Query 006794
Match_columns 631
No_of_seqs 345 out of 2844
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 09:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 9.1E-42 3.1E-46 366.7 35.3 506 46-628 3-534 (594)
2 3ogk_B Coronatine-insensitive 100.0 2.8E-41 9.6E-46 362.6 32.2 501 50-626 14-539 (592)
3 2p1m_B Transport inhibitor res 100.0 6.9E-30 2.4E-34 274.2 36.3 411 145-607 102-539 (594)
4 3ogk_B Coronatine-insensitive 100.0 6.5E-29 2.2E-33 266.5 32.7 408 146-604 110-543 (592)
5 1z7x_W Ribonuclease inhibitor; 100.0 2.7E-26 9.2E-31 238.1 38.1 419 148-631 3-461 (461)
6 1z7x_W Ribonuclease inhibitor; 99.9 3.5E-25 1.2E-29 229.7 33.7 385 177-626 3-424 (461)
7 2ast_B S-phase kinase-associat 99.9 6.9E-26 2.4E-30 224.5 24.0 252 45-425 5-258 (336)
8 2z81_A CD282 antigen, TOLL-lik 99.9 3.7E-22 1.3E-26 211.7 9.6 438 147-624 49-523 (549)
9 3vq2_A TLR4, TOLL-like recepto 99.9 5E-23 1.7E-27 221.2 2.3 268 332-625 304-571 (606)
10 3t6q_A CD180 antigen; protein- 99.9 9.5E-23 3.3E-27 219.0 4.0 313 284-623 256-571 (606)
11 3rgz_A Protein brassinosteroid 99.9 3.1E-23 1.1E-27 227.7 -0.7 277 284-584 271-549 (768)
12 3t6q_A CD180 antigen; protein- 99.9 6.7E-23 2.3E-27 220.2 1.8 431 146-614 55-537 (606)
13 3rgz_A Protein brassinosteroid 99.8 1.1E-23 3.9E-28 231.2 -6.8 429 146-610 98-549 (768)
14 3vq2_A TLR4, TOLL-like recepto 99.8 4.7E-23 1.6E-27 221.4 -3.2 254 332-614 282-535 (606)
15 2z63_A TOLL-like receptor 4, v 99.8 6.6E-22 2.3E-26 211.0 -4.2 423 147-611 51-530 (570)
16 4fmz_A Internalin; leucine ric 99.8 7E-19 2.4E-23 174.8 18.0 303 227-610 42-344 (347)
17 2z7x_B TOLL-like receptor 1, v 99.8 3.2E-19 1.1E-23 187.6 16.1 427 148-620 21-489 (520)
18 1o6v_A Internalin A; bacterial 99.8 1.5E-18 5.1E-23 179.4 20.7 341 148-584 46-386 (466)
19 1o6v_A Internalin A; bacterial 99.8 1.2E-18 4.3E-23 180.0 20.0 342 176-610 45-386 (466)
20 2ast_B S-phase kinase-associat 99.8 1.6E-18 5.4E-23 171.4 19.0 167 438-614 139-307 (336)
21 4fmz_A Internalin; leucine ric 99.8 9.7E-18 3.3E-22 166.5 23.0 303 201-584 42-344 (347)
22 2z7x_B TOLL-like receptor 1, v 99.8 2.9E-19 1E-23 187.9 11.8 399 177-614 21-458 (520)
23 1ziw_A TOLL-like receptor 3; i 99.8 4.3E-20 1.5E-24 201.1 5.3 37 359-397 327-363 (680)
24 1ziw_A TOLL-like receptor 3; i 99.8 4.5E-20 1.5E-24 200.9 4.3 89 519-614 428-518 (680)
25 2z81_A CD282 antigen, TOLL-lik 99.8 5.5E-20 1.9E-24 195.0 4.1 403 147-587 73-511 (549)
26 3j0a_A TOLL-like receptor 5; m 99.8 1.5E-20 5.2E-25 208.6 -3.3 301 146-476 46-390 (844)
27 2z63_A TOLL-like receptor 4, v 99.8 1E-20 3.5E-25 201.7 -5.4 421 148-615 28-509 (570)
28 4ecn_A Leucine-rich repeat pro 99.8 3.1E-19 1.1E-23 194.5 5.6 325 254-610 490-838 (876)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.1E-18 3.7E-23 185.1 8.2 129 148-294 52-181 (562)
30 2ca6_A RAN GTPase-activating p 99.7 1.7E-16 6E-21 159.7 21.9 154 467-626 159-331 (386)
31 3v47_A TOLL-like receptor 5B a 99.7 2.2E-18 7.5E-23 178.1 7.9 366 148-584 30-406 (455)
32 4eco_A Uncharacterized protein 99.7 3.1E-19 1.1E-23 191.3 1.3 274 307-609 305-597 (636)
33 3v47_A TOLL-like receptor 5B a 99.7 1.9E-18 6.5E-23 178.6 6.8 364 177-613 30-409 (455)
34 2ca6_A RAN GTPase-activating p 99.7 9.9E-16 3.4E-20 154.2 26.3 43 520-563 273-319 (386)
35 3j0a_A TOLL-like receptor 5; m 99.7 1.1E-19 3.7E-24 201.7 -3.4 429 148-613 24-517 (844)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4E-18 1.4E-22 180.8 5.9 428 148-621 31-519 (562)
37 3bz5_A Internalin-J, INLJ; leu 99.7 1.2E-16 4.2E-21 163.5 13.6 202 148-424 42-243 (457)
38 4ecn_A Leucine-rich repeat pro 99.7 4.5E-17 1.5E-21 177.6 8.7 326 227-584 489-838 (876)
39 3o6n_A APL1; leucine-rich repe 99.7 7.3E-17 2.5E-21 162.8 8.3 313 176-591 44-356 (390)
40 4eco_A Uncharacterized protein 99.7 1.7E-17 5.9E-22 177.8 3.1 131 468-613 489-633 (636)
41 3bz5_A Internalin-J, INLJ; leu 99.6 4.7E-16 1.6E-20 159.2 12.6 326 146-587 62-387 (457)
42 4g8a_A TOLL-like receptor 4; l 99.6 4.2E-18 1.4E-22 184.3 -4.1 196 414-624 397-592 (635)
43 3o6n_A APL1; leucine-rich repe 99.6 5.3E-16 1.8E-20 156.5 9.1 316 148-568 45-360 (390)
44 3goz_A Leucine-rich repeat-con 99.6 1E-14 3.4E-19 145.2 16.0 247 334-589 21-299 (362)
45 3oja_B Anopheles plasmodium-re 99.6 1.1E-15 3.7E-20 162.9 8.5 315 176-593 50-364 (597)
46 2id5_A Lingo-1, leucine rich r 99.6 4.7E-16 1.6E-20 161.5 3.3 132 333-476 126-257 (477)
47 2id5_A Lingo-1, leucine rich r 99.6 2.5E-16 8.5E-21 163.6 0.4 240 333-594 102-341 (477)
48 3oja_B Anopheles plasmodium-re 99.6 4.1E-15 1.4E-19 158.4 9.2 316 148-568 51-366 (597)
49 3goz_A Leucine-rich repeat-con 99.5 7.2E-13 2.5E-17 131.8 20.9 227 333-566 48-303 (362)
50 4g8a_A TOLL-like receptor 4; l 99.5 2.4E-15 8.1E-20 162.6 1.8 217 360-593 370-587 (635)
51 1jl5_A Outer protein YOPM; leu 99.5 1.7E-14 5.7E-19 147.5 7.8 344 148-610 71-427 (454)
52 3e4g_A ATP synthase subunit S, 99.5 1.5E-14 5E-19 123.7 4.3 105 522-629 62-171 (176)
53 1jl5_A Outer protein YOPM; leu 99.5 1.7E-13 5.9E-18 140.0 12.4 374 148-614 11-410 (454)
54 3o53_A Protein LRIM1, AGAP0063 99.4 2.6E-14 8.9E-19 139.4 3.0 174 414-609 99-272 (317)
55 3un9_A NLR family member X1; l 99.4 4.1E-12 1.4E-16 125.7 16.8 196 413-615 71-285 (372)
56 2z66_A Variable lymphocyte rec 99.4 5.6E-15 1.9E-19 143.6 -5.3 231 335-585 28-260 (306)
57 1xku_A Decorin; proteoglycan, 99.4 9.5E-14 3.3E-18 136.4 2.3 133 467-609 192-329 (330)
58 2ft3_A Biglycan; proteoglycan, 99.4 3.3E-14 1.1E-18 139.9 -2.0 180 414-610 147-331 (332)
59 2z66_A Variable lymphocyte rec 99.4 6.9E-14 2.4E-18 135.9 -0.1 85 520-609 174-258 (306)
60 2z80_A TOLL-like receptor 2, v 99.3 2.6E-12 8.8E-17 127.5 10.9 137 414-585 174-313 (353)
61 2z80_A TOLL-like receptor 2, v 99.3 4E-13 1.4E-17 133.3 4.9 271 335-624 52-327 (353)
62 1xku_A Decorin; proteoglycan, 99.3 8.3E-13 2.9E-17 129.7 7.2 110 466-583 215-329 (330)
63 3e4g_A ATP synthase subunit S, 99.3 9.9E-13 3.4E-17 112.4 6.6 102 495-601 62-169 (176)
64 1ogq_A PGIP-2, polygalacturona 99.3 1.9E-14 6.5E-19 139.9 -4.9 255 335-613 50-305 (313)
65 3o53_A Protein LRIM1, AGAP0063 99.3 4.6E-13 1.6E-17 130.5 3.3 236 353-624 26-261 (317)
66 3un9_A NLR family member X1; l 99.3 5.3E-11 1.8E-15 117.8 18.0 193 361-589 72-285 (372)
67 3g06_A SSPH2 (leucine-rich rep 99.3 8E-12 2.7E-16 131.8 12.2 266 255-595 40-305 (622)
68 3g06_A SSPH2 (leucine-rich rep 99.3 8.2E-12 2.8E-16 131.7 10.7 266 229-568 40-305 (622)
69 3oja_A Leucine-rich immune mol 99.3 7.3E-13 2.5E-17 136.8 2.2 215 359-607 56-270 (487)
70 2ft3_A Biglycan; proteoglycan, 99.3 2.4E-13 8.3E-18 133.6 -1.4 247 335-610 54-305 (332)
71 1wwl_A Monocyte differentiatio 99.3 5.2E-13 1.8E-17 129.8 0.9 113 360-476 94-210 (312)
72 3zyj_A Leucine-rich repeat-con 99.3 8.9E-13 3.1E-17 135.0 2.3 139 438-589 157-295 (440)
73 1ozn_A Reticulon 4 receptor; N 99.3 1.9E-12 6.4E-17 124.3 3.8 206 361-585 32-237 (285)
74 3zyi_A Leucine-rich repeat-con 99.3 1.1E-12 3.9E-17 134.7 2.4 135 438-585 168-302 (452)
75 4fcg_A Uncharacterized protein 99.2 5.2E-13 1.8E-17 130.5 -0.5 107 360-476 103-215 (328)
76 3zyi_A Leucine-rich repeat-con 99.2 1.5E-12 5.3E-17 133.7 1.5 190 414-621 123-312 (452)
77 4glp_A Monocyte differentiatio 99.2 3.9E-12 1.3E-16 123.5 4.2 136 336-476 65-206 (310)
78 3zyj_A Leucine-rich repeat-con 99.2 1.3E-12 4.5E-17 133.7 0.9 192 414-623 112-303 (440)
79 3oja_A Leucine-rich immune mol 99.2 1.9E-12 6.4E-17 133.7 0.4 226 358-619 31-256 (487)
80 1h6u_A Internalin H; cell adhe 99.2 9.6E-11 3.3E-15 113.3 12.2 191 361-588 41-231 (308)
81 1ozn_A Reticulon 4 receptor; N 99.2 9.5E-12 3.2E-16 119.3 3.2 209 334-561 31-239 (285)
82 1h6u_A Internalin H; cell adhe 99.2 1.1E-10 3.8E-15 112.9 10.7 194 333-562 39-232 (308)
83 4fcg_A Uncharacterized protein 99.1 2.2E-12 7.7E-17 126.0 -2.1 223 360-608 80-310 (328)
84 1wwl_A Monocyte differentiatio 99.1 1.1E-10 3.6E-15 113.4 9.2 258 333-614 41-310 (312)
85 1ogq_A PGIP-2, polygalacturona 99.1 9.7E-13 3.3E-17 127.8 -5.5 231 361-613 50-281 (313)
86 4glp_A Monocyte differentiatio 99.1 1.7E-10 5.9E-15 111.9 8.3 37 229-266 64-102 (310)
87 3rfs_A Internalin B, repeat mo 99.1 5.6E-11 1.9E-15 112.8 3.9 61 520-584 156-216 (272)
88 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 1.1E-10 3.8E-15 78.6 3.7 40 45-85 5-44 (53)
89 2ra8_A Uncharacterized protein 99.0 4E-10 1.4E-14 110.4 9.1 159 461-628 166-336 (362)
90 1p9a_G Platelet glycoprotein I 99.0 4.7E-11 1.6E-15 114.3 1.0 201 359-586 8-208 (290)
91 4ezg_A Putative uncharacterize 99.0 3.1E-10 1E-14 101.9 5.9 54 414-476 44-97 (197)
92 3rfs_A Internalin B, repeat mo 99.0 1.5E-10 5.3E-15 109.8 2.3 107 495-610 110-216 (272)
93 4ezg_A Putative uncharacterize 98.9 1.3E-09 4.6E-14 97.7 8.0 58 385-452 42-99 (197)
94 1h6t_A Internalin B; cell adhe 98.9 2.7E-09 9.2E-14 102.1 10.5 169 361-561 46-214 (291)
95 2ra8_A Uncharacterized protein 98.9 1.6E-08 5.4E-13 99.0 15.5 157 413-582 171-339 (362)
96 1h6t_A Internalin B; cell adhe 98.9 3.7E-09 1.3E-13 101.2 10.9 168 385-584 44-211 (291)
97 2z62_A TOLL-like receptor 4, v 98.9 2.1E-10 7.1E-15 109.3 1.8 109 466-584 123-235 (276)
98 1io0_A Tropomodulin; LRR prote 98.9 1.6E-08 5.3E-13 89.3 13.6 125 457-583 26-161 (185)
99 2o6q_A Variable lymphocyte rec 98.9 3.8E-10 1.3E-14 107.0 2.9 180 387-584 37-216 (270)
100 2o6q_A Variable lymphocyte rec 98.9 1.4E-09 4.8E-14 103.0 5.4 182 361-560 37-218 (270)
101 1m9s_A Internalin B; cell inva 98.9 4.8E-09 1.6E-13 110.5 9.4 168 385-584 41-208 (605)
102 2xwt_C Thyrotropin receptor; s 98.8 1.3E-10 4.6E-15 108.0 -2.3 204 361-610 31-237 (239)
103 1io0_A Tropomodulin; LRR prote 98.8 5.9E-08 2E-12 85.6 14.9 128 485-616 28-167 (185)
104 2z62_A TOLL-like receptor 4, v 98.8 3.8E-10 1.3E-14 107.5 0.6 158 438-609 73-234 (276)
105 1m9s_A Internalin B; cell inva 98.8 6.4E-09 2.2E-13 109.6 9.7 175 360-566 42-216 (605)
106 2je0_A Acidic leucine-rich nuc 98.8 6.7E-09 2.3E-13 88.4 6.2 130 467-608 17-149 (149)
107 2ell_A Acidic leucine-rich nuc 98.8 3.8E-09 1.3E-13 92.0 4.0 132 467-610 24-158 (168)
108 3m19_A Variable lymphocyte rec 98.7 2.4E-09 8.2E-14 100.2 2.5 177 387-584 14-190 (251)
109 1p9a_G Platelet glycoprotein I 98.7 2.8E-09 9.6E-14 101.9 2.9 202 333-561 8-209 (290)
110 2je0_A Acidic leucine-rich nuc 98.7 7E-09 2.4E-13 88.2 4.8 130 413-582 16-149 (149)
111 2xwt_C Thyrotropin receptor; s 98.7 7.9E-10 2.7E-14 102.7 -1.6 202 335-584 31-237 (239)
112 1xeu_A Internalin C; cellular 98.7 1.4E-08 4.9E-13 95.4 5.7 147 385-560 39-185 (263)
113 3m19_A Variable lymphocyte rec 98.7 8E-09 2.7E-13 96.6 3.7 160 387-562 35-194 (251)
114 2ell_A Acidic leucine-rich nuc 98.6 6.4E-09 2.2E-13 90.6 1.1 63 519-584 93-158 (168)
115 2v70_A SLIT-2, SLIT homolog 2 98.5 2.4E-08 8.3E-13 91.0 0.8 143 440-593 31-173 (220)
116 1xeu_A Internalin C; cellular 98.5 1.4E-07 4.9E-12 88.5 6.1 16 546-561 149-164 (263)
117 2o6s_A Variable lymphocyte rec 98.5 1.4E-08 4.9E-13 91.9 -0.8 61 520-584 99-159 (208)
118 2xot_A Amphoterin-induced prot 98.4 4.6E-08 1.6E-12 96.8 2.1 58 414-476 39-97 (361)
119 3cvr_A Invasion plasmid antige 98.4 1.7E-07 5.8E-12 97.6 5.7 192 361-596 59-252 (571)
120 1dce_A Protein (RAB geranylger 98.4 1.8E-08 6.1E-13 105.5 -2.2 124 467-606 441-567 (567)
121 2v9t_B SLIT homolog 2 protein 98.4 1.1E-07 3.8E-12 86.6 3.1 92 495-593 81-172 (220)
122 4ay9_X Follicle-stimulating ho 98.4 4.2E-09 1.4E-13 103.9 -7.1 36 335-372 30-65 (350)
123 2v9t_B SLIT homolog 2 protein 98.4 4.3E-08 1.5E-12 89.4 0.2 121 495-624 57-177 (220)
124 1a9n_A U2A', U2A'; complex (nu 98.4 3E-07 1E-11 80.5 5.5 86 519-609 62-150 (176)
125 1a9n_A U2A', U2A'; complex (nu 98.4 1.9E-07 6.6E-12 81.7 3.9 85 495-584 65-151 (176)
126 2v70_A SLIT-2, SLIT homolog 2 98.4 7.5E-08 2.6E-12 87.7 1.1 136 414-561 32-167 (220)
127 1pgv_A TMD-1, tropomodulin TMD 98.3 1.2E-05 4.1E-10 70.0 13.2 125 456-582 30-166 (197)
128 3cvr_A Invasion plasmid antige 98.3 9.2E-07 3.1E-11 92.1 6.9 191 335-568 59-251 (571)
129 3e6j_A Variable lymphocyte rec 98.3 6.2E-07 2.1E-11 82.2 5.0 82 495-584 89-170 (229)
130 2o6s_A Variable lymphocyte rec 98.2 2.2E-07 7.4E-12 84.0 1.5 86 519-610 74-159 (208)
131 2xot_A Amphoterin-induced prot 98.2 1.7E-07 5.9E-12 92.7 0.6 170 440-619 38-209 (361)
132 1pgv_A TMD-1, tropomodulin TMD 98.2 1.7E-05 5.9E-10 69.0 12.0 124 483-608 31-166 (197)
133 2e31_A FBS1, F-box only protei 98.1 8.8E-07 3E-11 82.1 3.1 42 43-85 45-87 (297)
134 3e6j_A Variable lymphocyte rec 98.1 5.5E-07 1.9E-11 82.6 1.1 85 519-610 86-170 (229)
135 3sb4_A Hypothetical leucine ri 98.1 1.7E-06 5.8E-11 84.3 4.2 123 468-604 203-326 (329)
136 2wfh_A SLIT homolog 2 protein 98.1 3.9E-07 1.3E-11 80.9 -0.7 116 467-593 31-146 (193)
137 3l2o_B F-box only protein 4; s 98.1 8.4E-07 2.9E-11 80.9 1.3 37 48-85 4-40 (312)
138 1w8a_A SLIT protein; signaling 98.0 2.6E-07 9E-12 82.1 -2.7 128 444-585 11-138 (192)
139 2wfh_A SLIT homolog 2 protein 98.0 2.8E-06 9.7E-11 75.3 3.7 110 440-560 30-139 (193)
140 1w8a_A SLIT protein; signaling 98.0 1.8E-06 6.2E-11 76.6 2.2 130 417-561 11-140 (192)
141 1ds9_A Outer arm dynein; leuci 98.0 1.6E-06 5.4E-11 77.5 1.4 39 520-559 114-152 (198)
142 3sb4_A Hypothetical leucine ri 98.0 5.7E-06 1.9E-10 80.6 5.4 80 360-450 201-283 (329)
143 2o6r_A Variable lymphocyte rec 97.9 1.3E-06 4.5E-11 76.5 0.3 127 443-584 9-135 (177)
144 1ds9_A Outer arm dynein; leuci 97.9 3.5E-06 1.2E-10 75.2 1.8 125 465-605 46-180 (198)
145 4ay9_X Follicle-stimulating ho 97.9 3.8E-07 1.3E-11 89.8 -5.1 207 387-613 30-237 (350)
146 2o6r_A Variable lymphocyte rec 97.7 9.1E-06 3.1E-10 71.0 2.3 112 440-561 27-138 (177)
147 1dce_A Protein (RAB geranylger 97.7 2.2E-05 7.7E-10 82.0 4.3 78 495-580 487-567 (567)
148 4b8c_D Glucose-repressible alc 97.6 1.5E-05 5E-10 86.3 1.1 12 598-609 358-369 (727)
149 3v7d_B Cell division control p 97.5 1.7E-05 5.7E-10 81.5 1.2 44 42-86 8-51 (464)
150 3g39_A Variable lymphocyte rec 97.4 2.3E-05 7.9E-10 67.8 0.1 104 468-584 10-113 (170)
151 2ovr_B FBW7, F-BOX/WD repeat p 97.4 6.5E-05 2.2E-09 76.6 3.1 43 42-85 12-54 (445)
152 3g39_A Variable lymphocyte rec 97.4 2.5E-05 8.7E-10 67.5 -0.2 107 442-561 10-116 (170)
153 1p22_A F-BOX/WD-repeat protein 97.3 4.1E-05 1.4E-09 77.9 0.9 42 43-85 5-50 (435)
154 3rw6_A Nuclear RNA export fact 97.3 0.00051 1.7E-08 63.4 7.5 84 519-607 168-259 (267)
155 2r9u_A Variable lymphocyte rec 97.2 7.1E-05 2.4E-09 64.9 1.2 61 520-584 56-116 (174)
156 4b8c_D Glucose-repressible alc 97.2 8.7E-05 3E-09 80.2 1.4 130 464-608 221-350 (727)
157 2r9u_A Variable lymphocyte rec 97.1 0.00011 3.8E-09 63.7 1.3 86 521-613 33-118 (174)
158 4fs7_A Uncharacterized protein 97.1 1.9E-05 6.6E-10 79.0 -4.5 58 519-582 318-375 (394)
159 2ifg_A High affinity nerve gro 96.6 0.00048 1.6E-08 67.4 1.0 94 495-595 32-125 (347)
160 2ifg_A High affinity nerve gro 96.4 0.001 3.4E-08 65.1 2.1 89 465-561 29-117 (347)
161 3rw6_A Nuclear RNA export fact 96.1 0.01 3.6E-07 54.6 7.3 58 520-581 195-259 (267)
162 4fdw_A Leucine rich hypothetic 96.0 0.00081 2.8E-08 66.9 -1.1 189 362-584 158-356 (401)
163 4fdw_A Leucine rich hypothetic 95.5 0.0023 7.8E-08 63.6 0.0 197 357-582 176-379 (401)
164 4fs7_A Uncharacterized protein 95.5 0.003 1E-07 62.9 0.7 81 519-608 295-375 (394)
165 3rfe_A Platelet glycoprotein I 79.9 2 6.7E-05 34.4 4.4 35 548-584 32-66 (130)
166 4h09_A Hypothetical leucine ri 73.5 0.8 2.7E-05 44.8 0.5 128 438-582 214-342 (379)
167 4gt6_A Cell surface protein; l 71.3 1.3 4.6E-05 43.5 1.5 35 545-582 332-366 (394)
168 4gt6_A Cell surface protein; l 68.8 0.92 3.1E-05 44.7 -0.3 81 519-608 286-366 (394)
169 3rfe_A Platelet glycoprotein I 58.6 3.3 0.00011 33.0 1.3 37 522-560 32-68 (130)
170 4h09_A Hypothetical leucine ri 57.1 2.2 7.6E-05 41.6 -0.0 107 437-557 236-343 (379)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=9.1e-42 Score=366.70 Aligned_cols=506 Identities=19% Similarity=0.236 Sum_probs=303.8
Q ss_pred CCCcCCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHHhhhhhhhhccchhhHHHhhhcccccccccccCCCCCCccce
Q 006794 46 QPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTR 125 (631)
Q Consensus 46 ~~~i~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 125 (631)
.+.|+.||+||+.+||+||+..+|++++++|||+|+++. .+.+..+... .+
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~-~~~~~~l~~~------------~~---------------- 53 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE-RWCRRKVFIG------------NC---------------- 53 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH-HHHCCEEEES------------ST----------------
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh-hhhceEEeec------------cc----------------
Confidence 478999999999999999997899999999999999983 2221111110 00
Q ss_pred eccCCCccchhhHHHhhcccCCCCcceeEeeCccccC----------ccChhhHHHHHhcCCCCCeEeecCCCCCChhhH
Q 006794 126 CLDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTH----------GVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGL 195 (631)
Q Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~l~~L~l~~~~~~~----------~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 195 (631)
...... .....++++++|+++++.... .....++..+...+++|++|+++++ .+++..+
T Consensus 54 ----~~~~~~------~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~ 122 (594)
T 2p1m_B 54 ----YAVSPA------TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCL 122 (594)
T ss_dssp ----TSSCHH------HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHH
T ss_pred ----cccCHH------HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHH
Confidence 000000 011234678888888754221 1123345666677888888888887 4777777
Q ss_pred HHHHHhCCCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCCh---hHHHHHhhcCCCCcEEEccCCC-Ccchh
Q 006794 196 LEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGN---DGLQAIGKFCRNLQCLSIKDCP-LVRDQ 271 (631)
Q Consensus 196 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~---~~~~~l~~~~~~L~~L~l~~~~-~~~~~ 271 (631)
..+...+++|++|++.+|..+++.++..+..++++|++|++++|. +++ ..+..+...+++|++|+++++. .+...
T Consensus 123 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 201 (594)
T 2p1m_B 123 ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFS 201 (594)
T ss_dssp HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHH
T ss_pred HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHH
Confidence 777767888888888887677777788887788888888888764 333 3344445457888888888775 45556
Q ss_pred hHHHHHhhhhhcccceeccccccchhhHHHHhhccccccccccCCCCC-CchhhHHHh-hccccCCCcceE-eccCCCCC
Q 006794 272 GISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPN-VSEKGFWVM-GNAQGLQKLVSL-TIASGGGV 348 (631)
Q Consensus 272 ~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~-~~~~~~~~L~~L-~l~~~~~~ 348 (631)
.+..+...++. |+.|++.++.. ...+..+...+++|+.|++..+.. +....+..+ ..+..+++|+.| .+.+ .
T Consensus 202 ~l~~l~~~~~~-L~~L~L~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~---~ 276 (594)
T 2p1m_B 202 ALERLVTRCPN-LKSLKLNRAVP-LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD---A 276 (594)
T ss_dssp HHHHHHHHCTT-CCEEECCTTSC-HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBT---C
T ss_pred HHHHHHHhCCC-CcEEecCCCCc-HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcc---c
Confidence 66666555544 77777776521 112445555667777777665432 222222111 123455666666 2222 2
Q ss_pred ChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCC
Q 006794 349 TDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIK 428 (631)
Q Consensus 349 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (631)
....+..+...+++|++|++++|. +++.++..+...+++|++|++.+| +++.++...... +++|++|++.+|....
T Consensus 277 ~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~-~~~L~~L~L~~~~~~g 352 (594)
T 2p1m_B 277 VPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLAST-CKDLRELRVFPSEPFV 352 (594)
T ss_dssp CGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHH-CTTCCEEEEECSCTTC
T ss_pred chhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHh-CCCCCEEEEecCcccc
Confidence 233333333345677777777664 666666666666677777777665 344443333222 2556666654431000
Q ss_pred ccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecC-----C
Q 006794 429 DMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLS-----G 503 (631)
Q Consensus 429 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~-----~ 503 (631)
..+|..+++..+..+...+++|+.|.+ +|+.+++.++..+...++ +|++|+++ +
T Consensus 353 -------------------~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~-~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 353 -------------------MEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRP-NMTRFRLCIIEPKA 411 (594)
T ss_dssp -------------------SSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCT-TCCEEEEEESSTTC
T ss_pred -------------------cccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCC-CcceeEeecccCCC
Confidence 023344566666666666677777744 346666666666655555 67777776 5
Q ss_pred CCCCc----hHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEe
Q 006794 504 CLNLT----DEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLS 579 (631)
Q Consensus 504 c~~l~----~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~ 579 (631)
|+.++ +.++..+.. .+++|+.|++++ .+++.++..+...+++|+.|+|++|.+++.++..+. ..+++|++|+
T Consensus 412 ~~~l~~~~~~~~~~~l~~-~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~-~~~~~L~~L~ 487 (594)
T 2p1m_B 412 PDYLTLEPLDIGFGAIVE-HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL-SGCDSLRKLE 487 (594)
T ss_dssp CCTTTCCCTHHHHHHHHH-HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHH-HHCTTCCEEE
T ss_pred cccccCCchhhHHHHHHh-hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHH-hcCCCcCEEE
Confidence 56666 555555554 566777777754 666666666665667777777777777666666654 3566777777
Q ss_pred ccCCCCCCcchHHHHHHhcCcccccccccccCCCHHHHHHHHhhccccc
Q 006794 580 LSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWRCD 628 (631)
Q Consensus 580 l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~l~~~l~~~~ 628 (631)
+++|+ +++..+..+...+++|+.|++++|+ ++..+++.+.+.+|.+.
T Consensus 488 L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 488 IRDCP-FGDKALLANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKLN 534 (594)
T ss_dssp EESCS-CCHHHHHHTGGGGGGSSEEEEESSC-CBHHHHHHHHHHCTTEE
T ss_pred CcCCC-CcHHHHHHHHHhCCCCCEEeeeCCC-CCHHHHHHHHHhCCCCE
Confidence 77765 4555555555556667777777764 36667776666665553
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=2.8e-41 Score=362.59 Aligned_cols=501 Identities=17% Similarity=0.198 Sum_probs=297.6
Q ss_pred CCCCHHHHHHHhccC-CCcccchhhhhhhHHHHHHHhhhhhhhhccchhhHHHhhhcccccccccccCCCCCCccceecc
Q 006794 50 DVLPDECLYEIFRRL-PSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTRCLD 128 (631)
Q Consensus 50 ~~LP~eil~~If~~L-~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 128 (631)
.+||+|||.+||+|| + .+|++++++|||+|+.+....+ ..+... ..+.
T Consensus 14 ~~LPdeil~~I~~~L~~-~~d~~~~s~vck~W~~~~~~~~-~~l~~~-----------------------------~~~~ 62 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITD-PKDRDSASLVCRRWFKIDSETR-EHVTMA-----------------------------LCYT 62 (592)
T ss_dssp CCCGGGTHHHHHTTCCC-HHHHHHHTTSCHHHHHHHHHHC-CEEEES-----------------------------CGGG
T ss_pred CCCCHHHHHHHHHhcCC-HHHHHHHHHHhHHHHHhhhccc-cEEEEe-----------------------------eccc
Confidence 489999999999999 7 9999999999999999852211 111100 0000
Q ss_pred CCCccchhhHHHhhcccCCCCcceeEeeCccc----------cCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHH
Q 006794 129 GKKATDLRLAAIAVGTSGHGGLGKLSIRGNKY----------THGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEI 198 (631)
Q Consensus 129 ~~~~~~~~l~~~~~~~~~~~~l~~L~l~~~~~----------~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 198 (631)
. ... .....++++++|+++++.. .......++..+...+++|++|+++++ .+++..+..+
T Consensus 63 ~------~~~---~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l 132 (592)
T 3ogk_B 63 A------TPD---RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRL 132 (592)
T ss_dssp S------CHH---HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHH
T ss_pred c------ChH---HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHH
Confidence 0 000 1112346789999977531 123344567777778999999999987 6787777777
Q ss_pred HHhCCC-CCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCCh---hHHHHHhhcCCCCcEEEccCCCC--cchhh
Q 006794 199 AKECHL-LEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGN---DGLQAIGKFCRNLQCLSIKDCPL--VRDQG 272 (631)
Q Consensus 199 ~~~~~~-L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~---~~~~~l~~~~~~L~~L~l~~~~~--~~~~~ 272 (631)
...+++ |++|++++|..+++..+..+...+++|++|++++|. +++ ..+..+...+++|++|+++++.. +....
T Consensus 133 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~ 211 (592)
T 3ogk_B 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD 211 (592)
T ss_dssp HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH
T ss_pred HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH
Confidence 666666 999999988767777888888889999999999863 333 23666666799999999987653 24566
Q ss_pred HHHHHhhhhhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHH
Q 006794 273 ISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVS 352 (631)
Q Consensus 273 ~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 352 (631)
+..+...++. |+.|++.++.+.+. ......+++|++|+++....... ..........+++|+.|.+.+.. ...
T Consensus 212 l~~~~~~~~~-L~~L~L~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~~~~L~~L~l~~~~---~~~ 284 (592)
T 3ogk_B 212 LETIARNCRS-LVSVKVGDFEILEL--VGFFKAAANLEEFCGGSLNEDIG-MPEKYMNLVFPRKLCRLGLSYMG---PNE 284 (592)
T ss_dssp HHHHHHHCTT-CCEEECSSCBGGGG--HHHHHHCTTCCEEEECBCCCCTT-CTTSSSCCCCCTTCCEEEETTCC---TTT
T ss_pred HHHHHhhCCC-CcEEeccCccHHHH--HHHHhhhhHHHhhcccccccccc-hHHHHHHhhccccccccCccccc---hhH
Confidence 6667666666 99999988777653 34455568899998875422111 01112334566788888887642 233
Q ss_pred HHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCcccc
Q 006794 353 LEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMAT 432 (631)
Q Consensus 353 ~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 432 (631)
+..+...+++|++|++++|. +++..+..+...+++|+.|++.+ .+.+.++...... +++|++|++++... ...
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~-~~~L~~L~L~~g~~-~~~-- 357 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQY-CKQLKRLRIERGAD-EQG-- 357 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHH-CTTCCEEEEECCCC-SST--
T ss_pred HHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHh-CCCCCEEEeecCcc-ccc--
Confidence 44555667899999999875 77877777777889999998883 3455555444333 36666666663000 000
Q ss_pred ccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecC---CCCCCch
Q 006794 433 EMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLS---GCLNLTD 509 (631)
Q Consensus 433 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~---~c~~l~~ 509 (631)
.-..|..+++..+..+...+++|+.|++ .|..+++.++..+...++ +|++|+++ .|+.+++
T Consensus 358 --------------~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~-~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 358 --------------MEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLK-NLCDFRLVLLDREERITD 421 (592)
T ss_dssp --------------TSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCC-SCCEEEEEECSCCSCCSS
T ss_pred --------------cccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCC-CCcEEEEeecCCCccccC
Confidence 0000333444444444444455555555 224444444444444443 45555554 2334443
Q ss_pred ----HHHHHHHhhcCcccCeecccCCC-CCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 510 ----EVVLALARLHSETLELLNLDGCR-KITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 510 ----~~~~~l~~~~~~~L~~L~l~~c~-~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
.++..+.. .+++|++|+++.|. .+++.++..+...+++|+.|+|++|++++.++..+. ..+++|++|++++|+
T Consensus 422 ~p~~~~~~~~~~-~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 422 LPLDNGVRSLLI-GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS-RGCPNLQKLEMRGCC 499 (592)
T ss_dssp CCCHHHHHHHHH-HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH-TCCTTCCEEEEESCC
T ss_pred chHHHHHHHHHH-hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH-hcCcccCeeeccCCC
Confidence 23333333 34555555554432 244444444444455555555555555554444443 344555555555544
Q ss_pred CCCcchHHHHHHhcCcccccccccccCCCHHHHHHHHhhccc
Q 006794 585 EVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWR 626 (631)
Q Consensus 585 ~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~l~~~l~~ 626 (631)
+++.++..+...+++|++|++++|. +++.|++.+.+.+|.
T Consensus 500 -l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~ 539 (592)
T 3ogk_B 500 -FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPY 539 (592)
T ss_dssp -CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTT
T ss_pred -CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCC
Confidence 4444444444444455555555543 555555444444443
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.98 E-value=6.9e-30 Score=274.21 Aligned_cols=411 Identities=22% Similarity=0.292 Sum_probs=308.6
Q ss_pred cCCCCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCCh---HHH
Q 006794 145 SGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISN---ESL 221 (631)
Q Consensus 145 ~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~---~~l 221 (631)
..+++|++|+++++ .+.+..+..+...+++|++|++.+|..+++.++..+...+++|++|++++|. +++ ..+
T Consensus 102 ~~~~~L~~L~L~~~----~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l 176 (594)
T 2p1m_B 102 SSYTWLEEIRLKRM----VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWL 176 (594)
T ss_dssp HHCTTCCEEEEESC----BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGG
T ss_pred HhCCCCCeEEeeCc----EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHH
Confidence 34579999999998 6888888888878999999999998778888888888899999999999864 332 234
Q ss_pred HHHHhhCCCCcEEeecCCC-CCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccc--cchhh
Q 006794 222 IAIAENCPNLTSLNIESCS-KIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALN--ITDFS 298 (631)
Q Consensus 222 ~~l~~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~--l~~~~ 298 (631)
..+...+++|++|+++++. .++...+..+...+++|++|++++|.... ++..+...++. |+.|.+..+. +....
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~--~l~~~~~~~~~-L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE--KLATLLQRAPQ-LEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH--HHHHHHHHCTT-CSEEECSBCCCCCCHHH
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH--HHHHHHhcCCc-ceEcccccccCccchhh
Confidence 4455578899999999875 56778888887779999999999985443 36666666655 8888876543 22222
Q ss_pred HH---HHhhcccccccc-ccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCC
Q 006794 299 LA---VIGHYGKALTNL-VLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFV 374 (631)
Q Consensus 299 ~~---~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 374 (631)
+. .....|++|+.| .+.. .....+... ...+++|++|+++++. +.+..+..+...+++|++|++.++ +
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~---~~~~~l~~~--~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~ 325 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWD---AVPAYLPAV--YSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--I 325 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBT---CCGGGGGGG--HHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--G
T ss_pred HHHHHHHHhcCCCcccccCCcc---cchhhHHHH--HHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--c
Confidence 22 223567888877 3332 222222211 1256899999999998 888888888888999999999987 6
Q ss_pred CHHHHHHHHHhcCCCCeEecc--------CCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceE
Q 006794 375 SDNGLVAFSKAAGSLEILQLE--------ECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSL 446 (631)
Q Consensus 375 ~~~~l~~l~~~~~~L~~L~l~--------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 446 (631)
.+.++..+...+++|++|++. .|..+++.++..+... +++|++|
T Consensus 326 ~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~----------------------------~~~L~~L 377 (594)
T 2p1m_B 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG----------------------------CPKLESV 377 (594)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH----------------------------CTTCCEE
T ss_pred CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh----------------------------chhHHHH
Confidence 778888888889999999994 4556666666554322 3444444
Q ss_pred eccCCCCCCHHHHHHHhhcCCCCcEEecc-----cccCCC----chhhHHHHhhcccCccEEecCCCCCCchHHHHHHHh
Q 006794 447 SIRNCPGFGNASLAMLGKLCPQLQHVDLS-----GLYGIT----DVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALAR 517 (631)
Q Consensus 447 ~l~~~~~~~~~~l~~l~~~~~~L~~L~l~-----~~~~l~----~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 517 (631)
.+ +|..+++..+..++..+|+|+.|+++ +|+.++ +.++..++..++ +|++|++++ .+++.++..+..
T Consensus 378 ~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~L~~L~L~~--~l~~~~~~~l~~ 453 (594)
T 2p1m_B 378 LY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK-DLRRLSLSG--LLTDKVFEYIGT 453 (594)
T ss_dssp EE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT-TCCEEECCS--SCCHHHHHHHHH
T ss_pred HH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC-CccEEeecC--cccHHHHHHHHH
Confidence 32 23346777777777778889999888 567777 677777777777 899999966 788888887776
Q ss_pred hcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHh
Q 006794 518 LHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKL 597 (631)
Q Consensus 518 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 597 (631)
.+++|+.|++++| .+++.++..+...+++|+.|+|++|.+++.++..+. ..+++|+.|++++|+ +++.++..+...
T Consensus 454 -~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~~l~~~ 529 (594)
T 2p1m_B 454 -YAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA-SKLETMRSLWMSSCS-VSFGACKLLGQK 529 (594)
T ss_dssp -HCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG-GGGGGSSEEEEESSC-CBHHHHHHHHHH
T ss_pred -hchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH-HhCCCCCEEeeeCCC-CCHHHHHHHHHh
Confidence 6888999999885 688888888877789999999999988887777666 568889999999987 577777777666
Q ss_pred cCcccccccc
Q 006794 598 GKTLVGLNLQ 607 (631)
Q Consensus 598 ~~~L~~L~l~ 607 (631)
.|+|+...+.
T Consensus 530 lp~l~i~~~~ 539 (594)
T 2p1m_B 530 MPKLNVEVID 539 (594)
T ss_dssp CTTEEEEEEC
T ss_pred CCCCEEEEec
Confidence 6767544443
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=6.5e-29 Score=266.47 Aligned_cols=408 Identities=20% Similarity=0.236 Sum_probs=282.6
Q ss_pred CCCCcceeEeeCccccCccChhhHHHHHhcCCC-CCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCC---hHHH
Q 006794 146 GHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPS-LKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSIS---NESL 221 (631)
Q Consensus 146 ~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---~~~l 221 (631)
.+++|++|+++++ .+.+.....+...++. |++|++.+|..+.+.++..+...+++|++|++++| .++ ...+
T Consensus 110 ~~~~L~~L~L~~~----~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l 184 (592)
T 3ogk_B 110 NLRQLKSVHFRRM----IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKWL 184 (592)
T ss_dssp HCTTCCEEEEESC----BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHHH
T ss_pred hCCCCCeEEeecc----EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcchhHH
Confidence 4589999999988 6888888888776776 99999999876777788888889999999999986 332 2336
Q ss_pred HHHHhhCCCCcEEeecCCCC--CChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchh--
Q 006794 222 IAIAENCPNLTSLNIESCSK--IGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDF-- 297 (631)
Q Consensus 222 ~~l~~~l~~L~~L~l~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~-- 297 (631)
..+...+++|++|+++++.. +....+..+...+++|++|++++|... ++.......+. |+.|.+........
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~---~l~~~~~~~~~-L~~L~l~~~~~~~~~~ 260 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL---ELVGFFKAAAN-LEEFCGGSLNEDIGMP 260 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG---GGHHHHHHCTT-CCEEEECBCCCCTTCT
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH---HHHHHHhhhhH-HHhhcccccccccchH
Confidence 67778899999999987532 345677777777999999999996532 23445555544 88888875322211
Q ss_pred hHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHH
Q 006794 298 SLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDN 377 (631)
Q Consensus 298 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 377 (631)
........+++|+.|++..... ..+. .....+++|++|++++|. +.+..+..+...+++|++|++.+ .+.+.
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~~~---~~l~--~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~ 332 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYMGP---NEMP--ILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDR 332 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTCCT---TTGG--GGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHH
T ss_pred HHHHHhhccccccccCccccch---hHHH--HHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHH
Confidence 1111123457888887776421 1111 122457899999999988 88888877778899999999984 57788
Q ss_pred HHHHHHHhcCCCCeEeccC----------CCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEe
Q 006794 378 GLVAFSKAAGSLEILQLEE----------CNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLS 447 (631)
Q Consensus 378 ~l~~l~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 447 (631)
++..+...+++|++|++++ |..+++.++......+ ++|++|+++
T Consensus 333 ~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l~------------------------- 386 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC-QELEYMAVY------------------------- 386 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC-TTCSEEEEE-------------------------
T ss_pred HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC-ccCeEEEee-------------------------
Confidence 8888889999999999995 7888887776553333 555555552
Q ss_pred ccCCCCCCHHHHHHHhhcCCCCcEEeccc---ccCCCc----hhhHHHHhhcccCccEEecCCCC-CCchHHHHHHHhhc
Q 006794 448 IRNCPGFGNASLAMLGKLCPQLQHVDLSG---LYGITD----VGIFPLLESCKAGLVKVNLSGCL-NLTDEVVLALARLH 519 (631)
Q Consensus 448 l~~~~~~~~~~l~~l~~~~~~L~~L~l~~---~~~l~~----~~~~~l~~~~~~~L~~L~l~~c~-~l~~~~~~~l~~~~ 519 (631)
|..+++..+..++..+++|++|++++ ++.+++ +++..++..++ +|++|++++|. .+++..+..+.. .
T Consensus 387 ---~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~~~~~-~ 461 (592)
T 3ogk_B 387 ---VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLSYIGQ-Y 461 (592)
T ss_dssp ---ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT-TCCEEEEECCGGGCCHHHHHHHHH-S
T ss_pred ---cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC-CCCEEEEecCCCCccHHHHHHHHH-h
Confidence 23455666666666667777777753 345554 35555666665 67777776554 366666666655 5
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcC
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGK 599 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 599 (631)
+++|+.|++++| .+++.++..+...|++|+.|+|++|.+++.++..+. ..+++|++|++++|. +++.++..+...+|
T Consensus 462 ~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~ls~n~-it~~~~~~l~~~~p 538 (592)
T 3ogk_B 462 SPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV-TKLPSLRYLWVQGYR-ASMTGQDLMQMARP 538 (592)
T ss_dssp CTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH-HHCSSCCEEEEESCB-CCTTCTTGGGGCCT
T ss_pred CccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH-HhcCccCeeECcCCc-CCHHHHHHHHHhCC
Confidence 667777777663 566666666666677777777777777666665554 456677777777765 66666655555555
Q ss_pred ccccc
Q 006794 600 TLVGL 604 (631)
Q Consensus 600 ~L~~L 604 (631)
.+...
T Consensus 539 ~l~~~ 543 (592)
T 3ogk_B 539 YWNIE 543 (592)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 44433
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.7e-26 Score=238.12 Aligned_cols=419 Identities=17% Similarity=0.251 Sum_probs=261.4
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhh---HHHHHHhCCCCCEeeccCCCCCChHHHHHH
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEG---LLEIAKECHLLEKLELCHCPSISNESLIAI 224 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l 224 (631)
+.+++|+++++ .+.+..+..+...+++|++|++++| .+++.+ +......+++|++|++++ ..+++..+..+
T Consensus 3 ~~l~~L~Ls~~----~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQCE----ELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRS-NELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEESC----CCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTT-CCCHHHHHHHH
T ss_pred ccceehhhhhc----ccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCC-CcCChHHHHHH
Confidence 46788899877 5777777776777889999999887 476654 334455678999999988 46777777777
Q ss_pred HhhCC----CCcEEeecCCCCCChhH---HHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhh---cccceecccccc
Q 006794 225 AENCP----NLTSLNIESCSKIGNDG---LQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASS---VLTRVKLQALNI 294 (631)
Q Consensus 225 ~~~l~----~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~---~L~~L~l~~~~l 294 (631)
...++ +|++|++++| .+++.+ +......+++|++|+++++. +.+.+...+...... +|+.|+++++.+
T Consensus 77 ~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp HHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 77776 6999999875 466533 33333447888888888876 555555554443211 245555554444
Q ss_pred chhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhh----cCCCcCeEEcCC
Q 006794 295 TDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGK----GCLNLKQMCLRK 370 (631)
Q Consensus 295 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~ 370 (631)
++.....+.. .+..+++|++|+++++. +.+.+...+.. ..++|++|++++
T Consensus 155 ~~~~~~~l~~-------------------------~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 155 SAASCEPLAS-------------------------VLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp BGGGHHHHHH-------------------------HHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred CHHHHHHHHH-------------------------HHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccC
Confidence 4433222211 11223555666666554 44444433332 234666777666
Q ss_pred CCCCCHHH---HHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEe
Q 006794 371 CCFVSDNG---LVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLS 447 (631)
Q Consensus 371 ~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 447 (631)
| .+++.+ +......+++|++|++++|. +++.+...+... ....+++|++|+
T Consensus 209 n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~------------------------~~~~~~~L~~L~ 262 (461)
T 1z7x_W 209 C-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPG------------------------LLHPSSRLRTLW 262 (461)
T ss_dssp S-CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHH------------------------HTSTTCCCCEEE
T ss_pred C-CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHH------------------------HhcCCCCceEEE
Confidence 5 344332 33333456666666666653 444443322111 012356667777
Q ss_pred ccCCCCCCHHHHHH---HhhcCCCCcEEecccccCCCchhhHHHHhhcc---cCccEEecCCCCCCchHHHHHHHhh--c
Q 006794 448 IRNCPGFGNASLAM---LGKLCPQLQHVDLSGLYGITDVGIFPLLESCK---AGLVKVNLSGCLNLTDEVVLALARL--H 519 (631)
Q Consensus 448 l~~~~~~~~~~l~~---l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~---~~L~~L~l~~c~~l~~~~~~~l~~~--~ 519 (631)
+++| .+++..... ....+++|++|++++ +.+++.+...+..... ++|++|++++| .+++.+...+... .
T Consensus 263 L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 263 IWEC-GITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQ 339 (461)
T ss_dssp CTTS-CCCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHH
T ss_pred CcCC-CCCHHHHHHHHHHHhhCCCcceEECCC-CCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhh
Confidence 7766 355554332 233468888888887 4677766666555422 48888888886 5665543333221 4
Q ss_pred CcccCeecccCCCCCChHHHHHHHhc----CCcCCEEEecCCccChhhHHhhhh--ccCCCccEEeccCCCCCCcchHHH
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNN----CMFLSYLDVSKCAITDMGISALSH--AEQLNLQVLSLSSCSEVSNKSMPA 593 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~----~~~L~~L~L~~~~l~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~ 593 (631)
+++|++|++++ +.+++.++..+... .++|++|+|++|.+++.++..+.. ..+++|++|++++|+ +++.++..
T Consensus 340 ~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~ 417 (461)
T 1z7x_W 340 NRFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQ 417 (461)
T ss_dssp CSSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHH
T ss_pred CCCccEEEccC-CccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHH
Confidence 68899999988 48888777766643 568999999999988866555441 267899999999965 88777777
Q ss_pred HHHhcC----ccccccccccc--CCCHHHHHHHHhhccccccCC
Q 006794 594 LKKLGK----TLVGLNLQNCN--SINSSTVARLVESLWRCDILS 631 (631)
Q Consensus 594 l~~~~~----~L~~L~l~~c~--~l~~~~~~~l~~~l~~~~~~~ 631 (631)
+....+ +|+.|++.++. ......++.+.+..|.+.|++
T Consensus 418 l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~s 461 (461)
T 1z7x_W 418 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEEC
T ss_pred HHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEeeC
Confidence 665432 47777776632 233456677777888877753
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=3.5e-25 Score=229.69 Aligned_cols=385 Identities=23% Similarity=0.341 Sum_probs=236.2
Q ss_pred CCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHH---HHHHHhhCCCCcEEeecCCCCCChhHHHHHhhc
Q 006794 177 PSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNES---LIAIAENCPNLTSLNIESCSKIGNDGLQAIGKF 253 (631)
Q Consensus 177 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~---l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 253 (631)
++|++|+++++ .+++..+..+...+++|++|++++| .+++.. +......+++|++|+++++ .+++..+..+...
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHH
Confidence 46778888765 5777777666677888888888875 466553 3334455688888888863 5666666666665
Q ss_pred CC----CCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhh
Q 006794 254 CR----NLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMG 329 (631)
Q Consensus 254 ~~----~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 329 (631)
++ +|++|++++|. +.+.+...+....
T Consensus 80 l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l------------------------------------------------- 109 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTL------------------------------------------------- 109 (461)
T ss_dssp TCSTTCCCCEEECTTSC-CBGGGHHHHHHHT-------------------------------------------------
T ss_pred HhhCCCceeEEEccCCC-CCHHHHHHHHHHH-------------------------------------------------
Confidence 55 57777777764 4444433332221
Q ss_pred ccccCCCcceEeccCCCCCChHHHHHHhh----cCCCcCeEEcCCCCCCCHHH---HHHHHHhcCCCCeEeccCCCCCch
Q 006794 330 NAQGLQKLVSLTIASGGGVTDVSLEAMGK----GCLNLKQMCLRKCCFVSDNG---LVAFSKAAGSLEILQLEECNRVSQ 402 (631)
Q Consensus 330 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~ 402 (631)
..+++|++|+++++. +.+.+...+.. ..++|++|++++| .+++.+ +......+++|++|+++++. +++
T Consensus 110 --~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~ 184 (461)
T 1z7x_W 110 --RTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND-INE 184 (461)
T ss_dssp --TSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHH
T ss_pred --ccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC-cch
Confidence 112334444444333 33322222221 1233444444443 232221 22222334455555554433 333
Q ss_pred hhHHHHH---hcccCCCcEEecccccCCCccc-cccccCCCCCCCceEeccCCCCCCHHHHHHHhh----cCCCCcEEec
Q 006794 403 SGILGVV---SNSASKLKSLTLVKCMGIKDMA-TEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGK----LCPQLQHVDL 474 (631)
Q Consensus 403 ~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~----~~~~L~~L~l 474 (631)
.+...+. ....++|++|++++|....... .....+..+++|++|++++|. +++..+..+.. .+++|++|++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEEC
Confidence 2222211 1112355555555542211100 001112356778888888874 66666555443 4689999999
Q ss_pred ccccCCCchhhHHHHh---hcccCccEEecCCCCCCchHHHHHHHhh---cCcccCeecccCCCCCChHHHHHHH---hc
Q 006794 475 SGLYGITDVGIFPLLE---SCKAGLVKVNLSGCLNLTDEVVLALARL---HSETLELLNLDGCRKITDASLVAIG---NN 545 (631)
Q Consensus 475 ~~~~~l~~~~~~~l~~---~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~~L~~L~l~~c~~l~~~~~~~l~---~~ 545 (631)
++| .+++.++..+.. .++ +|++|+++++ .+++.+...+... ..++|++|++++| .+++.+...+. ..
T Consensus 264 ~~n-~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 264 WEC-GITAKGCGDLCRVLRAKE-SLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQ 339 (461)
T ss_dssp TTS-CCCHHHHHHHHHHHHHCT-TCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHhhCC-CcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhh
Confidence 995 888877554443 455 9999999995 7888877766651 1269999999996 78876544443 45
Q ss_pred CCcCCEEEecCCccChhhHHhhhh---ccCCCccEEeccCCCCCCcchHHHH---HHhcCcccccccccccCCCHHHHHH
Q 006794 546 CMFLSYLDVSKCAITDMGISALSH---AEQLNLQVLSLSSCSEVSNKSMPAL---KKLGKTLVGLNLQNCNSINSSTVAR 619 (631)
Q Consensus 546 ~~~L~~L~L~~~~l~~~~~~~l~~---~~~~~L~~L~l~~c~~l~~~~~~~l---~~~~~~L~~L~l~~c~~l~~~~~~~ 619 (631)
+++|++|+|++|.+++.++..+.. ...++|++|++++|. +++.+...+ ...+++|++|++++ +.+++.++..
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~-N~i~~~~~~~ 417 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSN-NCLGDAGILQ 417 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCS-SSCCHHHHHH
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCC-CCCCHHHHHH
Confidence 899999999999999988776652 126799999999975 887544333 34478899999999 5799999999
Q ss_pred HHhhccc
Q 006794 620 LVESLWR 626 (631)
Q Consensus 620 l~~~l~~ 626 (631)
+.+.++.
T Consensus 418 l~~~l~~ 424 (461)
T 1z7x_W 418 LVESVRQ 424 (461)
T ss_dssp HHHHHTS
T ss_pred HHHHhcc
Confidence 9987654
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.94 E-value=6.9e-26 Score=224.46 Aligned_cols=252 Identities=18% Similarity=0.227 Sum_probs=149.7
Q ss_pred CCCCcCCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHHhhhhhhhhccchhhHHHhhhcccccccccccCCCCCCccc
Q 006794 45 NQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLT 124 (631)
Q Consensus 45 ~~~~i~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 124 (631)
+...|++||+||+.+||+||+ .+|+.++++|||+|++++.. + ..|
T Consensus 5 ~~~~~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~-~------------------~~~--------------- 49 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASD-E------------------SLW--------------- 49 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTC-S------------------TTS---------------
T ss_pred ccCChhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcC-c------------------hhh---------------
Confidence 456799999999999999999 99999999999999998621 0 223
Q ss_pred eeccCCCccchhhHHHhhcccCCCCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCC
Q 006794 125 RCLDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHL 204 (631)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 204 (631)
+++++++. .+.+..+..+. .++++.|++.++ .+...... ...+++
T Consensus 50 --------------------------~~l~l~~~----~~~~~~~~~~~--~~~l~~L~l~~n-~l~~~~~~--~~~~~~ 94 (336)
T 2ast_B 50 --------------------------QTLDLTGK----NLHPDVTGRLL--SQGVIAFRCPRS-FMDQPLAE--HFSPFR 94 (336)
T ss_dssp --------------------------SEEECTTC----BCCHHHHHHHH--HTTCSEEECTTC-EECSCCCS--CCCCBC
T ss_pred --------------------------eeeccccc----cCCHHHHHhhh--hccceEEEcCCc-cccccchh--hccCCC
Confidence 33333332 22222222211 146666666553 22211111 124677
Q ss_pred CCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcc
Q 006794 205 LEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVL 284 (631)
Q Consensus 205 L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L 284 (631)
|++|+++++ .+++..+..+...+++|++|++++| .+++.....+.. +++|++|++++|..+++.++.....
T Consensus 95 L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~------ 165 (336)
T 2ast_B 95 VQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLS------ 165 (336)
T ss_dssp CCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHH------
T ss_pred CCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHh------
Confidence 777777774 4665556666666777777777764 466556666655 7777777777765444433322221
Q ss_pred cceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCC-Cc
Q 006794 285 TRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCL-NL 363 (631)
Q Consensus 285 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L 363 (631)
.+++|++|++++|..+++..+......++ +|
T Consensus 166 ------------------------------------------------~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 166 ------------------------------------------------SCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp ------------------------------------------------HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred ------------------------------------------------cCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 13556666666653366555555555667 77
Q ss_pred CeEEcCCCC-CCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEeccccc
Q 006794 364 KQMCLRKCC-FVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCM 425 (631)
Q Consensus 364 ~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 425 (631)
++|++++|. .+++..+......+++|+.|++++|..+++.....+ ..+++|+.|++++|.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l--~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--FQLNYLQHLSLSRCY 258 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTCT
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH--hCCCCCCEeeCCCCC
Confidence 777777765 566666666666777777777777664444333211 112555555555544
No 8
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=3.7e-22 Score=211.74 Aligned_cols=438 Identities=15% Similarity=0.084 Sum_probs=230.1
Q ss_pred CCCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHh
Q 006794 147 HGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAE 226 (631)
Q Consensus 147 ~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 226 (631)
.++|++|+++++. +.......+ ..+++|++|+++++ .+....... ...+++|++|+++++ .++.........
T Consensus 49 l~~L~~L~Ls~n~----i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 120 (549)
T 2z81_A 49 CANLQVLILKSSR----INTIEGDAF-YSLGSLEHLDLSDN-HLSSLSSSW-FGPLSSLKYLNLMGN-PYQTLGVTSLFP 120 (549)
T ss_dssp CTTCCEEECTTSC----CCEECTTTT-TTCTTCCEEECTTS-CCCSCCHHH-HTTCTTCCEEECTTC-CCSSSCSSCSCT
T ss_pred CCcccEEECCCCC----cCccChhhc-cccccCCEEECCCC-ccCccCHHH-hccCCCCcEEECCCC-cccccchhhhhh
Confidence 3566666666652 222111111 24566777777665 343333222 235667777777663 333211112233
Q ss_pred hCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhcc
Q 006794 227 NCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYG 306 (631)
Q Consensus 227 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 306 (631)
.+++|++|+++++..++......+.. +++|++|+++++.-.. ..... ..... .++.|++..+.+.... ..+...+
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~-l~~l~-~L~~L~l~~n~~~~~~-~~~~~~l 195 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAG-LTSLNELEIKALSLRN-YQSQS-LKSIR-DIHHLTLHLSESAFLL-EIFADIL 195 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTT-CCEEEEEEEEETTCCE-ECTTT-TTTCS-EEEEEEEECSBSTTHH-HHHHHST
T ss_pred ccCCccEEECCCCccccccCHhhhhc-ccccCeeeccCCcccc-cChhh-hhccc-cCceEecccCcccccc-hhhHhhc
Confidence 46667777776643233221122333 6666666666544211 00000 01111 2555555555443322 2222345
Q ss_pred ccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHh---hcCCCcCeEEcCCCCC----------
Q 006794 307 KALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMG---KGCLNLKQMCLRKCCF---------- 373 (631)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~---------- 373 (631)
++|+.|+++++... ...+........+++|+.|++.++. +.+.....+. ..+++|+.|++.+|..
