Query 006795
Match_columns 630
No_of_seqs 162 out of 1115
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 14:36:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4176 Uncharacterized conser 100.0 8.1E-42 1.8E-46 356.1 19.1 301 45-421 7-308 (323)
2 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 4.2E-31 9.2E-36 252.5 11.3 178 222-415 1-194 (194)
3 PRK15401 alpha-ketoglutarate-d 100.0 5.3E-28 1.2E-32 240.6 19.1 184 217-417 14-213 (213)
4 KOG3200 Uncharacterized conser 99.9 2.5E-26 5.4E-31 221.1 13.0 181 211-418 2-215 (224)
5 TIGR00568 alkb DNA alkylation 99.9 4.4E-24 9.5E-29 206.0 16.1 161 226-402 1-169 (169)
6 COG3145 AlkB Alkylated DNA rep 99.9 2.3E-21 5E-26 190.7 13.7 175 216-412 10-194 (194)
7 KOG3959 2-Oxoglutarate- and ir 99.8 3.8E-20 8.3E-25 185.2 4.3 182 219-429 70-289 (306)
8 PRK05467 Fe(II)-dependent oxyg 97.7 0.00085 1.9E-08 68.5 14.3 150 223-414 2-174 (226)
9 smart00702 P4Hc Prolyl 4-hydro 97.6 0.0023 5E-08 61.2 15.1 161 221-415 1-176 (178)
10 PF03171 2OG-FeII_Oxy: 2OG-Fe( 97.5 6.4E-05 1.4E-09 65.0 3.2 82 323-416 1-96 (98)
11 KOG2731 DNA alkylation damage 97.1 0.00052 1.1E-08 73.8 4.4 117 276-403 170-292 (378)
12 PF13640 2OG-FeII_Oxy_3: 2OG-F 95.5 0.0077 1.7E-07 52.2 1.9 81 326-414 1-97 (100)
13 TIGR01762 chlorin-enz chlorina 93.6 1.3 2.7E-05 46.8 13.4 41 377-421 208-251 (288)
14 PLN00052 prolyl 4-hydroxylase; 93.4 1.4 3E-05 47.4 13.5 168 217-414 50-248 (310)
15 COG3128 PiuC Uncharacterized i 92.9 0.67 1.5E-05 46.9 9.4 83 327-414 85-177 (229)
16 PF12933 FTO_NTD: FTO catalyti 92.7 0.32 7E-06 50.6 7.1 41 376-416 210-250 (253)
17 KOG1924 RhoA GTPase effector D 88.7 2.1 4.7E-05 50.9 9.6 9 12-20 116-124 (1102)
18 PF09859 Oxygenase-NA: Oxygena 83.1 4.3 9.3E-05 40.4 7.2 109 300-413 41-167 (173)
19 PF13759 2OG-FeII_Oxy_5: Putat 78.6 3.8 8.3E-05 36.2 4.8 84 326-414 2-100 (101)
20 PF12851 Tet_JBP: Oxygenase do 67.4 6.9 0.00015 38.5 4.1 82 321-414 74-167 (171)
21 TIGR02466 conserved hypothetic 63.7 25 0.00054 35.7 7.3 88 322-414 94-196 (201)
22 KOG1591 Prolyl 4-hydroxylase a 57.2 60 0.0013 34.9 9.1 177 206-413 82-279 (289)
23 KOG4849 mRNA cleavage factor I 45.3 1.4E+02 0.003 33.5 9.5 10 536-545 318-327 (498)
24 KOG1830 Wiskott Aldrich syndro 38.9 3.8E+02 0.0082 30.9 11.8 32 48-91 49-80 (518)
25 KOG3671 Actin regulatory prote 35.0 1.3E+02 0.0028 35.0 7.7 77 464-551 381-465 (569)
26 COG3826 Uncharacterized protei 34.9 1.1E+02 0.0025 31.4 6.6 103 300-407 103-222 (236)
27 COG5285 Protein involved in bi 32.5 62 0.0013 35.1 4.6 54 377-435 192-247 (299)
28 PLN02904 oxidoreductase 30.1 1.4E+02 0.0031 32.6 7.0 80 325-417 209-304 (357)
29 PLN02947 oxidoreductase 28.6 1.6E+02 0.0035 32.5 7.1 80 325-418 226-322 (374)
30 PF05721 PhyH: Phytanoyl-CoA d 24.8 85 0.0018 29.3 3.6 25 221-245 4-28 (211)
31 PLN02912 oxidoreductase, 2OG-F 23.9 1.8E+02 0.0039 31.7 6.4 80 324-417 197-293 (348)
32 PF08007 Cupin_4: Cupin superf 23.1 1.3E+02 0.0028 32.3 5.0 83 324-415 112-208 (319)
33 KOG0132 RNA polymerase II C-te 22.8 5E+02 0.011 32.0 9.9 41 432-472 601-641 (894)
34 PRK08304 stage V sporulation p 22.4 39 0.00085 37.1 1.0 28 25-52 205-233 (337)
35 PLN03001 oxidoreductase, 2OG-F 22.2 2.1E+02 0.0045 30.0 6.2 78 326-417 118-212 (262)
36 PF07451 SpoVAD: Stage V sporu 21.7 40 0.00087 36.9 0.9 28 25-52 200-228 (329)
37 PLN02299 1-aminocyclopropane-1 21.6 2.1E+02 0.0045 30.9 6.2 79 325-417 159-255 (321)
38 PRK12404 stage V sporulation p 21.0 43 0.00093 36.8 0.9 28 25-52 203-231 (334)
39 PLN02997 flavonol synthase 20.8 2.6E+02 0.0055 30.3 6.7 79 325-417 184-279 (325)
40 PLN02515 naringenin,2-oxogluta 20.1 3.2E+02 0.0069 30.0 7.3 82 324-417 195-293 (358)
41 TIGR02845 spore_V_AD stage V s 20.1 47 0.001 36.4 1.0 28 25-52 199-227 (327)
No 1
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.1e-42 Score=356.13 Aligned_cols=301 Identities=34% Similarity=0.491 Sum_probs=254.2
Q ss_pred CchhHHHHHHhhhccccchhhhccccchHHHHHHHHHHHHHHhhccccCCCCCCCcccccccccccccccccccccccCC
Q 006795 45 GEYDFAINCIQQRRCNWNSVLHLQQYFSVSEVMLALQQVAWRKQQRSFDHHHHHHHQQQHHLNRTKRSAFVKKDFHNNNN 124 (630)
Q Consensus 45 ~eyd~v~~~~~~rr~~w~~vl~mq~~~sv~dv~~~Lqqv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (630)
-||+.|...|||||+||.+++.|+.+.+.+.|+.++|.++-+....... +.+
T Consensus 7 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~------------------------~~~---- 58 (323)
T KOG4176|consen 7 YEYAKVAKKIHRRRLNSSDVLVQSSRESTSYLAVANQGLAAGLAEAALL------------------------VDA---- 58 (323)
T ss_pred ccHHHHHHHHHhhhcccCCcceecccCCcHHHHhhccchhhhhhhhhhh------------------------ccc----
Confidence 6899999999999999999999999999999999999998774221100 000
Q ss_pred CCCCcCCCCCCCCCCcccccccccCCCCcccCCCccccccCCCCcccccccCCCCCCCCcCCcchhhchhcccccccccc
Q 006795 125 NNNHAFDSNSSAFDDKKDVVMKAHDDGSAKSLGNSEITQVGDAEPKAEALDDGCTPGLKENDSQSVQSQNEKQNQSMAAK 204 (630)
Q Consensus 125 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~k 204 (630)
++ +..++.++..|++. .....|+ .+-.+.+..+.+-....|
T Consensus 59 ------------------------~~----~~~~~~~~~~~s~~----~~~~~~~-------~e~~~~~~~~~~~~~~i~ 99 (323)
T KOG4176|consen 59 ------------------------ED----GEVDSGIMSPGSED----SLFRELY-------SEESRLRYRTDANLKAIK 99 (323)
T ss_pred ------------------------cc----cccccccccCCccc----chhhhhc-------hhhhhhhhhhhccccccc
Confidence 00 11122223333321 0111222 222222233456678999
Q ss_pred ceeeecccCCcccccCCceEEecCCCCHHHHHHHHHHHHhhhhcCCceeecCceEEecCCcccCCCceeEecCCcccCCC
Q 006795 205 SFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGP 284 (630)
Q Consensus 205 ~f~~~E~vdg~~VNvVpGL~l~pdFLS~eEe~kLLs~I~EL~~sgRR~qlyG~ty~v~Rr~~kg~gReviq~G~~Y~Ys~ 284 (630)
.|.+.|.++++.+|+++|++++.+.+++.|...|.+++.++..+++++.+.+.++.. |++|++|+++|||++|.|.+
T Consensus 100 ~f~~~e~~~~~~~n~~~~~~l~~~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~~---~~~gk~R~~iq~G~~f~y~~ 176 (323)
T KOG4176|consen 100 GFGEQEQLKGQSVNVVEGLKLRDEVFIPGELSLIVDFVTELEEKGLIGALVDETFTY---QESGKHREVIQLGYPFDYRT 176 (323)
T ss_pred cccceeeccchhhhhhhhheeeccccChhhceehhhhhhhhHHhhhhccccccccee---eccccceeeeecCceeccCC
Confidence 999999999999999999999999999999999999999999999999999988887 78899999999999999998
Q ss_pred CCcccCCCCCCCCCCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCCCEEEEEc-Cceeeeee
Q 006795 285 PEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFL-TECDMTFG 363 (630)
Q Consensus 285 ~e~~n~~gi~~~~~vePIP~~Lq~LidRLv~~~ll~~~PNqcLIN~Y~pGdgI~PHvD~p~FG~PIvsLSL-SecvM~Fg 363 (630)
...++.+ ..+|||..++.|++||+.+++++.+||+|+||+|++|++|.||+|+++|++||++||| |+|+|.|+
T Consensus 177 ~~~d~~~------~~~piPs~~~~ii~rlv~~~~ip~~pd~~~iN~Ye~G~~i~ph~~~~~F~~Pi~slS~lSe~~m~Fg 250 (323)
T KOG4176|consen 177 NNVDESK------PVDPIPSLFKSIIDRLVSWRVIPERPDQCTINFYEPGDGIPPHIDHSAFLDPISSLSFLSECTMEFG 250 (323)
T ss_pred CcccccC------ccCCCchHHHHHHHHhhhhccCCCCCCeeEEEeeCCCCCCCCCCChHHhcCceEEEEeecceeEEec
Confidence 7665542 2799999999999999999999999999999999999999999999999999999987 99999999
Q ss_pred eccCCCCCCCCcceEEEEecCCcEEEecccccccccccccCCCCCeEEEEeeeccCCC
Q 006795 364 RMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKSQPKK 421 (630)
Q Consensus 364 r~~~~d~~gd~~~~~~L~Lp~GSLLVMsGeAR~~WkHgIpk~r~rRISLTFRrV~p~~ 421 (630)
|.+..++.+++++.+.++|..||+|||.|.+.+..+|+++..+..|||||||++++..
