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l-~~L~~L~L~~n~ 318 (362)
T 2ra8_A 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKI-KHLKFINMKYNY 318 (362)
T ss_dssp HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHH-TTCSEEECCSBB
T ss_pred hCccCCCCCEEECCCCCCChHHHHHHHhhcccC-CcceEEECCCCc
Confidence 356677777777766643 22222222 356666666554
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.53 E-value=0.0019 Score=68.55 Aligned_cols=25 Identities=4% Similarity=0.069 Sum_probs=20.8
Q ss_pred hhhhccCCchhhhHHHhhhccCCCCC
Q 006793 601 RNRYQRQKSLMLLEMESQHAKGLPTL 626 (631)
Q Consensus 601 ~~~~~~~~~l~~ldl~~n~~~~~p~~ 626 (631)
..+|... +|+.++|+.|....++..
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccc
Confidence 5788888 999999999988777654
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.80 E-value=0.0012 Score=61.35 Aligned_cols=83 Identities=16% Similarity=0.140 Sum_probs=54.6
Q ss_pred eEEEEEEecCCCCcccCchhhccccccccccccccc-CCCCCCCcccc-----cccccccccccc-CCCCCCccCCCCCC
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-----QSLVRLDLSDNQ-FTGSIPDSLTSSSK 496 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~-l~g~iP~~~~~-----~~L~~L~Ls~N~-l~g~iP~~l~~l~~ 496 (631)
..|+.|||+++.++..--..+.++++|+.|+|+++. ++..-=..+.. ++|+.|+|+++. ++..==..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 359999999999875544567889999999999985 55321111221 257888888764 54321123556777
Q ss_pred CCEEEcccCc
Q 006793 497 LQLVLLNNNL 506 (631)
Q Consensus 497 L~~L~ls~N~ 506 (631)
|+.|+|++..
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777654
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.72 E-value=0.0034 Score=65.60 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=71.2
Q ss_pred eEEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCccc--c-cccccccccc--ccCCCC-----CCccC--
Q 006793 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG--Q-QSLVRLDLSD--NQFTGS-----IPDSL-- 491 (631)
Q Consensus 424 ~~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~--~-~~L~~L~Ls~--N~l~g~-----iP~~l-- 491 (631)
+.|+.|+|++|.-. .+++ + .+++|+.|+|..+.++...-..+. . ++|+.|+|+. |...|. +-..+
T Consensus 172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 45889999887311 2343 4 388999999998877643333333 4 8899999863 332222 11122
Q ss_pred CCCCCCCEEEcccCcCccccchhhhh--ccCCCCeEeecCCCC
Q 006793 492 TSSSKLQLVLLNNNLLEGRVPEELYS--IGVHGGAFDLSGNKG 532 (631)
Q Consensus 492 ~~l~~L~~L~ls~N~l~g~iP~~l~~--~~~~L~~l~l~~N~~ 532 (631)
..+++|++|+|++|.++...+..++. ..++|+.|+++.|.+
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 24789999999999998766655553 335789999998874
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.70 E-value=0.0098 Score=52.34 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=24.0
Q ss_pred ccccccccccccCCCCCCc-cCCCCCCCCEEEcccCcCc
Q 006793 471 QSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLLNNNLLE 508 (631)
Q Consensus 471 ~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~ls~N~l~ 508 (631)
.+|+.|+|++|+|+ .+|. .|..+++|+.|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 34566666666666 3433 4566777888888888775
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.89 E-value=0.0053 Score=58.12 Aligned_cols=103 Identities=11% Similarity=0.108 Sum_probs=65.1
Q ss_pred EEEEEecCC-CCcc----cCchhhcccccccccccccccCCCCCCC----cccc-ccccccccccccCCCC----CCccC
Q 006793 426 ISQIDLGSQ-GLKG----YISDKISLLSNLVNLNLSTNSLGGTLPS----GLGQ-QSLVRLDLSDNQFTGS----IPDSL 491 (631)
Q Consensus 426 l~~L~Ls~n-~l~g----~~p~~~~~l~~L~~L~Ls~N~l~g~iP~----~~~~-~~L~~L~Ls~N~l~g~----iP~~l 491 (631)
|+.|+|++| .+.. .+-..+..=+.|+.|+|++|.+...--. .+.. +.|+.|+|++|++... +-+.+
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL 122 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST 122 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH
Confidence 778999985 7753 2445566667899999999998743222 2334 7899999999988742 22335
Q ss_pred CCCCCCCEEEcccC---cCccccc----hhhhhccCCCCeEeecC
Q 006793 492 TSSSKLQLVLLNNN---LLEGRVP----EELYSIGVHGGAFDLSG 529 (631)
Q Consensus 492 ~~l~~L~~L~ls~N---~l~g~iP----~~l~~~~~~L~~l~l~~ 529 (631)
..-+.|+.|+|++| .+..... ..+... ..|..|+++.
