Query 006794
Match_columns 631
No_of_seqs 345 out of 2844
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 14:35:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 5.3E-34 1.2E-38 262.8 13.3 395 50-620 73-472 (483)
2 KOG4341 F-box protein containi 99.9 3E-28 6.4E-33 225.1 9.4 322 197-629 131-456 (483)
3 KOG2120 SCF ubiquitin ligase, 99.9 3.6E-24 7.9E-29 189.1 13.2 293 46-390 95-390 (419)
4 PLN00113 leucine-rich repeat r 99.8 2E-19 4.3E-24 204.2 18.3 107 495-610 476-582 (968)
5 PLN00113 leucine-rich repeat r 99.8 3.6E-19 7.9E-24 202.1 18.8 423 147-614 92-537 (968)
6 KOG4194 Membrane glycoprotein 99.8 1.3E-19 2.8E-24 174.8 1.7 380 177-626 78-466 (873)
7 KOG4194 Membrane glycoprotein 99.6 8.3E-17 1.8E-21 155.7 2.4 344 203-615 78-431 (873)
8 cd00116 LRR_RI Leucine-rich re 99.6 3.6E-14 7.7E-19 140.2 20.7 178 441-624 108-302 (319)
9 cd00116 LRR_RI Leucine-rich re 99.6 1.6E-13 3.5E-18 135.5 23.3 163 441-608 137-316 (319)
10 KOG1947 Leucine rich repeat pr 99.6 2.6E-14 5.6E-19 150.3 18.4 277 201-558 159-438 (482)
11 KOG2120 SCF ubiquitin ligase, 99.6 6.6E-15 1.4E-19 131.0 11.1 170 348-551 222-391 (419)
12 PLN03210 Resistant to P. syrin 99.5 2.8E-14 6E-19 162.4 12.0 291 284-614 613-908 (1153)
13 KOG1947 Leucine rich repeat pr 99.5 2.2E-13 4.9E-18 143.1 14.6 179 440-623 268-451 (482)
14 PLN03210 Resistant to P. syrin 99.4 1.1E-12 2.5E-17 149.3 14.4 340 174-557 555-903 (1153)
15 KOG0444 Cytoskeletal regulator 99.4 1.1E-14 2.3E-19 142.5 -2.6 371 176-613 6-376 (1255)
16 KOG0618 Serine/threonine phosp 99.3 4.5E-13 9.8E-18 137.4 2.3 246 334-610 218-487 (1081)
17 KOG1909 Ran GTPase-activating 99.3 3.2E-11 7E-16 110.6 13.5 218 359-598 90-324 (382)
18 KOG0444 Cytoskeletal regulator 99.2 3.3E-13 7E-18 132.3 -3.6 299 148-485 7-308 (1255)
19 KOG3207 Beta-tubulin folding c 99.2 1.4E-11 3E-16 116.2 4.1 182 126-317 99-281 (505)
20 KOG1909 Ran GTPase-activating 99.2 2.2E-09 4.8E-14 98.7 17.2 49 519-568 268-321 (382)
21 KOG0618 Serine/threonine phosp 99.0 3.1E-11 6.6E-16 124.2 -2.5 104 150-267 23-126 (1081)
22 PF12937 F-box-like: F-box-lik 99.0 1.9E-10 4.1E-15 75.9 2.1 36 49-85 1-36 (47)
23 KOG3207 Beta-tubulin folding c 98.9 7.5E-10 1.6E-14 104.7 4.9 212 332-582 118-335 (505)
24 KOG0472 Leucine-rich repeat pr 98.7 4.2E-10 9E-15 105.1 -5.0 37 571-610 503-539 (565)
25 KOG4237 Extracellular matrix p 98.7 5.8E-09 1.3E-13 97.5 2.1 96 495-597 275-370 (498)
26 PRK15387 E3 ubiquitin-protein 98.7 8.5E-08 1.9E-12 102.0 10.1 265 255-594 201-465 (788)
27 PRK15387 E3 ubiquitin-protein 98.6 3.4E-08 7.3E-13 105.0 6.1 265 229-567 201-465 (788)
28 PF00646 F-box: F-box domain; 98.6 1E-08 2.2E-13 68.3 0.2 38 48-86 2-39 (48)
29 KOG3665 ZYG-1-like serine/thre 98.5 2.4E-07 5.2E-12 98.2 9.3 154 443-606 124-282 (699)
30 KOG3665 ZYG-1-like serine/thre 98.5 2.6E-07 5.7E-12 97.9 9.5 63 335-398 122-184 (699)
31 PRK15370 E3 ubiquitin-protein 98.4 8.8E-07 1.9E-11 95.0 10.4 53 307-371 199-251 (754)
32 smart00256 FBOX A Receptor for 98.4 1.4E-07 3.1E-12 60.4 2.7 34 52-86 1-34 (41)
33 KOG3864 Uncharacterized conser 98.3 5.2E-07 1.1E-11 77.0 4.7 106 495-630 102-209 (221)
34 KOG2982 Uncharacterized conser 98.3 1.6E-06 3.4E-11 78.5 6.1 137 439-584 119-260 (418)
35 PF14580 LRR_9: Leucine-rich r 98.2 1E-06 2.2E-11 76.2 4.2 107 495-611 43-152 (175)
36 PRK15370 E3 ubiquitin-protein 98.2 4.8E-06 1.1E-10 89.4 9.0 151 387-567 283-435 (754)
37 COG5238 RNA1 Ran GTPase-activa 98.2 3.6E-05 7.8E-10 69.0 12.5 115 439-557 155-282 (388)
38 PF14580 LRR_9: Leucine-rich r 98.1 1.3E-06 2.8E-11 75.5 2.5 132 438-583 16-150 (175)
39 KOG2982 Uncharacterized conser 98.1 6E-06 1.3E-10 74.8 5.4 37 441-477 173-209 (418)
40 KOG1259 Nischarin, modulator o 98.0 2.5E-06 5.4E-11 77.2 1.4 127 439-584 282-410 (490)
41 KOG3864 Uncharacterized conser 97.9 1E-05 2.3E-10 69.2 4.4 86 468-558 102-187 (221)
42 KOG4237 Extracellular matrix p 97.9 1.9E-06 4.1E-11 81.1 -0.5 291 306-625 66-372 (498)
43 COG5238 RNA1 Ran GTPase-activa 97.9 0.00023 5.1E-09 63.9 11.6 217 148-397 30-282 (388)
44 KOG0472 Leucine-rich repeat pr 97.8 1.2E-05 2.6E-10 76.0 2.9 62 171-239 246-307 (565)
45 KOG1259 Nischarin, modulator o 97.6 1.5E-05 3.1E-10 72.4 0.3 126 335-477 284-409 (490)
46 KOG4658 Apoptotic ATPase [Sign 97.6 8.2E-05 1.8E-09 81.5 5.5 64 201-266 543-606 (889)
47 KOG4658 Apoptotic ATPase [Sign 97.5 0.00014 2.9E-09 79.9 5.7 37 200-238 568-604 (889)
48 PF13855 LRR_8: Leucine rich r 97.4 4.3E-05 9.3E-10 53.7 0.3 59 521-583 1-59 (61)
49 PF13855 LRR_8: Leucine rich r 97.0 0.00024 5.2E-09 49.9 0.7 60 547-610 1-60 (61)
50 PRK15386 type III secretion pr 96.9 0.0017 3.6E-08 63.8 6.3 120 359-507 50-169 (426)
51 smart00367 LRR_CC Leucine-rich 96.9 0.00077 1.7E-08 37.5 2.4 25 598-622 1-25 (26)
52 PRK15386 type III secretion pr 96.9 0.0018 3.8E-08 63.7 6.4 139 384-557 49-187 (426)
53 PLN03150 hypothetical protein; 96.9 0.0017 3.6E-08 69.7 6.1 40 520-561 465-504 (623)
54 KOG1859 Leucine-rich repeat pr 96.8 0.00018 3.9E-09 73.6 -2.0 63 196-262 77-139 (1096)
55 KOG1859 Leucine-rich repeat pr 96.7 0.001 2.2E-08 68.3 2.5 56 168-224 75-130 (1096)
56 PLN03215 ascorbic acid mannose 96.7 0.0011 2.3E-08 64.3 2.6 40 47-86 2-41 (373)
57 KOG2123 Uncharacterized conser 96.6 0.0007 1.5E-08 61.2 0.8 121 495-629 20-146 (388)
58 KOG4308 LRR-containing protein 96.4 0.00096 2.1E-08 68.1 0.3 204 416-626 89-316 (478)
59 KOG4308 LRR-containing protein 96.3 0.0027 5.9E-08 64.8 3.2 203 413-622 114-341 (478)
60 KOG0617 Ras suppressor protein 96.3 0.00011 2.4E-09 61.1 -5.6 112 437-560 75-186 (264)
61 KOG0281 Beta-TrCP (transducin 96.3 0.0026 5.6E-08 58.9 2.3 62 45-113 71-137 (499)
62 PF12799 LRR_4: Leucine Rich r 96.2 0.0094 2E-07 38.2 4.3 33 548-583 2-34 (44)
63 PF12799 LRR_4: Leucine Rich r 96.2 0.0056 1.2E-07 39.2 3.1 38 521-561 1-38 (44)
64 smart00367 LRR_CC Leucine-rich 96.1 0.0052 1.1E-07 34.2 2.3 24 572-595 1-24 (26)
65 KOG2997 F-box protein FBX9 [Ge 95.6 0.0067 1.5E-07 55.9 2.1 40 44-84 102-146 (366)
66 PLN03150 hypothetical protein; 95.5 0.025 5.4E-07 60.8 6.3 107 443-558 420-526 (623)
67 KOG2123 Uncharacterized conser 95.5 0.0046 9.9E-08 56.1 0.5 103 147-261 18-123 (388)
68 KOG2739 Leucine-rich acidic nu 95.3 0.0046 9.9E-08 55.8 0.1 91 332-423 62-152 (260)
69 KOG0617 Ras suppressor protein 95.3 0.0007 1.5E-08 56.4 -4.6 134 434-587 49-186 (264)
70 KOG2739 Leucine-rich acidic nu 95.3 0.0087 1.9E-07 54.1 1.7 86 520-608 64-152 (260)
71 PF13013 F-box-like_2: F-box-l 95.2 0.02 4.4E-07 44.7 3.3 34 48-82 21-56 (109)
72 KOG4579 Leucine-rich repeat (L 94.8 0.016 3.4E-07 46.9 1.7 61 495-561 54-114 (177)
73 PF13516 LRR_6: Leucine Rich r 94.8 0.021 4.6E-07 30.9 1.7 23 546-568 1-23 (24)
74 KOG1644 U2-associated snRNP A' 94.3 0.014 2.9E-07 50.6 0.4 106 467-582 42-149 (233)
75 KOG1644 U2-associated snRNP A' 94.2 0.03 6.5E-07 48.6 2.0 17 437-453 136-152 (233)
76 KOG4579 Leucine-rich repeat (L 93.5 0.013 2.8E-07 47.4 -1.2 83 495-584 28-111 (177)
77 COG4886 Leucine-rich repeat (L 93.0 0.12 2.7E-06 52.5 4.7 33 546-582 254-286 (394)
78 PF13516 LRR_6: Leucine Rich r 92.5 0.076 1.6E-06 28.7 1.3 22 599-621 2-23 (24)
79 COG4886 Leucine-rich repeat (L 90.5 0.4 8.7E-06 48.8 5.1 148 442-613 141-290 (394)
80 smart00368 LRR_RI Leucine rich 89.8 0.35 7.6E-06 27.3 2.3 22 547-568 2-23 (28)
81 KOG0274 Cdc4 and related F-box 89.1 0.14 3E-06 53.5 0.5 44 42-86 101-144 (537)
82 smart00368 LRR_RI Leucine rich 89.1 0.45 9.7E-06 26.9 2.4 25 599-624 2-26 (28)
83 PF13504 LRR_7: Leucine rich r 86.6 0.58 1.3E-05 22.8 1.6 12 548-559 2-13 (17)
84 KOG0531 Protein phosphatase 1, 86.3 0.21 4.6E-06 51.0 -0.0 59 332-398 92-151 (414)
85 KOG0531 Protein phosphatase 1, 84.6 0.25 5.5E-06 50.5 -0.4 168 414-608 95-264 (414)
86 PF09372 PRANC: PRANC domain; 81.0 0.83 1.8E-05 35.4 1.3 26 46-72 69-94 (97)
87 KOG3763 mRNA export factor TAP 75.7 5.5 0.00012 40.8 5.4 42 356-397 213-254 (585)
88 KOG3763 mRNA export factor TAP 73.0 5.6 0.00012 40.7 4.7 35 495-530 219-253 (585)
89 PF00560 LRR_1: Leucine Rich R 69.7 2.8 6.1E-05 21.9 1.1 13 548-560 1-13 (22)
90 KOG3926 F-box proteins [Amino 62.6 12 0.00025 34.4 4.1 43 42-84 195-237 (332)
91 KOG0532 Leucine-rich repeat (L 59.0 2.9 6.3E-05 42.8 -0.2 33 549-584 213-245 (722)
92 smart00369 LRR_TYP Leucine-ric 58.4 8.3 0.00018 21.0 1.7 15 547-561 2-16 (26)
93 smart00370 LRR Leucine-rich re 58.4 8.3 0.00018 21.0 1.7 15 547-561 2-16 (26)
94 KOG2502 Tub family proteins [G 55.4 17 0.00037 34.9 4.1 39 47-85 43-88 (355)
95 KOG0532 Leucine-rich repeat (L 50.9 2.8 6.1E-05 42.9 -1.7 108 495-617 144-251 (722)
96 smart00365 LRR_SD22 Leucine-ri 48.7 15 0.00033 20.3 1.7 14 547-560 2-15 (26)
97 PF07723 LRR_2: Leucine Rich R 46.1 15 0.00033 20.2 1.4 22 443-464 2-23 (26)
98 PHA02875 ankyrin repeat protei 38.5 19 0.00042 36.8 2.0 27 46-73 384-410 (413)
99 PHA03100 ankyrin repeat protei 33.8 23 0.00049 37.1 1.7 29 46-75 445-473 (480)
100 PHA02878 ankyrin repeat protei 29.3 28 0.0006 36.5 1.4 27 45-72 443-469 (477)
101 PHA02989 ankyrin repeat protei 29.2 24 0.00053 37.1 0.9 27 46-73 456-482 (494)
102 KOG4242 Predicted myosin-I-bin 27.4 1.1E+02 0.0023 31.3 4.8 111 306-423 164-277 (553)
103 smart00364 LRR_BAC Leucine-ric 23.4 49 0.0011 18.3 1.0 13 548-560 3-15 (26)
104 PHA02798 ankyrin-like protein; 23.3 42 0.00091 35.3 1.4 26 45-71 460-485 (489)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=5.3e-34 Score=262.80 Aligned_cols=395 Identities=27% Similarity=0.417 Sum_probs=223.9
Q ss_pred CCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHHhhhhhhhhccchhhHHHhhhcccccccccccCCCCCCccceeccC
Q 006794 50 DVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTRCLDG 129 (631)
Q Consensus 50 ~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 129 (631)
-.||+|++.+||++|+ .+.+.+++.+|+-|...+.- ...|.++..... ++..++
T Consensus 73 ~~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD-------------------~~~~q~idL~t~------~rDv~g 126 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALD-------------------GSCWQHIDLFTF------QRDVDG 126 (483)
T ss_pred ccCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhc-------------------cccceeeehhcc------hhcCCC
Confidence 3799999999999999 99999999999999997621 255654441100 011111
Q ss_pred CCccchhhHHHhhcccCCCCcceeEeeCccccCccChhhHHHHHhcC-CCCCeEeecCCCCCChhhHHHHHHhCCCCCEe
Q 006794 130 KKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGC-PSLKSLSLWNVPSVGDEGLLEIAKECHLLEKL 208 (631)
Q Consensus 130 ~~~~~~~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 208 (631)
. .+..+.+.| ..|++|.+.+|....+..+..+...||++++|
T Consensus 127 ~-------------------------------------VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL 169 (483)
T KOG4341|consen 127 G-------------------------------------VVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHL 169 (483)
T ss_pred c-------------------------------------ceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhh
Confidence 1 111222222 36677777777666666777777777777777
Q ss_pred eccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhccccee
Q 006794 209 ELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVK 288 (631)
Q Consensus 209 ~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~ 288 (631)
.+.+|..+++..+..+...|++|++|.+..|..+++..++.+++.|++|++|+++-|+.+...++..+.++
T Consensus 170 ~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG--------- 240 (483)
T KOG4341|consen 170 ALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG--------- 240 (483)
T ss_pred hhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc---------
Confidence 77777777777777777777777777777777777766666666666666666666655444333332222
Q ss_pred ccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEc
Q 006794 289 LQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCL 368 (631)
Q Consensus 289 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 368 (631)
+..++.+...+|.....+.+......++-+.++++
T Consensus 241 ---------------------------------------------~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 241 ---------------------------------------------CKELEKLSLKGCLELELEALLKAAAYCLEILKLNL 275 (483)
T ss_pred ---------------------------------------------chhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence 12222232333433444444444444444444444
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEec
Q 006794 369 RKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSI 448 (631)
Q Consensus 369 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 448 (631)
..|..++|.++..+...+..|+. |..
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~------------------------------------------------------l~~ 301 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQV------------------------------------------------------LCY 301 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhh------------------------------------------------------hcc
Confidence 44444444444444433333443 444
Q ss_pred cCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecc
Q 006794 449 RNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNL 528 (631)
Q Consensus 449 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l 528 (631)
++|..+++..+..+++++++|+.|.+.+|..+++.++..+...|+ .|+.+++.+|..+.+..+..++. +++.||.|.+
T Consensus 302 s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~-~Le~l~~e~~~~~~d~tL~sls~-~C~~lr~lsl 379 (483)
T KOG4341|consen 302 SSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP-HLERLDLEECGLITDGTLASLSR-NCPRLRVLSL 379 (483)
T ss_pred cCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh-hhhhhcccccceehhhhHhhhcc-CCchhccCCh
Confidence 444445555556666666666666666666666666666655555 56666666665555555555555 5566666666
Q ss_pred cCCCCCChHHHHHHH---hcCCcCCEEEecCCc-cChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCccccc
Q 006794 529 DGCRKITDASLVAIG---NNCMFLSYLDVSKCA-ITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGL 604 (631)
Q Consensus 529 ~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L 604 (631)
++|..++|.++..+. ..+..|+.+.|++|. +++..++.+. .|++|+++++-+|..++..++..+...+|+++..
T Consensus 380 shce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~--~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 380 SHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS--ICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred hhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh--hCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 666666665554443 233445555555554 3344444444 5555555555555555555555555555555555
Q ss_pred ccccccCCCHHHHHHH
Q 006794 605 NLQNCNSINSSTVARL 620 (631)
Q Consensus 605 ~l~~c~~l~~~~~~~l 620 (631)
.+.. +..+...++.+
T Consensus 458 a~~a-~~t~p~~v~~~ 472 (483)
T KOG4341|consen 458 AYFA-PVTPPGFVKGL 472 (483)
T ss_pred hhcc-CCCCccccccc
Confidence 5444 43333333333
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=3e-28 Score=225.06 Aligned_cols=322 Identities=29% Similarity=0.561 Sum_probs=241.9
Q ss_pred HHHHhC-CCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHH
Q 006794 197 EIAKEC-HLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISS 275 (631)
Q Consensus 197 ~~~~~~-~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 275 (631)
.++..| ..|++|.+.+|..+.+..+..+..+||++++|.+.+|..+++.....+++.|++|++|++..|..++
T Consensus 131 ~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT------ 204 (483)
T KOG4341|consen 131 NMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT------ 204 (483)
T ss_pred hHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH------
Confidence 333344 3577777777766666666666666777777777777767776666666666666666665555433
Q ss_pred HHhhhhhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHH
Q 006794 276 LLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEA 355 (631)
Q Consensus 276 l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 355 (631)
+..+..