T Consensus 251 ~~~~~~~~~~~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~~~~~kRisitfrki~~~~ 308 (323)
T KOG4176|consen 251 HGLLSDNIGNFRGSLSLPLRYGSVLVIRGRSADVAPHCIRPSRNKRISITFRKIRPDP 308 (323)
T ss_pred ccccccCccccccccccccccCeEEEeCCCcccccccccCCCCCceEEEEEEEeccCC
Confidence 9999888999999999999999999999999999999999999999999999999976
No 2
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=99.97 E-value=4.2e-31 Score=252.49 Aligned_cols=178 Identities=22% Similarity=0.385 Sum_probs=122.6
Q ss_pred ceEEecCCCCHHHHHHHHHHHHh-hhhcCCceeecCceEEecCCcccCCCceeEecCCcccCCCCCcccCCCCCCCCCCC
Q 006795 222 GLKLYEEVSGNSEVSKLVSLVND-LRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIE 300 (630)
Q Consensus 222 GL~l~pdFLS~eEe~kLLs~I~E-L~~sgRR~qlyG~ty~v~Rr~~kg~gReviq~G~~Y~Ys~~e~~n~~gi~~~~~ve 300 (630)
||+|++|||+.+|+++|++.|.+ ..|...... .++.+...+.++++. .....|..|.|.... ......+.
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~y~y~~~~------~~~~~~~~ 71 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYP-MGKVYSLPRKLCGGL--SWVGDGPSYRYSGKR------PVRSKPWP 71 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCC-CCCECCECCE-SSEE--EEEECT--CCCTCC-------EECCCEBS
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEc-CCCEEccceecceee--EEECCCCCeEcCCcc------ccCCCCCC
Confidence 89999999999999999999984 444433333 366666554433211 112234667775221 01345778
Q ss_pred CCcHHHHHHHHHHHhCcc--CCCCCCEEEEeccCCCCCCCCCCCCCCC--CCCEEEEEc-CceeeeeeeccCCCCCCCCc
Q 006795 301 PIPSLLQDVIDRLVGLQI--MTVKPDSCIVDVFNEGDHSQPHISPSWF--GRPVCILFL-TECDMTFGRMIGIDHPGDYR 375 (630)
Q Consensus 301 PIP~~Lq~LidRLv~~~l--l~~~PNqcLIN~Y~pGdgI~PHvD~p~F--G~PIvsLSL-SecvM~Fgr~~~~d~~gd~~ 375 (630)
+||++|..+++++.+... ....||+||||+|.+|++|++|+|..++ +.+|++||| ++|+|.|++... ..
T Consensus 72 ~~p~~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~------~~ 145 (194)
T PF13532_consen 72 PFPEWLSRLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSD------DD 145 (194)
T ss_dssp CCHHHHHHHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC-CCSEEEEEEEES-EEEEEEECGG------TS
T ss_pred CccHHHHHHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccccCCCcEEEEEEccCceEEEeeccC------CC
Confidence 999999999999976443 2489999999999999999999988755 889999999 999999987532 23
Q ss_pred ceEEEEecCCcEEEecccccccccccccCCCC----------CeEEEEee
Q 006795 376 GTLRLSVAPGSLLVMQGKSADIAKHAISSIRK----------QRILVTFT 415 (630)
Q Consensus 376 ~~~~L~Lp~GSLLVMsGeAR~~WkHgIpk~r~----------rRISLTFR 415 (630)
+.++|.|++||||||+|++|+.| |+|++... .|||||||
T Consensus 146 ~~~~~~L~~gsl~vm~g~~r~~~-H~I~~~~~~~~~~~~~~~~RislTfR 194 (194)
T PF13532_consen 146 EPIEVPLPPGSLLVMSGEARYDW-HGIPPVKKDTHPSHYVRGRRISLTFR 194 (194)
T ss_dssp -EEEEEE-TTEEEEEETTHHHHE-EEE-S-SCEEEESTEE-S-EEEEEEE
T ss_pred ccEEEEcCCCCEEEeChHHhhhe-eEcccccCCccccccCCCCEEEEEeC
Confidence 68999999999999999999999 99999554 89999999
No 3
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=99.96 E-value=5.3e-28 Score=240.61 Aligned_cols=184 Identities=17% Similarity=0.238 Sum_probs=136.5
Q ss_pred cccCCceEEecCCCCHHHHHHHHHHHHhhhhc--CCceeecCceEEecCCcccCCC--ceeEecCCcccCCCCCcccCCC
Q 006795 217 VNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTA--GKRGQIQGPAYVVSKRPIRGHG--REVIQLGLPIVDGPPEDEIAGG 292 (630)
Q Consensus 217 VNvVpGL~l~pdFLS~eEe~kLLs~I~EL~~s--gRR~qlyG~ty~v~Rr~~kg~g--Reviq~G~~Y~Ys~~e~~n~~g 292 (630)
..+.+|..++++|. .+++++|++.|.++... -++..++|......+ |..+| .++.+- ..|.|+..+.
T Consensus 14 ~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~~~~gg~~msv~--mt~~G~~~W~~d~-~~YrYs~~~~----- 84 (213)
T PRK15401 14 EPLAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHMVTPGGYTMSVA--MTNCGALGWVTDR-RGYRYSPIDP----- 84 (213)
T ss_pred eecCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccceecCCCCcceeE--EeccccceEecCC-CCcccCCcCC-----
Confidence 44668999999995 99999999998874321 144666664333333 23333 233322 4677763211
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhC-ccCCCCCCEEEEeccCCCCCCCCCCCC--CCCCCCEEEEEc-CceeeeeeeccCC
Q 006795 293 TSRDRRIEPIPSLLQDVIDRLVGL-QIMTVKPDSCIVDVFNEGDHSQPHISP--SWFGRPVCILFL-TECDMTFGRMIGI 368 (630)
Q Consensus 293 i~~~~~vePIP~~Lq~LidRLv~~-~ll~~~PNqcLIN~Y~pGdgI~PHvD~--p~FG~PIvsLSL-SecvM~Fgr~~~~ 368 (630)
.....+.+||++|..|.+++... +.....||+||||+|++|++|+||+|. ..|+.||++||| .+|+|.|++...