T Consensus 123 ~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~ 166 (197)
T 1pgv_A 123 LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISF 166 (197)
T ss_dssp TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCC
T ss_pred hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccC
Confidence 55567999999865 4443222 222222 3566666643
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.62 E-value=0.024 Score=59.98 Aligned_cols=102 Identities=12% Similarity=0.177 Sum_probs=72.3
Q ss_pred EEEEEecCCCCcccCchhhcccccccccccccccCCC----CCCCc-ccc-ccccccccccccCCCCCCccCCCCCCCCE
Q 006793 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG----TLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g----~iP~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~ 499 (631)
|+.+.| .+.++..-...|.++++|+.+++.+|.+.. .|+.. +.. .+|+.++|.+ .++-.-...|.+|.+|+.
T Consensus 250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence 566777 455664456688899999999998887651 24444 444 8899999984 466333456888899999
Q ss_pred EEcccCcCccccchhhhhccCCCCeEeecCCCC
Q 006793 500 VLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKG 532 (631)
Q Consensus 500 L~ls~N~l~g~iP~~l~~~~~~L~~l~l~~N~~ 532 (631)
++|..| ++ .|+...+... +|+.+.+.+|..
T Consensus 328 l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 328 LTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp EEECTT-CC-EECTTSSSSS-CCCEEEECCSSC
T ss_pred EEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCC
Confidence 999655 55 6666666555 789999988863
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=93.09 E-value=0.016 Score=53.71 Aligned_cols=85 Identities=8% Similarity=0.010 Sum_probs=56.3
Q ss_pred ccccccccccccCCCCCCCcccc-cccccccccccc-CCCCCCccCCCC----CCCCEEEcccCc-CccccchhhhhccC
Q 006793 448 SNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQ-FTGSIPDSLTSS----SKLQLVLLNNNL-LEGRVPEELYSIGV 520 (631)
Q Consensus 448 ~~L~~L~Ls~N~l~g~iP~~~~~-~~L~~L~Ls~N~-l~g~iP~~l~~l----~~L~~L~ls~N~-l~g~iP~~l~~~~~ 520 (631)
-.|+.|||+++.++..--..+.. ++|+.|+|+++. ++..-=..++.+ ++|+.|+|+++. ++..-=..+..+ +
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~-~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-R 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC-T
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC-C
Confidence 46899999999887543344556 889999999985 553211224443 369999999874 763222344444 5
Q ss_pred CCCeEeecCCCCC
Q 006793 521 HGGAFDLSGNKGL 533 (631)
Q Consensus 521 ~L~~l~l~~N~~l 533 (631)
+|+.|++++.+.+
T Consensus 140 ~L~~L~L~~c~~I 152 (176)
T 3e4g_A 140 NLKYLFLSDLPGV 152 (176)
T ss_dssp TCCEEEEESCTTC
T ss_pred CCCEEECCCCCCC
Confidence 8899999876533
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.51 E-value=0.045 Score=51.67 Aligned_cols=89 Identities=12% Similarity=0.190 Sum_probs=59.5
Q ss_pred hhcccccccccccccc-cCCCC----CCCcccc-ccccccccccccCCCC----CCccCCCCCCCCEEEcccCcCccccc
Q 006793 443 KISLLSNLVNLNLSTN-SLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLEGRVP 512 (631)
Q Consensus 443 ~~~~l~~L~~L~Ls~N-~l~g~----iP~~~~~-~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~ls~N~l~g~iP 512 (631)
.+.+-+.|+.|+|++| .+... +-..+.. ..|+.|+|++|++... |-+.+..-+.|+.|+|+.|+++..--
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3444578999999986 66521 2333445 8899999999998732 22234445789999999999984433
Q ss_pred hhhhhc---cCCCCeEeecCCC
Q 006793 513 EELYSI---GVHGGAFDLSGNK 531 (631)
Q Consensus 513 ~~l~~~---~~~L~~l~l~~N~ 531 (631)
..+.+. ...|+.|+|++|.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHhhCCceeEEECCCCc
Confidence 333321 2358899998654
No 161
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=88.05 E-value=11 Score=32.99 Aligned_cols=93 Identities=13% Similarity=0.097 Sum_probs=55.4
Q ss_pred CCCceEEeecCCCcceEEEEEeecCCCCCCCCCCceEEEECCEEEeecCCCCccccCCCceEEEEEEEeeCCeeeEEEee
Q 006793 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS 166 (631)
Q Consensus 87 g~~~cY~~pv~~~g~ylvRl~F~y~nyd~~~~~~~Fdv~i~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~~ 166 (631)
|..-.|++.+.+.|.|.|++.+.-+.. ..+.++|++||..+......-.+..-..-......+....+.=.|.|..