T Consensus 205 --------------------------------------------------------------------------~~~Lk~ 210 (483)
T KOG4341|consen 205 --------------------------------------------------------------------------DVSLKY 210 (483)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 333333
Q ss_pred HhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccc
Q 006794 356 MGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMP 435 (631)
Q Consensus 356 l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 435 (631)
+...|++|++|+++.|+.+++.++..+..++..++.+...+|...+...+...-
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~-------------------------- 264 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA-------------------------- 264 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh--------------------------
Confidence 444445555555555555544555555555555555555555544444333221
Q ss_pred cCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHH
Q 006794 436 MLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLAL 515 (631)
Q Consensus 436 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l 515 (631)
..++-+.++++..|..++|..+..+...+..|+.|..++|..+++..+.++.+.|+ +|+.|.+++|..+++.++..+
T Consensus 265 --~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~-~L~~l~l~~c~~fsd~~ft~l 341 (483)
T KOG4341|consen 265 --AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH-NLQVLELSGCQQFSDRGFTML 341 (483)
T ss_pred --ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC-ceEEEeccccchhhhhhhhhh
Confidence 12334445556666677888888888889999999999999999999999999998 999999999999999999999
Q ss_pred HhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCc-cChhhHHhhhh--ccCCCccEEeccCCCCCCcchHH
Q 006794 516 ARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCA-ITDMGISALSH--AEQLNLQVLSLSSCSEVSNKSMP 592 (631)
Q Consensus 516 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~-l~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~ 592 (631)
.. .++.|+.+++.+|..+++..+.+++.+|+.|+.+.|+.|. ++|+++..+.. .....|+.+.+++|+.+++..++
T Consensus 342 ~r-n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 342 GR-NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred hc-CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 98 8999999999999899988899999999999999999996 89998887763 36778999999999999998888
Q ss_pred HHHHhcCcccccccccccCCCHHHHHHHHhhcccccc
Q 006794 593 ALKKLGKTLVGLNLQNCNSINSSTVARLVESLWRCDI 629 (631)
Q Consensus 593 ~l~~~~~~L~~L~l~~c~~l~~~~~~~l~~~l~~~~~ 629 (631)
. ...|++|+.+++.+|..+++++++.++.++|...|
T Consensus 421 ~-l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 421 H-LSICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred H-HhhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 7 55788999999999999999999999999987665
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.6e-24 Score=189.12 Aligned_cols=293 Identities=23% Similarity=0.256 Sum_probs=145.5
Q ss_pred CCCcCCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHHhhhhhhhhccchhhHHHhhhcccccccccccCCCCCCccce
Q 006794 46 QPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTR 125 (631)
Q Consensus 46 ~~~i~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 125 (631)
.-.|..|||||+..||+.|. .+++++++.||||||++... -..|..++
T Consensus 95 gv~~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~d-------------------e~lW~~lD------------ 142 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASD-------------------ESLWQTLD------------ 142 (419)
T ss_pred CCCcccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhcccc-------------------ccceeeec------------
Confidence 34488999999999999999 99999999999999998632 13443322
Q ss_pred eccCCCccchhhHHHhhcccCCCCcceeEeeCccccCccChhhHHHHHhcC-CCCCeEeecCCCCCChhhHHHHHHhCCC
Q 006794 126 CLDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGC-PSLKSLSLWNVPSVGDEGLLEIAKECHL 204 (631)
Q Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 204 (631)
+.++.+....+..+.. .++..+.+... .+.++.+.....-+ ..|++|+++.. .++...+..+++.|.+
T Consensus 143 -l~~r~i~p~~l~~l~~-----rgV~v~Rlar~----~~~~prlae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~k 211 (419)
T KOG2120|consen 143 -LTGRNIHPDVLGRLLS-----RGVIVFRLARS----FMDQPRLAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSK 211 (419)
T ss_pred -cCCCccChhHHHHHHh-----CCeEEEEcchh----hhcCchhhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHh
Confidence 1112111111111110 12222222211 11111111111111 13444444432 3444444444444444
Q ss_pred CCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcc
Q 006794 205 LEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVL 284 (631)
Q Consensus 205 L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L 284 (631)
|+.|.+.+ ..+.+.....+++ -.+|+.|++++|.+++..++..+...|..|.+|+++-|....+. +..+..+.+..+
T Consensus 212 Lk~lSlEg-~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l 288 (419)
T KOG2120|consen 212 LKNLSLEG-LRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETL 288 (419)
T ss_pred hhhccccc-cccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhh
Confidence 44444444 3344443333332 34444444444444444444444444444444444444432222 333333333334
Q ss_pred cceecccc--ccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCC
Q 006794 285 TRVKLQAL--NITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLN 362 (631)
Q Consensus 285 ~~L~l~~~--~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 362 (631)
+.|++++. ++....+..+...||++.+|+++.+..+.++.+..+. .++.|++|.++-|..+....+..+ ...|.
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~---kf~~L~~lSlsRCY~i~p~~~~~l-~s~ps 364 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---KFNYLQHLSLSRCYDIIPETLLEL-NSKPS 364 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH---hcchheeeehhhhcCCChHHeeee-ccCcc
Confidence 44444442 2333455666667777777777777666665544443 356666666666665554443333 23466
Q ss_pred cCeEEcCCCCCCCHHHHHHHHHhcCCCC
Q 006794 363 LKQMCLRKCCFVSDNGLVAFSKAAGSLE 390 (631)
Q Consensus 363 L~~L~l~~~~~~~~~~l~~l~~~~~~L~ 390 (631)
|.+|++.+| ++|..++-+...+++|+
T Consensus 365 l~yLdv~g~--vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 365 LVYLDVFGC--VSDTTMELLKEMLSHLK 390 (419)
T ss_pred eEEEEeccc--cCchHHHHHHHhCcccc
Confidence 666666664 44544444444455443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=2e-19 Score=204.25 Aligned_cols=107 Identities=22% Similarity=0.214 Sum_probs=71.2
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 574 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~ 574 (631)
+|+.|++++| .++......+. .+++|+.|++++| .+.......+. .+++|+.|+|++|.++......+. .+++
T Consensus 476 ~L~~L~ls~n-~l~~~~~~~~~--~l~~L~~L~Ls~N-~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~ 548 (968)
T PLN00113 476 RLENLDLSRN-QFSGAVPRKLG--SLSELMQLKLSEN-KLSGEIPDELS-SCKKLVSLDLSHNQLSGQIPASFS--EMPV 548 (968)
T ss_pred cceEEECcCC-ccCCccChhhh--hhhccCEEECcCC-cceeeCChHHc-CccCCCEEECCCCcccccCChhHh--Cccc
Confidence 6788888775 44433333333 3678888888884 66543333333 488899999999988765555555 6778
Q ss_pred ccEEeccCCCCCCcchHHHHHHhcCccccccccccc
Q 006794 575 LQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCN 610 (631)
Q Consensus 575 L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~ 610 (631)
|+.|++++|. ++...... ....++|+.|++++|+
T Consensus 549 L~~L~Ls~N~-l~~~~p~~-l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 549 LSQLDLSQNQ-LSGEIPKN-LGNVESLVQVNISHNH 582 (968)
T ss_pred CCEEECCCCc-ccccCChh-HhcCcccCEEeccCCc
Confidence 9999999876 54333333 3445678999998865
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=3.6e-19 Score=202.09 Aligned_cols=423 Identities=17% Similarity=0.084 Sum_probs=203.2
Q ss_pred CCCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHh
Q 006794 147 HGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAE 226 (631)
Q Consensus 147 ~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 226 (631)
.+.|+.|+++++. +.......+...+++|++|+++++. +..... ...+++|++|+++++ .++.. ++....
T Consensus 92 l~~L~~L~Ls~n~----~~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~~p---~~~l~~L~~L~Ls~n-~~~~~-~p~~~~ 161 (968)
T PLN00113 92 LPYIQTINLSNNQ----LSGPIPDDIFTTSSSLRYLNLSNNN-FTGSIP---RGSIPNLETLDLSNN-MLSGE-IPNDIG 161 (968)
T ss_pred CCCCCEEECCCCc----cCCcCChHHhccCCCCCEEECcCCc-cccccC---ccccCCCCEEECcCC-ccccc-CChHHh
Confidence 4788888888763 2222222333456788888887653 321111 124577777777764 33321 222334
Q ss_pred hCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhcc
Q 006794 227 NCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYG 306 (631)
Q Consensus 227 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 306 (631)
.+++|++|+++++ .+.......+.. +++|++|++++|..... ... ...... .|+.|++..+.+.+.....+ ..+
T Consensus 162 ~l~~L~~L~L~~n-~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~-~p~-~l~~l~-~L~~L~L~~n~l~~~~p~~l-~~l 235 (968)
T PLN00113 162 SFSSLKVLDLGGN-VLVGKIPNSLTN-LTSLEFLTLASNQLVGQ-IPR-ELGQMK-SLKWIYLGYNNLSGEIPYEI-GGL 235 (968)
T ss_pred cCCCCCEEECccC-cccccCChhhhh-CcCCCeeeccCCCCcCc-CCh-HHcCcC-CccEEECcCCccCCcCChhH-hcC
Confidence 5777777777764 233233333444 67777777776542211 001 111122 26666666666554333333 234
Q ss_pred ccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhc
Q 006794 307 KALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAA 386 (631)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 386 (631)
++|+.|+++++.... .. ...+..+++|+.|+++++. +.... ......+++|++|++++|. +... +......+
T Consensus 236 ~~L~~L~L~~n~l~~-~~---p~~l~~l~~L~~L~L~~n~-l~~~~-p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~~~~l 307 (968)
T PLN00113 236 TSLNHLDLVYNNLTG-PI---PSSLGNLKNLQYLFLYQNK-LSGPI-PPSIFSLQKLISLDLSDNS-LSGE-IPELVIQL 307 (968)
T ss_pred CCCCEEECcCceecc-cc---ChhHhCCCCCCEEECcCCe-eeccC-chhHhhccCcCEEECcCCe-eccC-CChhHcCC
Confidence 666666666553211 00 0112344566666666553 21111 1111233556666665542 2111 11222345
Q ss_pred CCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCC-------------
Q 006794 387 GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPG------------- 453 (631)
Q Consensus 387 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------- 453 (631)
++|+.|++++|....... .. ...+++|+.|++++|...... +..+..+++|+.|++++|..
T Consensus 308 ~~L~~L~l~~n~~~~~~~--~~-~~~l~~L~~L~L~~n~l~~~~---p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIP--VA-LTSLPRLQVLQLWSNKFSGEI---PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred CCCcEEECCCCccCCcCC--hh-HhcCCCCCEEECcCCCCcCcC---ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 555666555543211110 00 111255555555554332222 11123344455555544431
Q ss_pred ----------CCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCccc
Q 006794 454 ----------FGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETL 523 (631)
Q Consensus 454 ----------~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L 523 (631)
+.......+ ..+++|+.|++.++ .++... ...+...+ .|+.|+++++ .++......+. .+++|
T Consensus 382 L~~L~l~~n~l~~~~p~~~-~~~~~L~~L~L~~n-~l~~~~-p~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~--~l~~L 454 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSL-GACRSLRRVRLQDN-SFSGEL-PSEFTKLP-LVYFLDISNN-NLQGRINSRKW--DMPSL 454 (968)
T ss_pred CCEEECcCCEecccCCHHH-hCCCCCCEEECcCC-EeeeEC-ChhHhcCC-CCCEEECcCC-cccCccChhhc--cCCCC
Confidence 111111111 23466666666653 222211 11122222 6677777663 33332222222 36777
Q ss_pred CeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCcccc
Q 006794 524 ELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVG 603 (631)
Q Consensus 524 ~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~ 603 (631)
+.|++++| .+....... . ..++|+.|++++|.+++.....+. .+++|+.|++++|. ++....+. ...+++|++
T Consensus 455 ~~L~L~~n-~~~~~~p~~-~-~~~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~ 527 (968)
T PLN00113 455 QMLSLARN-KFFGGLPDS-F-GSKRLENLDLSRNQFSGAVPRKLG--SLSELMQLKLSENK-LSGEIPDE-LSSCKKLVS 527 (968)
T ss_pred cEEECcCc-eeeeecCcc-c-ccccceEEECcCCccCCccChhhh--hhhccCEEECcCCc-ceeeCChH-HcCccCCCE
Confidence 77777774 333211111 1 246788888888887765444444 67789999999965 54433333 344667999
Q ss_pred cccccccCCCH
Q 006794 604 LNLQNCNSINS 614 (631)
Q Consensus 604 L~l~~c~~l~~ 614 (631)
|++++| .++.
T Consensus 528 L~Ls~N-~l~~ 537 (968)
T PLN00113 528 LDLSHN-QLSG 537 (968)
T ss_pred EECCCC-cccc
Confidence 999984 4543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=1.3e-19 Score=174.81 Aligned_cols=380 Identities=17% Similarity=0.226 Sum_probs=213.7
Q ss_pred CCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCC
Q 006794 177 PSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRN 256 (631)
Q Consensus 177 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 256 (631)
+.-+.|++++. .+.+.++..+. .+|+|+++++.. +.++. ++.+.....+|+.|+|.+ +.++...-+.+.. .|.
T Consensus 78 ~~t~~LdlsnN-kl~~id~~~f~-nl~nLq~v~l~~-N~Lt~--IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~-l~a 150 (873)
T KOG4194|consen 78 SQTQTLDLSNN-KLSHIDFEFFY-NLPNLQEVNLNK-NELTR--IPRFGHESGHLEKLDLRH-NLISSVTSEELSA-LPA 150 (873)
T ss_pred cceeeeecccc-ccccCcHHHHh-cCCcceeeeecc-chhhh--cccccccccceeEEeeec-cccccccHHHHHh-Hhh
Confidence 35566777664 45655554443 667777777765 23332 333333345677777765 3343333333333 556
Q ss_pred CcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCC
Q 006794 257 LQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQK 336 (631)
Q Consensus 257 L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 336 (631)
|+.|+++.+. +.......+.. ..++++|+|..+.+++.....+ .++.+
T Consensus 151 lrslDLSrN~-is~i~~~sfp~--~~ni~~L~La~N~It~l~~~~F-----------------------------~~lns 198 (873)
T KOG4194|consen 151 LRSLDLSRNL-ISEIPKPSFPA--KVNIKKLNLASNRITTLETGHF-----------------------------DSLNS 198 (873)
T ss_pred hhhhhhhhch-hhcccCCCCCC--CCCceEEeeccccccccccccc-----------------------------cccch
Confidence 6666666432 11110000000 0124444444444433222222 23346
Q ss_pred cceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHH-HHHHHHHhcCCCCeEeccCCC--CCchhhHHHHHhccc
Q 006794 337 LVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDN-GLVAFSKAAGSLEILQLEECN--RVSQSGILGVVSNSA 413 (631)
Q Consensus 337 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~ 413 (631)
|..|.++.+. ++..+...+ +.+|+|+.|+|..+ .+.-. ++ .++.+++|+.|.+..+. .+.+..+..+
T Consensus 199 L~tlkLsrNr-ittLp~r~F-k~L~~L~~LdLnrN-~irive~l--tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l----- 268 (873)
T KOG4194|consen 199 LLTLKLSRNR-ITTLPQRSF-KRLPKLESLDLNRN-RIRIVEGL--TFQGLPSLQNLKLQRNDISKLDDGAFYGL----- 268 (873)
T ss_pred heeeecccCc-ccccCHHHh-hhcchhhhhhcccc-ceeeehhh--hhcCchhhhhhhhhhcCcccccCcceeee-----
Confidence 6677776654 444433333 44677888887764 33221 21 23456777777776543 2334334333
Q ss_pred CCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCC---chhhHHHHh
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGIT---DVGIFPLLE 490 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~---~~~~~~l~~ 490 (631)
.++++|++..+. +..+. ..++-++..|+.|+++.+. +........ +.+++|+.|+|++ +.++ ...+..+
T Consensus 269 ~kme~l~L~~N~-l~~vn--~g~lfgLt~L~~L~lS~Na-I~rih~d~W-sftqkL~~LdLs~-N~i~~l~~~sf~~L-- 340 (873)
T KOG4194|consen 269 EKMEHLNLETNR-LQAVN--EGWLFGLTSLEQLDLSYNA-IQRIHIDSW-SFTQKLKELDLSS-NRITRLDEGSFRVL-- 340 (873)
T ss_pred cccceeecccch-hhhhh--cccccccchhhhhccchhh-hheeecchh-hhcccceeEeccc-cccccCChhHHHHH--
Confidence 778888887743 22221 1224467888888888763 322222222 2358999999987 4443 3444333
Q ss_pred hcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCC---hHHHHHHHhcCCcCCEEEecCCccChhhHHhh
Q 006794 491 SCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKIT---DASLVAIGNNCMFLSYLDVSKCAITDMGISAL 567 (631)
Q Consensus 491 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~---~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l 567 (631)
..|++|+|+. +.++...-..+- .+++|+.|+|++ +.+. +.+...+ .++++|++|++.+|++....-..+
T Consensus 341 ---~~Le~LnLs~-Nsi~~l~e~af~--~lssL~~LdLr~-N~ls~~IEDaa~~f-~gl~~LrkL~l~gNqlk~I~krAf 412 (873)
T KOG4194|consen 341 ---SQLEELNLSH-NSIDHLAEGAFV--GLSSLHKLDLRS-NELSWCIEDAAVAF-NGLPSLRKLRLTGNQLKSIPKRAF 412 (873)
T ss_pred ---HHhhhhcccc-cchHHHHhhHHH--HhhhhhhhcCcC-CeEEEEEecchhhh-ccchhhhheeecCceeeecchhhh
Confidence 2788999987 455543333332 478999999988 5553 1232333 459999999999998665444444
Q ss_pred hhccCCCccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCHHHHHHHHhhccc
Q 006794 568 SHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWR 626 (631)
Q Consensus 568 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~l~~~l~~ 626 (631)
. +++.|+.|+|.+++ |.......+... .|++|.+..-.-+.+--++++..++.+
T Consensus 413 s--gl~~LE~LdL~~Na-iaSIq~nAFe~m--~Lk~Lv~nSssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 413 S--GLEALEHLDLGDNA-IASIQPNAFEPM--ELKELVMNSSSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred c--cCcccceecCCCCc-ceeecccccccc--hhhhhhhcccceEEeccHHHHHHHHHh
Confidence 4 77799999999965 655555555544 588888877666778888888887754
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.63 E-value=8.3e-17 Score=155.73 Aligned_cols=344 Identities=19% Similarity=0.185 Sum_probs=206.7
Q ss_pred CCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCC--cchhhHHHHHhhh
Q 006794 203 HLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPL--VRDQGISSLLSSA 280 (631)
Q Consensus 203 ~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~l~~~~ 280 (631)
+.-+.|++++ +.+.+..+..+ .++|+|+.+++.. +.+ ..++.+.....+|+.|++.++.- ++.+.+..+..
T Consensus 78 ~~t~~Ldlsn-Nkl~~id~~~f-~nl~nLq~v~l~~-N~L--t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a-- 150 (873)
T KOG4194|consen 78 SQTQTLDLSN-NKLSHIDFEFF-YNLPNLQEVNLNK-NEL--TRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA-- 150 (873)
T ss_pred cceeeeeccc-cccccCcHHHH-hcCCcceeeeecc-chh--hhcccccccccceeEEeeeccccccccHHHHHhHhh--
Confidence 3455677776 45554444333 3577777777765 222 22334444455666666665431 11222222221
Q ss_pred hhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcC
Q 006794 281 SSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGC 360 (631)
Q Consensus 281 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 360 (631)
++.|+|+.+.++......+ ....++++|+++++. ++......+ ..+
T Consensus 151 ---lrslDLSrN~is~i~~~sf-----------------------------p~~~ni~~L~La~N~-It~l~~~~F-~~l 196 (873)
T KOG4194|consen 151 ---LRSLDLSRNLISEIPKPSF-----------------------------PAKVNIKKLNLASNR-ITTLETGHF-DSL 196 (873)
T ss_pred ---hhhhhhhhchhhcccCCCC-----------------------------CCCCCceEEeecccc-ccccccccc-ccc
Confidence 4444544444332211111 223678999998875 655544443 345
Q ss_pred CCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCc---hhhHHHHHhcccCCCcEEeccccc--CCCccccccc
Q 006794 361 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVS---QSGILGVVSNSASKLKSLTLVKCM--GIKDMATEMP 435 (631)
Q Consensus 361 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~ 435 (631)
.+|.+|.|+.+ .++.-.. ..++.+++|+.|++..+. +. ...+.+ +++|+.|.+..+. .+.|-
T Consensus 197 nsL~tlkLsrN-rittLp~-r~Fk~L~~L~~LdLnrN~-irive~ltFqg-----L~Sl~nlklqrN~I~kL~DG----- 263 (873)
T KOG4194|consen 197 NSLLTLKLSRN-RITTLPQ-RSFKRLPKLESLDLNRNR-IRIVEGLTFQG-----LPSLQNLKLQRNDISKLDDG----- 263 (873)
T ss_pred chheeeecccC-cccccCH-HHhhhcchhhhhhccccc-eeeehhhhhcC-----chhhhhhhhhhcCcccccCc-----
Confidence 68999999985 4443322 334568999999998743 22 222222 3888888887643 22222
Q ss_pred cCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHH
Q 006794 436 MLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLAL 515 (631)
Q Consensus 436 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l 515 (631)
.+-.+.++++|++..+. +....-.++. .+..|++|++++ +.+..-.+..+ ..|+ +|+.|+|++ +.++...-..+
T Consensus 264 ~Fy~l~kme~l~L~~N~-l~~vn~g~lf-gLt~L~~L~lS~-NaI~rih~d~W-sftq-kL~~LdLs~-N~i~~l~~~sf 337 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNR-LQAVNEGWLF-GLTSLEQLDLSY-NAIQRIHIDSW-SFTQ-KLKELDLSS-NRITRLDEGSF 337 (873)
T ss_pred ceeeecccceeecccch-hhhhhccccc-ccchhhhhccch-hhhheeecchh-hhcc-cceeEeccc-cccccCChhHH
Confidence 12358899999999875 3333333333 358999999998 44432221111 1233 899999998 56665555544
Q ss_pred HhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh---hhHHhhhhccCCCccEEeccCCCCCCcchHH
Q 006794 516 ARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD---MGISALSHAEQLNLQVLSLSSCSEVSNKSMP 592 (631)
Q Consensus 516 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~---~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~ 592 (631)
.. +..|++|.|++ +.++...-..+ ..+++|++|+|++|.++. ++...+. ++++|++|.+.|+ ++....-.
T Consensus 338 ~~--L~~Le~LnLs~-Nsi~~l~e~af-~~lssL~~LdLr~N~ls~~IEDaa~~f~--gl~~LrkL~l~gN-qlk~I~kr 410 (873)
T KOG4194|consen 338 RV--LSQLEELNLSH-NSIDHLAEGAF-VGLSSLHKLDLRSNELSWCIEDAAVAFN--GLPSLRKLRLTGN-QLKSIPKR 410 (873)
T ss_pred HH--HHHhhhhcccc-cchHHHHhhHH-HHhhhhhhhcCcCCeEEEEEecchhhhc--cchhhhheeecCc-eeeecchh
Confidence 43 78899999999 78876543333 458999999999997432 2334444 7999999999994 57555444
Q ss_pred HHHHhcCcccccccccccCCCHH
Q 006794 593 ALKKLGKTLVGLNLQNCNSINSS 615 (631)
Q Consensus 593 ~l~~~~~~L~~L~l~~c~~l~~~ 615 (631)
.+.+ .++|+.|++.+ +.|...
T Consensus 411 Afsg-l~~LE~LdL~~-NaiaSI 431 (873)
T KOG4194|consen 411 AFSG-LEALEHLDLGD-NAIASI 431 (873)
T ss_pred hhcc-CcccceecCCC-Ccceee
Confidence 5444 55799999999 666543
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.62 E-value=3.6e-14 Score=140.23 Aligned_cols=178 Identities=27% Similarity=0.379 Sum_probs=92.9
Q ss_pred CCCceEeccCCCCCCHHHHHHHh---hcC-CCCcEEecccccCCCchhhHHHHhhcc--cCccEEecCCCCCCchHHHHH
Q 006794 441 CSLRSLSIRNCPGFGNASLAMLG---KLC-PQLQHVDLSGLYGITDVGIFPLLESCK--AGLVKVNLSGCLNLTDEVVLA 514 (631)
Q Consensus 441 ~~L~~L~l~~~~~~~~~~l~~l~---~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~--~~L~~L~l~~c~~l~~~~~~~ 514 (631)
++|++|++++|. +++.....+. ..+ ++|+.|++++| .++..+...+..... ++|++|++++| .+++..+..