T Consensus 85 -~~~~pwp~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~~- 162 (213)
T PRK15401 85 -LTGKPWPAMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLKR- 162 (213)
T ss_pred -CCCCCCCCchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCcccCCCCEEEEeCCCCeEEEecccCC-
Confidence 12446788888999999998543 334579999999999999999999974 457889999999 899999987532
Q ss_pred CCCCCCcceEEEEecCCcEEEecccccccccccccCCC--------CCeEEEEeeec
Q 006795 369 DHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIR--------KQRILVTFTKS 417 (630)
Q Consensus 369 d~~gd~~~~~~L~Lp~GSLLVMsGeAR~~WkHgIpk~r--------~rRISLTFRrV 417 (630)
...+.+|.|++||||||+|++|+ |.|+|++++ ..|||||||++
T Consensus 163 -----~~~~~~l~L~~Gdllvm~G~sr~-~~HgVp~~~~~~~p~~g~~RINLTFR~~ 213 (213)
T PRK15401 163 -----SDPLQRILLEHGDVVVWGGPSRL-RYHGILPLKAGEHPLTGECRINLTFRKA 213 (213)
T ss_pred -----CCceEEEEeCCCCEEEECchHhh-eeccCCcCCCCcCCCCCCCeEEEEeEcC
Confidence 12468999999999999999997 669999954 37999999985
No 4
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=2.5e-26 Score=221.06 Aligned_cols=181 Identities=18% Similarity=0.216 Sum_probs=143.6
Q ss_pred ccCCcccccCCceEEecCCCCHHHHHHHHHHHHhhhhcCCceeecCceEEecCCcccCCCceeEecCCcccCCCCCcccC
Q 006795 211 MVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIA 290 (630)
Q Consensus 211 ~vdg~~VNvVpGL~l~pdFLS~eEe~kLLs~I~EL~~sgRR~qlyG~ty~v~Rr~~kg~gReviq~G~~Y~Ys~~e~~n~ 290 (630)
.+++..|..-|-..||++||+++|+..+++.|...+. .+|.....|++..||.-..-
T Consensus 2 ~~~~F~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~---------------pkW~~L~NRRLqNyGGvvh~-------- 58 (224)
T KOG3200|consen 2 NIKKFIVKSAPTMIYIPNFITEEEENLYLSHIENAPQ---------------PKWRVLANRRLQNYGGVVHK-------- 58 (224)
T ss_pred CcceeEecccceEEEcCCccChHHHHHHHHHHhcCCC---------------chhHHHHhhhhhhcCCcccc--------
Confidence 4566667777889999999999999999999986541 11222233444455421111
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCCCEEEEEc-CceeeeeeeccCCC
Q 006795 291 GGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFL-TECDMTFGRMIGID 369 (630)
Q Consensus 291 ~gi~~~~~vePIP~~Lq~LidRLv~~~ll~~~PNqcLIN~Y~pGdgI~PHvD~p~FG~PIvsLSL-SecvM~Fgr~~~~d 369 (630)
..+.++.+|+||+.+.+++-..+++....|++|||+|.+|+||+||.|+|.|.+.|.+||| |.|+|+|......+
T Consensus 59 ----~glipeelP~wLq~~v~kinnlglF~s~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vldf~~p~r~e 134 (224)
T KOG3200|consen 59 ----TGLIPEELPPWLQYYVDKINNLGLFKSPANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVLDFYDPVRQE 134 (224)
T ss_pred ----CCcCccccCHHHHHHHHHhhcccccCCCcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEEecccccccc
Confidence 2456799999999999999888999899999999999999999999999999988888999 99999998643322
Q ss_pred CCC-----C--CcceEEEEecCCcEEEecccccccccccccC-------------------------CCCCeEEEEeeec
Q 006795 370 HPG-----D--YRGTLRLSVAPGSLLVMQGKSADIAKHAISS-------------------------IRKQRILVTFTKS 417 (630)
Q Consensus 370 ~~g-----d--~~~~~~L~Lp~GSLLVMsGeAR~~WkHgIpk-------------------------~r~rRISLTFRrV 417 (630)
... + .+..+.|.|+++||||+.|+++.++.|+|.. .++.|||||.|.|
T Consensus 135 ~~d~te~~dqp~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sna~ac~s~k~Gd~lvr~tRvSLTiR~V 214 (224)
T KOG3200|consen 135 VNDGTESKDQPLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSNALACSSRKDGDKLVRQTRVSLTIRLV 214 (224)
T ss_pred cCCccccCCCCccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhhhhhccccCCcceeeecceeEEEEecc
Confidence 111 1 2346899999999999999999999999987 4789999999987
Q ss_pred c
Q 006795 418 Q 418 (630)
Q Consensus 418 ~ 418 (630)
-
T Consensus 215 P 215 (224)
T KOG3200|consen 215 P 215 (224)
T ss_pred h
Confidence 4
No 5
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=99.91 E-value=4.4e-24 Score=205.97 Aligned_cols=161 Identities=18% Similarity=0.238 Sum_probs=125.8
Q ss_pred ecCCCCHHHHHHHHHHHHh----hhhcCCceeecCceEEecCCcccCCCceeEecCCcccCCCCCcccCCCCCCCCCCCC
Q 006795 226 YEEVSGNSEVSKLVSLVND----LRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEP 301 (630)
Q Consensus 226 ~pdFLS~eEe~kLLs~I~E----L~~sgRR~qlyG~ty~v~Rr~~kg~gReviq~G~~Y~Ys~~e~~n~~gi~~~~~veP 301 (630)
+++|+...++..|++.+.+ ..|++ .+.+||+++.++|... ++-|+..+ |+.|+|+..... ....+.+
T Consensus 1 l~~~~~~~~~~~l~~~~~~~~~~~~w~~-~~~~~gk~~~~pr~~~-~~l~W~~~-g~~Y~ys~~~~~------~~~~~p~ 71 (169)
T TIGR00568 1 LKRYFAFNAQEQLIRDINDVASQDPFRQ-YVTPGGYTMSVAMTNL-GKLGWTTH-GQGYLYSPKDPQ------TNKPWPA 71 (169)
T ss_pred CCCccChHHHHHHHHHHHHHhhcCCCcC-eEecCCeEeeehhhhc-ccceEEcC-CCcccCCCcccC------CCCCCCC
Confidence 3688999999999998875 35666 4888999999998743 22234444 889999743211 1234566
Q ss_pred CcHHHHHHHHHHHhC-ccCCCCCCEEEEeccCCCCCCCCCCCCCCCC--CCEEEEEc-CceeeeeeeccCCCCCCCCcce
Q 006795 302 IPSLLQDVIDRLVGL-QIMTVKPDSCIVDVFNEGDHSQPHISPSWFG--RPVCILFL-TECDMTFGRMIGIDHPGDYRGT 377 (630)
Q Consensus 302 IP~~Lq~LidRLv~~-~ll~~~PNqcLIN~Y~pGdgI~PHvD~p~FG--~PIvsLSL-SecvM~Fgr~~~~d~~gd~~~~ 377 (630)
||++|..|.+++... ++....||+||||+|++|++|+||+|+++++ .||++||| ++|+|.|+++.. ...+
T Consensus 72 ~P~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~~------~~~~ 145 (169)
T TIGR00568 72 MPQDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKR------NDPP 145 (169)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCccccccccccccCCCCEEEEeCCCCEEEEecCCcC------CCce
Confidence 999999999998542 3344699999999999999999999977765 69999999 899999987632 1247
Q ss_pred EEEEecCCcEEEecccccccccccc
Q 006795 378 LRLSVAPGSLLVMQGKSADIAKHAI 402 (630)
Q Consensus 378 ~~L~Lp~GSLLVMsGeAR~~WkHgI 402 (630)
.+|.|++||||||+|++|+ +.|+|
T Consensus 146 ~~l~L~sGsllvM~G~sR~-~~Hgv 169 (169)
T TIGR00568 146 KRLRLHSGDVVIMGGESRL-AFHGV 169 (169)
T ss_pred EEEEeCCCCEEEECCchhc-cccCC
Confidence 8999999999999999997 77987
No 6
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.86 E-value=2.3e-21 Score=190.70 Aligned_cols=175 Identities=19% Similarity=0.122 Sum_probs=127.3
Q ss_pred ccccCCceEEecCCCCHHHHHHHHHHHH----hhhhcCCceeecCceEEecCCcccCCCceeEecCCcccCCCCCcccCC
Q 006795 216 MVNVVDGLKLYEEVSGNSEVSKLVSLVN----DLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAG 291 (630)
Q Consensus 216 ~VNvVpGL~l~pdFLS~eEe~kLLs~I~----EL~~sgRR~qlyG~ty~v~Rr~~kg~gReviq~G~~Y~Ys~~e~~n~~ 291 (630)
...+.+|+.++++|+ -.++.+|++.|. +.+|...+...+|+.+.+.+.. .++.+ -..|.|+..