T Consensus 39 g~~v~~~V~v~~aG~Y~l~~ryan~~~----~~~~~~l~VNG~~~~~~v~~p~Tg~w~~w~~~~~~v~L~aG~ntI~l~~ 114 (144)
T 2w47_A 39 GGYIEWNVNAPSSGSYALIFRYANGTT----ANRPMRITVNGNIVKPSMDFVSTGAWTTWNEAGIVANLNQGNNVIRATA 114 (144)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCSS----SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCCC----CCeEEEEEECCeEeeeEEEecCCCCCCeeEEEEEEEEECCCccEEEEEE
Confidence 455688998878899999998875432 2578999999976422222211111011111122234455554556653
Q ss_pred c-CCCCceeeeEEEEEcC
Q 006793 167 F-ATDPPVIASLEVQQID 183 (631)
Q Consensus 167 ~-~~~~pfIn~iEl~~l~ 183 (631)
. +.+.|.|.-|+|.+.+
T Consensus 115 ~~~~g~~niD~i~v~~~~ 132 (144)
T 2w47_A 115 IASDGGPNVDYLKVFSAN 132 (144)
T ss_dssp CSTTCCCEEEEEEEEECT
T ss_pred eCCCCCEEEeEEEEEeCC
Confidence 3 3457999999998765
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.03 E-value=0.83 Score=47.62 Aligned_cols=100 Identities=15% Similarity=0.327 Sum_probs=62.2
Q ss_pred EEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCcc-cc-ccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~-~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
|+.+.+..+-.. .-...|.++..|+.+.+. +.++ .|++.. .. .+|+.++|..+ ++-.-..+|.+|.+|+.+.+.
T Consensus 267 L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 267 LASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp CCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred ccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 445555443322 333456777788888775 4455 565543 33 77888888764 442223467788888888886
Q ss_pred cCcCccccchhhhhccCCCCeEeecCCC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSGNK 531 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~N~ 531 (631)
.+ ++ .|....+....+|+.+++.+|.
T Consensus 343 ~s-v~-~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 343 SS-VT-KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred cc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence 54 55 6666666555578888877664
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=85.38 E-value=0.8 Score=47.28 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=58.0
Q ss_pred EEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCc-ccc-ccccccccccccCCCCCCccCCCCCCCCEEEcc
Q 006793 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls 503 (631)
|+.+.+..+ ++..-...+.++.+|+.+.+..+ +. .++.. +.. .+|+.+.+.++.++-.-...|.++.+|+.+.|.
T Consensus 242 L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 242 LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 445555443 43233445667777777777543 44 45544 333 778888887777763234467777888888876
Q ss_pred cCcCccccchhhhhccCCCCeEeecC
Q 006793 504 NNLLEGRVPEELYSIGVHGGAFDLSG 529 (631)
Q Consensus 504 ~N~l~g~iP~~l~~~~~~L~~l~l~~ 529 (631)
.+ ++ .|....+....+|+.+.+..
T Consensus 319 ~~-l~-~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 319 TA-LK-TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred cc-cc-EEHHHHhhCCCCCCEEEECC
Confidence 54 44 55555444444666666543
No 164
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=82.49 E-value=20 Score=30.43 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=51.2
Q ss_pred CCCCceEEeecCCCcceEEEEEeecCCCCCCCCCCceEEEECCEEEeecCCCCccccCCCceEEEEEEEeeCCeeeEEEe
Q 006793 86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFY 165 (631)
Q Consensus 86 ~g~~~cY~~pv~~~g~ylvRl~F~y~nyd~~~~~~~Fdv~i~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~ 165 (631)
.|..-.|++.+.+.|.|.|++.+.-+.. ..+.++|++||.........-.+..-..-.-....+....+.=.|.|.
T Consensus 37 ~g~~v~~~V~v~~aG~Y~l~~rya~~~~----~~~~~~l~VnG~~~~~~v~~p~tg~W~~w~~~~~~v~L~aG~ntI~l~ 112 (127)
T 2vzp_A 37 AGSSVEWTVTVPSAGTYDVVVRYANGTT----TSRPLDFSVNGSISASGVAFGSTGTWPAWTTKTVRVTLAAGVNKIKAV 112 (127)
T ss_dssp TTCEEEEEEEESSSEEEEEEEEEECCSS----SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred CCCEEEEEEEcCCCCEEEEEEEEEcCCC----CCeEEEEEECCEEeeeEEEecCCCCCCceEEEEEEEEECCCceEEEEE
Confidence 3555689998877899999998875431 257899999997643212221111101111112223345555455555
Q ss_pred ec-CCCCceeeeEEE
Q 006793 166 SF-ATDPPVIASLEV 179 (631)
Q Consensus 166 ~~-~~~~pfIn~iEl 179 (631)
.. +.+.|-|.-|+|
T Consensus 113 ~~~~~~~~niD~i~v 127 (127)
T 2vzp_A 113 ATTANGGPNVDKITL 127 (127)
T ss_dssp ECSTTCCCEEEEEEC
T ss_pred EeCCCCCeEEEEEEC
Confidence 43 345677877764
No 165
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=80.82 E-value=23 Score=31.08 Aligned_cols=92 Identities=11% Similarity=-0.021 Sum_probs=53.5
Q ss_pred CCCceEEeecCCCcceEEEEEeecCCCCCCCCCCceEEEECCEEEeecCCCCccccCCCceEEEEEEEeeCCeeeEEEee
Q 006793 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS 166 (631)
Q Consensus 87 g~~~cY~~pv~~~g~ylvRl~F~y~nyd~~~~~~~Fdv~i~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~~ 166 (631)
|..-.|++.+.+.|.|.|++.+.-+.. ..+.++|++||...-. ...-.+..-..-.-..+.+....+.=.|.|..