T Consensus 108 ~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~ 184 (319)
T cd00116 108 SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRA 184 (319)
T ss_pred CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHH
Confidence 445666665554 3333222221 223 56677777663 344333333222211 25777777664 455444443
Q ss_pred HHh--hcCcccCeecccCCCCCChHHHHHHH---hcCCcCCEEEecCCccChhhHHhhhhc---cCCCccEEeccCCCCC
Q 006794 515 LAR--LHSETLELLNLDGCRKITDASLVAIG---NNCMFLSYLDVSKCAITDMGISALSHA---EQLNLQVLSLSSCSEV 586 (631)
Q Consensus 515 l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~~l~~~~~~~l~~~---~~~~L~~L~l~~c~~l 586 (631)
+.. ...++|++|++++| .+++.+...+. ..+++|++|++++|.+++.++..+... ..+.|++|++++|. +
T Consensus 185 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i 262 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-I 262 (319)
T ss_pred HHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-C
Confidence 332 02346777777664 56555544333 345667777777777766555554411 12567777777754 5
Q ss_pred CcchHHHHHHh---cCcccccccccccCCCHHHHHHHHhhc
Q 006794 587 SNKSMPALKKL---GKTLVGLNLQNCNSINSSTVARLVESL 624 (631)
Q Consensus 587 ~~~~~~~l~~~---~~~L~~L~l~~c~~l~~~~~~~l~~~l 624 (631)
++.+...+... .++|+++++++ +.+++.+...+.+.+
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~~~~ 302 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAESL 302 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHHHHH
Confidence 54444333222 34567777777 567766666665544
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.60 E-value=1.6e-13 Score=135.52 Aligned_cols=163 Identities=31% Similarity=0.356 Sum_probs=103.9
Q ss_pred CCCceEeccCCCCCCHHH---HHHHhhcCCCCcEEecccccCCCchhhHHHHhhcc--cCccEEecCCCCCCchHHHHHH
Q 006794 441 CSLRSLSIRNCPGFGNAS---LAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK--AGLVKVNLSGCLNLTDEVVLAL 515 (631)
Q Consensus 441 ~~L~~L~l~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~--~~L~~L~l~~c~~l~~~~~~~l 515 (631)
++|++|++++|. ++... +......+++|++|++++ ..+++.++..+..... ++|+.|++++| .+++.....+
T Consensus 137 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l 213 (319)
T cd00116 137 PALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLAN-NGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASAL 213 (319)
T ss_pred CCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcC-CCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHH
Confidence 666777777665 33222 222333456788888887 4566555554433221 37888888886 5665554443
Q ss_pred Hhh--cCcccCeecccCCCCCChHHHHHHHhcC----CcCCEEEecCCccChhhHHhhhh--ccCCCccEEeccCCCCCC
Q 006794 516 ARL--HSETLELLNLDGCRKITDASLVAIGNNC----MFLSYLDVSKCAITDMGISALSH--AEQLNLQVLSLSSCSEVS 587 (631)
Q Consensus 516 ~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~~~----~~L~~L~L~~~~l~~~~~~~l~~--~~~~~L~~L~l~~c~~l~ 587 (631)
... .+++|++|++++| .+++.++..+...+ +.|++|++++|.+++.+...+.. ..+++|+++++++|. ++
T Consensus 214 ~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~ 291 (319)
T cd00116 214 AETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FG 291 (319)
T ss_pred HHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-Cc
Confidence 321 4678899999884 78887777766544 68999999999888666554431 255788999998854 76
Q ss_pred cchHHHHH----HhcCccccccccc
Q 006794 588 NKSMPALK----KLGKTLVGLNLQN 608 (631)
Q Consensus 588 ~~~~~~l~----~~~~~L~~L~l~~ 608 (631)
+.....+. ...+.|++|+|.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 292 EEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHHHHhhcCCchhhcccCC
Confidence 55443333 2225688888876
No 10
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.60 E-value=2.6e-14 Score=150.26 Aligned_cols=277 Identities=32% Similarity=0.524 Sum_probs=171.9
Q ss_pred hCCCCCEeeccCCC-CCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCC-CCcchhhHHHHHh
Q 006794 201 ECHLLEKLELCHCP-SISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDC-PLVRDQGISSLLS 278 (631)
Q Consensus 201 ~~~~L~~L~L~~~~-~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~ 278 (631)
.+..++.+.+..+. .........+...++.|+.|.+.+|..+++..+..+...+++|++|+++++ ......+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---- 234 (482)
T KOG1947|consen 159 GLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL---- 234 (482)
T ss_pred HHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH----
Confidence 44556666655443 233344455555577888888887777777666667777788888877763 211111100
Q ss_pred hhhhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhh
Q 006794 279 SASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGK 358 (631)
Q Consensus 279 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 358 (631)
.......+++|+.|+++++..+++..+..+..
T Consensus 235 ------------------------------------------------~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 235 ------------------------------------------------LLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred ------------------------------------------------hhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 00011234667777777776677888888888
Q ss_pred cCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCC
Q 006794 359 GCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLS 438 (631)
Q Consensus 359 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 438 (631)
.|++|++|.+.+|..+++.++..+...|+.|++|+++.|..+++.++...... +++|+.|.+..+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~-c~~l~~l~~~~~~------------- 332 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN-CPNLRELKLLSLN------------- 332 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh-CcchhhhhhhhcC-------------
Confidence 88899999888887788888888888888899999998888888777777444 4777776655532
Q ss_pred CCCCCceEeccCCCCCC-HHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHh
Q 006794 439 PNCSLRSLSIRNCPGFG-NASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALAR 517 (631)
Q Consensus 439 ~~~~L~~L~l~~~~~~~-~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 517 (631)
.++.++.+.+.++.... +......+..+++++++.+..+. ..+.+... .+.+|+.++ ..+.....
T Consensus 333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~------------~l~gc~~l~-~~l~~~~~ 398 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLEL------------SLRGCPNLT-ESLELRLC 398 (482)
T ss_pred CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHH------------HhcCCcccc-hHHHHHhc
Confidence 24555556665554444 35555566666777777776655 44444322 233444554 33333332
Q ss_pred hcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCc
Q 006794 518 LHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCA 558 (631)
Q Consensus 518 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~ 558 (631)
...+++.|.++.|..+++..+......+.+++.+++.++.
T Consensus 399 -~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 399 -RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred -cCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 2333667777776666666665555445556666666654
No 11
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6.6e-15 Score=131.03 Aligned_cols=170 Identities=22% Similarity=0.361 Sum_probs=111.8
Q ss_pred CChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCC
Q 006794 348 VTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGI 427 (631)
Q Consensus 348 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 427 (631)
+.+.....++++ .+|+.|+++.|..++..++.-++.+|.+|.+|+++.|...++. +.....+..++|+.|++++|.
T Consensus 222 LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~r-- 297 (419)
T KOG2120|consen 222 LDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYR-- 297 (419)
T ss_pred cCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhH--
Confidence 444444444433 6677777777777777777777777777777777777654444 333333333455555555432
Q ss_pred CccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCC
Q 006794 428 KDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNL 507 (631)
Q Consensus 428 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l 507 (631)
+++....+..+.+.||+|.+|+++.|..++++.+..+++-. .|++|.++.|..+
T Consensus 298 ------------------------rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~--~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 298 ------------------------RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN--YLQHLSLSRCYDI 351 (419)
T ss_pred ------------------------hhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc--hheeeehhhhcCC
Confidence 23445567778888899999999988888885555554443 7888888888877
Q ss_pred chHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCE
Q 006794 508 TDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSY 551 (631)
Q Consensus 508 ~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~ 551 (631)
....+-.+.. .|+|.+|++.+| +.|...+.+...|++|+.
T Consensus 352 ~p~~~~~l~s--~psl~yLdv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 352 IPETLLELNS--KPSLVYLDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred ChHHeeeecc--CcceEEEEeccc--cCchHHHHHHHhCccccc
Confidence 7665554443 688888888885 556666666666777764
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.53 E-value=2.8e-14 Score=162.38 Aligned_cols=291 Identities=17% Similarity=0.237 Sum_probs=152.6
Q ss_pred ccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCc
Q 006794 284 LTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNL 363 (631)
Q Consensus 284 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 363 (631)
|..|++.++.+..... -...+++|+.|+++++..+.... ....+++|+.|++.+|..+...+ .....+++|
T Consensus 613 L~~L~L~~s~l~~L~~--~~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp--~si~~L~~L 683 (1153)
T PLN03210 613 LVKLQMQGSKLEKLWD--GVHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELP--SSIQYLNKL 683 (1153)
T ss_pred CcEEECcCcccccccc--ccccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccc--hhhhccCCC
Confidence 5555555544432211 11235666777766654332211 23445677777777765443321 222445677
Q ss_pred CeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCC
Q 006794 364 KQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSL 443 (631)
Q Consensus 364 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 443 (631)
+.|++.+|..+..-. ... .+++|+.|++++|..+.... ....+|+.|+++++. +..++. ...+++|
T Consensus 684 ~~L~L~~c~~L~~Lp--~~i-~l~sL~~L~Lsgc~~L~~~p------~~~~nL~~L~L~~n~-i~~lP~----~~~l~~L 749 (1153)
T PLN03210 684 EDLDMSRCENLEILP--TGI-NLKSLYRLNLSGCSRLKSFP------DISTNISWLDLDETA-IEEFPS----NLRLENL 749 (1153)
T ss_pred CEEeCCCCCCcCccC--CcC-CCCCCCEEeCCCCCCccccc------cccCCcCeeecCCCc-cccccc----ccccccc
Confidence 777777765443211 111 45677777777765443221 112567777776643 222211 1135666
Q ss_pred ceEeccCCCCCCH----HH-HHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhh
Q 006794 444 RSLSIRNCPGFGN----AS-LAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARL 518 (631)
Q Consensus 444 ~~L~l~~~~~~~~----~~-l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 518 (631)
++|.+.++....- .. .......+++|+.|++++|..+.. +...+..++ +|+.|++++|..+...... .
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~--lP~si~~L~-~L~~L~Ls~C~~L~~LP~~--~-- 822 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE--LPSSIQNLH-KLEHLEIENCINLETLPTG--I-- 822 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccc--cChhhhCCC-CCCEEECCCCCCcCeeCCC--C--
Confidence 6666655321000 00 001112246777777777554332 112233333 7888888877665532211 1
Q ss_pred cCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhc
Q 006794 519 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLG 598 (631)
Q Consensus 519 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 598 (631)
.+++|+.|++++|..+.. +....++|+.|+|++|.++... ..+. .+++|+.|++++|++++.. +.-....
T Consensus 823 ~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~i~~iP-~si~--~l~~L~~L~L~~C~~L~~l--~~~~~~L 892 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRT-----FPDISTNISDLNLSRTGIEEVP-WWIE--KFSNLSFLDMNGCNNLQRV--SLNISKL 892 (1153)
T ss_pred CccccCEEECCCCCcccc-----ccccccccCEeECCCCCCccCh-HHHh--cCCCCCEEECCCCCCcCcc--Ccccccc
Confidence 357778888888766542 2223467788888877766422 1222 5667888888888777542 2222344
Q ss_pred CcccccccccccCCCH
Q 006794 599 KTLVGLNLQNCNSINS 614 (631)
Q Consensus 599 ~~L~~L~l~~c~~l~~ 614 (631)
++|+.+++++|+.++.
T Consensus 893 ~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 893 KHLETVDFSDCGALTE 908 (1153)
T ss_pred cCCCeeecCCCccccc
Confidence 5677777788777664
No 13
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.50 E-value=2.2e-13 Score=143.13 Aligned_cols=179 Identities=30% Similarity=0.494 Sum_probs=97.9
Q ss_pred CCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCC---CCCCchHHHHHHH
Q 006794 440 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSG---CLNLTDEVVLALA 516 (631)
Q Consensus 440 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~---c~~l~~~~~~~l~ 516 (631)
+++|++|.+..|..+++..+..+++.|++|++|++++|..+++.++..+...|+ +++.|.+.. |..+++..+....
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~-~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP-NLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc-chhhhhhhhcCCCccHHHHHHHHhh
Confidence 445555554445445555555555555666666666655555555555555554 444443332 2234444333322
Q ss_pred hhcC-cccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCc-cChhhHHhhhhccCCCccEEeccCCCCCCcchHHHH
Q 006794 517 RLHS-ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCA-ITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPAL 594 (631)
Q Consensus 517 ~~~~-~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l 594 (631)
. .. ..+..+.+.+|+++++..+.... .......+.+.+|. ++ ..+.... ..+..++.|+++.|..+++..+...
T Consensus 347 ~-~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~-~~~~~l~~L~l~~~~~~t~~~l~~~ 422 (482)
T KOG1947|consen 347 T-LTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRL-CRSDSLRVLNLSDCRLVTDKGLRCL 422 (482)
T ss_pred c-cCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHh-ccCCccceEecccCccccccchHHH
Confidence 2 11 13333334444444333333322 11111123333443 33 3333333 2333489999999999999988876
Q ss_pred HHhcCcccccccccccCCCHHHHHHHHhh
Q 006794 595 KKLGKTLVGLNLQNCNSINSSTVARLVES 623 (631)
Q Consensus 595 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 623 (631)
...+.++..+++.+|+.++..+...+.+.
T Consensus 423 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 423 ADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred hhhhhccccCCccCcccccchhhhhhhcc
Confidence 66577899999999999999888776655
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=1.1e-12 Score=149.33 Aligned_cols=340 Identities=17% Similarity=0.177 Sum_probs=147.7
Q ss_pred hcCCCCCeEeecCCCC--CCh--hhHHHHHHhC-CCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHH
Q 006794 174 RGCPSLKSLSLWNVPS--VGD--EGLLEIAKEC-HLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQ 248 (631)
Q Consensus 174 ~~~~~L~~L~l~~~~~--~~~--~~~~~~~~~~-~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~ 248 (631)
..+++|+.|.+..... ... ..+..-...+ ++|+.|++.++ .+.. ++..+ ...+|+.|++.++. +.. ...
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~--lP~~f-~~~~L~~L~L~~s~-l~~-L~~ 628 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRC--MPSNF-RPENLVKLQMQGSK-LEK-LWD 628 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCC--CCCcC-CccCCcEEECcCcc-ccc-ccc
Confidence 4688999998864310 000 0011111133 46888888774 2221 11111 25788888888742 321 111
Q ss_pred HHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHh
Q 006794 249 AIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVM 328 (631)
Q Consensus 249 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 328 (631)
.+ ..+++|+.|+++++..+...+- ...++ .|+.|++.++......... ...+++|+.|++++|..+...
T Consensus 629 ~~-~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~-~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~L----- 697 (1153)
T PLN03210 629 GV-HSLTGLRNIDLRGSKNLKEIPD---LSMAT-NLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEIL----- 697 (1153)
T ss_pred cc-ccCCCCCEEECCCCCCcCcCCc---cccCC-cccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCcc-----
Confidence 22 3378888888887654332211 11111 2666666553221111111 123456666666655433221
Q ss_pred hccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCch----hh
Q 006794 329 GNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQ----SG 404 (631)
Q Consensus 329 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~----~~ 404 (631)
+....+++|+.|++++|..+.. +....++|+.|++.++. +.. ++... .+++|++|.+.++..... ..
T Consensus 698 p~~i~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~-i~~--lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 698 PTGINLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDETA-IEE--FPSNL-RLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CCcCCCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCCc-ccc--ccccc-cccccccccccccchhhccccccc
Confidence 1112456666666666643321 11122456666665542 211 11111 245555555544321000 00
Q ss_pred HHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchh
Q 006794 405 ILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVG 484 (631)
Q Consensus 405 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~ 484 (631)
.........++|+.|++++|..+..++ ..+..+++|+.|++++|..+...+.. . .+++|+.|++++|..+..-.
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP---~si~~L~~L~~L~Ls~C~~L~~LP~~--~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELP---SSIQNLHKLEHLEIENCINLETLPTG--I-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccC---hhhhCCCCCCEEECCCCCCcCeeCCC--C-CccccCEEECCCCCcccccc
Confidence 000111112456666666555444432 12344556666666655443321100 0 23555555555554432110
Q ss_pred hHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCC
Q 006794 485 IFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKC 557 (631)
Q Consensus 485 ~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~ 557 (631)
. .+.+|+.|++++ +.++.... .+. .+++|+.|++++|+++..... -...+++|+.+++++|
T Consensus 843 --~----~~~nL~~L~Ls~-n~i~~iP~-si~--~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 843 --D----ISTNISDLNLSR-TGIEEVPW-WIE--KFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDC 903 (1153)
T ss_pred --c----cccccCEeECCC-CCCccChH-HHh--cCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCC
Confidence 0 011455555554 23332211 111 345555555555555543221 1122445555555554
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.41 E-value=1.1e-14 Score=142.51 Aligned_cols=371 Identities=15% Similarity=0.154 Sum_probs=196.1
Q ss_pred CCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCC
Q 006794 176 CPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCR 255 (631)
Q Consensus 176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 255 (631)
+|-++-.++++. .+....++.-...+.+++.|.|.. ..+.. ++.-...+.+|++|++..+ ++. .....+.. +|
T Consensus 6 LpFVrGvDfsgN-DFsg~~FP~~v~qMt~~~WLkLnr-t~L~~--vPeEL~~lqkLEHLs~~HN-~L~-~vhGELs~-Lp 78 (1255)
T KOG0444|consen 6 LPFVRGVDFSGN-DFSGDRFPHDVEQMTQMTWLKLNR-TKLEQ--VPEELSRLQKLEHLSMAHN-QLI-SVHGELSD-LP 78 (1255)
T ss_pred cceeecccccCC-cCCCCcCchhHHHhhheeEEEech-hhhhh--ChHHHHHHhhhhhhhhhhh-hhH-hhhhhhcc-ch
Confidence 455666777764 344333333344566788888766 23321 3333345777888887753 221 22233444 67
Q ss_pred CCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCC
Q 006794 256 NLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQ 335 (631)
Q Consensus 256 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 335 (631)
.|+.+.+..+. +...++..-.-.... |+.|+|+.+.+...+-. ..+. .
T Consensus 79 ~LRsv~~R~N~-LKnsGiP~diF~l~d-Lt~lDLShNqL~EvP~~--LE~A----------------------------K 126 (1255)
T KOG0444|consen 79 RLRSVIVRDNN-LKNSGIPTDIFRLKD-LTILDLSHNQLREVPTN--LEYA----------------------------K 126 (1255)
T ss_pred hhHHHhhhccc-cccCCCCchhccccc-ceeeecchhhhhhcchh--hhhh----------------------------c
Confidence 77777666543 222222111111111 44445555444332111 1112 3
Q ss_pred CcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCC
Q 006794 336 KLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASK 415 (631)
Q Consensus 336 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 415 (631)
++-.|+++++. +...+ ..++-++..|-.|+|+++ .+ +.++.-...+..|++|.+++++ +....+.++ ..+..
T Consensus 127 n~iVLNLS~N~-IetIP-n~lfinLtDLLfLDLS~N-rL--e~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQL--Psmts 198 (1255)
T KOG0444|consen 127 NSIVLNLSYNN-IETIP-NSLFINLTDLLFLDLSNN-RL--EMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQL--PSMTS 198 (1255)
T ss_pred CcEEEEcccCc-cccCC-chHHHhhHhHhhhccccc-hh--hhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcC--ccchh
Confidence 44455555442 22111 112222344555555553 22 1122222344556666666544 222111111 11134
Q ss_pred CcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccC
Q 006794 416 LKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAG 495 (631)
Q Consensus 416 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 495 (631)
|+.|++++....- .-.+..+..+.+|..++++.+. ++-.+ ..+. .+++|+.|.|++ +.++.-.+.. ..+- +
T Consensus 199 L~vLhms~TqRTl--~N~Ptsld~l~NL~dvDlS~N~-Lp~vP-ecly-~l~~LrrLNLS~-N~iteL~~~~--~~W~-~ 269 (1255)
T KOG0444|consen 199 LSVLHMSNTQRTL--DNIPTSLDDLHNLRDVDLSENN-LPIVP-ECLY-KLRNLRRLNLSG-NKITELNMTE--GEWE-N 269 (1255)
T ss_pred hhhhhcccccchh--hcCCCchhhhhhhhhccccccC-CCcch-HHHh-hhhhhheeccCc-CceeeeeccH--HHHh-h
Confidence 4445555433211 1112334567788888888764 32111 1111 248888898888 5555322111 1111 7
Q ss_pred ccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCc
Q 006794 496 LVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNL 575 (631)
Q Consensus 496 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L 575 (631)
|++|++|. +.++.. ..+++ .+++|+.|.+.+ ++++.+++.+-.+.+.+|+.+..++|.+.- ..+.++ .|+.|
T Consensus 270 lEtLNlSr-NQLt~L-P~avc--KL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglc--RC~kL 341 (1255)
T KOG0444|consen 270 LETLNLSR-NQLTVL-PDAVC--KLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLC--RCVKL 341 (1255)
T ss_pred hhhhcccc-chhccc-hHHHh--hhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcccccc-Cchhhh--hhHHH
Confidence 89999988 455532 22333 478999999988 799888887766678889999998887432 233444 67799
Q ss_pred cEEeccCCCCCCcchHHHHHHhcCcccccccccccCCC
Q 006794 576 QVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSIN 613 (631)
Q Consensus 576 ~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~ 613 (631)
+.|.++.+..| +++.-..+.+.|+.|++...|++-
T Consensus 342 ~kL~L~~NrLi---TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 342 QKLKLDHNRLI---TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred HHhccccccee---echhhhhhcCCcceeeccCCcCcc
Confidence 99999886654 455556677789999999877754
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.32 E-value=4.5e-13 Score=137.36 Aligned_cols=246 Identities=24% Similarity=0.199 Sum_probs=134.7
Q ss_pred CCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhccc
Q 006794 334 LQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSA 413 (631)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 413 (631)
.++|+.|....+. +.... . ...-.+|+.++++.+. + ..++.....|.+|+.|...++.- .... .-+. ..