T Consensus 196 ~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 196 SSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp TTBSEEEEESCBCT-TCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred ccccEEEccCCccc-cccccccchhhhhhcccceeccccc-cchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 66777766665321 1111111111234556666665543 3333332221 2334455554444321
Q ss_pred -------------------CCH----HHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCcc
Q 006794 374 -------------------VSD----NGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDM 430 (631)
Q Consensus 374 -------------------~~~----~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 430 (631)
+.. ..+..+....++|+.|+++++. +..... .+...+++|+.|++++|......
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~--~~~~~l~~L~~L~Ls~N~l~~~~ 350 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPC--SFSQHLKSLEFLDLSENLMVEEY 350 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCH--HHHHHCTTCCEEECCSSCCCHHH
T ss_pred hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCH--HHHhcCccccEEEccCCcccccc
Confidence 100 0111223345778888887754 332211 11122489999999987644332
Q ss_pred ccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchH
Q 006794 431 ATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDE 510 (631)
Q Consensus 431 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~ 510 (631)
......+..+++|++|++++|..-.-.........+++|+.|+++++ .++. +...+... ++|++|+++++ .++..
T Consensus 351 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~~-~~L~~L~Ls~N-~l~~l 425 (549)
T 2z81_A 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHP--MPDSCQWP-EKMRFLNLSST-GIRVV 425 (549)
T ss_dssp HHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCC--CCSCCCCC-TTCCEEECTTS-CCSCC
T ss_pred ccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCcc--CChhhccc-ccccEEECCCC-Ccccc
Confidence 21122346788999999999864332222344556799999999984 4441 22112222 38999999985 44421
Q ss_pred HHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcch
Q 006794 511 VVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKS 590 (631)
Q Consensus 511 ~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~ 590 (631)
. ....++|+.|++++| +++.. ...+++|++|+|++|+++.. .... .+++|+.|++++|. ++...
T Consensus 426 ~-----~~~~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N~l~~i--p~~~--~l~~L~~L~Ls~N~-l~~~~ 489 (549)
T 2z81_A 426 K-----TCIPQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRNKLKTL--PDAS--LFPVLLVMKISRNQ-LKSVP 489 (549)
T ss_dssp C-----TTSCTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSSCCSSC--CCGG--GCTTCCEEECCSSC-CCCCC
T ss_pred c-----chhcCCceEEECCCC-Chhhh-----cccCChhcEEECCCCccCcC--CCcc--cCccCCEEecCCCc-cCCcC
Confidence 1 102368999999994 77653 24689999999999998742 2223 57899999999964 76543
Q ss_pred HHHHHHhcCcccccccccccCCCHHH-HHHHHhhc
Q 006794 591 MPALKKLGKTLVGLNLQNCNSINSST-VARLVESL 624 (631)
Q Consensus 591 ~~~l~~~~~~L~~L~l~~c~~l~~~~-~~~l~~~l 624 (631)
... ...+++|+.|++++|+-..+.. .+.+.+++
T Consensus 490 ~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l 523 (549)
T 2z81_A 490 DGI-FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 523 (549)
T ss_dssp TTG-GGGCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred HHH-HhcCcccCEEEecCCCccCCCccHHHHHHHH
Confidence 333 3456789999999977666555 34444443
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=5e-23 Score=221.19 Aligned_cols=268 Identities=17% Similarity=0.091 Sum_probs=166.7
Q ss_pred ccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhc
Q 006794 332 QGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSN 411 (631)
Q Consensus 332 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 411 (631)
..+++|++|+++++. +...+ .+ .+++|++|++.++..+... ....+++|+.|+++++. ++..+.......
T Consensus 304 ~~~~~L~~L~l~~n~-l~~lp--~~--~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~ 373 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQ-LKQFP--TL--DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNA-LSFSGCCSYSDL 373 (606)
T ss_dssp CTTCCCSEEEEESCC-CSSCC--CC--CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSC-EEEEEECCHHHH
T ss_pred cccccCCEEEccccc-Ccccc--cC--CCCccceeeccCCcCccch----hhccCCCCCEEECcCCc-cCCCcchhhhhc
Confidence 445667777777664 22222 22 5677888887776433222 11256788888888764 222210011122
Q ss_pred ccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhh
Q 006794 412 SASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLES 491 (631)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 491 (631)
.+++|+.|++++|. +..++ ..+..+++|++|++++|..... ........+++|+.|+++++ .++... ...+..
T Consensus 374 ~~~~L~~L~L~~n~-l~~~~---~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~ 446 (606)
T 3vq2_A 374 GTNSLRHLDLSFNG-AIIMS---ANFMGLEELQHLDFQHSTLKRV-TEFSAFLSLEKLLYLDISYT-NTKIDF-DGIFLG 446 (606)
T ss_dssp CCSCCCEEECCSCS-EEEEC---CCCTTCTTCCEEECTTSEEEST-TTTTTTTTCTTCCEEECTTS-CCEECC-TTTTTT
T ss_pred cCCcccEeECCCCc-cccch---hhccCCCCCCeeECCCCccCCc-cChhhhhccccCCEEECcCC-CCCccc-hhhhcC
Confidence 34888999988865 22222 4456789999999998853221 11112335689999999984 333221 112233
Q ss_pred cccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhcc
Q 006794 492 CKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAE 571 (631)
Q Consensus 492 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 571 (631)
++ +|++|++++| .+++..+..... .+++|+.|++++| .++......+ ..+++|++|+|++|.+++.....+. .
T Consensus 447 l~-~L~~L~l~~n-~l~~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~--~ 519 (606)
T 3vq2_A 447 LT-SLNTLKMAGN-SFKDNTLSNVFA-NTTNLTFLDLSKC-QLEQISWGVF-DTLHRLQLLNMSHNNLLFLDSSHYN--Q 519 (606)
T ss_dssp CT-TCCEEECTTC-EEGGGEECSCCT-TCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCSCEEGGGTT--T
T ss_pred CC-CCCEEECCCC-cCCCcchHHhhc-cCCCCCEEECCCC-cCCccChhhh-cccccCCEEECCCCcCCCcCHHHcc--C
Confidence 34 8999999985 444321111112 4789999999995 7765443333 3589999999999998876555555 7
Q ss_pred CCCccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCHHHHHHHHhhcc
Q 006794 572 QLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLW 625 (631)
Q Consensus 572 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~l~~~l~ 625 (631)
+++|+.|++++|. ++.... .+...+++|+.|++++++-..+....++.+++.
T Consensus 520 l~~L~~L~l~~N~-l~~~p~-~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 520 LYSLSTLDCSFNR-IETSKG-ILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK 571 (606)
T ss_dssp CTTCCEEECTTSC-CCCEES-CGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred CCcCCEEECCCCc-CcccCH-hHhhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence 8899999999975 663222 234444569999999977666677777777664
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=9.5e-23 Score=218.98 Aligned_cols=313 Identities=17% Similarity=0.127 Sum_probs=180.3
Q ss_pred ccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCc
Q 006794 284 LTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNL 363 (631)
Q Consensus 284 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 363 (631)
++.+++.++.+.+.....+ ..+++|+.|+++++... .. ...+..+++|++|+++++. +..... .....+++|
T Consensus 256 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~-~l----p~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L 327 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTF-HCFSGLQELDLTATHLS-EL----PSGLVGLSTLKKLVLSANK-FENLCQ-ISASNFPSL 327 (606)
T ss_dssp EEEEECTTCCCSSCCTTTT-TTCTTCSEEECTTSCCS-CC----CSSCCSCTTCCEEECTTCC-CSBGGG-GCGGGCTTC
T ss_pred eeEEEeecCccCccCHHHh-ccccCCCEEeccCCccC-CC----ChhhcccccCCEEECccCC-cCcCch-hhhhccCcC
Confidence 4444555444443322212 23466777777666321 10 1123456778888887765 433221 223456788
Q ss_pred CeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCC
Q 006794 364 KQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSL 443 (631)
Q Consensus 364 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 443 (631)
++|++.++...... ....+..+++|++|+++++.- ............+++|+.|++++|.... . ....+..+++|
T Consensus 328 ~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~~~~l~~L 402 (606)
T 3t6q_A 328 THLSIKGNTKRLEL-GTGCLENLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPLS-L--KTEAFKECPQL 402 (606)
T ss_dssp SEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSCEE-E--CTTTTTTCTTC
T ss_pred CEEECCCCCccccc-chhhhhccCcCCEEECCCCcc-ccccCcchhcccCCCCCEEECCCCcCCc-C--CHHHhcCCccC
Confidence 88888776321110 011123567888888877652 2211000111223788888888764321 1 12335567888
Q ss_pred ceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHH---HHHHhhcC
Q 006794 444 RSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVV---LALARLHS 520 (631)
Q Consensus 444 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~~~~ 520 (631)
++|++++|.... .........+++|+.|+++++ .++.... ..+..++ +|++|+++++ .+++..+ ..+. .+
T Consensus 403 ~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~-~L~~L~L~~n-~l~~~~~~~~~~~~--~l 475 (606)
T 3t6q_A 403 ELLDLAFTRLKV-KDAQSPFQNLHLLKVLNLSHS-LLDISSE-QLFDGLP-ALQHLNLQGN-HFPKGNIQKTNSLQ--TL 475 (606)
T ss_dssp SEEECTTCCEEC-CTTCCTTTTCTTCCEEECTTC-CCBTTCT-TTTTTCT-TCCEEECTTC-BCGGGEECSSCGGG--GC
T ss_pred CeEECCCCcCCC-cccchhhhCcccCCEEECCCC-ccCCcCH-HHHhCCC-CCCEEECCCC-CCCccccccchhhc--cC
Confidence 888888875321 111122335688999999884 3332211 1222334 8999999885 4443211 1122 57
Q ss_pred cccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCc
Q 006794 521 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKT 600 (631)
Q Consensus 521 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 600 (631)
++|+.|++++| .++......+ ..+++|+.|+|++|.+++.....+. .++.| .|++++|. ++......+. .+++
T Consensus 476 ~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~L-~L~L~~N~-l~~~~~~~~~-~l~~ 548 (606)
T 3t6q_A 476 GRLEILVLSFC-DLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSIEALS--HLKGI-YLNLASNH-ISIILPSLLP-ILSQ 548 (606)
T ss_dssp TTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCCGGGGGGGT--TCCSC-EEECCSSC-CCCCCGGGHH-HHHT
T ss_pred CCccEEECCCC-ccCccChhhh-ccccCCCEEECCCCccCcCChhHhC--ccccc-EEECcCCc-ccccCHhhcc-cCCC
Confidence 89999999995 7765443333 3489999999999999887776666 78888 99999965 6654433333 4457
Q ss_pred ccccccccccCCCHHHHHHHHhh
Q 006794 601 LVGLNLQNCNSINSSTVARLVES 623 (631)
Q Consensus 601 L~~L~l~~c~~l~~~~~~~l~~~ 623 (631)
|+.|++++|+-..+.....+.++
T Consensus 549 L~~L~l~~N~~~c~c~~~~~~~w 571 (606)
T 3t6q_A 549 QRTINLRQNPLDCTCSNIYFLEW 571 (606)
T ss_dssp SSEEECTTCCEECSGGGHHHHHH
T ss_pred CCEEeCCCCCccccCCcHHHHHH
Confidence 99999999765555444444433
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=3.1e-23 Score=227.72 Aligned_cols=277 Identities=19% Similarity=0.069 Sum_probs=124.5
Q ss_pred ccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCC-hHHHHHHhhcCCC
Q 006794 284 LTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVT-DVSLEAMGKGCLN 362 (631)
Q Consensus 284 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~~ 362 (631)
|+.|++.++.+.+.....+...+++|+.|+++++..... ....+..+++|++|+++++. +. .... .....+++
T Consensus 271 L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~-l~~~ip~-~~l~~l~~ 344 (768)
T 3rgz_A 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA----VPPFFGSCSLLESLALSSNN-FSGELPM-DTLLKMRG 344 (768)
T ss_dssp CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC----CCGGGGGCTTCCEEECCSSE-EEEECCH-HHHTTCTT
T ss_pred CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc----cchHHhcCCCccEEECCCCc-ccCcCCH-HHHhcCCC
Confidence 555555555444332222333345555555555421100 00112344556666666553 21 1111 11233456
Q ss_pred cCeEEcCCCCCCCHHHHHHHHHhcC-CCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCC
Q 006794 363 LKQMCLRKCCFVSDNGLVAFSKAAG-SLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNC 441 (631)
Q Consensus 363 L~~L~l~~~~~~~~~~l~~l~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 441 (631)
|++|+++++. +.......+ ..++ +|+.|++++|.- ............+++|+.|++++|...... +..+..++
T Consensus 345 L~~L~Ls~n~-l~~~~p~~l-~~l~~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---p~~l~~l~ 418 (768)
T 3rgz_A 345 LKVLDLSFNE-FSGELPESL-TNLSASLLTLDLSSNNF-SGPILPNLCQNPKNTLQELYLQNNGFTGKI---PPTLSNCS 418 (768)
T ss_dssp CCEEECCSSE-EEECCCTTH-HHHTTTCSEEECCSSEE-EEECCTTTTCSTTCCCCEEECCSSEEEEEC---CGGGGGCT
T ss_pred CCEEeCcCCc-cCccccHHH-HhhhcCCcEEEccCCCc-CCCcChhhhhcccCCccEEECCCCcccccc---CHHHhcCC
Confidence 6666665542 111000111 1223 566666655431 111000000111255666666665432221 22344566
Q ss_pred CCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCc
Q 006794 442 SLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSE 521 (631)
Q Consensus 442 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 521 (631)
+|++|++++|.. ....... ...+++|+.|+++++ .++.... ..+..++ +|++|++++| .++......+. .++
T Consensus 419 ~L~~L~Ls~N~l-~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p-~~~~~l~-~L~~L~L~~N-~l~~~~p~~l~--~l~ 490 (768)
T 3rgz_A 419 ELVSLHLSFNYL-SGTIPSS-LGSLSKLRDLKLWLN-MLEGEIP-QELMYVK-TLETLILDFN-DLTGEIPSGLS--NCT 490 (768)
T ss_dssp TCCEEECCSSEE-ESCCCGG-GGGCTTCCEEECCSS-CCCSCCC-GGGGGCT-TCCEEECCSS-CCCSCCCGGGG--GCT
T ss_pred CCCEEECcCCcc-cCcccHH-HhcCCCCCEEECCCC-cccCcCC-HHHcCCC-CceEEEecCC-cccCcCCHHHh--cCC
Confidence 777777776642 1111111 223467777777663 3322111 1122222 6777777764 33322222222 367
Q ss_pred ccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 522 TLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 522 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
+|+.|++++| .+++.....+ ..+++|+.|+|++|.++......+. .+++|+.|++++|+
T Consensus 491 ~L~~L~L~~N-~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 491 NLNWISLSNN-RLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELG--DCRSLIWLDLNTNL 549 (768)
T ss_dssp TCCEEECCSS-CCCSCCCGGG-GGCTTCCEEECCSSCCEEECCGGGG--GCTTCCEEECCSSE
T ss_pred CCCEEEccCC-ccCCcCChHH-hcCCCCCEEECCCCcccCcCCHHHc--CCCCCCEEECCCCc
Confidence 7777777773 5543322222 2367777777777776654444444 56677777777654
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=6.7e-23 Score=220.17 Aligned_cols=431 Identities=18% Similarity=0.121 Sum_probs=210.1
Q ss_pred CCCCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHH
Q 006794 146 GHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIA 225 (631)
Q Consensus 146 ~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 225 (631)
..++|++|+++++. +.......+ ..+++|++|+++++ .+...... ....+++|++|+++++ .++.... ...
T Consensus 55 ~l~~L~~L~Ls~n~----i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~i~~l~~-~~~ 125 (606)
T 3t6q_A 55 RLINLTFLDLTRCQ----IYWIHEDTF-QSQHRLDTLVLTAN-PLIFMAET-ALSGPKALKHLFFIQT-GISSIDF-IPL 125 (606)
T ss_dssp TCTTCSEEECTTCC----CCEECTTTT-TTCTTCCEEECTTC-CCSEECTT-TTSSCTTCCEEECTTS-CCSCGGG-SCC
T ss_pred cCccceEEECCCCc----cceeChhhc-cCccccCeeeCCCC-cccccChh-hhcccccccEeecccc-CcccCCc-chh
Confidence 34567777776652 222111111 24667777777665 23322111 1235667777777764 3332111 112
Q ss_pred hhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhccc--ceeccccccchhhHHHHh
Q 006794 226 ENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLT--RVKLQALNITDFSLAVIG 303 (631)
Q Consensus 226 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~--~L~l~~~~l~~~~~~~~~ 303 (631)
..+++|++|+++++ .+.......+.. +++|++|+++++. +.......+ ..... ++ .|++.++.+.......+.
T Consensus 126 ~~l~~L~~L~L~~n-~l~~~~~~~~~~-l~~L~~L~L~~n~-l~~~~~~~~-~~l~~-L~~l~L~l~~n~l~~~~~~~~~ 200 (606)
T 3t6q_A 126 HNQKTLESLYLGSN-HISSIKLPKGFP-TEKLKVLDFQNNA-IHYLSKEDM-SSLQQ-ATNLSLNLNGNDIAGIEPGAFD 200 (606)
T ss_dssp TTCTTCCEEECCSS-CCCCCCCCTTCC-CTTCCEEECCSSC-CCEECHHHH-HTTTT-CCSEEEECTTCCCCEECTTTTT
T ss_pred ccCCcccEEECCCC-cccccCcccccC-CcccCEEEcccCc-ccccChhhh-hhhcc-cceeEEecCCCccCccChhHhh
Confidence 34677777777764 233222222333 6677777777654 222111111 12222 55 556666655443222111
Q ss_pred hccccccccccCCCCC----------------------------CchhhHHHh--------------------hccccCC
Q 006794 304 HYGKALTNLVLSDLPN----------------------------VSEKGFWVM--------------------GNAQGLQ 335 (631)
Q Consensus 304 ~~~~~L~~L~l~~~~~----------------------------~~~~~~~~~--------------------~~~~~~~ 335 (631)
...|+.|++.++.. +....+... .....++
T Consensus 201 --~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~ 278 (606)
T 3t6q_A 201 --SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278 (606)
T ss_dssp --TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT
T ss_pred --hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcccc
Confidence 12333333333210 000000000 0123455
Q ss_pred CcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCC
Q 006794 336 KLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASK 415 (631)
Q Consensus 336 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 415 (631)
+|++|+++++. +... ......+++|++|+++++. +.... ......+++|+.|+++++........ . ....+++
T Consensus 279 ~L~~L~l~~n~-l~~l--p~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~-~-~~~~l~~ 351 (606)
T 3t6q_A 279 GLQELDLTATH-LSEL--PSGLVGLSTLKKLVLSANK-FENLC-QISASNFPSLTHLSIKGNTKRLELGT-G-CLENLEN 351 (606)
T ss_dssp TCSEEECTTSC-CSCC--CSSCCSCTTCCEEECTTCC-CSBGG-GGCGGGCTTCSEEECCSCSSCCBCCS-S-TTTTCTT
T ss_pred CCCEEeccCCc-cCCC--ChhhcccccCCEEECccCC-cCcCc-hhhhhccCcCCEEECCCCCcccccch-h-hhhccCc
Confidence 66666666653 3211 1112345666667666642 22211 11223456677777766542211100 0 0112367
Q ss_pred CcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccC
Q 006794 416 LKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAG 495 (631)
Q Consensus 416 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 495 (631)
|+.|++++|.. .........+..+++|++|++++|.. ...... ....+++|+.|+++++ .++.......+..++ +
T Consensus 352 L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~-~ 426 (606)
T 3t6q_A 352 LRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEP-LSLKTE-AFKECPQLELLDLAFT-RLKVKDAQSPFQNLH-L 426 (606)
T ss_dssp CCEEECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSC-EEECTT-TTTTCTTCSEEECTTC-CEECCTTCCTTTTCT-T
T ss_pred CCEEECCCCcc-ccccCcchhcccCCCCCEEECCCCcC-CcCCHH-HhcCCccCCeEECCCC-cCCCcccchhhhCcc-c
Confidence 77777776532 22221123345677777777777642 211111 1224577888888763 332222112222333 7
Q ss_pred ccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHH--HHHhcCCcCCEEEecCCccChhhHHhhhhccCC
Q 006794 496 LVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLV--AIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 573 (631)
Q Consensus 496 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~--~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~ 573 (631)
|+.|++++| .++......+. .+++|++|++++| .+++..+. .....+++|+.|++++|.+++.....+. .++
T Consensus 427 L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~ 500 (606)
T 3t6q_A 427 LKVLNLSHS-LLDISSEQLFD--GLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT--SLK 500 (606)
T ss_dssp CCEEECTTC-CCBTTCTTTTT--TCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT--TCT
T ss_pred CCEEECCCC-ccCCcCHHHHh--CCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCccCccChhhhc--ccc
Confidence 888888875 44433222222 4788888888884 55442111 1124578888888888887765444444 677
Q ss_pred CccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCH
Q 006794 574 NLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINS 614 (631)
Q Consensus 574 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~ 614 (631)
+|+.|++++|. ++......+. ..++| .|++++| +++.
T Consensus 501 ~L~~L~Ls~N~-l~~~~~~~l~-~l~~L-~L~L~~N-~l~~ 537 (606)
T 3t6q_A 501 MMNHVDLSHNR-LTSSSIEALS-HLKGI-YLNLASN-HISI 537 (606)
T ss_dssp TCCEEECCSSC-CCGGGGGGGT-TCCSC-EEECCSS-CCCC
T ss_pred CCCEEECCCCc-cCcCChhHhC-ccccc-EEECcCC-cccc
Confidence 88888888864 6655444433 34567 8888884 5553
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=1.1e-23 Score=231.23 Aligned_cols=429 Identities=20% Similarity=0.180 Sum_probs=222.3
Q ss_pred CCCCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHH--
Q 006794 146 GHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIA-- 223 (631)
Q Consensus 146 ~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~-- 223 (631)
..++|++|+++++.....++. ...+ ..+++|++|+++++. +.......+...+++|++|+++++ .++......
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~--~~~l-~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 172 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTT--LTSL-GSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWV 172 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGG--GGGG-GGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHH
T ss_pred cCCCCCEEECCCCcCCCcCCC--hHHH-hCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhh
Confidence 346777777776631111111 0012 346777777777652 221111111135667777777764 343221111
Q ss_pred HHhhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHh
Q 006794 224 IAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIG 303 (631)
Q Consensus 224 l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~ 303 (631)
....+++|++|+++++.-...... ..+++|++|+++++........ ....+. |+.|+++++.+.+.....+
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~---l~~l~~-L~~L~Ls~n~l~~~~~~~l- 243 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNFSTGIPF---LGDCSA-LQHLDISGNKLSGDFSRAI- 243 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCCCSCCCB---CTTCCS-CCEEECCSSCCCSCHHHHT-
T ss_pred hhccCCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCcCCCCCcc---cccCCC-CCEEECcCCcCCCcccHHH-
Confidence 134566777777765431111111 2366677777666543221110 112222 6666666666654443333
Q ss_pred hccccccccccCCCCCCchhhHH------------------Hhhcc-ccCCCcceEeccCCCCCChHHHHHHhhcCCCcC
Q 006794 304 HYGKALTNLVLSDLPNVSEKGFW------------------VMGNA-QGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLK 364 (631)
Q Consensus 304 ~~~~~L~~L~l~~~~~~~~~~~~------------------~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 364 (631)
..+++|+.|+++++......... ..... ..+++|++|+++++. +... +......+++|+
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L~ 321 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYGA-VPPFFGSCSLLE 321 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-EEEC-CCGGGGGCTTCC
T ss_pred hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-CCCc-cchHHhcCCCcc
Confidence 23566666666655321110000 00000 112555555555543 1111 111123456666
Q ss_pred eEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCc--hhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCC
Q 006794 365 QMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVS--QSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCS 442 (631)
Q Consensus 365 ~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 442 (631)
+|+++++. +........+..+++|++|++++|.-.. ...+... .++|+.|++++|......... .....+++
T Consensus 322 ~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l----~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~ 395 (768)
T 3rgz_A 322 SLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL----SASLLTLDLSSNNFSGPILPN-LCQNPKNT 395 (768)
T ss_dssp EEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH----TTTCSEEECCSSEEEEECCTT-TTCSTTCC
T ss_pred EEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh----hcCCcEEEccCCCcCCCcChh-hhhcccCC
Confidence 67666643 2111111223356677777776654211 1112221 137777777775432222111 11122678
Q ss_pred CceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcc
Q 006794 443 LRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSET 522 (631)
Q Consensus 443 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~ 522 (631)
|++|++++|.. .... ......+++|+.|+++++ .++.... ..+..++ +|+.|++++| .++......+. .+++
T Consensus 396 L~~L~L~~n~l-~~~~-p~~l~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~-~L~~L~L~~n-~l~~~~p~~~~--~l~~ 467 (768)
T 3rgz_A 396 LQELYLQNNGF-TGKI-PPTLSNCSELVSLHLSFN-YLSGTIP-SSLGSLS-KLRDLKLWLN-MLEGEIPQELM--YVKT 467 (768)
T ss_dssp CCEEECCSSEE-EEEC-CGGGGGCTTCCEEECCSS-EEESCCC-GGGGGCT-TCCEEECCSS-CCCSCCCGGGG--GCTT
T ss_pred ccEEECCCCcc-cccc-CHHHhcCCCCCEEECcCC-cccCccc-HHHhcCC-CCCEEECCCC-cccCcCCHHHc--CCCC
Confidence 99999988852 2111 112235689999999984 3332211 1223333 8999999986 44433222233 4789
Q ss_pred cCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCccc
Q 006794 523 LELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLV 602 (631)
Q Consensus 523 L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~ 602 (631)
|+.|++++| .++......+ ..+++|+.|+|++|.+++.....+. .+++|++|++++|. ++...... ...+++|+
T Consensus 468 L~~L~L~~N-~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~-l~~~~p~~-l~~l~~L~ 541 (768)
T 3rgz_A 468 LETLILDFN-DLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNS-FSGNIPAE-LGDCRSLI 541 (768)
T ss_dssp CCEEECCSS-CCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSC-CEEECCGG-GGGCTTCC
T ss_pred ceEEEecCC-cccCcCCHHH-hcCCCCCEEEccCCccCCcCChHHh--cCCCCCEEECCCCc-ccCcCCHH-HcCCCCCC
Confidence 999999994 6664333333 4589999999999998865555555 68899999999975 55433333 34567899
Q ss_pred cccccccc
Q 006794 603 GLNLQNCN 610 (631)
Q Consensus 603 ~L~l~~c~ 610 (631)
.|++++|+
T Consensus 542 ~L~Ls~N~ 549 (768)
T 3rgz_A 542 WLDLNTNL 549 (768)
T ss_dssp EEECCSSE
T ss_pred EEECCCCc
Confidence 99999964
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=4.7e-23 Score=221.38 Aligned_cols=254 Identities=17% Similarity=0.126 Sum_probs=138.6
Q ss_pred ccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhc
Q 006794 332 QGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSN 411 (631)
Q Consensus 332 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 411 (631)
..+++|+.|+++++. +.... ....+++|++|++.+|.. .. +..+ .+++|+.|+++++.......+ .
T Consensus 282 ~~l~~L~~L~l~~~~-~~~l~---~l~~~~~L~~L~l~~n~l-~~--lp~~--~l~~L~~L~l~~n~~~~~~~~-----~ 347 (606)
T 3vq2_A 282 HCLANVSAMSLAGVS-IKYLE---DVPKHFKWQSLSIIRCQL-KQ--FPTL--DLPFLKSLTLTMNKGSISFKK-----V 347 (606)
T ss_dssp GGGTTCSEEEEESCC-CCCCC---CCCTTCCCSEEEEESCCC-SS--CCCC--CCSSCCEEEEESCSSCEECCC-----C
T ss_pred ccCCCCCEEEecCcc-chhhh---hccccccCCEEEcccccC-cc--cccC--CCCccceeeccCCcCccchhh-----c
Confidence 344556666665543 22211 122345666666666532 11 1122 456666666666543332211 1
Q ss_pred ccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhh
Q 006794 412 SASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLES 491 (631)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 491 (631)
.+++|+.|++++|.. .........+..+++|++|++++|. +.... .....+++|+.|+++++ .+........+..
T Consensus 348 ~l~~L~~L~ls~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 348 ALPSLSYLDLSRNAL-SFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS--ANFMGLEELQHLDFQHS-TLKRVTEFSAFLS 422 (606)
T ss_dssp CCTTCCEEECCSSCE-EEEEECCHHHHCCSCCCEEECCSCS-EEEEC--CCCTTCTTCCEEECTTS-EEESTTTTTTTTT
T ss_pred cCCCCCEEECcCCcc-CCCcchhhhhccCCcccEeECCCCc-cccch--hhccCCCCCCeeECCCC-ccCCccChhhhhc
Confidence 236666666666432 2211112223456677777777664 21111 11223577777777763 2222211112223
Q ss_pred cccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhcc
Q 006794 492 CKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAE 571 (631)
Q Consensus 492 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 571 (631)
++ +|++|++++| .++......+. .+++|++|++++| .+++..+......+++|+.|++++|.+++.....+. .
T Consensus 423 l~-~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~ 495 (606)
T 3vq2_A 423 LE-KLLYLDISYT-NTKIDFDGIFL--GLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD--T 495 (606)
T ss_dssp CT-TCCEEECTTS-CCEECCTTTTT--TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT--T
T ss_pred cc-cCCEEECcCC-CCCccchhhhc--CCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc--c
Confidence 33 7888888885 34432222222 4788899998884 665422222234588999999999988775544454 7
Q ss_pred CCCccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCH
Q 006794 572 QLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINS 614 (631)
Q Consensus 572 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~ 614 (631)
+++|++|++++|. ++......+ ..+++|++|++++| +++.
T Consensus 496 l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~l~~N-~l~~ 535 (606)
T 3vq2_A 496 LHRLQLLNMSHNN-LLFLDSSHY-NQLYSLSTLDCSFN-RIET 535 (606)
T ss_dssp CTTCCEEECCSSC-CSCEEGGGT-TTCTTCCEEECTTS-CCCC
T ss_pred cccCCEEECCCCc-CCCcCHHHc-cCCCcCCEEECCCC-cCcc
Confidence 7899999999975 665433333 34567999999995 5653
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=6.6e-22 Score=211.01 Aligned_cols=423 Identities=15% Similarity=0.116 Sum_probs=207.4
Q ss_pred CCCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHh
Q 006794 147 HGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAE 226 (631)
Q Consensus 147 ~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 226 (631)
+++|++|+++++. ...+....+ ..+++|++|+++++ .+..... ..+..+++|++|+++++ .++..... ...
T Consensus 51 l~~L~~L~Ls~n~-i~~i~~~~~----~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~-~~~ 121 (570)
T 2z63_A 51 FPELQVLDLSRCE-IQTIEDGAY----QSLSHLSTLILTGN-PIQSLAL-GAFSGLSSLQKLVAVET-NLASLENF-PIG 121 (570)
T ss_dssp CSSCCEEECTTCC-CCEECTTTT----TTCTTCCEEECTTC-CCCEECT-TTTTTCTTCCEEECTTS-CCCCSTTC-SCT
T ss_pred CCCceEEECCCCc-CCccCcccc----cCchhCCEEeCcCC-cCCccCH-hhhcCcccccccccccc-ccccCCCc-ccc
Confidence 4677888887762 122222111 35677888888765 3433221 12236777888888764 33321100 133
Q ss_pred hCCCCcEEeecCCCCCCh-hHHHHHhhcCCCCcEEEccCCCCcc--hhhHHHHHhhhhhcccceeccccccchhhHHHHh
Q 006794 227 NCPNLTSLNIESCSKIGN-DGLQAIGKFCRNLQCLSIKDCPLVR--DQGISSLLSSASSVLTRVKLQALNITDFSLAVIG 303 (631)
Q Consensus 227 ~l~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~ 303 (631)
.+++|++|+++++. +.. .....+.. +++|++|+++++.-.. ...+..+... +.....+++.++.+.......+.
T Consensus 122 ~l~~L~~L~L~~n~-l~~~~lp~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~~~~~L~l~~n~l~~~~~~~~~ 198 (570)
T 2z63_A 122 HLKTLKELNVAHNL-IQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQM-PLLNLSLDLSLNPMNFIQPGAFK 198 (570)
T ss_dssp TCTTCCEEECCSSC-CCCCCCCGGGGG-CTTCCEEECTTSCCCEECGGGGHHHHTC-TTCCCEEECTTCCCCEECTTTTT
T ss_pred ccccccEEecCCCc-cceecChhhhcc-cCCCCEEeCcCCccceecHHHccchhcc-chhhhhcccCCCCceecCHHHhc
Confidence 57788888887643 332 11222333 7788888887764221 1222222210 00014455555544433222211
Q ss_pred hccccccccccCCCCCC---------------------------------chhhHHH---------------------hh
Q 006794 304 HYGKALTNLVLSDLPNV---------------------------------SEKGFWV---------------------MG 329 (631)
Q Consensus 304 ~~~~~L~~L~l~~~~~~---------------------------------~~~~~~~---------------------~~ 329 (631)
. .+|+.|++.++... ....+.. ..
T Consensus 199 ~--~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 276 (570)
T 2z63_A 199 E--IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276 (570)
T ss_dssp T--CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred c--CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh
Confidence 1 13444444332100 0000000 01
Q ss_pred ccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHH
Q 006794 330 NAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVV 409 (631)
Q Consensus 330 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 409 (631)
....+++|+.|+++++. +.. +......+ +|++|++.++.. .. +.. ..+++|+.|++.++........
T Consensus 277 ~~~~l~~L~~L~l~~~~-l~~--l~~~~~~~-~L~~L~l~~n~~-~~--l~~--~~l~~L~~L~l~~n~~~~~~~~---- 343 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVT-IER--VKDFSYNF-GWQHLELVNCKF-GQ--FPT--LKLKSLKRLTFTSNKGGNAFSE---- 343 (570)
T ss_dssp TTGGGTTCSEEEEESCE-ECS--CCBCCSCC-CCSEEEEESCBC-SS--CCB--CBCSSCCEEEEESCBSCCBCCC----
T ss_pred hhcCcCcccEEEecCcc-chh--hhhhhccC-CccEEeeccCcc-cc--cCc--ccccccCEEeCcCCcccccccc----
Confidence 11234556666665543 211 11112223 566666655432 11 000 1356666666665442221111
Q ss_pred hcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHH
Q 006794 410 SNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLL 489 (631)
Q Consensus 410 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~ 489 (631)
..+++|+.|++++|.. .........+..+++|++|++++|.... .... ...+++|+.|+++++ .++.......+
T Consensus 344 -~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~ 417 (570)
T 2z63_A 344 -VDLPSLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN--FLGLEQLEHLDFQHS-NLKQMSEFSVF 417 (570)
T ss_dssp -CBCTTCCEEECCSSCC-BEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEE--EETCTTCCEEECTTS-EEESCTTSCTT
T ss_pred -ccCCCCCEEeCcCCcc-CccccccccccccCccCEEECCCCcccc-cccc--ccccCCCCEEEccCC-ccccccchhhh
Confidence 2236677777766432 2221111223456677777777664211 1001 234577777777763 22221111122
Q ss_pred hhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhh
Q 006794 490 ESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSH 569 (631)
Q Consensus 490 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~ 569 (631)
..++ +|++|++++| .+.......+. .+++|+.|++++| .+++..+......+++|+.|+|++|.+++.....+.
T Consensus 418 ~~l~-~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~- 491 (570)
T 2z63_A 418 LSLR-NLIYLDISHT-HTRVAFNGIFN--GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN- 491 (570)
T ss_dssp TTCT-TCCEEECTTS-CCEECCTTTTT--TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-
T ss_pred hcCC-CCCEEeCcCC-cccccchhhhh--cCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCccccCChhhhh-
Confidence 3333 7888888875 33332222222 4788888888884 554322222234588888888888888765455554
Q ss_pred ccCCCccEEeccCCCCCCcchHHHHHHhcCcccccccccccC
Q 006794 570 AEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNS 611 (631)
Q Consensus 570 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~ 611 (631)
.+++|++|++++|. ++...... ...+++|+.|++++++-
T Consensus 492 -~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 492 -SLSSLQVLNMASNQ-LKSVPDGI-FDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp -TCTTCCEEECCSSC-CSCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred -cccCCCEEeCCCCc-CCCCCHHH-hhcccCCcEEEecCCcc
Confidence 67788999998864 65443222 34466788888888543
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=7e-19 Score=174.78 Aligned_cols=303 Identities=19% Similarity=0.165 Sum_probs=183.3
Q ss_pred hCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhcc
Q 006794 227 NCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYG 306 (631)
Q Consensus 227 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 306 (631)
.+++|++|++.++. +.. +..+.. +++|++|+++++. +.+... .. .+
T Consensus 42 ~l~~L~~L~l~~~~-i~~--~~~~~~-~~~L~~L~l~~n~-i~~~~~---~~--------------------------~l 87 (347)
T 4fmz_A 42 ELESITKLVVAGEK-VAS--IQGIEY-LTNLEYLNLNGNQ-ITDISP---LS--------------------------NL 87 (347)
T ss_dssp HHTTCSEEECCSSC-CCC--CTTGGG-CTTCCEEECCSSC-CCCCGG---GT--------------------------TC
T ss_pred hcccccEEEEeCCc-ccc--chhhhh-cCCccEEEccCCc-cccchh---hh--------------------------cC
Confidence 47899999999854 332 122334 8899999998875 222111 11 23
Q ss_pred ccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhc
Q 006794 307 KALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAA 386 (631)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 386 (631)
++|+.|+++++... .. .....+++|++|+++++. +..... ...+++|+.|+++++....... . ...+
T Consensus 88 ~~L~~L~L~~n~i~-~~-----~~~~~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~--~-~~~l 154 (347)
T 4fmz_A 88 VKLTNLYIGTNKIT-DI-----SALQNLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLS--P-LSNM 154 (347)
T ss_dssp TTCCEEECCSSCCC-CC-----GGGTTCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCG--G-GTTC
T ss_pred CcCCEEEccCCccc-Cc-----hHHcCCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCccccc--c-hhhC
Confidence 44555555444211 11 123456677777777664 332221 3456777777777764443221 1 3456
Q ss_pred CCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcC
Q 006794 387 GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLC 466 (631)
Q Consensus 387 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 466 (631)
++|+.|++++|....... ...+++|+.|++++|.. .++. .+..+++|+.|++++|....... ...+
T Consensus 155 ~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~n~l-~~~~----~~~~l~~L~~L~l~~n~l~~~~~----~~~~ 220 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP-----IANLTDLYSLSLNYNQI-EDIS----PLASLTSLHYFTAYVNQITDITP----VANM 220 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-----GGGCTTCSEEECTTSCC-CCCG----GGGGCTTCCEEECCSSCCCCCGG----GGGC
T ss_pred CCCcEEEecCCCcCCchh-----hccCCCCCEEEccCCcc-cccc----cccCCCccceeecccCCCCCCch----hhcC
Confidence 777777777765322222 12337788888877642 2221 14567788888888775332211 3456
Q ss_pred CCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcC
Q 006794 467 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 546 (631)
Q Consensus 467 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 546 (631)
++|+.|+++++ .+++... +..++ +|++|++++| .+++. ..+. .+++|++|++++| .+++.. . ...+
T Consensus 221 ~~L~~L~l~~n-~l~~~~~---~~~l~-~L~~L~l~~n-~l~~~--~~~~--~l~~L~~L~l~~n-~l~~~~--~-~~~l 286 (347)
T 4fmz_A 221 TRLNSLKIGNN-KITDLSP---LANLS-QLTWLEIGTN-QISDI--NAVK--DLTKLKMLNVGSN-QISDIS--V-LNNL 286 (347)
T ss_dssp TTCCEEECCSS-CCCCCGG---GTTCT-TCCEEECCSS-CCCCC--GGGT--TCTTCCEEECCSS-CCCCCG--G-GGGC
T ss_pred CcCCEEEccCC-ccCCCcc---hhcCC-CCCEEECCCC-ccCCC--hhHh--cCCCcCEEEccCC-ccCCCh--h-hcCC
Confidence 88888888874 4433221 33344 8888888885 44442 2222 4788999999884 666542 2 3458
Q ss_pred CcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCccccccccccc
Q 006794 547 MFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCN 610 (631)
Q Consensus 547 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~ 610 (631)
++|+.|++++|.+++.....+. .+++|++|++++|+ ++.... ...+++|++|++++|+
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIG--GLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHH--TCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred CCCCEEECcCCcCCCcChhHhh--ccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 8999999999988877766666 78899999999976 654332 3456779999998853
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=187.65 Aligned_cols=427 Identities=15% Similarity=0.083 Sum_probs=223.8
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhh
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 227 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 227 (631)
+.+++|+++++. +.......+ ..+++|++|+++++ .+..... ..+..+++|++|+++++ .++. ++.. .
T Consensus 21 ~~L~~L~Ls~n~----i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~--lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQNY----ISELWTSDI-LSLSKLRILIISHN-RIQYLDI-SVFKFNQELEYLDLSHN-KLVK--ISCH--P 88 (520)
T ss_dssp TTCSEEECCSSC----CCCCCHHHH-TTCTTCCEEECCSS-CCCEEEG-GGGTTCTTCCEEECCSS-CCCE--EECC--C
T ss_pred ccccEEECCCCc----ccccChhhc-cccccccEEecCCC-ccCCcCh-HHhhcccCCCEEecCCC-ceee--cCcc--c
Confidence 688899998873 333322233 35888999999876 4544322 22347789999999884 5553 2222 5
Q ss_pred CCCCcEEeecCCCCCChhHH-HHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcc--cceecccccc--chhhHHHH
Q 006794 228 CPNLTSLNIESCSKIGNDGL-QAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVL--TRVKLQALNI--TDFSLAVI 302 (631)
Q Consensus 228 l~~L~~L~l~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L--~~L~l~~~~l--~~~~~~~~ 302 (631)
+++|++|+++++. ++...+ ..+.. +++|++|+++++. +....+.. ... + +.|.+.++.+ .......+
T Consensus 89 l~~L~~L~L~~N~-l~~~~~p~~~~~-l~~L~~L~L~~n~-l~~~~~~~----l~~-L~L~~L~l~~n~l~~~~~~~~~l 160 (520)
T 2z7x_B 89 TVNLKHLDLSFNA-FDALPICKEFGN-MSQLKFLGLSTTH-LEKSSVLP----IAH-LNISKVLLVLGETYGEKEDPEGL 160 (520)
T ss_dssp CCCCSEEECCSSC-CSSCCCCGGGGG-CTTCCEEEEEESS-CCGGGGGG----GTT-SCEEEEEEEECTTTTSSCCTTTT
T ss_pred cCCccEEeccCCc-cccccchhhhcc-CCcceEEEecCcc-cchhhccc----ccc-ceeeEEEeecccccccccccccc
Confidence 7889999998753 433222 33444 8889999988865 33322221 111 4 7777777766 32222222
Q ss_pred hh-------------------------ccccccccccCCCCC--CchhhHHHhhccccCCCcceEeccCCCCCChHHHHH
Q 006794 303 GH-------------------------YGKALTNLVLSDLPN--VSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEA 355 (631)
Q Consensus 303 ~~-------------------------~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 355 (631)
.. .+++|+.|+++++.. ........+.....+++|+.|++.++. +....+..
T Consensus 161 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~ 239 (520)
T 2z7x_B 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE-TTWNSFIR 239 (520)
T ss_dssp TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE-EEHHHHHH
T ss_pred cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccc-cCHHHHHH
Confidence 21 245666666665431 000111222345667888888887764 44443333
Q ss_pred Hhh--cCCCcCeEEcCCCCCCCHHHHHHH----HHhcCCCCeEeccCCCC-CchhhHHHHHhcccCCCcEEecccccCCC
Q 006794 356 MGK--GCLNLKQMCLRKCCFVSDNGLVAF----SKAAGSLEILQLEECNR-VSQSGILGVVSNSASKLKSLTLVKCMGIK 428 (631)
Q Consensus 356 l~~--~~~~L~~L~l~~~~~~~~~~l~~l----~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (631)
+.. .+++|++|+++++. +.+.....+ ...+++|+.++++++.. +....+...+. . .+|+.|+++++....
T Consensus 240 ~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~-~-~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 240 ILQLVWHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS-N-MNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHHHTSSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHH-T-CCCSEEEEESSCCCC
T ss_pred HHHHhhhCcccEEEeeccc-ccCccccchhhcccccCceeEeccccccceecchhhhhcccc-c-CceeEEEcCCCcccc
Confidence 321 24688888887753 111000000 02345566666655442 11111211111 1 457777777754222
Q ss_pred ccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCc-hhhHHHHhhcccCccEEecCCCCCC
Q 006794 429 DMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITD-VGIFPLLESCKAGLVKVNLSGCLNL 507 (631)
Q Consensus 429 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~L~~L~l~~c~~l 507 (631)
.. ....+++|++|++++|. ++......+ ..+++|+.|++++ +.++. ..+...+..++ +|++|+++++ .+
T Consensus 317 -~~----~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~-N~l~~l~~~~~~~~~l~-~L~~L~Ls~N-~l 386 (520)
T 2z7x_B 317 -ML----CPSKISPFLHLDFSNNL-LTDTVFENC-GHLTELETLILQM-NQLKELSKIAEMTTQMK-SLQQLDISQN-SV 386 (520)
T ss_dssp -CC----CCSSCCCCCEEECCSSC-CCTTTTTTC-CCCSSCCEEECCS-SCCCBHHHHHHHHTTCT-TCCEEECCSS-CC
T ss_pred -cc----chhhCCcccEEEeECCc-cChhhhhhh-ccCCCCCEEEccC-CccCccccchHHHhhCC-CCCEEECCCC-cC
Confidence 11 11456777777777764 322111112 3456777777776 34443 12222333343 6777777764 44
Q ss_pred ch-HHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcC-CcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCC
Q 006794 508 TD-EVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC-MFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSE 585 (631)
Q Consensus 508 ~~-~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~-~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~ 585 (631)
+. .....+ . .+++|++|++++ +.++.... ..+ ++|+.|++++|.++.. ...+. .+++|++|++++|.
T Consensus 387 ~~~l~~~~~-~-~l~~L~~L~Ls~-N~l~~~~~----~~l~~~L~~L~Ls~N~l~~i-p~~~~--~l~~L~~L~L~~N~- 455 (520)
T 2z7x_B 387 SYDEKKGDC-S-WTKSLLSLNMSS-NILTDTIF----RCLPPRIKVLDLHSNKIKSI-PKQVV--KLEALQELNVASNQ- 455 (520)
T ss_dssp BCCGGGCSC-C-CCTTCCEEECCS-SCCCGGGG----GSCCTTCCEEECCSSCCCCC-CGGGG--GCTTCCEEECCSSC-
T ss_pred Ccccccchh-c-cCccCCEEECcC-CCCCcchh----hhhcccCCEEECCCCccccc-chhhh--cCCCCCEEECCCCc-
Confidence 43 211111 1 356777777777 35553322 222 5777777777776631 11222 56677777777754
Q ss_pred CCcchHHHHHHhcCcccccccccccCCCHHHHHHH
Q 006794 586 VSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARL 620 (631)
Q Consensus 586 l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~l 620 (631)
++..... ....+++|++|++++++--.+..+..+
T Consensus 456 l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 456 LKSVPDG-IFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CCCCCTT-TTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred CCccCHH-HhccCCcccEEECcCCCCcccCCchHH
Confidence 5432211 123355677777777554445555554
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=1.5e-18 Score=179.39 Aligned_cols=341 Identities=20% Similarity=0.185 Sum_probs=174.8
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhh
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 227 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 227 (631)
++++.|++.++. ...++. ...+++|++|+++++ .+..... ...+++|++|+++++ .+... .. ...
T Consensus 46 ~~l~~L~l~~~~-i~~l~~------~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~-~~~ 110 (466)
T 1o6v_A 46 DQVTTLQADRLG-IKSIDG------VEYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNN-QIADI--TP-LAN 110 (466)
T ss_dssp HTCCEEECCSSC-CCCCTT------GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC--GG-GTT
T ss_pred ccccEEecCCCC-CccCcc------hhhhcCCCEEECCCC-ccCCchh---hhccccCCEEECCCC-ccccC--hh-hcC
Confidence 356666666552 111111 134566666666655 2332221 335666666666664 23321 11 334
Q ss_pred CCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccc
Q 006794 228 CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGK 307 (631)
Q Consensus 228 l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 307 (631)
+++|++|+++++. +++.. .+ ..+++|++|+++++. +.+.. ....++
T Consensus 111 l~~L~~L~L~~n~-l~~~~--~~-~~l~~L~~L~l~~n~---------------------------l~~~~---~~~~l~ 156 (466)
T 1o6v_A 111 LTNLTGLTLFNNQ-ITDID--PL-KNLTNLNRLELSSNT---------------------------ISDIS---ALSGLT 156 (466)
T ss_dssp CTTCCEEECCSSC-CCCCG--GG-TTCTTCSEEEEEEEE---------------------------ECCCG---GGTTCT
T ss_pred CCCCCEEECCCCC-CCCCh--HH-cCCCCCCEEECCCCc---------------------------cCCCh---hhccCC
Confidence 6666666666542 32211 12 225666666665543 22211 012345
Q ss_pred cccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcC
Q 006794 308 ALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAG 387 (631)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 387 (631)
+|+.|++.+. +.. ......+++|+.|+++++. +.... ....+++|++|+++++. +.+... ...++
T Consensus 157 ~L~~L~l~~~--~~~-----~~~~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~ 221 (466)
T 1o6v_A 157 SLQQLSFGNQ--VTD-----LKPLANLTTLERLDISSNK-VSDIS---VLAKLTNLESLIATNNQ-ISDITP---LGILT 221 (466)
T ss_dssp TCSEEEEEES--CCC-----CGGGTTCTTCCEEECCSSC-CCCCG---GGGGCTTCSEEECCSSC-CCCCGG---GGGCT
T ss_pred cccEeecCCc--ccC-----chhhccCCCCCEEECcCCc-CCCCh---hhccCCCCCEEEecCCc-cccccc---ccccC
Confidence 5555555321 111 1113456677777777664 33221 13445777777777653 222111 23467
Q ss_pred CCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCC
Q 006794 388 SLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCP 467 (631)
Q Consensus 388 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 467 (631)
+|+.|++++|. ++..+. ...+++|+.|++++|...... .+..+++|++|++++|....... ...++
T Consensus 222 ~L~~L~l~~n~-l~~~~~----l~~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~~----~~~l~ 287 (466)
T 1o6v_A 222 NLDELSLNGNQ-LKDIGT----LASLTNLTDLDLANNQISNLA-----PLSGLTKLTELKLGANQISNISP----LAGLT 287 (466)
T ss_dssp TCCEEECCSSC-CCCCGG----GGGCTTCSEEECCSSCCCCCG-----GGTTCTTCSEEECCSSCCCCCGG----GTTCT
T ss_pred CCCEEECCCCC-cccchh----hhcCCCCCEEECCCCccccch-----hhhcCCCCCEEECCCCccCcccc----ccCCC
Confidence 77777777654 222211 112367777777775432211 14567777777777765322111 33457
Q ss_pred CCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCC
Q 006794 468 QLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCM 547 (631)
Q Consensus 468 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 547 (631)
+|+.|+++++ .+++.. . +..++ +|+.|++++| .+++... +. .+++|+.|++++| .+++. ..+ ..++
T Consensus 288 ~L~~L~L~~n-~l~~~~--~-~~~l~-~L~~L~L~~n-~l~~~~~--~~--~l~~L~~L~l~~n-~l~~~--~~l-~~l~ 353 (466)
T 1o6v_A 288 ALTNLELNEN-QLEDIS--P-ISNLK-NLTYLTLYFN-NISDISP--VS--SLTKLQRLFFYNN-KVSDV--SSL-ANLT 353 (466)
T ss_dssp TCSEEECCSS-CCSCCG--G-GGGCT-TCSEEECCSS-CCSCCGG--GG--GCTTCCEEECCSS-CCCCC--GGG-TTCT
T ss_pred ccCeEEcCCC-cccCch--h-hcCCC-CCCEEECcCC-cCCCchh--hc--cCccCCEeECCCC-ccCCc--hhh-ccCC
Confidence 7777777763 333221 1 22333 7777777775 3443221 12 4677777777774 55543 222 3477
Q ss_pred cCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 548 FLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 548 ~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
+|+.|++++|.+++... +. .+++|+.|++++|+
T Consensus 354 ~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP--LA--NLTRITQLGLNDQA 386 (466)
T ss_dssp TCCEEECCSSCCCBCGG--GT--TCTTCCEEECCCEE
T ss_pred CCCEEeCCCCccCccch--hh--cCCCCCEEeccCCc
Confidence 77777777777765432 33 66777777777764
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=1.2e-18 Score=180.00 Aligned_cols=342 Identities=18% Similarity=0.141 Sum_probs=231.0
Q ss_pred CCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCC
Q 006794 176 CPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCR 255 (631)
Q Consensus 176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 255 (631)
+++|++|++.++. +.... . ...+++|++|+++++ .++.. .. ...+++|++|+++++. +..... +. .++
T Consensus 45 l~~l~~L~l~~~~-i~~l~--~-~~~l~~L~~L~Ls~n-~l~~~--~~-~~~l~~L~~L~l~~n~-l~~~~~--~~-~l~ 112 (466)
T 1o6v_A 45 LDQVTTLQADRLG-IKSID--G-VEYLNNLTQINFSNN-QLTDI--TP-LKNLTKLVDILMNNNQ-IADITP--LA-NLT 112 (466)
T ss_dssp HHTCCEEECCSSC-CCCCT--T-GGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSC-CCCCGG--GT-TCT
T ss_pred hccccEEecCCCC-CccCc--c-hhhhcCCCEEECCCC-ccCCc--hh-hhccccCCEEECCCCc-cccChh--hc-CCC
Confidence 4588999998763 33221 2 347889999999885 44432 22 4568899999998753 333221 33 388
Q ss_pred CCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCC
Q 006794 256 NLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQ 335 (631)
Q Consensus 256 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 335 (631)
+|++|+++++.- . .+ .. ...+++|+.|+++++..... .....++
T Consensus 113 ~L~~L~L~~n~l-~----------------~~----------~~---~~~l~~L~~L~l~~n~l~~~------~~~~~l~ 156 (466)
T 1o6v_A 113 NLTGLTLFNNQI-T----------------DI----------DP---LKNLTNLNRLELSSNTISDI------SALSGLT 156 (466)
T ss_dssp TCCEEECCSSCC-C----------------CC----------GG---GTTCTTCSEEEEEEEEECCC------GGGTTCT
T ss_pred CCCEEECCCCCC-C----------------CC----------hH---HcCCCCCCEEECCCCccCCC------hhhccCC
Confidence 888888887642 1 11 00 12467888888887742221 2246789
Q ss_pred CcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCC
Q 006794 336 KLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASK 415 (631)
Q Consensus 336 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 415 (631)
+|++|.+.+.. .... . ...+++|+.|+++++. +.+. . ....+++|+.|++++|.-..... ...+++
T Consensus 157 ~L~~L~l~~~~--~~~~--~-~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~ 222 (466)
T 1o6v_A 157 SLQQLSFGNQV--TDLK--P-LANLTTLERLDISSNK-VSDI--S-VLAKLTNLESLIATNNQISDITP-----LGILTN 222 (466)
T ss_dssp TCSEEEEEESC--CCCG--G-GTTCTTCCEEECCSSC-CCCC--G-GGGGCTTCSEEECCSSCCCCCGG-----GGGCTT
T ss_pred cccEeecCCcc--cCch--h-hccCCCCCEEECcCCc-CCCC--h-hhccCCCCCEEEecCCccccccc-----ccccCC
Confidence 99999997532 2211 1 4567999999999974 3332 1 13578999999999876333222 223499
Q ss_pred CcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccC
Q 006794 416 LKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAG 495 (631)
Q Consensus 416 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 495 (631)
|+.|++++|. +.++ ..+..+++|++|++++|....... ...+++|+.|+++++ .++.... +..++ +
T Consensus 223 L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~~---~~~l~-~ 288 (466)
T 1o6v_A 223 LDELSLNGNQ-LKDI----GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGAN-QISNISP---LAGLT-A 288 (466)
T ss_dssp CCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSS-CCCCCGG---GTTCT-T
T ss_pred CCEEECCCCC-cccc----hhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCC-ccCcccc---ccCCC-c
Confidence 9999999975 3333 235678999999999986433222 446799999999984 4443221 33444 8
Q ss_pred ccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCc
Q 006794 496 LVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNL 575 (631)
Q Consensus 496 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L 575 (631)
|+.|++++| .+++... +. .+++|+.|++++| .+++... ...+++|+.|++++|.+++. ..+. .+++|
T Consensus 289 L~~L~L~~n-~l~~~~~--~~--~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~--~l~~L 355 (466)
T 1o6v_A 289 LTNLELNEN-QLEDISP--IS--NLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNKVSDV--SSLA--NLTNI 355 (466)
T ss_dssp CSEEECCSS-CCSCCGG--GG--GCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSCCCCC--GGGT--TCTTC
T ss_pred cCeEEcCCC-cccCchh--hc--CCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCccCCc--hhhc--cCCCC
Confidence 999999996 4544322 22 5899999999995 6765433 34699999999999998874 3444 78899
Q ss_pred cEEeccCCCCCCcchHHHHHHhcCccccccccccc
Q 006794 576 QVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCN 610 (631)
Q Consensus 576 ~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~ 610 (631)
+.|++++|. +++... ...+++|+.|++++|+
T Consensus 356 ~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 356 NWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp CEEECCSSC-CCBCGG---GTTCTTCCEEECCCEE
T ss_pred CEEeCCCCc-cCccch---hhcCCCCCEEeccCCc
Confidence 999999976 665443 4556789999999953
No 20
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=1.6e-18 Score=171.43 Aligned_cols=167 Identities=23% Similarity=0.362 Sum_probs=113.6
Q ss_pred CCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCC-CCchHHHHHHH
Q 006794 438 SPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCL-NLTDEVVLALA 516 (631)
Q Consensus 438 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~-~l~~~~~~~l~ 516 (631)
..+++|++|++++|..+++..+..+...+++|++|++++|..+++.++...+..++.+|++|++++|. .+++..+....
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 34677777777777667766666666677888888888765777766666666664478888888765 56666665555
Q ss_pred hhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCC-ccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHH
Q 006794 517 RLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKC-AITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALK 595 (631)
Q Consensus 517 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 595 (631)
. .+++|++|++++|..+++..+..+.. +++|+.|++++| .+++.++..+. .+++|+.|++++| +++..+..+.
T Consensus 219 ~-~~~~L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~--i~~~~~~~l~ 292 (336)
T 2ast_B 219 R-RCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELG--EIPTLKTLQVFGI--VPDGTLQLLK 292 (336)
T ss_dssp H-HCTTCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCTTCCGGGGGGGG--GCTTCCEEECTTS--SCTTCHHHHH
T ss_pred h-hCCCCCEEeCCCCCcCCHHHHHHHhC-CCCCCEeeCCCCCCCCHHHHHHHh--cCCCCCEEeccCc--cCHHHHHHHH
Confidence 5 57788888888865477666655543 788888888887 56666665555 6778888888886 7766666655
Q ss_pred HhcCcccccccccccCCCH
Q 006794 596 KLGKTLVGLNLQNCNSINS 614 (631)
Q Consensus 596 ~~~~~L~~L~l~~c~~l~~ 614 (631)
.. ++.|++++ +.++.