T Consensus 38 G~~v~~~V~v~~aG~Y~l~~ryang~~----~~r~~~l~VNG~~~~~-v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~~ 112 (145)
T 2w3j_A 38 GASIVWSLSAASAKTYTAQIRFGNGGT----SARRATVVVNDSQIKT-LDFPTNSNWTQWQTVNVDIPLKAGTNSIKLVA 112 (145)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCSS----SCCCEEEEETTEEEEE-ECCCCCSCTTSCEEEEEEEEECSEEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEEEEEEECCCC----CCeEEEEEECCeEeeE-EEecCCCCCCeeEEEEEEEEECCCceEEEEEE
Confidence 445588888877899999988863322 2578999999976422 11111111011111122333455554555554
Q ss_pred c-CCCCceeeeEEEEEcC
Q 006793 167 F-ATDPPVIASLEVQQID 183 (631)
Q Consensus 167 ~-~~~~pfIn~iEl~~l~ 183 (631)
. +.+.|-|.-|+|.+.+
T Consensus 113 ~~~~g~~niD~i~v~~~~ 130 (145)
T 2w3j_A 113 ETADGLANIDSIRVTGNG 130 (145)
T ss_dssp CSTTCCCEEEEEEECSTT
T ss_pred ecCcCCEEEEEEEEEcCC
Confidence 3 3467999999986544
No 166
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=79.79 E-value=2.2 Score=29.38 Aligned_cols=8 Identities=25% Similarity=0.114 Sum_probs=3.0
Q ss_pred HHHHhhcC
Q 006793 575 YICCIRRG 582 (631)
Q Consensus 575 ~~~~~~r~ 582 (631)
+++++||+
T Consensus 32 ~~~~RRr~ 39 (44)
T 2ks1_B 32 GLFMRRRH 39 (44)
T ss_dssp HHHHHTTT
T ss_pred HHHhhhhH
Confidence 33333333
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=77.13 E-value=1.6 Score=45.29 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=35.9
Q ss_pred hcccccccccccccccCCCCCCCc-ccc-ccccccccccccCCCCC-CccCCCCCCCCEEEcccCcCccccchhhhhccC
Q 006793 444 ISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSI-PDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGV 520 (631)
Q Consensus 444 ~~~l~~L~~L~Ls~N~l~g~iP~~-~~~-~~L~~L~Ls~N~l~g~i-P~~l~~l~~L~~L~ls~N~l~g~iP~~l~~~~~ 520 (631)
+..+.+|+.+.+..+ ++ .|++. +.. .+|+.++|.++ ++ .| ..+|.+|.+|+.+++..| ++ .|+...+....
T Consensus 293 F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~ 366 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCI 366 (394)
T ss_dssp TTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCT
T ss_pred ccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCC
Confidence 444555555555433 33 33332 233 55555555433 33 22 234555555655555544 33 34444333333
Q ss_pred CCCeEeec
Q 006793 521 HGGAFDLS 528 (631)
Q Consensus 521 ~L~~l~l~ 528 (631)
+|+.+++.