T Consensus 218 g~~l~~L~a~~n~-l~~~~--~-~p~p~nl~~~dis~n~-l--~~lp~wi~~~~nle~l~~n~N~l-~~lp--~ri~-~~ 286 (1081)
T KOG0618|consen 218 GPSLTALYADHNP-LTTLD--V-HPVPLNLQYLDISHNN-L--SNLPEWIGACANLEALNANHNRL-VALP--LRIS-RI 286 (1081)
T ss_pred CcchheeeeccCc-ceeec--c-ccccccceeeecchhh-h--hcchHHHHhcccceEecccchhH-HhhH--HHHh-hh
Confidence 3566666666654 22110 0 0112468888887743 2 23335556788888888776442 1111 1111 11
Q ss_pred CCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCC--CHHH-------HHHHhh--------------cCCCCc
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGF--GNAS-------LAMLGK--------------LCPQLQ 470 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~-------l~~l~~--------------~~~~L~ 470 (631)
..|+.|.+..|. +...++...+.+.|++|++..+..- .+.. +..+.. ..+.|+
T Consensus 287 ~~L~~l~~~~ne----l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 287 TSLVSLSAAYNE----LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ 362 (1081)
T ss_pred hhHHHHHhhhhh----hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence 455655555532 2222334456777888888776421 1111 111111 123355
Q ss_pred EEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCC
Q 006794 471 HVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLS 550 (631)
Q Consensus 471 ~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~ 550 (631)
.|++.+ +.++|..+..+.. .. +|+.|+|++ +.+....-.++. .++.|++|+|+| |+++... ..++. |+.|+
T Consensus 363 ~Lylan-N~Ltd~c~p~l~~-~~-hLKVLhLsy-NrL~~fpas~~~--kle~LeeL~LSG-NkL~~Lp-~tva~-~~~L~ 433 (1081)
T KOG0618|consen 363 ELYLAN-NHLTDSCFPVLVN-FK-HLKVLHLSY-NRLNSFPASKLR--KLEELEELNLSG-NKLTTLP-DTVAN-LGRLH 433 (1081)
T ss_pred HHHHhc-Ccccccchhhhcc-cc-ceeeeeecc-cccccCCHHHHh--chHHhHHHhccc-chhhhhh-HHHHh-hhhhH
Confidence 555555 5666655554432 22 788888887 344433333333 467788888888 6776554 33333 77777
Q ss_pred EEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhc-Cccccccccccc
Q 006794 551 YLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLG-KTLVGLNLQNCN 610 (631)
Q Consensus 551 ~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~-~~L~~L~l~~c~ 610 (631)
+|...+|.+.... .+. ..+.|+.++++. ++++...++. ..+ |+|++||++|..
T Consensus 434 tL~ahsN~l~~fP--e~~--~l~qL~~lDlS~-N~L~~~~l~~--~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFP--ELA--QLPQLKVLDLSC-NNLSEVTLPE--ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhcCCceeech--hhh--hcCcceEEeccc-chhhhhhhhh--hCCCcccceeeccCCc
Confidence 7777777655433 333 567888888876 4576666554 233 678888888854
No 17
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.31 E-value=3.2e-11 Score=110.56 Aligned_cols=218 Identities=25% Similarity=0.276 Sum_probs=130.1
Q ss_pred cCCCcCeEEcCCCCCC--CHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCcccccccc
Q 006794 359 GCLNLKQMCLRKCCFV--SDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPM 436 (631)
Q Consensus 359 ~~~~L~~L~l~~~~~~--~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 436 (631)
.+|+|+.|+|+++..- ...++..+..++..|++|.+.+|.. ...+-..+. ..|..|... ..
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~----~al~~l~~~------------kk 152 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLG----RALFELAVN------------KK 152 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHH----HHHHHHHHH------------hc
Confidence 4567777777775321 1245566667777788888877763 222211110 112222110 11
Q ss_pred CCCCCCCceEeccCCCCCC--HHHHHHHhhcCCCCcEEecccccCCCchhhHHH---HhhcccCccEEecCCCCCCchHH
Q 006794 437 LSPNCSLRSLSIRNCPGFG--NASLAMLGKLCPQLQHVDLSGLYGITDVGIFPL---LESCKAGLVKVNLSGCLNLTDEV 511 (631)
Q Consensus 437 ~~~~~~L~~L~l~~~~~~~--~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~~L~~L~l~~c~~l~~~~ 511 (631)
....+.|+.+....|+.-. ...+....+.+|.|+.+.++. +.+..+|+..+ +..|+ +|+.|+|.. +.++..+
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~-~LevLdl~D-Ntft~eg 229 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCP-HLEVLDLRD-NTFTLEG 229 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCC-cceeeeccc-chhhhHH
Confidence 2456778888887776332 334555566678999999998 67766666443 33466 888888877 5666655
Q ss_pred HHHHHhh--cCcccCeecccCCCCCChHHHHHHH----hcCCcCCEEEecCCccChhhHHhhhh--ccCCCccEEeccCC
Q 006794 512 VLALARL--HSETLELLNLDGCRKITDASLVAIG----NNCMFLSYLDVSKCAITDMGISALSH--AEQLNLQVLSLSSC 583 (631)
Q Consensus 512 ~~~l~~~--~~~~L~~L~l~~c~~l~~~~~~~l~----~~~~~L~~L~L~~~~l~~~~~~~l~~--~~~~~L~~L~l~~c 583 (631)
-.+++.. .+++|+.|+++.| .+.+.+...+. ...|+|+.|.+.+|.++.++...+.. ...|.|+.|+|++|
T Consensus 230 s~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 230 SVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 5555541 3567888888887 66665555544 44678888888888777655443321 24667777777776
Q ss_pred CCC--CcchHHHHHHhc
Q 006794 584 SEV--SNKSMPALKKLG 598 (631)
Q Consensus 584 ~~l--~~~~~~~l~~~~ 598 (631)
. + .+..+..+....
T Consensus 309 ~-l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 309 R-LGEKDEGIDEIASKF 324 (382)
T ss_pred c-ccccchhHHHHHHhc
Confidence 5 4 344444444443
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.24 E-value=3.3e-13 Score=132.28 Aligned_cols=299 Identities=15% Similarity=0.124 Sum_probs=145.9
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhh
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 227 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 227 (631)
+.++-+++++++ ++...+..-.+.+++++-|.+... .+. .++.-+.++.+|++|.+.+. .+.. ....+ ..
T Consensus 7 pFVrGvDfsgND----Fsg~~FP~~v~qMt~~~WLkLnrt-~L~--~vPeEL~~lqkLEHLs~~HN-~L~~-vhGEL-s~ 76 (1255)
T KOG0444|consen 7 PFVRGVDFSGND----FSGDRFPHDVEQMTQMTWLKLNRT-KLE--QVPEELSRLQKLEHLSMAHN-QLIS-VHGEL-SD 76 (1255)
T ss_pred ceeecccccCCc----CCCCcCchhHHHhhheeEEEechh-hhh--hChHHHHHHhhhhhhhhhhh-hhHh-hhhhh-cc
Confidence 566667777763 222222222235667788877543 222 12222346778888888763 2221 11122 34
Q ss_pred CCCCcEEeecCCCCCCh-hHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhcc
Q 006794 228 CPNLTSLNIESCSKIGN-DGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYG 306 (631)
Q Consensus 228 l~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 306 (631)
+|.|+.+.+..+ ++.. .....+.+ +.-|..|+++.+. +.. +..-.... +++-.|+|++++|...+-+.+. ..
T Consensus 77 Lp~LRsv~~R~N-~LKnsGiP~diF~-l~dLt~lDLShNq-L~E--vP~~LE~A-Kn~iVLNLS~N~IetIPn~lfi-nL 149 (1255)
T KOG0444|consen 77 LPRLRSVIVRDN-NLKNSGIPTDIFR-LKDLTILDLSHNQ-LRE--VPTNLEYA-KNSIVLNLSYNNIETIPNSLFI-NL 149 (1255)
T ss_pred chhhHHHhhhcc-ccccCCCCchhcc-cccceeeecchhh-hhh--cchhhhhh-cCcEEEEcccCccccCCchHHH-hh
Confidence 677888877763 3332 22334444 6677777777643 111 11111111 1266677777777655433332 23
Q ss_pred ccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhc
Q 006794 307 KALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAA 386 (631)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 386 (631)
..|-.|+++++.--. ..+....+..|++|.+++++ +.-..+.++ ..+.+|+.|++++.. -+-..++.-...+
T Consensus 150 tDLLfLDLS~NrLe~-----LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQL-PsmtsL~vLhms~Tq-RTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLEM-----LPPQIRRLSMLQTLKLSNNP-LNHFQLRQL-PSMTSLSVLHMSNTQ-RTLDNIPTSLDDL 221 (1255)
T ss_pred HhHhhhccccchhhh-----cCHHHHHHhhhhhhhcCCCh-hhHHHHhcC-ccchhhhhhhccccc-chhhcCCCchhhh
Confidence 445555666553110 01112345677788888765 333333333 223556666666632 2222223333456
Q ss_pred CCCCeEeccCCCCCch--hhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhh
Q 006794 387 GSLEILQLEECNRVSQ--SGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGK 464 (631)
Q Consensus 387 ~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 464 (631)
.+|..++++.+. ++. ..+.. +++|+.|+++++. ++.+. .......+|++|+++.+. ++. +..-..
T Consensus 222 ~NL~dvDlS~N~-Lp~vPecly~-----l~~LrrLNLS~N~-iteL~---~~~~~W~~lEtLNlSrNQ-Lt~--LP~avc 288 (1255)
T KOG0444|consen 222 HNLRDVDLSENN-LPIVPECLYK-----LRNLRRLNLSGNK-ITELN---MTEGEWENLETLNLSRNQ-LTV--LPDAVC 288 (1255)
T ss_pred hhhhhccccccC-CCcchHHHhh-----hhhhheeccCcCc-eeeee---ccHHHHhhhhhhccccch-hcc--chHHHh
Confidence 677777777643 221 11222 2677777777732 33331 122345666666666653 211 111111
Q ss_pred cCCCCcEEecccccCCCchhh
Q 006794 465 LCPQLQHVDLSGLYGITDVGI 485 (631)
Q Consensus 465 ~~~~L~~L~l~~~~~l~~~~~ 485 (631)
.+++|+.|.+.+ +.++-+|+
T Consensus 289 KL~kL~kLy~n~-NkL~FeGi 308 (1255)
T KOG0444|consen 289 KLTKLTKLYANN-NKLTFEGI 308 (1255)
T ss_pred hhHHHHHHHhcc-CcccccCC
Confidence 235666666654 44544443
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.4e-11 Score=116.16 Aligned_cols=182 Identities=21% Similarity=0.195 Sum_probs=125.9
Q ss_pred eccCCCccchhhHHHhhcccCCCCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCC
Q 006794 126 CLDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLL 205 (631)
Q Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 205 (631)
++.++.++-.++..++.....+..|+.+.|+++ .+.+.+...+.+.|++++.|+++..--..-..+..++..+|+|
T Consensus 99 si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~----~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~L 174 (505)
T KOG3207|consen 99 SISNKQVEFIGFDKIAAKQSNLKKLREISLDNY----RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSL 174 (505)
T ss_pred hhcCceeEEecHHHHHHHhhhHHhhhheeecCc----cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccc
Confidence 344555667778888888888889999999987 5677666678888999999999875333445677888899999
Q ss_pred CEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcch-hhHHHHHhhhhhcc
Q 006794 206 EKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRD-QGISSLLSSASSVL 284 (631)
Q Consensus 206 ~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~L 284 (631)
+.|+++.. .+....-......+++|+.|.++.| +++...+..+...+|+|+.|.+..+..+.. ..-..+. ++|
T Consensus 175 e~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~----~~L 248 (505)
T KOG3207|consen 175 ENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL----QTL 248 (505)
T ss_pred hhcccccc-cccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh----hHH
Confidence 99999873 3332111122235789999999987 466777877888899999999988742221 1112222 338
Q ss_pred cceeccccccchhhHHHHhhccccccccccCCC
Q 006794 285 TRVKLQALNITDFSLAVIGHYGKALTNLVLSDL 317 (631)
Q Consensus 285 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 317 (631)
+.|+|+++.+.+..........|.|+.|+++.+
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhcccc
Confidence 888888877766654444444555555555544
No 20
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=2.2e-09 Score=98.71 Aligned_cols=49 Identities=27% Similarity=0.411 Sum_probs=32.4
Q ss_pred cCcccCeecccCCCCCChHHHHHHH---hcCCcCCEEEecCCcc--ChhhHHhhh
Q 006794 519 HSETLELLNLDGCRKITDASLVAIG---NNCMFLSYLDVSKCAI--TDMGISALS 568 (631)
Q Consensus 519 ~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~~l--~~~~~~~l~ 568 (631)
..|+|+.|.+.+ +.++..+...+. ...|.|++|+|++|.+ .+.++..+.
T Consensus 268 ~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~ 321 (382)
T KOG1909|consen 268 SAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIA 321 (382)
T ss_pred cCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHH
Confidence 357777777777 466655544433 2367788888888887 566666665
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.99 E-value=3.1e-11 Score=124.23 Aligned_cols=104 Identities=24% Similarity=0.267 Sum_probs=59.3
Q ss_pred cceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhhCC
Q 006794 150 LGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCP 229 (631)
Q Consensus 150 l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~ 229 (631)
+..|+++.+- .++.. ++++-+..+ |+.|++++. .+.+.+.. ....++|+.|+++. +.+.. .+.-..++.
T Consensus 23 ~~~ln~~~N~---~l~~p-l~~~~~~v~-L~~l~lsnn-~~~~fp~~--it~l~~L~~ln~s~-n~i~~--vp~s~~~~~ 91 (1081)
T KOG0618|consen 23 LQILNLRRNS---LLSRP-LEFVEKRVK-LKSLDLSNN-QISSFPIQ--ITLLSHLRQLNLSR-NYIRS--VPSSCSNMR 91 (1081)
T ss_pred HHhhhccccc---cccCc-hHHhhheee-eEEeecccc-ccccCCch--hhhHHHHhhcccch-hhHhh--Cchhhhhhh
Confidence 6777777652 22222 555544444 999998874 34433322 12456788888876 33332 222223567
Q ss_pred CCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCC
Q 006794 230 NLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPL 267 (631)
Q Consensus 230 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 267 (631)
+|+.|.|.. +.+. .....+.. +.+|+.|+++++..
T Consensus 92 ~l~~lnL~~-n~l~-~lP~~~~~-lknl~~LdlS~N~f 126 (1081)
T KOG0618|consen 92 NLQYLNLKN-NRLQ-SLPASISE-LKNLQYLDLSFNHF 126 (1081)
T ss_pred cchhheecc-chhh-cCchhHHh-hhcccccccchhcc
Confidence 888888884 3332 22233333 67888888887654
No 22
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.99 E-value=1.9e-10 Score=75.95 Aligned_cols=36 Identities=33% Similarity=0.537 Sum_probs=32.2
Q ss_pred cCCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHHh
Q 006794 49 IDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLT 85 (631)
Q Consensus 49 i~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~ 85 (631)
|..||+||+.+||+||+ .+|+.++++|||+|++++.
T Consensus 1 i~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHC
Confidence 57899999999999999 9999999999999999974
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=7.5e-10 Score=104.66 Aligned_cols=212 Identities=19% Similarity=0.160 Sum_probs=123.0
Q ss_pred ccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhc
Q 006794 332 QGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSN 411 (631)
Q Consensus 332 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 411 (631)
+.+.+|+.+.+.++. +...+.....+.||+++.|+|+++-...-..+..+++.+|+|+.|+++.+.
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr------------- 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR------------- 183 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-------------
Confidence 345566666666554 444443344455566666666664222223445555556666666665432
Q ss_pred ccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhh
Q 006794 412 SASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLES 491 (631)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 491 (631)
....... .....+++|+.|.+++|. ++...+..+...||+|+.|++..++.+....... .
T Consensus 184 --------------l~~~~~s--~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~---~ 243 (505)
T KOG3207|consen 184 --------------LSNFISS--NTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATST---K 243 (505)
T ss_pred --------------ccCCccc--cchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchh---h
Confidence 1111100 001246778888888885 7788888888889999999998854332211111 1
Q ss_pred cccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHH-----HHHhcCCcCCEEEecCCccCh-hhHH
Q 006794 492 CKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLV-----AIGNNCMFLSYLDVSKCAITD-MGIS 565 (631)
Q Consensus 492 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~-----~l~~~~~~L~~L~L~~~~l~~-~~~~ 565 (631)
.+..|+.|+|++.+.+......... .++.|+.|.++.| .+.+.... .....+++|+.|++..|++.+ ..+.
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~--~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~ 320 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVG--TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN 320 (505)
T ss_pred hhhHHhhccccCCcccccccccccc--cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccc
Confidence 1127889999885444433333333 5888888888884 66543322 223457889999999988754 2344
Q ss_pred hhhhccCCCccEEeccC
Q 006794 566 ALSHAEQLNLQVLSLSS 582 (631)
Q Consensus 566 ~l~~~~~~~L~~L~l~~ 582 (631)
.+. .+++|+.|.+..
T Consensus 321 ~l~--~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 321 HLR--TLENLKHLRITL 335 (505)
T ss_pred hhh--ccchhhhhhccc
Confidence 444 566777776554
No 24
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.71 E-value=4.2e-10 Score=105.07 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=28.3
Q ss_pred cCCCccEEeccCCCCCCcchHHHHHHhcCccccccccccc
Q 006794 571 EQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCN 610 (631)
Q Consensus 571 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~ 610 (631)
.+.+|..|++.++. + ..++.+.+.+.+|+.|+++|.|
T Consensus 503 nm~nL~tLDL~nNd-l--q~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 503 NMRNLTTLDLQNND-L--QQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhcceeccCCCc-h--hhCChhhccccceeEEEecCCc
Confidence 45588888988854 5 5677777888889999999843
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.70 E-value=5.8e-09 Score=97.45 Aligned_cols=96 Identities=24% Similarity=0.132 Sum_probs=66.7
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 574 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~ 574 (631)
+|++|++++ +.++...-.++.. +.++++|.|.. +++....-. +..++..|+.|+|.+|+|+......+. ...+
T Consensus 275 ~L~~lnlsn-N~i~~i~~~aFe~--~a~l~eL~L~~-N~l~~v~~~-~f~~ls~L~tL~L~~N~it~~~~~aF~--~~~~ 347 (498)
T KOG4237|consen 275 NLRKLNLSN-NKITRIEDGAFEG--AAELQELYLTR-NKLEFVSSG-MFQGLSGLKTLSLYDNQITTVAPGAFQ--TLFS 347 (498)
T ss_pred cceEeccCC-Cccchhhhhhhcc--hhhhhhhhcCc-chHHHHHHH-hhhccccceeeeecCCeeEEEeccccc--ccce
Confidence 888888888 5676665555443 77888888877 677654433 335588889999999887765444444 5668
Q ss_pred ccEEeccCCCCCCcchHHHHHHh
Q 006794 575 LQVLSLSSCSEVSNKSMPALKKL 597 (631)
Q Consensus 575 L~~L~l~~c~~l~~~~~~~l~~~ 597 (631)
|.+|++-.++.--+..+.++...
T Consensus 348 l~~l~l~~Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 348 LSTLNLLSNPFNCNCRLAWLGEW 370 (498)
T ss_pred eeeeehccCcccCccchHHHHHH
Confidence 88888888776666666665544
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.67 E-value=8.5e-08 Score=101.99 Aligned_cols=265 Identities=18% Similarity=0.161 Sum_probs=129.0
Q ss_pred CCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccC
Q 006794 255 RNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGL 334 (631)
Q Consensus 255 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 334 (631)
..-..|+++++. +.. +....+..++.|.+..+.++.. +...++|+.|+++++. ++... ...
T Consensus 201 ~~~~~LdLs~~~-Lts-----LP~~l~~~L~~L~L~~N~Lt~L-----P~lp~~Lk~LdLs~N~-LtsLP-------~lp 261 (788)
T PRK15387 201 NGNAVLNVGESG-LTT-----LPDCLPAHITTLVIPDNNLTSL-----PALPPELRTLEVSGNQ-LTSLP-------VLP 261 (788)
T ss_pred CCCcEEEcCCCC-CCc-----CCcchhcCCCEEEccCCcCCCC-----CCCCCCCcEEEecCCc-cCccc-------Ccc
Confidence 456677777653 221 1111222377787777766642 2235677777776652 22110 112
Q ss_pred CCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccC
Q 006794 335 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 414 (631)
Q Consensus 335 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 414 (631)
++|+.|++.++. +.. +.. ..++|+.|++.++ .+.. +. ...++|+.|+++++. +.... ....
T Consensus 262 ~sL~~L~Ls~N~-L~~--Lp~---lp~~L~~L~Ls~N-~Lt~--LP---~~p~~L~~LdLS~N~-L~~Lp------~lp~ 322 (788)
T PRK15387 262 PGLLELSIFSNP-LTH--LPA---LPSGLCKLWIFGN-QLTS--LP---VLPPGLQELSVSDNQ-LASLP------ALPS 322 (788)
T ss_pred cccceeeccCCc-hhh--hhh---chhhcCEEECcCC-cccc--cc---ccccccceeECCCCc-cccCC------CCcc
Confidence 566777766653 321 111 2256677777664 2321 11 123567777776643 22211 0114
Q ss_pred CCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhccc
Q 006794 415 KLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKA 494 (631)
Q Consensus 415 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 494 (631)
.|+.|.+++|. +..++. ...+|+.|++++|. +.. +....++|+.|++++ +.++. +.. .+.