T Consensus 293 ~~---l~~L~l~~-n~l~~ 307 (336)
T 2ast_B 293 EA---LPHLQINC-SHFTT 307 (336)
T ss_dssp HH---STTSEESC-CCSCC
T ss_pred hh---CcceEEec-ccCcc
Confidence 43 44455654 55554
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=9.7e-18 Score=166.51 Aligned_cols=303 Identities=19% Similarity=0.151 Sum_probs=191.1
Q ss_pred hCCCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhh
Q 006794 201 ECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSA 280 (631)
Q Consensus 201 ~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 280 (631)
.+++|++|+++++ .+.+ +.. ...+++|++|+++++ .+++... + ..+++|++|+++++. +.... . .
T Consensus 42 ~l~~L~~L~l~~~-~i~~--~~~-~~~~~~L~~L~l~~n-~i~~~~~--~-~~l~~L~~L~L~~n~-i~~~~--~-~--- 106 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVAS--IQG-IEYLTNLEYLNLNGN-QITDISP--L-SNLVKLTNLYIGTNK-ITDIS--A-L--- 106 (347)
T ss_dssp HHTTCSEEECCSS-CCCC--CTT-GGGCTTCCEEECCSS-CCCCCGG--G-TTCTTCCEEECCSSC-CCCCG--G-G---
T ss_pred hcccccEEEEeCC-cccc--chh-hhhcCCccEEEccCC-ccccchh--h-hcCCcCCEEEccCCc-ccCch--H-H---
Confidence 5689999999985 4443 222 356999999999986 4444222 3 449999999999875 22211 0 1
Q ss_pred hhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcC
Q 006794 281 SSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGC 360 (631)
Q Consensus 281 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 360 (631)
..+++|+.|+++++....... ...+++|++|+++++........ ...+
T Consensus 107 -----------------------~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~~~---~~~l 154 (347)
T 4fmz_A 107 -----------------------QNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDLSP---LSNM 154 (347)
T ss_dssp -----------------------TTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCCGG---GTTC
T ss_pred -----------------------cCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCcccccc---hhhC
Confidence 123455555555442211111 24567777777777643433221 3456
Q ss_pred CCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCC
Q 006794 361 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 440 (631)
Q Consensus 361 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 440 (631)
++|++|++.++....... ...+++|+.|++++|.-..... ...+++|+.|+++++... +.. .+..+
T Consensus 155 ~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~-~~~----~~~~~ 220 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP-----LASLTSLHYFTAYVNQIT-DIT----PVANM 220 (347)
T ss_dssp TTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG-----GGGCTTCCEEECCSSCCC-CCG----GGGGC
T ss_pred CCCcEEEecCCCcCCchh----hccCCCCCEEEccCCccccccc-----ccCCCccceeecccCCCC-CCc----hhhcC
Confidence 778888877754322221 3467788888887765222222 122378888888875432 221 14567
Q ss_pred CCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcC
Q 006794 441 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 520 (631)
Q Consensus 441 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 520 (631)
++|++|++++|....... ...+++|++|+++++ .+++. ..+..++ +|++|++++| .+++. ..+. .+
T Consensus 221 ~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~---~~~~~l~-~L~~L~l~~n-~l~~~--~~~~--~l 286 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTN-QISDI---NAVKDLT-KLKMLNVGSN-QISDI--SVLN--NL 286 (347)
T ss_dssp TTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCCC---GGGTTCT-TCCEEECCSS-CCCCC--GGGG--GC
T ss_pred CcCCEEEccCCccCCCcc----hhcCCCCCEEECCCC-ccCCC---hhHhcCC-CcCEEEccCC-ccCCC--hhhc--CC
Confidence 888888888875332211 445688999999884 44432 1223334 8999999886 55543 2222 58
Q ss_pred cccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 521 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 521 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
++|+.|++++| .+++.....+.. +++|+.|++++|.+++... +. .+++|++|++++|+
T Consensus 287 ~~L~~L~L~~n-~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~--~~--~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 287 SQLNSLFLNNN-QLGNEDMEVIGG-LTNLTTLFLSQNHITDIRP--LA--SLSKMDSADFANQV 344 (347)
T ss_dssp TTCSEEECCSS-CCCGGGHHHHHT-CTTCSEEECCSSSCCCCGG--GG--GCTTCSEESSSCC-
T ss_pred CCCCEEECcCC-cCCCcChhHhhc-cccCCEEEccCCccccccC--hh--hhhccceeehhhhc
Confidence 99999999995 788777666654 9999999999999887543 33 78899999999976
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=2.9e-19 Score=187.94 Aligned_cols=399 Identities=14% Similarity=0.076 Sum_probs=240.1
Q ss_pred CCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCC
Q 006794 177 PSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRN 256 (631)
Q Consensus 177 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 256 (631)
++|++|+++++ .+....... ...+++|++|+++++ .++.. .+..+..+++|++|+++++ .++.... . .+++
T Consensus 21 ~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~lp~--~--~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQN-YISELWTSD-ILSLSKLRILIISHN-RIQYL-DISVFKFNQELEYLDLSHN-KLVKISC--H--PTVN 91 (520)
T ss_dssp TTCSEEECCSS-CCCCCCHHH-HTTCTTCCEEECCSS-CCCEE-EGGGGTTCTTCCEEECCSS-CCCEEEC--C--CCCC
T ss_pred ccccEEECCCC-cccccChhh-ccccccccEEecCCC-ccCCc-ChHHhhcccCCCEEecCCC-ceeecCc--c--ccCC
Confidence 79999999987 455443333 357999999999995 55541 1233456899999999985 4543111 1 4899
Q ss_pred CcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccccc--cccccCCCCC--C--chhhHHHhh-
Q 006794 257 LQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKAL--TNLVLSDLPN--V--SEKGFWVMG- 329 (631)
Q Consensus 257 L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L--~~L~l~~~~~--~--~~~~~~~~~- 329 (631)
|++|+++++.-.. ..+.......+. |+.|+++++.+....+ ..+++| +.|+++++.. . ....+..+.
T Consensus 92 L~~L~L~~N~l~~-~~~p~~~~~l~~-L~~L~L~~n~l~~~~~----~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 92 LKHLDLSFNAFDA-LPICKEFGNMSQ-LKFLGLSTTHLEKSSV----LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp CSEEECCSSCCSS-CCCCGGGGGCTT-CCEEEEEESSCCGGGG----GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred ccEEeccCCcccc-ccchhhhccCCc-ceEEEecCcccchhhc----cccccceeeEEEeeccccccccccccccccccc
Confidence 9999999876322 111111222333 9999999998877433 234566 8888877643 1 111111100
Q ss_pred -------------------ccccCCCcceEeccCCCC---CC--hHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHH-
Q 006794 330 -------------------NAQGLQKLVSLTIASGGG---VT--DVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSK- 384 (631)
Q Consensus 330 -------------------~~~~~~~L~~L~l~~~~~---~~--~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~- 384 (631)
....+++|+.|+++++.. .. ...+. ....+++|+.|++.++ .+.+..+..+..
T Consensus 166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI-ETTWNSFIRILQL 243 (520)
T ss_dssp EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE-EEEHHHHHHHHHH
T ss_pred ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc-ccCHHHHHHHHHH
Confidence 112467777777776531 00 11111 2345678888888775 454444443332
Q ss_pred -hcCCCCeEeccCCCCCchh--hHHHHHhcccCCCcEEecccccCCCccccccccCC---CCCCCceEeccCCCCCCHHH
Q 006794 385 -AAGSLEILQLEECNRVSQS--GILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLS---PNCSLRSLSIRNCPGFGNAS 458 (631)
Q Consensus 385 -~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~ 458 (631)
.+++|+.|++++|.-.... .+.......++.|+.++++++.. .++ ...+. ...+|+.|++++|......
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p--~~~~~~~~~~~~L~~L~l~~n~l~~~~- 318 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFP--QSYIYEIFSNMNIKNFTVSGTRMVHML- 318 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSC--THHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecc--hhhhhcccccCceeEEEcCCCcccccc-
Confidence 2468888888876421110 00000002236777777776543 111 00111 1257999999998643211
Q ss_pred HHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchH-HHHHHHhhcCcccCeecccCCCCCChH
Q 006794 459 LAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDE-VVLALARLHSETLELLNLDGCRKITDA 537 (631)
Q Consensus 459 l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~~L~~L~l~~c~~l~~~ 537 (631)
....+++|++|++++ +.+++..... +..++ +|+.|+++++ .++.. .+..... .+++|++|++++ +.++..
T Consensus 319 ---~~~~l~~L~~L~Ls~-n~l~~~~~~~-~~~l~-~L~~L~L~~N-~l~~l~~~~~~~~-~l~~L~~L~Ls~-N~l~~~ 389 (520)
T 2z7x_B 319 ---CPSKISPFLHLDFSN-NLLTDTVFEN-CGHLT-ELETLILQMN-QLKELSKIAEMTT-QMKSLQQLDISQ-NSVSYD 389 (520)
T ss_dssp ---CCSSCCCCCEEECCS-SCCCTTTTTT-CCCCS-SCCEEECCSS-CCCBHHHHHHHHT-TCTTCCEEECCS-SCCBCC
T ss_pred ---chhhCCcccEEEeEC-CccChhhhhh-hccCC-CCCEEEccCC-ccCccccchHHHh-hCCCCCEEECCC-CcCCcc
Confidence 114679999999998 4555422222 22333 8999999995 66653 2222233 589999999999 577652
Q ss_pred HHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCH
Q 006794 538 SLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINS 614 (631)
Q Consensus 538 ~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~ 614 (631)
........+++|+.|++++|.+++.....+. ++|+.|++++|. ++ .++.....+++|++|++++| +++.
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----~~L~~L~Ls~N~-l~--~ip~~~~~l~~L~~L~L~~N-~l~~ 458 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP----PRIKVLDLHSNK-IK--SIPKQVVKLEALQELNVASN-QLKS 458 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC----TTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSS-CCCC
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc----ccCCEEECCCCc-cc--ccchhhhcCCCCCEEECCCC-cCCc
Confidence 2122234589999999999999865443321 699999999975 76 23332236778999999995 6664
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=4.3e-20 Score=201.05 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=18.9
Q ss_pred cCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCC
Q 006794 359 GCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEEC 397 (631)
Q Consensus 359 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 397 (631)
.+++|++|+++++. +.... ...+..+++|++|++++|
T Consensus 327 ~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 327 WLKCLEHLNMEDND-IPGIK-SNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TCTTCCEEECCSCC-BCCCC-TTTTTTCTTCCEEECTTC
T ss_pred cCCCCCEEECCCCc-cCCCC-hhHhccccCCcEEECCCC
Confidence 35666666666642 22111 111234667777777654
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=4.5e-20 Score=200.94 Aligned_cols=89 Identities=20% Similarity=0.141 Sum_probs=49.9
Q ss_pred cCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhh--HHhhhhccCCCccEEeccCCCCCCcchHHHHHH
Q 006794 519 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMG--ISALSHAEQLNLQVLSLSSCSEVSNKSMPALKK 596 (631)
Q Consensus 519 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~--~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 596 (631)
.+++|++|++++| .++......+ ..+++|+.|++++|.++..+ ...+ ..+++|+.|++++|. ++...... ..
T Consensus 428 ~l~~L~~L~Ls~n-~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N~-l~~i~~~~-~~ 501 (680)
T 1ziw_A 428 GLENIFEIYLSYN-KYLQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNNN-IANINDDM-LE 501 (680)
T ss_dssp TCTTCCEEECCSC-SEEECCTTTT-TTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSSC-CCCCCTTT-TT
T ss_pred CcccccEEecCCC-CcceeChhhh-hcCcccccchhccccccccccCCccc--ccCCCCCEEECCCCC-CCcCChhh-hc
Confidence 3566666666663 3332221122 23666777777766654321 1122 267788888888864 65433222 34
Q ss_pred hcCcccccccccccCCCH
Q 006794 597 LGKTLVGLNLQNCNSINS 614 (631)
Q Consensus 597 ~~~~L~~L~l~~c~~l~~ 614 (631)
.+++|++|++++ +.++.
T Consensus 502 ~l~~L~~L~Ls~-N~l~~ 518 (680)
T 1ziw_A 502 GLEKLEILDLQH-NNLAR 518 (680)
T ss_dssp TCTTCCEEECCS-SCCGG
T ss_pred cccccCEEeCCC-CCccc
Confidence 466799999998 45554
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=5.5e-20 Score=195.02 Aligned_cols=403 Identities=18% Similarity=0.152 Sum_probs=226.1
Q ss_pred CCCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHh
Q 006794 147 HGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAE 226 (631)
Q Consensus 147 ~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 226 (631)
.++|++|+++++ .+.......+ ..+++|++|+++++ .+...........+++|++|+++++..+.... .....
T Consensus 73 l~~L~~L~Ls~n----~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~ 145 (549)
T 2z81_A 73 LGSLEHLDLSDN----HLSSLSSSWF-GPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFA 145 (549)
T ss_dssp CTTCCEEECTTS----CCCSCCHHHH-TTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTT
T ss_pred cccCCEEECCCC----ccCccCHHHh-ccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccC-Hhhhh
Confidence 468888998887 3333333333 35788999998876 34432222233467888888888753233210 11223
Q ss_pred hCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhh------------------------
Q 006794 227 NCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASS------------------------ 282 (631)
Q Consensus 227 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~------------------------ 282 (631)
.+++|++|+++++ .++......+.. +++|++|++..+.... . ...+....+.
T Consensus 146 ~l~~L~~L~L~~n-~l~~~~~~~l~~-l~~L~~L~l~~n~~~~-~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 146 GLTSLNELEIKAL-SLRNYQSQSLKS-IRDIHHLTLHLSESAF-L-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221 (549)
T ss_dssp TCCEEEEEEEEET-TCCEECTTTTTT-CSEEEEEEEECSBSTT-H-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC
T ss_pred cccccCeeeccCC-cccccChhhhhc-cccCceEecccCcccc-c-chhhHhhcccccEEEccCCccccccccccchhhh
Confidence 5777888888764 233222222222 4455555554433110 0 0011111111
Q ss_pred --cccceeccccccchhhHHHHh---hccccccccccCCCCCCc--hhhHHHhhccccCCCcceEeccCCCCCChH----
Q 006794 283 --VLTRVKLQALNITDFSLAVIG---HYGKALTNLVLSDLPNVS--EKGFWVMGNAQGLQKLVSLTIASGGGVTDV---- 351 (631)
Q Consensus 283 --~L~~L~l~~~~l~~~~~~~~~---~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---- 351 (631)
.++.|.+.++.+.+.....+. ..+++|+.+++.++.... +...........+++|+.|.+.++. +...
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~ 300 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFY 300 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSC
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccc-cchhhhcc
Confidence 244444444444444333332 233455555555442111 0000111223445667777766543 2111
Q ss_pred HHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHH-HHHhcccCCCcEEecccccCCCcc
Q 006794 352 SLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGIL-GVVSNSASKLKSLTLVKCMGIKDM 430 (631)
Q Consensus 352 ~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~ 430 (631)
.+..+....++|+.|++.++. +... ...+...+++|+.|+++++. +...... ......+++|+.|++++|. +..+
T Consensus 301 ~l~~~~~~~~~L~~L~l~~n~-l~~i-p~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 376 (549)
T 2z81_A 301 DLSTVYSLLEKVKRITVENSK-VFLV-PCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNH-LRSM 376 (549)
T ss_dssp CCCHHHHHSTTCCEEEEESSC-CCCC-CHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSC-CCCH
T ss_pred cchhhhhhcccceEEEeccCc-cccC-CHHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCc-cccc
Confidence 111222335789999998864 4321 12334578999999999876 4332211 1112345899999999964 3333
Q ss_pred ccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchH
Q 006794 431 ATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDE 510 (631)
Q Consensus 431 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~ 510 (631)
......+..+++|++|++++|. ++. +......+++|+.|+++++ .++.-. ...+++|++|++++| .++..
T Consensus 377 ~~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~~~~L~~L~Ls~N-~l~~l~-----~~~~~~L~~L~Ls~N-~l~~~ 446 (549)
T 2z81_A 377 QKTGEILLTLKNLTSLDISRNT-FHP--MPDSCQWPEKMRFLNLSST-GIRVVK-----TCIPQTLEVLDVSNN-NLDSF 446 (549)
T ss_dssp HHHHHHGGGCTTCCEEECTTCC-CCC--CCSCCCCCTTCCEEECTTS-CCSCCC-----TTSCTTCSEEECCSS-CCSCC
T ss_pred ccchhhhhcCCCCCEEECCCCC-Ccc--CChhhcccccccEEECCCC-Cccccc-----chhcCCceEEECCCC-Chhhh
Confidence 2111224678999999999985 331 1112234689999999984 343211 111238999999996 56542
Q ss_pred HHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCC
Q 006794 511 VVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVS 587 (631)
Q Consensus 511 ~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 587 (631)
. . .+++|++|++++ ++++.. ... ..+++|+.|+|++|.+++.....+. .+++|+.|++++|+...
T Consensus 447 ~-----~-~l~~L~~L~Ls~-N~l~~i--p~~-~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 447 S-----L-FLPRLQELYISR-NKLKTL--PDA-SLFPVLLVMKISRNQLKSVPDGIFD--RLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp C-----C-CCTTCCEEECCS-SCCSSC--CCG-GGCTTCCEEECCSSCCCCCCTTGGG--GCTTCCEEECCSSCBCC
T ss_pred c-----c-cCChhcEEECCC-CccCcC--CCc-ccCccCCEEecCCCccCCcCHHHHh--cCcccCEEEecCCCccC
Confidence 1 2 589999999999 477632 222 3589999999999998875444444 78899999999988443
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=1.5e-20 Score=208.61 Aligned_cols=301 Identities=16% Similarity=0.083 Sum_probs=150.8
Q ss_pred CCCCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHH-HH
Q 006794 146 GHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLI-AI 224 (631)
Q Consensus 146 ~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~-~l 224 (631)
..++|++|+++++.....+....+ ..+++|++|+++++ .+..... ..+..+++|++|+++++ .+++.... ..
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f----~~L~~L~~L~Ls~N-~l~~~~p-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 118 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAF----RNLPNLRILDLGSS-KIYFLHP-DAFQGLFHLFELRLYFC-GLSDAVLKDGY 118 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTT----SSCTTCCEEECTTC-CCCEECT-TSSCSCSSCCCEECTTC-CCSSCCSTTCC
T ss_pred ccccCeEEeCCCCCCccccCHHHh----cCCCCCCEEECCCC-cCcccCH-hHccCCcccCEeeCcCC-CCCcccccCcc
Confidence 346788888887643333322222 45778888888775 3443322 22336788888888875 34321111 11
Q ss_pred HhhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCc--chhhHHHHHhhhhhcccceeccccccchhhHHHH
Q 006794 225 AENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLV--RDQGISSLLSSASSVLTRVKLQALNITDFSLAVI 302 (631)
Q Consensus 225 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~ 302 (631)
...+++|++|+++++. +...........+++|++|+++++.-. ....+..+.. ..|+.|.+..+.+.......+
T Consensus 119 ~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~---~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG---KTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp CSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH---CSSCCCEECCSBSCCCCCCCC
T ss_pred ccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC---CccceEECCCCccccccccch
Confidence 3457888888888753 333222222233888888888876421 1223333221 237777777766554221111
Q ss_pred hhccc------cccccccCCCCCCchhhHHHhhc---------------------------------cc--cCCCcceEe
Q 006794 303 GHYGK------ALTNLVLSDLPNVSEKGFWVMGN---------------------------------AQ--GLQKLVSLT 341 (631)
Q Consensus 303 ~~~~~------~L~~L~l~~~~~~~~~~~~~~~~---------------------------------~~--~~~~L~~L~ 341 (631)
. .++ .|+.|+++++... ......+.. .. ..++|+.|+
T Consensus 195 ~-~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~ 272 (844)
T 3j0a_A 195 G-KCMNPFRNMVLEILDVSGNGWT-VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272 (844)
T ss_dssp C-SSSCTTTTCCBSEEBCSSCCSS-TTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred h-hcCCccccCceeEEecCCCcCc-hhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEE
Confidence 1 111 3677777665211 100000000 00 125677777
Q ss_pred ccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEec
Q 006794 342 IASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTL 421 (631)
Q Consensus 342 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 421 (631)
++++. +.... ......+++|+.|+++++. +..... ..+..+++|+.|+++++. ++.... .....+++|+.|++
T Consensus 273 Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 273 LSHGF-VFSLN-SRVFETLKDLKVLNLAYNK-INKIAD-EAFYGLDNLQVLNLSYNL-LGELYS--SNFYGLPKVAYIDL 345 (844)
T ss_dssp CTTCC-CCEEC-SCCSSSCCCCCEEEEESCC-CCEECT-TTTTTCSSCCEEEEESCC-CSCCCS--CSCSSCTTCCEEEC
T ss_pred CCCCc-ccccC-hhhhhcCCCCCEEECCCCc-CCCCCh-HHhcCCCCCCEEECCCCC-CCccCH--HHhcCCCCCCEEEC
Confidence 76654 32211 1222345777777777652 322111 112356777777777654 211100 00112367777777
Q ss_pred ccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEeccc
Q 006794 422 VKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSG 476 (631)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 476 (631)
++|. +..+. ...+..+++|++|++++|.. +.. ..+++|+.|++++
T Consensus 346 ~~N~-i~~~~--~~~~~~l~~L~~L~Ls~N~l-~~i------~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 346 QKNH-IAIIQ--DQTFKFLEKLQTLDLRDNAL-TTI------HFIPSIPDIFLSG 390 (844)
T ss_dssp CSCC-CCCCC--SSCSCSCCCCCEEEEETCCS-CCC------SSCCSCSEEEEES
T ss_pred CCCC-CCccC--hhhhcCCCCCCEEECCCCCC-Ccc------cCCCCcchhccCC
Confidence 7753 22221 12345577777777777642 210 1146666666665
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=1e-20 Score=201.75 Aligned_cols=421 Identities=17% Similarity=0.103 Sum_probs=236.9
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhh
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 227 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 227 (631)
+.+++|+++++. +.......+ ..+++|++|+++++ .+..... ..+..+++|++|+++++ .++... ...+..
T Consensus 28 ~~l~~L~Ls~n~----l~~~~~~~~-~~l~~L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~ 98 (570)
T 2z63_A 28 FSTKNLDLSFNP----LRHLGSYSF-FSFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGN-PIQSLA-LGAFSG 98 (570)
T ss_dssp SSCCEEECCSCC----CCEECTTTT-TTCSSCCEEECTTC-CCCEECT-TTTTTCTTCCEEECTTC-CCCEEC-TTTTTT
T ss_pred ccccEEEccCCc----cCccChhHh-hCCCCceEEECCCC-cCCccCc-ccccCchhCCEEeCcCC-cCCccC-HhhhcC
Confidence 579999999873 332221122 36899999999987 4554322 22347899999999985 454311 123346
Q ss_pred CCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccc
Q 006794 228 CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGK 307 (631)
Q Consensus 228 l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 307 (631)
+++|++|++.++. +.......+.. +++|++|+++++.-.. ..+.......+. |+.|+++++.+.......+. .++
T Consensus 99 l~~L~~L~L~~n~-l~~l~~~~~~~-l~~L~~L~L~~n~l~~-~~lp~~~~~l~~-L~~L~l~~n~l~~~~~~~~~-~l~ 173 (570)
T 2z63_A 99 LSSLQKLVAVETN-LASLENFPIGH-LKTLKELNVAHNLIQS-FKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLR-VLH 173 (570)
T ss_dssp CTTCCEEECTTSC-CCCSTTCSCTT-CTTCCEEECCSSCCCC-CCCCGGGGGCTT-CCEEECTTSCCCEECGGGGH-HHH
T ss_pred ccccccccccccc-cccCCCccccc-cccccEEecCCCccce-ecChhhhcccCC-CCEEeCcCCccceecHHHcc-chh
Confidence 8999999999753 43322112333 8999999999875321 111111222333 99999999887764322221 223
Q ss_pred cc----cccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHh--------------------------
Q 006794 308 AL----TNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMG-------------------------- 357 (631)
Q Consensus 308 ~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-------------------------- 357 (631)
+| ..|+++++.... .....+ ...+|+.|++.++.. ....+....
T Consensus 174 ~L~~~~~~L~l~~n~l~~-~~~~~~----~~~~L~~L~l~~n~~-~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNF-IQPGAF----KEIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp TCTTCCCEEECTTCCCCE-ECTTTT----TTCEEEEEEEESCCS-CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred ccchhhhhcccCCCCcee-cCHHHh----ccCcceeEecccccc-cccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 44 677777663211 111111 123577777766421 111111111
Q ss_pred -------------------------------hcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHH
Q 006794 358 -------------------------------KGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGIL 406 (631)
Q Consensus 358 -------------------------------~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~ 406 (631)
..+++|++|++.++. +.. +......+ +|++|++++|.. .....
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~--l~~~~~~~-~L~~L~l~~n~~-~~l~~- 321 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IER--VKDFSYNF-GWQHLELVNCKF-GQFPT- 321 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECS--CCBCCSCC-CCSEEEEESCBC-SSCCB-
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chh--hhhhhccC-CccEEeeccCcc-cccCc-
Confidence 223455555554432 110 11111123 555555555432 11111
Q ss_pred HHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhH
Q 006794 407 GVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIF 486 (631)
Q Consensus 407 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~ 486 (631)
..+++|+.|+++++....... ...+++|++|++++|..............+++|+.|+++++ .++.....
T Consensus 322 ----~~l~~L~~L~l~~n~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~ 391 (570)
T 2z63_A 322 ----LKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN 391 (570)
T ss_dssp ----CBCSSCCEEEEESCBSCCBCC-----CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE
T ss_pred ----ccccccCEEeCcCCccccccc-----cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC-cccccccc
Confidence 133677777777765333221 15688899999988763221100112235689999999884 33321111
Q ss_pred HHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHh
Q 006794 487 PLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISA 566 (631)
Q Consensus 487 ~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~ 566 (631)
+..++ +|++|+++++ .+.......... .+++|++|++++| .++...... ...+++|+.|++++|.+++..+..
T Consensus 392 --~~~l~-~L~~L~l~~n-~l~~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~p~ 464 (570)
T 2z63_A 392 --FLGLE-QLEHLDFQHS-NLKQMSEFSVFL-SLRNLIYLDISHT-HTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPD 464 (570)
T ss_dssp --EETCT-TCCEEECTTS-EEESCTTSCTTT-TCTTCCEEECTTS-CCEECCTTT-TTTCTTCCEEECTTCEEGGGEECS
T ss_pred --ccccC-CCCEEEccCC-ccccccchhhhh-cCCCCCEEeCcCC-cccccchhh-hhcCCcCcEEECcCCcCccccchh
Confidence 22344 8999999885 333221111112 5789999999995 555433222 245899999999999987432222
Q ss_pred hhhccCCCccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCHH
Q 006794 567 LSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSS 615 (631)
Q Consensus 567 l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~ 615 (631)
.. ..+++|+.|++++|. ++......+ ..+++|++|++++| +++..
T Consensus 465 ~~-~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~ 509 (570)
T 2z63_A 465 IF-TELRNLTFLDLSQCQ-LEQLSPTAF-NSLSSLQVLNMASN-QLKSV 509 (570)
T ss_dssp CC-TTCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSS-CCSCC
T ss_pred hh-hcccCCCEEECCCCc-cccCChhhh-hcccCCCEEeCCCC-cCCCC
Confidence 22 378899999999975 765433333 35678999999995 56543
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=3.1e-19 Score=194.49 Aligned_cols=325 Identities=13% Similarity=0.047 Sum_probs=172.1
Q ss_pred CCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccc-cch-hhHHHHh------hccccccccccCCCCCCchhhH
Q 006794 254 CRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALN-ITD-FSLAVIG------HYGKALTNLVLSDLPNVSEKGF 325 (631)
Q Consensus 254 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~-l~~-~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~ 325 (631)
+++|++|++++|....... ......+. |+.|+++++. +++ .....+. ..+++|+.|+++++.... +
T Consensus 490 L~~L~~L~Ls~N~l~~~iP--~~l~~L~~-L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~---i 563 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLP--DFLYDLPE-LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE---F 563 (876)
T ss_dssp CTTCCEEEEESCTTCCSCC--GGGGGCSS-CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB---C
T ss_pred CCCCCEEECcCCCCCccCh--HHHhCCCC-CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc---c
Confidence 5566666665554222111 11111222 5556666655 544 2222221 123567777776663221 1
Q ss_pred HHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCC-CCeEeccCCCCCchhh
Q 006794 326 WVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGS-LEILQLEECNRVSQSG 404 (631)
Q Consensus 326 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~ 404 (631)
.....+..+++|+.|+++++. +... . ....+++|+.|+++++. +. .+...+..+++ |+.|++++|. ++...
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~-l~~l--p-~~~~L~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~-L~~lp 635 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNK-VRHL--E-AFGTNVKLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNK-LKYIP 635 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSC-CCBC--C-CCCTTSEESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSC-CCSCC
T ss_pred CChhhhhcCCCCCEEECCCCC-cccc--h-hhcCCCcceEEECcCCc-cc--cchHHHhhccccCCEEECcCCC-CCcCc
Confidence 100123456778888887765 4422 2 23456788888887753 32 12222335666 8888888765 32211
Q ss_pred HHHHHh-cccCCCcEEecccccCCCccccccccCC--CCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCC
Q 006794 405 ILGVVS-NSASKLKSLTLVKCMGIKDMATEMPMLS--PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGIT 481 (631)
Q Consensus 405 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~ 481 (631)
..+. ...++|+.|++++|......+....... ..++|+.|++++|.. ... ...+...+++|+.|+++++ .++
T Consensus 636 --~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~~l-p~~~~~~l~~L~~L~Ls~N-~L~ 710 (876)
T 4ecn_A 636 --NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-QKF-PTELFATGSPISTIILSNN-LMT 710 (876)
T ss_dssp --SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-CSC-CHHHHHTTCCCSEEECCSC-CCS
T ss_pred --hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-Ccc-CHHHHccCCCCCEEECCCC-cCC
Confidence 1111 1113488888888754433222111222 345888888888753 321 1333445688888888873 443
Q ss_pred c---hhhHHH---HhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEec
Q 006794 482 D---VGIFPL---LESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVS 555 (631)
Q Consensus 482 ~---~~~~~l---~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~ 555 (631)
. ..+... ...++ +|+.|+|++| .++... ..+....+++|+.|+|++ +.++. +..-...+++|+.|+|+
T Consensus 711 ~ip~~~~~~~~~~l~nl~-~L~~L~Ls~N-~L~~lp-~~l~~~~l~~L~~L~Ls~-N~L~~--lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTY-LLTTIDLRFN-KLTSLS-DDFRATTLPYLSNMDVSY-NCFSS--FPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp CCCTTSSSCTTSCCTTGG-GCCEEECCSS-CCCCCC-GGGSTTTCTTCCEEECCS-SCCSS--CCCGGGGCTTCCEEECC
T ss_pred ccChHHhccccccccccC-CccEEECCCC-CCccch-HHhhhccCCCcCEEEeCC-CCCCc--cchhhhcCCCCCEEECC
Confidence 1 111100 11222 7888888885 555221 112201468888888888 46665 22122358888888887
Q ss_pred C------CccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCccccccccccc
Q 006794 556 K------CAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCN 610 (631)
Q Consensus 556 ~------~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~ 610 (631)
+ |.+.......+. .+++|+.|++++|. ++. ++. ..+++|+.|+|++|+
T Consensus 785 ~N~~ls~N~l~~~ip~~l~--~L~~L~~L~Ls~N~-L~~--Ip~--~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPTGIT--TCPSLIQLQIGSND-IRK--VDE--KLTPQLYILDIADNP 838 (876)
T ss_dssp CCBCTTCCBCCCCCCTTGG--GCSSCCEEECCSSC-CCB--CCS--CCCSSSCEEECCSCT
T ss_pred CCCCcccccccccChHHHh--cCCCCCEEECCCCC-CCc--cCH--hhcCCCCEEECCCCC
Confidence 6 445443333444 67788888888875 532 222 134678888888854
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=1.1e-18 Score=185.13 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=73.9
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhh
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 227 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 227 (631)
+++++|+++++. +..+....+ ..+++|++|+++++ .++.... ..+..+++|++|+++++ .++. ++.. .
T Consensus 52 ~~L~~L~Ls~N~-i~~~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~--lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELRMPDI----SFLSELRVLRLSHN-RIRSLDF-HVFLFNQDLEYLDVSHN-RLQN--ISCC--P 119 (562)
T ss_dssp TTCCEEECCSSC-CCCCCGGGT----TTCTTCCEEECCSC-CCCEECT-TTTTTCTTCCEEECTTS-CCCE--ECSC--C
T ss_pred CCcCEEECCCCC-ccccChhhh----ccCCCccEEECCCC-CCCcCCH-HHhCCCCCCCEEECCCC-cCCc--cCcc--c
Confidence 678888888773 222322222 35788888888876 4543322 22336788888888874 4542 2222 5
Q ss_pred CCCCcEEeecCCCCCChhHH-HHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceecccccc
Q 006794 228 CPNLTSLNIESCSKIGNDGL-QAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNI 294 (631)
Q Consensus 228 l~~L~~L~l~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l 294 (631)
+++|++|+++++ .++...+ ..+.. +++|++|+++++. +....+..+... .++.|+++++.+
T Consensus 120 l~~L~~L~Ls~N-~l~~l~~p~~~~~-l~~L~~L~L~~n~-l~~~~~~~l~~L---~L~~L~L~~n~l 181 (562)
T 3a79_B 120 MASLRHLDLSFN-DFDVLPVCKEFGN-LTKLTFLGLSAAK-FRQLDLLPVAHL---HLSCILLDLVSY 181 (562)
T ss_dssp CTTCSEEECCSS-CCSBCCCCGGGGG-CTTCCEEEEECSB-CCTTTTGGGTTS---CEEEEEEEESSC
T ss_pred cccCCEEECCCC-CccccCchHhhcc-cCcccEEecCCCc-cccCchhhhhhc---eeeEEEeecccc
Confidence 788888888875 3443222 23334 7888888888754 332222221110 137777776655
No 30
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=1.7e-16 Score=159.73 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=82.8
Q ss_pred CCCcEEecccccCCCchhhHHHH---hhcccCccEEecCCCCCCchHHHHHHHh---hcCcccCeecccCCCCCChHHHH
Q 006794 467 PQLQHVDLSGLYGITDVGIFPLL---ESCKAGLVKVNLSGCLNLTDEVVLALAR---LHSETLELLNLDGCRKITDASLV 540 (631)
Q Consensus 467 ~~L~~L~l~~~~~l~~~~~~~l~---~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~~L~~L~l~~c~~l~~~~~~ 540 (631)
++|++|++++ +.+++.++..+. ..++ +|++|++++| .+++.++..+.. ..+++|+.|+|++ +.+++.+..
T Consensus 159 ~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~-n~l~~~g~~ 234 (386)
T 2ca6_A 159 PPLRSIICGR-NRLENGSMKEWAKTFQSHR-LLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQD-NTFTHLGSS 234 (386)
T ss_dssp CCCCEEECCS-SCCTGGGHHHHHHHHHHCT-TCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCS-SCCHHHHHH
T ss_pred CCCcEEECCC-CCCCcHHHHHHHHHHHhCC-CcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcC-CCCCcHHHH
Confidence 6666776666 455555554332 2333 6677777664 555554333221 1356677777766 356554443
Q ss_pred HHH---hcCCcCCEEEecCCccChhhHHhhhh----ccCCCccEEeccCCCCCCcchH----HHHHHhcCcccccccccc
Q 006794 541 AIG---NNCMFLSYLDVSKCAITDMGISALSH----AEQLNLQVLSLSSCSEVSNKSM----PALKKLGKTLVGLNLQNC 609 (631)
Q Consensus 541 ~l~---~~~~~L~~L~L~~~~l~~~~~~~l~~----~~~~~L~~L~l~~c~~l~~~~~----~~l~~~~~~L~~L~l~~c 609 (631)
.+. ..+++|+.|+|++|.+++.+...+.. ..+++|++|++++|. +++.++ ..+...+++|+.|++++
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~- 312 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNG- 312 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTT-
T ss_pred HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccC-
Confidence 332 34666777777777666655444331 125667777776654 555322 22223356677777776
Q ss_pred cCCCHHH--HHHHHhhccc
Q 006794 610 NSINSST--VARLVESLWR 626 (631)
Q Consensus 610 ~~l~~~~--~~~l~~~l~~ 626 (631)
+.++..+ +..+.+.+++
T Consensus 313 N~l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 313 NRFSEEDDVVDEIREVFST 331 (386)
T ss_dssp SBSCTTSHHHHHHHHHHHH
T ss_pred CcCCcchhHHHHHHHHhhh
Confidence 3455444 4555555544
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=2.2e-18 Score=178.13 Aligned_cols=366 Identities=13% Similarity=0.062 Sum_probs=167.9
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhh
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 227 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 227 (631)
+++++|+++++. +.......+ ..+++|++|+++++. +........+..+++|++|+++++ .++... +..+..
T Consensus 30 ~~l~~L~Ls~n~----i~~~~~~~~-~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~ 101 (455)
T 3v47_A 30 AHVNYVDLSLNS----IAELNETSF-SRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYN-QFLQLE-TGAFNG 101 (455)
T ss_dssp TTCCEEECCSSC----CCEECTTTT-SSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTC-TTCEEC-TTTTTT
T ss_pred CccCEEEecCCc----cCcCChhHh-ccCccccEEECcCCc-ccceECcccccccccCCEEeCCCC-ccCccC-hhhccC
Confidence 578888888763 332211112 357788888887763 221111122336788888888874 343211 122345
Q ss_pred CCCCcEEeecCCCCCChhHHHH--HhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhc
Q 006794 228 CPNLTSLNIESCSKIGNDGLQA--IGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHY 305 (631)
Q Consensus 228 l~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 305 (631)
+++|++|+++++ .++...+.. +.. +++|++|+++++.-. ......+....+. |+.|+++++.+.......+..
T Consensus 102 l~~L~~L~L~~n-~l~~~~~~~~~~~~-l~~L~~L~L~~n~l~-~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~- 176 (455)
T 3v47_A 102 LANLEVLTLTQC-NLDGAVLSGNFFKP-LTSLEMLVLRDNNIK-KIQPASFFLNMRR-FHVLDLTFNKVKSICEEDLLN- 176 (455)
T ss_dssp CTTCCEEECTTS-CCBTHHHHSSTTTT-CTTCCEEECCSSBCC-SCCCCGGGGGCTT-CCEEECTTCCBSCCCTTTSGG-
T ss_pred cccCCEEeCCCC-CCCccccCcccccC-cccCCEEECCCCccC-ccCcccccCCCCc-ccEEeCCCCcccccChhhhhc-
Confidence 788888888875 344333332 333 778888888776521 1110011111111 444444444443322111111
Q ss_pred cccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHH-----HHH--HhhcCCCcCeEEcCCCCCCCHHH
Q 006794 306 GKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVS-----LEA--MGKGCLNLKQMCLRKCCFVSDNG 378 (631)
Q Consensus 306 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~--l~~~~~~L~~L~l~~~~~~~~~~ 378 (631)
+ ...+|+.|+++++. +.... ... ....+++|++|+++++ .+....
T Consensus 177 ----------------------l----~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~ 228 (455)
T 3v47_A 177 ----------------------F----QGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESM 228 (455)
T ss_dssp ----------------------G----TTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHH
T ss_pred ----------------------c----ccccccccccccCc-ccccchhhccccccccccccceeeeEecCCC-cccccc
Confidence 0 11345555555543 11100 000 0112356666666664 344433
Q ss_pred HHHHHHh--cCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCH
Q 006794 379 LVAFSKA--AGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGN 456 (631)
Q Consensus 379 l~~l~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 456 (631)
...+... .++|+.|+++++......... .. +.+...........++|++|++++|.. ..
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~-----------~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~ 289 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGH-------TN-----------FKDPDNFTFKGLEASGVKTCDLSKSKI-FA 289 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCTTC-------CS-----------SCCCCTTTTGGGTTSCCCEEECCSSCC-CE
T ss_pred hhhhhccccccceeeEeeccccccccccch-------hh-----------hccCcccccccccccCceEEEecCccc-cc
Confidence 3333322 255666666654321110000 00 000000000000123445555544431 11
Q ss_pred HHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCCh
Q 006794 457 ASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITD 536 (631)
Q Consensus 457 ~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~ 536 (631)
.. ......+++|+.|++++ +.+++..... +..++ +|++|+++++ .++......+. .+++|++|++++ +.++.
T Consensus 290 ~~-~~~~~~l~~L~~L~Ls~-n~l~~~~~~~-~~~l~-~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~ 361 (455)
T 3v47_A 290 LL-KSVFSHFTDLEQLTLAQ-NEINKIDDNA-FWGLT-HLLKLNLSQN-FLGSIDSRMFE--NLDKLEVLDLSY-NHIRA 361 (455)
T ss_dssp EC-TTTTTTCTTCCEEECTT-SCCCEECTTT-TTTCT-TCCEEECCSS-CCCEECGGGGT--TCTTCCEEECCS-SCCCE
T ss_pred cc-hhhcccCCCCCEEECCC-CcccccChhH-hcCcc-cCCEEECCCC-ccCCcChhHhc--CcccCCEEECCC-Ccccc
Confidence 10 01112335555555555 2232211111 11122 5666666664 34332222222 367788888877 46655
Q ss_pred HHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 537 ASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 537 ~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
.....+. .+++|+.|+|++|.++......+. .+++|+.|++++|+
T Consensus 362 ~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 362 LGDQSFL-GLPNLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTNP 406 (455)
T ss_dssp ECTTTTT-TCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred cChhhcc-ccccccEEECCCCccccCCHhHhc--cCCcccEEEccCCC
Confidence 4333333 478888888888877764433333 67788888888865
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=3.1e-19 Score=191.28 Aligned_cols=274 Identities=12% Similarity=0.020 Sum_probs=134.9
Q ss_pred ccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCC-hHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHh
Q 006794 307 KALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVT-DVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKA 385 (631)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~ 385 (631)
++|+.|+++++.... +.....+..+++|++|+++++. +. ..+ ....+++|++|+++++. +. .+...+..
T Consensus 305 ~~L~~L~L~~n~l~~---ip~~~~l~~l~~L~~L~L~~N~-l~g~ip---~~~~l~~L~~L~L~~N~-l~--~lp~~l~~ 374 (636)
T 4eco_A 305 EKIQIIYIGYNNLKT---FPVETSLQKMKKLGMLECLYNQ-LEGKLP---AFGSEIKLASLNLAYNQ-IT--EIPANFCG 374 (636)
T ss_dssp GTCCEEECCSSCCSS---CCCHHHHTTCTTCCEEECCSCC-CEEECC---CCEEEEEESEEECCSSE-EE--ECCTTSEE
T ss_pred CCCCEEECCCCcCCc---cCchhhhccCCCCCEEeCcCCc-Cccchh---hhCCCCCCCEEECCCCc-cc--cccHhhhh
Confidence 566666666553221 0000012345667777776654 32 211 22344667777776642 22 11111234
Q ss_pred cCC-CCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccc----cCCCCCCCceEeccCCCCCCHHHHH
Q 006794 386 AGS-LEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMP----MLSPNCSLRSLSIRNCPGFGNASLA 460 (631)
Q Consensus 386 ~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~l~ 460 (631)
+++ |+.|+++++. ++.... .+....+++|+.|++++|......+.... ....+++|++|++++|. ++.. ..
T Consensus 375 l~~~L~~L~Ls~N~-l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~l-p~ 450 (636)
T 4eco_A 375 FTEQVENLSFAHNK-LKYIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKF-PK 450 (636)
T ss_dssp ECTTCCEEECCSSC-CSSCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSC-CT
T ss_pred hcccCcEEEccCCc-Ccccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcC-CH
Confidence 566 7777777654 221110 00001123677777777654332211111 01145677888887765 2211 12
Q ss_pred HHhhcCCCCcEEecccccCCCc---hhhHHH---HhhcccCccEEecCCCCCCchHHHHHHH-hhcCcccCeecccCCCC
Q 006794 461 MLGKLCPQLQHVDLSGLYGITD---VGIFPL---LESCKAGLVKVNLSGCLNLTDEVVLALA-RLHSETLELLNLDGCRK 533 (631)
Q Consensus 461 ~l~~~~~~L~~L~l~~~~~l~~---~~~~~l---~~~~~~~L~~L~l~~c~~l~~~~~~~l~-~~~~~~L~~L~l~~c~~ 533 (631)
.+...+++|+.|+++++ .++. ..+... ...++ +|+.|+++++ .++... ..+. . .+++|+.|++++ +.
T Consensus 451 ~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~-~L~~L~Ls~N-~l~~lp-~~~~~~-~l~~L~~L~Ls~-N~ 524 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTY-LLTSIDLRFN-KLTKLS-DDFRAT-TLPYLVGIDLSY-NS 524 (636)
T ss_dssp HHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGG-GCCEEECCSS-CCCBCC-GGGSTT-TCTTCCEEECCS-SC
T ss_pred HHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccC-CccEEECcCC-cCCccC-hhhhhc-cCCCcCEEECCC-CC
Confidence 23334577888888773 3331 111100 01111 6778888774 444221 1121 1 367788888877 46
Q ss_pred CChHHHHHHHhcCCcCCEEEecC------CccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCcccccccc
Q 006794 534 ITDASLVAIGNNCMFLSYLDVSK------CAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQ 607 (631)
Q Consensus 534 l~~~~~~~l~~~~~~L~~L~L~~------~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~ 607 (631)
++.. ...+ ..+++|+.|+|++ |.+.......+. .+++|+.|++++|. ++.. +. ...++|+.|+++
T Consensus 525 l~~i-p~~~-~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~-l~~i--p~--~~~~~L~~L~Ls 595 (636)
T 4eco_A 525 FSKF-PTQP-LNSSTLKGFGIRNQRDAQGNRTLREWPEGIT--LCPSLTQLQIGSND-IRKV--NE--KITPNISVLDIK 595 (636)
T ss_dssp CSSC-CCGG-GGCSSCCEEECCSCBCTTCCBCCCCCCTTGG--GCSSCCEEECCSSC-CCBC--CS--CCCTTCCEEECC
T ss_pred CCCc-Chhh-hcCCCCCEEECCCCcccccCcccccChHHHh--cCCCCCEEECCCCc-CCcc--CH--hHhCcCCEEECc
Confidence 6541 1222 3477888888843 444443333333 56778888888765 4322 21 123678888888
Q ss_pred cc
Q 006794 608 NC 609 (631)
Q Consensus 608 ~c 609 (631)
+|
T Consensus 596 ~N 597 (636)
T 4eco_A 596 DN 597 (636)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=1.9e-18 Score=178.61 Aligned_cols=364 Identities=15% Similarity=0.058 Sum_probs=201.7
Q ss_pred CCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCC
Q 006794 177 PSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRN 256 (631)
Q Consensus 177 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 256 (631)
++|++|+++++ .+...... .+..+++|++|+++++. +........+..+++|++|+++++ .++......+.. +++
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNET-SFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNG-LAN 104 (455)
T ss_dssp TTCCEEECCSS-CCCEECTT-TTSSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTT-CTT
T ss_pred CccCEEEecCC-ccCcCChh-HhccCccccEEECcCCc-ccceECcccccccccCCEEeCCCC-ccCccChhhccC-ccc
Confidence 57788888765 34432221 22366777777777642 221000122334677777777764 333322222333 566
Q ss_pred CcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCC
Q 006794 257 LQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQK 336 (631)
Q Consensus 257 L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 336 (631)
|++|++++|.- .+..+ ....+..+++
T Consensus 105 L~~L~L~~n~l---------------------------~~~~~---------------------------~~~~~~~l~~ 130 (455)
T 3v47_A 105 LEVLTLTQCNL---------------------------DGAVL---------------------------SGNFFKPLTS 130 (455)
T ss_dssp CCEEECTTSCC---------------------------BTHHH---------------------------HSSTTTTCTT
T ss_pred CCEEeCCCCCC---------------------------Ccccc---------------------------CcccccCccc
Confidence 66666665431 11000 0001134578
Q ss_pred cceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHH-hcCCCCeEeccCCCCCchh--hHHH-HH--h
Q 006794 337 LVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSK-AAGSLEILQLEECNRVSQS--GILG-VV--S 410 (631)
Q Consensus 337 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~~~~~~--~~~~-~~--~ 410 (631)
|++|+++++. +.......+...+++|++|+++++. +.......+.. ..++|+.|+++++...... .+.. .. .
T Consensus 131 L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 131 LEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208 (455)
T ss_dssp CCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred CCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence 8888888775 4332222334567899999998864 22211111110 1267788888775422111 0000 00 0
Q ss_pred cccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHH---------H-HHHHhhcCCCCcEEecccccCC
Q 006794 411 NSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNA---------S-LAMLGKLCPQLQHVDLSGLYGI 480 (631)
Q Consensus 411 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---------~-l~~l~~~~~~L~~L~l~~~~~l 480 (631)
...++|+.|++++|................++|+.|+++++...... . ........++|+.|++++ +.+
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l 287 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK-SKI 287 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS-SCC
T ss_pred cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC-ccc
Confidence 12267888888886543322221111223477888888776322100 0 000001236899999988 444
Q ss_pred CchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccC
Q 006794 481 TDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAIT 560 (631)
Q Consensus 481 ~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~ 560 (631)
+... ...+..++ +|++|+++++ .++......+. .+++|++|++++ +.++......+ ..+++|++|+|++|.++
T Consensus 288 ~~~~-~~~~~~l~-~L~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 288 FALL-KSVFSHFT-DLEQLTLAQN-EINKIDDNAFW--GLTHLLKLNLSQ-NFLGSIDSRMF-ENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp CEEC-TTTTTTCT-TCCEEECTTS-CCCEECTTTTT--TCTTCCEEECCS-SCCCEECGGGG-TTCTTCCEEECCSSCCC
T ss_pred cccc-hhhcccCC-CCCEEECCCC-cccccChhHhc--CcccCCEEECCC-CccCCcChhHh-cCcccCCEEECCCCccc
Confidence 4321 12223344 8999999985 55544333333 478999999999 47765543333 45899999999999988
Q ss_pred hhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCC
Q 006794 561 DMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSIN 613 (631)
Q Consensus 561 ~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~ 613 (631)
+.....+. .+++|++|++++|. ++..... ....+++|++|++++++--.
T Consensus 361 ~~~~~~~~--~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 361 ALGDQSFL--GLPNLKELALDTNQ-LKSVPDG-IFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp EECTTTTT--TCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSCBCC
T ss_pred ccChhhcc--ccccccEEECCCCc-cccCCHh-HhccCCcccEEEccCCCccc
Confidence 76555555 78899999999965 7653322 23456789999999955433
No 34
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=9.9e-16 Score=154.20 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=22.8
Q ss_pred CcccCeecccCCCCCChHHHHHHH----hcCCcCCEEEecCCccChhh
Q 006794 520 SETLELLNLDGCRKITDASLVAIG----NNCMFLSYLDVSKCAITDMG 563 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~----~~~~~L~~L~L~~~~l~~~~ 563 (631)
+++|+.|+|++ +.+++.++..+. ..+++|+.|++++|.+++.+
T Consensus 273 ~~~L~~L~L~~-n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 273 NIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCeEEEECcC-CcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 45666666666 355554333222 33566666666666655544
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=1.1e-19 Score=201.72 Aligned_cols=429 Identities=15% Similarity=0.066 Sum_probs=225.7
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhh
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 227 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 227 (631)
+.+++|+++++. +..+....+ ..+++|++|+++++....... ...+..+++|++|+|+++ .+... .+..+..
T Consensus 24 ~~l~~LdLs~N~-i~~i~~~~~----~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N-~l~~~-~p~~~~~ 95 (844)
T 3j0a_A 24 NTTERLLLSFNY-IRTVTASSF----PFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSS-KIYFL-HPDAFQG 95 (844)
T ss_dssp TTCCEEEEESCC-CCEECSSSC----SSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTC-CCCEE-CTTSSCS
T ss_pred CCcCEEECCCCc-CCccChhHC----cccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCC-cCccc-CHhHccC
Confidence 689999999873 222222222 468999999999874333221 122347899999999985 45431 1233456
Q ss_pred CCCCcEEeecCCCCCChhHHHH-HhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhc-
Q 006794 228 CPNLTSLNIESCSKIGNDGLQA-IGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHY- 305 (631)
Q Consensus 228 l~~L~~L~l~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~- 305 (631)
+++|++|+++++ .+++..+.. ....+++|++|+++++.-.. ..........+. |+.|+++++.+.......+...
T Consensus 96 l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~L~~-L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 96 LFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRS-LYLHPSFGKLNS-LKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp CSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCC-CCCCGGGGTCSS-CCEEEEESSCCCCCCSGGGHHHH
T ss_pred CcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccc-cccchhHhhCCC-CCEEECCCCcCCeeCHHHccccc
Confidence 899999999986 444322222 12348999999999876322 111111223333 9999999988765432222211
Q ss_pred cccccccccCCCCCCchhhH--HHhhccccCCCcceEeccCCCCCChHHHHHHh--------------------------
Q 006794 306 GKALTNLVLSDLPNVSEKGF--WVMGNAQGLQKLVSLTIASGGGVTDVSLEAMG-------------------------- 357 (631)
Q Consensus 306 ~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-------------------------- 357 (631)
.++|+.|+++.+........ ...........|+.|+++++. +.......+.
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 27899999987743221110 000000111248999998763 2111111110
Q ss_pred ---------h--cCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccC
Q 006794 358 ---------K--GCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMG 426 (631)
Q Consensus 358 ---------~--~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 426 (631)
. ..++|+.|+++++. +.... ...+..+++|+.|+++++. ++.... .....+++|+.|++++|..
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-i~~~~~--~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGF-VFSLN-SRVFETLKDLKVLNLAYNK-INKIAD--EAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCC-CCEEC-SCCSSSCCCCCEEEEESCC-CCEECT--TTTTTCSSCCEEEEESCCC
T ss_pred cCCCChhhhhccccCCccEEECCCCc-ccccC-hhhhhcCCCCCEEECCCCc-CCCCCh--HHhcCCCCCCEEECCCCCC
Confidence 0 12578888887753 22211 1122356888888888764 222110 0112237888888888643
Q ss_pred CCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCC-
Q 006794 427 IKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCL- 505 (631)
Q Consensus 427 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~- 505 (631)
. .+ ....+..+++|+.|++++|. +...... ....+++|+.|+++++ .++.-.. . ++|+.|.++++.
T Consensus 327 ~-~~--~~~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i~~------~-~~L~~L~l~~N~l 393 (844)
T 3j0a_A 327 G-EL--YSSNFYGLPKVAYIDLQKNH-IAIIQDQ-TFKFLEKLQTLDLRDN-ALTTIHF------I-PSIPDIFLSGNKL 393 (844)
T ss_dssp S-CC--CSCSCSSCTTCCEEECCSCC-CCCCCSS-CSCSCCCCCEEEEETC-CSCCCSS------C-CSCSEEEEESCCC
T ss_pred C-cc--CHHHhcCCCCCCEEECCCCC-CCccChh-hhcCCCCCCEEECCCC-CCCcccC------C-CCcchhccCCCCc
Confidence 2 21 12345678889999998875 3221111 1234688999999883 4432111 1 155555555431
Q ss_pred ------------------CCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhH---
Q 006794 506 ------------------NLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGI--- 564 (631)
Q Consensus 506 ------------------~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~--- 564 (631)
.++......... .+++|+.|++++ +.++..........+++|+.|++++|.++....
T Consensus 394 ~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~-~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~ 471 (844)
T 3j0a_A 394 VTLPKINLTANLIHLSENRLENLDILYFLL-RVPHLQILILNQ-NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471 (844)
T ss_dssp CCCCCCCTTCCEEECCSCCCCSSTTHHHHT-TCTTCCEEEEES-CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC
T ss_pred ccccccccccceeecccCccccCchhhhhh-cCCccceeeCCC-CcccccccccccccCCccccccCCCCcccccccccc
Confidence 222211111111 345555555555 244321111111224555555555555432110
Q ss_pred --HhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCC
Q 006794 565 --SALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSIN 613 (631)
Q Consensus 565 --~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~ 613 (631)
..+ ..+++|+.|++++|. ++...... ...+++|+.|++++ ++++
T Consensus 472 ~~~~~--~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~-N~l~ 517 (844)
T 3j0a_A 472 CWDVF--EGLSHLQVLYLNHNY-LNSLPPGV-FSHLTALRGLSLNS-NRLT 517 (844)
T ss_dssp CSSCS--SCBCCEECCCCCHHH-HTTCCTTS-SSSCCSCSEEEEES-CCCS
T ss_pred chhhh--cCcccccEEECCCCc-ccccChhH-ccchhhhheeECCC-CCCC
Confidence 111 245667777777753 44322211 23356688888887 4555
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=4e-18 Score=180.80 Aligned_cols=428 Identities=15% Similarity=0.090 Sum_probs=238.7
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhh
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 227 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 227 (631)
...++++++++. ...++... .++|++|+++++ .+...... .+..+++|++|+++++ .++... +..+..
T Consensus 31 ~~~~~l~ls~~~-L~~ip~~~-------~~~L~~L~Ls~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~ 98 (562)
T 3a79_B 31 ELESMVDYSNRN-LTHVPKDL-------PPRTKALSLSQN-SISELRMP-DISFLSELRVLRLSHN-RIRSLD-FHVFLF 98 (562)
T ss_dssp --CCEEECTTSC-CCSCCTTS-------CTTCCEEECCSS-CCCCCCGG-GTTTCTTCCEEECCSC-CCCEEC-TTTTTT
T ss_pred CCCcEEEcCCCC-CccCCCCC-------CCCcCEEECCCC-CccccChh-hhccCCCccEEECCCC-CCCcCC-HHHhCC
Confidence 345888988773 22344321 379999999986 35433222 2347899999999985 555311 123346
Q ss_pred CCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccc
Q 006794 228 CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGK 307 (631)
Q Consensus 228 l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 307 (631)
+++|++|+++++ .++.-... .+++|++|+++++.- ............+. |+.|+++++.+....+..+...
T Consensus 99 l~~L~~L~Ls~N-~l~~lp~~----~l~~L~~L~Ls~N~l-~~l~~p~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~L-- 169 (562)
T 3a79_B 99 NQDLEYLDVSHN-RLQNISCC----PMASLRHLDLSFNDF-DVLPVCKEFGNLTK-LTFLGLSAAKFRQLDLLPVAHL-- 169 (562)
T ss_dssp CTTCCEEECTTS-CCCEECSC----CCTTCSEEECCSSCC-SBCCCCGGGGGCTT-CCEEEEECSBCCTTTTGGGTTS--
T ss_pred CCCCCEEECCCC-cCCccCcc----ccccCCEEECCCCCc-cccCchHhhcccCc-ccEEecCCCccccCchhhhhhc--
Confidence 899999999985 34431111 489999999998763 22111111222333 9999999998876443322211
Q ss_pred cccccccCCCCC----CchhhHHHh--------------------hccccCCCcceEeccCCCCCChHHH---HHHhhcC
Q 006794 308 ALTNLVLSDLPN----VSEKGFWVM--------------------GNAQGLQKLVSLTIASGGGVTDVSL---EAMGKGC 360 (631)
Q Consensus 308 ~L~~L~l~~~~~----~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~ 360 (631)
+|+.|+++++.. .....+..+ .....+++|+.|+++++. .....+ .......
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~l~~~~~~l~~l 248 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND-ENCQRLMTFLSELTRG 248 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS-TTHHHHHHHHHHHHSC
T ss_pred eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccc-cccchHHHHHHHHhcc
Confidence 338888876633 111111110 011245677777777653 111111 1122345
Q ss_pred CCcCeEEcCCCCCCCHHHHHHHHH--hcCCCCeEeccCCCCC---ch---------------------------hhHHHH
Q 006794 361 LNLKQMCLRKCCFVSDNGLVAFSK--AAGSLEILQLEECNRV---SQ---------------------------SGILGV 408 (631)
Q Consensus 361 ~~L~~L~l~~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~~---~~---------------------------~~~~~~ 408 (631)
++|+.|.+.++ .+.+..+..+.. ..++|++|++++|.-. .. ..+...
T Consensus 249 ~~L~~L~L~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~ 327 (562)
T 3a79_B 249 PTLLNVTLQHI-ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327 (562)
T ss_dssp SSCEEEEEEEE-EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHH
T ss_pred CcceEEEecCC-cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhh
Confidence 77777777664 344443333322 2346777777665311 10 111111
Q ss_pred HhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCch-hhHH
Q 006794 409 VSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDV-GIFP 487 (631)
Q Consensus 409 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~~ 487 (631)
+ . ..+|+.|+++++.... .. ....+++|++|++++|. +++..... ...+++|+.|++++ +.++.- .+..