T Consensus 367 ~L~~i~lp 374 (394)
T 4fs7_A 367 NLKKVELP 374 (394)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEC
Confidence 45555553
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=75.59 E-value=2.2 Score=44.31 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=56.1
Q ss_pred EEEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCc-ccc-ccccccccccccCCCCCCccCCCCCCCCEEEc
Q 006793 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (631)
Q Consensus 425 ~l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~l 502 (631)
.|+.+.+..+ ++..-...|.++.+|+.++|..+ ++ .|.+. +.. .+|+.+++..| ++-.-..+|.+|.+|+.+++
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 3666777544 55344557889999999999754 66 66554 555 89999999877 65333457899999999998
Q ss_pred ccC
Q 006793 503 NNN 505 (631)
Q Consensus 503 s~N 505 (631)
..+
T Consensus 374 p~~ 376 (394)
T 4fs7_A 374 PKR 376 (394)
T ss_dssp EGG
T ss_pred CCC
Confidence 755
No 169
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=75.20 E-value=1.8 Score=44.97 Aligned_cols=77 Identities=10% Similarity=0.258 Sum_probs=56.6
Q ss_pred EEEEEecCCCCcccCchhhcccccccccccccccCCCCCCCc-ccc-ccccccccccccCCCCCC-ccCCCCCCCCEEEc
Q 006793 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLL 502 (631)
Q Consensus 426 l~~L~Ls~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~-~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~l 502 (631)
|+.+.+. +.++..-...|.++.+|+.++|..+ ++ .|.+. +.. .+|+.+.|..+ ++ .|. .+|.+|++|+.+++
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEY 364 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEE
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEE
Confidence 5666664 4455344457889999999999764 66 56554 555 89999999765 55 454 47899999999999
Q ss_pred ccCcC
Q 006793 503 NNNLL 507 (631)
Q Consensus 503 s~N~l 507 (631)
.+|..
T Consensus 365 ~~~~~ 369 (394)
T 4gt6_A 365 SGSRS 369 (394)
T ss_dssp SSCHH
T ss_pred CCcee
Confidence 98754
No 170
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=73.40 E-value=19 Score=32.10 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=52.1
Q ss_pred ceEE-eecCCCcceEEEEEeecCCC------CCCCCCCceEEEECCEEEee-cCC---CCccccCCCceEEEEEEEeeCC
Q 006793 90 NCYI-IPNLPPGRYYIRTFTVYDNY------DGKSHSPSFDVSVEGTLVFS-WRS---PWPEGLARDGAYSDLFAFVKDG 158 (631)
Q Consensus 90 ~cY~-~pv~~~g~ylvRl~F~y~ny------d~~~~~~~Fdv~i~~~~~l~-~~~---~~~~~~~~~~~~~e~i~~~~~~ 158 (631)
-.|+ +.+.+.|.|.|++.|.-+.. ......+..+|++||...-. .|. .|.+ ..-..+.+....+
T Consensus 49 vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~fp~Tg~W~~-----~~~~tv~V~L~aG 123 (156)
T 2wz8_A 49 LQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYFFNTRGWNT-----YRTDIIDVYLNAG 123 (156)
T ss_dssp EEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEEECCCSSTTC-----CEEEEEEEEECSE
T ss_pred EEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEEeCCCCCCCc-----ceEEEEEEEECCC
Confidence 3677 77767899999999865532 11113578999998753111 121 1221 1112223345666
Q ss_pred eeeEEEeec--CCCCceeeeEEEEEc
Q 006793 159 ELDLCFYSF--ATDPPVIASLEVQQI 182 (631)
Q Consensus 159 ~l~v~~~~~--~~~~pfIn~iEl~~l 182 (631)
.=.|.|... ....|-|-.|+|.+.
T Consensus 124 ~NtI~~~~~~~~~~~pdiD~i~v~~~ 149 (156)
T 2wz8_A 124 NNTIRFYNGTSGSYAPNIDKIAIAAL 149 (156)
T ss_dssp EEEEEEECCSTTCBCCEEEEEEEEC-
T ss_pred ceEEEEEecCCCCCCcEEEEEEEecc
Confidence 677888766 344689999998654
No 171
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=72.37 E-value=3.4 Score=28.47 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=3.1
Q ss_pred HHHHhhcC
Q 006793 575 YICCIRRG 582 (631)
Q Consensus 575 ~~~~~~r~ 582 (631)
+++++||+
T Consensus 31 ~~~~RRRr 38 (44)
T 2l2t_A 31 AVYVRRKS 38 (44)
T ss_dssp HHHHHTTC
T ss_pred HHHhhhhh
Confidence 33333333
No 172
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=69.15 E-value=5.8 Score=40.62 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=62.3
Q ss_pred CchhhcccccccccccccccCCCCCCCc-ccc-ccccccccccccCCCCCC-ccCCCCCCCCEEEcccCcCccccchhhh
Q 006793 440 ISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLNNNLLEGRVPEELY 516 (631)
Q Consensus 440 ~p~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~-~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~ls~N~l~g~iP~~l~ 516 (631)
-...+.++..|+.+.+..+ ++ .|... +.. .+|+.+.+..+ +. .++ ..|.++.+|+.+.+.++.++ .|+...+
T Consensus 232 ~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF 306 (379)
T 4h09_A 232 GDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVF 306 (379)
T ss_dssp CTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCC-EECTTTT
T ss_pred ccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ce-eccccccccccccccccccccccc-eehhhhh
Confidence 3456778888999888765 55 45544 344 78999988765 44 343 46788999999999998888 7777666
Q ss_pred hccCCCCeEeecCC
Q 006793 517 SIGVHGGAFDLSGN 530 (631)
Q Consensus 517 ~~~~~L~~l~l~~N 530 (631)
....+|+.+.+..+
T Consensus 307 ~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 307 MDCVKLSSVTLPTA 320 (379)
T ss_dssp TTCTTCCEEECCTT
T ss_pred cCCCCCCEEEcCcc
Confidence 65558888888544
No 173
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=68.31 E-value=37 Score=29.43 Aligned_cols=91 Identities=14% Similarity=0.011 Sum_probs=50.9
Q ss_pred CCCceEEeecCCCcceEEEEEeecCCCCCCCCCCceEEEECCEEE-eecCCCCccccCCCceEEEEEEEeeCCeeeEEEe
Q 006793 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLV-FSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFY 165 (631)
Q Consensus 87 g~~~cY~~pv~~~g~ylvRl~F~y~nyd~~~~~~~Fdv~i~~~~~-l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~ 165 (631)
|..-.|++.+.+.|.|.|++.+.-+.. ..+..+|++||... ......-.+..-..-.-....+..+.+.=.|.|.
