BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006794
(631 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 38/261 (14%)
Query: 216 ISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIK----DCPLVRDQ 271
+ E + + CPNL L E+ + IG+ GL+ + ++C+ L+ L I+ + + ++
Sbjct: 305 LETEDHCTLIQKCPNLEVL--ETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362
Query: 272 GIXXXXXXXXXXXTRVKLQAL-----NITDFSLAVIGHYGKALTNLVL---------SDL 317
G+ +L+ + +IT+ SL IG Y K L + L +DL
Sbjct: 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422
Query: 318 PNVSEKGFWVMGNAQGLQKLVSLTIA-SGGGVTDVSLEAMGKGCLNLKQMCLRKCCFV-- 374
P + G V G +KL GG+TD+ L +G+ N++ M L +V
Sbjct: 423 P--LDNG--VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL---GYVGE 475
Query: 375 SDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATE- 433
SD GL+ FS+ +L+ L++ C S+ I V +KL SL + G + T
Sbjct: 476 SDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAV----TKLPSLRYLWVQGYRASMTGQ 530
Query: 434 --MPMLSPNCSLRSLSIRNCP 452
M M P ++ + R P
Sbjct: 531 DLMQMARPYWNIELIPSRRVP 551
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 337 LVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKA-AGSLEILQLE 395
+ +L + GG + + LK + R+ VSD L +KA A LE L+L+
Sbjct: 88 MFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLD 146
Query: 396 ECNRVSQSGILGVVSNSASKLKSLTL 421
+C+ + G+L +V++ K+K+L +
Sbjct: 147 KCSGFTTDGLLSIVTH-CRKIKTLLM 171
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 27/138 (19%)
Query: 230 NLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGIXXXXXXXXXXXTRVKL 289
+L +L ++ CS DGL +I CR ++ L +++ G L
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW--------------L 184
Query: 290 QALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVT 349
L + SL V+ Y + DL + A+ + LVS+ + G
Sbjct: 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETI----------ARNCRSLVSVKV---GDFE 231
Query: 350 DVSLEAMGKGCLNLKQMC 367
+ L K NL++ C
Sbjct: 232 ILELVGFFKAAANLEEFC 249
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 469 LQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNL 528
L ++LSG G ++ + LL SC + L ++NLS C + T++ V SET+ LNL
Sbjct: 144 LVRLNLSGCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202
Query: 529 DGCRK-ITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN-LQVLSLSSCSEV 586
G RK + + L + C L +LD+S + + QLN LQ LSLS C ++
Sbjct: 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFQLNYLQHLSLSRCYDI 260
Query: 587 SNKSM------PALKKL 597
+++ P LK L
Sbjct: 261 IPETLLELGEIPTLKTL 277
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 11/114 (9%)
Query: 468 QLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLN 527
++QH+DLS + +V + S + L ++L G L L+D +V LA+ + L LN
Sbjct: 94 RVQHMDLSN--SVIEVSTLHGILSQCSKLQNLSLEG-LRLSDPIVNTLAK--NSNLVRLN 148
Query: 528 LDGCRKITDASLVAIGNNCMFLSYLDVSKCA-ITDMGIS-ALSHAE----QLNL 575
L GC ++ +L + ++C L L++S C T+ + A++H QLNL
Sbjct: 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 7/159 (4%)
Query: 392 LQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNC 451
L L C+ S+ + ++S S S+L L L C + ++ + + ++ L++
Sbjct: 147 LNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205
Query: 452 -PGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDE 510
+ L+ L + CP L H+DLS + + + L ++LS C ++ E
Sbjct: 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--LNYLQHLSLSRCYDIIPE 263
Query: 511 VVLALARLHS-ETLELLNL--DGCRKITDASLVAIGNNC 546
+L L + + +TL++ + DG ++ +L + NC
Sbjct: 264 TLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINC 302
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 469 LQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNL 528
L ++LSG G ++ + LL SC + L ++NLS C + T++ V SET+ LNL
Sbjct: 106 LVRLNLSGCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 164
Query: 529 DGCRK-ITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN-LQVLSLSSCSEV 586
G RK + + L + C L +LD+S + + QLN LQ LSLS C ++
Sbjct: 165 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFQLNYLQHLSLSRCYDI 222
Query: 587 SNKSM------PALKKL 597
+++ P LK L
Sbjct: 223 IPETLLELGEIPTLKTL 239
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 11/114 (9%)
Query: 468 QLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLN 527
++QH+DLS + +V + S + L ++L G L L+D +V LA+ + L LN
Sbjct: 56 RVQHMDLSN--SVIEVSTLHGILSQCSKLQNLSLEG-LRLSDPIVNTLAK--NSNLVRLN 110
Query: 528 LDGCRKITDASLVAIGNNCMFLSYLDVSKCA-ITDMGIS-ALSHAE----QLNL 575
L GC ++ +L + ++C L L++S C T+ + A++H QLNL
Sbjct: 111 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 164
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 7/159 (4%)
Query: 392 LQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNC 451
L L C+ S+ + ++S S S+L L L C + ++ + + ++ L++
Sbjct: 109 LNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 167
Query: 452 -PGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDE 510
+ L+ L + CP L H+DLS + + + L ++LS C ++ E
Sbjct: 168 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--LNYLQHLSLSRCYDIIPE 225
Query: 511 VVLALARLHS-ETLELLNL--DGCRKITDASLVAIGNNC 546
+L L + + +TL++ + DG ++ +L + NC
Sbjct: 226 TLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINC 264
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 131/342 (38%), Gaps = 75/342 (21%)
Query: 216 ISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGIXX 275
++++ L IA++ N L + SC DGL AI CRNL+ L +++
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE----------- 165
Query: 276 XXXXXXXXXTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQ 335
SD+ +VS G W+
Sbjct: 166 ---------------------------------------SDVDDVS--GHWLSHFPDTYT 184
Query: 336 KLVSLTIAS-GGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQL 394
LVSL I+ V+ +LE + C NLK + L + V L + A LE L
Sbjct: 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEELGT 242
Query: 395 EECNRVSQSGILGVVSNSASKLKSLTLVKCM-GIKD-MATEMPMLSPNCS-LRSLSIRNC 451
+ + +S + S K L +C+ G D + +P + CS L +L++
Sbjct: 243 GGYTAEVRPDVYSGLSVALSGCKEL---RCLSGFWDAVPAYLPAVYSVCSRLTTLNL--- 296
Query: 452 PGFGNASLAMLGKL---CPQLQHVDLSGLYGITDVGIFPLLESCK-AGLVKVNLSGCLNL 507
+ L KL CP+LQ L L I D G+ L +CK ++V S +
Sbjct: 297 -SYATVQSYDLVKLLCQCPKLQR--LWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVM 353
Query: 508 TDEVVLALARLHSETLELLNLDG----CRKITDASLVAIGNN 545
V L L S ++ L+ CR++T+A+L+ I N
Sbjct: 354 EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,179,298
Number of Sequences: 62578
Number of extensions: 610663
Number of successful extensions: 1413
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1370
Number of HSP's gapped (non-prelim): 39
length of query: 631
length of database: 14,973,337
effective HSP length: 105
effective length of query: 526
effective length of database: 8,402,647
effective search space: 4419792322
effective search space used: 4419792322
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)