T Consensus 328 ~-~-~~~L~~L~l~~n~~~~-~~----~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~ 397 (562)
T 3a79_B 328 F-A-EMNIKMLSISDTPFIH-MV----CPPSPSSFTFLNFTQNV-FTDSVFQG-CSTLKRLQTLILQR-NGLKNFFKVAL 397 (562)
T ss_dssp H-H-TCCCSEEEEESSCCCC-CC----CCSSCCCCCEEECCSSC-CCTTTTTT-CCSCSSCCEEECCS-SCCCBTTHHHH
T ss_pred h-c-cCcceEEEccCCCccc-cc----CccCCCCceEEECCCCc-cccchhhh-hcccCCCCEEECCC-CCcCCcccchh
Confidence 1 1 1457777777754321 11 11467888888888875 33211122 23468888888888 455432 2222
Q ss_pred HHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcC-CcCCEEEecCCccChhhHHh
Q 006794 488 LLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC-MFLSYLDVSKCAITDMGISA 566 (631)
Q Consensus 488 l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~-~~L~~L~L~~~~l~~~~~~~ 566 (631)
.+...+ +|+.|+++++ .++......... .+++|+.|++++ +.+++.. ...+ ++|+.|++++|.++... ..
T Consensus 398 ~~~~l~-~L~~L~l~~N-~l~~~~~~~~~~-~l~~L~~L~l~~-n~l~~~~----~~~l~~~L~~L~L~~N~l~~ip-~~ 468 (562)
T 3a79_B 398 MTKNMS-SLETLDVSLN-SLNSHAYDRTCA-WAESILVLNLSS-NMLTGSV----FRCLPPKVKVLDLHNNRIMSIP-KD 468 (562)
T ss_dssp TTTTCT-TCCEEECTTS-CCBSCCSSCCCC-CCTTCCEEECCS-SCCCGGG----GSSCCTTCSEEECCSSCCCCCC-TT
T ss_pred hhcCCC-CCCEEECCCC-cCCCccChhhhc-CcccCCEEECCC-CCCCcch----hhhhcCcCCEEECCCCcCcccC-hh
Confidence 233344 8888888885 444311111111 468888888888 4676432 2334 58899999988877421 12
Q ss_pred hhhccCCCccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCHHHHHHHH
Q 006794 567 LSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLV 621 (631)
Q Consensus 567 l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~l~ 621 (631)
+. .+++|++|++++|. ++..... ....+++|+.|++++++-..+..+..+.
T Consensus 469 ~~--~l~~L~~L~L~~N~-l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~~ 519 (562)
T 3a79_B 469 VT--HLQALQELNVASNQ-LKSVPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRYL 519 (562)
T ss_dssp TT--SSCCCSEEECCSSC-CCCCCTT-STTTCTTCCCEECCSCCBCCCHHHHHHH
T ss_pred hc--CCCCCCEEECCCCC-CCCCCHH-HHhcCCCCCEEEecCCCcCCCcchHHHH
Confidence 22 67788999998864 6532221 1344667888999886655555555553
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=1.2e-16 Score=163.52 Aligned_cols=202 Identities=13% Similarity=0.069 Sum_probs=94.3
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhh
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 227 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 227 (631)
+++++|+++++. ...++ . ...+++|++|+++++ .++... ...+++|++|+++++ .++.. . ...
T Consensus 42 ~~L~~L~Ls~n~-l~~~~-----~-l~~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N-~l~~~--~--~~~ 104 (457)
T 3bz5_A 42 ATLTSLDCHNSS-ITDMT-----G-IEKLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSN-KLTNL--D--VTP 104 (457)
T ss_dssp TTCCEEECCSSC-CCCCT-----T-GGGCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCC--C--CTT
T ss_pred CCCCEEEccCCC-cccCh-----h-hcccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCC-CCcee--e--cCC
Confidence 466666666552 11111 1 124566666666654 233321 234566666666653 33321 1 234
Q ss_pred CCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccc
Q 006794 228 CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGK 307 (631)
Q Consensus 228 l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 307 (631)
+++|++|+++++ .++... +. .+++|++|+++++. +++.. ...++
T Consensus 105 l~~L~~L~L~~N-~l~~l~---~~-~l~~L~~L~l~~N~---------------------------l~~l~----l~~l~ 148 (457)
T 3bz5_A 105 LTKLTYLNCDTN-KLTKLD---VS-QNPLLTYLNCARNT---------------------------LTEID----VSHNT 148 (457)
T ss_dssp CTTCCEEECCSS-CCSCCC---CT-TCTTCCEEECTTSC---------------------------CSCCC----CTTCT
T ss_pred CCcCCEEECCCC-cCCeec---CC-CCCcCCEEECCCCc---------------------------cceec----cccCC
Confidence 566666666653 232211 22 25555555555443 22211 11245
Q ss_pred cccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcC
Q 006794 308 ALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAG 387 (631)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 387 (631)
+|+.|+++++..+.... ...+++|+.|+++++. +.... ...+++|+.|+++++. ++... ...++
T Consensus 149 ~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n~-l~~l~----l~~l~~L~~L~l~~N~-l~~~~----l~~l~ 212 (457)
T 3bz5_A 149 QLTELDCHLNKKITKLD------VTPQTQLTTLDCSFNK-ITELD----VSQNKLLNRLNCDTNN-ITKLD----LNQNI 212 (457)
T ss_dssp TCCEEECTTCSCCCCCC------CTTCTTCCEEECCSSC-CCCCC----CTTCTTCCEEECCSSC-CSCCC----CTTCT
T ss_pred cCCEEECCCCCcccccc------cccCCcCCEEECCCCc-cceec----cccCCCCCEEECcCCc-CCeec----cccCC
Confidence 56666665554333221 2345666666666654 33322 2345666666666642 22211 23456
Q ss_pred CCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccc
Q 006794 388 SLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKC 424 (631)
Q Consensus 388 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 424 (631)
+|+.|+++++. ++... ...+++|+.|+++++
T Consensus 213 ~L~~L~Ls~N~-l~~ip-----~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 213 QLTFLDCSSNK-LTEID-----VTPLTQLTYFDCSVN 243 (457)
T ss_dssp TCSEEECCSSC-CSCCC-----CTTCTTCSEEECCSS
T ss_pred CCCEEECcCCc-ccccC-----ccccCCCCEEEeeCC
Confidence 66666666543 22221 112356666666654
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=4.5e-17 Score=177.55 Aligned_cols=326 Identities=12% Similarity=0.055 Sum_probs=154.8
Q ss_pred hCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhh------hcccceeccccccchhhHH
Q 006794 227 NCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSAS------SVLTRVKLQALNITDFSLA 300 (631)
Q Consensus 227 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~------~~L~~L~l~~~~l~~~~~~ 300 (631)
.+++|++|++++|.. .......+.. +++|+.|+++++..+....+..-..... +.|+.|+++++.+......
T Consensus 489 ~L~~L~~L~Ls~N~l-~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPN-MTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTT-CCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred cCCCCCEEECcCCCC-CccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 456666666665431 1111222333 5666666666554222201111111111 1266666666655522110
Q ss_pred HHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCC-cCeEEcCCCCCCCHHHH
Q 006794 301 VIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLN-LKQMCLRKCCFVSDNGL 379 (631)
Q Consensus 301 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~l 379 (631)
.....+++|+.|+++++... . ++.+..+++|+.|+++++. +.. +......+++ |+.|+++++. +.. +
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~-~-----lp~~~~L~~L~~L~Ls~N~-l~~--lp~~l~~l~~~L~~L~Ls~N~-L~~--l 634 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVR-H-----LEAFGTNVKLTDLKLDYNQ-IEE--IPEDFCAFTDQVEGLGFSHNK-LKY--I 634 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCC-B-----CCCCCTTSEESEEECCSSC-CSC--CCTTSCEECTTCCEEECCSSC-CCS--C
T ss_pred hhhhcCCCCCEEECCCCCcc-c-----chhhcCCCcceEEECcCCc-ccc--chHHHhhccccCCEEECcCCC-CCc--C
Confidence 12223456666666665322 1 1133456677777777654 331 1111233455 7777776653 321 1
Q ss_pred HHHHHhc--CCCCeEeccCCCCCchhh-HH-HHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCC
Q 006794 380 VAFSKAA--GSLEILQLEECNRVSQSG-IL-GVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFG 455 (631)
Q Consensus 380 ~~l~~~~--~~L~~L~l~~~~~~~~~~-~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 455 (631)
......+ ++|+.|++++|.-..... +. .......++|+.|++++|... .++ ......+++|+.|++++|. +.
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp--~~~~~~l~~L~~L~Ls~N~-L~ 710 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFP--TELFATGSPISTIILSNNL-MT 710 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCC--HHHHHTTCCCSEEECCSCC-CS
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccC--HHHHccCCCCCEEECCCCc-CC
Confidence 1111112 336777776654211100 00 000001246777777775432 221 1112246777777777764 22
Q ss_pred HHHHHHH------hhcCCCCcEEecccccCCCchhhHHHHh--hcccCccEEecCCCCCCchHHHHHHHhhcCcccCeec
Q 006794 456 NASLAML------GKLCPQLQHVDLSGLYGITDVGIFPLLE--SCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLN 527 (631)
Q Consensus 456 ~~~l~~l------~~~~~~L~~L~l~~~~~l~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~ 527 (631)
......+ ...+++|+.|+|+++ .++ .+...+. .++ +|+.|+|+++ .++.. ...+. .+++|+.|+
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~--~lp~~l~~~~l~-~L~~L~Ls~N-~L~~l-p~~l~--~L~~L~~L~ 782 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT--SLSDDFRATTLP-YLSNMDVSYN-CFSSF-PTQPL--NSSQLKAFG 782 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC--CCCGGGSTTTCT-TCCEEECCSS-CCSSC-CCGGG--GCTTCCEEE
T ss_pred ccChHHhccccccccccCCccEEECCCC-CCc--cchHHhhhccCC-CcCEEEeCCC-CCCcc-chhhh--cCCCCCEEE
Confidence 1110000 011237777777773 444 1222221 233 7888888774 45441 11122 478888888
Q ss_pred ccCC-----CCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 528 LDGC-----RKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 528 l~~c-----~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
|+++ +.+.......+ ..+++|+.|+|++|.++.... . -.++|+.|++++|+
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l-~~L~~L~~L~Ls~N~L~~Ip~-~----l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGI-TTCPSLIQLQIGSNDIRKVDE-K----LTPQLYILDIADNP 838 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTG-GGCSSCCEEECCSSCCCBCCS-C----CCSSSCEEECCSCT
T ss_pred CCCCCCcccccccccChHHH-hcCCCCCEEECCCCCCCccCH-h----hcCCCCEEECCCCC
Confidence 8652 23332222223 348999999999998843211 1 23589999999987
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.66 E-value=7.3e-17 Score=162.83 Aligned_cols=313 Identities=15% Similarity=0.104 Sum_probs=177.6
Q ss_pred CCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCC
Q 006794 176 CPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCR 255 (631)
Q Consensus 176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 255 (631)
+++++.|++.++ .+.... ..+...+++|++|+++++ .++.... ..+..+++|++|+++++ .++......+.. ++
T Consensus 44 l~~l~~l~l~~~-~l~~l~-~~~~~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLP-AALLDSFRQVELLNLNDL-QIEEIDT-YAFAYAHTIQKLYMGFN-AIRYLPPHVFQN-VP 117 (390)
T ss_dssp GCCCSEEEEESC-EESEEC-THHHHHCCCCSEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CT
T ss_pred cCCceEEEecCC-chhhCC-hhHhcccccCcEEECCCC-cccccCh-hhccCCCCcCEEECCCC-CCCcCCHHHhcC-CC
Confidence 578888888775 344332 223346788888888874 3443111 12235778888888764 333322222333 66
Q ss_pred CCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCC
Q 006794 256 NLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQ 335 (631)
Q Consensus 256 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 335 (631)
+|++|+++++.- +.+. . .....++
T Consensus 118 ~L~~L~L~~n~l-----------------~~l~---------------------------------~------~~~~~l~ 141 (390)
T 3o6n_A 118 LLTVLVLERNDL-----------------SSLP---------------------------------R------GIFHNTP 141 (390)
T ss_dssp TCCEEECCSSCC-----------------CCCC---------------------------------T------TTTTTCT
T ss_pred CCCEEECCCCcc-----------------CcCC---------------------------------H------HHhcCCC
Confidence 777777766531 1000 0 0012457
Q ss_pred CcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCC
Q 006794 336 KLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASK 415 (631)
Q Consensus 336 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 415 (631)
+|++|+++++. +..... .....+++|++|+++++. ++... ...+++|+.|+++++. ++... ..+.
T Consensus 142 ~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~----~~~l~~L~~L~l~~n~-l~~~~-------~~~~ 206 (390)
T 3o6n_A 142 KLTTLSMSNNN-LERIED-DTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHANVSYNL-LSTLA-------IPIA 206 (390)
T ss_dssp TCCEEECCSSC-CCBCCT-TTTSSCTTCCEEECCSSC-CSBCC----GGGCTTCSEEECCSSC-CSEEE-------CCSS
T ss_pred CCcEEECCCCc-cCccCh-hhccCCCCCCEEECCCCc-CCccc----cccccccceeeccccc-ccccC-------CCCc
Confidence 78888888764 333221 223456899999998863 43322 2357889999988754 33221 2268
Q ss_pred CcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccC
Q 006794 416 LKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAG 495 (631)
Q Consensus 416 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 495 (631)
|+.|+++++. +..++ ....++|+.|++++|.... . .....+++|+.|++++ +.++...... +...+ +
T Consensus 207 L~~L~l~~n~-l~~~~-----~~~~~~L~~L~l~~n~l~~-~---~~l~~l~~L~~L~Ls~-n~l~~~~~~~-~~~l~-~ 273 (390)
T 3o6n_A 207 VEELDASHNS-INVVR-----GPVNVELTILKLQHNNLTD-T---AWLLNYPGLVEVDLSY-NELEKIMYHP-FVKMQ-R 273 (390)
T ss_dssp CSEEECCSSC-CCEEE-----CCCCSSCCEEECCSSCCCC-C---GGGGGCTTCSEEECCS-SCCCEEESGG-GTTCS-S
T ss_pred ceEEECCCCe-eeecc-----ccccccccEEECCCCCCcc-c---HHHcCCCCccEEECCC-CcCCCcChhH-ccccc-c
Confidence 8889888854 33321 1235788888888876332 2 2234568888888887 3444322111 22233 7
Q ss_pred ccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCc
Q 006794 496 LVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNL 575 (631)
Q Consensus 496 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L 575 (631)
|++|+++++ .++.... ... .+++|+.|++++| .++.... .+ ..+++|+.|++++|.+++..+ ..+++|
T Consensus 274 L~~L~L~~n-~l~~~~~--~~~-~l~~L~~L~L~~n-~l~~~~~-~~-~~l~~L~~L~L~~N~i~~~~~-----~~~~~L 341 (390)
T 3o6n_A 274 LERLYISNN-RLVALNL--YGQ-PIPTLKVLDLSHN-HLLHVER-NQ-PQFDRLENLYLDHNSIVTLKL-----STHHTL 341 (390)
T ss_dssp CCEEECCSS-CCCEEEC--SSS-CCTTCCEEECCSS-CCCCCGG-GH-HHHTTCSEEECCSSCCCCCCC-----CTTCCC
T ss_pred CCEEECCCC-cCcccCc--ccC-CCCCCCEEECCCC-cceecCc-cc-cccCcCCEEECCCCccceeCc-----hhhccC
Confidence 888888774 4443211 111 3677778887774 5553221 12 236777888887777766432 255677
Q ss_pred cEEeccCCCCCCcchH
Q 006794 576 QVLSLSSCSEVSNKSM 591 (631)
Q Consensus 576 ~~L~l~~c~~l~~~~~ 591 (631)
+.|++++|+ ++....
T Consensus 342 ~~L~l~~N~-~~~~~~ 356 (390)
T 3o6n_A 342 KNLTLSHND-WDCNSL 356 (390)
T ss_dssp SEEECCSSC-EEHHHH
T ss_pred CEEEcCCCC-ccchhH
Confidence 777777765 544433
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.66 E-value=1.7e-17 Score=177.75 Aligned_cols=131 Identities=16% Similarity=0.146 Sum_probs=69.5
Q ss_pred CCcEEecccccCCCchhhHHHHh--hcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCC-----CCCChHHHH
Q 006794 468 QLQHVDLSGLYGITDVGIFPLLE--SCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGC-----RKITDASLV 540 (631)
Q Consensus 468 ~L~~L~l~~~~~l~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c-----~~l~~~~~~ 540 (631)
+|+.|++++ +.++ .+...+. ..+ +|+.|+++++ .++.. ...+. .+++|+.|+++++ +.+......
T Consensus 489 ~L~~L~Ls~-N~l~--~lp~~~~~~~l~-~L~~L~Ls~N-~l~~i-p~~~~--~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 489 LLTSIDLRF-NKLT--KLSDDFRATTLP-YLVGIDLSYN-SFSKF-PTQPL--NSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp GCCEEECCS-SCCC--BCCGGGSTTTCT-TCCEEECCSS-CCSSC-CCGGG--GCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred CccEEECcC-CcCC--ccChhhhhccCC-CcCEEECCCC-CCCCc-Chhhh--cCCCCCEEECCCCcccccCcccccChH
Confidence 666666666 3333 1211111 222 6777777663 44431 11122 4677888887542 233322222
Q ss_pred HHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcch----HHHHHHhcC---cccccccccccCCC
Q 006794 541 AIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKS----MPALKKLGK---TLVGLNLQNCNSIN 613 (631)
Q Consensus 541 ~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~----~~~l~~~~~---~L~~L~l~~c~~l~ 613 (631)
.+ ..+++|++|+|++|.++..... -.++|+.|++++|+ ++... .+.+..... ..+..++.+|+.+.
T Consensus 561 ~l-~~l~~L~~L~Ls~N~l~~ip~~-----~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 561 GI-TLCPSLTQLQIGSNDIRKVNEK-----ITPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp TG-GGCSSCCEEECCSSCCCBCCSC-----CCTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred HH-hcCCCCCEEECCCCcCCccCHh-----HhCcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 23 3488999999999988542211 23689999999976 33222 223222222 23556778887653
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.65 E-value=4.7e-16 Score=159.22 Aligned_cols=326 Identities=15% Similarity=0.121 Sum_probs=179.6
Q ss_pred CCCCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHH
Q 006794 146 GHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIA 225 (631)
Q Consensus 146 ~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 225 (631)
..+++++|+++++. +.... ...+++|++|+++++ .++... ...+++|++|+++++ .++. +. .
T Consensus 62 ~l~~L~~L~Ls~n~----l~~~~----~~~l~~L~~L~Ls~N-~l~~~~----~~~l~~L~~L~L~~N-~l~~--l~--~ 123 (457)
T 3bz5_A 62 KLTGLTKLICTSNN----ITTLD----LSQNTNLTYLACDSN-KLTNLD----VTPLTKLTYLNCDTN-KLTK--LD--V 123 (457)
T ss_dssp GCTTCSEEECCSSC----CSCCC----CTTCTTCSEEECCSS-CCSCCC----CTTCTTCCEEECCSS-CCSC--CC--C
T ss_pred ccCCCCEEEccCCc----CCeEc----cccCCCCCEEECcCC-CCceee----cCCCCcCCEEECCCC-cCCe--ec--C
Confidence 34799999999883 33322 246899999999986 455433 447899999999985 5554 22 4
Q ss_pred hhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhc
Q 006794 226 ENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHY 305 (631)
Q Consensus 226 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 305 (631)
..+++|++|+++++ .++... +. .+++|++|+++++..+....+. .. ..|+.|+++++.++... ...
T Consensus 124 ~~l~~L~~L~l~~N-~l~~l~---l~-~l~~L~~L~l~~n~~~~~~~~~----~l-~~L~~L~ls~n~l~~l~----l~~ 189 (457)
T 3bz5_A 124 SQNPLLTYLNCARN-TLTEID---VS-HNTQLTELDCHLNKKITKLDVT----PQ-TQLTTLDCSFNKITELD----VSQ 189 (457)
T ss_dssp TTCTTCCEEECTTS-CCSCCC---CT-TCTTCCEEECTTCSCCCCCCCT----TC-TTCCEEECCSSCCCCCC----CTT
T ss_pred CCCCcCCEEECCCC-ccceec---cc-cCCcCCEEECCCCCcccccccc----cC-CcCCEEECCCCccceec----ccc
Confidence 56899999999985 444422 33 3899999999988654433221 11 22777777777666532 223
Q ss_pred cccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHh
Q 006794 306 GKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKA 385 (631)
Q Consensus 306 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~ 385 (631)
+++|+.|+++++.... . ....+++|+.|+++++. +...+ ...+++|+.|+++++. ++... ...
T Consensus 190 l~~L~~L~l~~N~l~~-~------~l~~l~~L~~L~Ls~N~-l~~ip----~~~l~~L~~L~l~~N~-l~~~~----~~~ 252 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITK-L------DLNQNIQLTFLDCSSNK-LTEID----VTPLTQLTYFDCSVNP-LTELD----VST 252 (457)
T ss_dssp CTTCCEEECCSSCCSC-C------CCTTCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCCC----CTT
T ss_pred CCCCCEEECcCCcCCe-e------ccccCCCCCEEECcCCc-ccccC----ccccCCCCEEEeeCCc-CCCcC----HHH
Confidence 4566666665553211 1 12345566666666553 33211 2334556666665542 22211 123
Q ss_pred cCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhc
Q 006794 386 AGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKL 465 (631)
Q Consensus 386 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~ 465 (631)
+++|+.|+++. .+|+.|++++|.....++ ...+++|+.|++++|..+.... ..
T Consensus 253 l~~L~~L~l~~-----------------n~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~Ls~n~~l~~l~-----~~ 305 (457)
T 3bz5_A 253 LSKLTTLHCIQ-----------------TDLLEIDLTHNTQLIYFQ-----AEGCRKIKELDVTHNTQLYLLD-----CQ 305 (457)
T ss_dssp CTTCCEEECTT-----------------CCCSCCCCTTCTTCCEEE-----CTTCTTCCCCCCTTCTTCCEEE-----CT
T ss_pred CCCCCEEeccC-----------------CCCCEEECCCCccCCccc-----ccccccCCEEECCCCcccceec-----cC
Confidence 45555555443 355566666655444432 2346667777776665332211 12
Q ss_pred CCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhc
Q 006794 466 CPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNN 545 (631)
Q Consensus 466 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 545 (631)
.++|+.|+++++ + +|+.|+++++ .++... +. .+++|+.|++++ +.+++
T Consensus 306 ~~~L~~L~l~~~---------------~-~L~~L~L~~N-~l~~l~---l~--~l~~L~~L~l~~-N~l~~--------- 353 (457)
T 3bz5_A 306 AAGITELDLSQN---------------P-KLVYLYLNNT-ELTELD---VS--HNTKLKSLSCVN-AHIQD--------- 353 (457)
T ss_dssp TCCCSCCCCTTC---------------T-TCCEEECTTC-CCSCCC---CT--TCTTCSEEECCS-SCCCB---------
T ss_pred CCcceEechhhc---------------c-cCCEEECCCC-cccccc---cc--cCCcCcEEECCC-CCCCC---------
Confidence 244555554442 1 5666666553 344321 11 356666666665 45542
Q ss_pred CCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCC
Q 006794 546 CMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVS 587 (631)
Q Consensus 546 ~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 587 (631)
++.|..|.+++|.+...+ .+..|..++++++ +++
T Consensus 354 l~~L~~L~l~~n~l~g~~-------~~~~l~~l~l~~N-~l~ 387 (457)
T 3bz5_A 354 FSSVGKIPALNNNFEAEG-------QTITMPKETLTNN-SLT 387 (457)
T ss_dssp CTTGGGSSGGGTSEEEEE-------EEEECCCBCCBTT-BEE
T ss_pred ccccccccccCCcEEecc-------eeeecCccccccC-cEE
Confidence 344555555555544321 2335666666663 344
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=4.2e-18 Score=184.25 Aligned_cols=196 Identities=16% Similarity=0.091 Sum_probs=106.1
Q ss_pred CCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcc
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 493 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 493 (631)
.+|+.+++..+.... ....+..+++|+.+++..+........ .....+++++.++++.+ .+.... ...+...
T Consensus 397 ~~L~~L~~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~l~~l~~l~ls~n-~l~~~~-~~~~~~~- 468 (635)
T 4g8a_A 397 ISLKYLDLSFNGVIT----MSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHT-HTRVAF-NGIFNGL- 468 (635)
T ss_dssp SCCCEEECCSCSEEE----ECSCCTTCTTCCEEECTTSEEESTTSS-CTTTTCTTCCEEECTTS-CCEECC-TTTTTTC-
T ss_pred hhhhhhhcccccccc----ccccccccccccchhhhhccccccccc-ccccccccccccccccc-cccccc-ccccccc-
Confidence 566666665543211 112234567777777766542221111 11223467777777762 222111 1111122
Q ss_pred cCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCC
Q 006794 494 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 573 (631)
Q Consensus 494 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~ 573 (631)
+.++.|+++++..........+ . .+++|+.|+|++| +++......+ ..+++|++|+|++|+++......+. .++
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~-~-~l~~L~~L~Ls~N-~L~~l~~~~f-~~l~~L~~L~Ls~N~l~~l~~~~~~--~l~ 542 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIF-T-ELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYK--CLN 542 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCC-T-TCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTSCCCBCCCGGGT--TCT
T ss_pred hhhhhhhhhhcccccccCchhh-h-hccccCEEECCCC-ccCCcChHHH-cCCCCCCEEECCCCcCCCCChhHHh--CCC
Confidence 2788888877532221111111 1 4678888888884 6665433333 3478888888888877654433333 667
Q ss_pred CccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCHHHHHHHHhhc
Q 006794 574 NLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESL 624 (631)
Q Consensus 574 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~l~~~l 624 (631)
+|+.|++++|. ++......+...+++|+.|+++++|-..+-.+.++.+++
T Consensus 543 ~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 543 SLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp TCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred CCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence 88888888854 654444444444567888888875555554555555544
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.62 E-value=5.3e-16 Score=156.52 Aligned_cols=316 Identities=16% Similarity=0.089 Sum_probs=194.2
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhh
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 227 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 227 (631)
++++.++++++. ...++... ...+++|++|++.++ .+...... ....+++|++|+++++ .++.. ....+..
T Consensus 45 ~~l~~l~l~~~~-l~~l~~~~----~~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~ 115 (390)
T 3o6n_A 45 NNQKIVTFKNST-MRKLPAAL----LDSFRQVELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFN-AIRYL-PPHVFQN 115 (390)
T ss_dssp CCCSEEEEESCE-ESEECTHH----HHHCCCCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCCC-CTTTTTT
T ss_pred CCceEEEecCCc-hhhCChhH----hcccccCcEEECCCC-cccccChh-hccCCCCcCEEECCCC-CCCcC-CHHHhcC
Confidence 688999998863 22333322 245889999999876 35443222 2346789999999885 34431 1122346
Q ss_pred CCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccc
Q 006794 228 CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGK 307 (631)
Q Consensus 228 l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 307 (631)
+++|++|+++++ .++... ..+...+++|++|+++++.- ..+.-
T Consensus 116 l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n~l-----------------~~~~~------------------ 158 (390)
T 3o6n_A 116 VPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNNNL-----------------ERIED------------------ 158 (390)
T ss_dssp CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCC-----------------CBCCT------------------
T ss_pred CCCCCEEECCCC-ccCcCC-HHHhcCCCCCcEEECCCCcc-----------------CccCh------------------
Confidence 889999999875 344221 12223377888888877541 10000
Q ss_pred cccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcC
Q 006794 308 ALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAG 387 (631)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 387 (631)
.....+++|++|+++++. +.... ...+++|+.|++.++ .++.. ...+
T Consensus 159 ---------------------~~~~~l~~L~~L~l~~n~-l~~~~----~~~l~~L~~L~l~~n-~l~~~------~~~~ 205 (390)
T 3o6n_A 159 ---------------------DTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHANVSYN-LLSTL------AIPI 205 (390)
T ss_dssp ---------------------TTTSSCTTCCEEECCSSC-CSBCC----GGGCTTCSEEECCSS-CCSEE------ECCS
T ss_pred ---------------------hhccCCCCCCEEECCCCc-CCccc----cccccccceeecccc-ccccc------CCCC
Confidence 001235778888887764 44332 234688999999885 33321 1346
Q ss_pred CCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCC
Q 006794 388 SLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCP 467 (631)
Q Consensus 388 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 467 (631)
+|++|+++++. +..... ...++|+.|++++|... +. ..+..+++|++|++++|. +.......+ ..++
T Consensus 206 ~L~~L~l~~n~-l~~~~~-----~~~~~L~~L~l~~n~l~-~~----~~l~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~ 272 (390)
T 3o6n_A 206 AVEELDASHNS-INVVRG-----PVNVELTILKLQHNNLT-DT----AWLLNYPGLVEVDLSYNE-LEKIMYHPF-VKMQ 272 (390)
T ss_dssp SCSEEECCSSC-CCEEEC-----CCCSSCCEEECCSSCCC-CC----GGGGGCTTCSEEECCSSC-CCEEESGGG-TTCS
T ss_pred cceEEECCCCe-eeeccc-----cccccccEEECCCCCCc-cc----HHHcCCCCccEEECCCCc-CCCcChhHc-cccc
Confidence 79999998865 322211 12378999999886533 22 345678899999999885 332211222 3468
Q ss_pred CCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCC
Q 006794 468 QLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCM 547 (631)
Q Consensus 468 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 547 (631)
+|+.|++++ +.++... ......+ +|++|+++++ .++..... +. .+++|+.|++++ +.++... ...++
T Consensus 273 ~L~~L~L~~-n~l~~~~--~~~~~l~-~L~~L~L~~n-~l~~~~~~-~~--~l~~L~~L~L~~-N~i~~~~----~~~~~ 339 (390)
T 3o6n_A 273 RLERLYISN-NRLVALN--LYGQPIP-TLKVLDLSHN-HLLHVERN-QP--QFDRLENLYLDH-NSIVTLK----LSTHH 339 (390)
T ss_dssp SCCEEECCS-SCCCEEE--CSSSCCT-TCCEEECCSS-CCCCCGGG-HH--HHTTCSEEECCS-SCCCCCC----CCTTC
T ss_pred cCCEEECCC-CcCcccC--cccCCCC-CCCEEECCCC-cceecCcc-cc--ccCcCCEEECCC-CccceeC----chhhc
Confidence 999999988 4444321 1112233 8999999886 45432211 22 368899999988 4676543 34588
Q ss_pred cCCEEEecCCccChhhHHhhh
Q 006794 548 FLSYLDVSKCAITDMGISALS 568 (631)
Q Consensus 548 ~L~~L~L~~~~l~~~~~~~l~ 568 (631)
+|+.|++++|+++......+.
T Consensus 340 ~L~~L~l~~N~~~~~~~~~~~ 360 (390)
T 3o6n_A 340 TLKNLTLSHNDWDCNSLRALF 360 (390)
T ss_dssp CCSEEECCSSCEEHHHHHHHT
T ss_pred cCCEEEcCCCCccchhHHHHH
Confidence 999999999998887766655
No 44
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=1e-14 Score=145.22 Aligned_cols=247 Identities=15% Similarity=0.134 Sum_probs=126.0
Q ss_pred CCCcceEeccCCCCCChHHH---HHHhhcCC-CcCeEEcCCCCCCCHHH---HHHHHHhc-CCCCeEeccCCCCCchhh-
Q 006794 334 LQKLVSLTIASGGGVTDVSL---EAMGKGCL-NLKQMCLRKCCFVSDNG---LVAFSKAA-GSLEILQLEECNRVSQSG- 404 (631)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~---~~l~~~~~-~L~~L~l~~~~~~~~~~---l~~l~~~~-~~L~~L~l~~~~~~~~~~- 404 (631)
.++|++|+++++. +.+... ......++ +|++|+++++ .+++.+ +....... ++|++|++++|. +++.+
T Consensus 21 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~ 97 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSS 97 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred CCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence 3458888888775 444333 23334556 7888888876 444433 33333333 788888888765 43332
Q ss_pred --HHHHHhcccCCCcEEecccccCCCcccccc--ccCCC-CCCCceEeccCCCCCCHH---HHHHHhhcCC-CCcEEecc
Q 006794 405 --ILGVVSNSASKLKSLTLVKCMGIKDMATEM--PMLSP-NCSLRSLSIRNCPGFGNA---SLAMLGKLCP-QLQHVDLS 475 (631)
Q Consensus 405 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~-~~~L~~L~l~~~~~~~~~---~l~~l~~~~~-~L~~L~l~ 475 (631)
+...+....++|+.|++++|. +.+..... ..+.. +++|++|++++|. +++. .+.......+ +|++|+++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeec
Confidence 222222222677777777754 22221110 01222 3467777777664 3322 2222222233 67777777
Q ss_pred cccCCCchhhHHHHh---hcccCccEEecCCCCCCchHHHHHHHhh--c-CcccCeecccCCCCCChHHHHHH---HhcC
Q 006794 476 GLYGITDVGIFPLLE---SCKAGLVKVNLSGCLNLTDEVVLALARL--H-SETLELLNLDGCRKITDASLVAI---GNNC 546 (631)
Q Consensus 476 ~~~~l~~~~~~~l~~---~~~~~L~~L~l~~c~~l~~~~~~~l~~~--~-~~~L~~L~l~~c~~l~~~~~~~l---~~~~ 546 (631)
+ +.+++.+...+.. .++++|++|+++++ .+++.+...+... . .++|++|++++ +.+++.+...+ ...+
T Consensus 176 ~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 176 G-NNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCL-NCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp T-SCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCS-SCCCCCCHHHHHHTTTTT
T ss_pred C-CCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcC-CCCCcHHHHHHHHHHhcC
Confidence 6 3454444333322 22236777777664 4554332222210 1 34677777766 46665443332 2445
Q ss_pred CcCCEEEecCCc---cChhhHHhhhh--ccCCCccEEeccCCCCCCcc
Q 006794 547 MFLSYLDVSKCA---ITDMGISALSH--AEQLNLQVLSLSSCSEVSNK 589 (631)
Q Consensus 547 ~~L~~L~L~~~~---l~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~ 589 (631)
++|+.|+|++|. +++.++..+.. ..+++|+.|+++++. +.+.
T Consensus 253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~~ 299 (362)
T 3goz_A 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPS 299 (362)
T ss_dssp TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCGG
T ss_pred CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc-CCCc
Confidence 667777777765 45444444431 144556666676644 5443
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=1.1e-15 Score=162.87 Aligned_cols=315 Identities=15% Similarity=0.110 Sum_probs=191.6
Q ss_pred CCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCC
Q 006794 176 CPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCR 255 (631)
Q Consensus 176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 255 (631)
+++++.+++.++ .+.... ..++..+++|++|+++++ .++.... ..+..+++|++|+++++. ++......+.. ++
T Consensus 50 l~~l~~l~l~~~-~l~~lp-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-l~ 123 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLP-AALLDSFRQVELLNLNDL-QIEEIDT-YAFAYAHTIQKLYMGFNA-IRYLPPHVFQN-VP 123 (597)
T ss_dssp GCCCSEEEESSC-EESEEC-THHHHHCCCCSEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CT
T ss_pred CCCceEEEeeCC-CCCCcC-HHHHccCCCCcEEECCCC-CCCCCCh-HHhcCCCCCCEEECCCCc-CCCCCHHHHcC-CC
Confidence 567888888765 333322 233446788888888874 4443111 122357788888887643 43322222233 67
Q ss_pred CCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCC
Q 006794 256 NLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQ 335 (631)
Q Consensus 256 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 335 (631)
+|++|+++++.- ..+. . ..+..++
T Consensus 124 ~L~~L~L~~n~l-----------------~~l~---------------------------------~------~~~~~l~ 147 (597)
T 3oja_B 124 LLTVLVLERNDL-----------------SSLP---------------------------------R------GIFHNTP 147 (597)
T ss_dssp TCCEEECCSSCC-----------------CCCC---------------------------------T------TTTTTCT
T ss_pred CCCEEEeeCCCC-----------------CCCC---------------------------------H------HHhccCC
Confidence 777777766541 1000 0 0013457
Q ss_pred CcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCC
Q 006794 336 KLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASK 415 (631)
Q Consensus 336 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 415 (631)
+|++|+++++. +..... .....+++|++|+++++. ++... ...+++|+.|+++++. ++..+ ..+.
T Consensus 148 ~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~----~~~l~~L~~L~l~~n~-l~~l~-------~~~~ 212 (597)
T 3oja_B 148 KLTTLSMSNNN-LERIED-DTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHANVSYNL-LSTLA-------IPIA 212 (597)
T ss_dssp TCCEEECCSSC-CCBCCT-TTTTTCTTCCEEECTTSC-CSBCC----GGGCTTCSEEECCSSC-CSEEE-------CCTT
T ss_pred CCCEEEeeCCc-CCCCCh-hhhhcCCcCcEEECcCCC-CCCcC----hhhhhhhhhhhcccCc-ccccc-------CCch
Confidence 88888888774 433221 223457999999999863 43322 2357999999998864 33221 2378
Q ss_pred CcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccC
Q 006794 416 LKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAG 495 (631)
Q Consensus 416 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 495 (631)
|+.|++++|. +..+.. ...++|+.|++++|..... .....+++|+.|++++ +.++...... +..++ +
T Consensus 213 L~~L~ls~n~-l~~~~~-----~~~~~L~~L~L~~n~l~~~----~~l~~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~-~ 279 (597)
T 3oja_B 213 VEELDASHNS-INVVRG-----PVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSY-NELEKIMYHP-FVKMQ-R 279 (597)
T ss_dssp CSEEECCSSC-CCEEEC-----SCCSCCCEEECCSSCCCCC----GGGGGCTTCSEEECCS-SCCCEEESGG-GTTCS-S
T ss_pred hheeeccCCc-cccccc-----ccCCCCCEEECCCCCCCCC----hhhccCCCCCEEECCC-CccCCCCHHH-hcCcc-C
Confidence 9999999865 333321 2347899999999864332 2234569999999998 4555432222 22333 8
Q ss_pred ccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCc
Q 006794 496 LVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNL 575 (631)
Q Consensus 496 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L 575 (631)
|+.|+++++ .++.... ... .+++|+.|+|++| .++... ..+ ..+++|+.|+|++|.++...+ ..+++|
T Consensus 280 L~~L~Ls~N-~l~~l~~--~~~-~l~~L~~L~Ls~N-~l~~i~-~~~-~~l~~L~~L~L~~N~l~~~~~-----~~~~~L 347 (597)
T 3oja_B 280 LERLYISNN-RLVALNL--YGQ-PIPTLKVLDLSHN-HLLHVE-RNQ-PQFDRLENLYLDHNSIVTLKL-----STHHTL 347 (597)
T ss_dssp CCEEECTTS-CCCEEEC--SSS-CCTTCCEEECCSS-CCCCCG-GGH-HHHTTCSEEECCSSCCCCCCC-----CTTCCC
T ss_pred CCEEECCCC-CCCCCCc--ccc-cCCCCcEEECCCC-CCCccC-ccc-ccCCCCCEEECCCCCCCCcCh-----hhcCCC
Confidence 999999885 5544211 112 4789999999984 665322 122 347899999999998876542 256799
Q ss_pred cEEeccCCCCCCcchHHH
Q 006794 576 QVLSLSSCSEVSNKSMPA 593 (631)
Q Consensus 576 ~~L~l~~c~~l~~~~~~~ 593 (631)
+.|++++|+ ++......
T Consensus 348 ~~L~l~~N~-~~~~~~~~ 364 (597)
T 3oja_B 348 KNLTLSHND-WDCNSLRA 364 (597)
T ss_dssp SEEECCSSC-EEHHHHHH
T ss_pred CEEEeeCCC-CCChhHHH
Confidence 999999976 55444433
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.57 E-value=4.7e-16 Score=161.46 Aligned_cols=132 Identities=21% Similarity=0.210 Sum_probs=67.1
Q ss_pred cCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcc
Q 006794 333 GLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNS 412 (631)
Q Consensus 333 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 412 (631)
.+++|++|+++++. +..... .....+++|++|++.++. ++... ...+..+++|+.|+++++.- ..... .....
T Consensus 126 ~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~i-~~~~~--~~~~~ 198 (477)
T 2id5_A 126 DLYNLKSLEVGDND-LVYISH-RAFSGLNSLEQLTLEKCN-LTSIP-TEALSHLHGLIVLRLRHLNI-NAIRD--YSFKR 198 (477)
T ss_dssp TCTTCCEEEECCTT-CCEECT-TSSTTCTTCCEEEEESCC-CSSCC-HHHHTTCTTCCEEEEESCCC-CEECT--TCSCS
T ss_pred ccccCCEEECCCCc-cceeCh-hhccCCCCCCEEECCCCc-CcccC-hhHhcccCCCcEEeCCCCcC-cEeCh--hhccc
Confidence 45677777777654 332211 112346788888888753 33221 12234677888888777542 11110 01112
Q ss_pred cCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEeccc
Q 006794 413 ASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSG 476 (631)
Q Consensus 413 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 476 (631)
+++|+.|++++|.....+... .....+|++|++++|. ++......+ ..+++|+.|++++
T Consensus 199 l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTMTPN---CLYGLNLTSLSITHCN-LTAVPYLAV-RHLVYLRFLNLSY 257 (477)
T ss_dssp CTTCCEEEEECCTTCCEECTT---TTTTCCCSEEEEESSC-CCSCCHHHH-TTCTTCCEEECCS
T ss_pred CcccceeeCCCCccccccCcc---cccCccccEEECcCCc-ccccCHHHh-cCccccCeeECCC
Confidence 366777777776555444221 1223466666666654 222221222 2346666666665
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.56 E-value=2.5e-16 Score=163.58 Aligned_cols=240 Identities=20% Similarity=0.142 Sum_probs=147.4
Q ss_pred cCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcc
Q 006794 333 GLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNS 412 (631)
Q Consensus 333 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 412 (631)
.+++|++|+++++. +.... ......+++|++|++.++. +..... ..+..+++|+.|++++|. ++.... .. ...
T Consensus 102 ~l~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~-~~-l~~ 174 (477)
T 2id5_A 102 GLSNLTKLDISENK-IVILL-DYMFQDLYNLKSLEVGDND-LVYISH-RAFSGLNSLEQLTLEKCN-LTSIPT-EA-LSH 174 (477)
T ss_dssp TCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEEECCTT-CCEECT-TSSTTCTTCCEEEEESCC-CSSCCH-HH-HTT
T ss_pred CCCCCCEEECCCCc-cccCC-hhHccccccCCEEECCCCc-cceeCh-hhccCCCCCCEEECCCCc-CcccCh-hH-hcc
Confidence 45788888888765 33221 1223557999999998863 332211 112367899999999875 332221 11 223
Q ss_pred cCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhc
Q 006794 413 ASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESC 492 (631)
Q Consensus 413 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 492 (631)
+++|+.|+++++... .+ ....+..+++|++|++++|..+.......+ ...+|+.|+++++ .++.... ..+..+
T Consensus 175 l~~L~~L~l~~n~i~-~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n-~l~~~~~-~~~~~l 247 (477)
T 2id5_A 175 LHGLIVLRLRHLNIN-AI--RDYSFKRLYRLKVLEISHWPYLDTMTPNCL--YGLNLTSLSITHC-NLTAVPY-LAVRHL 247 (477)
T ss_dssp CTTCCEEEEESCCCC-EE--CTTCSCSCTTCCEEEEECCTTCCEECTTTT--TTCCCSEEEEESS-CCCSCCH-HHHTTC
T ss_pred cCCCcEEeCCCCcCc-Ee--ChhhcccCcccceeeCCCCccccccCcccc--cCccccEEECcCC-cccccCH-HHhcCc
Confidence 489999999986532 22 123456789999999998865442211111 1258999999884 4543221 223334
Q ss_pred ccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccC
Q 006794 493 KAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQ 572 (631)
Q Consensus 493 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 572 (631)
+ +|+.|+++++ .++......+. .+++|+.|++++ +.++......+ ..+++|+.|+|++|.++......+. .+
T Consensus 248 ~-~L~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~L~~-n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l 319 (477)
T 2id5_A 248 V-YLRFLNLSYN-PISTIEGSMLH--ELLRLQEIQLVG-GQLAVVEPYAF-RGLNYLRVLNVSGNQLTTLEESVFH--SV 319 (477)
T ss_dssp T-TCCEEECCSS-CCCEECTTSCT--TCTTCCEEECCS-SCCSEECTTTB-TTCTTCCEEECCSSCCSCCCGGGBS--CG
T ss_pred c-ccCeeECCCC-cCCccChhhcc--ccccCCEEECCC-CccceECHHHh-cCcccCCEEECCCCcCceeCHhHcC--CC
Confidence 4 8899999885 45443322222 478889999988 47765433333 3488899999999887765444444 67
Q ss_pred CCccEEeccCCCCCCcchHHHH
Q 006794 573 LNLQVLSLSSCSEVSNKSMPAL 594 (631)
Q Consensus 573 ~~L~~L~l~~c~~l~~~~~~~l 594 (631)
++|+.|++++|+-..+..+.++
T Consensus 320 ~~L~~L~l~~N~l~c~c~~~~~ 341 (477)
T 2id5_A 320 GNLETLILDSNPLACDCRLLWV 341 (477)
T ss_dssp GGCCEEECCSSCEECSGGGHHH
T ss_pred cccCEEEccCCCccCccchHhH
Confidence 7889999988774434444443
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=4.1e-15 Score=158.43 Aligned_cols=316 Identities=16% Similarity=0.078 Sum_probs=205.2
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhh
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 227 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 227 (631)
.+++.+++.++. ...++... ...+++|+.|+++++ .+...... .+..+++|++|+|+++ .++.. ....+..
T Consensus 51 ~~l~~l~l~~~~-l~~lp~~~----~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~ 121 (597)
T 3oja_B 51 NNQKIVTFKNST-MRKLPAAL----LDSFRQVELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFN-AIRYL-PPHVFQN 121 (597)
T ss_dssp CCCSEEEESSCE-ESEECTHH----HHHCCCCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCCC-CTTTTTT
T ss_pred CCceEEEeeCCC-CCCcCHHH----HccCCCCcEEECCCC-CCCCCChH-HhcCCCCCCEEECCCC-cCCCC-CHHHHcC
Confidence 688999998863 22344332 246899999999986 45543322 2347899999999985 44431 1223456
Q ss_pred CCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccc
Q 006794 228 CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGK 307 (631)
Q Consensus 228 l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 307 (631)
+++|++|+++++ .++.... .+...+++|++|+++++.- . .+.-
T Consensus 122 l~~L~~L~L~~n-~l~~l~~-~~~~~l~~L~~L~Ls~N~l-~----------------~~~~------------------ 164 (597)
T 3oja_B 122 VPLLTVLVLERN-DLSSLPR-GIFHNTPKLTTLSMSNNNL-E----------------RIED------------------ 164 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCC-C----------------BCCT------------------
T ss_pred CCCCCEEEeeCC-CCCCCCH-HHhccCCCCCEEEeeCCcC-C----------------CCCh------------------
Confidence 899999999985 4443222 2223378899998887651 1 0000
Q ss_pred cccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcC
Q 006794 308 ALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAG 387 (631)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 387 (631)
..+..+++|++|+++++. +.... ...+++|+.|+++++ .++.. ...+
T Consensus 165 ---------------------~~~~~l~~L~~L~L~~N~-l~~~~----~~~l~~L~~L~l~~n-~l~~l------~~~~ 211 (597)
T 3oja_B 165 ---------------------DTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHANVSYN-LLSTL------AIPI 211 (597)
T ss_dssp ---------------------TTTTTCTTCCEEECTTSC-CSBCC----GGGCTTCSEEECCSS-CCSEE------ECCT
T ss_pred ---------------------hhhhcCCcCcEEECcCCC-CCCcC----hhhhhhhhhhhcccC-ccccc------cCCc
Confidence 001345788888888775 44332 244699999999986 33321 1347
Q ss_pred CCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCC
Q 006794 388 SLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCP 467 (631)
Q Consensus 388 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 467 (631)
+|+.|+++++. +..... ...++|+.|++++|.... . ..+..+++|+.|++++|. +.......+ ..++
T Consensus 212 ~L~~L~ls~n~-l~~~~~-----~~~~~L~~L~L~~n~l~~-~----~~l~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~ 278 (597)
T 3oja_B 212 AVEELDASHNS-INVVRG-----PVNVELTILKLQHNNLTD-T----AWLLNYPGLVEVDLSYNE-LEKIMYHPF-VKMQ 278 (597)
T ss_dssp TCSEEECCSSC-CCEEEC-----SCCSCCCEEECCSSCCCC-C----GGGGGCTTCSEEECCSSC-CCEEESGGG-TTCS
T ss_pred hhheeeccCCc-cccccc-----ccCCCCCEEECCCCCCCC-C----hhhccCCCCCEEECCCCc-cCCCCHHHh-cCcc
Confidence 89999999875 322211 123789999999975432 2 446689999999999986 332222222 3469
Q ss_pred CCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCC
Q 006794 468 QLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCM 547 (631)
Q Consensus 468 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 547 (631)
+|+.|++++ +.++.. ......++ +|+.|++++| .++.... .+. .+++|+.|+|++| .++... ...++
T Consensus 279 ~L~~L~Ls~-N~l~~l--~~~~~~l~-~L~~L~Ls~N-~l~~i~~-~~~--~l~~L~~L~L~~N-~l~~~~----~~~~~ 345 (597)
T 3oja_B 279 RLERLYISN-NRLVAL--NLYGQPIP-TLKVLDLSHN-HLLHVER-NQP--QFDRLENLYLDHN-SIVTLK----LSTHH 345 (597)
T ss_dssp SCCEEECTT-SCCCEE--ECSSSCCT-TCCEEECCSS-CCCCCGG-GHH--HHTTCSEEECCSS-CCCCCC----CCTTC
T ss_pred CCCEEECCC-CCCCCC--CcccccCC-CCcEEECCCC-CCCccCc-ccc--cCCCCCEEECCCC-CCCCcC----hhhcC
Confidence 999999998 455432 11122233 8999999996 4543221 122 4789999999994 676543 34589
Q ss_pred cCCEEEecCCccChhhHHhhh
Q 006794 548 FLSYLDVSKCAITDMGISALS 568 (631)
Q Consensus 548 ~L~~L~L~~~~l~~~~~~~l~ 568 (631)
+|+.|+|++|+++......+.
T Consensus 346 ~L~~L~l~~N~~~~~~~~~~~ 366 (597)
T 3oja_B 346 TLKNLTLSHNDWDCNSLRALF 366 (597)
T ss_dssp CCSEEECCSSCEEHHHHHHHT
T ss_pred CCCEEEeeCCCCCChhHHHHH
Confidence 999999999999877666554
No 49
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=7.2e-13 Score=131.76 Aligned_cols=227 Identities=18% Similarity=0.097 Sum_probs=135.8
Q ss_pred cCC-CcceEeccCCCCCChHHH---HHHhhc-CCCcCeEEcCCCCCCCH---HHHHHHHHhc-CCCCeEeccCCCCCchh
Q 006794 333 GLQ-KLVSLTIASGGGVTDVSL---EAMGKG-CLNLKQMCLRKCCFVSD---NGLVAFSKAA-GSLEILQLEECNRVSQS 403 (631)
Q Consensus 333 ~~~-~L~~L~l~~~~~~~~~~~---~~l~~~-~~~L~~L~l~~~~~~~~---~~l~~l~~~~-~~L~~L~l~~~~~~~~~ 403 (631)
.++ +|++|+++++. +.+... ...... +++|++|+++++. +++ ..+...+..+ ++|++|++++|. ++..
T Consensus 48 ~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~ 124 (362)
T 3goz_A 48 NTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSK 124 (362)
T ss_dssp TCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGS
T ss_pred hCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcH
Confidence 344 66777776663 433322 222222 3677777777753 333 2333333344 677777777765 4443
Q ss_pred hHHHH---HhcccCCCcEEecccccCCCccccc--cccCCCC-CCCceEeccCCCCCC---HHHHHHHhhcC-CCCcEEe
Q 006794 404 GILGV---VSNSASKLKSLTLVKCMGIKDMATE--MPMLSPN-CSLRSLSIRNCPGFG---NASLAMLGKLC-PQLQHVD 473 (631)
Q Consensus 404 ~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~-~~L~~L~l~~~~~~~---~~~l~~l~~~~-~~L~~L~ 473 (631)
+...+ +....++|++|++++|.. .+.... ...+... ++|++|++++|. ++ ...+......+ ++|+.|+
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~ 202 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLD 202 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCG-GGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcC-CHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEE
Confidence 33222 222125777777777532 221110 1112233 488888888875 43 33344444455 4999999
Q ss_pred cccccCCCchhhHHHHhhc---ccCccEEecCCCCCCchHHHHHHHh--hcCcccCeecccCCC--CCChHHHHHHHh--
Q 006794 474 LSGLYGITDVGIFPLLESC---KAGLVKVNLSGCLNLTDEVVLALAR--LHSETLELLNLDGCR--KITDASLVAIGN-- 544 (631)
Q Consensus 474 l~~~~~l~~~~~~~l~~~~---~~~L~~L~l~~c~~l~~~~~~~l~~--~~~~~L~~L~l~~c~--~l~~~~~~~l~~-- 544 (631)
+++ +.+++.+...+.... +++|++|+++++ .+++.+...+.. ..+++|+.|++++|. .+++.++..+..
T Consensus 203 Ls~-N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 203 LSA-NLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280 (362)
T ss_dssp CTT-SCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred CCC-CCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence 998 568777666554432 348999999995 677654433332 157899999999953 377777777664
Q ss_pred -cCCcCCEEEecCCccChhhHHh
Q 006794 545 -NCMFLSYLDVSKCAITDMGISA 566 (631)
Q Consensus 545 -~~~~L~~L~L~~~~l~~~~~~~ 566 (631)
.+++|+.|++++|.+.+.....
T Consensus 281 ~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 281 PNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp TTCCEEEEECTTSCBCCGGGCHH
T ss_pred ccCCceEEEecCCCcCCCcchHH
Confidence 4667889999999988764333
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=2.4e-15 Score=162.61 Aligned_cols=217 Identities=15% Similarity=0.048 Sum_probs=132.8
Q ss_pred CCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCC
Q 006794 360 CLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSP 439 (631)
Q Consensus 360 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 439 (631)
+++|+.|.++.+..............+.+|+.+++..+........ ...+++|+.+++..+....... ...+..
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~----~~~l~~L~~l~l~~~~~~~~~~--~~~~~~ 443 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN----FLGLEQLEHLDFQHSNLKQMSE--FSVFLS 443 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC----CTTCTTCCEEECTTSEEESTTS--SCTTTT
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc----ccccccccchhhhhcccccccc--cccccc
Confidence 4677777777653211111112223567788888776542221110 1123889999998765443332 123457
Q ss_pred CCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhc
Q 006794 440 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLH 519 (631)
Q Consensus 440 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 519 (631)
+++++.++++.+.... .. ......+++|+.|+++++.... ......+..++ +|++|+|++| .++......+. .
T Consensus 444 l~~l~~l~ls~n~l~~-~~-~~~~~~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~-~L~~L~Ls~N-~L~~l~~~~f~--~ 516 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRV-AF-NGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTELR-NLTFLDLSQC-QLEQLSPTAFN--S 516 (635)
T ss_dssp CTTCCEEECTTSCCEE-CC-TTTTTTCTTCCEEECTTCEEGG-GEECSCCTTCT-TCCEEECTTS-CCCEECTTTTT--T
T ss_pred cccccccccccccccc-cc-ccccccchhhhhhhhhhccccc-ccCchhhhhcc-ccCEEECCCC-ccCCcChHHHc--C
Confidence 8899999999875321 11 1223346899999999854322 11112223333 8999999996 56554333333 4
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccC-CCccEEeccCCCCCCcchHHH
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQ-LNLQVLSLSSCSEVSNKSMPA 593 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~-~~L~~L~l~~c~~l~~~~~~~ 593 (631)
+++|++|+|++ ++++......+ ..+++|+.|+|++|.++......+. .+ ++|+.|++++|+-.-+....+
T Consensus 517 l~~L~~L~Ls~-N~l~~l~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~~L~~L~L~~Np~~C~C~~~~ 587 (635)
T 4g8a_A 517 LSSLQVLNMSH-NNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNLTQNDFACTCEHQS 587 (635)
T ss_dssp CTTCCEEECTT-SCCCBCCCGGG-TTCTTCCEEECTTSCCCBCCSSCTT--CCCTTCCEEECTTCCBCCSGGGHH
T ss_pred CCCCCEEECCC-CcCCCCChhHH-hCCCCCCEEECCCCcCCCCCHHHHH--hhhCcCCEEEeeCCCCcccCCcHH
Confidence 89999999999 57765443333 4589999999999998875554444 44 589999999987544443333
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.50 E-value=1.7e-14 Score=147.55 Aligned_cols=344 Identities=15% Similarity=0.155 Sum_probs=159.4
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCChhhHHHHHHhCCCCCEeeccCCCCCChHHHHHHHhh
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAEN 227 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 227 (631)
..+++|+++++. ...++. ..++|++|+++++ .+.... ...++|++|+++++ .++. +...
T Consensus 71 ~~l~~L~l~~~~-l~~lp~--------~~~~L~~L~l~~n-~l~~lp-----~~~~~L~~L~l~~n-~l~~-----l~~~ 129 (454)
T 1jl5_A 71 RQAHELELNNLG-LSSLPE--------LPPHLESLVASCN-SLTELP-----ELPQSLKSLLVDNN-NLKA-----LSDL 129 (454)
T ss_dssp HTCSEEECTTSC-CSCCCS--------CCTTCSEEECCSS-CCSSCC-----CCCTTCCEEECCSS-CCSC-----CCSC
T ss_pred cCCCEEEecCCc-cccCCC--------CcCCCCEEEccCC-cCCccc-----cccCCCcEEECCCC-ccCc-----ccCC
Confidence 356777777663 222222 1357777777654 333211 12467777777764 3332 1111
Q ss_pred CCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccc
Q 006794 228 CPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGK 307 (631)
Q Consensus 228 l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 307 (631)
.++|++|+++++ .++. +..+.. +++|++|+++++.- ... ....+
T Consensus 130 ~~~L~~L~L~~n-~l~~--lp~~~~-l~~L~~L~l~~N~l---------------------------~~l-----p~~~~ 173 (454)
T 1jl5_A 130 PPLLEYLGVSNN-QLEK--LPELQN-SSFLKIIDVDNNSL---------------------------KKL-----PDLPP 173 (454)
T ss_dssp CTTCCEEECCSS-CCSS--CCCCTT-CTTCCEEECCSSCC---------------------------SCC-----CCCCT
T ss_pred CCCCCEEECcCC-CCCC--CcccCC-CCCCCEEECCCCcC---------------------------ccc-----CCCcc
Confidence 257777777764 3332 112333 66777777766541 110 00112
Q ss_pred cccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcC
Q 006794 308 ALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAG 387 (631)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 387 (631)
+|+.|+++++.... +.....+++|++|+++++. +.. +....++|++|+++++. +.. +.. ...++
T Consensus 174 ~L~~L~L~~n~l~~------l~~~~~l~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~l~~n~-l~~--lp~-~~~l~ 237 (454)
T 1jl5_A 174 SLEFIAAGNNQLEE------LPELQNLPFLTAIYADNNS-LKK-----LPDLPLSLESIVAGNNI-LEE--LPE-LQNLP 237 (454)
T ss_dssp TCCEEECCSSCCSS------CCCCTTCTTCCEEECCSSC-CSS-----CCCCCTTCCEEECCSSC-CSS--CCC-CTTCT
T ss_pred cccEEECcCCcCCc------CccccCCCCCCEEECCCCc-CCc-----CCCCcCcccEEECcCCc-CCc--ccc-cCCCC
Confidence 44444444432111 0123455677777777654 221 11122567777777753 221 111 23567
Q ss_pred CCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCC
Q 006794 388 SLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCP 467 (631)
Q Consensus 388 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 467 (631)
+|+.|+++++. +.... ...++|+.|++++|. +..++ ..+++|++|++++|. ++. +....+
T Consensus 238 ~L~~L~l~~N~-l~~l~------~~~~~L~~L~l~~N~-l~~l~------~~~~~L~~L~ls~N~-l~~-----l~~~~~ 297 (454)
T 1jl5_A 238 FLTTIYADNNL-LKTLP------DLPPSLEALNVRDNY-LTDLP------ELPQSLTFLDVSENI-FSG-----LSELPP 297 (454)
T ss_dssp TCCEEECCSSC-CSSCC------SCCTTCCEEECCSSC-CSCCC------CCCTTCCEEECCSSC-CSE-----ESCCCT
T ss_pred CCCEEECCCCc-CCccc------ccccccCEEECCCCc-ccccC------cccCcCCEEECcCCc-cCc-----ccCcCC
Confidence 77777777654 22211 112677888887754 22221 124678888888775 222 111236
Q ss_pred CCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCC
Q 006794 468 QLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCM 547 (631)
Q Consensus 468 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 547 (631)
+|+.|++++ +.++.- . ..+++|++|+++++ .++. +.. .+++|+.|++++| .++... ..++
T Consensus 298 ~L~~L~l~~-N~l~~i--~----~~~~~L~~L~Ls~N-~l~~-----lp~-~~~~L~~L~L~~N-~l~~lp-----~~l~ 357 (454)
T 1jl5_A 298 NLYYLNASS-NEIRSL--C----DLPPSLEELNVSNN-KLIE-----LPA-LPPRLERLIASFN-HLAEVP-----ELPQ 357 (454)
T ss_dssp TCCEEECCS-SCCSEE--C----CCCTTCCEEECCSS-CCSC-----CCC-CCTTCCEEECCSS-CCSCCC-----CCCT
T ss_pred cCCEEECcC-CcCCcc--c----CCcCcCCEEECCCC-cccc-----ccc-cCCcCCEEECCCC-cccccc-----chhh
Confidence 788888877 344321 1 12237888888874 4543 111 3578888888884 665321 1477
Q ss_pred cCCEEEecCCccCh--hhHHhhhh-----------ccCCCccEEeccCCCCCCcchHHHHHHhcCccccccccccc
Q 006794 548 FLSYLDVSKCAITD--MGISALSH-----------AEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCN 610 (631)
Q Consensus 548 ~L~~L~L~~~~l~~--~~~~~l~~-----------~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~ 610 (631)
+|+.|++++|.++. .....+.. ...++|+.|++++|+ ++. +...+++++.|.+.+|.