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~ryang~~----~~r~~~l~VNG~~~g~~~v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~ 113 (139)
T 2w87_A 38 GAAVVWAIDATSSGRRTLTIRYANGGT----ANRNGSLVINGGSNGNYTVSLPTTGAWTTWQTATIDVDLVQGNNIVQLS 113 (139)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCSS----SCCCEEEEETTTTTCEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCCC----CCceEEEEECCEEcceeEEEecCCCCCCccEEEEEEEEECCCceEEEEE
Confidence 444588888877899999998864431 24689999987532 0111111111001111112233345555455555
Q ss_pred ecC-CCCceeeeEEEEE
Q 006793 166 SFA-TDPPVIASLEVQQ 181 (631)
Q Consensus 166 ~~~-~~~pfIn~iEl~~ 181 (631)
... .+.|-|.-|+|.+
T Consensus 114 ~~~~~g~~niD~i~v~~ 130 (139)
T 2w87_A 114 ATTAEGLPNIDSLSVVG 130 (139)
T ss_dssp ESSTTCCCEEEEEEEES
T ss_pred EcCCCCCEEEEEEEEec
Confidence 443 4679999999865
No 174
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=65.41 E-value=21 Score=31.32 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=49.7
Q ss_pred CCceEEEEecCCCCceEEEEEeeccccccccCCceEEEEEECCeeccccceeccCCCccceeeeeeEeecCC--ceEEEE
Q 006793 272 SGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSS--TELTVK 349 (631)
Q Consensus 272 ~~~lt~~~~v~~~~~y~v~LhFaEi~~~~~~~~~R~F~V~in~~~l~~~di~~~~g~~~~~~~~~~~l~ls~--n~L~~~ 349 (631)
...++|++.++.++.|.+.+.++.- ....|.++|++||.....+.+ ...|+.......-..+.|.. |.|++.
T Consensus 38 G~~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~~~v~~-p~Tg~W~~w~t~~~~v~L~aG~ntI~l~ 111 (145)
T 2w3j_A 38 GASIVWSLSAASAKTYTAQIRFGNG-----GTSARRATVVVNDSQIKTLDF-PTNSNWTQWQTVNVDIPLKAGTNSIKLV 111 (145)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEECC-CCCSCTTSCEEEEEEEEECSEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEEEEEEECC-----CCCCeEEEEEECCeEeeEEEe-cCCCCCCeeEEEEEEEEECCCceEEEEE
Confidence 3458899888778899999999831 124789999999986544433 22333221111111333444 455554
Q ss_pred Ecccchhhhhhccccc
Q 006793 350 LVPVVGAALISGLENY 365 (631)
Q Consensus 350 l~~~~~~~~Ln~lEi~ 365 (631)
.....+.+.|..|++-
T Consensus 112 ~~~~~g~~niD~i~v~ 127 (145)
T 2w3j_A 112 AETADGLANIDSIRVT 127 (145)
T ss_dssp ECSTTCCCEEEEEEEC
T ss_pred EecCcCCEEEEEEEEE
Confidence 4323333445555554
No 175
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=64.62 E-value=26 Score=29.70 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=32.2
Q ss_pred CCceEEEEecCCCCceEEEEEeeccccccccCCceEEEEEECCeec
Q 006793 272 SGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV 317 (631)
Q Consensus 272 ~~~lt~~~~v~~~~~y~v~LhFaEi~~~~~~~~~R~F~V~in~~~l 317 (631)
...++|++.++.++.|.+.++++.-. ...|.++|++||...