T Consensus 10 ~~~~~~G~~~~~~~~-~~~~~~l~~~l~~~~~~~P~~~~~~~~~g~~~sV~r~~-----~W~~d-~~gy~y~~~------ 76 (194)
T COG3145 10 RRQLAPGAVILPGFL-LLTQGALVAALLFLLSQAPWFRPRRTPYGKPMSVPRLL-----GWVTD-RRGYRYSLR------ 76 (194)
T ss_pred cccCCCCeEEEeccc-ccchHHHHHHHHHhcccCcccceeecCCCcEeeeeecc-----ceecc-ccccccccc------
Confidence 445678999999999 556666666554 5678888899999999998731 11222 122444311
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCC--CEEEEEc-CceeeeeeeccCC
Q 006795 292 GTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGR--PVCILFL-TECDMTFGRMIGI 368 (630)
Q Consensus 292 gi~~~~~vePIP~~Lq~LidRLv~~~ll~~~PNqcLIN~Y~pGdgI~PHvD~p~FG~--PIvsLSL-SecvM~Fgr~~~~ 368 (630)
......+||.++....+...+.+.....|++||||+|++|+.|+||+|...++. +|++||| +.|+|.|++...
T Consensus 77 ---~p~~~~p~p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~~~~v~slSLg~~~~F~~~~~~r- 152 (194)
T COG3145 77 ---SPLTGKPWPPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRRR- 152 (194)
T ss_pred ---ccCCCCCCCccHHHHHHHHHHhcCCCCChhheeEEeccCCCccccccccccccCCCceEEEecCCCeEEEeccccC-
Confidence 122344555544443333344455568899999999999999999998766543 7999999 999999998642
Q ss_pred CCCCCCcceEEEEecCCcEEEecccccccccccccCC---CCCeEEE
Q 006795 369 DHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSI---RKQRILV 412 (630)
Q Consensus 369 d~~gd~~~~~~L~Lp~GSLLVMsGeAR~~WkHgIpk~---r~rRISL 412 (630)
.....++.|.+||||||.|.+|+.|.|.||+. ...||||
T Consensus 153 -----~~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~~~~~~~Rinl 194 (194)
T COG3145 153 -----RGPGLRLRLEHGDVVVMGGPSRLAWHHIIPKTSRLTGQRINL 194 (194)
T ss_pred -----CCCceeEEecCCCEEEecCCccccccccccccccCCcccccC
Confidence 23578999999999999999999999999993 3477775
No 7
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=99.79 E-value=3.8e-20 Score=185.20 Aligned_cols=182 Identities=21% Similarity=0.353 Sum_probs=139.3
Q ss_pred cCCceEEecCCCCHHHHHHHHHHHHhhhh----cCCceeecCceEEecCCcccCCCceeEecCCcccCCCCCcccCCCCC
Q 006795 219 VVDGLKLYEEVSGNSEVSKLVSLVNDLRT----AGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTS 294 (630)
Q Consensus 219 vVpGL~l~pdFLS~eEe~kLLs~I~EL~~----sgRR~qlyG~ty~v~Rr~~kg~gReviq~G~~Y~Ys~~e~~n~~gi~ 294 (630)
.+|||.+++||||.+|+.+|+..|+.++| +|||.|-||..++++++.+|
T Consensus 70 p~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klk--------------------------- 122 (306)
T KOG3959|consen 70 PIPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLK--------------------------- 122 (306)
T ss_pred ccCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhc---------------------------
Confidence 37999999999999999999999997655 79999999999999887543
Q ss_pred CCCCCCCCcHHHHHHHHHHHhCccCC--CCCCEEEEeccCC--CCCCCCCCCCCC-CCCCEEEE-EcCceeeeeeeccC-
Q 006795 295 RDRRIEPIPSLLQDVIDRLVGLQIMT--VKPDSCIVDVFNE--GDHSQPHISPSW-FGRPVCIL-FLTECDMTFGRMIG- 367 (630)
Q Consensus 295 ~~~~vePIP~~Lq~LidRLv~~~ll~--~~PNqcLIN~Y~p--GdgI~PHvD~p~-FG~PIvsL-SLSecvM~Fgr~~~- 367 (630)
...+-.+|.+-..+..||-+..++. ..+.+|.+. |.| |..|.||+|+.| +|..++++ .|++.++.+-.+.-
T Consensus 123 -t~~F~G~P~~~~~v~rrm~~yp~l~gfqp~EqCnLe-Yep~kgsaIdpH~DD~WiWGeRlv~~n~l~d~vl~lc~~e~~ 200 (306)
T KOG3959|consen 123 -TDTFVGMPEYADMVLRRMSEYPVLKGFQPFEQCNLE-YEPVKGSAIDPHQDDMWIWGERLVRSNRLFDFVLKLCSKECL 200 (306)
T ss_pred -cCcccCCchHHHHHHHHhhccchhhccCcHHHcCcc-cccccCCccCccccchhhhhhheeehhhccHHHHHhhhhhhh
Confidence 1135789999999999986655443 688999995 776 456899999987 58877765 33555444432110
Q ss_pred -----------CCCC---------CC----Ccc-eEEEEecCCcEEEecccccccccccccC--CCCCeEEEEeeeccCC
Q 006795 368 -----------IDHP---------GD----YRG-TLRLSVAPGSLLVMQGKSADIAKHAISS--IRKQRILVTFTKSQPK 420 (630)
Q Consensus 368 -----------~d~~---------gd----~~~-~~~L~Lp~GSLLVMsGeAR~~WkHgIpk--~r~rRISLTFRrV~p~ 420 (630)
+.++ ++ .++ .+.|.||++|||||.|+|||.|+|+|-+ ++++||.+|||...+.
T Consensus 201 ~sg~~nL~~~~s~~~e~l~~~li~~s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vlr~hi~~RRvcvt~RE~~~~ 280 (306)
T KOG3959|consen 201 ASGIINLNTNFSESNEFLSINLINGSVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVLRHHIRGRRVCVTMREAAKD 280 (306)
T ss_pred ccceeeeccCccccccccchhhcccchhhhccceEEEeecCcceeEEeechhHhhHHHHHHHHhhhhceeeeeHHhhhHh
Confidence 0111 00 112 4799999999999999999999999998 8999999999999887
Q ss_pred CCCCCCCCC
Q 006795 421 KLTPTDGQR 429 (630)
Q Consensus 421 ~~~~~d~~~ 429 (630)
-....|.+.