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~-----~~~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LRE-----FPDIPESVEDLRMNSER 427 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCc-----cccchhhHhheeCcCcc
Confidence 88888888887765 21122210 012678888888865 432 12345567788887753
No 52
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.48 E-value=1.5e-14 Score=123.68 Aligned_cols=105 Identities=19% Similarity=0.280 Sum_probs=74.7
Q ss_pred ccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCc-cChhhHHhhhhc--cCCCccEEeccCCCCCCcchHHHHHHhc
Q 006794 522 TLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCA-ITDMGISALSHA--EQLNLQVLSLSSCSEVSNKSMPALKKLG 598 (631)
Q Consensus 522 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~-l~~~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 598 (631)
+|++|++++|. +++.++..+. .|++|++|+|++|. |+|.++..+... .+++|++|+|++|++||+.++..+. .+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred eEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 56777777763 7777766664 47777777777774 777777777611 1356788888888778888877765 46
Q ss_pred CcccccccccccCCCHHH--HHHHHhhcccccc
Q 006794 599 KTLVGLNLQNCNSINSST--VARLVESLWRCDI 629 (631)
Q Consensus 599 ~~L~~L~l~~c~~l~~~~--~~~l~~~l~~~~~ 629 (631)
++|+.|+|++|+.+++.+ ...+.+++|.|+|
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 778888888888888765 5777888888776
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.47 E-value=1.7e-13 Score=140.02 Aligned_cols=374 Identities=14% Similarity=0.102 Sum_probs=200.4
Q ss_pred CCcceeEeeCccccCccChhhHHHHHhcCCCCCeEeecCCCCCC----h-----hhH--HHHH-HhCCCCCEeeccCCCC
Q 006794 148 GGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVG----D-----EGL--LEIA-KECHLLEKLELCHCPS 215 (631)
Q Consensus 148 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~----~-----~~~--~~~~-~~~~~L~~L~L~~~~~ 215 (631)
..++.|.++++.. ..++ ..+ ..+++|++|+++++. +. . ..+ ..+. ....++++|+++++ .
T Consensus 11 ~~L~~L~l~~n~l-~~iP----~~i-~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~ 82 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMP----VEA-ENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-G 82 (454)
T ss_dssp -----------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-C
T ss_pred ccchhhhcccCch-hhCC----hhH-hcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhccCCCEEEecCC-c
Confidence 6788999988732 2222 223 357888888887541 11 0 000 0010 01246799999985 3
Q ss_pred CChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccc
Q 006794 216 ISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNIT 295 (631)
Q Consensus 216 ~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~ 295 (631)
++. + ....++|++|+++++ .++. +. ...++|++|+++++.- ...+ ..+..++.|+++++.+.
T Consensus 83 l~~--l---p~~~~~L~~L~l~~n-~l~~--lp---~~~~~L~~L~l~~n~l-~~l~------~~~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 83 LSS--L---PELPPHLESLVASCN-SLTE--LP---ELPQSLKSLLVDNNNL-KALS------DLPPLLEYLGVSNNQLE 144 (454)
T ss_dssp CSC--C---CSCCTTCSEEECCSS-CCSS--CC---CCCTTCCEEECCSSCC-SCCC------SCCTTCCEEECCSSCCS
T ss_pred ccc--C---CCCcCCCCEEEccCC-cCCc--cc---cccCCCcEEECCCCcc-Cccc------CCCCCCCEEECcCCCCC
Confidence 443 1 112478999999874 3433 11 2257899999988652 2110 11234899999888877
Q ss_pred hhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCC
Q 006794 296 DFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVS 375 (631)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 375 (631)
... . ...+++|+.|+++++... .. . ...++|++|+++++. +.... . ...+++|+.|+++++. +.
T Consensus 145 ~lp--~-~~~l~~L~~L~l~~N~l~-~l-----p--~~~~~L~~L~L~~n~-l~~l~--~-~~~l~~L~~L~l~~N~-l~ 208 (454)
T 1jl5_A 145 KLP--E-LQNSSFLKIIDVDNNSLK-KL-----P--DLPPSLEFIAAGNNQ-LEELP--E-LQNLPFLTAIYADNNS-LK 208 (454)
T ss_dssp SCC--C-CTTCTTCCEEECCSSCCS-CC-----C--CCCTTCCEEECCSSC-CSSCC--C-CTTCTTCCEEECCSSC-CS
T ss_pred CCc--c-cCCCCCCCEEECCCCcCc-cc-----C--CCcccccEEECcCCc-CCcCc--c-ccCCCCCCEEECCCCc-CC
Confidence 643 2 345678888888877422 11 0 123588999998874 43321 2 3557889999998863 32
Q ss_pred HHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCC
Q 006794 376 DNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFG 455 (631)
Q Consensus 376 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 455 (631)
. +. ...++|+.|++++|. +.... . ...+++|+.|++++|. +..++ ..+++|++|++++|.. .
T Consensus 209 ~--l~---~~~~~L~~L~l~~n~-l~~lp--~--~~~l~~L~~L~l~~N~-l~~l~------~~~~~L~~L~l~~N~l-~ 270 (454)
T 1jl5_A 209 K--LP---DLPLSLESIVAGNNI-LEELP--E--LQNLPFLTTIYADNNL-LKTLP------DLPPSLEALNVRDNYL-T 270 (454)
T ss_dssp S--CC---CCCTTCCEEECCSSC-CSSCC--C--CTTCTTCCEEECCSSC-CSSCC------SCCTTCCEEECCSSCC-S
T ss_pred c--CC---CCcCcccEEECcCCc-CCccc--c--cCCCCCCCEEECCCCc-CCccc------ccccccCEEECCCCcc-c
Confidence 1 11 123588999998874 33221 1 1234889999998864 33321 1347899999988763 2
Q ss_pred HHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCC
Q 006794 456 NASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKIT 535 (631)
Q Consensus 456 ~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 535 (631)
. +....++|+.|+++++ .++.-. ..+++|+.|+++++ .++. +.. ..++|+.|++++ +.++
T Consensus 271 ~-----l~~~~~~L~~L~ls~N-~l~~l~------~~~~~L~~L~l~~N-~l~~-----i~~-~~~~L~~L~Ls~-N~l~ 330 (454)
T 1jl5_A 271 D-----LPELPQSLTFLDVSEN-IFSGLS------ELPPNLYYLNASSN-EIRS-----LCD-LPPSLEELNVSN-NKLI 330 (454)
T ss_dssp C-----CCCCCTTCCEEECCSS-CCSEES------CCCTTCCEEECCSS-CCSE-----ECC-CCTTCCEEECCS-SCCS
T ss_pred c-----cCcccCcCCEEECcCC-ccCccc------CcCCcCCEEECcCC-cCCc-----ccC-CcCcCCEEECCC-Cccc
Confidence 2 1223478999999884 444311 11238999999885 5543 111 125899999998 5776
Q ss_pred hHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCc--chHH------------HHHHhcCcc
Q 006794 536 DASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSN--KSMP------------ALKKLGKTL 601 (631)
Q Consensus 536 ~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~--~~~~------------~l~~~~~~L 601 (631)
. +...+++|+.|++++|.++.... .+++|++|++++|. ++. .... .+...+++|
T Consensus 331 ~-----lp~~~~~L~~L~L~~N~l~~lp~------~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L 398 (454)
T 1jl5_A 331 E-----LPALPPRLERLIASFNHLAEVPE------LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNL 398 (454)
T ss_dssp C-----CCCCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC------------
T ss_pred c-----ccccCCcCCEEECCCCccccccc------hhhhccEEECCCCC-CCcCCCChHHHHhhhhcccccccccccCcC
Confidence 4 23347899999999998874221 35799999999965 544 1111 112234789
Q ss_pred cccccccccCCCH
Q 006794 602 VGLNLQNCNSINS 614 (631)
Q Consensus 602 ~~L~l~~c~~l~~ 614 (631)
+.|++++ +.++.
T Consensus 399 ~~L~ls~-N~l~~ 410 (454)
T 1jl5_A 399 KQLHVET-NPLRE 410 (454)
T ss_dssp -------------
T ss_pred CEEECCC-CcCCc
Confidence 9999999 56765
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.43 E-value=2.6e-14 Score=139.38 Aligned_cols=174 Identities=14% Similarity=0.076 Sum_probs=93.8
Q ss_pred CCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcc
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 493 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 493 (631)
++|+.|++++|. +.... ...+++|++|++++|.. +......+ ..+++|+.|++++ +.++......+...++
T Consensus 99 ~~L~~L~l~~n~-l~~~~-----~~~~~~L~~L~l~~N~l-~~~~~~~~-~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 99 PSIETLHAANNN-ISRVS-----CSRGQGKKNIYLANNKI-TMLRDLDE-GCRSRVQYLDLKL-NEIDTVNFAELAASSD 169 (317)
T ss_dssp TTCCEEECCSSC-CSEEE-----ECCCSSCEEEECCSSCC-CSGGGBCT-GGGSSEEEEECTT-SCCCEEEGGGGGGGTT
T ss_pred CCcCEEECCCCc-cCCcC-----ccccCCCCEEECCCCCC-CCccchhh-hccCCCCEEECCC-CCCCcccHHHHhhccC
Confidence 566666666543 22221 12355666666666642 21111111 2246677777766 4454433333333333
Q ss_pred cCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCC
Q 006794 494 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 573 (631)
Q Consensus 494 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~ 573 (631)
+|++|+++++ .++... ... .+++|++|++++ +.++..... ...+++|+.|++++|.++... ..+ ..++
T Consensus 170 -~L~~L~L~~N-~l~~~~--~~~--~l~~L~~L~Ls~-N~l~~l~~~--~~~l~~L~~L~L~~N~l~~l~-~~~--~~l~ 237 (317)
T 3o53_A 170 -TLEHLNLQYN-FIYDVK--GQV--VFAKLKTLDLSS-NKLAFMGPE--FQSAAGVTWISLRNNKLVLIE-KAL--RFSQ 237 (317)
T ss_dssp -TCCEEECTTS-CCCEEE--CCC--CCTTCCEEECCS-SCCCEECGG--GGGGTTCSEEECTTSCCCEEC-TTC--CCCT
T ss_pred -cCCEEECCCC-cCcccc--ccc--ccccCCEEECCC-CcCCcchhh--hcccCcccEEECcCCcccchh-hHh--hcCC
Confidence 6777777764 343321 011 257788888877 466543222 234778888888888776421 122 2567
Q ss_pred CccEEeccCCCCCCcchHHHHHHhcCcccccccccc
Q 006794 574 NLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNC 609 (631)
Q Consensus 574 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c 609 (631)
+|+.|++++|+ ++...++.+....++|+.|++++|
T Consensus 238 ~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 238 NLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCEEEccCCC-ccCcCHHHHHhccccceEEECCCc
Confidence 88888888865 553445555555666777776643
No 55
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=4.1e-12 Score=125.73 Aligned_cols=196 Identities=19% Similarity=0.200 Sum_probs=127.0
Q ss_pred cCCCcEEecccccCCCccccc--cccC-CCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHH
Q 006794 413 ASKLKSLTLVKCMGIKDMATE--MPML-SPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLL 489 (631)
Q Consensus 413 ~~~L~~L~l~~~~~~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~ 489 (631)
.+.|+.|++++|.. .+.... ...+ ...++|++|++++|. +++..+..+...+++|+.|++++ +.+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~-n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQL-NSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCC-CHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCS-SCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCC-CHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCC-CCCCHHHHHHHH
Confidence 37889999988653 222111 0111 234688888888875 67777777766667888888887 577777766665
Q ss_pred hhc---ccCccEEecCCCCCCchHHHHHHHh--hcCcccCeecccCCCCCChHHHHHHH---hcCCcCCEEEecCCccCh
Q 006794 490 ESC---KAGLVKVNLSGCLNLTDEVVLALAR--LHSETLELLNLDGCRKITDASLVAIG---NNCMFLSYLDVSKCAITD 561 (631)
Q Consensus 490 ~~~---~~~L~~L~l~~c~~l~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~~l~~ 561 (631)
... .++|++|+|++| .+++.+...++. ...++|++|+|++ +.+++.++..+. ..+++|++|+|++|.+++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 432 137888888885 677766665543 1467888888888 478877766554 346788888888888888
Q ss_pred hhHHhhhh--ccCCCccEEeccCCCCCCcchHHHHHHhcC-c---ccccc--cccccCCCHH
Q 006794 562 MGISALSH--AEQLNLQVLSLSSCSEVSNKSMPALKKLGK-T---LVGLN--LQNCNSINSS 615 (631)
Q Consensus 562 ~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~-~---L~~L~--l~~c~~l~~~ 615 (631)
.+...+.. ..+++|++|++++|. |++.+...+..... . |+.+. +.+ +.+++.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~~~~~~L~~l~~ll~~-~~~~~~ 285 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLGGAAEGGARVVVSLTEG-TAVSEY 285 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHCC------CEEECCCC-----CHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHHhcCCCccchhhHhhhcC-CccCHH
Confidence 77666542 156788888888865 77777776655421 1 55555 444 445544
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.39 E-value=5.6e-15 Score=143.61 Aligned_cols=231 Identities=16% Similarity=0.107 Sum_probs=137.4
Q ss_pred CCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHH-HHHHHHhcCCCCeEeccCCCCCchhhHHHHHhccc
Q 006794 335 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNG-LVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSA 413 (631)
Q Consensus 335 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 413 (631)
++|++|+++++. +.... ......+++|++|+++++ .+...+ .......+++|+.|+++++.- .... .. ...+
T Consensus 28 ~~l~~L~L~~n~-l~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l~--~~-~~~l 100 (306)
T 2z66_A 28 SSATRLELESNK-LQSLP-HGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMS--SN-FLGL 100 (306)
T ss_dssp TTCCEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSE-EEEE--EE-EETC
T ss_pred CCCCEEECCCCc-cCccC-HhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCcc-ccCh--hh-cCCC
Confidence 689999999875 44322 122356789999999886 443211 011223579999999988652 2111 00 1224
Q ss_pred CCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcc
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 493 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 493 (631)
++|++|+++++.... ... ...+..+++|++|++++|.. .... ......+++|+.|+++++ .+++..+...+..++
T Consensus 101 ~~L~~L~l~~n~l~~-~~~-~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQ-MSE-FSVFLSLRNLIYLDISHTHT-RVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELR 175 (306)
T ss_dssp TTCCEEECTTSEEES-STT-TTTTTTCTTCCEEECTTSCC-EECS-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCT
T ss_pred CCCCEEECCCCcccc-ccc-chhhhhccCCCEEECCCCcC-Cccc-hhhcccCcCCCEEECCCC-ccccccchhHHhhCc
Confidence 889999998864322 111 12345788899999988752 2111 112234588888888873 443322222233333
Q ss_pred cCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccC-
Q 006794 494 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQ- 572 (631)
Q Consensus 494 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~- 572 (631)
+|++|+++++ .++......+. .+++|+.|++++ +.++......+ ..+++|+.|++++|.+++.....+. .+
T Consensus 176 -~L~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~~~ 247 (306)
T 2z66_A 176 -NLTFLDLSQC-QLEQLSPTAFN--SLSSLQVLNMSH-NNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQ--HFP 247 (306)
T ss_dssp -TCCEEECTTS-CCCEECTTTTT--TCTTCCEEECTT-SCCSBCCSGGG-TTCTTCCEEECTTSCCCBCSSSSCC--CCC
T ss_pred -CCCEEECCCC-CcCCcCHHHhc--CCCCCCEEECCC-CccCccChhhc-cCcccCCEeECCCCCCcccCHHHHH--hhh
Confidence 7888888875 45443222222 367888888887 46654332222 3478888888888887765554444 45
Q ss_pred CCccEEeccCCCC
Q 006794 573 LNLQVLSLSSCSE 585 (631)
Q Consensus 573 ~~L~~L~l~~c~~ 585 (631)
++|++|++++|+-
T Consensus 248 ~~L~~L~L~~N~~ 260 (306)
T 2z66_A 248 SSLAFLNLTQNDF 260 (306)
T ss_dssp TTCCEEECTTCCE
T ss_pred ccCCEEEccCCCe
Confidence 3788888888663
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.37 E-value=9.5e-14 Score=136.45 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=71.7
Q ss_pred CCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcC
Q 006794 467 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 546 (631)
Q Consensus 467 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 546 (631)
++|+.|++++ +.++...... +..++ +|++|+++++ .++......+. .+++|++|++++| .++... .....+
T Consensus 192 ~~L~~L~l~~-n~l~~~~~~~-~~~l~-~L~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~lp--~~l~~l 262 (330)
T 1xku_A 192 PSLTELHLDG-NKITKVDAAS-LKGLN-NLAKLGLSFN-SISAVDNGSLA--NTPHLRELHLNNN-KLVKVP--GGLADH 262 (330)
T ss_dssp TTCSEEECTT-SCCCEECTGG-GTTCT-TCCEEECCSS-CCCEECTTTGG--GSTTCCEEECCSS-CCSSCC--TTTTTC
T ss_pred ccCCEEECCC-CcCCccCHHH-hcCCC-CCCEEECCCC-cCceeChhhcc--CCCCCCEEECCCC-cCccCC--hhhccC
Confidence 5566666665 2333221111 12222 6777777663 34433222222 4678888888884 665321 112457
Q ss_pred CcCCEEEecCCccChhhHHhhhh----ccCCCccEEeccCCCCCCcchH-HHHHHhcCcccccccccc
Q 006794 547 MFLSYLDVSKCAITDMGISALSH----AEQLNLQVLSLSSCSEVSNKSM-PALKKLGKTLVGLNLQNC 609 (631)
Q Consensus 547 ~~L~~L~L~~~~l~~~~~~~l~~----~~~~~L~~L~l~~c~~l~~~~~-~~l~~~~~~L~~L~l~~c 609 (631)
++|+.|++++|.++..+...+.. ...+.++.|++++++ ++...+ +.....+++++.++++++
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 88999999988877654444421 134678888998876 432222 122233566888888773
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.36 E-value=3.3e-14 Score=139.87 Aligned_cols=180 Identities=16% Similarity=0.128 Sum_probs=97.0
Q ss_pred CCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcc
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 493 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 493 (631)
++|+.|+++++.. .........+..+ +|++|++++|.. +... ....++|+.|++++ +.++...... +..++
T Consensus 147 ~~L~~L~l~~n~l-~~~~~~~~~~~~l-~L~~L~l~~n~l-~~l~----~~~~~~L~~L~l~~-n~i~~~~~~~-l~~l~ 217 (332)
T 2ft3_A 147 RNMNCIEMGGNPL-ENSGFEPGAFDGL-KLNYLRISEAKL-TGIP----KDLPETLNELHLDH-NKIQAIELED-LLRYS 217 (332)
T ss_dssp SSCCEEECCSCCC-BGGGSCTTSSCSC-CCSCCBCCSSBC-SSCC----SSSCSSCSCCBCCS-SCCCCCCTTS-STTCT
T ss_pred ccCCEEECCCCcc-ccCCCCcccccCC-ccCEEECcCCCC-CccC----ccccCCCCEEECCC-CcCCccCHHH-hcCCC
Confidence 5666666665432 2111222222333 666666666542 2100 01125677777776 3333221111 11222
Q ss_pred cCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhc---
Q 006794 494 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHA--- 570 (631)
Q Consensus 494 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~--- 570 (631)
+|++|+++++ .++......+. .+++|+.|++++ +.++.... . ...+++|+.|++++|.++..+...+...
T Consensus 218 -~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~lp~-~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 218 -KLYRLGLGHN-QIRMIENGSLS--FLPTLRELHLDN-NKLSRVPA-G-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290 (332)
T ss_dssp -TCSCCBCCSS-CCCCCCTTGGG--GCTTCCEEECCS-SCCCBCCT-T-GGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred -CCCEEECCCC-cCCcCChhHhh--CCCCCCEEECCC-CcCeecCh-h-hhcCccCCEEECCCCCCCccChhHccccccc
Confidence 7888888774 44433222222 478899999988 46663221 1 3458999999999998887655544411
Q ss_pred -cCCCccEEeccCCCCCCcc-hHHHHHHhcCccccccccccc
Q 006794 571 -EQLNLQVLSLSSCSEVSNK-SMPALKKLGKTLVGLNLQNCN 610 (631)
Q Consensus 571 -~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~l~~c~ 610 (631)
..+.|+.|++++++ ++.. ..+.....+++|+.|++++|.
T Consensus 291 ~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 291 VKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 25678999999977 4321 222233456778999988853
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.35 E-value=6.9e-14 Score=135.88 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=37.5
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcC
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGK 599 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 599 (631)
+++|++|++++ +.++......+ ..+++|+.|++++|.+++.....+. .+++|+.|++++|. ++......+...++
T Consensus 174 l~~L~~L~Ls~-n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~~~~ 248 (306)
T 2z66_A 174 LRNLTFLDLSQ-CQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYK--CLNSLQVLDYSLNH-IMTSKKQELQHFPS 248 (306)
T ss_dssp CTTCCEEECTT-SCCCEECTTTT-TTCTTCCEEECTTSCCSBCCSGGGT--TCTTCCEEECTTSC-CCBCSSSSCCCCCT
T ss_pred CcCCCEEECCC-CCcCCcCHHHh-cCCCCCCEEECCCCccCccChhhcc--CcccCCEeECCCCC-CcccCHHHHHhhhc
Confidence 45555555555 24443222222 2255555555555554443222222 44555555555543 43332222222223
Q ss_pred cccccccccc
Q 006794 600 TLVGLNLQNC 609 (631)
Q Consensus 600 ~L~~L~l~~c 609 (631)
+|++|+++++
T Consensus 249 ~L~~L~L~~N 258 (306)
T 2z66_A 249 SLAFLNLTQN 258 (306)
T ss_dssp TCCEEECTTC
T ss_pred cCCEEEccCC
Confidence 4555555553
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.35 E-value=2.6e-12 Score=127.46 Aligned_cols=137 Identities=15% Similarity=0.082 Sum_probs=76.1
Q ss_pred CCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcc
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 493 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 493 (631)
++|+.|++++|.... . ....+..+++|++|++++|. +.... ..+...+++|+.|+++++ .++......+
T Consensus 174 ~~L~~L~l~~n~l~~-~--~~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n-~l~~~~~~~l----- 242 (353)
T 2z80_A 174 TFLEELEIDASDLQS-Y--EPKSLKSIQNVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRDT-DLDTFHFSEL----- 242 (353)
T ss_dssp CEEEEEEEEETTCCE-E--CTTTTTTCSEEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEESC-BCTTCCCC-------
T ss_pred CCCCEEECCCCCcCc-c--CHHHHhccccCCeecCCCCc-cccch-hhhhhhcccccEEECCCC-cccccccccc-----
Confidence 667777777654221 1 12234566777777777765 33222 223334577777777763 3322111100
Q ss_pred cCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHH---hcCCcCCEEEecCCccChhhHHhhhhc
Q 006794 494 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIG---NNCMFLSYLDVSKCAITDMGISALSHA 570 (631)
Q Consensus 494 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~~l~~~~~~~l~~~ 570 (631)
... . ....++.+++.+ ..+++..+..+. ..+++|+.|++++|.++......+.
T Consensus 243 -------------------~~~-~-~~~~l~~l~L~~-~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~-- 298 (353)
T 2z80_A 243 -------------------STG-E-TNSLIKKFTFRN-VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFD-- 298 (353)
T ss_dssp -------------------------CCCCCCEEEEES-CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTT--
T ss_pred -------------------ccc-c-ccchhhcccccc-ccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHh--
Confidence 000 1 245667777776 466665544432 4578888888888887743322223
Q ss_pred cCCCccEEeccCCCC
Q 006794 571 EQLNLQVLSLSSCSE 585 (631)
Q Consensus 571 ~~~~L~~L~l~~c~~ 585 (631)
.+++|++|++++|+-
T Consensus 299 ~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 299 RLTSLQKIWLHTNPW 313 (353)
T ss_dssp TCTTCCEEECCSSCB
T ss_pred cCCCCCEEEeeCCCc
Confidence 677888888888763
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.34 E-value=4e-13 Score=133.34 Aligned_cols=271 Identities=16% Similarity=0.130 Sum_probs=151.0
Q ss_pred CCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccC
Q 006794 335 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 414 (631)
Q Consensus 335 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 414 (631)
++|++|+++++. +...... ....+++|++|+++++ .++.... ..+..+++|++|+++++. ++.... .....++
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNS-DLQRCVNLQALVLTSN-GINTIEE-DSFSSLGSLEHLDLSYNY-LSNLSS--SWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSSCCH--HHHTTCT
T ss_pred ccCcEEECCCCc-CcccCHH-HhccCCCCCEEECCCC-ccCccCH-hhcCCCCCCCEEECCCCc-CCcCCH--hHhCCCc
Confidence 345555555543 3322111 1233466666666654 2322110 112345666666666643 222111 1112236
Q ss_pred CCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhccc
Q 006794 415 KLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKA 494 (631)
Q Consensus 415 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 494 (631)
+|++|+++++. +..++. ...+..+++|++|++++|..+.......+ ..+++|++|+++++ .++..... .+..++
T Consensus 125 ~L~~L~L~~n~-l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~- 198 (353)
T 2z80_A 125 SLTFLNLLGNP-YKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDAS-DLQSYEPK-SLKSIQ- 198 (353)
T ss_dssp TCSEEECTTCC-CSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEET-TCCEECTT-TTTTCS-
T ss_pred cCCEEECCCCC-CcccCc-hhhhccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCC-CcCccCHH-HHhccc-
Confidence 77777777653 222211 01245677888888877743332211122 24578888888873 44332111 122233
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHH--HhcCCcCCEEEecCCccChhhHHhhhh--c
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAI--GNNCMFLSYLDVSKCAITDMGISALSH--A 570 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l--~~~~~~L~~L~L~~~~l~~~~~~~l~~--~ 570 (631)
+|++|+++++ .++........ .+++|+.|++++ +.++......+ ...++.++.+++.++.+++..+..+.. .
T Consensus 199 ~L~~L~l~~n-~l~~~~~~~~~--~~~~L~~L~L~~-n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 199 NVSHLILHMK-QHILLLEIFVD--VTSSVECLELRD-TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274 (353)
T ss_dssp EEEEEEEECS-CSTTHHHHHHH--HTTTEEEEEEES-CBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred cCCeecCCCC-ccccchhhhhh--hcccccEEECCC-CccccccccccccccccchhhccccccccccCcchhhhHHHHh
Confidence 7899999885 45554433332 478999999998 46665322222 234788999999999999876655431 3
Q ss_pred cCCCccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCHH-HHHHHHhhc
Q 006794 571 EQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSS-TVARLVESL 624 (631)
Q Consensus 571 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~l 624 (631)
.+++|+.|++++|. ++... ..+...+++|++|++++++-..+. .+..+..+.
T Consensus 275 ~l~~L~~L~Ls~N~-l~~i~-~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~ 327 (353)
T 2z80_A 275 QISGLLELEFSRNQ-LKSVP-DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 327 (353)
T ss_dssp TCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred cccCCCEEECCCCC-CCccC-HHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHH
Confidence 78899999999975 76322 222345678999999997655554 366665554
No 62
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.34 E-value=8.3e-13 Score=129.69 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=58.7
Q ss_pred CCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHH--
Q 006794 466 CPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIG-- 543 (631)
Q Consensus 466 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~-- 543 (631)
+++|+.|++++ +.++..... .+..++ +|++|+++++ .++... ..+. .+++|++|++++ +.++......+.
T Consensus 215 l~~L~~L~Ls~-n~l~~~~~~-~~~~l~-~L~~L~L~~N-~l~~lp-~~l~--~l~~L~~L~l~~-N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 215 LNNLAKLGLSF-NSISAVDNG-SLANTP-HLRELHLNNN-KLVKVP-GGLA--DHKYIQVVYLHN-NNISAIGSNDFCPP 286 (330)
T ss_dssp CTTCCEEECCS-SCCCEECTT-TGGGST-TCCEEECCSS-CCSSCC-TTTT--TCSSCCEEECCS-SCCCCCCTTSSSCS
T ss_pred CCCCCEEECCC-CcCceeChh-hccCCC-CCCEEECCCC-cCccCC-hhhc--cCCCcCEEECCC-CcCCccChhhcCCc
Confidence 45666666665 233322111 111222 6777777664 333211 1111 467888888887 466654333322
Q ss_pred ---hcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCC
Q 006794 544 ---NNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSC 583 (631)
Q Consensus 544 ---~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c 583 (631)
...+.|+.|++++|.+....+..-....++.++.+++++|
T Consensus 287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 1247899999999987653332222236778999998874
No 63
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.34 E-value=9.9e-13 Score=112.37 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=59.9
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhc---CCcCCEEEecCCc-cChhhHHhhhhc
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNN---CMFLSYLDVSKCA-ITDMGISALSHA 570 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~L~~L~L~~~~-l~~~~~~~l~~~ 570 (631)
.|+.|++++|. +++.++..+. .+++|++|+|++|..++|.++..+... +++|++|+|++|. |||.++..+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-- 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-- 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG--
T ss_pred eEeEEeCcCCC-ccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh--
Confidence 45555555553 5555555443 356666666666666666666666541 3566666666663 6666666665
Q ss_pred cCCCccEEeccCCCCCCcchH--HHHHHhcCcc
Q 006794 571 EQLNLQVLSLSSCSEVSNKSM--PALKKLGKTL 601 (631)
Q Consensus 571 ~~~~L~~L~l~~c~~l~~~~~--~~l~~~~~~L 601 (631)
.+++|++|++++|+.||+..+ ..+....|++
T Consensus 137 ~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l 169 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169 (176)
T ss_dssp GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTC
T ss_pred cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCc
Confidence 566777777777777766543 3344444443
No 64
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.34 E-value=1.9e-14 Score=139.92 Aligned_cols=255 Identities=12% Similarity=0.016 Sum_probs=147.1
Q ss_pred CCcceEeccCCCCCCh-HHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhccc
Q 006794 335 QKLVSLTIASGGGVTD-VSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSA 413 (631)
Q Consensus 335 ~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 413 (631)
.++++|+++++. +.. ..+......+++|++|+++++..+.... ...+..+++|++|+++++.-..... . ....+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p--~-~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNVSGAIP--D-FLSQI 124 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEECCEEECC--G-GGGGC
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCCeeCCcCC--H-HHhCC
Confidence 456677776654 321 0111223446777777777422222111 1112457778888887654211111 0 01223
Q ss_pred CCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcc
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 493 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 493 (631)
++|++|++++|...... +..+..+++|++|++++|.. +......+....++|+.|+++++ .++...... +...
T Consensus 125 ~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~-~~~l- 197 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTL---PPSISSLPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPT-FANL- 197 (313)
T ss_dssp TTCCEEECCSSEEESCC---CGGGGGCTTCCEEECCSSCC-EEECCGGGGCCCTTCCEEECCSS-EEEEECCGG-GGGC-
T ss_pred CCCCEEeCCCCccCCcC---ChHHhcCCCCCeEECcCCcc-cCcCCHHHhhhhhcCcEEECcCC-eeeccCChH-HhCC-
Confidence 78888888876433222 23345688888888888753 21111223322238899999873 333221111 1122
Q ss_pred cCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCC
Q 006794 494 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 573 (631)
Q Consensus 494 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~ 573 (631)
.|+.|+++++ .++......+. .+++|+.|++++ +.++..... ...+++|++|++++|.+++.....+. .++
T Consensus 198 -~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~ 268 (313)
T 1ogq_A 198 -NLAFVDLSRN-MLEGDASVLFG--SDKNTQKIHLAK-NSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLT--QLK 268 (313)
T ss_dssp -CCSEEECCSS-EEEECCGGGCC--TTSCCSEEECCS-SEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGG--GCT
T ss_pred -cccEEECcCC-cccCcCCHHHh--cCCCCCEEECCC-CceeeecCc--ccccCCCCEEECcCCcccCcCChHHh--cCc
Confidence 5999999885 44433222222 478999999998 466532211 34589999999999998865555555 788
Q ss_pred CccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCC
Q 006794 574 NLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSIN 613 (631)
Q Consensus 574 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~ 613 (631)
+|++|++++|. ++... +.. ...++|+.+++++++.+.
T Consensus 269 ~L~~L~Ls~N~-l~~~i-p~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 269 FLHSLNVSFNN-LCGEI-PQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp TCCEEECCSSE-EEEEC-CCS-TTGGGSCGGGTCSSSEEE
T ss_pred CCCEEECcCCc-ccccC-CCC-ccccccChHHhcCCCCcc
Confidence 99999999965 65432 222 456679999999866443
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.31 E-value=4.6e-13 Score=130.53 Aligned_cols=236 Identities=19% Similarity=0.166 Sum_probs=155.3
Q ss_pred HHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCcccc
Q 006794 353 LEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMAT 432 (631)
Q Consensus 353 ~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 432 (631)
...+...+++|++|+++++ .+..... ..+..+++|+.|+++++.-..... ...+++|+.|++++|. +..+
T Consensus 26 ~~~~~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~n~-l~~l-- 95 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNNNY-VQEL-- 95 (317)
T ss_dssp HHHHHTTGGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTSCCEEEEE-----ETTCTTCCEEECCSSE-EEEE--
T ss_pred HHHHhccCCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCCcCCcchh-----hhhcCCCCEEECcCCc-cccc--
Confidence 3455556678999999886 4433222 233568899999998865322222 2234899999999864 3322
Q ss_pred ccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHH
Q 006794 433 EMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVV 512 (631)
Q Consensus 433 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~ 512 (631)
...++|++|++++|. ++... ...+++|+.|++++ +.++...... +..++ +|++|+++++ .++....
T Consensus 96 -----~~~~~L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~-N~l~~~~~~~-~~~l~-~L~~L~Ls~N-~l~~~~~ 161 (317)
T 3o53_A 96 -----LVGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLAN-NKITMLRDLD-EGCRS-RVQYLDLKLN-EIDTVNF 161 (317)
T ss_dssp -----EECTTCCEEECCSSC-CSEEE----ECCCSSCEEEECCS-SCCCSGGGBC-TGGGS-SEEEEECTTS-CCCEEEG
T ss_pred -----cCCCCcCEEECCCCc-cCCcC----ccccCCCCEEECCC-CCCCCccchh-hhccC-CCCEEECCCC-CCCcccH
Confidence 245899999999986 33211 22468999999998 4554322111 12233 8999999995 6665544
Q ss_pred HHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHH
Q 006794 513 LALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMP 592 (631)
Q Consensus 513 ~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~ 592 (631)
..+.. .+++|++|++++ +.++... .. ..+++|++|++++|.++..... +. .+++|+.|++++|. ++. ++
T Consensus 162 ~~~~~-~l~~L~~L~L~~-N~l~~~~--~~-~~l~~L~~L~Ls~N~l~~l~~~-~~--~l~~L~~L~L~~N~-l~~--l~ 230 (317)
T 3o53_A 162 AELAA-SSDTLEHLNLQY-NFIYDVK--GQ-VVFAKLKTLDLSSNKLAFMGPE-FQ--SAAGVTWISLRNNK-LVL--IE 230 (317)
T ss_dssp GGGGG-GTTTCCEEECTT-SCCCEEE--CC-CCCTTCCEEECCSSCCCEECGG-GG--GGTTCSEEECTTSC-CCE--EC
T ss_pred HHHhh-ccCcCCEEECCC-CcCcccc--cc-cccccCCEEECCCCcCCcchhh-hc--ccCcccEEECcCCc-ccc--hh
Confidence 44443 579999999999 4776541 11 2389999999999998864333 33 67899999999975 764 23
Q ss_pred HHHHhcCcccccccccccCCCHHHHHHHHhhc
Q 006794 593 ALKKLGKTLVGLNLQNCNSINSSTVARLVESL 624 (631)
Q Consensus 593 ~l~~~~~~L~~L~l~~c~~l~~~~~~~l~~~l 624 (631)
.....+++|+.|++++ +.++...+......+
T Consensus 231 ~~~~~l~~L~~L~l~~-N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 231 KALRFSQNLEHFDLRG-NGFHCGTLRDFFSKN 261 (317)
T ss_dssp TTCCCCTTCCEEECTT-CCCBHHHHHHHHHTC
T ss_pred hHhhcCCCCCEEEccC-CCccCcCHHHHHhcc
Confidence 2234567899999999 567744444444433
No 66
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=5.3e-11 Score=117.76 Aligned_cols=193 Identities=19% Similarity=0.208 Sum_probs=131.1
Q ss_pred CCcCeEEcCCCCCCCHHHHHHHHHhc----CCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCcccccccc
Q 006794 361 LNLKQMCLRKCCFVSDNGLVAFSKAA----GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPM 436 (631)
Q Consensus 361 ~~L~~L~l~~~~~~~~~~l~~l~~~~----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 436 (631)
+.|+.|++++| .+++.....+...+ ++|++|++++|. +++.+...+.
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~--------------------------- 122 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLL--------------------------- 122 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTH---------------------------
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHH---------------------------
Confidence 67888888775 46666555554431 467777777654 4444433221
Q ss_pred CCCCCCCceEeccCCCCCCHHHHHHHhh----cCCCCcEEecccccCCCchhhHHHHh---hcccCccEEecCCCCCCch
Q 006794 437 LSPNCSLRSLSIRNCPGFGNASLAMLGK----LCPQLQHVDLSGLYGITDVGIFPLLE---SCKAGLVKVNLSGCLNLTD 509 (631)
Q Consensus 437 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~~L~~L~l~~c~~l~~ 509 (631)
..+++|++|++++|. +++.....++. ..++|++|++++ +.+++.+...+.. .++ +|++|+|++| .+++
T Consensus 123 -~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N-~l~~ 197 (372)
T 3un9_A 123 -PVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSN-NPLTAAGVAVLMEGLAGNT-SVTHLSLLHT-GLGD 197 (372)
T ss_dssp -HHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCS-SCCHHHHHHHHHHHHHTCS-SCCEEECTTS-SCHH
T ss_pred -HHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCC-CCCChHHHHHHHHHHhcCC-CcCEEeCCCC-CCCc
Confidence 123467778888874 77776666653 358899999999 5788877766654 344 8999999995 6888
Q ss_pred HHHHHHHhh--cCcccCeecccCCCCCChHHHHHHHh---cCCcCCEEEecCCccChhhHHhhhhccCCC---ccEEe--
Q 006794 510 EVVLALARL--HSETLELLNLDGCRKITDASLVAIGN---NCMFLSYLDVSKCAITDMGISALSHAEQLN---LQVLS-- 579 (631)
Q Consensus 510 ~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~---L~~L~-- 579 (631)
.+...+... ..++|+.|+|++ +.+++.+...+.. .+++|++|+|++|.|++.++..+....... |+.+.
T Consensus 198 ~g~~~L~~~L~~~~~L~~L~Ls~-N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~l 276 (372)
T 3un9_A 198 EGLELLAAQLDRNRQLQELNVAY-NGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSL 276 (372)
T ss_dssp HHHHHHHHHGGGCSCCCEEECCS-SCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCC
T ss_pred HHHHHHHHHHhcCCCcCeEECCC-CCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhh
Confidence 887665531 467999999999 5999988777654 469999999999999999988887332222 67776
Q ss_pred ccCCCCCCcc
Q 006794 580 LSSCSEVSNK 589 (631)
Q Consensus 580 l~~c~~l~~~ 589 (631)
+.++ .+++.
T Consensus 277 l~~~-~~~~~ 285 (372)
T 3un9_A 277 TEGT-AVSEY 285 (372)
T ss_dssp C-----CHHH
T ss_pred hcCC-ccCHH
Confidence 5553 34433
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.30 E-value=8e-12 Score=131.77 Aligned_cols=266 Identities=17% Similarity=0.156 Sum_probs=157.3
Q ss_pred CCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccC
Q 006794 255 RNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGL 334 (631)
Q Consensus 255 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 334 (631)
.+++.|+++++.- .. +....++.++.|++.++.+.... ..+++|+.|+++++.. +. +. ..+
T Consensus 40 ~~l~~L~ls~n~L-~~-----lp~~l~~~L~~L~L~~N~l~~lp-----~~l~~L~~L~Ls~N~l-~~-----lp--~~l 100 (622)
T 3g06_A 40 NGNAVLNVGESGL-TT-----LPDCLPAHITTLVIPDNNLTSLP-----ALPPELRTLEVSGNQL-TS-----LP--VLP 100 (622)
T ss_dssp HCCCEEECCSSCC-SC-----CCSCCCTTCSEEEECSCCCSCCC-----CCCTTCCEEEECSCCC-SC-----CC--CCC
T ss_pred CCCcEEEecCCCc-Cc-----cChhhCCCCcEEEecCCCCCCCC-----CcCCCCCEEEcCCCcC-Cc-----CC--CCC
Confidence 3688898887652 21 11112234888888888776432 2467888888887742 21 11 145
Q ss_pred CCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccC
Q 006794 335 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 414 (631)
Q Consensus 335 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 414 (631)
++|++|+++++. +.... ..+++|+.|+++++. ++.. ...+++|++|++++|. ++... ...+
T Consensus 101 ~~L~~L~Ls~N~-l~~l~-----~~l~~L~~L~L~~N~-l~~l-----p~~l~~L~~L~Ls~N~-l~~l~------~~~~ 161 (622)
T 3g06_A 101 PGLLELSIFSNP-LTHLP-----ALPSGLCKLWIFGNQ-LTSL-----PVLPPGLQELSVSDNQ-LASLP------ALPS 161 (622)
T ss_dssp TTCCEEEECSCC-CCCCC-----CCCTTCCEEECCSSC-CSCC-----CCCCTTCCEEECCSSC-CSCCC------CCCT
T ss_pred CCCCEEECcCCc-CCCCC-----CCCCCcCEEECCCCC-CCcC-----CCCCCCCCEEECcCCc-CCCcC------CccC
Confidence 788888888764 33211 135778888887753 3221 1124778888888764 32211 1236
Q ss_pred CCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhccc
Q 006794 415 KLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKA 494 (631)
Q Consensus 415 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 494 (631)
+|+.|++++|. +..++ ..+++|+.|++++|. ++. +....++|+.|+++++ .++.-. . ..+
T Consensus 162 ~L~~L~L~~N~-l~~l~------~~~~~L~~L~Ls~N~-l~~-----l~~~~~~L~~L~L~~N-~l~~l~--~----~~~ 221 (622)
T 3g06_A 162 ELCKLWAYNNQ-LTSLP------MLPSGLQELSVSDNQ-LAS-----LPTLPSELYKLWAYNN-RLTSLP--A----LPS 221 (622)
T ss_dssp TCCEEECCSSC-CSCCC------CCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCSSCC--C----CCT
T ss_pred CCCEEECCCCC-CCCCc------ccCCCCcEEECCCCC-CCC-----CCCccchhhEEECcCC-cccccC--C----CCC
Confidence 78888887753 33332 346788888888775 221 1123477888888773 333211 1 113
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 574 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~ 574 (631)
+|+.|+++++ .++... . .+++|+.|++++ +.++... ..+++|+.|+|++|.++.. ...+. .+++
T Consensus 222 ~L~~L~Ls~N-~L~~lp-----~-~l~~L~~L~Ls~-N~L~~lp-----~~~~~L~~L~Ls~N~L~~l-p~~l~--~l~~ 285 (622)
T 3g06_A 222 GLKELIVSGN-RLTSLP-----V-LPSELKELMVSG-NRLTSLP-----MLPSGLLSLSVYRNQLTRL-PESLI--HLSS 285 (622)
T ss_dssp TCCEEECCSS-CCSCCC-----C-CCTTCCEEECCS-SCCSCCC-----CCCTTCCEEECCSSCCCSC-CGGGG--GSCT
T ss_pred CCCEEEccCC-ccCcCC-----C-CCCcCcEEECCC-CCCCcCC-----cccccCcEEeCCCCCCCcC-CHHHh--hccc
Confidence 7888888774 555422 2 467888888887 4665322 2467888888888877642 22233 6778
Q ss_pred ccEEeccCCCCCCcchHHHHH
Q 006794 575 LQVLSLSSCSEVSNKSMPALK 595 (631)
Q Consensus 575 L~~L~l~~c~~l~~~~~~~l~ 595 (631)
|+.|++++|+ ++......+.
T Consensus 286 L~~L~L~~N~-l~~~~~~~l~ 305 (622)
T 3g06_A 286 ETTVNLEGNP-LSERTLQALR 305 (622)
T ss_dssp TCEEECCSCC-CCHHHHHHHH
T ss_pred cCEEEecCCC-CCCcCHHHHH
Confidence 8888888865 6655554444
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.28 E-value=8.2e-12 Score=131.68 Aligned_cols=266 Identities=15% Similarity=0.083 Sum_probs=177.9
Q ss_pred CCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhcccceeccccccchhhHHHHhhcccc
Q 006794 229 PNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKA 308 (631)
Q Consensus 229 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 308 (631)
.+++.|+++++ .++... ..+ .++|++|+++++. +.... .. .+.|+.|+++++.++... ...++
T Consensus 40 ~~l~~L~ls~n-~L~~lp-~~l---~~~L~~L~L~~N~-l~~lp-----~~-l~~L~~L~Ls~N~l~~lp-----~~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLP-DCL---PAHITTLVIPDNN-LTSLP-----AL-PPELRTLEVSGNQLTSLP-----VLPPG 102 (622)
T ss_dssp HCCCEEECCSS-CCSCCC-SCC---CTTCSEEEECSCC-CSCCC-----CC-CTTCCEEEECSCCCSCCC-----CCCTT
T ss_pred CCCcEEEecCC-CcCccC-hhh---CCCCcEEEecCCC-CCCCC-----Cc-CCCCCEEEcCCCcCCcCC-----CCCCC
Confidence 46999999974 343211 111 3689999999875 32211 12 234999999999887533 26789
Q ss_pred ccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCC
Q 006794 309 LTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGS 388 (631)
Q Consensus 309 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 388 (631)
|+.|+++++....-. ..+++|+.|+++++. +.. +...+++|++|++++|. ++.. . ..+++
T Consensus 103 L~~L~Ls~N~l~~l~--------~~l~~L~~L~L~~N~-l~~-----lp~~l~~L~~L~Ls~N~-l~~l--~---~~~~~ 162 (622)
T 3g06_A 103 LLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQ-LTS-----LPVLPPGLQELSVSDNQ-LASL--P---ALPSE 162 (622)
T ss_dssp CCEEEECSCCCCCCC--------CCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSCC--C---CCCTT
T ss_pred CCEEECcCCcCCCCC--------CCCCCcCEEECCCCC-CCc-----CCCCCCCCCEEECcCCc-CCCc--C---CccCC
Confidence 999999887432211 146889999999875 433 22235899999999974 3321 1 13578
Q ss_pred CCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCC
Q 006794 389 LEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQ 468 (631)
Q Consensus 389 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 468 (631)
|+.|+++++. ++... ..+++|+.|++++|. +..++ ...++|+.|++++|.. +. +...+++
T Consensus 163 L~~L~L~~N~-l~~l~------~~~~~L~~L~Ls~N~-l~~l~------~~~~~L~~L~L~~N~l-~~-----l~~~~~~ 222 (622)
T 3g06_A 163 LCKLWAYNNQ-LTSLP------MLPSGLQELSVSDNQ-LASLP------TLPSELYKLWAYNNRL-TS-----LPALPSG 222 (622)
T ss_dssp CCEEECCSSC-CSCCC------CCCTTCCEEECCSSC-CSCCC------CCCTTCCEEECCSSCC-SS-----CCCCCTT
T ss_pred CCEEECCCCC-CCCCc------ccCCCCcEEECCCCC-CCCCC------CccchhhEEECcCCcc-cc-----cCCCCCC
Confidence 9999999865 33322 334899999999964 33332 2358999999999863 31 2224589
Q ss_pred CcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCc
Q 006794 469 LQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMF 548 (631)
Q Consensus 469 L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 548 (631)
|+.|++++ +.++.-. ..+ ++|+.|+++++ .++... . .+++|+.|++++ +.++... .. ...+++
T Consensus 223 L~~L~Ls~-N~L~~lp-----~~l-~~L~~L~Ls~N-~L~~lp-----~-~~~~L~~L~Ls~-N~L~~lp-~~-l~~l~~ 285 (622)
T 3g06_A 223 LKELIVSG-NRLTSLP-----VLP-SELKELMVSGN-RLTSLP-----M-LPSGLLSLSVYR-NQLTRLP-ES-LIHLSS 285 (622)
T ss_dssp CCEEECCS-SCCSCCC-----CCC-TTCCEEECCSS-CCSCCC-----C-CCTTCCEEECCS-SCCCSCC-GG-GGGSCT
T ss_pred CCEEEccC-CccCcCC-----CCC-CcCcEEECCCC-CCCcCC-----c-ccccCcEEeCCC-CCCCcCC-HH-Hhhccc
Confidence 99999998 4555321 122 48999999995 555321 1 368999999999 4777332 22 345999
Q ss_pred CCEEEecCCccChhhHHhhh
Q 006794 549 LSYLDVSKCAITDMGISALS 568 (631)
Q Consensus 549 L~~L~L~~~~l~~~~~~~l~ 568 (631)
|+.|+|++|.+++.....+.
T Consensus 286 L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 286 ETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TCEEECCSCCCCHHHHHHHH
T ss_pred cCEEEecCCCCCCcCHHHHH
Confidence 99999999999886665544
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.27 E-value=7.3e-13 Score=136.85 Aligned_cols=215 Identities=14% Similarity=0.074 Sum_probs=117.8
Q ss_pred cCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCC
Q 006794 359 GCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLS 438 (631)
Q Consensus 359 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 438 (631)
.+++|+.|+++++. ++... . +..+++|+.|++++|. ++... ..++|+.|++++|... ... ..
T Consensus 56 ~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~-------~~~~L~~L~L~~N~l~-~~~-----~~ 117 (487)
T 3oja_A 56 PFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNNY-VQELL-------VGPSIETLHAANNNIS-RVS-----CS 117 (487)
T ss_dssp TCTTCCEEECTTSC-CEEEE--E-CTTCTTCCEEECCSSE-EEEEE-------ECTTCCEEECCSSCCC-CEE-----EC
T ss_pred CCCCCCEEEeeCCC-CCCCc--c-cccCCCCCEEEecCCc-CCCCC-------CCCCcCEEECcCCcCC-CCC-----cc
Confidence 34556666665542 21110 0 2345666666666543 22211 1166777777665322 221 12
Q ss_pred CCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhh
Q 006794 439 PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARL 518 (631)
Q Consensus 439 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 518 (631)
.+++|+.|++++|. ++......+ ..+++|+.|++++ +.++......+...++ +|++|+++++ .++... ...
T Consensus 118 ~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~-~L~~L~Ls~N-~l~~~~--~~~-- 188 (487)
T 3oja_A 118 RGQGKKNIYLANNK-ITMLRDLDE-GCRSRVQYLDLKL-NEIDTVNFAELAASSD-TLEHLNLQYN-FIYDVK--GQV-- 188 (487)
T ss_dssp CCSSCEEEECCSSC-CCSGGGBCG-GGGSSEEEEECTT-SCCCEEEGGGGGGGTT-TCCEEECTTS-CCCEEE--CCC--
T ss_pred ccCCCCEEECCCCC-CCCCCchhh-cCCCCCCEEECCC-CCCCCcChHHHhhhCC-cccEEecCCC-cccccc--ccc--
Confidence 35677777777765 222111111 2347777777777 4555444333333333 7888888774 444331 111
Q ss_pred cCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhc
Q 006794 519 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLG 598 (631)
Q Consensus 519 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 598 (631)
.+++|+.|++++ +.++..... ...+++|+.|+|++|.++... ..+ ..+++|+.|++++|+ ++...++.+...+
T Consensus 189 ~l~~L~~L~Ls~-N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~lp-~~l--~~l~~L~~L~l~~N~-l~c~~~~~~~~~l 261 (487)
T 3oja_A 189 VFAKLKTLDLSS-NKLAFMGPE--FQSAAGVTWISLRNNKLVLIE-KAL--RFSQNLEHFDLRGNG-FHCGTLRDFFSKN 261 (487)
T ss_dssp CCTTCCEEECCS-SCCCEECGG--GGGGTTCSEEECTTSCCCEEC-TTC--CCCTTCCEEECTTCC-BCHHHHHHHHTTC
T ss_pred cCCCCCEEECCC-CCCCCCCHh--HcCCCCccEEEecCCcCcccc-hhh--ccCCCCCEEEcCCCC-CcCcchHHHHHhC
Confidence 367888888888 467653322 234788888888888877521 112 256788888888866 5544555545555
Q ss_pred Ccccccccc
Q 006794 599 KTLVGLNLQ 607 (631)
Q Consensus 599 ~~L~~L~l~ 607 (631)
+.|+.++++
T Consensus 262 ~~L~~l~~~ 270 (487)
T 3oja_A 262 QRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHH
T ss_pred CCCcEEecc
Confidence 566666654
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.27 E-value=2.4e-13 Score=133.59 Aligned_cols=247 Identities=14% Similarity=0.081 Sum_probs=148.1
Q ss_pred CCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccC
Q 006794 335 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 414 (631)
Q Consensus 335 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 414 (631)
++|+.|+++++. +..... .....+++|++|+++++ .++.... ..+..+++|++|+++++. ++.... ...+
T Consensus 54 ~~l~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~l~~-----~~~~ 123 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELRK-DDFKGLQHLYALVLVNN-KISKIHE-KAFSPLRKLQKLYISKNH-LVEIPP-----NLPS 123 (332)
T ss_dssp TTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSS-CCCEECG-GGSTTCTTCCEEECCSSC-CCSCCS-----SCCT
T ss_pred CCCeEEECCCCc-CCccCH-hHhhCCCCCcEEECCCC-ccCccCH-hHhhCcCCCCEEECCCCc-CCccCc-----cccc
Confidence 456666666553 332211 11234577777777765 3332111 112356778888887754 221111 1127
Q ss_pred CCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhccc
Q 006794 415 KLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKA 494 (631)
Q Consensus 415 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 494 (631)
+|++|+++++.. ..+ ....+..+++|++|++++|..-...........+ +|+.|+++++ .++.-. ...++
T Consensus 124 ~L~~L~l~~n~i-~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~-----~~~~~ 193 (332)
T 2ft3_A 124 SLVELRIHDNRI-RKV--PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIP-----KDLPE 193 (332)
T ss_dssp TCCEEECCSSCC-CCC--CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCC-----SSSCS
T ss_pred cCCEEECCCCcc-Ccc--CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccC-----ccccC
Confidence 899999988643 222 1223567999999999998632111111111222 8999999884 443211 11124
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 574 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~ 574 (631)
+|++|+++++ .++......+. .+++|+.|++++ +.++......+ ..+++|+.|++++|.++... ..+. .+++
T Consensus 194 ~L~~L~l~~n-~i~~~~~~~l~--~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~lp-~~l~--~l~~ 265 (332)
T 2ft3_A 194 TLNELHLDHN-KIQAIELEDLL--RYSKLYRLGLGH-NQIRMIENGSL-SFLPTLRELHLDNNKLSRVP-AGLP--DLKL 265 (332)
T ss_dssp SCSCCBCCSS-CCCCCCTTSST--TCTTCSCCBCCS-SCCCCCCTTGG-GGCTTCCEEECCSSCCCBCC-TTGG--GCTT
T ss_pred CCCEEECCCC-cCCccCHHHhc--CCCCCCEEECCC-CcCCcCChhHh-hCCCCCCEEECCCCcCeecC-hhhh--cCcc
Confidence 8999999985 55544333333 478999999999 57765443333 45899999999999987422 2233 6889
Q ss_pred ccEEeccCCCCCCcchHHHHHHh-----cCccccccccccc
Q 006794 575 LQVLSLSSCSEVSNKSMPALKKL-----GKTLVGLNLQNCN 610 (631)
Q Consensus 575 L~~L~l~~c~~l~~~~~~~l~~~-----~~~L~~L~l~~c~ 610 (631)
|+.|++++|. ++......+... .++|+.|++++++
T Consensus 266 L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 266 LQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CCEEECCCCC-CCccChhHccccccccccccccceEeecCc
Confidence 9999999965 766544333322 4568999999954
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.27 E-value=5.2e-13 Score=129.80 Aligned_cols=113 Identities=17% Similarity=0.213 Sum_probs=52.0
Q ss_pred CCCcCeEEcCCCCCCCHHHHHHH-HHhcCCCCeEeccCCCCCchh-hHHHHHhcccCCCcEEecccccCCCccccccccC
Q 006794 360 CLNLKQMCLRKCCFVSDNGLVAF-SKAAGSLEILQLEECNRVSQS-GILGVVSNSASKLKSLTLVKCMGIKDMATEMPML 437 (631)
Q Consensus 360 ~~~L~~L~l~~~~~~~~~~l~~l-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 437 (631)
+++|++|+++++. +++.....+ ...+++|++|+++++.-.... .+........++|++|+++++.. ... ....+
T Consensus 94 l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~--~~~~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNF--SCEQV 169 (312)
T ss_dssp TSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCC--CTTTC
T ss_pred cCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccc--hHHHh
Confidence 4566666666542 221111111 134566666666664321111 11111111226777777776542 221 11234
Q ss_pred CCCCCCceEeccCCCCCCHHHHHHHh--hcCCCCcEEeccc
Q 006794 438 SPNCSLRSLSIRNCPGFGNASLAMLG--KLCPQLQHVDLSG 476 (631)
Q Consensus 438 ~~~~~L~~L~l~~~~~~~~~~l~~l~--~~~~~L~~L~l~~ 476 (631)
..+++|++|++++|.......+..-. ..+++|++|++++
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~ 210 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC
Confidence 56777777777777533322221111 3446666666665
No 72
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.26 E-value=8.9e-13 Score=134.97 Aligned_cols=139 Identities=17% Similarity=0.089 Sum_probs=70.9
Q ss_pred CCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHh
Q 006794 438 SPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALAR 517 (631)
Q Consensus 438 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 517 (631)
..+++|++|++++|..+....... ...+++|+.|+++++ .++.-. . +..++ +|++|+++++ .++......+.
T Consensus 157 ~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~--~-~~~l~-~L~~L~Ls~N-~l~~~~~~~~~- 228 (440)
T 3zyj_A 157 NRIPSLRRLDLGELKRLSYISEGA-FEGLSNLRYLNLAMC-NLREIP--N-LTPLI-KLDELDLSGN-HLSAIRPGSFQ- 228 (440)
T ss_dssp TTCTTCCEEECCCCTTCCEECTTT-TTTCSSCCEEECTTS-CCSSCC--C-CTTCS-SCCEEECTTS-CCCEECTTTTT-
T ss_pred hhCcccCEeCCCCCCCcceeCcch-hhcccccCeecCCCC-cCcccc--c-cCCCc-ccCEEECCCC-ccCccChhhhc-
Confidence 345555555555543332211111 123355555555552 222110 0 11122 6666666663 44433222222
Q ss_pred hcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcc
Q 006794 518 LHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNK 589 (631)
Q Consensus 518 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~ 589 (631)
.+++|+.|++++ +.++......+ ..+++|+.|+|++|.++......+. .+++|+.|++++|+-.-+.