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~rya~~~-----~~~~~~~l~VnG~~~ 78 (127)
T 2vzp_A 38 GSSVEWTVTVPSAGTYDVVVRYANGT-----TTSRPLDFSVNGSIS 78 (127)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCS-----SSCCCEEEEETTEEE
T ss_pred CCEEEEEEEcCCCCEEEEEEEEEcCC-----CCCeEEEEEECCEEe
Confidence 34589998887788999999998521 246889999999854
No 176
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=63.27 E-value=26 Score=30.53 Aligned_cols=89 Identities=20% Similarity=0.351 Sum_probs=49.8
Q ss_pred CCceEEEEecCCCCceEEEEEeeccccccccCCceEEEEEECCeec-cccceeccCCCccceeeeeeEeecCC--ceEEE
Q 006793 272 SGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV-TRVDIFNSVGSFAAYSWHYVAKNLSS--TELTV 348 (631)
Q Consensus 272 ~~~lt~~~~v~~~~~y~v~LhFaEi~~~~~~~~~R~F~V~in~~~l-~~~di~~~~g~~~~~~~~~~~l~ls~--n~L~~ 348 (631)
...++|++.+..++.|.+.+.++.- ....|.++|+|||..+ ..+.+ ...|+..........+.|.. |.|++
T Consensus 39 g~~v~~~V~v~~aG~Y~l~~ryan~-----~~~~~~~~l~VNG~~~~~~v~~-p~Tg~w~~w~~~~~~v~L~aG~ntI~l 112 (144)
T 2w47_A 39 GGYIEWNVNAPSSGSYALIFRYANG-----TTANRPMRITVNGNIVKPSMDF-VSTGAWTTWNEAGIVANLNQGNNVIRA 112 (144)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEEECC-CCCSSTTCCEEEEEEEEECSEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECC-----CCCCeEEEEEECCeEeeeEEEe-cCCCCCCeeEEEEEEEEECCCccEEEE
Confidence 3458899888778899999999841 1247889999999853 33433 22333221111111233444 44554
Q ss_pred EEcccchhhhhhcccccc
Q 006793 349 KLVPVVGAALISGLENYA 366 (631)
Q Consensus 349 ~l~~~~~~~~Ln~lEi~~ 366 (631)
......+.+.|..|++..
T Consensus 113 ~~~~~~g~~niD~i~v~~ 130 (144)
T 2w47_A 113 TAIASDGGPNVDYLKVFS 130 (144)
T ss_dssp EECSTTCCCEEEEEEEEE
T ss_pred EEeCCCCCEEEeEEEEEe
Confidence 433333334566665543
No 177
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=61.93 E-value=57 Score=33.41 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=52.4
Q ss_pred ceEEeecCCCcceEEEEEeecCCCCCCCCCCceEEEECCEEEeecCCCCccccCCCceEEEEEEEeeCCeeeEEEeecCC
Q 006793 90 NCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFAT 169 (631)
Q Consensus 90 ~cY~~pv~~~g~ylvRl~F~y~nyd~~~~~~~Fdv~i~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~~~~~ 169 (631)
+.+++.+ +.|.|.|.+.+--+ +.=.|...+...+. .. .......+|++.+.++.+.+.+...-.
T Consensus 78 ~~f~v~~-~~g~Y~v~v~~g~~--------~~~~v~~e~~~~~~-----~~--~g~~~~~~~~v~~~~g~~~l~~~~~~~ 141 (375)
T 2o14_A 78 NTFNVDL-PNGLYEVKVTLGNT--------ARASVAAEGVFQVI-----NM--TGDGAEDTFQIPVTDGQLNLLVTEGKA 141 (375)
T ss_dssp CCEEEEC-CSEEEEEEEEESSC--------SEEEEEETTEEEEE-----EE--ESTTCEEEEEEEECSSEEEEEEEESST
T ss_pred eEEEEEc-CCCceEEEEEecCC--------cceEEEEcceEEEE-----ec--CCCcEEEEEEEEeeCCeEEEeeeeccC
Confidence 4666666 78999999988643 23345555554333 11 123345677888889999998874433
Q ss_pred C-CceeeeEEEEEcCC
Q 006793 170 D-PPVIASLEVQQIDP 184 (631)
Q Consensus 170 ~-~pfIn~iEl~~l~~ 184 (631)
+ .+++++||+.+.+.
T Consensus 142 g~~~~l~~i~v~~~~~ 157 (375)
T 2o14_A 142 GTAFTLSALKIKKLSD 157 (375)
T ss_dssp TSCCEEEEEEEEEEES
T ss_pred CCCcccceEEEeccCC
Confidence 3 58999999998753
No 178
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=59.87 E-value=5.9 Score=27.22 Aligned_cols=9 Identities=33% Similarity=0.194 Sum_probs=3.6
Q ss_pred HHHHhhcCC
Q 006793 575 YICCIRRGR 583 (631)
Q Consensus 575 ~~~~~~r~~ 583 (631)
.++.+||+.