T Consensus 281 f~~Gg~~qe 289 (306)
T KOG3959|consen 281 FAEGGELQE 289 (306)
T ss_pred hccchhhhh
Confidence 755444443
No 8
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=97.68 E-value=0.00085 Score=68.52 Aligned_cols=150 Identities=17% Similarity=0.259 Sum_probs=86.2
Q ss_pred eEEecCCCCHHHHHHHHHHHHhhhhcCCceeecCceEEecCCcccCCCceeEecCCcccCCCCCcccCCCCCCCCCCCCC
Q 006795 223 LKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEPI 302 (630)
Q Consensus 223 L~l~pdFLS~eEe~kLLs~I~EL~~sgRR~qlyG~ty~v~Rr~~kg~gReviq~G~~Y~Ys~~e~~n~~gi~~~~~vePI 302 (630)
+..++++||++|+++|.+.++...|.--+..- |.. .+..|.+. +-..-.++
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~ta-G~~----~~~vKnN~------------------------ql~~d~~~ 52 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVTA-GAQ----AAQVKNNQ------------------------QLPEDSPL 52 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcCc-Ccc----chhccccc------------------------ccCCCCHH
Confidence 56899999999999999999887764211111 100 00011000 00001111
Q ss_pred cHHH-HHHHHHHHhCccC-----CCCCCEEEEeccCCCCCCCCCCCCCCCC--------CCEEE--EEcCce------ee
Q 006795 303 PSLL-QDVIDRLVGLQIM-----TVKPDSCIVDVFNEGDHSQPHISPSWFG--------RPVCI--LFLTEC------DM 360 (630)
Q Consensus 303 P~~L-q~LidRLv~~~ll-----~~~PNqcLIN~Y~pGdgI~PHvD~p~FG--------~PIvs--LSLSec------vM 360 (630)
-..| +.|.++|.+..++ +.+.-.+++|.|.+|+.-++|+|..... +..++ |.|++. .+
T Consensus 53 a~~l~~~i~~~L~~~~l~~sa~lp~~i~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl 132 (226)
T PRK05467 53 ARELGNLILDALTRNPLFFSAALPRKIHPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGEL 132 (226)
T ss_pred HHHHHHHHHHHHhcCchhhhhccccccccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCce
Confidence 1222 2333344322221 2333367899999999999999875331 11222 345432 12
Q ss_pred eeeeccCCCCCCCCcceEEEEecCCcEEEecccccccccccccC-CCCCeEEEEe
Q 006795 361 TFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISS-IRKQRILVTF 414 (630)
Q Consensus 361 ~Fgr~~~~d~~gd~~~~~~L~Lp~GSLLVMsGeAR~~WkHgIpk-~r~rRISLTF 414 (630)
.|.. ..+...|.++.|++||+... ..|.+.+ .++.|++++|
T Consensus 133 ~~~~---------~~g~~~Vkp~aG~~vlfps~----~lH~v~pVt~G~R~~~~~ 174 (226)
T PRK05467 133 VIED---------TYGEHRVKLPAGDLVLYPST----SLHRVTPVTRGVRVASFF 174 (226)
T ss_pred EEec---------CCCcEEEecCCCeEEEECCC----CceeeeeccCccEEEEEe
Confidence 2211 11357899999999999964 5699999 7889999998
No 9
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=97.59 E-value=0.0023 Score=61.23 Aligned_cols=161 Identities=15% Similarity=0.220 Sum_probs=91.2
Q ss_pred CceEEecCCCCHHHHHHHHHHHHhhhhcCCceeec-CceEEecCCcccCCCceeEecCCcccCCCCCcccCCCCCCCCCC
Q 006795 221 DGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQ-GPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRI 299 (630)
Q Consensus 221 pGL~l~pdFLS~eEe~kLLs~I~EL~~sgRR~qly-G~ty~v~Rr~~kg~gReviq~G~~Y~Ys~~e~~n~~gi~~~~~v 299 (630)
|++.+++||||++|+++|++......+. ..+. +..-.-... .-|. ..+. ....
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~---~~~~~~~~~~~~~~----~~R~--~~~~-----------------~l~~ 54 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWR---GEVTRGDTNPNHDS----KYRQ--SNGT-----------------WLEL 54 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhccc---ceeecCCCCccccC----CCEe--ecce-----------------ecCC
Confidence 6789999999999999999988765431 1111 100000000 0000 0000 0000
Q ss_pred CCCcHHHHHHHHHHHhCccC----CCCCCEEEEeccCCCCCCCCCCCCCCCC---CCEEEE--EcCc----eeeeeeecc
Q 006795 300 EPIPSLLQDVIDRLVGLQIM----TVKPDSCIVDVFNEGDHSQPHISPSWFG---RPVCIL--FLTE----CDMTFGRMI 366 (630)
Q Consensus 300 ePIP~~Lq~LidRLv~~~ll----~~~PNqcLIN~Y~pGdgI~PHvD~p~FG---~PIvsL--SLSe----cvM~Fgr~~ 366 (630)
..-.+....|.+|+...-.+ ...-..+.|..|.+|+...+|.|..... ..++++ -|++ -.+.|....
T Consensus 55 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~ 134 (178)
T smart00702 55 LKGDLVIERIRQRLADFLGLLRGLPLSAEDAQVARYGPGGHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLG 134 (178)
T ss_pred CCCCHHHHHHHHHHHHHHCCCchhhccCcceEEEEECCCCcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCC
Confidence 00133445555655432112 2445677888999999999999875432 445553 3432 223332210
Q ss_pred CCCCCCCCcceEEEEecCCcEEEecccccccccccccCCC-CCeEEEEee
Q 006795 367 GIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIR-KQRILVTFT 415 (630)
Q Consensus 367 ~~d~~gd~~~~~~L~Lp~GSLLVMsGeAR~~WkHgIpk~r-~rRISLTFR 415 (630)
.....+|.-..|++|++...-. ...|++.++. +.|++|+..
T Consensus 135 -------~~~~~~v~P~~G~~v~f~~~~~-~~~H~v~pv~~G~r~~~~~W 176 (178)
T smart00702 135 -------LMVCATVKPKKGDLLFFPSGRG-RSLHGVCPVTRGSRWAITGW 176 (178)
T ss_pred -------CccceEEeCCCCcEEEEeCCCC-CccccCCcceeCCEEEEEEE
Confidence 0124588889999999875321 4669999955 799999863
No 10
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=97.53 E-value=6.4e-05 Score=65.03 Aligned_cols=82 Identities=13% Similarity=0.211 Sum_probs=46.2
Q ss_pred CCEEEEeccC---CCCCCCCCCCCCCCCCCEEEEEc--CceeeeeeeccCCCCCCCCcceEEEEecCCcEEE--------
Q 006795 323 PDSCIVDVFN---EGDHSQPHISPSWFGRPVCILFL--TECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLV-------- 389 (630)
Q Consensus 323 PNqcLIN~Y~---pGdgI~PHvD~p~FG~PIvsLSL--SecvM~Fgr~~~~d~~gd~~~~~~L~Lp~GSLLV-------- 389 (630)
+++|.||+|. .+.++.+|.|.. ..+++|.+ ...-+.|.... ..+.+...++.++|
T Consensus 1 ~~~~~~~~Y~~~~~~~~~~~H~D~~---~~~~Til~~~~~~gL~~~~~~---------~~~~v~~~~~~~~v~~G~~l~~ 68 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGVGIGPHTDDE---DGLLTILFQDEVGGLQVRDDG---------EWVDVPPPPGGFIVNFGDALEI 68 (98)
T ss_dssp --EEEEEEE-SCCGCEEEEEEEES-----SSEEEEEETSTS-EEEEETT---------EEEE----TTCEEEEEBHHHHH
T ss_pred CCEEEEEECCCcccCCceeCCCcCC---CCeEEEEecccchheeccccc---------cccCccCccceeeeeceeeeec
Confidence 4789999999 667899999864 35666555 56677776542 23344444444444
Q ss_pred ecccccccccccccCC-CCCeEEEEeee
Q 006795 390 MQGKSADIAKHAISSI-RKQRILVTFTK 416 (630)
Q Consensus 390 MsGeAR~~WkHgIpk~-r~rRISLTFRr 416 (630)
|++..+..+.|.|... .+.|+||||+.
T Consensus 69 ~t~g~~~~~~HrV~~~~~~~R~s~~~f~ 96 (98)
T PF03171_consen 69 LTNGRYPATLHRVVPPTEGERYSLTFFL 96 (98)
T ss_dssp HTTTSS----EEEE--STS-EEEEEEEE
T ss_pred ccCCccCCceeeeEcCCCCCEEEEEEEE
Confidence 5555888999999997 49999999973
No 11
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=97.07 E-value=0.00052 Score=73.80 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=78.6
Q ss_pred cCCcccCCCCCcccCCCCCCCCCCCCCcHHHHHHHH-HHHh-CccCC-CCCCEEEEeccCCCCCCCCCCCCCCCC--CCE
Q 006795 276 LGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVID-RLVG-LQIMT-VKPDSCIVDVFNEGDHSQPHISPSWFG--RPV 350 (630)
Q Consensus 276 ~G~~Y~Ys~~e~~n~~gi~~~~~vePIP~~Lq~Lid-RLv~-~~ll~-~~PNqcLIN~Y~pGdgI~PHvD~p~FG--~PI 350 (630)
+|..|++...+.- +....+...++++|..+.. +... .+... ..+..+|+|||..++-++-|.|..++| .|+
T Consensus 170 ~G~~~dw~s~~~~----~~~s~k~~~~~~~ll~~~~~~~~~a~~~~~~~~~~Gli~nYlsi~~tl~ih~d~reld~~~pf 245 (378)
T KOG2731|consen 170 LGNQYDWSSKDIF----IFLSKKHYNIKPSLLGLLREKVKAAKGFSHIVIRPGLIKNYLSIDDTLGIHLDCRELDLSKPF 245 (378)
T ss_pred cccccCCcccccc----ccccccCCCCChHHhhhhhhhhhhhcCccceeccCcceeeecccCcEEEEEeehhhcccCCcc
Confidence 4666666543311 0012344566677655433 3221 12222 345668999999999999999887665 588
Q ss_pred EEEEc-CceeeeeeeccCCCCCCCCcceEEEEecCCcEEEeccccccccccccc
Q 006795 351 CILFL-TECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAIS 403 (630)
Q Consensus 351 vsLSL-SecvM~Fgr~~~~d~~gd~~~~~~L~Lp~GSLLVMsGeAR~~WkHgIp 403 (630)
++.|| -+|.+.++-.... .....+.|..|+.++|.|.+| ...|+|+
T Consensus 246 ~s~s~g~~ai~lLg~m~l~------e~p~p~~lrsGdv~im~Gfsr-lv~haIp 292 (378)
T KOG2731|consen 246 YSPSLGQGAILLLGMMCLG------ENPDPMTLRSGDVVIMDGFSR-LVEHAIP 292 (378)
T ss_pred ccccccccceeeecccccC------CCCCccccccCceEeecchHH-HHhhccc
Confidence 88888 6888888755332 235678999999999999988 5779999
No 12
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=95.47 E-value=0.0077 Score=52.18 Aligned_cols=81 Identities=20% Similarity=0.352 Sum_probs=52.6
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCCEEEE--EcCce-------eeeeeeccCCCCCCCCcceEEEE-----ecCCcEEEec
Q 006795 326 CIVDVFNEGDHSQPHISPSWFGRPVCIL--FLTEC-------DMTFGRMIGIDHPGDYRGTLRLS-----VAPGSLLVMQ 391 (630)
Q Consensus 326 cLIN~Y~pGdgI~PHvD~p~FG~PIvsL--SLSec-------vM~Fgr~~~~d~~gd~~~~~~L~-----Lp~GSLLVMs 391 (630)
|-|+.|.+|+.+.||.|.......++++ -|++. .+.|.... +.. .....+. ...|+++++.