T Consensus 323 ~L~~L~Ls~N~-L~~LP~------lp~~Lq~LdLS~N~-Ls~-----LP~lp~~L~~L~Ls~-N~L~~--LP~----l~~ 382 (788)
T PRK15387 323 ELCKLWAYNNQ-LTSLPT------LPSGLQELSVSDNQ-LAS-----LPTLPSELYKLWAYN-NRLTS--LPA----LPS 382 (788)
T ss_pred cccccccccCc-cccccc------cccccceEecCCCc-cCC-----CCCCCcccceehhhc-ccccc--Ccc----ccc
Confidence 56666666543 222210 12467777776654 221 111124566666665 33331 111 112
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 574 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~ 574 (631)
+|+.|+++++ .++... . ..++|+.|++++ +.++.. .....+|+.|++++|.++.. ...+. .+++
T Consensus 383 ~L~~LdLs~N-~Lt~LP-----~-l~s~L~~LdLS~-N~LssI-----P~l~~~L~~L~Ls~NqLt~L-P~sl~--~L~~ 446 (788)
T PRK15387 383 GLKELIVSGN-RLTSLP-----V-LPSELKELMVSG-NRLTSL-----PMLPSGLLSLSVYRNQLTRL-PESLI--HLSS 446 (788)
T ss_pred ccceEEecCC-cccCCC-----C-cccCCCEEEccC-CcCCCC-----CcchhhhhhhhhccCccccc-ChHHh--hccC
Confidence 6777777663 443211 1 134667777776 455421 11134566677777766532 12222 4557
Q ss_pred ccEEeccCCCCCCcchHHHH
Q 006794 575 LQVLSLSSCSEVSNKSMPAL 594 (631)
Q Consensus 575 L~~L~l~~c~~l~~~~~~~l 594 (631)
|+.|++++|+ ++...+..+
T Consensus 447 L~~LdLs~N~-Ls~~~~~~L 465 (788)
T PRK15387 447 ETTVNLEGNP-LSERTLQAL 465 (788)
T ss_pred CCeEECCCCC-CCchHHHHH
Confidence 7777777754 665544443
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.64 E-value=3.4e-08 Score=104.98 Aligned_cols=265 Identities=16% Similarity=0.132 Sum_probs=166.1
Q ss_pred CCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhcccc
Q 006794 229 PNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKA 308 (631)
Q Consensus 229 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 308 (631)
.+-..|+++.+ .++. ....+. ++|+.|.+.++. ++.. .. .+++|+.|++.++.++..+ ...++
T Consensus 201 ~~~~~LdLs~~-~Lts-LP~~l~---~~L~~L~L~~N~-Lt~L-----P~-lp~~Lk~LdLs~N~LtsLP-----~lp~s 263 (788)
T PRK15387 201 NGNAVLNVGES-GLTT-LPDCLP---AHITTLVIPDNN-LTSL-----PA-LPPELRTLEVSGNQLTSLP-----VLPPG 263 (788)
T ss_pred CCCcEEEcCCC-CCCc-CCcchh---cCCCEEEccCCc-CCCC-----CC-CCCCCcEEEecCCccCccc-----Ccccc
Confidence 56778998874 4442 112232 479999998754 3321 11 2344999999998887542 24578
Q ss_pred ccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCC
Q 006794 309 LTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGS 388 (631)
Q Consensus 309 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 388 (631)
|+.|++.++. +.. +.. ...+|+.|++.++. +... ....++|+.|+++++ .+.. +.. ...+
T Consensus 264 L~~L~Ls~N~-L~~-----Lp~--lp~~L~~L~Ls~N~-Lt~L-----P~~p~~L~~LdLS~N-~L~~--Lp~---lp~~ 323 (788)
T PRK15387 264 LLELSIFSNP-LTH-----LPA--LPSGLCKLWIFGNQ-LTSL-----PVLPPGLQELSVSDN-QLAS--LPA---LPSE 323 (788)
T ss_pred cceeeccCCc-hhh-----hhh--chhhcCEEECcCCc-cccc-----cccccccceeECCCC-cccc--CCC---Cccc
Confidence 9999988763 221 111 23578899998875 4432 123478999999986 4432 111 1356
Q ss_pred CCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCC
Q 006794 389 LEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQ 468 (631)
Q Consensus 389 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 468 (631)
|+.|.+++|. ++..+ ...++|+.|++++| .+..++. ..++|+.|++++|. +.. +....++
T Consensus 324 L~~L~Ls~N~-L~~LP------~lp~~Lq~LdLS~N-~Ls~LP~------lp~~L~~L~Ls~N~-L~~-----LP~l~~~ 383 (788)
T PRK15387 324 LCKLWAYNNQ-LTSLP------TLPSGLQELSVSDN-QLASLPT------LPSELYKLWAYNNR-LTS-----LPALPSG 383 (788)
T ss_pred ccccccccCc-ccccc------ccccccceEecCCC-ccCCCCC------CCcccceehhhccc-ccc-----Ccccccc
Confidence 8888888754 33211 11258999999985 3444321 24678889888865 332 1122368
Q ss_pred CcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCc
Q 006794 469 LQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMF 548 (631)
Q Consensus 469 L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 548 (631)
|+.|++++ +.++. +.. .+++|+.|+++++ .++... . ...+|+.|++++ ++++... ..+. .+++
T Consensus 384 L~~LdLs~-N~Lt~--LP~----l~s~L~~LdLS~N-~LssIP--~----l~~~L~~L~Ls~-NqLt~LP-~sl~-~L~~ 446 (788)
T PRK15387 384 LKELIVSG-NRLTS--LPV----LPSELKELMVSGN-RLTSLP--M----LPSGLLSLSVYR-NQLTRLP-ESLI-HLSS 446 (788)
T ss_pred cceEEecC-CcccC--CCC----cccCCCEEEccCC-cCCCCC--c----chhhhhhhhhcc-CcccccC-hHHh-hccC
Confidence 99999998 45542 111 1238999999994 555321 1 135788999988 6777432 2333 4899
Q ss_pred CCEEEecCCccChhhHHhh
Q 006794 549 LSYLDVSKCAITDMGISAL 567 (631)
Q Consensus 549 L~~L~L~~~~l~~~~~~~l 567 (631)
|+.|+|++|++++..+..+
T Consensus 447 L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 447 ETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCeEECCCCCCCchHHHHH
Confidence 9999999999998766655
No 28
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.58 E-value=1e-08 Score=68.26 Aligned_cols=38 Identities=37% Similarity=0.500 Sum_probs=32.5
Q ss_pred CcCCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHHhh
Q 006794 48 SIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTS 86 (631)
Q Consensus 48 ~i~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 86 (631)
+|.+||+|++.+||+||+ ..|+.++++|||+|++++..
T Consensus 2 ~~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTT
T ss_pred CHHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcC
Confidence 477899999999999999 99999999999999999854
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.55 E-value=2.4e-07 Score=98.19 Aligned_cols=154 Identities=20% Similarity=0.267 Sum_probs=72.2
Q ss_pred CceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcc
Q 006794 443 LRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSET 522 (631)
Q Consensus 443 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~ 522 (631)
|++|+|++...+...-...++..+|+|++|.+.+ ..+..+.+..+..++| +|..|++|++ ++++. ..+. ++++
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFp-NL~sLDIS~T-nI~nl--~GIS--~Lkn 196 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFP-NLRSLDISGT-NISNL--SGIS--RLKN 196 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccC-ccceeecCCC-CccCc--HHHh--cccc
Confidence 3333333333333333445555556666666655 3444444555555554 6666666654 33322 1111 3556
Q ss_pred cCeecccCCCCCC-hHHHHHHHhcCCcCCEEEecCCccChhh--HHhhh--hccCCCccEEeccCCCCCCcchHHHHHHh
Q 006794 523 LELLNLDGCRKIT-DASLVAIGNNCMFLSYLDVSKCAITDMG--ISALS--HAEQLNLQVLSLSSCSEVSNKSMPALKKL 597 (631)
Q Consensus 523 L~~L~l~~c~~l~-~~~~~~l~~~~~~L~~L~L~~~~l~~~~--~~~l~--~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 597 (631)
|+.|.+.+- .+. ...+..+.. +++|+.||+|.....+.. +.... ...+|.|+.|+.++ ..+++..++.+...
T Consensus 197 Lq~L~mrnL-e~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~s 273 (699)
T KOG3665|consen 197 LQVLSMRNL-EFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNS 273 (699)
T ss_pred HHHHhccCC-CCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHh
Confidence 666655552 222 233444443 566666666655322211 11111 12455666666665 44555555555444
Q ss_pred cCccccccc
Q 006794 598 GKTLVGLNL 606 (631)
Q Consensus 598 ~~~L~~L~l 606 (631)
-|+|+.+-+
T Consensus 274 H~~L~~i~~ 282 (699)
T KOG3665|consen 274 HPNLQQIAA 282 (699)
T ss_pred CccHhhhhh
Confidence 444554443
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.54 E-value=2.6e-07 Score=97.87 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=36.3
Q ss_pred CCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCC
Q 006794 335 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECN 398 (631)
Q Consensus 335 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 398 (631)
.+|++|++++...+.......+...+|+|++|.+.+- .+....+..+..++|+|..|+|++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~Tn 184 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTN 184 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCC
Confidence 4566666666554444444555555666666666663 33333455556666666666666643
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.44 E-value=8.8e-07 Score=94.97 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=25.4
Q ss_pred ccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCC
Q 006794 307 KALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKC 371 (631)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 371 (631)
++++.|+++++. ++.... ...++|+.|+++++. +..... .+ .++|+.|++++|
T Consensus 199 ~~L~~L~Ls~N~-LtsLP~------~l~~nL~~L~Ls~N~-LtsLP~-~l---~~~L~~L~Ls~N 251 (754)
T PRK15370 199 EQITTLILDNNE-LKSLPE------NLQGNIKTLYANSNQ-LTSIPA-TL---PDTIQEMELSIN 251 (754)
T ss_pred cCCcEEEecCCC-CCcCCh------hhccCCCEEECCCCc-cccCCh-hh---hccccEEECcCC
Confidence 467777776653 221110 012466777776653 332111 11 145666666664
No 32
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.43 E-value=1.4e-07 Score=60.36 Aligned_cols=34 Identities=41% Similarity=0.642 Sum_probs=31.9
Q ss_pred CCHHHHHHHhccCCCcccchhhhhhhHHHHHHHhh
Q 006794 52 LPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTS 86 (631)
Q Consensus 52 LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 86 (631)
||+|++.+||.||+ ..|+.++++|||+|+.++..
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999 99999999999999998743
No 33
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=5.2e-07 Score=76.96 Aligned_cols=106 Identities=26% Similarity=0.390 Sum_probs=53.6
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 574 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~ 574 (631)
.++.++-+++ .+..+++..+.. +++++.|.+.+|..+.|.+++.+....+ +
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~~~~--------------------------~ 152 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLRD--LRSIKSLSLANCKYFDDWCLERLGGLAP--------------------------S 152 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHhc--cchhhhheeccccchhhHHHHHhccccc--------------------------c
Confidence 3455555553 444455554443 5555555555555555555555544444 5
Q ss_pred ccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCH--HHHHHHHhhccccccC
Q 006794 575 LQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINS--STVARLVESLWRCDIL 630 (631)
Q Consensus 575 L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~--~~~~~l~~~l~~~~~~ 630 (631)
|+.|+|++|+.||+.++..+..+. +|+.|.+++=+.+.. .....+.+++|+|+|+
T Consensus 153 L~~L~lsgC~rIT~~GL~~L~~lk-nLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 153 LQDLDLSGCPRITDGGLACLLKLK-NLRRLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred hheeeccCCCeechhHHHHHHHhh-hhHHHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 555555555555555554433332 355555554333332 2234466677777775
No 34
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=1.6e-06 Score=78.45 Aligned_cols=137 Identities=17% Similarity=0.103 Sum_probs=57.9
Q ss_pred CCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEeccccc----CCCchhhHHHHhhcccCccEEecCCCCCCchHHHHH
Q 006794 439 PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLY----GITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLA 514 (631)
Q Consensus 439 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~----~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~ 514 (631)
+..+|+.|.+.+. .++......+...+|.++.|+++.++ ++.++..... .+.+++|.+.+|....-.....
T Consensus 119 p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~----s~~v~tlh~~~c~~~~w~~~~~ 193 (418)
T KOG2982|consen 119 PLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW----STEVLTLHQLPCLEQLWLNKNK 193 (418)
T ss_pred cccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccchhhhhcccccccccc----chhhhhhhcCCcHHHHHHHHHh
Confidence 3445555555543 34555555555555666666555421 1122222111 1134444444443322222333
Q ss_pred HHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh-hhHHhhhhccCCCccEEeccCCC
Q 006794 515 LARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD-MGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 515 l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
+.. .+|++..+.+..|+ +.+...+.-....|.+..|+|+.++|.+ +.+..+. ++++|.-|.++..|
T Consensus 194 l~r-~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln--~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 194 LSR-IFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALN--GFPQLVDLRVSENP 260 (418)
T ss_pred HHh-hcccchheeeecCc-ccchhhcccCCCCCcchhhhhcccccccHHHHHHHc--CCchhheeeccCCc
Confidence 333 34555555555442 2222222222334444445555544433 2333333 44455555544444
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.24 E-value=1e-06 Score=76.17 Aligned_cols=107 Identities=26% Similarity=0.224 Sum_probs=45.8
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh-hhHHhhhhccCC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD-MGISALSHAEQL 573 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~~ 573 (631)
+|+.|+++++ .++.. ..+. .+++|+.|++++ |.+++.+ ..+...+|+|++|++++|.|.+ ..+..+. .++
T Consensus 43 ~L~~L~Ls~N-~I~~l--~~l~--~L~~L~~L~L~~-N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~--~l~ 113 (175)
T PF14580_consen 43 KLEVLDLSNN-QITKL--EGLP--GLPRLKTLDLSN-NRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLS--SLP 113 (175)
T ss_dssp T--EEE-TTS---S----TT------TT--EEE--S-S---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGG--G-T
T ss_pred CCCEEECCCC-CCccc--cCcc--ChhhhhhcccCC-CCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHH--cCC
Confidence 5666666653 33321 1122 367888888888 7877643 1233458889999998888766 2344555 788
Q ss_pred CccEEeccCCCCCCcch--HHHHHHhcCcccccccccccC
Q 006794 574 NLQVLSLSSCSEVSNKS--MPALKKLGKTLVGLNLQNCNS 611 (631)
Q Consensus 574 ~L~~L~l~~c~~l~~~~--~~~l~~~~~~L~~L~l~~c~~ 611 (631)
+|+.|++.++| +++.. -..+...+|+|+.||=.....
T Consensus 114 ~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 114 KLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp T--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred CcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 89999998887 44332 234666778888887766433
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.19 E-value=4.8e-06 Score=89.38 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=81.1
Q ss_pred CCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcC
Q 006794 387 GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLC 466 (631)
Q Consensus 387 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 466 (631)
++|+.|++++|. ++.... ...++|+.|++++|. +..++. ...++|+.|++++|. ++... .. .+
T Consensus 283 ~sL~~L~Ls~N~-Lt~LP~-----~lp~sL~~L~Ls~N~-Lt~LP~-----~l~~sL~~L~Ls~N~-Lt~LP-~~---l~ 345 (754)
T PRK15370 283 EELRYLSVYDNS-IRTLPA-----HLPSGITHLNVQSNS-LTALPE-----TLPPGLKTLEAGENA-LTSLP-AS---LP 345 (754)
T ss_pred CCCcEEECCCCc-cccCcc-----cchhhHHHHHhcCCc-cccCCc-----cccccceeccccCCc-cccCC-hh---hc
Confidence 456666666643 221110 011356666666643 222211 123577777777764 22111 11 13
Q ss_pred CCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChH--HHHHHHh
Q 006794 467 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDA--SLVAIGN 544 (631)
Q Consensus 467 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~--~~~~l~~ 544 (631)
++|+.|+++++ .++. +. ...+++|+.|++++| .++.... .+ ..+|+.|++++ ++++.. .+..+..
T Consensus 346 ~sL~~L~Ls~N-~L~~--LP---~~lp~~L~~LdLs~N-~Lt~LP~-~l----~~sL~~LdLs~-N~L~~LP~sl~~~~~ 412 (754)
T PRK15370 346 PELQVLDVSKN-QITV--LP---ETLPPTITTLDVSRN-ALTNLPE-NL----PAALQIMQASR-NNLVRLPESLPHFRG 412 (754)
T ss_pred CcccEEECCCC-CCCc--CC---hhhcCCcCEEECCCC-cCCCCCH-hH----HHHHHHHhhcc-CCcccCchhHHHHhh
Confidence 67888888874 3431 11 111237888888885 4443211 11 13678888888 466532 3344445
Q ss_pred cCCcCCEEEecCCccChhhHHhh
Q 006794 545 NCMFLSYLDVSKCAITDMGISAL 567 (631)
Q Consensus 545 ~~~~L~~L~L~~~~l~~~~~~~l 567 (631)
.++++..|++.+|.++...+..+
T Consensus 413 ~~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 413 EGPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred cCCCccEEEeeCCCccHHHHHHH
Confidence 56888889998888876655544
No 37
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=3.6e-05 Score=68.95 Aligned_cols=115 Identities=18% Similarity=0.074 Sum_probs=58.0
Q ss_pred CCCCCceEeccCCCCCC--HHHHHHHhhcCCCCcEEecccccCCCchhhHHHHh----hcccCccEEecCCCCCCchHHH
Q 006794 439 PNCSLRSLSIRNCPGFG--NASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLE----SCKAGLVKVNLSGCLNLTDEVV 512 (631)
Q Consensus 439 ~~~~L~~L~l~~~~~~~--~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~~L~~L~l~~c~~l~~~~~ 512 (631)
.-|.|+.+....++..+ ..-.....+.-.+|+.+.+.. +.+..+|+..++- .|. +|+.|+|.. +.++-.+.
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~-~LevLDlqD-Ntft~~gS 231 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSH-SLEVLDLQD-NTFTLEGS 231 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhC-cceeeeccc-cchhhhhH
Confidence 45666666666554322 222222333335677777766 5666665554432 233 666666655 34444444
Q ss_pred HHHHhh--cCcccCeecccCCCCCChHHHHHHHh-----cCCcCCEEEecCC
Q 006794 513 LALARL--HSETLELLNLDGCRKITDASLVAIGN-----NCMFLSYLDVSKC 557 (631)
Q Consensus 513 ~~l~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~-----~~~~L~~L~L~~~ 557 (631)
..++.. ..+.|+.|.+..| -++..+...+.. ..|+|..|...+|
T Consensus 232 ~~La~al~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHHHHHhcccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchh
Confidence 433331 2355666666665 454444444432 2455666665555
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.12 E-value=1.3e-06 Score=75.53 Aligned_cols=132 Identities=22% Similarity=0.241 Sum_probs=48.7
Q ss_pred CCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCC-chhhHHHHhhcccCccEEecCCCCCCchHHHHHHH
Q 006794 438 SPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGIT-DVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALA 516 (631)
Q Consensus 438 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 516 (631)
.++.++++|++.++. ++. +..+...+.+|+.|+++++ .++ -+++.. .+ .|+.|++++ +.++...- .+.
T Consensus 16 ~n~~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~l~~l~~----L~-~L~~L~L~~-N~I~~i~~-~l~ 84 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQ-IST--IENLGATLDKLEVLDLSNN-QITKLEGLPG----LP-RLKTLDLSN-NRISSISE-GLD 84 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS---S--TT--------T-T--EEE--S-S---S-CH-HHH
T ss_pred ccccccccccccccc-ccc--ccchhhhhcCCCEEECCCC-CCccccCccC----hh-hhhhcccCC-CCCCcccc-chH
Confidence 345566777777764 221 2334434577888888873 433 233332 22 889999987 56665422 122
Q ss_pred hhcCcccCeecccCCCCCChHH-HHHHHhcCCcCCEEEecCCccChhh-HHhhhhccCCCccEEeccCC
Q 006794 517 RLHSETLELLNLDGCRKITDAS-LVAIGNNCMFLSYLDVSKCAITDMG-ISALSHAEQLNLQVLSLSSC 583 (631)
Q Consensus 517 ~~~~~~L~~L~l~~c~~l~~~~-~~~l~~~~~~L~~L~L~~~~l~~~~-~~~l~~~~~~~L~~L~l~~c 583 (631)
. .+|+|++|.+++ +++.+.. +..+ ..+++|+.|+|.+|++++.. .....-..+|+|+.|+-...
T Consensus 85 ~-~lp~L~~L~L~~-N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 85 K-NLPNLQELYLSN-NKISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp H-H-TT--EEE-TT-S---SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred H-hCCcCCEEECcC-CcCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 2 478999999998 7876532 3333 45999999999999987642 22222258999999987663
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=6e-06 Score=74.78 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=24.0
Q ss_pred CCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccc
Q 006794 441 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGL 477 (631)
Q Consensus 441 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 477 (631)
+.+++|+...|...-......+.+.+|++..+.+..|
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence 3556666666654445555666777788887777664
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.98 E-value=2.5e-06 Score=77.22 Aligned_cols=127 Identities=22% Similarity=0.232 Sum_probs=62.3
Q ss_pred CCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCc-hhhHHHHhhcccCccEEecCCCCCCchHHHHHHHh
Q 006794 439 PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITD-VGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALAR 517 (631)
Q Consensus 439 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 517 (631)
.+..|++++++++. ++ .+..-.+..|.++.|+++. +.+.. +.+..+ + +|..|++++ +.++...- +..