T Consensus 229 -~l~~L~~L~L~~-n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 229 -GLMHLQKLWMIQ-SQIQVIERNAF-DNLQSLVEINLAHNNLTLLPHDLFT--PLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp -TCTTCCEEECTT-CCCCEECTTSS-TTCTTCCEEECTTSCCCCCCTTTTS--SCTTCCEEECCSSCEECSS
T ss_pred -cCccCCEEECCC-CceeEEChhhh-cCCCCCCEEECCCCCCCccChhHhc--cccCCCEEEcCCCCccCCC
Confidence 367777777777 46655433222 3477788888888877654443333 5677888888776643333
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.25 E-value=1.9e-12 Score=124.26 Aligned_cols=206 Identities=17% Similarity=0.104 Sum_probs=116.6
Q ss_pred CCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCC
Q 006794 361 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 440 (631)
Q Consensus 361 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 440 (631)
++|++|+++++ .++.... ..+..+++|++|+++++. ++..... ....+++|+.|+++++..+..+. ...+..+
T Consensus 32 ~~l~~L~l~~n-~i~~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n~~l~~~~--~~~~~~l 104 (285)
T 1ozn_A 32 AASQRIFLHGN-RISHVPA-ASFRACRNLTILWLHSNV-LARIDAA--AFTGLALLEQLDLSDNAQLRSVD--PATFHGL 104 (285)
T ss_dssp TTCSEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECTT--TTTTCTTCCEEECCSCTTCCCCC--TTTTTTC
T ss_pred CCceEEEeeCC-cCCccCH-HHcccCCCCCEEECCCCc-cceeCHh--hcCCccCCCEEeCCCCCCccccC--HHHhcCC
Confidence 78999999885 3433211 122467889999998764 3322110 11223788888888876444442 2234567
Q ss_pred CCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcC
Q 006794 441 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 520 (631)
Q Consensus 441 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 520 (631)
++|++|++++|.. ..... .....+++|++|+++++ .++.... ..+..++ +|++|+++++ .++......+. .+
T Consensus 105 ~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~-~L~~L~l~~n-~l~~~~~~~~~--~l 176 (285)
T 1ozn_A 105 GRLHTLHLDRCGL-QELGP-GLFRGLAALQYLYLQDN-ALQALPD-DTFRDLG-NLTHLFLHGN-RISSVPERAFR--GL 176 (285)
T ss_dssp TTCCEEECTTSCC-CCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT-TCCEEECCSS-CCCEECTTTTT--TC
T ss_pred cCCCEEECCCCcC-CEECH-hHhhCCcCCCEEECCCC-cccccCH-hHhccCC-CccEEECCCC-cccccCHHHhc--Cc
Confidence 8888888888752 21111 11234578888888773 3332111 1112223 6777777774 44432222222 35
Q ss_pred cccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCC
Q 006794 521 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSE 585 (631)
Q Consensus 521 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~ 585 (631)
++|+.|++++ +.+++.....+. .+++|+.|++++|.+++.....+. .+++|+.|++++|+-
T Consensus 177 ~~L~~L~l~~-n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 177 HSLDRLLLHQ-NRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALA--PLRALQYLRLNDNPW 237 (285)
T ss_dssp TTCCEEECCS-SCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHT--TCTTCCEEECCSSCE
T ss_pred cccCEEECCC-CcccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcc--cCcccCEEeccCCCc
Confidence 6777777777 456544333332 367777777777776664444444 566777777777653
No 74
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.25 E-value=1.1e-12 Score=134.66 Aligned_cols=135 Identities=16% Similarity=0.086 Sum_probs=67.5
Q ss_pred CCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHh
Q 006794 438 SPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALAR 517 (631)
Q Consensus 438 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 517 (631)
..+++|++|++++|..+....... ...+++|+.|+++++ .+++.. . +..++ +|+.|+++++ .++......+.
T Consensus 168 ~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~--~-~~~l~-~L~~L~Ls~N-~l~~~~~~~~~- 239 (452)
T 3zyi_A 168 NRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMC-NIKDMP--N-LTPLV-GLEELEMSGN-HFPEIRPGSFH- 239 (452)
T ss_dssp TTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTS-CCSSCC--C-CTTCT-TCCEEECTTS-CCSEECGGGGT-
T ss_pred hcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCC-cccccc--c-ccccc-cccEEECcCC-cCcccCccccc-
Confidence 345555555555544332211111 112355555555552 222110 0 11122 6666666663 44433222222
Q ss_pred hcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCC
Q 006794 518 LHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSE 585 (631)
Q Consensus 518 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~ 585 (631)
.+++|+.|++++ +.++......+ ..+++|+.|+|++|.++......+. .+++|+.|++++|+-
T Consensus 240 -~l~~L~~L~L~~-n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 240 -GLSSLKKLWVMN-SQVSLIERNAF-DGLASLVELNLAHNNLSSLPHDLFT--PLRYLVELHLHHNPW 302 (452)
T ss_dssp -TCTTCCEEECTT-SCCCEECTTTT-TTCTTCCEEECCSSCCSCCCTTSST--TCTTCCEEECCSSCE
T ss_pred -CccCCCEEEeCC-CcCceECHHHh-cCCCCCCEEECCCCcCCccChHHhc--cccCCCEEEccCCCc
Confidence 366777777777 45654433222 3477777777777776654333333 566777777777663
No 75
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.25 E-value=5.2e-13 Score=130.51 Aligned_cols=107 Identities=15% Similarity=0.181 Sum_probs=48.7
Q ss_pred CCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCcccccccc---
Q 006794 360 CLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPM--- 436 (631)
Q Consensus 360 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--- 436 (631)
+++|++|+++++. +. .+...+..+++|++|++++|. ++... .. ...+++|+.|++++|.....++.....
T Consensus 103 l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~n~-l~~lp--~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 103 LSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLARNP-LRALP--AS-IASLNRLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp GTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEESCC-CCCCC--GG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred CCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCCCc-cccCc--HH-HhcCcCCCEEECCCCCCccccChhHhhccc
Confidence 4666666666642 22 111112345666666666643 22110 11 112366777777766555444322110
Q ss_pred ---CCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEeccc
Q 006794 437 ---LSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSG 476 (631)
Q Consensus 437 ---~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 476 (631)
+..+++|++|++++|. ++. +......+++|+.|++++
T Consensus 176 ~~~~~~l~~L~~L~L~~n~-l~~--lp~~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTG-IRS--LPASIANLQNLKSLKIRN 215 (328)
T ss_dssp CCCEEESTTCCEEEEEEEC-CCC--CCGGGGGCTTCCEEEEES
T ss_pred hhhhccCCCCCEEECcCCC-cCc--chHhhcCCCCCCEEEccC
Confidence 2235566666666553 221 111122345566666655
No 76
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.22 E-value=1.5e-12 Score=133.69 Aligned_cols=190 Identities=21% Similarity=0.189 Sum_probs=125.1
Q ss_pred CCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcc
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 493 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 493 (631)
++|+.|++++|. +..+. ...+..+++|++|++++|. +.... ......+++|+.|++++++.++..... .+..++
T Consensus 123 ~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~ 196 (452)
T 3zyi_A 123 ASLNTLELFDNW-LTVIP--SGAFEYLSKLRELWLRNNP-IESIP-SYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLF 196 (452)
T ss_dssp TTCCEEECCSSC-CSBCC--TTTSSSCTTCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCT
T ss_pred ccCCEEECCCCc-CCccC--hhhhcccCCCCEEECCCCC-cceeC-HhHHhcCCcccEEeCCCCCCccccChh-hccCCC
Confidence 677777777753 32221 2224568889999998875 33211 112335699999999987666533221 122333
Q ss_pred cCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCC
Q 006794 494 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 573 (631)
Q Consensus 494 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~ 573 (631)
+|+.|+++++ .++... .+. .+++|+.|++++ +.++......+ ..+++|+.|+|++|.++......+. .++
T Consensus 197 -~L~~L~L~~n-~l~~~~--~~~--~l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~--~l~ 266 (452)
T 3zyi_A 197 -NLKYLNLGMC-NIKDMP--NLT--PLVGLEELEMSG-NHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNAFD--GLA 266 (452)
T ss_dssp -TCCEEECTTS-CCSSCC--CCT--TCTTCCEEECTT-SCCSEECGGGG-TTCTTCCEEECTTSCCCEECTTTTT--TCT
T ss_pred -CCCEEECCCC-cccccc--ccc--ccccccEEECcC-CcCcccCcccc-cCccCCCEEEeCCCcCceECHHHhc--CCC
Confidence 8999999985 554331 122 478999999999 57776544444 3589999999999998876555555 788
Q ss_pred CccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCHHHHHHHH
Q 006794 574 NLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLV 621 (631)
Q Consensus 574 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~l~ 621 (631)
+|+.|++++|. ++...... ...+++|+.|++++++-..+-.+..+.
T Consensus 267 ~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~Np~~CdC~~~~l~ 312 (452)
T 3zyi_A 267 SLVELNLAHNN-LSSLPHDL-FTPLRYLVELHLHHNPWNCDCDILWLA 312 (452)
T ss_dssp TCCEEECCSSC-CSCCCTTS-STTCTTCCEEECCSSCEECSTTTHHHH
T ss_pred CCCEEECCCCc-CCccChHH-hccccCCCEEEccCCCcCCCCCchHHH
Confidence 99999999964 76433222 334678999999996644444444443
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=3.9e-12 Score=123.50 Aligned_cols=136 Identities=17% Similarity=0.202 Sum_probs=62.4
Q ss_pred CcceEeccCCCCCChHHHHHHhh--cCCCcCeEEcCCCCCCCHHHHHHHH-HhcCCCCeEeccCCCCCchhh-HHHHHhc
Q 006794 336 KLVSLTIASGGGVTDVSLEAMGK--GCLNLKQMCLRKCCFVSDNGLVAFS-KAAGSLEILQLEECNRVSQSG-ILGVVSN 411 (631)
Q Consensus 336 ~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~l~~l~-~~~~~L~~L~l~~~~~~~~~~-~~~~~~~ 411 (631)
.++.+.+.++. +.+..+..+.. .+++|++|+++++. +.......+. ..+++|++|+++++.-..... .......
T Consensus 65 ~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 45666666554 44444333221 23567777777653 2211111111 345677777777654222111 1111111
Q ss_pred ccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHH--HhhcCCCCcEEeccc
Q 006794 412 SASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAM--LGKLCPQLQHVDLSG 476 (631)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~--l~~~~~~L~~L~l~~ 476 (631)
.+++|++|++++|... .. ....+..+++|++|++++|.......+.. ....+++|++|++++
T Consensus 143 ~~~~L~~L~Ls~n~l~-~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSP-AF--SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp BCSCCCEEEEECCSSC-CC--CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred hccCCCEEEeeCCCcc-hh--hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence 3467777777765431 11 11233456667777777665332222211 112345555555555
No 78
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.22 E-value=1.3e-12 Score=133.73 Aligned_cols=192 Identities=18% Similarity=0.169 Sum_probs=126.8
Q ss_pred CCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcc
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 493 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 493 (631)
++|+.|++++|. +..+. ...+..+++|++|++++|. +..... .....+++|+.|++++++.++..... .+..++
T Consensus 112 ~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~ 185 (440)
T 3zyj_A 112 ANLNTLELFDNR-LTTIP--NGAFVYLSKLKELWLRNNP-IESIPS-YAFNRIPSLRRLDLGELKRLSYISEG-AFEGLS 185 (440)
T ss_dssp SSCCEEECCSSC-CSSCC--TTTSCSCSSCCEEECCSCC-CCEECT-TTTTTCTTCCEEECCCCTTCCEECTT-TTTTCS
T ss_pred ccCCEEECCCCc-CCeeC--HhHhhccccCceeeCCCCc-ccccCH-HHhhhCcccCEeCCCCCCCcceeCcc-hhhccc
Confidence 677777777753 33221 1235678899999998875 322111 12235699999999987666532221 122334
Q ss_pred cCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCC
Q 006794 494 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL 573 (631)
Q Consensus 494 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~ 573 (631)
+|++|+++++ .++... .+. .+++|+.|+|++ +.++......+ ..+++|+.|+|++|.++......+. .++
T Consensus 186 -~L~~L~L~~n-~l~~~~--~~~--~l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~--~l~ 255 (440)
T 3zyj_A 186 -NLRYLNLAMC-NLREIP--NLT--PLIKLDELDLSG-NHLSAIRPGSF-QGLMHLQKLWMIQSQIQVIERNAFD--NLQ 255 (440)
T ss_dssp -SCCEEECTTS-CCSSCC--CCT--TCSSCCEEECTT-SCCCEECTTTT-TTCTTCCEEECTTCCCCEECTTSST--TCT
T ss_pred -ccCeecCCCC-cCcccc--ccC--CCcccCEEECCC-CccCccChhhh-ccCccCCEEECCCCceeEEChhhhc--CCC
Confidence 8999999996 454322 122 578999999999 57776543333 3589999999999998876555555 788
Q ss_pred CccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCHHHHHHHHhh
Q 006794 574 NLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVES 623 (631)
Q Consensus 574 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 623 (631)
+|+.|++++|. ++...... ...+++|+.|++++++-..+-.+.++..+
T Consensus 256 ~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~Np~~CdC~l~~l~~~ 303 (440)
T 3zyj_A 256 SLVEINLAHNN-LTLLPHDL-FTPLHHLERIHLHHNPWNCNCDILWLSWW 303 (440)
T ss_dssp TCCEEECTTSC-CCCCCTTT-TSSCTTCCEEECCSSCEECSSTTHHHHHH
T ss_pred CCCEEECCCCC-CCccChhH-hccccCCCEEEcCCCCccCCCCchHHHHH
Confidence 99999999964 76443322 33457899999999665445444555443
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.19 E-value=1.9e-12 Score=133.74 Aligned_cols=226 Identities=19% Similarity=0.141 Sum_probs=151.9
Q ss_pred hcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccC
Q 006794 358 KGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPML 437 (631)
Q Consensus 358 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 437 (631)
..+++|+.|+++++ .++.... ..+..+++|+.|++++|.-..... ...+++|+.|++++|. +..+
T Consensus 31 ~~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~-l~~l------- 95 (487)
T 3oja_A 31 QSAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNNNY-VQEL------- 95 (487)
T ss_dssp TTGGGCCEEECCSS-CCCCCCG-GGGTTCTTCCEEECTTSCCEEEEE-----CTTCTTCCEEECCSSE-EEEE-------
T ss_pred ccCCCccEEEeeCC-cCCCCCH-HHHhCCCCCCEEEeeCCCCCCCcc-----cccCCCCCEEEecCCc-CCCC-------
Confidence 34568999999986 3433211 223468999999999976322222 2334999999999974 3333
Q ss_pred CCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHh
Q 006794 438 SPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALAR 517 (631)
Q Consensus 438 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 517 (631)
...++|++|++++|.... .. ...+++|+.|++++ +.++...... +..++ +|+.|+++++ .++......+..
T Consensus 96 ~~~~~L~~L~L~~N~l~~-~~----~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~-~L~~L~Ls~N-~l~~~~~~~l~~ 166 (487)
T 3oja_A 96 LVGPSIETLHAANNNISR-VS----CSRGQGKKNIYLAN-NKITMLRDLD-EGCRS-RVQYLDLKLN-EIDTVNFAELAA 166 (487)
T ss_dssp EECTTCCEEECCSSCCCC-EE----ECCCSSCEEEECCS-SCCCSGGGBC-GGGGS-SEEEEECTTS-CCCEEEGGGGGG
T ss_pred CCCCCcCEEECcCCcCCC-CC----ccccCCCCEEECCC-CCCCCCCchh-hcCCC-CCCEEECCCC-CCCCcChHHHhh
Confidence 235899999999986322 11 12468999999998 4554322111 12233 8999999994 676654444443
Q ss_pred hcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHh
Q 006794 518 LHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKL 597 (631)
Q Consensus 518 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 597 (631)
.+++|+.|++++ +.++... .. ..+++|+.|+|++|.+++.... +. .+++|+.|++++|. ++. ++.....
T Consensus 167 -~l~~L~~L~Ls~-N~l~~~~--~~-~~l~~L~~L~Ls~N~l~~~~~~-~~--~l~~L~~L~Ls~N~-l~~--lp~~l~~ 235 (487)
T 3oja_A 167 -SSDTLEHLNLQY-NFIYDVK--GQ-VVFAKLKTLDLSSNKLAFMGPE-FQ--SAAGVTWISLRNNK-LVL--IEKALRF 235 (487)
T ss_dssp -GTTTCCEEECTT-SCCCEEE--CC-CCCTTCCEEECCSSCCCEECGG-GG--GGTTCSEEECTTSC-CCE--ECTTCCC
T ss_pred -hCCcccEEecCC-Ccccccc--cc-ccCCCCCEEECCCCCCCCCCHh-Hc--CCCCccEEEecCCc-Ccc--cchhhcc
Confidence 579999999999 4776541 11 2489999999999998874333 33 67899999999965 653 3332345
Q ss_pred cCcccccccccccCCCHHHHHH
Q 006794 598 GKTLVGLNLQNCNSINSSTVAR 619 (631)
Q Consensus 598 ~~~L~~L~l~~c~~l~~~~~~~ 619 (631)
+++|+.|++++| .+....+..
T Consensus 236 l~~L~~L~l~~N-~l~c~~~~~ 256 (487)
T 3oja_A 236 SQNLEHFDLRGN-GFHCGTLRD 256 (487)
T ss_dssp CTTCCEEECTTC-CBCHHHHHH
T ss_pred CCCCCEEEcCCC-CCcCcchHH
Confidence 678999999994 566444433
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.19 E-value=9.6e-11 Score=113.33 Aligned_cols=191 Identities=18% Similarity=0.190 Sum_probs=127.2
Q ss_pred CCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCC
Q 006794 361 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 440 (631)
Q Consensus 361 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 440 (631)
++|++|++.++. +... .. ...+++|+.|++++|. +..... ...+++|+.|++++|. +..+ ..+..+
T Consensus 41 ~~L~~L~l~~~~-i~~l--~~-~~~l~~L~~L~L~~n~-i~~~~~----~~~l~~L~~L~L~~n~-l~~~----~~~~~l 106 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTI--EG-VQYLNNLIGLELKDNQ-ITDLAP----LKNLTKITELELSGNP-LKNV----SAIAGL 106 (308)
T ss_dssp HTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCSSC-CCCCGG----GTTCCSCCEEECCSCC-CSCC----GGGTTC
T ss_pred CCcCEEEeeCCC-ccCc--hh-hhccCCCCEEEccCCc-CCCChh----HccCCCCCEEEccCCc-CCCc----hhhcCC
Confidence 789999999864 3321 11 3468999999999875 333222 2334899999999875 4443 245678
Q ss_pred CCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcC
Q 006794 441 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 520 (631)
Q Consensus 441 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 520 (631)
++|++|++++|.. .+.. . ...+++|+.|+++++ .+++... +..++ +|+.|++++| .+++... +. .+
T Consensus 107 ~~L~~L~l~~n~l-~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~-~L~~L~l~~n-~l~~~~~--l~--~l 172 (308)
T 1h6u_A 107 QSIKTLDLTSTQI-TDVT--P-LAGLSNLQVLYLDLN-QITNISP---LAGLT-NLQYLSIGNA-QVSDLTP--LA--NL 172 (308)
T ss_dssp TTCCEEECTTSCC-CCCG--G-GTTCTTCCEEECCSS-CCCCCGG---GGGCT-TCCEEECCSS-CCCCCGG--GT--TC
T ss_pred CCCCEEECCCCCC-CCch--h-hcCCCCCCEEECCCC-ccCcCcc---ccCCC-CccEEEccCC-cCCCChh--hc--CC
Confidence 8999999998863 3221 1 345688999999884 4443221 23333 8889999885 5554322 22 57
Q ss_pred cccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCc
Q 006794 521 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSN 588 (631)
Q Consensus 521 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~ 588 (631)
++|+.|++++ +.+++... ...+++|+.|++++|.+++.. .+. .+++|+.|++++|+ ++.
T Consensus 173 ~~L~~L~l~~-n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~--~l~--~l~~L~~L~l~~N~-i~~ 231 (308)
T 1h6u_A 173 SKLTTLKADD-NKISDISP---LASLPNLIEVHLKNNQISDVS--PLA--NTSNLFIVTLTNQT-ITN 231 (308)
T ss_dssp TTCCEEECCS-SCCCCCGG---GGGCTTCCEEECTTSCCCBCG--GGT--TCTTCCEEEEEEEE-EEC
T ss_pred CCCCEEECCC-CccCcChh---hcCCCCCCEEEccCCccCccc--ccc--CCCCCCEEEccCCe-eec
Confidence 8888898888 46665432 345888999999888887644 243 77888888888865 543
No 81
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.15 E-value=9.5e-12 Score=119.30 Aligned_cols=209 Identities=15% Similarity=0.111 Sum_probs=136.0
Q ss_pred CCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhccc
Q 006794 334 LQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSA 413 (631)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 413 (631)
.++|++|+++++. +...... ....+++|++|+++++ .++.... ..+..+++|++|+++++..+...... ....+
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~~-~~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~--~~~~l 104 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPAA-SFRACRNLTILWLHSN-VLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPA--TFHGL 104 (285)
T ss_dssp CTTCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTT--TTTTC
T ss_pred CCCceEEEeeCCc-CCccCHH-HcccCCCCCEEECCCC-ccceeCH-hhcCCccCCCEEeCCCCCCccccCHH--HhcCC
Confidence 4789999999875 5443322 2355799999999986 3433211 12346799999999987534332111 01224
Q ss_pred CCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcc
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 493 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 493 (631)
++|++|++++|.... . ....+..+++|++|++++|.. ...... ....+++|+.|++++ +.++..... .+..++
T Consensus 105 ~~L~~L~l~~n~l~~-~--~~~~~~~l~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~l~~-n~l~~~~~~-~~~~l~ 177 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQE-L--GPGLFRGLAALQYLYLQDNAL-QALPDD-TFRDLGNLTHLFLHG-NRISSVPER-AFRGLH 177 (285)
T ss_dssp TTCCEEECTTSCCCC-C--CTTTTTTCTTCCEEECCSSCC-CCCCTT-TTTTCTTCCEEECCS-SCCCEECTT-TTTTCT
T ss_pred cCCCEEECCCCcCCE-E--CHhHhhCCcCCCEEECCCCcc-cccCHh-HhccCCCccEEECCC-CcccccCHH-HhcCcc
Confidence 899999999975332 2 123356789999999999853 221111 123468999999998 455432211 122333
Q ss_pred cCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh
Q 006794 494 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 561 (631)
Q Consensus 494 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~ 561 (631)
+|++|+++++ .++......+. .+++|+.|++++ +.+++.....+ ..+++|+.|++++|.+..
T Consensus 178 -~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~-n~l~~~~~~~~-~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 178 -SLDRLLLHQN-RVAHVHPHAFR--DLGRLMTLYLFA-NNLSALPTEAL-APLRALQYLRLNDNPWVC 239 (285)
T ss_dssp -TCCEEECCSS-CCCEECTTTTT--TCTTCCEEECCS-SCCSCCCHHHH-TTCTTCCEEECCSSCEEC
T ss_pred -ccCEEECCCC-cccccCHhHcc--CcccccEeeCCC-CcCCcCCHHHc-ccCcccCEEeccCCCccC
Confidence 8999999985 55544333333 478999999999 57876554444 459999999999998763
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.15 E-value=1.1e-10 Score=112.85 Aligned_cols=194 Identities=20% Similarity=0.193 Sum_probs=136.1
Q ss_pred cCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcc
Q 006794 333 GLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNS 412 (631)
Q Consensus 333 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 412 (631)
.+++|++|+++++. +.... . ...+++|+.|+++++. +.+... ...+++|+.|+++++. ++... . ...
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~--~-~~~l~~L~~L~L~~n~-i~~~~~---~~~l~~L~~L~L~~n~-l~~~~---~-~~~ 105 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIE--G-VQYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSGNP-LKNVS---A-IAG 105 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCT--T-GGGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCSCC-CSCCG---G-GTT
T ss_pred HcCCcCEEEeeCCC-ccCch--h-hhccCCCCEEEccCCc-CCCChh---HccCCCCCEEEccCCc-CCCch---h-hcC
Confidence 46789999999875 44322 2 3557999999999974 433221 4578999999999876 33322 1 223
Q ss_pred cCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhc
Q 006794 413 ASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESC 492 (631)
Q Consensus 413 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 492 (631)
+++|+.|++++|. +.++ ..+..+++|++|++++|..-. ... ...+++|+.|+++++ .+++.. . +..+
T Consensus 106 l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~l~~-~~~---l~~l~~L~~L~l~~n-~l~~~~--~-l~~l 172 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ-ITDV----TPLAGLSNLQVLYLDLNQITN-ISP---LAGLTNLQYLSIGNA-QVSDLT--P-LANL 172 (308)
T ss_dssp CTTCCEEECTTSC-CCCC----GGGTTCTTCCEEECCSSCCCC-CGG---GGGCTTCCEEECCSS-CCCCCG--G-GTTC
T ss_pred CCCCCEEECCCCC-CCCc----hhhcCCCCCCEEECCCCccCc-Ccc---ccCCCCccEEEccCC-cCCCCh--h-hcCC
Confidence 4899999999975 3333 236789999999999986332 211 446799999999984 555422 2 3344
Q ss_pred ccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChh
Q 006794 493 KAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDM 562 (631)
Q Consensus 493 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~ 562 (631)
+ +|+.|+++++ .+++... +. .+++|++|++++ +.+++.. . ...+++|+.|++++|.++..
T Consensus 173 ~-~L~~L~l~~n-~l~~~~~--l~--~l~~L~~L~L~~-N~l~~~~--~-l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 173 S-KLTTLKADDN-KISDISP--LA--SLPNLIEVHLKN-NQISDVS--P-LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp T-TCCEEECCSS-CCCCCGG--GG--GCTTCCEEECTT-SCCCBCG--G-GTTCTTCCEEEEEEEEEECC
T ss_pred C-CCCEEECCCC-ccCcChh--hc--CCCCCCEEEccC-CccCccc--c-ccCCCCCCEEEccCCeeecC
Confidence 4 8999999985 5554332 22 589999999999 4777654 2 35699999999999987763
No 83
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.14 E-value=2.2e-12 Score=125.99 Aligned_cols=223 Identities=18% Similarity=0.201 Sum_probs=141.4
Q ss_pred CCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCC
Q 006794 360 CLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSP 439 (631)
Q Consensus 360 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 439 (631)
.++++.|++.++. +.. +......+++|++|+++++. ++... .. ...+++|+.|++++|.. ..+ +..+..
T Consensus 80 ~~~l~~L~L~~n~-l~~--lp~~l~~l~~L~~L~L~~n~-l~~lp--~~-~~~l~~L~~L~Ls~n~l-~~l---p~~l~~ 148 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQ--FPDQAFRLSHLQHMTIDAAG-LMELP--DT-MQQFAGLETLTLARNPL-RAL---PASIAS 148 (328)
T ss_dssp STTCCEEEEESSC-CSS--CCSCGGGGTTCSEEEEESSC-CCCCC--SC-GGGGTTCSEEEEESCCC-CCC---CGGGGG
T ss_pred ccceeEEEccCCC-chh--cChhhhhCCCCCEEECCCCC-ccchh--HH-HhccCCCCEEECCCCcc-ccC---cHHHhc
Confidence 4778888888753 321 11112357999999999865 32211 11 12348999999999753 333 334677
Q ss_pred CCCCceEeccCCCCCCHHHHHHH--------hhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHH
Q 006794 440 NCSLRSLSIRNCPGFGNASLAML--------GKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEV 511 (631)
Q Consensus 440 ~~~L~~L~l~~~~~~~~~~l~~l--------~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~ 511 (631)
+++|++|++++|....... ..+ ...+++|+.|+++++ .++ .+...+..++ +|++|+++++ .++...
T Consensus 149 l~~L~~L~L~~n~~~~~~p-~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~--~lp~~l~~l~-~L~~L~L~~N-~l~~l~ 222 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELP-EPLASTDASGEHQGLVNLQSLRLEWT-GIR--SLPASIANLQ-NLKSLKIRNS-PLSALG 222 (328)
T ss_dssp CTTCCEEEEEEETTCCCCC-SCSEEEC-CCCEEESTTCCEEEEEEE-CCC--CCCGGGGGCT-TCCEEEEESS-CCCCCC
T ss_pred CcCCCEEECCCCCCccccC-hhHhhccchhhhccCCCCCEEECcCC-CcC--cchHhhcCCC-CCCEEEccCC-CCCcCc
Confidence 8999999999876443211 111 123689999999984 444 2222234444 8999999985 444321
Q ss_pred HHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchH
Q 006794 512 VLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSM 591 (631)
Q Consensus 512 ~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~ 591 (631)
. .+. .+++|++|++++|+..+. .... ...+++|+.|+|++|++.......+. .+++|++|++++|+.++ . +
T Consensus 223 ~-~l~--~l~~L~~L~Ls~n~~~~~-~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~-~-i 293 (328)
T 4fcg_A 223 P-AIH--HLPKLEELDLRGCTALRN-YPPI-FGGRAPLKRLILKDCSNLLTLPLDIH--RLTQLEKLDLRGCVNLS-R-L 293 (328)
T ss_dssp G-GGG--GCTTCCEEECTTCTTCCB-CCCC-TTCCCCCCEEECTTCTTCCBCCTTGG--GCTTCCEEECTTCTTCC-C-C
T ss_pred h-hhc--cCCCCCEEECcCCcchhh-hHHH-hcCCCCCCEEECCCCCchhhcchhhh--cCCCCCEEeCCCCCchh-h-c
Confidence 1 222 588999999999644432 1122 24589999999999986654444444 78899999999987553 2 3
Q ss_pred HHHHHhcCccccccccc
Q 006794 592 PALKKLGKTLVGLNLQN 608 (631)
Q Consensus 592 ~~l~~~~~~L~~L~l~~ 608 (631)
+......++|+.+++..
T Consensus 294 P~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPP 310 (328)
T ss_dssp CGGGGGSCTTCEEECCG
T ss_pred cHHHhhccCceEEeCCH
Confidence 33334456688887765
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.13 E-value=1.1e-10 Score=113.42 Aligned_cols=258 Identities=20% Similarity=0.175 Sum_probs=139.3
Q ss_pred cCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCC----CCHHHHHH--HHHhcCCCCeEeccCCCCCchhhHH
Q 006794 333 GLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCF----VSDNGLVA--FSKAAGSLEILQLEECNRVSQSGIL 406 (631)
Q Consensus 333 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~----~~~~~l~~--l~~~~~~L~~L~l~~~~~~~~~~~~ 406 (631)
..++|+.|++.++. +. . ...+. ..|+.|+++++.. +....... -...+++|++|+++++. ++.....
T Consensus 41 ~~~~L~~l~l~~n~-l~-~-p~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 113 (312)
T 1wwl_A 41 GGRSLEYLLKRVDT-EA-D-LGQFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAPP 113 (312)
T ss_dssp EEEECTTHHHHCCT-TC-C-CHHHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCCC
T ss_pred cCCCceeEeecccc-cc-c-HHHHH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhHH
Confidence 45678888887765 31 1 11222 1266666655421 22211111 11247889999888765 2221111
Q ss_pred HHHhcccCCCcEEecccccCCCccccccccC--CCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchh
Q 006794 407 GVVSNSASKLKSLTLVKCMGIKDMATEMPML--SPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVG 484 (631)
Q Consensus 407 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~ 484 (631)
.++...+++|++|+++++.. ...+.....+ ...++|++|++++|.. .......+ ..+++|++|+++++.-.+..+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQV-RVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTC-CCCSSCCEEECCSCTTCHHHH
T ss_pred HHHHhcCCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHh-ccCCCCCEEECCCCCcCcchH
Confidence 11113348888888888643 2221111111 1137888888888752 22211122 245888888888743222222
Q ss_pred hHHHH--hhcccCccEEecCCCCCCchH--HHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccC
Q 006794 485 IFPLL--ESCKAGLVKVNLSGCLNLTDE--VVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAIT 560 (631)
Q Consensus 485 ~~~l~--~~~~~~L~~L~l~~c~~l~~~--~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~ 560 (631)
+.... ...+ +|++|+++++ .++.. ....+.. .+++|++|++++ +.+++.........+++|+.|++++|.++
T Consensus 191 ~~~~~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~~~~-~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 191 LISALCPLKFP-TLQVLALRNA-GMETPSGVCSALAA-ARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHHSCTTSCT-TCCEEECTTS-CCCCHHHHHHHHHH-TTCCCSEEECTT-SCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred HHHHHHhccCC-CCCEEECCCC-cCcchHHHHHHHHh-cCCCCCEEECCC-CcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 22111 2333 8888888885 55532 1222333 468888888888 46665331112234678888888888877
Q ss_pred hhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCH
Q 006794 561 DMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINS 614 (631)
Q Consensus 561 ~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~ 614 (631)
.. ..-. .++|++|++++|. ++.. +. ....++|++|++++ +.+++
T Consensus 267 ~i--p~~~---~~~L~~L~Ls~N~-l~~~--p~-~~~l~~L~~L~L~~-N~l~~ 310 (312)
T 1wwl_A 267 QV--PKGL---PAKLSVLDLSYNR-LDRN--PS-PDELPQVGNLSLKG-NPFLD 310 (312)
T ss_dssp SC--CSSC---CSEEEEEECCSSC-CCSC--CC-TTTSCEEEEEECTT-CTTTC
T ss_pred hh--hhhc---cCCceEEECCCCC-CCCC--hh-HhhCCCCCEEeccC-CCCCC
Confidence 31 1111 1588888888854 6554 22 34556788888888 55654
No 85
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.12 E-value=9.7e-13 Score=127.81 Aligned_cols=231 Identities=13% Similarity=0.034 Sum_probs=147.1
Q ss_pred CCcCeEEcCCCCCCCH-HHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCC
Q 006794 361 LNLKQMCLRKCCFVSD-NGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSP 439 (631)
Q Consensus 361 ~~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 439 (631)
.+++.|+++++. +.. ..+...+..+++|++|+++++..+...... . ...+++|++|+++++...... +..+..
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~-l~~l~~L~~L~Ls~n~l~~~~---p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-A-IAKLTQLHYLYITHTNVSGAI---PDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-G-GGGCTTCSEEEEEEECCEEEC---CGGGGG
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-h-HhcCCCCCEEECcCCeeCCcC---CHHHhC
Confidence 579999999863 332 011223457899999999953333321110 1 123499999999997543232 234567
Q ss_pred CCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhc
Q 006794 440 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLH 519 (631)
Q Consensus 440 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 519 (631)
+++|++|++++|.. ...... ....+++|++|++++ +.++......+ ...++.|+.|+++++ .++......+..
T Consensus 124 l~~L~~L~Ls~N~l-~~~~p~-~~~~l~~L~~L~L~~-N~l~~~~p~~l-~~l~~~L~~L~L~~N-~l~~~~~~~~~~-- 196 (313)
T 1ogq_A 124 IKTLVTLDFSYNAL-SGTLPP-SISSLPNLVGITFDG-NRISGAIPDSY-GSFSKLFTSMTISRN-RLTGKIPPTFAN-- 196 (313)
T ss_dssp CTTCCEEECCSSEE-ESCCCG-GGGGCTTCCEEECCS-SCCEEECCGGG-GCCCTTCCEEECCSS-EEEEECCGGGGG--
T ss_pred CCCCCEEeCCCCcc-CCcCCh-HHhcCCCCCeEECcC-CcccCcCCHHH-hhhhhcCcEEECcCC-eeeccCChHHhC--
Confidence 99999999999852 211111 223569999999998 45543222222 222237999999985 444332233332
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcC
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGK 599 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 599 (631)
++ |+.|++++ +.++...... ...+++|+.|++++|.++..... +. .+++|++|++++|. ++...... ...++
T Consensus 197 l~-L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~-~~--~l~~L~~L~Ls~N~-l~~~~p~~-l~~l~ 268 (313)
T 1ogq_A 197 LN-LAFVDLSR-NMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGK-VG--LSKNLNGLDLRNNR-IYGTLPQG-LTQLK 268 (313)
T ss_dssp CC-CSEEECCS-SEEEECCGGG-CCTTSCCSEEECCSSEECCBGGG-CC--CCTTCCEEECCSSC-CEECCCGG-GGGCT
T ss_pred Cc-ccEEECcC-CcccCcCCHH-HhcCCCCCEEECCCCceeeecCc-cc--ccCCCCEEECcCCc-ccCcCChH-HhcCc
Confidence 44 99999999 4665433222 24589999999999998753322 33 67899999999965 66443333 34567
Q ss_pred cccccccccccCCC
Q 006794 600 TLVGLNLQNCNSIN 613 (631)
Q Consensus 600 ~L~~L~l~~c~~l~ 613 (631)
+|++|++++| +++
T Consensus 269 ~L~~L~Ls~N-~l~ 281 (313)
T 1ogq_A 269 FLHSLNVSFN-NLC 281 (313)
T ss_dssp TCCEEECCSS-EEE
T ss_pred CCCEEECcCC-ccc
Confidence 8999999995 444
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.08 E-value=1.7e-10 Score=111.88 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=22.7
Q ss_pred CCCcEEeecCCCCCChhHHHHHhh--cCCCCcEEEccCCC
Q 006794 229 PNLTSLNIESCSKIGNDGLQAIGK--FCRNLQCLSIKDCP 266 (631)
Q Consensus 229 ~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~ 266 (631)
..++.+.+.++ .+++..+..+.. .+++|++|+++++.
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 102 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLK 102 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCC
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCE
Confidence 45788888764 455544443322 14678888888765
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.06 E-value=5.6e-11 Score=112.83 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=34.2
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
+++|+.|++++| .++...... ...+++|+.|++++|.+++.....+. .+++|+.|++++|+
T Consensus 156 l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 156 LTNLTELDLSYN-QLQSLPEGV-FDKLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDNP 216 (272)
T ss_dssp CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred CccCCEEECCCC-CcCccCHHH-hcCCccCCEEECCCCcCCccCHHHHh--CCcCCCEEEccCCC
Confidence 566666666663 454322211 23466777777777766653332233 56677777777755
No 88
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.04 E-value=1.1e-10 Score=78.57 Aligned_cols=40 Identities=35% Similarity=0.390 Sum_probs=34.7
Q ss_pred CCCCcCCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHHh
Q 006794 45 NQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLT 85 (631)
Q Consensus 45 ~~~~i~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~ 85 (631)
....|..||+||+.+||+||+ .+|+.++++|||+|++++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhC
Confidence 456799999999999999999 9999999999999999874
No 89
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=4e-10 Score=110.38 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=97.1
Q ss_pred HHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCC--CChH-
Q 006794 461 MLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRK--ITDA- 537 (631)
Q Consensus 461 ~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~--l~~~- 537 (631)
.+...+|+|+.|.|.++..+.-..+ . . ++|++|+|..| .+++..+..+....+|+|++|+|+.+.+ ..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~~----~-~-~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGKK----P-R-PNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCSC----B-C-TTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred HHHhcCCCCcEEEEeCCCCceeccc----c-C-CCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchh
Confidence 4444567777777766422221111 1 2 27888888764 5777777766643478888887753111 1111
Q ss_pred --HHHHHH--hcCCcCCEEEecCCccChhhHHhhhh-ccCCCccEEeccCCCCCCcchHHHHH---HhcCcccccccccc
Q 006794 538 --SLVAIG--NNCMFLSYLDVSKCAITDMGISALSH-AEQLNLQVLSLSSCSEVSNKSMPALK---KLGKTLVGLNLQNC 609 (631)
Q Consensus 538 --~~~~l~--~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~l~~c 609 (631)
.+..+. ..+|+|+.|+|.+|.+++.+...+.. ..+++|++|+|+.| .+++.+...+. ..+++|+.|++++|
T Consensus 239 ~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 111111 24788888888888887766555542 14678888888774 47776655543 23567888888875
Q ss_pred cCCCHHHHHHHHhhc-cccc
Q 006794 610 NSINSSTVARLVESL-WRCD 628 (631)
Q Consensus 610 ~~l~~~~~~~l~~~l-~~~~ 628 (631)
.+++.+++.+.+.+ ..|+
T Consensus 318 -~i~d~~~~~l~~alg~~~~ 336 (362)
T 2ra8_A 318 -YLSDEMKKELQKSLPMKID 336 (362)
T ss_dssp -BCCHHHHHHHHHHCCSEEE
T ss_pred -cCCHHHHHHHHHHcCCEEE
Confidence 58888888888755 4444
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.01 E-value=4.7e-11 Score=114.28 Aligned_cols=201 Identities=17% Similarity=0.129 Sum_probs=113.7
Q ss_pred cCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCC
Q 006794 359 GCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLS 438 (631)
Q Consensus 359 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 438 (631)
.+++++++++.++ .++.. .. .-.++++.|+++++. ++..... ....+++|+.|+++++. +..+.. ..
T Consensus 8 ~l~~l~~l~~~~~-~l~~i--p~--~~~~~l~~L~L~~N~-l~~~~~~--~~~~l~~L~~L~L~~n~-l~~~~~----~~ 74 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTAL--PP--DLPKDTTILHLSENL-LYTFSLA--TLMPYTRLTQLNLDRAE-LTKLQV----DG 74 (290)
T ss_dssp CSTTCCEEECTTS-CCSSC--CS--CCCTTCCEEECTTSC-CSEEEGG--GGTTCTTCCEEECTTSC-CCEEEC----CS
T ss_pred ccCCccEEECCCC-CCCcC--CC--CCCCCCCEEEcCCCc-CCccCHH--HhhcCCCCCEEECCCCc-cCcccC----CC
Confidence 3578888888874 33221 00 013678899998865 3322111 11223888999998854 443322 25
Q ss_pred CCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhh
Q 006794 439 PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARL 518 (631)
Q Consensus 439 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 518 (631)
.+++|++|+++++.. .. +......+++|+.|++++ +.++.... ..+...+ +|++|+++++ .++......+.
T Consensus 75 ~l~~L~~L~Ls~N~l-~~--l~~~~~~l~~L~~L~l~~-N~l~~l~~-~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~-- 145 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQL-QS--LPLLGQTLPALTVLDVSF-NRLTSLPL-GALRGLG-ELQELYLKGN-ELKTLPPGLLT-- 145 (290)
T ss_dssp CCTTCCEEECCSSCC-SS--CCCCTTTCTTCCEEECCS-SCCCCCCS-STTTTCT-TCCEEECTTS-CCCCCCTTTTT--
T ss_pred CCCcCCEEECCCCcC-Cc--CchhhccCCCCCEEECCC-CcCcccCH-HHHcCCC-CCCEEECCCC-CCCccChhhcc--
Confidence 688888888888753 21 111223467888888887 34432111 1112222 7888888774 44433222122
Q ss_pred cCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCC
Q 006794 519 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEV 586 (631)
Q Consensus 519 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l 586 (631)
.+++|+.|++++ ++++.... .....+++|+.|+|++|.++... ..+. ..++|+.|++++++-.
T Consensus 146 ~l~~L~~L~L~~-N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip-~~~~--~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 146 PTPKLEKLSLAN-NNLTELPA-GLLNGLENLDTLLLQENSLYTIP-KGFF--GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCTTCCEEECTT-SCCSCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTT--TTCCCSEEECCSCCBC
T ss_pred cccCCCEEECCC-CcCCccCH-HHhcCcCCCCEEECCCCcCCccC-hhhc--ccccCCeEEeCCCCcc
Confidence 367788888877 46654322 12234778888888888766422 1222 4557888888876643
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.00 E-value=3.1e-10 Score=101.90 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=30.9
Q ss_pred CCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEeccc
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSG 476 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 476 (631)
++|+.|+++++. +.+++ .+..+++|++|++++|. +.... . ...+++|++|++++
T Consensus 44 ~~L~~L~l~~n~-i~~l~----~l~~l~~L~~L~l~~n~-~~~~~--~-l~~l~~L~~L~l~~ 97 (197)
T 4ezg_A 44 NSLTYITLANIN-VTDLT----GIEYAHNIKDLTINNIH-ATNYN--P-ISGLSNLERLRIMG 97 (197)
T ss_dssp HTCCEEEEESSC-CSCCT----TGGGCTTCSEEEEESCC-CSCCG--G-GTTCTTCCEEEEEC
T ss_pred CCccEEeccCCC-ccChH----HHhcCCCCCEEEccCCC-CCcch--h-hhcCCCCCEEEeEC
Confidence 788888888753 33332 24456777777777763 32211 1 22346666666665
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.95 E-value=1.5e-10 Score=109.82 Aligned_cols=107 Identities=15% Similarity=0.062 Sum_probs=71.7
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 574 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~ 574 (631)
+|++|+++++ .++......+. .+++|++|++++| .++...... ...+++|+.|++++|.+++.....+. .+++
T Consensus 110 ~L~~L~L~~n-~l~~~~~~~~~--~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~ 182 (272)
T 3rfs_A 110 NLKELVLVEN-QLQSLPDGVFD--KLTNLTYLNLAHN-QLQSLPKGV-FDKLTNLTELDLSYNQLQSLPEGVFD--KLTQ 182 (272)
T ss_dssp TCCEEECTTS-CCCCCCTTTTT--TCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTT--TCTT
T ss_pred CCCEEECCCC-cCCccCHHHhc--cCCCCCEEECCCC-ccCccCHHH-hccCccCCEEECCCCCcCccCHHHhc--CCcc
Confidence 6677777664 34322221122 4788999999884 666433222 24589999999999998865443344 7889
Q ss_pred ccEEeccCCCCCCcchHHHHHHhcCccccccccccc
Q 006794 575 LQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCN 610 (631)
Q Consensus 575 L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~ 610 (631)
|+.|++++|. ++.... .....+++|+.|++++|+
T Consensus 183 L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 183 LKDLRLYQNQ-LKSVPD-GVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCc-CCccCH-HHHhCCcCCCEEEccCCC
Confidence 9999999975 664332 223456789999999854
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.94 E-value=1.3e-09 Score=97.67 Aligned_cols=58 Identities=22% Similarity=0.186 Sum_probs=33.9
Q ss_pred hcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCC
Q 006794 385 AAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCP 452 (631)
Q Consensus 385 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 452 (631)
.+++|+.|+++++. ++.... ...+++|+.|++++| .+.+. ..+..+++|++|++++|.
T Consensus 42 ~l~~L~~L~l~~n~-i~~l~~----l~~l~~L~~L~l~~n-~~~~~----~~l~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 42 QMNSLTYITLANIN-VTDLTG----IEYAHNIKDLTINNI-HATNY----NPISGLSNLERLRIMGKD 99 (197)
T ss_dssp HHHTCCEEEEESSC-CSCCTT----GGGCTTCSEEEEESC-CCSCC----GGGTTCTTCCEEEEECTT
T ss_pred hcCCccEEeccCCC-ccChHH----HhcCCCCCEEEccCC-CCCcc----hhhhcCCCCCEEEeECCc
Confidence 35677777777654 222110 122377777877776 33333 234567777888777764
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.94 E-value=2.7e-09 Score=102.14 Aligned_cols=169 Identities=21% Similarity=0.168 Sum_probs=83.1
Q ss_pred CCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCC
Q 006794 361 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 440 (631)
Q Consensus 361 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 440 (631)
++|+.|++.++. +... .. ...+++|+.|++++|. ++.... ...+++|+.|++++|. +.++ ..+..+
T Consensus 46 ~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~----l~~l~~L~~L~l~~n~-l~~~----~~l~~l 111 (291)
T 1h6t_A 46 NSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGNK-LTDIKP----LANLKNLGWLFLDENK-VKDL----SSLKDL 111 (291)
T ss_dssp HTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCSSC-CCCCGG----GTTCTTCCEEECCSSC-CCCG----GGGTTC
T ss_pred CcccEEEccCCC-cccC--hh-HhcCCCCCEEEccCCc-cCCCcc----cccCCCCCEEECCCCc-CCCC----hhhccC
Confidence 678888887753 3221 11 2356777777777754 222211 2223677777777653 2222 224556
Q ss_pred CCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcC
Q 006794 441 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 520 (631)
Q Consensus 441 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 520 (631)
++|++|++++|. +.+. .. ...+++|+.|+++++ .+++. ..+..++ +|+.|+++++ .+++... +. .+
T Consensus 112 ~~L~~L~L~~n~-i~~~--~~-l~~l~~L~~L~l~~n-~l~~~---~~l~~l~-~L~~L~L~~N-~l~~~~~--l~--~l 177 (291)
T 1h6t_A 112 KKLKSLSLEHNG-ISDI--NG-LVHLPQLESLYLGNN-KITDI---TVLSRLT-KLDTLSLEDN-QISDIVP--LA--GL 177 (291)
T ss_dssp TTCCEEECTTSC-CCCC--GG-GGGCTTCCEEECCSS-CCCCC---GGGGGCT-TCSEEECCSS-CCCCCGG--GT--TC
T ss_pred CCCCEEECCCCc-CCCC--hh-hcCCCCCCEEEccCC-cCCcc---hhhccCC-CCCEEEccCC-ccccchh--hc--CC
Confidence 667777776664 2221 11 223466666666652 33321 1122222 5666666553 3332211 11 35
Q ss_pred cccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh
Q 006794 521 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 561 (631)
Q Consensus 521 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~ 561 (631)
++|+.|++++ +.+++.. . ...+++|+.|++++|.+++
T Consensus 178 ~~L~~L~L~~-N~i~~l~--~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 178 TKLQNLYLSK-NHISDLR--A-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCCEEECCS-SCCCBCG--G-GTTCTTCSEEEEEEEEEEC
T ss_pred CccCEEECCC-CcCCCCh--h-hccCCCCCEEECcCCcccC
Confidence 5556666655 3444421 1 2235555666665555444
No 95
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=1.6e-08 Score=99.05 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=95.9
Q ss_pred cCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhh-cCCCCcEEecccccC--CCchhh---H
Q 006794 413 ASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGK-LCPQLQHVDLSGLYG--ITDVGI---F 486 (631)
Q Consensus 413 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~~--l~~~~~---~ 486 (631)
+|+|+.|.+.++..+. . ..+ ..++|++|++..|. +++..+..++. .+|+|++|+|+.+.. ..+.++ .
T Consensus 171 ~P~L~~L~L~g~~~l~---l--~~~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLS---I--GKK-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp CTTCCEEEEECCBTCB---C--CSC-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred CCCCcEEEEeCCCCce---e--ccc-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3778888877653221 1 112 37899999998765 77777777764 589999999864211 122222 2
Q ss_pred HHHh--hcccCccEEecCCCCCCchHHHHHHHhh-cCcccCeecccCCCCCChHHHHHHHh---cCCcCCEEEecCCccC
Q 006794 487 PLLE--SCKAGLVKVNLSGCLNLTDEVVLALARL-HSETLELLNLDGCRKITDASLVAIGN---NCMFLSYLDVSKCAIT 560 (631)
Q Consensus 487 ~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~~-~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~L~~~~l~ 560 (631)
.++. .+ ++|++|.+.+| .+.+.....++.. .+++|++|+|+. +.+++.+...+.. .+++|+.|+|++|.++
T Consensus 244 ~~l~~~~~-p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 244 PLFSKDRF-PNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGSCTTTC-TTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHhcCCC-CCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2222 13 37888888775 5555444444421 256777777765 5777777666653 3677777777777777
Q ss_pred hhhHHhhhhccCCCccEEeccC
Q 006794 561 DMGISALSHAEQLNLQVLSLSS 582 (631)
Q Consensus 561 ~~~~~~l~~~~~~~L~~L~l~~ 582 (631)
+.++..+. ..+ ...+++++
T Consensus 321 d~~~~~l~-~al--g~~~~~~~ 339 (362)
T 2ra8_A 321 DEMKKELQ-KSL--PMKIDVSD 339 (362)
T ss_dssp HHHHHHHH-HHC--CSEEECCS
T ss_pred HHHHHHHH-HHc--CCEEEecC
Confidence 77777666 111 24456655
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.93 E-value=3.7e-09 Score=101.17 Aligned_cols=168 Identities=24% Similarity=0.221 Sum_probs=109.7
Q ss_pred hcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhh
Q 006794 385 AAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGK 464 (631)
Q Consensus 385 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 464 (631)
.+++|+.|++++|.-....++ ..+++|+.|++++|. +.++. .+..+++|++|++++|. ++.. .. ..
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~-----~~l~~L~~L~L~~n~-l~~~~----~l~~l~~L~~L~l~~n~-l~~~--~~-l~ 109 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGI-----QYLPNVTKLFLNGNK-LTDIK----PLANLKNLGWLFLDENK-VKDL--SS-LK 109 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTG-----GGCTTCCEEECCSSC-CCCCG----GGTTCTTCCEEECCSSC-CCCG--GG-GT
T ss_pred hcCcccEEEccCCCcccChhH-----hcCCCCCEEEccCCc-cCCCc----ccccCCCCCEEECCCCc-CCCC--hh-hc
Confidence 468899999988753222222 224899999998864 33332 15678899999999886 3321 12 34
Q ss_pred cCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHh
Q 006794 465 LCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGN 544 (631)
Q Consensus 465 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 544 (631)
.+++|+.|+++++ .+++- . .+..++ +|+.|+++++ .+++. ..+. .+++|+.|++++ +.+++... ..
T Consensus 110 ~l~~L~~L~L~~n-~i~~~--~-~l~~l~-~L~~L~l~~n-~l~~~--~~l~--~l~~L~~L~L~~-N~l~~~~~---l~ 175 (291)
T 1h6t_A 110 DLKKLKSLSLEHN-GISDI--N-GLVHLP-QLESLYLGNN-KITDI--TVLS--RLTKLDTLSLED-NQISDIVP---LA 175 (291)
T ss_dssp TCTTCCEEECTTS-CCCCC--G-GGGGCT-TCCEEECCSS-CCCCC--GGGG--GCTTCSEEECCS-SCCCCCGG---GT
T ss_pred cCCCCCEEECCCC-cCCCC--h-hhcCCC-CCCEEEccCC-cCCcc--hhhc--cCCCCCEEEccC-Cccccchh---hc
Confidence 5688999999884 44432 1 122333 7888888885 45443 2222 478888888888 46665432 34
Q ss_pred cCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 545 NCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 545 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
.+++|+.|++++|.+++. ..+. .+++|+.|++++|+
T Consensus 176 ~l~~L~~L~L~~N~i~~l--~~l~--~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDL--RALA--GLKNLDVLELFSQE 211 (291)
T ss_dssp TCTTCCEEECCSSCCCBC--GGGT--TCTTCSEEEEEEEE
T ss_pred CCCccCEEECCCCcCCCC--hhhc--cCCCCCEEECcCCc
Confidence 588888888888887763 2344 67788888888864
No 97
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.92 E-value=2.1e-10 Score=109.31 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=52.6
Q ss_pred CCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchH---HHHHHHhhcCcccC-eecccCCCCCChHHHHH
Q 006794 466 CPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDE---VVLALARLHSETLE-LLNLDGCRKITDASLVA 541 (631)
Q Consensus 466 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~---~~~~l~~~~~~~L~-~L~l~~c~~l~~~~~~~ 541 (631)
+++|++|++++ +.++...+...+..++ +|++|+++++ .++.. .+..+. .++.|. .|++++ +.++......
T Consensus 123 l~~L~~L~l~~-n~l~~~~l~~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~~l~--~L~~l~l~L~ls~-n~l~~~~~~~ 196 (276)
T 2z62_A 123 LKTLKELNVAH-NLIQSFKLPEYFSNLT-NLEHLDLSSN-KIQSIYCTDLRVLH--QMPLLNLSLDLSL-NPMNFIQPGA 196 (276)
T ss_dssp CTTCCEEECCS-SCCCCCCCCGGGGGCT-TCCEEECCSS-CCCEECGGGGHHHH--TCTTCCEEEECCS-SCCCEECTTS
T ss_pred CCCCCEEECcC-CccceecCchhhccCC-CCCEEECCCC-CCCcCCHHHhhhhh--hccccceeeecCC-CcccccCccc
Confidence 35555555555 2333222222222222 5666666653 33322 122111 123333 666766 4555332211
Q ss_pred HHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 542 IGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 542 l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
+ ...+|+.|++++|.++......+. .+++|+.|++++++
T Consensus 197 ~--~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 197 F--KEIRLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTNP 235 (276)
T ss_dssp S--CSCCEEEEECCSSCCSCCCTTTTT--TCCSCCEEECCSSC
T ss_pred c--CCCcccEEECCCCceeecCHhHhc--ccccccEEEccCCc
Confidence 1 134678888888776654333333 56778888887755
No 98
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=1.6e-08 Score=89.30 Aligned_cols=125 Identities=19% Similarity=0.240 Sum_probs=67.3
Q ss_pred HHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcc--cCccEEecCCCCCCchHHHHHHHhh--cCcccCeecccCCC
Q 006794 457 ASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK--AGLVKVNLSGCLNLTDEVVLALARL--HSETLELLNLDGCR 532 (631)
Q Consensus 457 ~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~--~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~L~~L~l~~c~ 532 (631)
..+..+....++|++|+++++..++++++..+..... ++|++|+|++| .+.+.+...++.. ..++|++|+|++ +
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~-N 103 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES-N 103 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS-S
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC-C
Confidence 3445555556777777777644677766666554321 25666666663 4555555444331 234566666655 3
Q ss_pred CCChHHHHHHHh---cCCcCCEEEe--cCCccChhhHHhhhh--ccCCCccEEeccCC
Q 006794 533 KITDASLVAIGN---NCMFLSYLDV--SKCAITDMGISALSH--AEQLNLQVLSLSSC 583 (631)
Q Consensus 533 ~l~~~~~~~l~~---~~~~L~~L~L--~~~~l~~~~~~~l~~--~~~~~L~~L~l~~c 583 (631)
.+++.+...+.. ..+.|++|+| ++|.+++.+...+.. ...++|++|++++|
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 566655555542 2345666666 555565555444331 13345555555553
No 99
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.90 E-value=3.8e-10 Score=106.98 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=109.4
Q ss_pred CCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcC
Q 006794 387 GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLC 466 (631)
Q Consensus 387 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 466 (631)
++|+.|+++++. ++.... .....+++|++|+++++. +..+. ...+..+++|++|+++++. +..... .....+
T Consensus 37 ~~l~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~-l~~i~--~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPS--KAFHRLTKLRLLYLNDNK-LQTLP--AGIFKELKNLETLWVTDNK-LQALPI-GVFDQL 108 (270)
T ss_dssp TTCSEEECCSSC-CSCCCT--TSSSSCTTCCEEECCSSC-CSCCC--TTTTSSCTTCCEEECCSSC-CCCCCT-TTTTTC
T ss_pred CCCCEEECcCCC-CCeeCH--HHhcCCCCCCEEECCCCc-cCeeC--hhhhcCCCCCCEEECCCCc-CCcCCH-hHcccc
Confidence 579999998865 322211 011234889999998854 33221 2224568899999998875 322111 122346
Q ss_pred CCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcC
Q 006794 467 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 546 (631)
Q Consensus 467 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 546 (631)
++|+.|++++ +.++..... .+..++ +|++|+++++ .++......+. .+++|++|++++ +.++......+ ..+
T Consensus 109 ~~L~~L~l~~-n~l~~~~~~-~~~~l~-~L~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~L~~-n~l~~~~~~~~-~~l 180 (270)
T 2o6q_A 109 VNLAELRLDR-NQLKSLPPR-VFDSLT-KLTYLSLGYN-ELQSLPKGVFD--KLTSLKELRLYN-NQLKRVPEGAF-DKL 180 (270)
T ss_dssp SSCCEEECCS-SCCCCCCTT-TTTTCT-TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCSCCCTTTT-TTC
T ss_pred cCCCEEECCC-CccCeeCHH-HhCcCc-CCCEEECCCC-cCCccCHhHcc--CCcccceeEecC-CcCcEeChhHh-ccC
Confidence 8899999987 344322211 112233 8899999885 45433222222 478888998888 46655433222 347
Q ss_pred CcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 547 MFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 547 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
++|+.|+|++|.++......+. .+++|+.|++++++
T Consensus 181 ~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 181 TELKTLKLDNNQLKRVPEGAFD--SLEKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred CCcCEEECCCCcCCcCCHHHhc--cccCCCEEEecCCC
Confidence 8899999988887764433333 67788889988876
No 100
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.87 E-value=1.4e-09 Score=103.03 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=107.0
Q ss_pred CCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCC
Q 006794 361 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 440 (631)
Q Consensus 361 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 440 (631)
++|++|+++++. +.... ...+..+++|++|+++++. ++... ......+++|++|+++++. +..+. ...+..+
T Consensus 37 ~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~--~~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLP-SKAFHRLTKLRLLYLNDNK-LQTLP--AGIFKELKNLETLWVTDNK-LQALP--IGVFDQL 108 (270)
T ss_dssp TTCSEEECCSSC-CSCCC-TTSSSSCTTCCEEECCSSC-CSCCC--TTTTSSCTTCCEEECCSSC-CCCCC--TTTTTTC
T ss_pred CCCCEEECcCCC-CCeeC-HHHhcCCCCCCEEECCCCc-cCeeC--hhhhcCCCCCCEEECCCCc-CCcCC--HhHcccc
Confidence 578899988863 33211 1122357889999988764 22211 1111224889999998864 33221 1234568
Q ss_pred CCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcC
Q 006794 441 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 520 (631)
Q Consensus 441 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 520 (631)
++|++|+++++.. ...... ....+++|+.|+++++ .++..... .+..++ +|++|+++++ .++......+. .+
T Consensus 109 ~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~-~L~~L~L~~n-~l~~~~~~~~~--~l 180 (270)
T 2o6q_A 109 VNLAELRLDRNQL-KSLPPR-VFDSLTKLTYLSLGYN-ELQSLPKG-VFDKLT-SLKELRLYNN-QLKRVPEGAFD--KL 180 (270)
T ss_dssp SSCCEEECCSSCC-CCCCTT-TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCT-TCCEEECCSS-CCSCCCTTTTT--TC
T ss_pred cCCCEEECCCCcc-CeeCHH-HhCcCcCCCEEECCCC-cCCccCHh-HccCCc-ccceeEecCC-cCcEeChhHhc--cC
Confidence 8899999988752 221111 1234688999999884 44422111 122233 8999999885 44433222222 47
Q ss_pred cccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccC
Q 006794 521 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAIT 560 (631)
Q Consensus 521 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~ 560 (631)
++|++|++++ +.++......+ ..+++|+.|+|++|.+.