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~--~~~---~~~~~~~~~~~~p~~g~~v~F~ 75 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSK--DSD---DVSREVEDFDIVPKPGRLVIFP 75 (100)
T ss_dssp -EEEEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS---TS---STCEEEGGGSEE-BTTEEEEEE
T ss_pred CEEEEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccc--cCC---CcceEEEeccccCCCCEEEEEe
Confidence 5689999999999999985444445543 45422 24443221 000 1122333 8999999999
Q ss_pred ccccccccccccCC--CCCeEEEEe
Q 006795 392 GKSADIAKHAISSI--RKQRILVTF 414 (630)
Q Consensus 392 GeAR~~WkHgIpk~--r~rRISLTF 414 (630)
+ ....|++.++ ..+|++||+
T Consensus 76 ~---~~~~H~v~~v~~~~~R~~l~~ 97 (100)
T PF13640_consen 76 S---DNSLHGVTPVGEGGRRYSLTF 97 (100)
T ss_dssp S---CTCEEEEEEE-EESEEEEEEE
T ss_pred C---CCCeecCcccCCCCCEEEEEE
Confidence 9 5678999996 789999987
No 13
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=93.63 E-value=1.3 Score=46.85 Aligned_cols=41 Identities=10% Similarity=0.104 Sum_probs=31.9
Q ss_pred eEEEEecCCcEEEecccccccccccccCC---CCCeEEEEeeeccCCC
Q 006795 377 TLRLSVAPGSLLVMQGKSADIAKHAISSI---RKQRILVTFTKSQPKK 421 (630)
Q Consensus 377 ~~~L~Lp~GSLLVMsGeAR~~WkHgIpk~---r~rRISLTFRrV~p~~ 421 (630)
.+.+.|++|++++|.+.+- |+=-+. ..+|+.+++|.+....
T Consensus 208 ~v~~~lkaGd~~~f~~~t~----HgS~~N~S~~~~R~~~~~ry~~~~~ 251 (288)
T TIGR01762 208 AVPMQMKAGQFIIFWSTLM----HASYPNSGESQMRMGFASRYVPSFV 251 (288)
T ss_pred eeeeeeCCceEEEECCCce----ecCCCCCCCCceEEEEEEEEcCCCc
Confidence 4689999999999999755 665552 3469999999986533
No 14
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=93.42 E-value=1.4 Score=47.36 Aligned_cols=168 Identities=13% Similarity=0.230 Sum_probs=93.6
Q ss_pred cccCCceEEecCCCCHHHHHHHHHHHHhhhhcCCceeec----CceEEecCCcccCCCceeEecCCcccCCCCCcccCCC
Q 006795 217 VNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQ----GPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGG 292 (630)
Q Consensus 217 VNvVpGL~l~pdFLS~eEe~kLLs~I~EL~~sgRR~qly----G~ty~v~Rr~~kg~gReviq~G~~Y~Ys~~e~~n~~g 292 (630)
++.-|-+.+|+||||.+|++.|++.....- ++-... |....-.. |. ..|.
T Consensus 50 lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l---~~S~v~~~~~g~~~~s~~-------RT--S~~~-------------- 103 (310)
T PLN00052 50 VSWQPRIFVYKGFLSDAECDHLVKLAKKKI---QRSMVADNKSGKSVMSEV-------RT--SSGM-------------- 103 (310)
T ss_pred ecCCCCEEEECCcCCHHHHHHHHHhccccc---ccceeecCCCCccccCCC-------EE--ecce--------------
Confidence 444588999999999999999998765311 111111 11110000 10 0010
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhCccCCC-CCCEEEEeccCCCCCCCCCCCCC-------CCCCCEEEEEc--Cce----
Q 006795 293 TSRDRRIEPIPSLLQDVIDRLVGLQIMTV-KPDSCIVDVFNEGDHSQPHISPS-------WFGRPVCILFL--TEC---- 358 (630)
Q Consensus 293 i~~~~~vePIP~~Lq~LidRLv~~~ll~~-~PNqcLIN~Y~pGdgI~PHvD~p-------~FG~PIvsLSL--Sec---- 358 (630)
... ..--+.+..|.+|+..+..++. .-..+-|-.|..|+.-.+|.|-- .-|+.++|+.+ ++.
T Consensus 104 ---~l~-~~~dpvv~~I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GG 179 (310)
T PLN00052 104 ---FLD-KRQDPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGG 179 (310)
T ss_pred ---eec-CCCCHHHHHHHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCC
Confidence 000 0012467888888876655553 23345555699999999999731 12457887544 321
Q ss_pred eeeeeeccCCC-CCC------CCcceEEEEecCCcEEEecc-----cccccccccccC-CCCCeEEEEe
Q 006795 359 DMTFGRMIGID-HPG------DYRGTLRLSVAPGSLLVMQG-----KSADIAKHAISS-IRKQRILVTF 414 (630)
Q Consensus 359 vM~Fgr~~~~d-~~g------d~~~~~~L~Lp~GSLLVMsG-----eAR~~WkHgIpk-~r~rRISLTF 414 (630)
.-.|-...... .+. -.+..+.|.=..|+.|++-- ..-..-.|+.++ +.+.++.+|.