T Consensus 282 TWq~LtelDLS~N~-I~--~iDESvKL~Pkir~L~lS~-N~i~~v~nLa~L----~-~L~~LDLS~-N~Ls~~~G--wh~ 349 (490)
T KOG1259|consen 282 TWQELTELDLSGNL-IT--QIDESVKLAPKLRRLILSQ-NRIRTVQNLAEL----P-QLQLLDLSG-NLLAECVG--WHL 349 (490)
T ss_pred hHhhhhhccccccc-hh--hhhhhhhhccceeEEeccc-cceeeehhhhhc----c-cceEeeccc-chhHhhhh--hHh
Confidence 34556666666653 21 1112223346777777766 33332 222222 2 666777766 23332111 111
Q ss_pred hcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChh-hHHhhhhccCCCccEEeccCCC
Q 006794 518 LHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDM-GISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 518 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
.+-+++.|.+++ |.+.+. .-+ ..+-+|..|++++|+|... .+..+. ++|.|+.+.+.++|
T Consensus 350 -KLGNIKtL~La~-N~iE~L--SGL-~KLYSLvnLDl~~N~Ie~ldeV~~IG--~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 350 -KLGNIKTLKLAQ-NKIETL--SGL-RKLYSLVNLDLSSNQIEELDEVNHIG--NLPCLETLRLTGNP 410 (490)
T ss_pred -hhcCEeeeehhh-hhHhhh--hhh-HhhhhheeccccccchhhHHHhcccc--cccHHHHHhhcCCC
Confidence 345666666666 444321 111 1244566677777766542 233333 66677777777765
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=1e-05 Score=69.20 Aligned_cols=86 Identities=24% Similarity=0.357 Sum_probs=71.9
Q ss_pred CCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCC
Q 006794 468 QLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCM 547 (631)
Q Consensus 468 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 547 (631)
.++.++-++ ..+..+|+..+-. ++ .++.|.+.+|..+.|.++..+.. ..++|+.|+|++|+.||+.++..+.. ++
T Consensus 102 ~IeaVDAsd-s~I~~eGle~L~~-l~-~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL~~L~~-lk 176 (221)
T KOG3864|consen 102 KIEAVDASD-SSIMYEGLEHLRD-LR-SIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGLACLLK-LK 176 (221)
T ss_pred eEEEEecCC-chHHHHHHHHHhc-cc-hhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHHHHHHH-hh
Confidence 356677766 5666777766533 33 89999999999999999999998 88999999999999999999988876 89
Q ss_pred cCCEEEecCCc
Q 006794 548 FLSYLDVSKCA 558 (631)
Q Consensus 548 ~L~~L~L~~~~ 558 (631)
+|+.|.|.+-.
T Consensus 177 nLr~L~l~~l~ 187 (221)
T KOG3864|consen 177 NLRRLHLYDLP 187 (221)
T ss_pred hhHHHHhcCch
Confidence 99999987764
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.91 E-value=1.9e-06 Score=81.10 Aligned_cols=291 Identities=19% Similarity=0.145 Sum_probs=169.3
Q ss_pred cccccccccCCCC--CCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHH
Q 006794 306 GKALTNLVLSDLP--NVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFS 383 (631)
Q Consensus 306 ~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~ 383 (631)
.+..+.++|..+. .+.+..| +.+++|+.|+|+++. +......++ +.+++|.+|.+.+.+.+++.. ...+
T Consensus 66 P~~tveirLdqN~I~~iP~~aF------~~l~~LRrLdLS~N~-Is~I~p~AF-~GL~~l~~Lvlyg~NkI~~l~-k~~F 136 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAF------KTLHRLRRLDLSKNN-ISFIAPDAF-KGLASLLSLVLYGNNKITDLP-KGAF 136 (498)
T ss_pred CCcceEEEeccCCcccCChhhc------cchhhhceecccccc-hhhcChHhh-hhhHhhhHHHhhcCCchhhhh-hhHh
Confidence 3566667666553 2343333 456889999999875 544433333 455788888888866676532 2233
Q ss_pred HhcCCCCeEeccC--CCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHH
Q 006794 384 KAAGSLEILQLEE--CNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAM 461 (631)
Q Consensus 384 ~~~~~L~~L~l~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 461 (631)
..+.+|+.|.+.. |..+....+..+ ++|..|.+.++. +..+. .-.+.....++.+++..++.+.+..+.+
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL-----~~l~lLslyDn~-~q~i~--~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDL-----PSLSLLSLYDNK-IQSIC--KGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHh-----hhcchhcccchh-hhhhc--cccccchhccchHhhhcCccccccccch
Confidence 4566677776654 333444444444 777777777632 22211 1123467788888888887666655554
Q ss_pred HhhcCC----------CCcEEeccc--ccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeeccc
Q 006794 462 LGKLCP----------QLQHVDLSG--LYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLD 529 (631)
Q Consensus 462 l~~~~~----------~L~~L~l~~--~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~ 529 (631)
++.... ...-..+.+ ...+....+....+ .+..--.+.|.-........ .. .+++|+.|+++
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e----sl~s~~~~~d~~d~~cP~~c-f~-~L~~L~~lnls 282 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE----SLPSRLSSEDFPDSICPAKC-FK-KLPNLRKLNLS 282 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH----hHHHhhccccCcCCcChHHH-Hh-hcccceEeccC
Confidence 443210 001111111 00111111111100 11111112332222222222 23 68999999999
Q ss_pred CCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCcccccccccc
Q 006794 530 GCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNC 609 (631)
Q Consensus 530 ~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c 609 (631)
+ ++++...-..+. ....+++|.|..|++....-..+ .++..|+.|++.+ ++||......+.... +|.+|++-..
T Consensus 283 n-N~i~~i~~~aFe-~~a~l~eL~L~~N~l~~v~~~~f--~~ls~L~tL~L~~-N~it~~~~~aF~~~~-~l~~l~l~~N 356 (498)
T KOG4237|consen 283 N-NKITRIEDGAFE-GAAELQELYLTRNKLEFVSSGMF--QGLSGLKTLSLYD-NQITTVAPGAFQTLF-SLSTLNLLSN 356 (498)
T ss_pred C-Cccchhhhhhhc-chhhhhhhhcCcchHHHHHHHhh--hccccceeeeecC-CeeEEEecccccccc-eeeeeehccC
Confidence 9 799876655554 48899999999998654322222 3667999999999 458776666655544 5999999887
Q ss_pred cCCCHHHHHHHHhhcc
Q 006794 610 NSINSSTVARLVESLW 625 (631)
Q Consensus 610 ~~l~~~~~~~l~~~l~ 625 (631)
|-..+-.++++.+|+.
T Consensus 357 p~~CnC~l~wl~~Wlr 372 (498)
T KOG4237|consen 357 PFNCNCRLAWLGEWLR 372 (498)
T ss_pred cccCccchHHHHHHHh
Confidence 8888888999998874
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.86 E-value=0.00023 Score=63.91 Aligned_cols=217 Identities=18% Similarity=0.225 Sum_probs=119.1
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCC-C----Chh---h---HHHHHHhCCCCCEeeccCCCCC
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPS-V----GDE---G---LLEIAKECHLLEKLELCHCPSI 216 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~----~~~---~---~~~~~~~~~~L~~L~L~~~~~~ 216 (631)
..+..++++++ .+.......+.....+.+.|.+.+... + .+. . +...+-.||+|+..+|+.. .+
T Consensus 30 d~~~evdLSGN----tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Af 104 (388)
T COG5238 30 DELVEVDLSGN----TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AF 104 (388)
T ss_pred cceeEEeccCC----cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-cc
Confidence 57888999998 577777777766655555555433111 1 111 1 1222347899999999873 34
Q ss_pred Ch---HHHHHHHhhCCCCcEEeecCCCCCChhH-------HHHH-----hhcCCCCcEEEccCCCCcc--hhhHHHHHhh
Q 006794 217 SN---ESLIAIAENCPNLTSLNIESCSKIGNDG-------LQAI-----GKFCRNLQCLSIKDCPLVR--DQGISSLLSS 279 (631)
Q Consensus 217 ~~---~~l~~l~~~l~~L~~L~l~~~~~~~~~~-------~~~l-----~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~ 279 (631)
.. ..+..+..+...|.+|.+++| ++...+ +..+ +..-|.|+.+....+.... ..-+....+.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 32 234455566788999999975 333221 1111 1125788888776554221 1222333333
Q ss_pred hhhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHH---HHHH
Q 006794 280 ASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVS---LEAM 356 (631)
Q Consensus 280 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~l 356 (631)
. ..++.+++..+.+...++..+... .+..+.+|+.|++..+. ++-.+ +...
T Consensus 184 h-~~lk~vki~qNgIrpegv~~L~~~------------------------gl~y~~~LevLDlqDNt-ft~~gS~~La~a 237 (388)
T COG5238 184 H-ENLKEVKIQQNGIRPEGVTMLAFL------------------------GLFYSHSLEVLDLQDNT-FTLEGSRYLADA 237 (388)
T ss_pred h-cCceeEEeeecCcCcchhHHHHHH------------------------HHHHhCcceeeeccccc-hhhhhHHHHHHH
Confidence 2 238888888888877665544321 11223555555555543 33222 2222
Q ss_pred hhcCCCcCeEEcCCCCCCCHHHHHHHHHh-----cCCCCeEeccCC
Q 006794 357 GKGCLNLKQMCLRKCCFVSDNGLVAFSKA-----AGSLEILQLEEC 397 (631)
Q Consensus 357 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~-----~~~L~~L~l~~~ 397 (631)
...++.|++|.+..| -++..+...++.. .|+|..|....+
T Consensus 238 l~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 238 LCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hcccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchh
Confidence 334567788888776 3444444444433 366666665543
No 44
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.81 E-value=1.2e-05 Score=75.98 Aligned_cols=62 Identities=24% Similarity=0.147 Sum_probs=32.5
Q ss_pred HHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCC
Q 006794 171 AIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESC 239 (631)
Q Consensus 171 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~ 239 (631)
...+..+++..|++.+. .+....-..+ .+++|++||+++ +.++. ++.-.+++ +|+.|.+.|+
T Consensus 246 e~~~~L~~l~vLDLRdN-klke~Pde~c--lLrsL~rLDlSN-N~is~--Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDN-KLKEVPDEIC--LLRSLERLDLSN-NDISS--LPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred HHhcccccceeeecccc-ccccCchHHH--HhhhhhhhcccC-Ccccc--CCcccccc-eeeehhhcCC
Confidence 33445667777777654 3433222221 456777777777 34442 33323334 5666666664
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.61 E-value=1.5e-05 Score=72.38 Aligned_cols=126 Identities=19% Similarity=0.187 Sum_probs=63.9
Q ss_pred CCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccC
Q 006794 335 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 414 (631)
Q Consensus 335 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 414 (631)
..|++++++++. ++. +..-.+..|.++.|+++.+....... .+.+++|+.|+++++......|+..- +.
T Consensus 284 q~LtelDLS~N~-I~~--iDESvKL~Pkir~L~lS~N~i~~v~n----La~L~~L~~LDLS~N~Ls~~~Gwh~K----LG 352 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQ--IDESVKLAPKLRRLILSQNRIRTVQN----LAELPQLQLLDLSGNLLAECVGWHLK----LG 352 (490)
T ss_pred hhhhhccccccc-hhh--hhhhhhhccceeEEeccccceeeehh----hhhcccceEeecccchhHhhhhhHhh----hc
Confidence 345555665543 221 12222334777777776643222222 22456777777776543333333322 25
Q ss_pred CCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccc
Q 006794 415 KLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGL 477 (631)
Q Consensus 415 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 477 (631)
+.+.|.++++ .++++ ..++.+.+|..|++.++..-.-.....++ .+|.|+++.+.++
T Consensus 353 NIKtL~La~N-~iE~L----SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG-~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 353 NIKTLKLAQN-KIETL----SGLRKLYSLVNLDLSSNQIEELDEVNHIG-NLPCLETLRLTGN 409 (490)
T ss_pred CEeeeehhhh-hHhhh----hhhHhhhhheeccccccchhhHHHhcccc-cccHHHHHhhcCC
Confidence 6666666652 22222 22345667777777776532223333343 3477777777663
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.57 E-value=8.2e-05 Score=81.52 Aligned_cols=64 Identities=22% Similarity=0.172 Sum_probs=34.3
Q ss_pred hCCCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCC
Q 006794 201 ECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCP 266 (631)
Q Consensus 201 ~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 266 (631)
.+|+|++|-+.....--......++..+|.|++|++++|.... +....+.. +-+|++|+++++.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~-Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGE-LVHLRYLDLSDTG 606 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhh-hhhhhcccccCCC
Confidence 4567777777653210111122334557788888887654332 22333433 6667777777644
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.49 E-value=0.00014 Score=79.88 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=18.1
Q ss_pred HhCCCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecC
Q 006794 200 KECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIES 238 (631)
Q Consensus 200 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~ 238 (631)
..+|.|+.|||++|..+.. ++.....+-+|+.|++++
T Consensus 568 ~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSD 604 (889)
T ss_pred hhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccC
Confidence 3455666666655433322 333333455555555554
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.39 E-value=4.3e-05 Score=53.72 Aligned_cols=59 Identities=32% Similarity=0.341 Sum_probs=31.3
Q ss_pred cccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCC
Q 006794 521 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSC 583 (631)
Q Consensus 521 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c 583 (631)
|+|+.|++++| +++......+ ..+++|+.|++++|.++......+. .+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f-~~l~~L~~L~l~~N~l~~i~~~~f~--~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF-SNLPNLETLDLSNNNLTSIPPDAFS--NLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT-TTGTTESEEEETSSSESEEETTTTT--TSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHH-cCCCCCCEeEccCCccCccCHHHHc--CCCCCCEEeCcCC
Confidence 35556666653 5544332222 2366666666666665543333333 5666666666664
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.98 E-value=0.00024 Score=49.86 Aligned_cols=60 Identities=28% Similarity=0.239 Sum_probs=45.6
Q ss_pred CcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCccccccccccc
Q 006794 547 MFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCN 610 (631)
Q Consensus 547 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~ 610 (631)
|+|++|++++|.++......+. .+++|++|++++|. ++...... ...+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~--~l~~L~~L~l~~N~-l~~i~~~~-f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFS--NLPNLETLDLSNNN-LTSIPPDA-FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTT--TGTTESEEEETSSS-ESEEETTT-TTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHc--CCCCCCEeEccCCc-cCccCHHH-HcCCCCCCEEeCcCCc
Confidence 6899999999998865544444 78899999999854 76543333 4456789999999953
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.95 E-value=0.0017 Score=63.84 Aligned_cols=120 Identities=18% Similarity=0.298 Sum_probs=57.8
Q ss_pred cCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCC
Q 006794 359 GCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLS 438 (631)
Q Consensus 359 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 438 (631)
.|++++.|++++| .+..- + .-.++|++|.+.+|..++...- . ..++|+.|.+++|..+..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sL--P---~LP~sLtsL~Lsnc~nLtsLP~--~---LP~nLe~L~Ls~Cs~L~sL-------- 110 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL--P---VLPNELTEITIENCNNLTTLPG--S---IPEGLEKLTVCHCPEISGL-------- 110 (426)
T ss_pred HhcCCCEEEeCCC-CCccc--C---CCCCCCcEEEccCCCCcccCCc--h---hhhhhhheEccCccccccc--------
Confidence 3577888888776 33211 1 1124577777777665433221 0 1156777777776544322
Q ss_pred CCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCC
Q 006794 439 PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNL 507 (631)
Q Consensus 439 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l 507 (631)
.++|+.|++..+. .. .+....++|+.|.+.+.......++. ...|++|++|.+++|..+
T Consensus 111 -P~sLe~L~L~~n~-~~-----~L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 111 -PESVRSLEIKGSA-TD-----SIKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI 169 (426)
T ss_pred -ccccceEEeCCCC-Cc-----ccccCcchHhheeccccccccccccc---cccCCcccEEEecCCCcc
Confidence 3456666665322 11 11222245666666432211111111 113346777777666543
No 51
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.94 E-value=0.00077 Score=37.54 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=18.5
Q ss_pred cCcccccccccccCCCHHHHHHHHh
Q 006794 598 GKTLVGLNLQNCNSINSSTVARLVE 622 (631)
Q Consensus 598 ~~~L~~L~l~~c~~l~~~~~~~l~~ 622 (631)
|++|+.|+|++|+++++.|+..+.+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 4667788888888888887777653
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.94 E-value=0.0018 Score=63.65 Aligned_cols=139 Identities=17% Similarity=0.299 Sum_probs=79.5
Q ss_pred HhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHh
Q 006794 384 KAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLG 463 (631)
Q Consensus 384 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~ 463 (631)
..+++++.|++++|. +.... ...++|+.|.+++|..+..++.. ..++|++|.+++|..+.
T Consensus 49 ~~~~~l~~L~Is~c~-L~sLP------~LP~sLtsL~Lsnc~nLtsLP~~-----LP~nLe~L~Ls~Cs~L~-------- 108 (426)
T PRK15386 49 EEARASGRLYIKDCD-IESLP------VLPNELTEITIENCNNLTTLPGS-----IPEGLEKLTVCHCPEIS-------- 108 (426)
T ss_pred HHhcCCCEEEeCCCC-CcccC------CCCCCCcEEEccCCCCcccCCch-----hhhhhhheEccCccccc--------
Confidence 457899999999883 44332 12257999999988877555321 24688888888886543
Q ss_pred hcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHH
Q 006794 464 KLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIG 543 (631)
Q Consensus 464 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 543 (631)
...++|+.|++.. ..... +...|++|+.|.+.+........+... -.++|+.|.+++|..+... .
T Consensus 109 sLP~sLe~L~L~~-n~~~~------L~~LPssLk~L~I~~~n~~~~~~lp~~---LPsSLk~L~Is~c~~i~LP--~--- 173 (426)
T PRK15386 109 GLPESVRSLEIKG-SATDS------IKNVPNGLTSLSINSYNPENQARIDNL---ISPSLKTLSLTGCSNIILP--E--- 173 (426)
T ss_pred ccccccceEEeCC-CCCcc------cccCcchHhheeccccccccccccccc---cCCcccEEEecCCCcccCc--c---
Confidence 1235788888764 22221 122344778787754221111111100 1257888888887544211 0
Q ss_pred hcCCcCCEEEecCC
Q 006794 544 NNCMFLSYLDVSKC 557 (631)
Q Consensus 544 ~~~~~L~~L~L~~~ 557 (631)
..-.+|+.|.++.+
T Consensus 174 ~LP~SLk~L~ls~n 187 (426)
T PRK15386 174 KLPESLQSITLHIE 187 (426)
T ss_pred cccccCcEEEeccc
Confidence 11246777877665
No 53
>PLN03150 hypothetical protein; Provisional
Probab=96.86 E-value=0.0017 Score=69.68 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=18.2
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 561 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~ 561 (631)
+++|+.|+|++ +.++......+. .+++|+.|+|++|.++.
T Consensus 465 l~~L~~LdLs~-N~lsg~iP~~l~-~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 465 ITSLEVLDLSY-NSFNGSIPESLG-QLTSLRILNLNGNSLSG 504 (623)
T ss_pred CCCCCEEECCC-CCCCCCCchHHh-cCCCCCEEECcCCcccc
Confidence 45555555555 344332222222 25555555555554443
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.76 E-value=0.00018 Score=73.57 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=35.5
Q ss_pred HHHHHhCCCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEc
Q 006794 196 LEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSI 262 (631)
Q Consensus 196 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 262 (631)
..+...++.++.|.+-....-.......++ -+.+|++|.+.+|+--+..++..+.. +|+.|..