T Consensus 181 ~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 181 TELKTLKLDN-NQLKRVPEGAF-DSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCCEEECCS-SCCSCCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred CCcCEEECCC-CcCCcCCHHHh-ccccCCCEEEecCCCee
Confidence 8899999988 46664332222 34888999999888754
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.85 E-value=4.8e-09 Score=110.52 Aligned_cols=168 Identities=24% Similarity=0.209 Sum_probs=114.3
Q ss_pred hcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhh
Q 006794 385 AAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGK 464 (631)
Q Consensus 385 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 464 (631)
.+++|+.|+++++.-.....+ ..+++|+.|+|++|. +..+. .+..+++|+.|++++|.. ... .. ..
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l-----~~l~~L~~L~Ls~N~-l~~~~----~l~~l~~L~~L~Ls~N~l-~~l--~~-l~ 106 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGI-----QYLPNVTKLFLNGNK-LTDIK----PLTNLKNLGWLFLDENKI-KDL--SS-LK 106 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTG-----GGCTTCCEEECTTSC-CCCCG----GGGGCTTCCEEECCSSCC-CCC--TT-ST
T ss_pred cCCCCCEEECcCCCCCCChHH-----ccCCCCCEEEeeCCC-CCCCh----hhccCCCCCEEECcCCCC-CCC--hh-hc
Confidence 568999999998763222222 234899999999865 33332 156789999999999863 321 12 33
Q ss_pred cCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHh
Q 006794 465 LCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGN 544 (631)
Q Consensus 465 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 544 (631)
.+++|+.|+|+++ .+.+. . -+..++ +|+.|+|++| .++.. ..+. .+++|+.|+|++| .+++... ..
T Consensus 107 ~l~~L~~L~Ls~N-~l~~l--~-~l~~l~-~L~~L~Ls~N-~l~~l--~~l~--~l~~L~~L~Ls~N-~l~~~~~---l~ 172 (605)
T 1m9s_A 107 DLKKLKSLSLEHN-GISDI--N-GLVHLP-QLESLYLGNN-KITDI--TVLS--RLTKLDTLSLEDN-QISDIVP---LA 172 (605)
T ss_dssp TCTTCCEEECTTS-CCCCC--G-GGGGCT-TCSEEECCSS-CCCCC--GGGG--SCTTCSEEECCSS-CCCCCGG---GT
T ss_pred cCCCCCEEEecCC-CCCCC--c-cccCCC-ccCEEECCCC-ccCCc--hhhc--ccCCCCEEECcCC-cCCCchh---hc
Confidence 5689999999984 44431 1 133344 8999999885 55543 2222 5789999999884 6665433 44
Q ss_pred cCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 545 NCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 545 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
.+++|+.|+|++|.+++. ..+. .+++|+.|+|++|+
T Consensus 173 ~l~~L~~L~Ls~N~i~~l--~~l~--~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDL--RALA--GLKNLDVLELFSQE 208 (605)
T ss_dssp TCTTCCEEECCSSCCCBC--GGGT--TCTTCSEEECCSEE
T ss_pred cCCCCCEEECcCCCCCCC--hHHc--cCCCCCEEEccCCc
Confidence 589999999999988764 3344 78899999999875
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.85 E-value=1.3e-10 Score=107.97 Aligned_cols=204 Identities=14% Similarity=-0.020 Sum_probs=93.5
Q ss_pred CCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCC
Q 006794 361 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 440 (631)
Q Consensus 361 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 440 (631)
++|++|+++++ .++.... ..+..+++|++|+++++..++..... ....+++|++|++++|+.+..+.. ..+..+
T Consensus 31 ~~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~--~f~~l~~L~~L~l~~~n~l~~i~~--~~f~~l 104 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESH--SFYNLSKVTHIEIRNTRNLTYIDP--DALKEL 104 (239)
T ss_dssp TTCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEECTT--TEESCTTCCEEEEEEETTCCEECT--TSEECC
T ss_pred CcccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCcceeCHh--HcCCCcCCcEEECCCCCCeeEcCH--HHhCCC
Confidence 57888888875 3332111 11235677777777776423221110 011236777777776555544321 123345
Q ss_pred CCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcC
Q 006794 441 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 520 (631)
Q Consensus 441 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 520 (631)
++|++|++++|.. .. +.. ...+++|+ .|+.|+++++..++......+. .+
T Consensus 105 ~~L~~L~l~~n~l-~~--lp~-~~~l~~L~------------------------~L~~L~l~~N~~l~~i~~~~~~--~l 154 (239)
T 2xwt_C 105 PLLKFLGIFNTGL-KM--FPD-LTKVYSTD------------------------IFFILEITDNPYMTSIPVNAFQ--GL 154 (239)
T ss_dssp TTCCEEEEEEECC-CS--CCC-CTTCCBCC------------------------SEEEEEEESCTTCCEECTTTTT--TT
T ss_pred CCCCEEeCCCCCC-cc--ccc-cccccccc------------------------cccEEECCCCcchhhcCccccc--ch
Confidence 6666666666532 11 000 11233444 0114444443223221111111 24
Q ss_pred cccC-eecccCCCCCChHHHHHHHhcCCcCCEEEecCCc-cChhhHHhhhhccC-CCccEEeccCCCCCCcchHHHHHHh
Q 006794 521 ETLE-LLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCA-ITDMGISALSHAEQ-LNLQVLSLSSCSEVSNKSMPALKKL 597 (631)
Q Consensus 521 ~~L~-~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~-~~L~~L~l~~c~~l~~~~~~~l~~~ 597 (631)
++|+ .|++++ +.++...... .. .++|+.|++++|. ++......+. .+ ++|+.|+++++. ++.... ..
T Consensus 155 ~~L~~~L~l~~-n~l~~i~~~~-~~-~~~L~~L~L~~n~~l~~i~~~~~~--~l~~~L~~L~l~~N~-l~~l~~----~~ 224 (239)
T 2xwt_C 155 CNETLTLKLYN-NGFTSVQGYA-FN-GTKLDAVYLNKNKYLTVIDKDAFG--GVYSGPSLLDVSQTS-VTALPS----KG 224 (239)
T ss_dssp BSSEEEEECCS-CCCCEECTTT-TT-TCEEEEEECTTCTTCCEECTTTTT--TCSBCCSEEECTTCC-CCCCCC----TT
T ss_pred hcceeEEEcCC-CCCcccCHhh-cC-CCCCCEEEcCCCCCcccCCHHHhh--ccccCCcEEECCCCc-cccCCh----hH
Confidence 5566 666655 3444222111 12 2566666666663 5543322233 44 566777776643 432211 13
Q ss_pred cCccccccccccc
Q 006794 598 GKTLVGLNLQNCN 610 (631)
Q Consensus 598 ~~~L~~L~l~~c~ 610 (631)
+++|+.|++++++
T Consensus 225 ~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 225 LEHLKELIARNTW 237 (239)
T ss_dssp CTTCSEEECTTC-
T ss_pred hccCceeeccCcc
Confidence 4556666666654
No 103
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.85 E-value=5.9e-08 Score=85.56 Aligned_cols=128 Identities=19% Similarity=0.195 Sum_probs=88.3
Q ss_pred hHHHHhhcccCccEEecCCCCCCchHHHHHHHhh--cCcccCeecccCCCCCChHHHHHHHh---cCCcCCEEEecCCcc
Q 006794 485 IFPLLESCKAGLVKVNLSGCLNLTDEVVLALARL--HSETLELLNLDGCRKITDASLVAIGN---NCMFLSYLDVSKCAI 559 (631)
Q Consensus 485 ~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~L~~~~l 559 (631)
+...+..++ .|++|+|++|..+.+.+...++.. ..++|++|+|++ +.+++.+...+.. ..++|++|+|++|.|
T Consensus 28 l~~~l~~~~-~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 28 LKRIQNNDP-DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHTTCT-TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHhcCC-CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 444444444 788888888657887777666542 347788888888 4788877766653 357788888888888
Q ss_pred ChhhHHhhhh--ccCCCccEEec--cCCCCCCcchHHHHHH---hcCcccccccccccCCCHHH
Q 006794 560 TDMGISALSH--AEQLNLQVLSL--SSCSEVSNKSMPALKK---LGKTLVGLNLQNCNSINSST 616 (631)
Q Consensus 560 ~~~~~~~l~~--~~~~~L~~L~l--~~c~~l~~~~~~~l~~---~~~~L~~L~l~~c~~l~~~~ 616 (631)
++.++..+.. ...+.|++|++ ++| .+++.+...+.. ..++|++|++++ +.++..+
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~-n~i~~~~ 167 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHF-TQQGPRL 167 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCC-SSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccC-CCCChHH
Confidence 8887666652 25667888888 554 477776554443 346788888888 4577665
No 104
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.84 E-value=3.8e-10 Score=107.46 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=92.5
Q ss_pred CCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHh
Q 006794 438 SPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALAR 517 (631)
Q Consensus 438 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 517 (631)
..+++|++|++++|. +....... ...+++|+.|+++++ .++...... +..++ +|++|+++++ .++...+.....
T Consensus 73 ~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~-~L~~L~l~~n-~l~~~~l~~~~~ 146 (276)
T 2z62_A 73 QSLSHLSTLILTGNP-IQSLALGA-FSGLSSLQKLVAVET-NLASLENFP-IGHLK-TLKELNVAHN-LIQSFKLPEYFS 146 (276)
T ss_dssp TTCTTCCEEECTTCC-CCEECTTT-TTTCTTCCEEECTTS-CCCCSTTCC-CTTCT-TCCEEECCSS-CCCCCCCCGGGG
T ss_pred cCCcCCCEEECCCCc-cCccChhh-hcCCccccEEECCCC-CccccCchh-cccCC-CCCEEECcCC-ccceecCchhhc
Confidence 445666666666654 22111111 123477777777763 332211111 22233 8999999985 454422111122
Q ss_pred hcCcccCeecccCCCCCChHH---HHHHHhcCCcCC-EEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHH
Q 006794 518 LHSETLELLNLDGCRKITDAS---LVAIGNNCMFLS-YLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPA 593 (631)
Q Consensus 518 ~~~~~L~~L~l~~c~~l~~~~---~~~l~~~~~~L~-~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~ 593 (631)
.+++|++|++++ +.++... +..+. .++.|. .|++++|.++......+ ...+|+.|++++|. ++.... .
T Consensus 147 -~l~~L~~L~Ls~-N~l~~~~~~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~~~---~~~~L~~L~L~~n~-l~~~~~-~ 218 (276)
T 2z62_A 147 -NLTNLEHLDLSS-NKIQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAF---KEIRLKELALDTNQ-LKSVPD-G 218 (276)
T ss_dssp -GCTTCCEEECCS-SCCCEECGGGGHHHH-TCTTCCEEEECCSSCCCEECTTSS---CSCCEEEEECCSSC-CSCCCT-T
T ss_pred -cCCCCCEEECCC-CCCCcCCHHHhhhhh-hccccceeeecCCCcccccCcccc---CCCcccEEECCCCc-eeecCH-h
Confidence 589999999999 4776532 22222 244444 89999999886443333 34589999999975 764432 2
Q ss_pred HHHhcCcccccccccc
Q 006794 594 LKKLGKTLVGLNLQNC 609 (631)
Q Consensus 594 l~~~~~~L~~L~l~~c 609 (631)
+...+++|+.|+++++
T Consensus 219 ~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 219 IFDRLTSLQKIWLHTN 234 (276)
T ss_dssp TTTTCCSCCEEECCSS
T ss_pred HhcccccccEEEccCC
Confidence 2345678999999973
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.84 E-value=6.4e-09 Score=109.56 Aligned_cols=175 Identities=21% Similarity=0.137 Sum_probs=122.9
Q ss_pred CCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCC
Q 006794 360 CLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSP 439 (631)
Q Consensus 360 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 439 (631)
+++|+.|.+.++. +... .. +..+++|+.|+|++|. +..... ...+++|+.|+|++|. +..+ +.+..
T Consensus 42 L~~L~~L~l~~n~-i~~l--~~-l~~l~~L~~L~Ls~N~-l~~~~~----l~~l~~L~~L~Ls~N~-l~~l----~~l~~ 107 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGNK-LTDIKP----LTNLKNLGWLFLDENK-IKDL----SSLKD 107 (605)
T ss_dssp HTTCCCCBCTTCC-CCCC--TT-GGGCTTCCEEECTTSC-CCCCGG----GGGCTTCCEEECCSSC-CCCC----TTSTT
T ss_pred CCCCCEEECcCCC-CCCC--hH-HccCCCCCEEEeeCCC-CCCChh----hccCCCCCEEECcCCC-CCCC----hhhcc
Confidence 3889999999864 3321 12 3568999999999876 332221 2334999999999974 3333 35678
Q ss_pred CCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhc
Q 006794 440 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLH 519 (631)
Q Consensus 440 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 519 (631)
+++|++|++++|..-. . .. ...+++|+.|+|+++ .+++. ..+..++ +|+.|+|++| .+++... +. .
T Consensus 108 l~~L~~L~Ls~N~l~~-l--~~-l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~-~L~~L~Ls~N-~l~~~~~--l~--~ 173 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISD-I--NG-LVHLPQLESLYLGNN-KITDI---TVLSRLT-KLDTLSLEDN-QISDIVP--LA--G 173 (605)
T ss_dssp CTTCCEEECTTSCCCC-C--GG-GGGCTTCSEEECCSS-CCCCC---GGGGSCT-TCSEEECCSS-CCCCCGG--GT--T
T ss_pred CCCCCEEEecCCCCCC-C--cc-ccCCCccCEEECCCC-ccCCc---hhhcccC-CCCEEECcCC-cCCCchh--hc--c
Confidence 9999999999986332 1 22 345799999999984 55442 2233444 9999999996 5554322 33 5
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHh
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISA 566 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~ 566 (631)
+++|+.|+|++| .+++. .. ...+++|+.|+|++|.+++..+..
T Consensus 174 l~~L~~L~Ls~N-~i~~l--~~-l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 174 LTKLQNLYLSKN-HISDL--RA-LAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp CTTCCEEECCSS-CCCBC--GG-GTTCTTCSEEECCSEEEECCCCCC
T ss_pred CCCCCEEECcCC-CCCCC--hH-HccCCCCCEEEccCCcCcCCcccc
Confidence 899999999994 77764 23 345999999999999987755443
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.78 E-value=6.7e-09 Score=88.35 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=78.0
Q ss_pred CCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcC
Q 006794 467 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 546 (631)
Q Consensus 467 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 546 (631)
++|+.|+++++ .+++..+...+..++ +|+.|++++| .++.. ..+. .+++|+.|++++ +.++.. +......+
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~-~L~~L~l~~n-~l~~~--~~~~--~l~~L~~L~Ls~-n~i~~~-~~~~~~~l 87 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFE-ELEFLSTINV-GLTSI--ANLP--KLNKLKKLELSD-NRVSGG-LEVLAEKC 87 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCT-TCCEEECTTS-CCCCC--TTCC--CCTTCCEEECCS-SCCCSC-THHHHHHC
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcC-CCcEEECcCC-CCCCc--hhhh--cCCCCCEEECCC-Ccccch-HHHHhhhC
Confidence 45666666653 333222222223333 6777777764 44433 2122 467888888888 466653 23334458
Q ss_pred CcCCEEEecCCccChhh-HHhhhhccCCCccEEeccCCCCCCcchH--HHHHHhcCccccccccc
Q 006794 547 MFLSYLDVSKCAITDMG-ISALSHAEQLNLQVLSLSSCSEVSNKSM--PALKKLGKTLVGLNLQN 608 (631)
Q Consensus 547 ~~L~~L~L~~~~l~~~~-~~~l~~~~~~~L~~L~l~~c~~l~~~~~--~~l~~~~~~L~~L~l~~ 608 (631)
++|+.|++++|.+++.. ...+. .+++|++|++++|. ++.... ......+++|+.|++++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~--~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLK--KLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGG--GCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEECCCCcCCChHHHHHHh--hCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 88888888888887743 24444 77888888888865 554332 13455567788888763
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.75 E-value=3.8e-09 Score=91.99 Aligned_cols=132 Identities=21% Similarity=0.199 Sum_probs=79.8
Q ss_pred CCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcC
Q 006794 467 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 546 (631)
Q Consensus 467 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 546 (631)
++|+.|+++++ .+++..+...+..++ +|+.|++++| .++.. ..+. .+++|++|++++ +.++.. +..+...+
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~-~L~~L~l~~n-~l~~~--~~~~--~l~~L~~L~Ls~-N~l~~~-~~~~~~~l 94 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFV-NLEFLSLINV-GLISV--SNLP--KLPKLKKLELSE-NRIFGG-LDMLAEKL 94 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGG-GCCEEEEESS-CCCCC--SSCC--CCSSCCEEEEES-CCCCSC-CCHHHHHC
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCC-CCCEEeCcCC-CCCCh--hhhc--cCCCCCEEECcC-CcCchH-HHHHHhhC
Confidence 55666666653 333222222223333 6777777765 34433 2222 477888888888 466553 23334458
Q ss_pred CcCCEEEecCCccChhh-HHhhhhccCCCccEEeccCCCCCCcchH--HHHHHhcCccccccccccc
Q 006794 547 MFLSYLDVSKCAITDMG-ISALSHAEQLNLQVLSLSSCSEVSNKSM--PALKKLGKTLVGLNLQNCN 610 (631)
Q Consensus 547 ~~L~~L~L~~~~l~~~~-~~~l~~~~~~~L~~L~l~~c~~l~~~~~--~~l~~~~~~L~~L~l~~c~ 610 (631)
++|+.|++++|.+++.. +..+. .+++|+.|++++|+ ++.... ......+++|+.|++++|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~--~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLK--KLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGS--SCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccCCccCcchhHHHHh--cCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 88888888888887742 24444 67888888888865 543322 1244556788888888864
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.74 E-value=2.4e-09 Score=100.19 Aligned_cols=177 Identities=14% Similarity=0.105 Sum_probs=102.5
Q ss_pred CCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcC
Q 006794 387 GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLC 466 (631)
Q Consensus 387 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 466 (631)
...+.+++++.. ++... ....+.++.|+++++... .+. ...+..+++|++|++++|. +...... ....+
T Consensus 14 ~~~~~l~~~~~~-l~~~p-----~~~~~~l~~L~L~~n~l~-~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l 82 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVP-----SGIPADTEKLDLQSTGLA-TLS--DATFRGLTKLTWLNLDYNQ-LQTLSAG-VFDDL 82 (251)
T ss_dssp GGGTEEECTTCC-CSSCC-----SCCCTTCCEEECTTSCCC-CCC--TTTTTTCTTCCEEECTTSC-CCCCCTT-TTTTC
T ss_pred CCCeEEecCCCC-ccccC-----CCCCCCCCEEEccCCCcC-ccC--HhHhcCcccCCEEECCCCc-CCccCHh-HhccC
Confidence 345667766533 22111 111267888988886532 221 2235678889999988875 3321111 12345
Q ss_pred CCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcC
Q 006794 467 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 546 (631)
Q Consensus 467 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 546 (631)
++|+.|++++ +.++.... ..+...+ +|++|+++++ .++......+. .+++|+.|++++ +.++......+ ..+
T Consensus 83 ~~L~~L~L~~-n~l~~~~~-~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~~~-~~l 154 (251)
T 3m19_A 83 TELGTLGLAN-NQLASLPL-GVFDHLT-QLDKLYLGGN-QLKSLPSGVFD--RLTKLKELRLNT-NQLQSIPAGAF-DKL 154 (251)
T ss_dssp TTCCEEECTT-SCCCCCCT-TTTTTCT-TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTT-TTC
T ss_pred CcCCEEECCC-CcccccCh-hHhcccC-CCCEEEcCCC-cCCCcChhHhc--cCCcccEEECcC-CcCCccCHHHc-CcC
Confidence 8888888887 44442211 1122233 7888888874 55533222122 467888888887 46664332222 347
Q ss_pred CcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 547 MFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 547 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
++|+.|+|++|.++......+. .+++|+.|++++|+
T Consensus 155 ~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 155 TNLQTLSLSTNQLQSVPHGAFD--RLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSCC
T ss_pred cCCCEEECCCCcCCccCHHHHh--CCCCCCEEEeeCCc
Confidence 8888888888877754433343 66788888888865
No 109
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.74 E-value=2.8e-09 Score=101.89 Aligned_cols=202 Identities=15% Similarity=0.088 Sum_probs=120.5
Q ss_pred cCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcc
Q 006794 333 GLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNS 412 (631)
Q Consensus 333 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 412 (631)
.+++++++++.++. ++..+. . ..++++.|+++++. ++.... ..+..+++|+.|+++++. ++..... ..
T Consensus 8 ~l~~l~~l~~~~~~-l~~ip~-~---~~~~l~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~----~~ 75 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LTALPP-D---LPKDTTILHLSENL-LYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQVD----GT 75 (290)
T ss_dssp CSTTCCEEECTTSC-CSSCCS-C---CCTTCCEEECTTSC-CSEEEG-GGGTTCTTCCEEECTTSC-CCEEECC----SC
T ss_pred ccCCccEEECCCCC-CCcCCC-C---CCCCCCEEEcCCCc-CCccCH-HHhhcCCCCCEEECCCCc-cCcccCC----CC
Confidence 44666666666543 332110 1 12567788887753 332111 122356788888887754 3322111 23
Q ss_pred cCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhc
Q 006794 413 ASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESC 492 (631)
Q Consensus 413 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 492 (631)
+++|+.|+++++. +..+ +..+..+++|++|++++|. ++..... ....+++|+.|++++ +.++.... ..+...
T Consensus 76 l~~L~~L~Ls~N~-l~~l---~~~~~~l~~L~~L~l~~N~-l~~l~~~-~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~l 147 (290)
T 1p9a_G 76 LPVLGTLDLSHNQ-LQSL---PLLGQTLPALTVLDVSFNR-LTSLPLG-ALRGLGELQELYLKG-NELKTLPP-GLLTPT 147 (290)
T ss_dssp CTTCCEEECCSSC-CSSC---CCCTTTCTTCCEEECCSSC-CCCCCSS-TTTTCTTCCEEECTT-SCCCCCCT-TTTTTC
T ss_pred CCcCCEEECCCCc-CCcC---chhhccCCCCCEEECCCCc-CcccCHH-HHcCCCCCCEEECCC-CCCCccCh-hhcccc
Confidence 4889999999864 3333 2335678999999999985 3321111 123568999999998 44442211 112223
Q ss_pred ccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh
Q 006794 493 KAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 561 (631)
Q Consensus 493 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~ 561 (631)
+ +|+.|+++++ .++......+. .+++|+.|++++ +.++.... . ...+++|+.|+|++|.+..
T Consensus 148 ~-~L~~L~L~~N-~l~~l~~~~~~--~l~~L~~L~L~~-N~l~~ip~-~-~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 148 P-KLEKLSLANN-NLTELPAGLLN--GLENLDTLLLQE-NSLYTIPK-G-FFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp T-TCCEEECTTS-CCSCCCTTTTT--TCTTCCEEECCS-SCCCCCCT-T-TTTTCCCSEEECCSCCBCC
T ss_pred c-CCCEEECCCC-cCCccCHHHhc--CcCCCCEEECCC-CcCCccCh-h-hcccccCCeEEeCCCCccC
Confidence 3 8999999984 56543322222 478999999999 57763221 1 2336789999999998653
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.73 E-value=7e-09 Score=88.23 Aligned_cols=130 Identities=23% Similarity=0.187 Sum_probs=72.7
Q ss_pred cCCCcEEecccccCC-CccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhh
Q 006794 413 ASKLKSLTLVKCMGI-KDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLES 491 (631)
Q Consensus 413 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 491 (631)
.++|+.|++++|... ..+ +..+..+++|++|++++|. ++.. .....++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~------------------------ 64 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKL---EGLTDEFEELEFLSTINVG-LTSI---ANLPKLN------------------------ 64 (149)
T ss_dssp GGGCSEEECTTCBCBTTBC---CSCCTTCTTCCEEECTTSC-CCCC---TTCCCCT------------------------
T ss_pred CccCeEEEccCCcCChhHH---HHHHhhcCCCcEEECcCCC-CCCc---hhhhcCC------------------------
Confidence 367888888886432 122 1223456666666666653 2211 1111223
Q ss_pred cccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhH---Hhhh
Q 006794 492 CKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGI---SALS 568 (631)
Q Consensus 492 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~---~~l~ 568 (631)
+|++|+++++ .++... ..... .+++|++|++++ +.+++.........+++|+.|++++|.+++... ..+.
T Consensus 65 ---~L~~L~Ls~n-~i~~~~-~~~~~-~l~~L~~L~ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 137 (149)
T 2je0_A 65 ---KLKKLELSDN-RVSGGL-EVLAE-KCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFK 137 (149)
T ss_dssp ---TCCEEECCSS-CCCSCT-HHHHH-HCTTCCEEECTT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHH
T ss_pred ---CCCEEECCCC-cccchH-HHHhh-hCCCCCEEECCC-CcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHH
Confidence 5555555553 333321 11222 377888888887 467664332334458888888888888776443 2233
Q ss_pred hccCCCccEEeccC
Q 006794 569 HAEQLNLQVLSLSS 582 (631)
Q Consensus 569 ~~~~~~L~~L~l~~ 582 (631)
.+++|+.|++++
T Consensus 138 --~l~~L~~L~l~d 149 (149)
T 2je0_A 138 --LLPQLTYLDGYD 149 (149)
T ss_dssp --HCTTCCEETTBC
T ss_pred --HCCCcccccCCC
Confidence 677888888753
No 111
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.72 E-value=7.9e-10 Score=102.71 Aligned_cols=202 Identities=13% Similarity=0.048 Sum_probs=115.9
Q ss_pred CCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccC
Q 006794 335 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 414 (631)
Q Consensus 335 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 414 (631)
++|++|+++++. +...... ....+++|++|+++++..++..... .+..+++|+.|++++|..++..... ....++
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~--~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSH-AFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPD--ALKELP 105 (239)
T ss_dssp TTCCEEEEESCC-CSEECTT-TTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTT--SEECCT
T ss_pred CcccEEEEeCCc-ceEECHH-HccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHH--HhCCCC
Confidence 589999999875 5443221 2345799999999997434332111 1246799999999985445432211 112348
Q ss_pred CCcEEecccccCCCccccccccCCCCCCCc---eEeccCCCCCCHHHHHHHhhcCCCCc-EEecccccCCCchhhHHHHh
Q 006794 415 KLKSLTLVKCMGIKDMATEMPMLSPNCSLR---SLSIRNCPGFGNASLAMLGKLCPQLQ-HVDLSGLYGITDVGIFPLLE 490 (631)
Q Consensus 415 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~~~~~~l~~l~~~~~~L~-~L~l~~~~~l~~~~~~~l~~ 490 (631)
+|+.|++++|. +..++ .+..+++|+ +|++++|..++......+ ..+++|+ .|+++++ .++
T Consensus 106 ~L~~L~l~~n~-l~~lp----~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n-~l~--------- 169 (239)
T 2xwt_C 106 LLKFLGIFNTG-LKMFP----DLTKVYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNN-GFT--------- 169 (239)
T ss_dssp TCCEEEEEEEC-CCSCC----CCTTCCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSC-CCC---------
T ss_pred CCCEEeCCCCC-Ccccc----ccccccccccccEEECCCCcchhhcCcccc-cchhcceeEEEcCCC-CCc---------
Confidence 99999999975 33332 245666776 899988733432111111 2345566 6666552 222
Q ss_pred hcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcC-CcCCEEEecCCccChhhHHhhhh
Q 006794 491 SCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC-MFLSYLDVSKCAITDMGISALSH 569 (631)
Q Consensus 491 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~-~~L~~L~L~~~~l~~~~~~~l~~ 569 (631)
..... .. ..++|+.|+++++..++......+ ..+ ++|+.|++++|.++.....
T Consensus 170 ------------------~i~~~-~~--~~~~L~~L~L~~n~~l~~i~~~~~-~~l~~~L~~L~l~~N~l~~l~~~---- 223 (239)
T 2xwt_C 170 ------------------SVQGY-AF--NGTKLDAVYLNKNKYLTVIDKDAF-GGVYSGPSLLDVSQTSVTALPSK---- 223 (239)
T ss_dssp ------------------EECTT-TT--TTCEEEEEECTTCTTCCEECTTTT-TTCSBCCSEEECTTCCCCCCCCT----
T ss_pred ------------------ccCHh-hc--CCCCCCEEEcCCCCCcccCCHHHh-hccccCCcEEECCCCccccCChh----
Confidence 11100 01 125667777766323543322222 336 8888888888887653222
Q ss_pred ccCCCccEEeccCCC
Q 006794 570 AEQLNLQVLSLSSCS 584 (631)
Q Consensus 570 ~~~~~L~~L~l~~c~ 584 (631)
.+++|+.|.++++.
T Consensus 224 -~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 224 -GLEHLKELIARNTW 237 (239)
T ss_dssp -TCTTCSEEECTTC-
T ss_pred -HhccCceeeccCcc
Confidence 35688888888764
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.68 E-value=1.4e-08 Score=95.39 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=66.7
Q ss_pred hcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhh
Q 006794 385 AAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGK 464 (631)
Q Consensus 385 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 464 (631)
.+++|+.|+++++. ++... . ...+++|+.|++++|. +.++.. +..+++|++|++++|.. +.. ..+.
T Consensus 39 ~l~~L~~L~l~~n~-i~~l~---~-l~~l~~L~~L~L~~N~-i~~~~~----l~~l~~L~~L~L~~N~l-~~l--~~~~- 104 (263)
T 1xeu_A 39 ELSGVQNFNGDNSN-IQSLA---G-MQFFTNLKELHLSHNQ-ISDLSP----LKDLTKLEELSVNRNRL-KNL--NGIP- 104 (263)
T ss_dssp HHTTCSEEECTTSC-CCCCT---T-GGGCTTCCEEECCSSC-CCCCGG----GTTCSSCCEEECCSSCC-SCC--TTCC-
T ss_pred hcCcCcEEECcCCC-cccch---H-HhhCCCCCEEECCCCc-cCCChh----hccCCCCCEEECCCCcc-CCc--Cccc-
Confidence 46778888877764 32221 1 1123677777777653 333211 45566666666666642 210 0111
Q ss_pred cCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHh
Q 006794 465 LCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGN 544 (631)
Q Consensus 465 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 544 (631)
. ++|+.|+++++ .+++. .. +..++ +|+.|+++++ .+++.. .+. .+++|+.|++++ +.+++. .. ..
T Consensus 105 ~-~~L~~L~L~~N-~l~~~--~~-l~~l~-~L~~L~Ls~N-~i~~~~--~l~--~l~~L~~L~L~~-N~i~~~--~~-l~ 169 (263)
T 1xeu_A 105 S-ACLSRLFLDNN-ELRDT--DS-LIHLK-NLEILSIRNN-KLKSIV--MLG--FLSKLEVLDLHG-NEITNT--GG-LT 169 (263)
T ss_dssp C-SSCCEEECCSS-CCSBS--GG-GTTCT-TCCEEECTTS-CCCBCG--GGG--GCTTCCEEECTT-SCCCBC--TT-ST
T ss_pred c-CcccEEEccCC-ccCCC--hh-hcCcc-cccEEECCCC-cCCCCh--HHc--cCCCCCEEECCC-CcCcch--HH-hc
Confidence 1 45555555552 33321 11 11222 4555555552 333321 111 245555555555 344433 11 12
Q ss_pred cCCcCCEEEecCCccC
Q 006794 545 NCMFLSYLDVSKCAIT 560 (631)
Q Consensus 545 ~~~~L~~L~L~~~~l~ 560 (631)
.+++|+.|++++|.++
T Consensus 170 ~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TCCCCCEEEEEEEEEE
T ss_pred cCCCCCEEeCCCCccc
Confidence 3455555555555443
No 113
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.67 E-value=8e-09 Score=96.62 Aligned_cols=160 Identities=15% Similarity=0.129 Sum_probs=98.9
Q ss_pred CCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcC
Q 006794 387 GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLC 466 (631)
Q Consensus 387 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 466 (631)
++++.|+++++. +...... ....+++|+.|+++++. +..+ ....+..+++|++|++++|. ++.... .....+
T Consensus 35 ~~l~~L~L~~n~-l~~~~~~--~~~~l~~L~~L~L~~n~-l~~~--~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l 106 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSDA--TFRGLTKLTWLNLDYNQ-LQTL--SAGVFDDLTELGTLGLANNQ-LASLPL-GVFDHL 106 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTT--TTTTCTTCCEEECTTSC-CCCC--CTTTTTTCTTCCEEECTTSC-CCCCCT-TTTTTC
T ss_pred CCCCEEEccCCC-cCccCHh--HhcCcccCCEEECCCCc-CCcc--CHhHhccCCcCCEEECCCCc-ccccCh-hHhccc
Confidence 678999998865 2221110 11224899999999864 3332 12235678899999999875 332111 122356
Q ss_pred CCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcC
Q 006794 467 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 546 (631)
Q Consensus 467 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 546 (631)
++|+.|++++ +.++.... ..+...+ +|++|+++++ .++......+. .+++|++|++++ +.++......+ ..+
T Consensus 107 ~~L~~L~L~~-N~l~~~~~-~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~-~~l 178 (251)
T 3m19_A 107 TQLDKLYLGG-NQLKSLPS-GVFDRLT-KLKELRLNTN-QLQSIPAGAFD--KLTNLQTLSLST-NQLQSVPHGAF-DRL 178 (251)
T ss_dssp TTCCEEECCS-SCCCCCCT-TTTTTCT-TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCSCCCTTTT-TTC
T ss_pred CCCCEEEcCC-CcCCCcCh-hHhccCC-cccEEECcCC-cCCccCHHHcC--cCcCCCEEECCC-CcCCccCHHHH-hCC
Confidence 8999999988 45542211 1122233 8999999884 55543332222 478999999988 57765433223 458
Q ss_pred CcCCEEEecCCccChh
Q 006794 547 MFLSYLDVSKCAITDM 562 (631)
Q Consensus 547 ~~L~~L~L~~~~l~~~ 562 (631)
++|+.|+|++|.++..
T Consensus 179 ~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 179 GKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCCEEECCSCCBCTT
T ss_pred CCCCEEEeeCCceeCC
Confidence 8999999999987654
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.62 E-value=6.4e-09 Score=90.56 Aligned_cols=63 Identities=25% Similarity=0.256 Sum_probs=42.9
Q ss_pred cCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhH---HhhhhccCCCccEEeccCCC
Q 006794 519 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGI---SALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 519 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~---~~l~~~~~~~L~~L~l~~c~ 584 (631)
.+++|+.|++++| .+++.........+++|+.|++++|.++.... ..+. .+++|++|++++|.
T Consensus 93 ~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 93 KLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK--LLPQLTYLDGYDRE 158 (168)
T ss_dssp HCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT--TCSSCCEETTEETT
T ss_pred hCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH--hCccCcEecCCCCC
Confidence 4778888888874 66653221223458889999998888776443 2333 78889999988875
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.47 E-value=2.4e-08 Score=91.04 Aligned_cols=143 Identities=20% Similarity=0.156 Sum_probs=85.7
Q ss_pred CCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhc
Q 006794 440 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLH 519 (631)
Q Consensus 440 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 519 (631)
.+.+++|+++++. ++..........+++|+.|++++ +.++..... .+...+ +|++|+++++ .++......+. .
T Consensus 31 ~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~-~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~--~ 103 (220)
T 2v70_A 31 PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSN-NKITDIEEG-AFEGAS-GVNEILLTSN-RLENVQHKMFK--G 103 (220)
T ss_dssp CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCS-SCCCEECTT-TTTTCT-TCCEEECCSS-CCCCCCGGGGT--T
T ss_pred CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCC-CcCCEECHH-HhCCCC-CCCEEECCCC-ccCccCHhHhc--C
Confidence 4567899999875 33221111234568899999988 445432111 122233 7888888874 45443332222 4
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHH
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPA 593 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~ 593 (631)
+++|++|++++ +.++......+ ..+++|+.|+|++|.++......+. .+++|+.|++++++-..+..+.+
T Consensus 104 l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~c~c~l~~ 173 (220)
T 2v70_A 104 LESLKTLMLRS-NRITCVGNDSF-IGLSSVRLLSLYDNQITTVAPGAFD--TLHSLSTLNLLANPFNCNCYLAW 173 (220)
T ss_dssp CSSCCEEECTT-SCCCCBCTTSS-TTCTTCSEEECTTSCCCCBCTTTTT--TCTTCCEEECCSCCEECSGGGHH
T ss_pred CcCCCEEECCC-CcCCeECHhHc-CCCccCCEEECCCCcCCEECHHHhc--CCCCCCEEEecCcCCcCCCchHH
Confidence 78888888888 56664432223 3478888888888887765444444 67788888888866333333333
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.47 E-value=1.4e-07 Score=88.51 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=7.4
Q ss_pred CCcCCEEEecCCccCh
Q 006794 546 CMFLSYLDVSKCAITD 561 (631)
Q Consensus 546 ~~~L~~L~L~~~~l~~ 561 (631)
+++|+.|++++|.+++
T Consensus 149 l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 149 LSKLEVLDLHGNEITN 164 (263)
T ss_dssp CTTCCEEECTTSCCCB
T ss_pred CCCCCEEECCCCcCcc
Confidence 4444444444444443
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.47 E-value=1.4e-08 Score=91.89 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=32.7
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
+++|++|++++ +.++...... ...+++|+.|++++|.+++.....+. .+++|++|++++|+
T Consensus 99 l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 99 LTQLKELALNT-NQLQSLPDGV-FDKLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDNP 159 (208)
T ss_dssp CTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSCC
T ss_pred ccCCCEEEcCC-CcCcccCHhH-hccCCcCCEEECCCCccceeCHHHhc--cCCCccEEEecCCC
Confidence 55666666666 3454322111 23366677777777666543322222 45667777776654
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.44 E-value=4.6e-08 Score=96.83 Aligned_cols=58 Identities=21% Similarity=0.131 Sum_probs=29.2
Q ss_pred CCCcEEecccccCCCccccccccCC-CCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEeccc
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPMLS-PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSG 476 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 476 (631)
+.++.|+++++. +..+.. ..+. .+++|++|++++|. +....... ...+++|+.|+|++
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~--~~~~~~l~~L~~L~L~~N~-i~~i~~~~-~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRA--EWTPTRLTNLHSLLLSHNH-LNFISSEA-FVPVPNLRYLDLSS 97 (361)
T ss_dssp TTCSEEECCSSC-CCEECT--TSSSSCCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCS
T ss_pred CCCCEEECCCCC-CCccCh--hhhhhcccccCEEECCCCc-CCccChhh-ccCCCCCCEEECCC
Confidence 457777777743 333221 1123 56677777777664 22111111 12346666666666
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.41 E-value=1.7e-07 Score=97.56 Aligned_cols=192 Identities=14% Similarity=0.129 Sum_probs=117.4
Q ss_pred CCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCC
Q 006794 361 LNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPN 440 (631)
Q Consensus 361 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 440 (631)
.+|+.|+++++. ++. +..- -+++|+.|+++++. ++... ..+++|+.|++++|. +..++. +.
T Consensus 59 ~~L~~L~Ls~n~-L~~--lp~~--l~~~L~~L~Ls~N~-l~~ip------~~l~~L~~L~Ls~N~-l~~ip~----l~-- 119 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSS--LPDN--LPPQITVLEITQNA-LISLP------ELPASLEYLDACDNR-LSTLPE----LP-- 119 (571)
T ss_dssp TTCSEEECCSSC-CSC--CCSC--CCTTCSEEECCSSC-CSCCC------CCCTTCCEEECCSSC-CSCCCC----CC--
T ss_pred CCccEEEeCCCC-CCc--cCHh--HcCCCCEEECcCCC-Ccccc------cccCCCCEEEccCCC-CCCcch----hh--
Confidence 589999998863 432 1110 14789999998865 33322 234899999999864 333322 22
Q ss_pred CCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcC
Q 006794 441 CSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHS 520 (631)
Q Consensus 441 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 520 (631)
.+|++|++++|. ++.. .. .+++|+.|++++ +.++. +.. . .++|+.|+++++ .++.... . .
T Consensus 120 ~~L~~L~Ls~N~-l~~l--p~---~l~~L~~L~Ls~-N~l~~--lp~---~-l~~L~~L~Ls~N-~L~~lp~----l--~ 179 (571)
T 3cvr_A 120 ASLKHLDVDNNQ-LTML--PE---LPALLEYINADN-NQLTM--LPE---L-PTSLEVLSVRNN-QLTFLPE----L--P 179 (571)
T ss_dssp TTCCEEECCSSC-CSCC--CC---CCTTCCEEECCS-SCCSC--CCC---C-CTTCCEEECCSS-CCSCCCC----C--C
T ss_pred cCCCEEECCCCc-CCCC--CC---cCccccEEeCCC-CccCc--CCC---c-CCCcCEEECCCC-CCCCcch----h--h
Confidence 289999999886 3321 11 468899999988 44543 111 1 238999999885 4554211 1 2
Q ss_pred cccCeecccCCCCCChHHH--HHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHH
Q 006794 521 ETLELLNLDGCRKITDASL--VAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKK 596 (631)
Q Consensus 521 ~~L~~L~l~~c~~l~~~~~--~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 596 (631)
++|+.|+|++ +.++.... ..+....+.|+.|+|++|.++... ..+. .+++|+.|++++|+ ++......+..
T Consensus 180 ~~L~~L~Ls~-N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp-~~l~--~l~~L~~L~L~~N~-l~~~~p~~l~~ 252 (571)
T 3cvr_A 180 ESLEALDVST-NLLESLPAVPVRNHHSEETEIFFRCRENRITHIP-ENIL--SLDPTCTIILEDNP-LSSRIRESLSQ 252 (571)
T ss_dssp TTCCEEECCS-SCCSSCCCCC--------CCEEEECCSSCCCCCC-GGGG--GSCTTEEEECCSSS-CCHHHHHHHHH
T ss_pred CCCCEEECcC-CCCCchhhHHHhhhcccccceEEecCCCcceecC-HHHh--cCCCCCEEEeeCCc-CCCcCHHHHHH
Confidence 7899999988 47763221 011111223399999999887532 2233 47899999999965 76665555444
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.40 E-value=1.8e-08 Score=105.50 Aligned_cols=124 Identities=19% Similarity=0.154 Sum_probs=78.8
Q ss_pred CCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcC
Q 006794 467 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 546 (631)
Q Consensus 467 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 546 (631)
..|+.|++++ +.++. +.. +..++ +|+.|+++++ .++... ..+. .+++|+.|+|++ +.++.. .. ...+
T Consensus 441 ~~L~~L~Ls~-n~l~~--lp~-~~~l~-~L~~L~Ls~N-~l~~lp-~~~~--~l~~L~~L~Ls~-N~l~~l--p~-l~~l 507 (567)
T 1dce_A 441 ADVRVLHLAH-KDLTV--LCH-LEQLL-LVTHLDLSHN-RLRALP-PALA--ALRCLEVLQASD-NALENV--DG-VANL 507 (567)
T ss_dssp TTCSEEECTT-SCCSS--CCC-GGGGT-TCCEEECCSS-CCCCCC-GGGG--GCTTCCEEECCS-SCCCCC--GG-GTTC
T ss_pred cCceEEEecC-CCCCC--CcC-ccccc-cCcEeecCcc-cccccc-hhhh--cCCCCCEEECCC-CCCCCC--cc-cCCC
Confidence 4577888877 34442 222 23333 7888888874 454221 1222 478888999988 577653 23 3458
Q ss_pred CcCCEEEecCCccChhh-HHhhhhccCCCccEEeccCCCCCCcc--hHHHHHHhcCccccccc
Q 006794 547 MFLSYLDVSKCAITDMG-ISALSHAEQLNLQVLSLSSCSEVSNK--SMPALKKLGKTLVGLNL 606 (631)
Q Consensus 547 ~~L~~L~L~~~~l~~~~-~~~l~~~~~~~L~~L~l~~c~~l~~~--~~~~l~~~~~~L~~L~l 606 (631)
++|+.|+|++|.++... ...+. .+++|+.|++++|+ ++.. ....+...+|+|+.|++
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~~l~--~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQPLV--SCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGG--GCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCCCCcHHHh--cCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 88999999999887654 44444 67789999998865 5433 23345556777887753
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.39 E-value=1.1e-07 Score=86.60 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=50.9
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 574 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~ 574 (631)
+|++|+|+++ .++......+. .+++|+.|++++ +.++......+ ..+++|+.|+|++|.++......+. .+++
T Consensus 81 ~L~~L~Ls~N-~l~~l~~~~f~--~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~ 153 (220)
T 2v9t_B 81 SLNSLVLYGN-KITELPKSLFE--GLFSLQLLLLNA-NKINCLRVDAF-QDLHNLNLLSLYDNKLQTIAKGTFS--PLRA 153 (220)
T ss_dssp SCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTT--TCTT
T ss_pred CCCEEECCCC-cCCccCHhHcc--CCCCCCEEECCC-CCCCEeCHHHc-CCCCCCCEEECCCCcCCEECHHHHh--CCCC
Confidence 5666666552 33322111111 367777777777 46654332222 2477788888888776654433333 5667
Q ss_pred ccEEeccCCCCCCcchHHH
Q 006794 575 LQVLSLSSCSEVSNKSMPA 593 (631)
Q Consensus 575 L~~L~l~~c~~l~~~~~~~ 593 (631)
|+.|++++++-..+..+.+
T Consensus 154 L~~L~L~~N~~~c~c~l~~ 172 (220)
T 2v9t_B 154 IQTMHLAQNPFICDCHLKW 172 (220)
T ss_dssp CCEEECCSSCEECSGGGHH
T ss_pred CCEEEeCCCCcCCCCccHH
Confidence 7888887766433333443
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.38 E-value=4.2e-09 Score=103.91 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=21.3
Q ss_pred CCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCC
Q 006794 335 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCC 372 (631)
Q Consensus 335 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 372 (631)
+++++|+++++. ++.... ..+..+++|++|+|+++.
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~-~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQK-GAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TTCSEEEEESCC-CSEECT-TSSTTCTTCCEEEEECCT
T ss_pred CCCCEEEccCCc-CCCcCH-HHHcCCCCCCEEECcCCC
Confidence 567788887764 443221 122445777777777753
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.38 E-value=4.3e-08 Score=89.38 Aligned_cols=121 Identities=20% Similarity=0.206 Sum_probs=80.3
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 574 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~ 574 (631)
+|+.|+++++ .++......+. .+++|++|+|++ +.++.... .....+++|+.|+|++|.++......+. .+++
T Consensus 57 ~L~~L~Ls~N-~i~~~~~~~~~--~l~~L~~L~Ls~-N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~ 129 (220)
T 2v9t_B 57 KLRRIDLSNN-QISELAPDAFQ--GLRSLNSLVLYG-NKITELPK-SLFEGLFSLQLLLLNANKINCLRVDAFQ--DLHN 129 (220)
T ss_dssp TCCEEECCSS-CCCEECTTTTT--TCSSCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTT
T ss_pred CCCEEECCCC-cCCCcCHHHhh--CCcCCCEEECCC-CcCCccCH-hHccCCCCCCEEECCCCCCCEeCHHHcC--CCCC
Confidence 5556666552 33332222222 479999999999 57774332 2234589999999999998875555555 7889
Q ss_pred ccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCCHHHHHHHHhhc
Q 006794 575 LQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESL 624 (631)
Q Consensus 575 L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~l~~~l 624 (631)
|+.|++++|. ++...... ....++|+.|++++++-..+..+.++.+++
T Consensus 130 L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l 177 (220)
T 2v9t_B 130 LNLLSLYDNK-LQTIAKGT-FSPLRAIQTMHLAQNPFICDCHLKWLADYL 177 (220)
T ss_dssp CCEEECCSSC-CSCCCTTT-TTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred CCEEECCCCc-CCEECHHH-HhCCCCCCEEEeCCCCcCCCCccHHHHHHH
Confidence 9999999965 65443332 234567999999996554555566665544
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.38 E-value=3e-07 Score=80.53 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=48.0
Q ss_pred cCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhh-HHhhhhccCCCccEEeccCCCCCCcchH--HHHH
Q 006794 519 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMG-ISALSHAEQLNLQVLSLSSCSEVSNKSM--PALK 595 (631)
Q Consensus 519 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~-~~~l~~~~~~~L~~L~l~~c~~l~~~~~--~~l~ 595 (631)
.+++|+.|++++ +.++.... .+...+++|+.|++++|.+++.. +..+. .+++|+.|++++|+ ++.... ..+.
T Consensus 62 ~l~~L~~L~Ls~-N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~--~l~~L~~L~l~~N~-i~~~~~~~~~~~ 136 (176)
T 1a9n_A 62 LLRRLKTLLVNN-NRICRIGE-GLDQALPDLTELILTNNSLVELGDLDPLA--SLKSLTYLCILRNP-VTNKKHYRLYVI 136 (176)
T ss_dssp CCSSCCEEECCS-SCCCEECS-CHHHHCTTCCEEECCSCCCCCGGGGGGGG--GCTTCCEEECCSSG-GGGSTTHHHHHH
T ss_pred cCCCCCEEECCC-CcccccCc-chhhcCCCCCEEECCCCcCCcchhhHhhh--cCCCCCEEEecCCC-CCCcHhHHHHHH
Confidence 356677777766 45554321 12234677777777777765532 22333 56677777777755 432211 1134
Q ss_pred HhcCcccccccccc
Q 006794 596 KLGKTLVGLNLQNC 609 (631)
Q Consensus 596 ~~~~~L~~L~l~~c 609 (631)
..+++|+.|+++++
T Consensus 137 ~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 137 YKVPQVRVLDFQKV 150 (176)
T ss_dssp HHCTTCSEETTEEC
T ss_pred HHCCccceeCCCcC
Confidence 45666777777774
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.36 E-value=1.9e-07 Score=81.71 Aligned_cols=85 Identities=12% Similarity=0.021 Sum_probs=53.1
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHH--hhhhccC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGIS--ALSHAEQ 572 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~--~l~~~~~ 572 (631)
+|++|+++++ .++......+. .+++|++|++++ +.+++.........+++|+.|++++|.++..... .+. ..+
T Consensus 65 ~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~-~~l 139 (176)
T 1a9n_A 65 RLKTLLVNNN-RICRIGEGLDQ--ALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI-YKV 139 (176)
T ss_dssp SCCEEECCSS-CCCEECSCHHH--HCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHH-HHC
T ss_pred CCCEEECCCC-cccccCcchhh--cCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHH-HHC
Confidence 6777777663 44432211112 478888888888 4676533211234588999999999987653221 112 378
Q ss_pred CCccEEeccCCC
Q 006794 573 LNLQVLSLSSCS 584 (631)
Q Consensus 573 ~~L~~L~l~~c~ 584 (631)
++|+.|+++++.
T Consensus 140 ~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 140 PQVRVLDFQKVK 151 (176)
T ss_dssp TTCSEETTEECC
T ss_pred CccceeCCCcCC
Confidence 899999998865
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.35 E-value=7.5e-08 Score=87.74 Aligned_cols=136 Identities=14% Similarity=0.111 Sum_probs=85.7
Q ss_pred CCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcc
Q 006794 414 SKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK 493 (631)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 493 (631)
+.++.|+++++. +..+.. ...+..+++|++|+++++. ++......+ ..+++|+.|++++ +.++.... ..+..++
T Consensus 32 ~~~~~L~L~~N~-l~~~~~-~~~~~~l~~L~~L~L~~N~-i~~i~~~~~-~~l~~L~~L~Ls~-N~l~~~~~-~~~~~l~ 105 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEA-TGIFKKLPQLRKINFSNNK-ITDIEEGAF-EGASGVNEILLTS-NRLENVQH-KMFKGLE 105 (220)
T ss_dssp TTCSEEECCSSC-CCEECC-CCCGGGCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCS-SCCCCCCG-GGGTTCS
T ss_pred CCCCEEEcCCCc-CCccCc-hhhhccCCCCCEEECCCCc-CCEECHHHh-CCCCCCCEEECCC-CccCccCH-hHhcCCc
Confidence 567899998854 333311 1124578899999999875 332211122 3468999999998 44443221 1223333
Q ss_pred cCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh
Q 006794 494 AGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 561 (631)
Q Consensus 494 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~ 561 (631)
+|++|+++++ .++......+. .+++|+.|+|++ +.++......+ ..+++|+.|+|++|.+..
T Consensus 106 -~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 106 -SLKTLMLRSN-RITCVGNDSFI--GLSSVRLLSLYD-NQITTVAPGAF-DTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp -SCCEEECTTS-CCCCBCTTSST--TCTTCSEEECTT-SCCCCBCTTTT-TTCTTCCEEECCSCCEEC
T ss_pred -CCCEEECCCC-cCCeECHhHcC--CCccCCEEECCC-CcCCEECHHHh-cCCCCCCEEEecCcCCcC
Confidence 8999999884 55543222222 478999999998 57765433333 348899999999998653
No 127
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.28 E-value=1.2e-05 Score=70.00 Aligned_cols=125 Identities=16% Similarity=0.198 Sum_probs=67.4
Q ss_pred HHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcc--cCccEEecCCCCCCchHHHHHHHhh--cCcccCeecccCC
Q 006794 456 NASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCK--AGLVKVNLSGCLNLTDEVVLALARL--HSETLELLNLDGC 531 (631)
Q Consensus 456 ~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~--~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~L~~L~l~~c 531 (631)
+..+..+...-+.|++|+|+++..++++|...+.+... ..|+.|+|++| .+.+.+...++.. ..+.|++|+|++
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~- 107 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES- 107 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS-
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC-
Confidence 34455555555677777777644777777666655432 35666666663 5665555444431 235566666655
Q ss_pred CCCChHHHHHHHhcC---CcCCEEEecCC---ccChhhHHhhhh--ccCCCccEEeccC
Q 006794 532 RKITDASLVAIGNNC---MFLSYLDVSKC---AITDMGISALSH--AEQLNLQVLSLSS 582 (631)
Q Consensus 532 ~~l~~~~~~~l~~~~---~~L~~L~L~~~---~l~~~~~~~l~~--~~~~~L~~L~l~~ 582 (631)
+.|++.+...+...+ +.|++|+|+++ .+.+.+...+.. ...+.|.+|+++.
T Consensus 108 N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 108 NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 466666665555322 34666666543 345444333221 1444555555554
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.26 E-value=9.2e-07 Score=92.07 Aligned_cols=191 Identities=14% Similarity=0.078 Sum_probs=123.5
Q ss_pred CCcceEeccCCCCCChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccC
Q 006794 335 QKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSAS 414 (631)
Q Consensus 335 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 414 (631)
.+|+.|+++++. +...+ . ..+++|+.|+++++ .++. +. ..+++|+.|++++|. ++.... + ..
T Consensus 59 ~~L~~L~Ls~n~-L~~lp--~--~l~~~L~~L~Ls~N-~l~~--ip---~~l~~L~~L~Ls~N~-l~~ip~---l---~~ 120 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLP--D--NLPPQITVLEITQN-ALIS--LP---ELPASLEYLDACDNR-LSTLPE---L---PA 120 (571)
T ss_dssp TTCSEEECCSSC-CSCCC--S--CCCTTCSEEECCSS-CCSC--CC---CCCTTCCEEECCSSC-CSCCCC---C---CT
T ss_pred CCccEEEeCCCC-CCccC--H--hHcCCCCEEECcCC-CCcc--cc---cccCCCCEEEccCCC-CCCcch---h---hc
Confidence 489999999875 44311 1 11478999999996 4432 12 347999999999875 333221 1 13
Q ss_pred CCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhccc
Q 006794 415 KLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKA 494 (631)
Q Consensus 415 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 494 (631)
+|+.|++++|. +..++. .+++|+.|++++|. ++. +...+++|+.|+++++ .++. +..+ . +
T Consensus 121 ~L~~L~Ls~N~-l~~lp~------~l~~L~~L~Ls~N~-l~~-----lp~~l~~L~~L~Ls~N-~L~~--lp~l-~---~ 180 (571)
T 3cvr_A 121 SLKHLDVDNNQ-LTMLPE------LPALLEYINADNNQ-LTM-----LPELPTSLEVLSVRNN-QLTF--LPEL-P---E 180 (571)
T ss_dssp TCCEEECCSSC-CSCCCC------CCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCSC--CCCC-C---T
T ss_pred CCCEEECCCCc-CCCCCC------cCccccEEeCCCCc-cCc-----CCCcCCCcCEEECCCC-CCCC--cchh-h---C
Confidence 99999999964 333321 57999999999986 332 1114689999999984 4543 2111 1 3
Q ss_pred CccEEecCCCCCCchHHH-H-HHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhh
Q 006794 495 GLVKVNLSGCLNLTDEVV-L-ALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALS 568 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~-~-~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~ 568 (631)
+|+.|+++++ .++.... . .+.. ..+.|+.|++++ +.++... ..+.. +++|+.|+|++|.++......+.