T Consensus 180 eT~FP~~~~~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atk 248 (310)
T PLN00052 180 ETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPK 248 (310)
T ss_pred ceecCCcccccccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEE
Confidence 11232211000 000 00124788889999999753 334456899888 4678888884
No 15
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=92.93 E-value=0.67 Score=46.93 Aligned_cols=83 Identities=22% Similarity=0.374 Sum_probs=51.5
Q ss_pred EEeccCCCCCCCCCCCCCCCC-CCEE--EEEc-CceeeeeeeccCCCC-----CCCCcceEEEEecCCcEEEeccccccc
Q 006795 327 IVDVFNEGDHSQPHISPSWFG-RPVC--ILFL-TECDMTFGRMIGIDH-----PGDYRGTLRLSVAPGSLLVMQGKSADI 397 (630)
Q Consensus 327 LIN~Y~pGdgI~PHvD~p~FG-~PIv--sLSL-SecvM~Fgr~~~~d~-----~gd~~~~~~L~Lp~GSLLVMsGeAR~~ 397 (630)
+-|.|.+|+.-++|+|...-. .|-. .++- -.|++.|......+. ++-| +.+.|.||.|||++.-+.+
T Consensus 85 ~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtY-g~h~VklPAGdLVlypStS--- 160 (229)
T COG3128 85 LFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTY-GNHRVKLPAGDLVLYPSTS--- 160 (229)
T ss_pred hhhhccCCCcccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEeccc-cceEEeccCCCEEEccccc---
Confidence 578999999999999864211 1111 1111 124444432211110 0112 4689999999999999886
Q ss_pred ccccccC-CCCCeEEEEe
Q 006795 398 AKHAISS-IRKQRILVTF 414 (630)
Q Consensus 398 WkHgIpk-~r~rRISLTF 414 (630)
.|.|.+ .|+.|+-.-|
T Consensus 161 -lH~VtPVTRg~R~asff 177 (229)
T COG3128 161 -LHEVTPVTRGERFASFF 177 (229)
T ss_pred -ceeccccccCceEEEee
Confidence 488887 6889988765
No 16
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=92.70 E-value=0.32 Score=50.64 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=31.5
Q ss_pred ceEEEEecCCcEEEecccccccccccccCCCCCeEEEEeee
Q 006795 376 GTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTK 416 (630)
Q Consensus 376 ~~~~L~Lp~GSLLVMsGeAR~~WkHgIpk~r~rRISLTFRr 416 (630)
+.+.++|+.||++.|-++.-...+|++-.-...|+|=|-|-
T Consensus 210 P~L~vPL~sgd~Y~Mldd~N~tHqH~VlaG~~~RfSSTHRV 250 (253)
T PF12933_consen 210 PGLAVPLRSGDCYYMLDDFNATHQHCVLAGSSARFSSTHRV 250 (253)
T ss_dssp -EEEEEE-TT-EEEE-TTHHHHEEEEEE--SS-EEEEEEE-
T ss_pred CeeEEeccCCCeEEEccccchhhHHHHhcCCCcccccccee
Confidence 57999999999999999999999999999888899999873
No 17
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=88.68 E-value=2.1 Score=50.90 Aligned_cols=9 Identities=0% Similarity=0.010 Sum_probs=4.7
Q ss_pred CCccchhhh
Q 006795 12 ADDPFVMWL 20 (630)
Q Consensus 12 ~~d~~~~w~ 20 (630)
+||-+|+|+
T Consensus 116 ek~kmis~~ 124 (1102)
T KOG1924|consen 116 EKRKMISQY 124 (1102)
T ss_pred HHHHHHHHH
Confidence 344555555
No 18
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=83.07 E-value=4.3 Score=40.44 Aligned_cols=109 Identities=19% Similarity=0.337 Sum_probs=68.6
Q ss_pred CCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCC---CEEE-EEcCceeeeeeecc--CCCC-CC
Q 006795 300 EPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGR---PVCI-LFLTECDMTFGRMI--GIDH-PG 372 (630)
Q Consensus 300 ePIP~~Lq~LidRLv~~~ll~~~PNqcLIN~Y~pGdgI~PHvD~p~FG~---PIvs-LSLSecvM~Fgr~~--~~d~-~g 372 (630)
..+|+.+.+++++.-+.+ -.+|..+|+ .|.+|++...|.|- ||+ |+-. +.||+---+|.--+ -.+. +.
T Consensus 41 ~~yP~~~~~fl~~ch~aG--Q~rptplll-rY~~gdyn~LHqdl--yGe~vFPlQvv~lLs~Pg~DftGGEFVltEQrPR 115 (173)
T PF09859_consen 41 ARYPATLAEFLARCHAAG--QTRPTPLLL-RYGPGDYNCLHQDL--YGEHVFPLQVVILLSEPGEDFTGGEFVLTEQRPR 115 (173)
T ss_pred CCCCccHHHHHHHHHhcc--CCCCchhhh-eeCCCCccccccCC--CCCcccCeEEEEEcCCCCCcccCceEEEEEecCC
Confidence 467888888888865432 256666555 69999999999973 554 4444 34554433332110 0011 11
Q ss_pred CCcceEEEEecCCcEEEec----------ccccccccccccCCC-CCeEEEE
Q 006795 373 DYRGTLRLSVAPGSLLVMQ----------GKSADIAKHAISSIR-KQRILVT 413 (630)
Q Consensus 373 d~~~~~~L~Lp~GSLLVMs----------GeAR~~WkHgIpk~r-~rRISLT 413 (630)
......-|.|..|+.+|+. |.-|-.-+|+|..++ ++|..|.
T Consensus 116 ~QSR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLg 167 (173)
T PF09859_consen 116 MQSRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLG 167 (173)
T ss_pred ccCccccCCcCCCCEEEEecCCCCcCCCccceecccccccccccccceEEEE
Confidence 1112466899999999985 566677799999954 6777664
No 19
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=78.57 E-value=3.8 Score=36.18 Aligned_cols=84 Identities=18% Similarity=0.332 Sum_probs=41.2
Q ss_pred EEEeccCCCCCCCCCC-CCCCCCCCEEEEEc-C-ceeeeeeeccCC----------CCCCCCcceEEEEecCCcEEEecc
Q 006795 326 CIVDVFNEGDHSQPHI-SPSWFGRPVCILFL-T-ECDMTFGRMIGI----------DHPGDYRGTLRLSVAPGSLLVMQG 392 (630)
Q Consensus 326 cLIN~Y~pGdgI~PHv-D~p~FG~PIvsLSL-S-ecvM~Fgr~~~~----------d~~gd~~~~~~L~Lp~GSLLVMsG 392 (630)
|=+|.|+.|+...+|. ....+. .|+=|.+ . ...+.|...... +..........+....|+|||+-+
T Consensus 2 ~W~ni~~~g~~~~~H~H~~s~~S-gVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs 80 (101)
T PF13759_consen 2 SWANIYRKGGYNEPHNHPNSWLS-GVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPS 80 (101)
T ss_dssp EEEEEE-TT--EEEE--TT-SEE-EEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEET
T ss_pred eeEEEeCCCCccCceECCCcCEE-EEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCC
Confidence 3478899999988888 333322 1222334 2 223555433210 001112346889999999999997
Q ss_pred cccccccccccC--CCCCeEEEEe
Q 006795 393 KSADIAKHAISS--IRKQRILVTF 414 (630)
Q Consensus 393 eAR~~WkHgIpk--~r~rRISLTF 414 (630)
-.. |++.+ ....||||.|
T Consensus 81 ~l~----H~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 81 WLW----HGVPPNNSDEERISISF 100 (101)
T ss_dssp TSE----EEE----SSS-EEEEEE
T ss_pred CCE----EeccCcCCCCCEEEEEc
Confidence 644 88888 3468999987
No 20
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=67.37 E-value=6.9 Score=38.52 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=50.4
Q ss_pred CCCCEEEEeccCCCCCCCCCCCCCCCCCCEEEE-Ec-----CceeeeeeeccCCCCCCCCcceEEEEecCCcEEEecccc
Q 006795 321 VKPDSCIVDVFNEGDHSQPHISPSWFGRPVCIL-FL-----TECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKS 394 (630)
Q Consensus 321 ~~PNqcLIN~Y~pGdgI~PHvD~p~FG~PIvsL-SL-----SecvM~Fgr~~~~d~~gd~~~~~~L~Lp~GSLLVMsGeA 394 (630)
..|..+.++. .-....|.|...+...+-.+ .| .+..+.+-.. + ..-.-+.|.+.+||+|++-|.