T Consensus 77 q~i~d~lqkt~~lkl~~~pa~~pt~pi~if-pF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC 139 (1096)
T KOG1859|consen 77 QRILDFLQKTKVLKLLPSPARDPTEPISIF-PFRSLRVLELRGCDLSTAKGLQELRH---QLEKLIC 139 (1096)
T ss_pred HHHHHHHhhheeeeecccCCCCCCCCceec-cccceeeEEecCcchhhhhhhHHHHH---hhhhhhh
Confidence 333444566666666543221111112232 27899999999987555566666655 6776653
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.66 E-value=0.001 Score=68.33 Aligned_cols=56 Identities=23% Similarity=0.209 Sum_probs=30.5
Q ss_pred hHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHH
Q 006794 168 GLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAI 224 (631)
Q Consensus 168 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l 224 (631)
.+..+..-.++++.|.+...+.-.......++ .|..|+.|.+.+|+--+..++..+
T Consensus 75 qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~if-pF~sLr~LElrg~~L~~~~GL~~l 130 (1096)
T KOG1859|consen 75 QLQRILDFLQKTKVLKLLPSPARDPTEPISIF-PFRSLRVLELRGCDLSTAKGLQEL 130 (1096)
T ss_pred HHHHHHHHHhhheeeeecccCCCCCCCCceec-cccceeeEEecCcchhhhhhhHHH
Confidence 34455555567777777554333332222333 577888888888754333344443
No 56
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.66 E-value=0.0011 Score=64.35 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=36.5
Q ss_pred CCcCCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHHhh
Q 006794 47 PSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTS 86 (631)
Q Consensus 47 ~~i~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 86 (631)
..|++||+|++..|.++|++..|+++.+.|||.||.++..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4689999999999999998789999999999999998753
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.0007 Score=61.21 Aligned_cols=121 Identities=21% Similarity=0.311 Sum_probs=82.4
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhh-HHhhhhccCC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMG-ISALSHAEQL 573 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~-~~~l~~~~~~ 573 (631)
+.++|+..|| .++|..+- . ..+.|+.|.|+- |+|+.. ..+. .|++|++|.|..|.|.+.. +.-+. ++|
T Consensus 20 ~vkKLNcwg~-~L~DIsic---~-kMp~lEVLsLSv-NkIssL--~pl~-rCtrLkElYLRkN~I~sldEL~YLk--nlp 88 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDISIC---E-KMPLLEVLSLSV-NKISSL--APLQ-RCTRLKELYLRKNCIESLDELEYLK--NLP 88 (388)
T ss_pred HhhhhcccCC-CccHHHHH---H-hcccceeEEeec-cccccc--hhHH-HHHHHHHHHHHhcccccHHHHHHHh--cCc
Confidence 6778888887 67766543 3 578999999987 677643 3333 4999999999999988743 33334 889
Q ss_pred CccEEeccCCCCCCcchHH---HHHHhcCcccccccccccCCCHHHH-HHHHhhc-ccccc
Q 006794 574 NLQVLSLSSCSEVSNKSMP---ALKKLGKTLVGLNLQNCNSINSSTV-ARLVESL-WRCDI 629 (631)
Q Consensus 574 ~L~~L~l~~c~~l~~~~~~---~l~~~~~~L~~L~l~~c~~l~~~~~-~~l~~~l-~~~~~ 629 (631)
+|+.|+|..+|-....+-. ...+..|+|+.||= ..++...+ +++++-. |.||+
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn---v~VteeEle~ALr~g~~PE~~~ 146 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN---VPVTEEELEEALRDGIYPECDM 146 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhccC---ccccHHHHHHHHhcCCCCchhh
Confidence 9999999998755444332 35566788988853 34565444 4455554 66664
No 58
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.37 E-value=0.00096 Score=68.09 Aligned_cols=204 Identities=25% Similarity=0.271 Sum_probs=131.1
Q ss_pred CcEEecccccCCCcc-ccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCC----CCcEEecccccCCCchhhHHHHh
Q 006794 416 LKSLTLVKCMGIKDM-ATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCP----QLQHVDLSGLYGITDVGIFPLLE 490 (631)
Q Consensus 416 L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~----~L~~L~l~~~~~l~~~~~~~l~~ 490 (631)
+..|.+.+|..-... ......+...++|+.|+++++. +.+.....+...++ .++.|++.. ..++..+...+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~-c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVS-CSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhc-ccccccchHHHHH
Confidence 566667665533221 1122235668889999999886 55666666655433 356677776 4555555555444
Q ss_pred hc--ccCccEEecCCCCCCchHHHHHHHhh------cCcccCeecccCCCCCChHHHHHHHh---cCCc-CCEEEecCCc
Q 006794 491 SC--KAGLVKVNLSGCLNLTDEVVLALARL------HSETLELLNLDGCRKITDASLVAIGN---NCMF-LSYLDVSKCA 558 (631)
Q Consensus 491 ~~--~~~L~~L~l~~c~~l~~~~~~~l~~~------~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~-L~~L~L~~~~ 558 (631)
.. ...++.++++.+... ..+...+... ...++++|.+.+| .++......+.. .-+. +.+|++..|.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 32 247888888775433 3332222220 2457889999996 676655555442 2344 6678999999
Q ss_pred cChhhHHhhhhcc---C-CCccEEeccCCCCCCcchHHHHH---HhcCcccccccccccCCCHHHHHHHHhhccc
Q 006794 559 ITDMGISALSHAE---Q-LNLQVLSLSSCSEVSNKSMPALK---KLGKTLVGLNLQNCNSINSSTVARLVESLWR 626 (631)
Q Consensus 559 l~~~~~~~l~~~~---~-~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~l~~c~~l~~~~~~~l~~~l~~ 626 (631)
+.|.++..+. .. . +.++.++++.|. +++.....+. ..++.++++.+++ +.+++.+...+.+.+.+
T Consensus 245 l~d~g~~~L~-~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~-n~l~~~~~~~~~~~l~~ 316 (478)
T KOG4308|consen 245 LGDVGVEKLL-PCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSN-NPLTDYGVELLLEALER 316 (478)
T ss_pred cchHHHHHHH-HHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhccc-CccccHHHHHHHHHhhh
Confidence 9988887776 32 2 456899999976 7666665543 3467899999998 88999998888877644
No 59
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.33 E-value=0.0027 Score=64.85 Aligned_cols=203 Identities=25% Similarity=0.310 Sum_probs=129.9
Q ss_pred cCCCcEEecccccCCCccccc--cccCCCC-CCCceEeccCCCCCCHHH----HHHHhhcCCCCcEEecccccCCCchhh
Q 006794 413 ASKLKSLTLVKCMGIKDMATE--MPMLSPN-CSLRSLSIRNCPGFGNAS----LAMLGKLCPQLQHVDLSGLYGITDVGI 485 (631)
Q Consensus 413 ~~~L~~L~l~~~~~~~~~~~~--~~~~~~~-~~L~~L~l~~~~~~~~~~----l~~l~~~~~~L~~L~l~~~~~l~~~~~ 485 (631)
.++|+.|++++++.- +.... ...+... ..|+.|.+..|. +++.. ...+.+ .+.++.++++.+ .+...+.
T Consensus 114 ~~~L~~L~l~~n~l~-~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~~L~~-~~~l~~l~l~~n-~l~~~g~ 189 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLG-DEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAAVLEK-NEHLTELDLSLN-GLIELGL 189 (478)
T ss_pred cccHhHhhcccCCCc-cHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHHHHhc-ccchhHHHHHhc-ccchhhh
Confidence 489999999996644 22211 1122333 667888888876 33332 233333 678888898874 3434444
Q ss_pred HHHHhh------cccCccEEecCCCCCCchHHHHHHHhh--cCcc-cCeecccCCCCCChHHHHHHHhcC----CcCCEE
Q 006794 486 FPLLES------CKAGLVKVNLSGCLNLTDEVVLALARL--HSET-LELLNLDGCRKITDASLVAIGNNC----MFLSYL 552 (631)
Q Consensus 486 ~~l~~~------~~~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~-L~~L~l~~c~~l~~~~~~~l~~~~----~~L~~L 552 (631)
..+.+. ...++++|.+++| .++......+... ..+. ++.|++.. +.+.|.++..+...+ +.++++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l 267 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVL 267 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhh
Confidence 333222 1237999999997 5555544443331 2344 67799977 799998888777544 456999
Q ss_pred EecCCccChhhHHhhhh--ccCCCccEEeccCCCCCCcchHHHHHHh---cCcccccccccccCCCHHHHHHHHh
Q 006794 553 DVSKCAITDMGISALSH--AEQLNLQVLSLSSCSEVSNKSMPALKKL---GKTLVGLNLQNCNSINSSTVARLVE 622 (631)
Q Consensus 553 ~L~~~~l~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~L~~L~l~~c~~l~~~~~~~l~~ 622 (631)
+++.|.+++.+...+.. ..++.++.+.++.++ +++.....+... ...+..+-+.++...+..+...+..
T Consensus 268 ~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 341 (478)
T KOG4308|consen 268 DLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP-LTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAE 341 (478)
T ss_pred hhhcCCccccchHHHHHHHhhhHHHHHhhcccCc-cccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHH
Confidence 99999999988776653 377899999999965 766666553333 2236667777766666666555443
No 60
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.29 E-value=0.00011 Score=61.09 Aligned_cols=112 Identities=16% Similarity=0.050 Sum_probs=49.5
Q ss_pred CCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHH
Q 006794 437 LSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALA 516 (631)
Q Consensus 437 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 516 (631)
++.+++|+.|++..++... +..-...+|.|+.|++.. +++....+..-+-.. ..|+.|.++. +.+.... ..+.
T Consensus 75 issl~klr~lnvgmnrl~~---lprgfgs~p~levldlty-nnl~e~~lpgnff~m-~tlralyl~d-ndfe~lp-~dvg 147 (264)
T KOG0617|consen 75 ISSLPKLRILNVGMNRLNI---LPRGFGSFPALEVLDLTY-NNLNENSLPGNFFYM-TTLRALYLGD-NDFEILP-PDVG 147 (264)
T ss_pred hhhchhhhheecchhhhhc---CccccCCCchhhhhhccc-cccccccCCcchhHH-HHHHHHHhcC-CCcccCC-hhhh
Confidence 3455666666655443110 011112346677777766 343322221100000 1456666655 2322111 1122
Q ss_pred hhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccC
Q 006794 517 RLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAIT 560 (631)
Q Consensus 517 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~ 560 (631)
.+++|+.|.+...+-++- ...+ +.+..|++|+|.+|+++
T Consensus 148 --~lt~lqil~lrdndll~l--pkei-g~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 148 --KLTNLQILSLRDNDLLSL--PKEI-GDLTRLRELHIQGNRLT 186 (264)
T ss_pred --hhcceeEEeeccCchhhC--cHHH-HHHHHHHHHhcccceee
Confidence 356777777666322211 1122 23666777777777644
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.26 E-value=0.0026 Score=58.90 Aligned_cols=62 Identities=23% Similarity=0.245 Sum_probs=46.5
Q ss_pred CCCCcCCCC----HHHHHHHhccCCCcccchhhhhhhHHHHHHHhh-hhhhhhccchhhHHHhhhccccccccc
Q 006794 45 NQPSIDVLP----DECLYEIFRRLPSGKERSFAACVSKKWLMMLTS-IRKAEICKSEKLEKEVVASVSDHVEMV 113 (631)
Q Consensus 45 ~~~~i~~LP----~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~ 113 (631)
..|.+..|| ++|-..||+||+ ..++.+|-+|||+|+++... ..| ..+.++...+.+.|+.+.
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l~dg~~W------KkLie~~vr~dslWrgl~ 137 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVLSDGMLW------KKLIERMVRTDSLWRGLS 137 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHhccchHH------HHHHHHhcchHHHHhhhh
Confidence 458889999 999999999999 99999999999999997632 111 234444444556665544
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.25 E-value=0.0094 Score=38.18 Aligned_cols=33 Identities=42% Similarity=0.431 Sum_probs=14.3
Q ss_pred cCCEEEecCCccChhhHHhhhhccCCCccEEeccCC
Q 006794 548 FLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSC 583 (631)
Q Consensus 548 ~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c 583 (631)
+|+.|++++|+|++... .+. .+++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~--~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELS--NLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGT--TCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCc-hHh--CCCCCCEEEecCC
Confidence 45555555555554221 122 4555555555554
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.22 E-value=0.0056 Score=39.20 Aligned_cols=38 Identities=34% Similarity=0.376 Sum_probs=27.8
Q ss_pred cccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh
Q 006794 521 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 561 (631)
Q Consensus 521 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~ 561 (631)
++|++|++++ +++++.. .....|++|+.|++++|.+++
T Consensus 1 ~~L~~L~l~~-N~i~~l~--~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLP--PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETS-SS-SSHG--GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccC-CCCcccC--chHhCCCCCCEEEecCCCCCC
Confidence 4788999988 5887643 223469999999999999886
No 64
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.13 E-value=0.0052 Score=34.16 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=16.5
Q ss_pred CCCccEEeccCCCCCCcchHHHHH
Q 006794 572 QLNLQVLSLSSCSEVSNKSMPALK 595 (631)
Q Consensus 572 ~~~L~~L~l~~c~~l~~~~~~~l~ 595 (631)
|++|++|+|++|++|||.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 456777777777777777766544
No 65
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.63 E-value=0.0067 Score=55.92 Aligned_cols=40 Identities=33% Similarity=0.379 Sum_probs=34.2
Q ss_pred CCCCCcCCCCHHHHHHHhcc-----CCCcccchhhhhhhHHHHHHH
Q 006794 44 ENQPSIDVLPDECLYEIFRR-----LPSGKERSFAACVSKKWLMML 84 (631)
Q Consensus 44 ~~~~~i~~LP~eil~~If~~-----L~~~~d~~~~~~Vcr~W~~~~ 84 (631)
+.-..|..|||||+..||.. ++ .+++.++++|||.|+..+
T Consensus 102 p~~~~~~~LPdEvLm~I~~~vv~~~~d-~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 102 PELISISVLPDEVLMRIFRWVVSSLLD-LRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred hhhhhhhhCCHHHHHHHHHHHHhhhcc-hhhHHHhHhhHHHHHHHH
Confidence 34455889999999999985 55 799999999999999976
No 66
>PLN03150 hypothetical protein; Provisional
Probab=95.50 E-value=0.025 Score=60.85 Aligned_cols=107 Identities=22% Similarity=0.302 Sum_probs=47.7
Q ss_pred CceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcc
Q 006794 443 LRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSET 522 (631)
Q Consensus 443 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~ 522 (631)
++.|+++++. +.......+. .+++|+.|+|++ +.+... +...+..++ +|+.|+|+++ .++......+. .+++
T Consensus 420 v~~L~L~~n~-L~g~ip~~i~-~L~~L~~L~Ls~-N~l~g~-iP~~~~~l~-~L~~LdLs~N-~lsg~iP~~l~--~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQG-LRGFIPNDIS-KLRHLQSINLSG-NSIRGN-IPPSLGSIT-SLEVLDLSYN-SFNGSIPESLG--QLTS 491 (623)
T ss_pred EEEEECCCCC-ccccCCHHHh-CCCCCCEEECCC-CcccCc-CChHHhCCC-CCCEEECCCC-CCCCCCchHHh--cCCC
Confidence 5556665553 2211112222 346666666665 233211 111122222 5666666663 44433333333 3566
Q ss_pred cCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCc
Q 006794 523 LELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCA 558 (631)
Q Consensus 523 L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~ 558 (631)
|+.|+|++ +.++......+.....++..+++.+|.
T Consensus 492 L~~L~Ls~-N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 492 LRILNLNG-NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCEEECcC-CcccccCChHHhhccccCceEEecCCc
Confidence 66666666 344433333333323345555655553
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.0046 Score=56.12 Aligned_cols=103 Identities=22% Similarity=0.296 Sum_probs=70.3
Q ss_pred CCCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHh
Q 006794 147 HGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAE 226 (631)
Q Consensus 147 ~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 226 (631)
..+++.|+..++ ++.|..+ ...++.|+.|.|+-. .++ .+.. +..|.+|++|.|.. +.+.+..-....+
T Consensus 18 l~~vkKLNcwg~----~L~DIsi---c~kMp~lEVLsLSvN-kIs--sL~p-l~rCtrLkElYLRk-N~I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGC----GLDDISI---CEKMPLLEVLSLSVN-KIS--SLAP-LQRCTRLKELYLRK-NCIESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCC----CccHHHH---HHhcccceeEEeecc-ccc--cchh-HHHHHHHHHHHHHh-cccccHHHHHHHh
Confidence 467888999988 6777554 456889999999753 443 2222 34889999999987 4566544445557
Q ss_pred hCCCCcEEeecCCCCCChh---HHHHHhhcCCCCcEEE
Q 006794 227 NCPNLTSLNIESCSKIGND---GLQAIGKFCRNLQCLS 261 (631)
Q Consensus 227 ~l~~L~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~ 261 (631)
++|+|+.|.|..++..... --....+.+|+|+.|+
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8999999999875433222 2233445589999886
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.35 E-value=0.0046 Score=55.84 Aligned_cols=91 Identities=22% Similarity=0.151 Sum_probs=49.5
Q ss_pred ccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhc
Q 006794 332 QGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSN 411 (631)
Q Consensus 332 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 411 (631)
..+++|++|.++.+..-...++..++..+|+|++|+++++ .+.+..-..-...+++|..|++.+|..............
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 3456777777776632223344555566688888888875 343311111223456777777777764443333333333
Q ss_pred ccCCCcEEeccc
Q 006794 412 SASKLKSLTLVK 423 (631)
Q Consensus 412 ~~~~L~~L~l~~ 423 (631)
.+++|+.|+-..
T Consensus 141 ll~~L~~LD~~d 152 (260)
T KOG2739|consen 141 LLPSLKYLDGCD 152 (260)
T ss_pred Hhhhhccccccc
Confidence 336666665444
No 69
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.34 E-value=0.0007 Score=56.44 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=76.0
Q ss_pred cccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCC--CchhhHHHHhhcccCccEEecCCCCCCchHH
Q 006794 434 MPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGI--TDVGIFPLLESCKAGLVKVNLSGCLNLTDEV 511 (631)
Q Consensus 434 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l--~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~ 511 (631)
++.+..+.+|+.|++.++. +.+.. .. ...+|+|+.|.++- +.+ ...|+.+ .| .|+.|++++ +++....
T Consensus 49 ppnia~l~nlevln~~nnq-ie~lp-~~-issl~klr~lnvgm-nrl~~lprgfgs----~p-~levldlty-nnl~e~~ 118 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNNQ-IEELP-TS-ISSLPKLRILNVGM-NRLNILPRGFGS----FP-ALEVLDLTY-NNLNENS 118 (264)
T ss_pred CCcHHHhhhhhhhhcccch-hhhcC-hh-hhhchhhhheecch-hhhhcCccccCC----Cc-hhhhhhccc-ccccccc
Confidence 3445567777777777653 32211 12 22458888888764 222 2223322 22 788888887 4555544
Q ss_pred HHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh--hhHHhhhhccCCCccEEeccCCCCCC
Q 006794 512 VLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD--MGISALSHAEQLNLQVLSLSSCSEVS 587 (631)
Q Consensus 512 ~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~--~~~~~l~~~~~~~L~~L~l~~c~~l~ 587 (631)
+..-.. .+..|+-|.++. +...-.. .. .+.+++|+.|.+..|.+-. ..+..+. .|++|.+.++. ++
T Consensus 119 lpgnff-~m~tlralyl~d-ndfe~lp-~d-vg~lt~lqil~lrdndll~lpkeig~lt-----~lrelhiqgnr-l~ 186 (264)
T KOG0617|consen 119 LPGNFF-YMTTLRALYLGD-NDFEILP-PD-VGKLTNLQILSLRDNDLLSLPKEIGDLT-----RLRELHIQGNR-LT 186 (264)
T ss_pred CCcchh-HHHHHHHHHhcC-CCcccCC-hh-hhhhcceeEEeeccCchhhCcHHHHHHH-----HHHHHhcccce-ee
Confidence 332111 356777888876 3432111 11 2348889999998887433 2344444 88999998854 54
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.30 E-value=0.0087 Score=54.09 Aligned_cols=86 Identities=26% Similarity=0.245 Sum_probs=50.4
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh-hhHHhhhhccCCCccEEeccCCCCCCc--chHHHHHH
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD-MGISALSHAEQLNLQVLSLSSCSEVSN--KSMPALKK 596 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~~~L~~L~l~~c~~l~~--~~~~~l~~ 596 (631)
+++|+.|.++....-...++..++..+|+|++|++++|.+.+ ..+..+. .+++|..|++.+|+ .+. ..-+.+..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~--~l~nL~~Ldl~n~~-~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK--ELENLKSLDLFNCS-VTNLDDYREKVFL 140 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh--hhcchhhhhcccCC-ccccccHHHHHHH
Confidence 567777777652112234445555667888888888887664 2233333 55677778887775 322 12233555
Q ss_pred hcCccccccccc
Q 006794 597 LGKTLVGLNLQN 608 (631)
Q Consensus 597 ~~~~L~~L~l~~ 608 (631)
..++|.+|+-..
T Consensus 141 ll~~L~~LD~~d 152 (260)
T KOG2739|consen 141 LLPSLKYLDGCD 152 (260)
T ss_pred Hhhhhccccccc
Confidence 566677776544
No 71
>PF13013 F-box-like_2: F-box-like domain
Probab=95.21 E-value=0.02 Score=44.69 Aligned_cols=34 Identities=18% Similarity=-0.001 Sum_probs=29.7
Q ss_pred CcCCCCHHHHHHHhccCCCcccchhhhhhhH--HHHH
Q 006794 48 SIDVLPDECLYEIFRRLPSGKERSFAACVSK--KWLM 82 (631)
Q Consensus 48 ~i~~LP~eil~~If~~L~~~~d~~~~~~Vcr--~W~~ 82 (631)
.+.+||.||+..||+|.+ ..+...+...|+ +|..
T Consensus 21 tl~DLP~ELl~~I~~~C~-~~~l~~l~~~~~~~r~~r 56 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCN-DPILLALSRTCRAYRSWR 56 (109)
T ss_pred chhhChHHHHHHHHhhcC-cHHHHHHHHHHHHHHHHH
Confidence 489999999999999999 989999999888 4443
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.83 E-value=0.016 Score=46.85 Aligned_cols=61 Identities=20% Similarity=0.162 Sum_probs=33.2
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 561 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~ 561 (631)
.|+..+|++ +.+.+..-. +.. .++.++.|++++ +.+.+...+ ++. +|.|+.|++++|.+..
T Consensus 54 el~~i~ls~-N~fk~fp~k-ft~-kf~t~t~lNl~~-neisdvPeE-~Aa-m~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 54 ELTKISLSD-NGFKKFPKK-FTI-KFPTATTLNLAN-NEISDVPEE-LAA-MPALRSLNLRFNPLNA 114 (177)
T ss_pred eEEEEeccc-chhhhCCHH-Hhh-ccchhhhhhcch-hhhhhchHH-Hhh-hHHhhhcccccCcccc
Confidence 455566665 334333222 222 355666666666 566665544 433 6667777776666543
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.79 E-value=0.021 Score=30.92 Aligned_cols=23 Identities=48% Similarity=0.453 Sum_probs=14.1
Q ss_pred CCcCCEEEecCCccChhhHHhhh
Q 006794 546 CMFLSYLDVSKCAITDMGISALS 568 (631)
Q Consensus 546 ~~~L~~L~L~~~~l~~~~~~~l~ 568 (631)
+++|++|+|++|.|+++++..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46677777777777777766554
No 74
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.34 E-value=0.014 Score=50.63 Aligned_cols=106 Identities=16% Similarity=0.093 Sum_probs=57.2
Q ss_pred CCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChH-HHHHHHhc
Q 006794 467 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDA-SLVAIGNN 545 (631)
Q Consensus 467 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~ 545 (631)
-+...+++++++......+.. . +.|.+|.+++ +.++.....- .. .+++|..|.+.+ +.+... .+..++.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~----l-~rL~tLll~n-NrIt~I~p~L-~~-~~p~l~~L~Ltn-Nsi~~l~dl~pLa~- 111 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPH----L-PRLHTLLLNN-NRITRIDPDL-DT-FLPNLKTLILTN-NSIQELGDLDPLAS- 111 (233)
T ss_pred cccceecccccchhhcccCCC----c-cccceEEecC-Ccceeeccch-hh-hccccceEEecC-cchhhhhhcchhcc-
Confidence 455666666533222222221 1 3677777766 4565443321 11 357777777777 455432 2333333
Q ss_pred CCcCCEEEecCCccChhhHHh-hhhccCCCccEEeccC
Q 006794 546 CMFLSYLDVSKCAITDMGISA-LSHAEQLNLQVLSLSS 582 (631)
Q Consensus 546 ~~~L~~L~L~~~~l~~~~~~~-l~~~~~~~L~~L~l~~ 582 (631)
||.|+.|.+-+|++++..-.. ..-..+|+|+.|++..
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 777888877777766542211 1113677777777766
No 75
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.15 E-value=0.03 Score=48.60 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=11.7
Q ss_pred CCCCCCCceEeccCCCC
Q 006794 437 LSPNCSLRSLSIRNCPG 453 (631)
Q Consensus 437 ~~~~~~L~~L~l~~~~~ 453 (631)
+..+|+|+.|+..+...