T Consensus 32 ~~~~RRR~~ 40 (44)
T 2jwa_A 32 GILIKRRQQ 40 (44)
T ss_dssp HHHHHHHCS
T ss_pred Hhheehhhh
Confidence 333444443
No 179
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=56.67 E-value=3.5 Score=27.47 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=7.1
Q ss_pred ehhhHHHHHHHHHHHHHHH
Q 006793 559 IVILSLVLFSGVLLVVYIC 577 (631)
Q Consensus 559 ~~i~~~~~~~~~~~~~~~~ 577 (631)
+++++.+.+++++.+++++
T Consensus 16 iVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 16 VIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 180
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=54.14 E-value=54 Score=29.06 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=50.7
Q ss_pred CceEEE-EecCCCCceEEEEEeeccccc-----cccCCceEEEEEECCeeccccceeccCCCccceeeeeeEeecCCceE
Q 006793 273 GAIQYN-LAVDAKLDYLIWFHFAEIDSS-----VTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTEL 346 (631)
Q Consensus 273 ~~lt~~-~~v~~~~~y~v~LhFaEi~~~-----~~~~~~R~F~V~in~~~l~~~di~~~~g~~~~~~~~~~~l~ls~n~L 346 (631)
+.++|. +.++.++.|.+.++|+.-... -.+...|...|+|||.....+.. ..++...........+.|..+.=
T Consensus 47 ~~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~f-p~Tg~W~~~~~~tv~V~L~aG~N 125 (156)
T 2wz8_A 47 NYLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYF-FNTRGWNTYRTDIIDVYLNAGNN 125 (156)
T ss_dssp SCEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEEE-CCCSSTTCCEEEEEEEEECSEEE
T ss_pred CEEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEEe-CCCCCCCcceEEEEEEEECCCce
Confidence 468898 888778999999999853210 00113799999999975433332 22333222211122334554333
Q ss_pred EEEEccc--ch-hhhhhcccccc
Q 006793 347 TVKLVPV--VG-AALISGLENYA 366 (631)
Q Consensus 347 ~~~l~~~--~~-~~~Ln~lEi~~ 366 (631)
+++|... .+ .|.|..|++..
T Consensus 126 tI~~~~~~~~~~~pdiD~i~v~~ 148 (156)
T 2wz8_A 126 TIRFYNGTSGSYAPNIDKIAIAA 148 (156)
T ss_dssp EEEEECCSTTCBCCEEEEEEEEC
T ss_pred EEEEEecCCCCCCcEEEEEEEec
Confidence 3444433 22 25566666543
No 181
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=53.76 E-value=39 Score=29.22 Aligned_cols=87 Identities=11% Similarity=0.185 Sum_probs=48.7
Q ss_pred CCceEEEEecCCCCceEEEEEeeccccccccCCceEEEEEECCeec--cccceeccCCCccceeeeeeEeecCC--ceEE
Q 006793 272 SGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV--TRVDIFNSVGSFAAYSWHYVAKNLSS--TELT 347 (631)
Q Consensus 272 ~~~lt~~~~v~~~~~y~v~LhFaEi~~~~~~~~~R~F~V~in~~~l--~~~di~~~~g~~~~~~~~~~~l~ls~--n~L~ 347 (631)
...++|++.++.++.|.+.+.++.- ....|..+|++||... ..+.+ ...|+..........+.|.. |.|+
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~g~~~v~~-p~Tg~W~~w~t~~~~v~L~aG~ntI~ 111 (139)
T 2w87_A 38 GAAVVWAIDATSSGRRTLTIRYANG-----GTANRNGSLVINGGSNGNYTVSL-PTTGAWTTWQTATIDVDLVQGNNIVQ 111 (139)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTTTTCEEEECC-CCCSSTTCCEEEEEEEEECSEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECC-----CCCCceEEEEECCEEcceeEEEe-cCCCCCCccEEEEEEEEECCCceEEE
Confidence 3458898888778899999999841 1236889999999754 34433 22333221111112233444 4555
Q ss_pred EEEcccchhhhhhcccc
Q 006793 348 VKLVPVVGAALISGLEN 364 (631)
Q Consensus 348 ~~l~~~~~~~~Ln~lEi 364 (631)
+......+.+.|..|++
T Consensus 112 l~~~~~~g~~niD~i~v 128 (139)
T 2w87_A 112 LSATTAEGLPNIDSLSV 128 (139)
T ss_dssp EEESSTTCCCEEEEEEE
T ss_pred EEEcCCCCCEEEEEEEE
Confidence 55433223344555554
No 182
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=31.62 E-value=68 Score=23.88 Aligned_cols=35 Identities=9% Similarity=-0.040 Sum_probs=15.7
Q ss_pred ehhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCchh
Q 006793 559 IVILSLVLFSGVLLVVYICCIRRGRNDYDFGLPQD 593 (631)
Q Consensus 559 ~~i~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 593 (631)
++++.++.+++++....+++.|.+.+++.-.+-++
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrqAeRMSQ 46 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAERMSQ 46 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCTTSSH
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34555554444444444444444444433333343
Done!