T Consensus 181 ~L~~L~Ls~N-~L~~lp~~~~~L~~-~~~~L~~L~Ls~-N~l~~lp-~~l~~-l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 181 SLEALDVSTN-LLESLPAVPVRNHH-SEETEIFFRCRE-NRITHIP-ENILS-LDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp TCCEEECCSS-CCSSCCCCC---------CCEEEECCS-SCCCCCC-GGGGG-SCTTEEEECCSSSCCHHHHHHHH
T ss_pred CCCEEECcCC-CCCchhhHHHhhhc-ccccceEEecCC-CcceecC-HHHhc-CCCCCEEEeeCCcCCCcCHHHHH
Confidence 8999999985 5552211 0 1111 123349999999 5777432 22334 99999999999999887666554
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.26 E-value=6.2e-07 Score=82.21 Aligned_cols=82 Identities=16% Similarity=0.083 Sum_probs=46.4
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 574 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~ 574 (631)
+|+.|+++++ .++......+. .+++|+.|++++ +.++... .. ...+++|+.|+|++|.++......+. .+++
T Consensus 89 ~L~~L~Ls~N-~l~~l~~~~~~--~l~~L~~L~Ls~-N~l~~lp-~~-~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~ 160 (229)
T 3e6j_A 89 QLTVLDLGTN-QLTVLPSAVFD--RLVHLKELFMCC-NKLTELP-RG-IERLTHLTHLALDQNQLKSIPHGAFD--RLSS 160 (229)
T ss_dssp TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCCSCC-TT-GGGCTTCSEEECCSSCCCCCCTTTTT--TCTT
T ss_pred CcCEEECCCC-cCCccChhHhC--cchhhCeEeccC-CcccccC-cc-cccCCCCCEEECCCCcCCccCHHHHh--CCCC
Confidence 5666666553 33322111111 367777777777 4665321 11 24577788888888776654333333 5667
Q ss_pred ccEEeccCCC
Q 006794 575 LQVLSLSSCS 584 (631)
Q Consensus 575 L~~L~l~~c~ 584 (631)
|+.|++++++
T Consensus 161 L~~L~l~~N~ 170 (229)
T 3e6j_A 161 LTHAYLFGNP 170 (229)
T ss_dssp CCEEECTTSC
T ss_pred CCEEEeeCCC
Confidence 8888887765
No 130
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.24 E-value=2.2e-07 Score=84.02 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=60.3
Q ss_pred cCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhc
Q 006794 519 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLG 598 (631)
Q Consensus 519 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 598 (631)
.+++|++|++++ +.++..... ....+++|+.|++++|.++......+. .+++|+.|++++|. ++.... .....+
T Consensus 74 ~l~~L~~L~Ls~-n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~-l~~~~~-~~~~~l 147 (208)
T 2o6s_A 74 KLTSLTYLNLST-NQLQSLPNG-VFDKLTQLKELALNTNQLQSLPDGVFD--KLTQLKDLRLYQNQ-LKSVPD-GVFDRL 147 (208)
T ss_dssp TCTTCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC-CSCCCT-TTTTTC
T ss_pred CCCCcCEEECCC-CcCCccCHh-HhcCccCCCEEEcCCCcCcccCHhHhc--cCCcCCEEECCCCc-cceeCH-HHhccC
Confidence 467888888888 466543222 224589999999999998864433334 68899999999964 654322 223446
Q ss_pred Cccccccccccc
Q 006794 599 KTLVGLNLQNCN 610 (631)
Q Consensus 599 ~~L~~L~l~~c~ 610 (631)
++|+.|++++++
T Consensus 148 ~~L~~L~l~~N~ 159 (208)
T 2o6s_A 148 TSLQYIWLHDNP 159 (208)
T ss_dssp TTCCEEECCSCC
T ss_pred CCccEEEecCCC
Confidence 789999999954
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.23 E-value=1.7e-07 Score=92.67 Aligned_cols=170 Identities=18% Similarity=0.135 Sum_probs=110.5
Q ss_pred CCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhc
Q 006794 440 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLH 519 (631)
Q Consensus 440 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 519 (631)
.+.++.|+++++. ++......+...+++|+.|++++ +.++..... .+..++ +|++|+|+++ .++......+. .
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~-~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~--~ 110 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSE-AFVPVP-NLRYLDLSSN-HLHTLDEFLFS--D 110 (361)
T ss_dssp CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCS-SCCCEECTT-TTTTCT-TCCEEECCSS-CCCEECTTTTT--T
T ss_pred CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCC-CcCCccChh-hccCCC-CCCEEECCCC-cCCcCCHHHhC--C
Confidence 4679999999985 44322222222579999999998 455432211 122333 8999999994 56543332222 4
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhh-ccCCCccEEeccCCCCCCcchHHHHHHhc
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSH-AEQLNLQVLSLSSCSEVSNKSMPALKKLG 598 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 598 (631)
+++|+.|+|++ +.++......+ ..+++|+.|+|++|.++......+.. ..+++|+.|++++|. ++......+....
T Consensus 111 l~~L~~L~L~~-N~i~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 187 (361)
T 2xot_A 111 LQALEVLLLYN-NHIVVVDRNAF-EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLP 187 (361)
T ss_dssp CTTCCEEECCS-SCCCEECTTTT-TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSC
T ss_pred CcCCCEEECCC-CcccEECHHHh-CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhcc
Confidence 79999999999 57775433333 45899999999999987654443311 257899999999964 7766555554443
Q ss_pred C-cccccccccccCCCHHHHHH
Q 006794 599 K-TLVGLNLQNCNSINSSTVAR 619 (631)
Q Consensus 599 ~-~L~~L~l~~c~~l~~~~~~~ 619 (631)
. .++.|++++++--.+-.+..
T Consensus 188 ~~~l~~l~l~~N~~~C~C~l~~ 209 (361)
T 2xot_A 188 AWVKNGLYLHNNPLECDCKLYQ 209 (361)
T ss_dssp HHHHTTEECCSSCEECCHHHHH
T ss_pred HhhcceEEecCCCccCCcCcHH
Confidence 2 15889999955444544443
No 132
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.18 E-value=1.7e-05 Score=69.01 Aligned_cols=124 Identities=16% Similarity=0.151 Sum_probs=93.4
Q ss_pred hhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhh--cCcccCeecccCCCCCChHHHHHHH---hcCCcCCEEEecCC
Q 006794 483 VGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARL--HSETLELLNLDGCRKITDASLVAIG---NNCMFLSYLDVSKC 557 (631)
Q Consensus 483 ~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~ 557 (631)
+.+..+...-+ .|+.|+|++++.+.+.+...++.. ....|+.|+|++ +.+++.+...++ ..-+.|++|+|++|
T Consensus 31 ~~l~~ll~~n~-~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 31 SCINRLREDDT-DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHTTCS-SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHhcCC-CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 34555544443 899999998668999888777762 347899999999 599998887776 34578999999999
Q ss_pred ccChhhHHhhhhc--cCCCccEEeccCCC--CCCcchHHH---HHHhcCccccccccc
Q 006794 558 AITDMGISALSHA--EQLNLQVLSLSSCS--EVSNKSMPA---LKKLGKTLVGLNLQN 608 (631)
Q Consensus 558 ~l~~~~~~~l~~~--~~~~L~~L~l~~c~--~l~~~~~~~---l~~~~~~L~~L~l~~ 608 (631)
.|++.+...+++. ....|++|+|+++. .+.+.+-.. .....+.|.+|+++.
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 9999999887732 56679999998753 466654333 334456799999986
No 133
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.13 E-value=8.8e-07 Score=82.07 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=37.3
Q ss_pred cCCCCCcCCCCHHHHHHHhccCCCcccch-hhhhhhHHHHHHHh
Q 006794 43 FENQPSIDVLPDECLYEIFRRLPSGKERS-FAACVSKKWLMMLT 85 (631)
Q Consensus 43 ~~~~~~i~~LP~eil~~If~~L~~~~d~~-~~~~Vcr~W~~~~~ 85 (631)
+.....+..||+||+..||.||+ .++++ ++++|||+|+.++.
T Consensus 45 ~~~~~~~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 45 AEAVEYLAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp --CCCCTTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHT
T ss_pred cccccChhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhc
Confidence 33456889999999999999999 99999 99999999999974
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.11 E-value=5.5e-07 Score=82.60 Aligned_cols=85 Identities=14% Similarity=0.075 Sum_probs=61.2
Q ss_pred cCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhc
Q 006794 519 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLG 598 (631)
Q Consensus 519 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 598 (631)
.+++|+.|+|++ +.++...... ...+++|+.|+|++|.++... ..+. .+++|+.|++++|. ++..... .....
T Consensus 86 ~l~~L~~L~Ls~-N~l~~l~~~~-~~~l~~L~~L~Ls~N~l~~lp-~~~~--~l~~L~~L~L~~N~-l~~~~~~-~~~~l 158 (229)
T 3e6j_A 86 SLTQLTVLDLGT-NQLTVLPSAV-FDRLVHLKELFMCCNKLTELP-RGIE--RLTHLTHLALDQNQ-LKSIPHG-AFDRL 158 (229)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSCCCSCC-TTGG--GCTTCSEEECCSSC-CCCCCTT-TTTTC
T ss_pred cCCCcCEEECCC-CcCCccChhH-hCcchhhCeEeccCCcccccC-cccc--cCCCCCEEECCCCc-CCccCHH-HHhCC
Confidence 479999999999 5777543222 245899999999999987432 2233 78899999999964 7643322 23446
Q ss_pred Cccccccccccc
Q 006794 599 KTLVGLNLQNCN 610 (631)
Q Consensus 599 ~~L~~L~l~~c~ 610 (631)
++|+.|++++++
T Consensus 159 ~~L~~L~l~~N~ 170 (229)
T 3e6j_A 159 SSLTHAYLFGNP 170 (229)
T ss_dssp TTCCEEECTTSC
T ss_pred CCCCEEEeeCCC
Confidence 789999999954
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=1.7e-06 Score=84.34 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=70.6
Q ss_pred CCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCC
Q 006794 468 QLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCM 547 (631)
Q Consensus 468 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 547 (631)
+++.+.+.+ .+....+..+...|+ +|+.|+++++ .++..+-..+. .+++|+.|++.+ +++..+-..+ .+|+
T Consensus 203 ~~~~l~~~~--~l~~~~~~~l~~~~~-~L~~l~L~~n-~i~~I~~~aF~--~~~~L~~l~l~~--ni~~I~~~aF-~~~~ 273 (329)
T 3sb4_A 203 DINFLTIEG--KLDNADFKLIRDYMP-NLVSLDISKT-NATTIPDFTFA--QKKYLLKIKLPH--NLKTIGQRVF-SNCG 273 (329)
T ss_dssp GCSEEEEEE--CCCHHHHHHHHHHCT-TCCEEECTTB-CCCEECTTTTT--TCTTCCEEECCT--TCCEECTTTT-TTCT
T ss_pred ccceEEEee--eecHHHHHHHHHhcC-CCeEEECCCC-CcceecHhhhh--CCCCCCEEECCc--ccceehHHHh-hCCh
Confidence 344444443 233344444444565 8999999873 34433322222 478899999877 2544332223 4588
Q ss_pred cCC-EEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCccccc
Q 006794 548 FLS-YLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGL 604 (631)
Q Consensus 548 ~L~-~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L 604 (631)
+|+ .+.+.+ .++..+-..+. .|++|+.|+++++ .++...-.. ...|++|+.|
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~--~c~~L~~l~l~~n-~i~~I~~~a-F~~~~~L~~l 326 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFM--GCDNLRYVLATGD-KITTLGDEL-FGNGVPSKLI 326 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTT--TCTTEEEEEECSS-CCCEECTTT-TCTTCCCCEE
T ss_pred hccEEEEEcc-cceEEchhhhh--CCccCCEEEeCCC-ccCccchhh-hcCCcchhhh
Confidence 998 999987 55543333344 7889999998763 354333222 2345566665
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.07 E-value=3.9e-07 Score=80.94 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=67.9
Q ss_pred CCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcC
Q 006794 467 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 546 (631)
Q Consensus 467 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 546 (631)
++|+.|++++ +.++.- ...+...+ +|+.|+++++ .++......+. .+++|++|++++ +.++......+ ..+
T Consensus 31 ~~l~~L~L~~-n~i~~i--p~~~~~l~-~L~~L~Ls~N-~i~~i~~~~f~--~l~~L~~L~Ls~-N~l~~i~~~~f-~~l 101 (193)
T 2wfh_A 31 RDVTELYLDG-NQFTLV--PKELSNYK-HLTLIDLSNN-RISTLSNQSFS--NMTQLLTLILSY-NRLRCIPPRTF-DGL 101 (193)
T ss_dssp TTCCEEECCS-SCCCSC--CGGGGGCT-TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCCBCCTTTT-TTC
T ss_pred CCCCEEECCC-CcCchh--HHHhhccc-CCCEEECCCC-cCCEeCHhHcc--CCCCCCEEECCC-CccCEeCHHHh-CCC
Confidence 5788888887 444421 12233333 7888888773 45443322222 467788888877 56665433223 347
Q ss_pred CcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHH
Q 006794 547 MFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPA 593 (631)
Q Consensus 547 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~ 593 (631)
++|+.|+|++|.++......+. .+++|+.|++++++-..+..+.+
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 102 KSLRLLSLHGNDISVVPEGAFN--DLSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECCSSCEECSGGGHH
T ss_pred CCCCEEECCCCCCCeeChhhhh--cCccccEEEeCCCCeecCCcCHH
Confidence 7888888888877653333333 56678888888766433333333
No 137
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.06 E-value=8.4e-07 Score=80.87 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=35.0
Q ss_pred CcCCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHHh
Q 006794 48 SIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLT 85 (631)
Q Consensus 48 ~i~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~ 85 (631)
.|+.||+||+.+||+||+ ++|+.++++|||+|+.++.
T Consensus 4 ~l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~ 40 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVR 40 (312)
T ss_dssp HHHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHT
T ss_pred hhHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999 9999999999999999874
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.02 E-value=2.6e-07 Score=82.08 Aligned_cols=128 Identities=16% Similarity=0.100 Sum_probs=78.9
Q ss_pred ceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCccc
Q 006794 444 RSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETL 523 (631)
Q Consensus 444 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L 523 (631)
+.++++++. ++... . ...++|+.|++++ +.++.......+...+ +|++|+++++ .++......+. .+++|
T Consensus 11 ~~l~~s~~~-l~~ip-~---~~~~~l~~L~l~~-n~i~~~~~~~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~--~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIP-R---DIPLHTTELLLND-NELGRISSDGLFGRLP-HLVKLELKRN-QLTGIEPNAFE--GASHI 80 (192)
T ss_dssp TEEECTTSC-CSSCC-S---CCCTTCSEEECCS-CCCCSBCCSCSGGGCT-TCCEEECCSS-CCCCBCTTTTT--TCTTC
T ss_pred CEEEcCCCC-cCcCc-c---CCCCCCCEEECCC-CcCCccCCccccccCC-CCCEEECCCC-CCCCcCHhHcC--CcccC
Confidence 677887764 22111 0 1234889999988 4444322111223333 8899999884 55543222232 47888
Q ss_pred CeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCC
Q 006794 524 ELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSE 585 (631)
Q Consensus 524 ~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~ 585 (631)
++|++++ +.++......+ ..+++|+.|+|++|.++......+. .+++|++|++++++-
T Consensus 81 ~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 81 QELQLGE-NKIKEISNKMF-LGLHQLKTLNLYDNQISCVMPGSFE--HLNSLTSLNLASNPF 138 (192)
T ss_dssp CEEECCS-CCCCEECSSSS-TTCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECTTCCB
T ss_pred CEEECCC-CcCCccCHHHh-cCCCCCCEEECCCCcCCeeCHHHhh--cCCCCCEEEeCCCCc
Confidence 9999988 57765443222 3478899999998887765444444 677888999988763
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.00 E-value=2.8e-06 Score=75.32 Aligned_cols=110 Identities=20% Similarity=0.121 Sum_probs=71.5
Q ss_pred CCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhc
Q 006794 440 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLH 519 (631)
Q Consensus 440 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 519 (631)
.++|++|+++++. ++... .....+++|+.|++++ +.++..... .+...+ +|++|+++++ .++......+. .
T Consensus 30 ~~~l~~L~L~~n~-i~~ip--~~~~~l~~L~~L~Ls~-N~i~~i~~~-~f~~l~-~L~~L~Ls~N-~l~~i~~~~f~--~ 100 (193)
T 2wfh_A 30 PRDVTELYLDGNQ-FTLVP--KELSNYKHLTLIDLSN-NRISTLSNQ-SFSNMT-QLLTLILSYN-RLRCIPPRTFD--G 100 (193)
T ss_dssp CTTCCEEECCSSC-CCSCC--GGGGGCTTCCEEECCS-SCCCCCCTT-TTTTCT-TCCEEECCSS-CCCBCCTTTTT--T
T ss_pred CCCCCEEECCCCc-CchhH--HHhhcccCCCEEECCC-CcCCEeCHh-HccCCC-CCCEEECCCC-ccCEeCHHHhC--C
Confidence 4689999999875 33221 2334568999999998 445432211 122233 8999999884 56544333333 4
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccC
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAIT 560 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~ 560 (631)
+++|+.|+|++ +.++...... ...+++|+.|+|++|.+.
T Consensus 101 l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 101 LKSLRLLSLHG-NDISVVPEGA-FNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CTTCCEEECCS-SCCCBCCTTT-TTTCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCC-CCCCeeChhh-hhcCccccEEEeCCCCee
Confidence 78999999998 5776533222 234889999999999865
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.99 E-value=1.8e-06 Score=76.61 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=82.0
Q ss_pred cEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCc
Q 006794 417 KSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGL 496 (631)
Q Consensus 417 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L 496 (631)
+.++++++ .+..++. ...++|++|+++++. ++..........+++|+.|++++ +.++..... .+...+ +|
T Consensus 11 ~~l~~s~~-~l~~ip~-----~~~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~-~L 80 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPR-----DIPLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKR-NQLTGIEPN-AFEGAS-HI 80 (192)
T ss_dssp TEEECTTS-CCSSCCS-----CCCTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTT-TTTTCT-TC
T ss_pred CEEEcCCC-CcCcCcc-----CCCCCCCEEECCCCc-CCccCCccccccCCCCCEEECCC-CCCCCcCHh-HcCCcc-cC
Confidence 55666663 2333322 124489999999985 33222111234569999999998 455432111 122233 89
Q ss_pred cEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh
Q 006794 497 VKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 561 (631)
Q Consensus 497 ~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~ 561 (631)
++|+++++ .++......+. .+++|++|++++ +.++......+ ..+++|+.|+|++|.++.
T Consensus 81 ~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 81 QELQLGEN-KIKEISNKMFL--GLHQLKTLNLYD-NQISCVMPGSF-EHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CEEECCSC-CCCEECSSSST--TCTTCCEEECCS-SCCCEECTTSS-TTCTTCCEEECTTCCBCC
T ss_pred CEEECCCC-cCCccCHHHhc--CCCCCCEEECCC-CcCCeeCHHHh-hcCCCCCEEEeCCCCccC
Confidence 99999984 66554332222 479999999999 68875433333 348999999999998764
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.97 E-value=1.6e-06 Score=77.50 Aligned_cols=39 Identities=18% Similarity=0.067 Sum_probs=16.0
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCcc
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAI 559 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l 559 (631)
+++|+.|++++ +.+++.........+++|+.|++++|.+
T Consensus 114 l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 114 LVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 34455555544 2443322111112244555555555443
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=5.7e-06 Score=80.59 Aligned_cols=80 Identities=11% Similarity=0.146 Sum_probs=44.8
Q ss_pred CCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCC--CCchhhHHHHHhcccCCCcEEecccccCCCccccccccC
Q 006794 360 CLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECN--RVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPML 437 (631)
Q Consensus 360 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 437 (631)
..+++.+.+.+. +.......+...|++|++|++.++. .+....+.. +++|+.+++.++ +..++ ...+
T Consensus 201 ~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~-----~~~L~~l~l~~n--i~~I~--~~aF 269 (329)
T 3sb4_A 201 PRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQ-----KKYLLKIKLPHN--LKTIG--QRVF 269 (329)
T ss_dssp GGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTT-----CTTCCEEECCTT--CCEEC--TTTT
T ss_pred ccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhC-----CCCCCEEECCcc--cceeh--HHHh
Confidence 356677777663 5556666666668888888887642 222222222 266777777663 33322 2224
Q ss_pred CCCCCCc-eEeccC
Q 006794 438 SPNCSLR-SLSIRN 450 (631)
Q Consensus 438 ~~~~~L~-~L~l~~ 450 (631)
..+++|+ .+.+.+
T Consensus 270 ~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 270 SNCGRLAGTLELPA 283 (329)
T ss_dssp TTCTTCCEEEEECT
T ss_pred hCChhccEEEEEcc
Confidence 4566666 666654
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.94 E-value=1.3e-06 Score=76.48 Aligned_cols=127 Identities=11% Similarity=0.086 Sum_probs=69.1
Q ss_pred CceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcc
Q 006794 443 LRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSET 522 (631)
Q Consensus 443 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~ 522 (631)
.+.++++++. +.... ....++|+.|++++ +.++... ...+...+ +|++|+++++ .++......+. .+++
T Consensus 9 ~~~l~~~~~~-l~~~p----~~~~~~l~~L~l~~-n~l~~~~-~~~~~~l~-~L~~L~l~~n-~l~~~~~~~~~--~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVP----TGIPSSATRLELES-NKLQSLP-HGVFDKLT-QLTKLSLSQN-QIQSLPDGVFD--KLTK 77 (177)
T ss_dssp TTEEECCSSC-CSSCC----TTCCTTCSEEECCS-SCCCCCC-TTTTTTCT-TCSEEECCSS-CCCCCCTTTTT--TCTT
T ss_pred CCEEEecCCC-CccCC----CCCCCCCcEEEeCC-CcccEeC-HHHhcCcc-cccEEECCCC-cceEeChhHcc--CCCc
Confidence 4566666654 22111 11236788888887 3443211 11112223 7888888774 44432222122 3677
Q ss_pred cCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 523 LELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 523 L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
|+.|++++ +.++...... ...+++|+.|++++|.++......+. .+++|++|++++|+
T Consensus 78 L~~L~l~~-N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 78 LTILYLHE-NKLQSLPNGV-FDKLTQLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTNP 135 (177)
T ss_dssp CCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred cCEEECCC-CCccccCHHH-hhCCcccCEEECcCCcceEeCHHHhc--CCcccCEEEecCCC
Confidence 88888877 4665432221 23477788888888776643332222 56677888887765
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.87 E-value=3.5e-06 Score=75.24 Aligned_cols=125 Identities=24% Similarity=0.168 Sum_probs=81.8
Q ss_pred cCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHh
Q 006794 465 LCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGN 544 (631)
Q Consensus 465 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 544 (631)
.+++|+.|+++++ .++. +. .+..++ +|+.|+++++ .++.. ..... .+++|+.|++++| .++... .+.
T Consensus 46 ~l~~L~~L~ls~n-~l~~--l~-~~~~l~-~L~~L~l~~n-~l~~l--~~~~~-~~~~L~~L~L~~N-~l~~l~--~~~- 112 (198)
T 1ds9_A 46 TLKACKHLALSTN-NIEK--IS-SLSGME-NLRILSLGRN-LIKKI--ENLDA-VADTLEELWISYN-QIASLS--GIE- 112 (198)
T ss_dssp HTTTCSEEECSEE-EESC--CC-CHHHHT-TCCEEEEEEE-EECSC--SSHHH-HHHHCSEEEEEEE-ECCCHH--HHH-
T ss_pred cCCCCCEEECCCC-CCcc--cc-ccccCC-CCCEEECCCC-Ccccc--cchhh-cCCcCCEEECcCC-cCCcCC--ccc-
Confidence 4578888888773 3333 11 222333 7888888774 33321 11222 3589999999994 777643 343
Q ss_pred cCCcCCEEEecCCccChhhH-HhhhhccCCCccEEeccCCCCCCcch---------HHHHHHhcCcccccc
Q 006794 545 NCMFLSYLDVSKCAITDMGI-SALSHAEQLNLQVLSLSSCSEVSNKS---------MPALKKLGKTLVGLN 605 (631)
Q Consensus 545 ~~~~L~~L~L~~~~l~~~~~-~~l~~~~~~~L~~L~l~~c~~l~~~~---------~~~l~~~~~~L~~L~ 605 (631)
.+++|+.|++++|.+++... ..+. .+++|++|++++|+ ++... ...+...+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~--~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLA--ALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHT--TTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCcCCchhHHHHHh--cCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 48999999999999987443 4444 78899999999975 53321 122345678899987
No 145
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.87 E-value=3.8e-07 Score=89.83 Aligned_cols=207 Identities=13% Similarity=0.061 Sum_probs=120.5
Q ss_pred CCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcC
Q 006794 387 GSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLC 466 (631)
Q Consensus 387 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 466 (631)
+++++|+++++. ++.... .....+++|++|+|++|...+.+.. ..+..+++++++.+.++..+...... ....+
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~--~~f~~l~~L~~L~Ls~N~i~~~i~~--~~f~~L~~l~~~l~~~~N~l~~l~~~-~f~~l 103 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQK--GAFSGFGDLEKIEISQNDVLEVIEA--DVFSNLPKLHEIRIEKANNLLYINPE-AFQNL 103 (350)
T ss_dssp TTCSEEEEESCC-CSEECT--TSSTTCTTCCEEEEECCTTCCEECT--TSBCSCTTCCEEEEEEETTCCEECTT-SBCCC
T ss_pred CCCCEEEccCCc-CCCcCH--HHHcCCCCCCEEECcCCCCCCccCh--hHhhcchhhhhhhcccCCcccccCch-hhhhc
Confidence 679999999864 432211 0112238999999999875554422 22456777777655544444322111 22356
Q ss_pred CCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcC
Q 006794 467 PQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNC 546 (631)
Q Consensus 467 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 546 (631)
++|+.|+++++ .+....-..... . ..+..|++.++..+.......+.. ....++.|++++ +.++...... ...
T Consensus 104 ~~L~~L~l~~n-~l~~~~~~~~~~-~-~~l~~l~l~~~~~i~~l~~~~f~~-~~~~l~~L~L~~-N~i~~i~~~~--f~~ 176 (350)
T 4ay9_X 104 PNLQYLLISNT-GIKHLPDVHKIH-S-LQKVLLDIQDNINIHTIERNSFVG-LSFESVILWLNK-NGIQEIHNSA--FNG 176 (350)
T ss_dssp TTCCEEEEEEE-CCSSCCCCTTCC-B-SSCEEEEEESCTTCCEECTTSSTT-SBSSCEEEECCS-SCCCEECTTS--STT
T ss_pred ccccccccccc-ccccCCchhhcc-c-chhhhhhhccccccccccccchhh-cchhhhhhcccc-ccccCCChhh--ccc
Confidence 89999999984 443211111111 1 167788887766665433222222 224688899988 6776432211 235
Q ss_pred CcCCEEEecCC-ccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCcccccccccccCCC
Q 006794 547 MFLSYLDVSKC-AITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSIN 613 (631)
Q Consensus 547 ~~L~~L~L~~~-~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~ 613 (631)
++|++|++.++ .++......+. .+++|+.|+++++. ++.... ....+|+.|.+.+|++++
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~--~l~~L~~LdLs~N~-l~~lp~----~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFH--GASGPVILDISRTR-IHSLPS----YGLENLKKLRARSTYNLK 237 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTT--TEECCSEEECTTSC-CCCCCS----SSCTTCCEEECTTCTTCC
T ss_pred cchhHHhhccCCcccCCCHHHhc--cCcccchhhcCCCC-cCccCh----hhhccchHhhhccCCCcC
Confidence 78999999864 45443322233 67799999999964 754321 234567777776666554
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.74 E-value=9.1e-06 Score=71.01 Aligned_cols=112 Identities=14% Similarity=0.053 Sum_probs=66.2
Q ss_pred CCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhc
Q 006794 440 NCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLH 519 (631)
Q Consensus 440 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 519 (631)
.++|++|+++++. +.... ......+++|+.|++++ +.++.... ..+...+ +|+.|+++++ .++......+. .
T Consensus 27 ~~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~-n~l~~~~~-~~~~~l~-~L~~L~l~~N-~l~~~~~~~~~--~ 98 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLP-HGVFDKLTQLTKLSLSQ-NQIQSLPD-GVFDKLT-KLTILYLHEN-KLQSLPNGVFD--K 98 (177)
T ss_dssp CTTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCS-SCCCCCCT-TTTTTCT-TCCEEECCSS-CCCCCCTTTTT--T
T ss_pred CCCCcEEEeCCCc-ccEeC-HHHhcCcccccEEECCC-CcceEeCh-hHccCCC-ccCEEECCCC-CccccCHHHhh--C
Confidence 4688888888875 32211 11223458888888887 34442111 1122233 7888888874 55533222122 4
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 561 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~ 561 (631)
+++|+.|++++ +.++.... .....+++|+.|++++|.++.
T Consensus 99 l~~L~~L~l~~-N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 99 LTQLKELALDT-NQLKSVPD-GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CTTCCEEECCS-SCCSCCCT-TTTTTCTTCCEEECCSSCBCC
T ss_pred CcccCEEECcC-CcceEeCH-HHhcCCcccCEEEecCCCeec
Confidence 68888888888 46664332 222447888888888887664
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.67 E-value=2.2e-05 Score=82.03 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=49.9
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHH-HHHHHhcCCcCCEEEecCCccChhh--HHhhhhcc
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDAS-LVAIGNNCMFLSYLDVSKCAITDMG--ISALSHAE 571 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~-~~~l~~~~~~L~~L~L~~~~l~~~~--~~~l~~~~ 571 (631)
+|+.|+|+++ .++.. ..+. .+++|+.|+|++ +.++... ...+ ..+++|+.|+|++|.++... ...+. ..
T Consensus 487 ~L~~L~Ls~N-~l~~l--p~l~--~l~~L~~L~Ls~-N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~-~~ 558 (567)
T 1dce_A 487 CLEVLQASDN-ALENV--DGVA--NLPRLQELLLCN-NRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLA-EM 558 (567)
T ss_dssp TCCEEECCSS-CCCCC--GGGT--TCSSCCEEECCS-SCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHH-HH
T ss_pred CCCEEECCCC-CCCCC--cccC--CCCCCcEEECCC-CCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccHHHHHH-HH
Confidence 6666666663 44432 2222 478899999988 5776553 3333 34899999999999876532 22233 35
Q ss_pred CCCccEEec
Q 006794 572 QLNLQVLSL 580 (631)
Q Consensus 572 ~~~L~~L~l 580 (631)
+|+|+.|++
T Consensus 559 lp~L~~L~l 567 (567)
T 1dce_A 559 LPSVSSILT 567 (567)
T ss_dssp CTTCSEEEC
T ss_pred CcccCccCC
Confidence 788888864
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.56 E-value=1.5e-05 Score=86.27 Aligned_cols=12 Identities=0% Similarity=-0.164 Sum_probs=1.3
Q ss_pred cCcccccccccc
Q 006794 598 GKTLVGLNLQNC 609 (631)
Q Consensus 598 ~~~L~~L~l~~c 609 (631)
+..|+.|+++.+
T Consensus 358 p~~l~~l~l~~n 369 (727)
T 4b8c_D 358 PHERRFIEINTD 369 (727)
T ss_dssp CCC---------
T ss_pred ccccceeEeecc
Confidence 345667777663
No 149
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.55 E-value=1.7e-05 Score=81.50 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=39.2
Q ss_pred ccCCCCCcCCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHHhh
Q 006794 42 EFENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTS 86 (631)
Q Consensus 42 ~~~~~~~i~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 86 (631)
+.-..|.|..||+||+.+||+||+ .+++.++++|||+|++++..
T Consensus 8 ~~~~~d~~~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 8 DNLKRDLITSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp -CCCCCHHHHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred cccccCChHHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcC
Confidence 344668899999999999999999 99999999999999998753
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.41 E-value=2.3e-05 Score=67.78 Aligned_cols=104 Identities=16% Similarity=0.101 Sum_probs=67.7
Q ss_pred CCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCC
Q 006794 468 QLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCM 547 (631)
Q Consensus 468 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 547 (631)
..+.+++++ ..++.-. ...++.|+.|++++ +.++......+. .+++|++|+|++ ++++...... ...++
T Consensus 10 ~~~~l~~s~-n~l~~ip-----~~~~~~l~~L~L~~-N~i~~~~~~~~~--~l~~L~~L~Ls~-N~l~~l~~~~-f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCSG-KSLASVP-----TGIPTTTQVLYLYD-NQITKLEPGVFD--RLTQLTRLDLDN-NQLTVLPAGV-FDKLT 78 (170)
T ss_dssp ETTEEECTT-SCCSSCC-----SCCCTTCSEEECCS-SCCCCCCTTTTT--TCTTCSEEECCS-SCCCCCCTTT-TTTCT
T ss_pred CCCEEEeCC-CCcCccC-----ccCCCCCcEEEcCC-CcCCccChhhhc--CcccCCEEECCC-CCcCccChhh-ccCCC
Confidence 356788877 3333211 11124899999988 455544333233 478999999998 5776543222 24588
Q ss_pred cCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 548 FLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 548 ~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
+|+.|+|++|.++......+. .+++|+.|++++++
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFD--NLKSLTHIWLLNNP 113 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC
T ss_pred CCCEEECCCCccCEeCHHHhc--CCCCCCEEEeCCCC
Confidence 999999999987764333333 67799999999976
No 151
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.38 E-value=6.5e-05 Score=76.58 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=39.1
Q ss_pred ccCCCCCcCCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHHh
Q 006794 42 EFENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLT 85 (631)
Q Consensus 42 ~~~~~~~i~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~ 85 (631)
+....|.+..||+|++.+||+||+ .+|+.++++|||+|+.++.
T Consensus 12 ~~~~~d~~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 12 PQFQRDFISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCCCSTTTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHT
T ss_pred ccccCChhHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcC
Confidence 344678899999999999999999 9999999999999999874
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.36 E-value=2.5e-05 Score=67.51 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=63.7
Q ss_pred CCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCc
Q 006794 442 SLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSE 521 (631)
Q Consensus 442 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 521 (631)
..+.++++++. ++... ....++|+.|++++ +.++...- ..+...+ +|++|+++++ .++......+. .++
T Consensus 10 ~~~~l~~s~n~-l~~ip----~~~~~~l~~L~L~~-N~i~~~~~-~~~~~l~-~L~~L~Ls~N-~l~~l~~~~f~--~l~ 78 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVP----TGIPTTTQVLYLYD-NQITKLEP-GVFDRLT-QLTRLDLDNN-QLTVLPAGVFD--KLT 78 (170)
T ss_dssp ETTEEECTTSC-CSSCC----SCCCTTCSEEECCS-SCCCCCCT-TTTTTCT-TCSEEECCSS-CCCCCCTTTTT--TCT
T ss_pred CCCEEEeCCCC-cCccC----ccCCCCCcEEEcCC-CcCCccCh-hhhcCcc-cCCEEECCCC-CcCccChhhcc--CCC
Confidence 34678887764 22111 01237889999988 44442211 1112223 8899999884 56543322222 478
Q ss_pred ccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccCh
Q 006794 522 TLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITD 561 (631)
Q Consensus 522 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~ 561 (631)
+|++|+|++ +.++...... ...+++|+.|+|++|.++.
T Consensus 79 ~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 79 QLTQLSLND-NQLKSIPRGA-FDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSCBCT
T ss_pred CCCEEECCC-CccCEeCHHH-hcCCCCCCEEEeCCCCCCC
Confidence 899999988 5776533222 2358889999999988754
No 153
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.33 E-value=4.1e-05 Score=77.86 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=38.4
Q ss_pred cCCCCCcCCCCHH----HHHHHhccCCCcccchhhhhhhHHHHHHHh
Q 006794 43 FENQPSIDVLPDE----CLYEIFRRLPSGKERSFAACVSKKWLMMLT 85 (631)
Q Consensus 43 ~~~~~~i~~LP~e----il~~If~~L~~~~d~~~~~~Vcr~W~~~~~ 85 (631)
.-..|.+..||+| |+.+||+||+ .+++.++++|||+|++++.
T Consensus 5 ~~~~d~~~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 5 MLQRDFITALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp CSCCCHHHHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHHH
T ss_pred hhhcChHHHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhc
Confidence 3456889999999 9999999999 9999999999999999874
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.28 E-value=0.00051 Score=63.41 Aligned_cols=84 Identities=18% Similarity=0.213 Sum_probs=59.1
Q ss_pred cCcccCeecccCCCCCChH-HHHHHHhcCCcCCEEEecCCccChh-hHHhhhhccCCCccEEeccCCCCCCc------ch
Q 006794 519 HSETLELLNLDGCRKITDA-SLVAIGNNCMFLSYLDVSKCAITDM-GISALSHAEQLNLQVLSLSSCSEVSN------KS 590 (631)
Q Consensus 519 ~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~~~L~~L~l~~c~~l~~------~~ 590 (631)
.+++|+.|+|++ |.++.. ++..+...+++|+.|+|++|.+++. .+..+. .+ +|++|++++|+ ++. ..
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~--~l-~L~~L~L~~Np-l~~~~~~~~~y 242 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK--GL-KLEELWLDGNS-LCDTFRDQSTY 242 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT--TS-CCSEEECTTST-TGGGCSSHHHH
T ss_pred hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc--cC-CcceEEccCCc-CccccCcchhH
Confidence 588999999998 677652 2333445699999999999998874 333333 33 89999999977 553 22
Q ss_pred HHHHHHhcCcccccccc
Q 006794 591 MPALKKLGKTLVGLNLQ 607 (631)
Q Consensus 591 ~~~l~~~~~~L~~L~l~ 607 (631)
...+...+|+|+.||=.
T Consensus 243 ~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHCTTCCEESSC
T ss_pred HHHHHHHCcccCeECCc
Confidence 33466678888888643
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.23 E-value=7.1e-05 Score=64.89 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=35.2
Q ss_pred CcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 520 SETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
+++|+.|+|++ ++++..... ....+++|+.|+|++|.++......+. .+++|+.|++++++
T Consensus 56 l~~L~~L~Ls~-N~l~~i~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~--~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 56 LVNLQQLYFNS-NKLTAIPTG-VFDKLTQLTQLDLNDNHLKSIPRGAFD--NLKSLTHIYLYNNP 116 (174)
T ss_dssp CTTCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSC
T ss_pred CcCCCEEECCC-CCCCccChh-HhCCcchhhEEECCCCccceeCHHHhc--cccCCCEEEeCCCC
Confidence 56666777666 455542211 123467777777777776643222233 56677777777755
No 156
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.17 E-value=8.7e-05 Score=80.24 Aligned_cols=130 Identities=20% Similarity=0.244 Sum_probs=73.6
Q ss_pred hcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHH
Q 006794 464 KLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIG 543 (631)
Q Consensus 464 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 543 (631)
..+++|+.|+|+++ .+.. +..-+..++ +|++|+|+++ .++... ..+. .+++|+.|+|++ +.++.. ...+
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~--l~~~~~~l~-~L~~L~Ls~N-~l~~lp-~~~~--~l~~L~~L~Ls~-N~l~~l-p~~~- 289 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFN--ISANIFKYD-FLTRLYLNGN-SLTELP-AEIK--NLSNLRVLDLSH-NRLTSL-PAEL- 289 (727)
T ss_dssp -CCCCCCEEECTTS-CCSC--CCGGGGGCC-SCSCCBCTTS-CCSCCC-GGGG--GGTTCCEEECTT-SCCSSC-CSSG-
T ss_pred ccCCCCcEEECCCC-CCCC--CChhhcCCC-CCCEEEeeCC-cCcccC-hhhh--CCCCCCEEeCcC-CcCCcc-Chhh-
Confidence 34588888888874 3331 111111233 7888888874 555221 2222 478888888888 466632 1222
Q ss_pred hcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCccccccccc
Q 006794 544 NNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQN 608 (631)
Q Consensus 544 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~ 608 (631)
..+++|+.|+|++|.++... ..+. .+++|+.|+|++|. ++......+......+..+++++
T Consensus 290 ~~l~~L~~L~L~~N~l~~lp-~~~~--~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~ 350 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVTTLP-WEFG--NLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRD 350 (727)
T ss_dssp GGGTTCSEEECCSSCCCCCC-SSTT--SCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEECCCCCCCccC-hhhh--cCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhcc
Confidence 44788888888888776422 2233 67788888888865 65444433333222222344554
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.13 E-value=0.00011 Score=63.68 Aligned_cols=86 Identities=16% Similarity=0.121 Sum_probs=59.0
Q ss_pred cccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCc
Q 006794 521 ETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKT 600 (631)
Q Consensus 521 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 600 (631)
++|+.|++++ +.++......+ ..+++|+.|+|++|.++......+. .+++|+.|++++|. ++.... ......++
T Consensus 33 ~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~i~~~~~~--~l~~L~~L~L~~N~-l~~l~~-~~~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNN-NQITKLEPGVF-DHLVNLQQLYFNSNKLTAIPTGVFD--KLTQLTQLDLNDNH-LKSIPR-GAFDNLKS 106 (174)
T ss_dssp TTCSEEECCS-SCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred CCCcEEEeCC-CCccccCHHHh-cCCcCCCEEECCCCCCCccChhHhC--CcchhhEEECCCCc-cceeCH-HHhccccC
Confidence 5677777777 56654322222 3589999999999998864333333 67899999999964 764322 22344678
Q ss_pred ccccccccccCCC
Q 006794 601 LVGLNLQNCNSIN 613 (631)
Q Consensus 601 L~~L~l~~c~~l~ 613 (631)
|+.|+++++ .+.
T Consensus 107 L~~L~L~~N-~~~ 118 (174)
T 2r9u_A 107 LTHIYLYNN-PWD 118 (174)
T ss_dssp CSEEECCSS-CBC
T ss_pred CCEEEeCCC-Ccc
Confidence 999999994 444
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.09 E-value=1.9e-05 Score=78.98 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=30.0
Q ss_pred cCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccC
Q 006794 519 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSS 582 (631)
Q Consensus 519 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~ 582 (631)
.+.+|+.+.|.. .++..+-..+ .+|++|+.+.+..+ ++..+-..+. .|++|+.+++..
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~lp~~-l~~I~~~aF~--~C~~L~~i~lp~ 375 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINFPLS-LRKIGANAFQ--GCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECCCTT-CCEECTTTBT--TCTTCCEEEEEG
T ss_pred CCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEECcc-ccEehHHHhh--CCCCCCEEEECC
Confidence 356677776653 2332221122 34777777777554 3332222222 666777777755
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.58 E-value=0.00048 Score=67.41 Aligned_cols=94 Identities=18% Similarity=0.096 Sum_probs=60.1
Q ss_pred CccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCC
Q 006794 495 GLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLN 574 (631)
Q Consensus 495 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~ 574 (631)
+|+.|+|++.+.++......+. .+++|+.|+|++ +.++......+ ..+++|+.|+|++|.++......+. .+ .
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~-N~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~--~~-~ 104 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLR--GLGELRNLTIVK-SGLRFVAPDAF-HFTPRLSRLNLSFNALESLSWKTVQ--GL-S 104 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCS-SCCCEECTTGG-GSCSCCCEEECCSSCCSCCCSTTTC--SC-C
T ss_pred CeeEEEccCCCCCCCcChhHhc--cccCCCEEECCC-CccceeCHHHh-cCCcCCCEEeCCCCccceeCHHHcc--cC-C
Confidence 6899999864566654333333 478899999988 57775443333 4588999999999987754332222 23 3
Q ss_pred ccEEeccCCCCCCcchHHHHH
Q 006794 575 LQVLSLSSCSEVSNKSMPALK 595 (631)
Q Consensus 575 L~~L~l~~c~~l~~~~~~~l~ 595 (631)
|+.|++.+++.-.+..+.++.
T Consensus 105 L~~l~l~~N~~~c~c~l~~~~ 125 (347)
T 2ifg_A 105 LQELVLSGNPLHCSCALRWLQ 125 (347)
T ss_dssp CCEEECCSSCCCCCGGGHHHH
T ss_pred ceEEEeeCCCccCCCccHHHH
Confidence 889999886633344444433
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.41 E-value=0.001 Score=65.11 Aligned_cols=89 Identities=15% Similarity=0.041 Sum_probs=57.7
Q ss_pred cCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHh
Q 006794 465 LCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGN 544 (631)
Q Consensus 465 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 544 (631)
.+++|+.|+|++.+.++.-.-. .+...+ +|+.|+|+++ .++......+. .+++|+.|+|++ +.++..... +..
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~-~~~~l~-~L~~L~l~~N-~l~~~~~~~~~--~l~~L~~L~l~~-N~l~~~~~~-~~~ 101 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELR-DLRGLG-ELRNLTIVKS-GLRFVAPDAFH--FTPRLSRLNLSF-NALESLSWK-TVQ 101 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGG-GSCSCC-CCSEEECCSS-CCCEECTTGGG--SCSCCCEEECCS-SCCSCCCST-TTC
T ss_pred CCCCeeEEEccCCCCCCCcChh-Hhcccc-CCCEEECCCC-ccceeCHHHhc--CCcCCCEEeCCC-CccceeCHH-Hcc
Confidence 4578999999864555432211 122233 8999999984 67654433333 589999999999 677643321 223
Q ss_pred cCCcCCEEEecCCccCh
Q 006794 545 NCMFLSYLDVSKCAITD 561 (631)
Q Consensus 545 ~~~~L~~L~L~~~~l~~ 561 (631)
.++ |+.|+|.+|.+..
T Consensus 102 ~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCC-CCEEECCSSCCCC
T ss_pred cCC-ceEEEeeCCCccC
Confidence 234 9999999998763
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.15 E-value=0.01 Score=54.60 Aligned_cols=58 Identities=26% Similarity=0.251 Sum_probs=30.6
Q ss_pred CcccCeecccCCCCCChH-HHHHHHhcCCcCCEEEecCCccChh------hHHhhhhccCCCccEEecc
Q 006794 520 SETLELLNLDGCRKITDA-SLVAIGNNCMFLSYLDVSKCAITDM------GISALSHAEQLNLQVLSLS 581 (631)
Q Consensus 520 ~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~L~~~~l~~~------~~~~l~~~~~~~L~~L~l~ 581 (631)
+++|+.|+|++ |.+++. .+..+. .+ +|++|+|++|.+... ....+. ..+|+|+.|+-.
T Consensus 195 l~~L~~L~Ls~-N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~~~il-~~~P~L~~LDg~ 259 (267)
T 3rw6_A 195 APNLKILNLSG-NELKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQSTYISAIR-ERFPKLLRLDGH 259 (267)
T ss_dssp STTCCEEECTT-SCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSHHHHHHHHH-HHCTTCCEESSC
T ss_pred CCCCCEEECCC-CccCCchhhhhcc-cC-CcceEEccCCcCccccCcchhHHHHHH-HHCcccCeECCc
Confidence 55666666655 455543 111111 13 777778877776541 111222 367777777643
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.99 E-value=0.00081 Score=66.90 Aligned_cols=189 Identities=12% Similarity=0.193 Sum_probs=108.5
Q ss_pred CcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCC--CCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCC
Q 006794 362 NLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECN--RVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSP 439 (631)
Q Consensus 362 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 439 (631)
+|+.+.+.. .+...+- ..+..|++|+.+++.++. .+....+. ..+|+.+.+... +..+. ...+..
T Consensus 158 ~L~~i~lp~--~l~~I~~-~aF~~c~~L~~l~l~~n~l~~I~~~aF~------~~~L~~l~lp~~--l~~I~--~~aF~~ 224 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKE-DIFYYCYNLKKADLSKTKITKLPASTFV------YAGIEEVLLPVT--LKEIG--SQAFLK 224 (401)
T ss_dssp CCCEEECCT--TCCEECS-STTTTCTTCCEEECTTSCCSEECTTTTT------TCCCSEEECCTT--CCEEC--TTTTTT
T ss_pred CceEEEeCC--CccEehH-HHhhCcccCCeeecCCCcceEechhhEe------ecccCEEEeCCc--hheeh--hhHhhC
Confidence 688888865 2222111 123468999999997632 22222222 278888888742 33332 233567
Q ss_pred CCCCceEeccCC-CCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCC-------CchHH
Q 006794 440 NCSLRSLSIRNC-PGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLN-------LTDEV 511 (631)
Q Consensus 440 ~~~L~~L~l~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~-------l~~~~ 511 (631)
+++|+.+.+..+ ..+... .+. . .+|+.+.+.+ .++.-+- ..+..|. +|+.+.+.+... +...+
T Consensus 225 ~~~L~~l~l~~~l~~I~~~---aF~-~-~~L~~i~lp~--~i~~I~~-~aF~~c~-~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 225 TSQLKTIEIPENVSTIGQE---AFR-E-SGITTVKLPN--GVTNIAS-RAFYYCP-ELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp CTTCCCEECCTTCCEECTT---TTT-T-CCCSEEEEET--TCCEECT-TTTTTCT-TCCEEEEESSCCCCCTTCEECTTT
T ss_pred CCCCCEEecCCCccCcccc---ccc-c-CCccEEEeCC--CccEECh-hHhhCCC-CCCEEEeCCccccCCcccEECHHH
Confidence 889999998753 112221 121 2 5788888854 3322111 1233455 899998866321 22222
Q ss_pred HHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 512 VLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 512 ~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
+. .+++|+.+.+.+ .++..+-..+ .+|++|+.+.|..+ ++..+-..+. .| +|+.+.+.++.
T Consensus 296 F~-----~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~~-l~~I~~~aF~--~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 296 LE-----GCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPAN-VTQINFSAFN--NT-GIKEVKVEGTT 356 (401)
T ss_dssp TT-----TCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECTT-CCEECTTSSS--SS-CCCEEEECCSS
T ss_pred hh-----CCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECcc-ccEEcHHhCC--CC-CCCEEEEcCCC
Confidence 22 578899998875 3544332223 45899999999554 4443333333 67 89999998853
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.51 E-value=0.0023 Score=63.62 Aligned_cols=197 Identities=17% Similarity=0.203 Sum_probs=113.7
Q ss_pred hhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCC-CCCchhhHHHHHhcccCCCcEEecccccCCCccccccc
Q 006794 357 GKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEEC-NRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMP 435 (631)
Q Consensus 357 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 435 (631)
+..|++|+.+.+..+ .+...+-..+ .+.+|+.+.+... ..+....+.. +++|+.+.+... +..+...
T Consensus 176 F~~c~~L~~l~l~~n-~l~~I~~~aF--~~~~L~~l~lp~~l~~I~~~aF~~-----~~~L~~l~l~~~--l~~I~~~-- 243 (401)
T 4fdw_A 176 FYYCYNLKKADLSKT-KITKLPASTF--VYAGIEEVLLPVTLKEIGSQAFLK-----TSQLKTIEIPEN--VSTIGQE-- 243 (401)
T ss_dssp TTTCTTCCEEECTTS-CCSEECTTTT--TTCCCSEEECCTTCCEECTTTTTT-----CTTCCCEECCTT--CCEECTT--
T ss_pred hhCcccCCeeecCCC-cceEechhhE--eecccCEEEeCCchheehhhHhhC-----CCCCCEEecCCC--ccCcccc--
Confidence 356899999999763 2322111122 2589999998743 2223333322 278999999762 3333222
Q ss_pred cCCCCCCCceEeccCCC-CCCHHHHHHHhhcCCCCcEEecccccCCCch----hhHHHHhhcccCccEEecCCCCCCchH
Q 006794 436 MLSPNCSLRSLSIRNCP-GFGNASLAMLGKLCPQLQHVDLSGLYGITDV----GIFPLLESCKAGLVKVNLSGCLNLTDE 510 (631)
Q Consensus 436 ~~~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~----~~~~l~~~~~~~L~~L~l~~c~~l~~~ 510 (631)
.+.. .+|+.+.+.+.- .+.. .....|++|+.+.+.+. .+... --...+..|+ +|+.+.+.+ .++..
T Consensus 244 aF~~-~~L~~i~lp~~i~~I~~----~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~-~L~~l~l~~--~i~~I 314 (401)
T 4fdw_A 244 AFRE-SGITTVKLPNGVTNIAS----RAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCP-KLARFEIPE--SIRIL 314 (401)
T ss_dssp TTTT-CCCSEEEEETTCCEECT----TTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCT-TCCEECCCT--TCCEE
T ss_pred cccc-CCccEEEeCCCccEECh----hHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCc-cCCeEEeCC--ceEEE
Confidence 2233 689999986531 1221 12346799999999873 22111 0112344566 899999975 34433
Q ss_pred HHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCC-CccEEeccC
Q 006794 511 VVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQL-NLQVLSLSS 582 (631)
Q Consensus 511 ~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~-~L~~L~l~~ 582 (631)
+-.++. .+.+|+.+.|.. .++..+-..+ .+| +|+.+.+.++.+....-..+. .++ .+..|.+..
T Consensus 315 ~~~aF~--~c~~L~~l~lp~--~l~~I~~~aF-~~~-~L~~l~l~~n~~~~l~~~~F~--~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 315 GQGLLG--GNRKVTQLTIPA--NVTQINFSAF-NNT-GIKEVKVEGTTPPQVFEKVWY--GFPDDITVIRVPA 379 (401)
T ss_dssp CTTTTT--TCCSCCEEEECT--TCCEECTTSS-SSS-CCCEEEECCSSCCBCCCSSCC--CSCTTCCEEEECG
T ss_pred hhhhhc--CCCCccEEEECc--cccEEcHHhC-CCC-CCCEEEEcCCCCccccccccc--CCCCCccEEEeCH
Confidence 323222 479999999965 4544332233 347 999999999875442222222 443 677787766
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.48 E-value=0.003 Score=62.88 Aligned_cols=81 Identities=14% Similarity=0.127 Sum_probs=50.0
Q ss_pred cCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhc
Q 006794 519 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLG 598 (631)
Q Consensus 519 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 598 (631)
.+.+|+.+.+.. .++..+-.. ...|++|+.+.|..+ ++..+-..+. .|.+|+.+++... ++...-.. -..|
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~~-v~~I~~~aF~--~c~~L~~i~lp~~--l~~I~~~a-F~~C 365 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEA-FESCTSLVSIDLPYL-VEEIGKRSFR--GCTSLSNINFPLS--LRKIGANA-FQGC 365 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTT-TTTCTTCCEECCCTT-CCEECTTTTT--TCTTCCEECCCTT--CCEECTTT-BTTC
T ss_pred cccccccccccc--ccceechhh-hcCCCCCCEEEeCCc-ccEEhHHhcc--CCCCCCEEEECcc--ccEehHHH-hhCC
Confidence 467888888765 333222222 245999999999654 4433333333 7889999999762 44322222 3457
Q ss_pred Cccccccccc
Q 006794 599 KTLVGLNLQN 608 (631)
Q Consensus 599 ~~L~~L~l~~ 608 (631)
++|+.+++..
T Consensus 366 ~~L~~i~lp~ 375 (394)
T 4fs7_A 366 INLKKVELPK 375 (394)
T ss_dssp TTCCEEEEEG
T ss_pred CCCCEEEECC
Confidence 8899988865
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.90 E-value=2 Score=34.36 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=14.4
Q ss_pred cCCEEEecCCccChhhHHhhhhccCCCccEEeccCCC
Q 006794 548 FLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCS 584 (631)
Q Consensus 548 ~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 584 (631)
+|+.|+|++|.|+......+. .+++|+.|+|.+++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLD--ALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhh--hccccCEEEecCCC
Confidence 344444444444332222222 33444455554444
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=73.51 E-value=0.8 Score=44.82 Aligned_cols=128 Identities=18% Similarity=0.280 Sum_probs=62.4
Q ss_pred CCCCCCceEeccCCC-CCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHH
Q 006794 438 SPNCSLRSLSIRNCP-GFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALA 516 (631)
Q Consensus 438 ~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 516 (631)
..+.+|+.+.+...- .+.. .....+.+|+.+.+.. .++.-+-. .+..|. .|+.+.+.. .++..+...+.
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~----~~f~~~~~L~~i~lp~--~v~~I~~~-aF~~~~-~l~~i~l~~--~i~~i~~~aF~ 283 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGD----GAFYGMKALDEIAIPK--NVTSIGSF-LLQNCT-ALKTLNFYA--KVKTVPYLLCS 283 (379)
T ss_dssp TTCSSCSEEECCTTCCEECT----TTTTTCSSCCEEEECT--TCCEECTT-TTTTCT-TCCEEEECC--CCSEECTTTTT
T ss_pred ccccccceeeeccceeEEcc----ccccCCccceEEEcCC--CccEeCcc-ccceee-hhccccccc--cceeccccccc
Confidence 456777777775431 1111 1122457788887754 22221111 122333 677777754 23222211111
Q ss_pred hhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccC
Q 006794 517 RLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSS 582 (631)
Q Consensus 517 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~ 582 (631)
.+.+|+.+.+.+ ..++..+-..+ .+|.+|+.+.|..+ ++..+-..+. .|.+|+.+.+..
T Consensus 284 --~c~~L~~i~l~~-~~i~~I~~~aF-~~c~~L~~i~lp~~-l~~I~~~aF~--~C~~L~~i~ip~ 342 (379)
T 4h09_A 284 --GCSNLTKVVMDN-SAIETLEPRVF-MDCVKLSSVTLPTA-LKTIQVYAFK--NCKALSTISYPK 342 (379)
T ss_dssp --TCTTCCEEEECC-TTCCEECTTTT-TTCTTCCEEECCTT-CCEECTTTTT--TCTTCCCCCCCT
T ss_pred --cccccccccccc-cccceehhhhh-cCCCCCCEEEcCcc-ccEEHHHHhh--CCCCCCEEEECC
Confidence 467777777765 23432221122 34777888877543 3322222222 666777777754
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=71.31 E-value=1.3 Score=43.49 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=17.0
Q ss_pred cCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccC
Q 006794 545 NCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSS 582 (631)
Q Consensus 545 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~ 582 (631)
+|.+|+.+.|..+ ++..+-..+. .|.+|+.+++.+
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~--~C~~L~~i~~~~ 366 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFS--NCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGT--TCTTCCEEEESS
T ss_pred CCCCCCEEEECcc-cCEEhHhHhh--CCCCCCEEEECC
Confidence 3666666666432 2222222222 555666666655
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=68.75 E-value=0.92 Score=44.69 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=49.0
Q ss_pred cCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhc
Q 006794 519 HSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLG 598 (631)
Q Consensus 519 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 598 (631)
.+++|+.+.+.. .++..+-.. ..+|.+|+.+.|..+ ++..+-..+ ..|.+|+.+.+.. .++...-.. -..|
T Consensus 286 ~c~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~~-v~~I~~~aF--~~C~~L~~i~ip~--sv~~I~~~a-F~~C 356 (394)
T 4gt6_A 286 NCPALQDIEFSS--RITELPESV-FAGCISLKSIDIPEG-ITQILDDAF--AGCEQLERIAIPS--SVTKIPESA-FSNC 356 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEECCTT-CCEECTTTT--TTCTTCCEEEECT--TCCBCCGGG-GTTC
T ss_pred cccccccccCCC--cccccCcee-ecCCCCcCEEEeCCc-ccEehHhHh--hCCCCCCEEEECc--ccCEEhHhH-hhCC
Confidence 467777777754 333222122 245899999999754 333222223 3788999999965 244322222 3457
Q ss_pred Cccccccccc
Q 006794 599 KTLVGLNLQN 608 (631)
Q Consensus 599 ~~L~~L~l~~ 608 (631)
.+|+.+++.+
T Consensus 357 ~~L~~i~~~~ 366 (394)
T 4gt6_A 357 TALNNIEYSG 366 (394)
T ss_dssp TTCCEEEESS
T ss_pred CCCCEEEECC
Confidence 8899998876
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=58.61 E-value=3.3 Score=32.98 Aligned_cols=37 Identities=14% Similarity=-0.021 Sum_probs=21.4
Q ss_pred ccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccC
Q 006794 522 TLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAIT 560 (631)
Q Consensus 522 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~ 560 (631)
+|+.|+|++ |+++...... ...+++|+.|+|.+|.+.
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~-f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGL-LDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTT-GGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCC-CcCCccChhh-hhhccccCEEEecCCCee
Confidence 566666666 4554433222 234677777888777653
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=57.08 E-value=2.2 Score=41.57 Aligned_cols=107 Identities=19% Similarity=0.281 Sum_probs=56.6
Q ss_pred CCCCCCCceEeccCCC-CCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHH
Q 006794 437 LSPNCSLRSLSIRNCP-GFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLAL 515 (631)
Q Consensus 437 ~~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l 515 (631)
...+..|+.+.+...- .+.+ .....+.+|+.+.+.. .+..-+. ..+..|. +|+.+.+.+. .++..+-.++
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~----~aF~~~~~l~~i~l~~--~i~~i~~-~aF~~c~-~L~~i~l~~~-~i~~I~~~aF 306 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGS----FLLQNCTALKTLNFYA--KVKTVPY-LLCSGCS-NLTKVVMDNS-AIETLEPRVF 306 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECT----TTTTTCTTCCEEEECC--CCSEECT-TTTTTCT-TCCEEEECCT-TCCEECTTTT
T ss_pred ccCCccceEEEcCCCccEeCc----cccceeehhccccccc--cceeccc-ccccccc-cccccccccc-ccceehhhhh
Confidence 3467788888875431 1211 1223467788888754 2322211 1233454 7888888652 2322111112
Q ss_pred HhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCC
Q 006794 516 ARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKC 557 (631)
Q Consensus 516 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~ 557 (631)
. .+.+|+.+.|.. .++..+-..+ .+|++|+.+.+..+
T Consensus 307 ~--~c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 307 M--DCVKLSSVTLPT--ALKTIQVYAF-KNCKALSTISYPKS 343 (379)
T ss_dssp T--TCTTCCEEECCT--TCCEECTTTT-TTCTTCCCCCCCTT
T ss_pred c--CCCCCCEEEcCc--cccEEHHHHh-hCCCCCCEEEECCc
Confidence 2 478888888864 3333222222 35888888887543
Done!