T Consensus 136 l~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKVTR 152 (233)
T ss_pred EEecCcceEeehhhhhH
Confidence 44677888888777653
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.54 E-value=0.013 Score=47.37 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=46.8
Q ss_pred CccEEecCCCCCCch-HHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCC
Q 006794 495 GLVKVNLSGCLNLTD-EVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 573 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~-~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~ 573 (631)
.+-.++|+.|.-..- .....+. ....|...+|++ |.+.+.. +.+....|.++.|++++|.+++...+ ++ .++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~--~~~el~~i~ls~-N~fk~fp-~kft~kf~t~t~lNl~~neisdvPeE-~A--am~ 100 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLS--KGYELTKISLSD-NGFKKFP-KKFTIKFPTATTLNLANNEISDVPEE-LA--AMP 100 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHh--CCceEEEEeccc-chhhhCC-HHHhhccchhhhhhcchhhhhhchHH-Hh--hhH
Confidence 355566666643311 1222222 245566666766 4544332 23444466777777777777775544 44 677
Q ss_pred CccEEeccCCC
Q 006794 574 NLQVLSLSSCS 584 (631)
Q Consensus 574 ~L~~L~l~~c~ 584 (631)
.|+.|+++.++
T Consensus 101 aLr~lNl~~N~ 111 (177)
T KOG4579|consen 101 ALRSLNLRFNP 111 (177)
T ss_pred HhhhcccccCc
Confidence 77777777765
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.97 E-value=0.12 Score=52.50 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=18.3
Q ss_pred CCcCCEEEecCCccChhhHHhhhhccCCCccEEeccC
Q 006794 546 CMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSS 582 (631)
Q Consensus 546 ~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~ 582 (631)
+++|+.|++++|.+++... +. ...+++.|++++
T Consensus 254 l~~l~~L~~s~n~i~~i~~--~~--~~~~l~~L~~s~ 286 (394)
T COG4886 254 LSNLETLDLSNNQISSISS--LG--SLTNLRELDLSG 286 (394)
T ss_pred ccccceecccccccccccc--cc--ccCccCEEeccC
Confidence 5556666666666555322 22 444666666666
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.54 E-value=0.076 Score=28.71 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=12.4
Q ss_pred CcccccccccccCCCHHHHHHHH
Q 006794 599 KTLVGLNLQNCNSINSSTVARLV 621 (631)
Q Consensus 599 ~~L~~L~l~~c~~l~~~~~~~l~ 621 (631)
++|+.|+|++|. +++++++.+.
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHhC
Confidence 456666776643 6666666654
No 79
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.46 E-value=0.4 Score=48.78 Aligned_cols=148 Identities=26% Similarity=0.246 Sum_probs=82.3
Q ss_pred CCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCc
Q 006794 442 SLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSE 521 (631)
Q Consensus 442 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 521 (631)
+|+.|+++++. +... ..-...+++|+.|++++ +.+.+-.... ... +.|+.|.+++ +.+.+..... . ...
T Consensus 141 nL~~L~l~~N~-i~~l--~~~~~~l~~L~~L~l~~-N~l~~l~~~~--~~~-~~L~~L~ls~-N~i~~l~~~~--~-~~~ 209 (394)
T COG4886 141 NLKELDLSDNK-IESL--PSPLRNLPNLKNLDLSF-NDLSDLPKLL--SNL-SNLNNLDLSG-NKISDLPPEI--E-LLS 209 (394)
T ss_pred hcccccccccc-hhhh--hhhhhccccccccccCC-chhhhhhhhh--hhh-hhhhheeccC-CccccCchhh--h-hhh
Confidence 66666666654 2211 01123457777777776 3333221110 011 2677777777 3554433221 1 234
Q ss_pred ccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh--hhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcC
Q 006794 522 TLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD--MGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGK 599 (631)
Q Consensus 522 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~--~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 599 (631)
.|++|.+++...+.... ....++++..+.+.++.+.+ ..+. ..+.++.|+++++. +++... .....
T Consensus 210 ~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n~~~~~~~~~~-----~l~~l~~L~~s~n~-i~~i~~---~~~~~ 277 (394)
T COG4886 210 ALEELDLSNNSIIELLS---SLSNLKNLSGLELSNNKLEDLPESIG-----NLSNLETLDLSNNQ-ISSISS---LGSLT 277 (394)
T ss_pred hhhhhhhcCCcceecch---hhhhcccccccccCCceeeeccchhc-----cccccceecccccc-cccccc---ccccC
Confidence 58888888732332221 12347788888888887765 3333 45589999999954 655333 33345
Q ss_pred cccccccccccCCC
Q 006794 600 TLVGLNLQNCNSIN 613 (631)
Q Consensus 600 ~L~~L~l~~c~~l~ 613 (631)
+++.|++++ +.+.
T Consensus 278 ~l~~L~~s~-n~~~ 290 (394)
T COG4886 278 NLRELDLSG-NSLS 290 (394)
T ss_pred ccCEEeccC-cccc
Confidence 799999988 4444
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.85 E-value=0.35 Score=27.30 Aligned_cols=22 Identities=36% Similarity=0.375 Sum_probs=17.0
Q ss_pred CcCCEEEecCCccChhhHHhhh
Q 006794 547 MFLSYLDVSKCAITDMGISALS 568 (631)
Q Consensus 547 ~~L~~L~L~~~~l~~~~~~~l~ 568 (631)
++|++|+|++|.+++++...++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 4678888888888887777665
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=89.14 E-value=0.14 Score=53.49 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=39.6
Q ss_pred ccCCCCCcCCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHHhh
Q 006794 42 EFENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTS 86 (631)
Q Consensus 42 ~~~~~~~i~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 86 (631)
+....+.+..||.|+-.+||.||+ .+++..+++||+.|+.+...
T Consensus 101 ~~~~~dfi~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~~~ 144 (537)
T KOG0274|consen 101 PLGQRDFLSLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLLDD 144 (537)
T ss_pred cccccchhhcccchhcccccccCC-HHHhhhhhhhcchhhhhhhc
Confidence 345678899999999999999999 99999999999999998754
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.10 E-value=0.45 Score=26.86 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=18.8
Q ss_pred CcccccccccccCCCHHHHHHHHhhc
Q 006794 599 KTLVGLNLQNCNSINSSTVARLVESL 624 (631)
Q Consensus 599 ~~L~~L~l~~c~~l~~~~~~~l~~~l 624 (631)
++|++|+|++ +.++++|...+.+.+
T Consensus 2 ~~L~~LdL~~-N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSN-NKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCC-CCCCHHHHHHHHHHh
Confidence 3578888887 678888888777765
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.56 E-value=0.58 Score=22.78 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=4.7
Q ss_pred cCCEEEecCCcc
Q 006794 548 FLSYLDVSKCAI 559 (631)
Q Consensus 548 ~L~~L~L~~~~l 559 (631)
+|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555544
No 84
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.34 E-value=0.21 Score=50.99 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=30.2
Q ss_pred ccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCH-HHHHHHHHhcCCCCeEeccCCC
Q 006794 332 QGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSD-NGLVAFSKAAGSLEILQLEECN 398 (631)
Q Consensus 332 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~ 398 (631)
..+.+|+.|++.++. +.. +......+++|+.|+++++ .+++ .++. .++.|+.|++.++.
T Consensus 92 ~~~~~l~~l~l~~n~-i~~--i~~~l~~~~~L~~L~ls~N-~I~~i~~l~----~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNK-IEK--IENLLSSLVNLQVLDLSFN-KITKLEGLS----TLTLLKELNLSGNL 151 (414)
T ss_pred ccccceeeeeccccc-hhh--cccchhhhhcchheecccc-ccccccchh----hccchhhheeccCc
Confidence 456777777776653 221 1121234577777777774 3322 2222 23446666666544
No 85
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=84.64 E-value=0.25 Score=50.46 Aligned_cols=168 Identities=23% Similarity=0.187 Sum_probs=72.2
Q ss_pred CCCcEEecccccCCCcccccccc-CCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhc
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPM-LSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESC 492 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 492 (631)
.+|+.|++.++. +..+ .. +..+++|++|+++++.-..-..+.. ++.|+.|++.++.--.-.++.. .
T Consensus 95 ~~l~~l~l~~n~-i~~i----~~~l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~N~i~~~~~~~~----l 161 (414)
T KOG0531|consen 95 KSLEALDLYDNK-IEKI----ENLLSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSGNLISDISGLES----L 161 (414)
T ss_pred cceeeeeccccc-hhhc----ccchhhhhcchheeccccccccccchhh----ccchhhheeccCcchhccCCcc----c
Confidence 667777776632 2222 11 3456777777777664222222222 2446666666632212222221 1
Q ss_pred ccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChh-hHHhhhhcc
Q 006794 493 KAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDM-GISALSHAE 571 (631)
Q Consensus 493 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~ 571 (631)
..|+.++++++ .+....... .. .+.+++.+.+.+ +.+....-.. .+..+..+++..|.++.. ++....
T Consensus 162 -~~L~~l~l~~n-~i~~ie~~~-~~-~~~~l~~l~l~~-n~i~~i~~~~---~~~~l~~~~l~~n~i~~~~~l~~~~--- 230 (414)
T KOG0531|consen 162 -KSLKLLDLSYN-RIVDIENDE-LS-ELISLEELDLGG-NSIREIEGLD---LLKKLVLLSLLDNKISKLEGLNELV--- 230 (414)
T ss_pred -hhhhcccCCcc-hhhhhhhhh-hh-hccchHHHhccC-CchhcccchH---HHHHHHHhhcccccceeccCcccch---
Confidence 15666666553 222222100 11 355666666666 3333211111 122233335555544331 111111
Q ss_pred CCCccEEeccCCCCCCcchHHHHHHhcCccccccccc
Q 006794 572 QLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQN 608 (631)
Q Consensus 572 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~ 608 (631)
+..|+.+.+++++ +.... ........+..|++..
T Consensus 231 ~~~L~~l~l~~n~-i~~~~--~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 231 MLHLRELYLSGNR-ISRSP--EGLENLKNLPVLDLSS 264 (414)
T ss_pred hHHHHHHhcccCc-ccccc--ccccccccccccchhh
Confidence 0026777777754 43211 1122344566666665
No 86
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=81.02 E-value=0.83 Score=35.41 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCCcCCCCHHHHHHHhccCCCcccchh
Q 006794 46 QPSIDVLPDECLYEIFRRLPSGKERSF 72 (631)
Q Consensus 46 ~~~i~~LP~eil~~If~~L~~~~d~~~ 72 (631)
.+.|..||.||..+|++||+ ..|+..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~-~~dL~~ 94 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLS-NKDLKK 94 (97)
T ss_pred CCchhhCCHHHHHHHHHcCC-HHHHHH
Confidence 47899999999999999999 877754
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.71 E-value=5.5 Score=40.79 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=22.0
Q ss_pred HhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCC
Q 006794 356 MGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEEC 397 (631)
Q Consensus 356 l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 397 (631)
.....|.+..+.|+++.-..-..+..+.+..|+|+.|+|+++
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred hhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 334455666666665433333444555555555666655554
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.95 E-value=5.6 Score=40.73 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=15.0
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDG 530 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~ 530 (631)
.+..+.|++..-..-.++..+.+ ..|+|..|+|++
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq-~apklk~L~LS~ 253 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQ-IAPKLKTLDLSH 253 (585)
T ss_pred ceeeeecccchhhchhhhhHHHH-hcchhheeeccc
Confidence 44444444422222233333443 445555555554
No 89
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=69.72 E-value=2.8 Score=21.93 Aligned_cols=13 Identities=46% Similarity=0.608 Sum_probs=7.6
Q ss_pred cCCEEEecCCccC
Q 006794 548 FLSYLDVSKCAIT 560 (631)
Q Consensus 548 ~L~~L~L~~~~l~ 560 (631)
+|+.|+|++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 3566666666555
No 90
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=62.59 E-value=12 Score=34.42 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=35.7
Q ss_pred ccCCCCCcCCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHH
Q 006794 42 EFENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMML 84 (631)
Q Consensus 42 ~~~~~~~i~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~ 84 (631)
|.+..-.+.+||.|+...|+..|++.+|+..+++|--.-+.+.
T Consensus 195 ~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~ 237 (332)
T KOG3926|consen 195 PDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLS 237 (332)
T ss_pred CCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHH
Confidence 3445678999999999999999998999999999876665554
No 91
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=59.01 E-value=2.9 Score=42.85 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=14.5
Q ss_pred CCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 549 LSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 549 L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
|.+|+++.|+|+...+.. .++..|++|-|.++|
T Consensus 213 Li~lDfScNkis~iPv~f---r~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPVDF---RKMRHLQVLQLENNP 245 (722)
T ss_pred eeeeecccCceeecchhh---hhhhhheeeeeccCC
Confidence 455555555544322211 133455555555544
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=58.39 E-value=8.3 Score=20.99 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=9.2
Q ss_pred CcCCEEEecCCccCh
Q 006794 547 MFLSYLDVSKCAITD 561 (631)
Q Consensus 547 ~~L~~L~L~~~~l~~ 561 (631)
++|+.|+|++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666665544
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=58.39 E-value=8.3 Score=20.99 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=9.2
Q ss_pred CcCCEEEecCCccCh
Q 006794 547 MFLSYLDVSKCAITD 561 (631)
Q Consensus 547 ~~L~~L~L~~~~l~~ 561 (631)
++|+.|+|++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666665544
No 94
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=55.38 E-value=17 Score=34.93 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=32.7
Q ss_pred CCcCCCCHHHHHHHhccCCCc-------ccchhhhhhhHHHHHHHh
Q 006794 47 PSIDVLPDECLYEIFRRLPSG-------KERSFAACVSKKWLMMLT 85 (631)
Q Consensus 47 ~~i~~LP~eil~~If~~L~~~-------~d~~~~~~Vcr~W~~~~~ 85 (631)
..|.+||+|.+..|....++. +..+.++-||+.|+++..
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~ 88 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISK 88 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcc
Confidence 578899999999999988733 345789999999999763
No 95
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=50.90 E-value=2.8 Score=42.95 Aligned_cols=108 Identities=23% Similarity=0.214 Sum_probs=67.0
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 574 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~ 574 (631)
.|+.|-+++ ++++..... +. ..++|..|+.+.| .+.... .-...+.+|+.|.+..|.+.+.. ..+. .-.
T Consensus 144 pLkvli~sN-Nkl~~lp~~-ig--~~~tl~~ld~s~n-ei~slp--sql~~l~slr~l~vrRn~l~~lp-~El~---~Lp 212 (722)
T KOG0532|consen 144 PLKVLIVSN-NKLTSLPEE-IG--LLPTLAHLDVSKN-EIQSLP--SQLGYLTSLRDLNVRRNHLEDLP-EELC---SLP 212 (722)
T ss_pred cceeEEEec-CccccCCcc-cc--cchhHHHhhhhhh-hhhhch--HHhhhHHHHHHHHHhhhhhhhCC-HHHh---CCc
Confidence 577887777 344432222 11 3578888888875 443221 11234778999999988866532 2333 336
Q ss_pred ccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCHHHH
Q 006794 575 LQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTV 617 (631)
Q Consensus 575 L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~ 617 (631)
|.+|+++. ++|+. ++.-......|++|.|.+ +.+.....
T Consensus 213 Li~lDfSc-Nkis~--iPv~fr~m~~Lq~l~Len-NPLqSPPA 251 (722)
T KOG0532|consen 213 LIRLDFSC-NKISY--LPVDFRKMRHLQVLQLEN-NPLQSPPA 251 (722)
T ss_pred eeeeeccc-Cceee--cchhhhhhhhheeeeecc-CCCCCChH
Confidence 88999987 66854 444345566799999998 55655433
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=48.72 E-value=15 Score=20.26 Aligned_cols=14 Identities=36% Similarity=0.332 Sum_probs=9.5
Q ss_pred CcCCEEEecCCccC
Q 006794 547 MFLSYLDVSKCAIT 560 (631)
Q Consensus 547 ~~L~~L~L~~~~l~ 560 (631)
.+|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777777777654
No 97
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=46.10 E-value=15 Score=20.21 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=8.3
Q ss_pred CceEeccCCCCCCHHHHHHHhh
Q 006794 443 LRSLSIRNCPGFGNASLAMLGK 464 (631)
Q Consensus 443 L~~L~l~~~~~~~~~~l~~l~~ 464 (631)
|++|++..+....+..+..+..
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS 23 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLS 23 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhc
Confidence 3444444433222333444433
No 98
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.49 E-value=19 Score=36.78 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=23.7
Q ss_pred CCCcCCCCHHHHHHHhccCCCcccchhh
Q 006794 46 QPSIDVLPDECLYEIFRRLPSGKERSFA 73 (631)
Q Consensus 46 ~~~i~~LP~eil~~If~~L~~~~d~~~~ 73 (631)
.+.|..||.||..+|++||+ ..|+...
T Consensus 384 ~~~w~~LP~Eik~~Il~~l~-~~dL~~~ 410 (413)
T PHA02875 384 ESKWNILPHEIKYLILEKIG-NKDIDIA 410 (413)
T ss_pred ccchhcCcHHHHHHHHHHhc-cchhhhh
Confidence 57799999999999999999 8887653
No 99
>PHA03100 ankyrin repeat protein; Provisional
Probab=33.76 E-value=23 Score=37.10 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=24.6
Q ss_pred CCCcCCCCHHHHHHHhccCCCcccchhhhh
Q 006794 46 QPSIDVLPDECLYEIFRRLPSGKERSFAAC 75 (631)
Q Consensus 46 ~~~i~~LP~eil~~If~~L~~~~d~~~~~~ 75 (631)
.+.|..||.||..+|++||+ ..|+.....
T Consensus 445 ~~~w~~lP~Eik~~Il~~l~-~~dl~~~~~ 473 (480)
T PHA03100 445 NTYWNILPIEIKYKILEYLS-NRDLKSLIE 473 (480)
T ss_pred CCchhhCcHHHHHHHHHhCC-HHHHHHHHh
Confidence 45799999999999999999 888875443
No 100
>PHA02878 ankyrin repeat protein; Provisional
Probab=29.26 E-value=28 Score=36.45 Aligned_cols=27 Identities=19% Similarity=0.005 Sum_probs=23.4
Q ss_pred CCCCcCCCCHHHHHHHhccCCCcccchh
Q 006794 45 NQPSIDVLPDECLYEIFRRLPSGKERSF 72 (631)
Q Consensus 45 ~~~~i~~LP~eil~~If~~L~~~~d~~~ 72 (631)
..+.|+.||.||..+|++||+ -.|+..
T Consensus 443 ~~~~w~~lP~Eik~~Il~~l~-~~dl~~ 469 (477)
T PHA02878 443 QNYMWNRLPLEIKHYIMELLD-DASLCN 469 (477)
T ss_pred ccCcHhhCCHHHHHHHHHHcC-cHHHHH
Confidence 346899999999999999999 888754
No 101
>PHA02989 ankyrin repeat protein; Provisional
Probab=29.16 E-value=24 Score=37.09 Aligned_cols=27 Identities=19% Similarity=0.026 Sum_probs=23.6
Q ss_pred CCCcCCCCHHHHHHHhccCCCcccchhh
Q 006794 46 QPSIDVLPDECLYEIFRRLPSGKERSFA 73 (631)
Q Consensus 46 ~~~i~~LP~eil~~If~~L~~~~d~~~~ 73 (631)
...|+.||.||..+|++||+ ..|+...
T Consensus 456 ~~~w~~LP~Eik~~Il~~L~-~~dl~~i 482 (494)
T PHA02989 456 KNYWMYLPIEIQINILEYLT-FSDFKTI 482 (494)
T ss_pred ccHHHhCCHHHHHHHHHcCC-HHHHHHH
Confidence 57899999999999999999 8887543
No 102
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=27.38 E-value=1.1e+02 Score=31.29 Aligned_cols=111 Identities=14% Similarity=-0.022 Sum_probs=52.2
Q ss_pred cccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhh--cCCCcCeEEcCCCCCCCHH-HHHHH
Q 006794 306 GKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGK--GCLNLKQMCLRKCCFVSDN-GLVAF 382 (631)
Q Consensus 306 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~-~l~~l 382 (631)
-+.+++++++.+.......+..... .++ +.+..|. ..+..+..+.. .-..+.+++++.+..-++. ....+
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p--~~p----l~lr~c~-lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~ 236 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQP--GNP----LSLRVCE-LSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNK 236 (553)
T ss_pred cchhhhhccCCCcccccCCccccCC--CCc----cchhhhh-hhhhHHHHhhhhhccccccccccccCCCCccchhHHHH
Confidence 3677888888774433333322221 112 4455554 44444444421 1134677788776544332 22222
Q ss_pred HHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEeccc
Q 006794 383 SKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVK 423 (631)
Q Consensus 383 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 423 (631)
...-.-++.++.+.-.--.+..+..++..+-.+++..+++.
T Consensus 237 ~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ 277 (553)
T KOG4242|consen 237 KAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSR 277 (553)
T ss_pred hhhhhhhhcccccccccchhhcccccccccccccchhhhcc
Confidence 22223455666554332233344444444445666665554
No 103
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=23.42 E-value=49 Score=18.32 Aligned_cols=13 Identities=38% Similarity=0.373 Sum_probs=7.4
Q ss_pred cCCEEEecCCccC
Q 006794 548 FLSYLDVSKCAIT 560 (631)
Q Consensus 548 ~L~~L~L~~~~l~ 560 (631)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4566666666544
No 104
>PHA02798 ankyrin-like protein; Provisional
Probab=23.30 E-value=42 Score=35.25 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=22.3
Q ss_pred CCCCcCCCCHHHHHHHhccCCCcccch
Q 006794 45 NQPSIDVLPDECLYEIFRRLPSGKERS 71 (631)
Q Consensus 45 ~~~~i~~LP~eil~~If~~L~~~~d~~ 71 (631)
....|+.||.||-.+|+++|+ -.|+.
T Consensus 460 ~~~~w~~lP~Eik~~Il~~L~-~~dl~ 485 (489)
T PHA02798 460 ELSYWNYIPNEIKFKIINNLS-NNDIL 485 (489)
T ss_pred CcchhhhCCHHHHHHHHHcCC-hHHHH
Confidence 347899999999999999999 76653
Done!