T Consensus 74 ~pFs~~sv~~---nr~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~---~---~~~~g~~~~~~~GtVl~~~~~- 143 (171)
T PF12851_consen 74 RPFSGVSVIS---NRCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGL---D---PNILGVAFAYQPGTVLIFCAK- 143 (171)
T ss_pred cceeceEEEe---ecCccceecCCCCCCCeEEEEecCCccccCceEecccc---c---cccCCEEEecCCCcEEEEccc-
Confidence 4566655552 12356788875553322222 22 2233333220 0 001358899999999999987
Q ss_pred cccccccccCCC------CCeEEEEe
Q 006795 395 ADIAKHAISSIR------KQRILVTF 414 (630)
Q Consensus 395 R~~WkHgIpk~r------~rRISLTF 414 (630)
...|++.++. ..||||.|
T Consensus 144 --~~~Hgvtpv~~~~~~~~~R~slvf 167 (171)
T PF12851_consen 144 --RELHGVTPVESPNRNHGTRISLVF 167 (171)
T ss_pred --ceeeecCcccCCCCCCCeEEEEEE
Confidence 5789999966 79999998
No 21
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=63.65 E-value=25 Score=35.72 Aligned_cols=88 Identities=15% Similarity=0.245 Sum_probs=53.9
Q ss_pred CCCEEEEeccCCCCCCCCCCCCC-CCCCCEEEEEc--CceeeeeeeccCC----------CCCCCCcceEEEEecCCcEE
Q 006795 322 KPDSCIVDVFNEGDHSQPHISPS-WFGRPVCILFL--TECDMTFGRMIGI----------DHPGDYRGTLRLSVAPGSLL 388 (630)
Q Consensus 322 ~PNqcLIN~Y~pGdgI~PHvD~p-~FG~PIvsLSL--SecvM~Fgr~~~~----------d~~gd~~~~~~L~Lp~GSLL 388 (630)
.+..+=+|.+.+|+....|.-+. ++. .++=|++ ....+.|...... ..+......+.+.-..|.||
T Consensus 94 ~i~~~W~ni~~~Gg~h~~H~Hp~~~lS-gvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lv 172 (201)
T TIGR02466 94 RIQKAWVNILPQGGTHSPHLHPGSVIS-GTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVL 172 (201)
T ss_pred EEeeEeEEEcCCCCccCceECCCceEE-EEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEE
Confidence 34567789999999989998443 322 1222455 2234555432110 00001112356777999999
Q ss_pred EecccccccccccccC--CCCCeEEEEe
Q 006795 389 VMQGKSADIAKHAISS--IRKQRILVTF 414 (630)
Q Consensus 389 VMsGeAR~~WkHgIpk--~r~rRISLTF 414 (630)
|+-.-.+ |++.+ ..+.||||.|
T Consensus 173 lFPS~L~----H~v~p~~~~~~RISiSF 196 (201)
T TIGR02466 173 LFESWLR----HEVPPNESEEERISVSF 196 (201)
T ss_pred EECCCCc----eecCCCCCCCCEEEEEE
Confidence 9988755 88888 3579999998
No 22
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=57.18 E-value=60 Score=34.93 Aligned_cols=177 Identities=14% Similarity=0.141 Sum_probs=87.7
Q ss_pred eeeecccCCcccccCCceEEecCCCCHHHHHHHHHHHHh-hhhcCCceeecCceEEecCCcccCCCceeEecCCcccCCC
Q 006795 206 FVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVND-LRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGP 284 (630)
Q Consensus 206 f~~~E~vdg~~VNvVpGL~l~pdFLS~eEe~kLLs~I~E-L~~sgRR~qlyG~ty~v~Rr~~kg~gReviq~G~~Y~Ys~ 284 (630)
|...-.++=..+.--|.+.+|.|||+.+|++.|++.-.. +. ..++...+.+-.... .. |
T Consensus 82 ~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~--~stv~~~~~~~~~~~----------~~----~---- 141 (289)
T KOG1591|consen 82 FLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLE--RSTVVADKGTGHSTT----------SA----V---- 141 (289)
T ss_pred ceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhh--ceeeeccCCcccccc----------ee----e----
Confidence 333333333445556889999999999999999876552 22 111111110000000 00 0
Q ss_pred CCcccCCCCCCCCCCCCCcHHHHHHHHHHHhCccCC-CCCCEEEEeccCCCCCCCCCCCCC-----C------CCCCEEE
Q 006795 285 PEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMT-VKPDSCIVDVFNEGDHSQPHISPS-----W------FGRPVCI 352 (630)
Q Consensus 285 ~e~~n~~gi~~~~~vePIP~~Lq~LidRLv~~~ll~-~~PNqcLIN~Y~pGdgI~PHvD~p-----~------FG~PIvs 352 (630)
..+.++.. . ..=...+..|-+|+.....++ ..-..+-|=-|..|+.-.+|.|-- . .|+.|++
T Consensus 142 ---R~S~~t~l--~-~~~~~~~~~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT 215 (289)
T KOG1591|consen 142 ---RTSSGTFL--P-DGASPVVSRIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIAT 215 (289)
T ss_pred ---EecceeEe--c-CCCCHHHHHHHHHHHhccCCCcccCccceEEEecCCccccccccccccccchhhhhcccCCccee
Confidence 00001100 1 112345677777776555454 344555444599999999998532 1 3556666
Q ss_pred EEcCceeeeeeeccCCCCCC--CCcceEEEEecCCcEEEec-----ccccccccccccC-CCCCeEEEE
Q 006795 353 LFLTECDMTFGRMIGIDHPG--DYRGTLRLSVAPGSLLVMQ-----GKSADIAKHAISS-IRKQRILVT 413 (630)
Q Consensus 353 LSLSecvM~Fgr~~~~d~~g--d~~~~~~L~Lp~GSLLVMs-----GeAR~~WkHgIpk-~r~rRISLT 413 (630)
+.+ .+.......+.- +....+.|....||.|..- |+--..=+|+-++ ..+.|++-|
T Consensus 216 ~l~-----yls~v~~GG~TvFP~~~~~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~ 279 (289)
T KOG1591|consen 216 VLM-----YLSDVEQGGETVFPNLGMKPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIAT 279 (289)
T ss_pred EEE-----EecccCCCCcccCCCCCCcccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeee
Confidence 433 221111100000 0011247888889988752 2222223688777 345555544
No 23
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=45.33 E-value=1.4e+02 Score=33.46 Aligned_cols=10 Identities=50% Similarity=1.192 Sum_probs=6.1
Q ss_pred eeeCCCCCCC
Q 006795 536 VFLPPPGSGG 545 (630)
Q Consensus 536 vflp~~gsg~ 545 (630)
.|.|||.+|.
T Consensus 318 affpPP~~~s 327 (498)
T KOG4849|consen 318 AFFPPPQLGS 327 (498)
T ss_pred ccCCCCCcCc
Confidence 4777776543
No 24
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=38.86 E-value=3.8e+02 Score=30.85 Aligned_cols=32 Identities=9% Similarity=-0.066 Sum_probs=19.9
Q ss_pred hHHHHHHhhhccccchhhhccccchHHHHHHHHHHHHHHhhccc
Q 006795 48 DFAINCIQQRRCNWNSVLHLQQYFSVSEVMLALQQVAWRKQQRS 91 (630)
Q Consensus 48 d~v~~~~~~rr~~w~~vl~mq~~~sv~dv~~~Lqqv~~~r~~~~ 91 (630)
|-||+-|..-- ..+.+=+-.||+-.+|.....
T Consensus 49 EdIFGELf~da------------~~f~~R~NSLQ~RIDRL~vkV 80 (518)
T KOG1830|consen 49 EDIFGELFNDA------------NNFNHRANSLQERIDRLAVKV 80 (518)
T ss_pred HHHHHHHHHHh------------hhhhhhhhHHHHHHHHHhhhh
Confidence 34677765433 345566778888888864433
No 25
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=34.97 E-value=1.3e+02 Score=34.98 Aligned_cols=77 Identities=39% Similarity=0.771 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCccccCCCCCCCCceeecCCC--CCCCCCCCCccCCCCCCC--CCCCCCCCCCCCCCC----CCCCCCce
Q 006795 464 IPTTGVLPAPAIRAQIPPTNGVPPIFVSPPV--TPAMPFPAPVPIPPGSTG--WTAAPPRHTPPPPPP----RLPVPGTG 535 (630)
Q Consensus 464 ~~~~~v~p~p~~~~~~~~~~~~qp~f~~~~v--~~~~pf~~~v~~~~~~~~--w~~~~pr~~~~~~~~----r~p~pgtg 535 (630)
.+++.+.|+|+.|+-.|+| |+ +.+.|-+ |+|-|+...| =.+++|-+|||||.| -=|-|=+-
T Consensus 381 ~s~~~~~p~~Pgr~aPp~P----------P~~~ps~~p~~-PpPPPPs~~g~~Pp~apPppPPPPPmPs~gagppPPP~~ 449 (569)
T KOG3671|consen 381 RSRAVSPPAPPGRPAPPPP----------PLGNPSAVPVP-PPPPPPSLPGSAPPSAPPPPPPPPPMPSTGAGPPPPPSA 449 (569)
T ss_pred CCccccCCCCCCCCCCCCC----------CCCCCCCCCCC-CCCCCCcccCCCCCCCCCCCCcCCCCCccCCCCCCCCCc
Q ss_pred eeeCCCCCCCCCCcCc
Q 006795 536 VFLPPPGSGGSSSPRQ 551 (630)
Q Consensus 536 vflp~~gsg~~~~~~~ 551 (630)
-.+||-|.|...++.+
T Consensus 450 ~~~Pp~~aga~aPp~p 465 (569)
T KOG3671|consen 450 PIAPPQGAGAAAPPAP 465 (569)
T ss_pred cCCCCCccCCCCCCCC
No 26
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.87 E-value=1.1e+02 Score=31.36 Aligned_cols=103 Identities=20% Similarity=0.378 Sum_probs=64.7
Q ss_pred CCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCC---CEE-EEEcCceeeeeee--ccCCC-CCC
Q 006795 300 EPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGR---PVC-ILFLTECDMTFGR--MIGID-HPG 372 (630)
Q Consensus 300 ePIP~~Lq~LidRLv~~~ll~~~PNqcLIN~Y~pGdgI~PHvD~p~FG~---PIv-sLSLSecvM~Fgr--~~~~d-~~g 372 (630)
.+||..|.+.++++-+.+ ..+|.-+++. |-+|++-..|.| .||+ |+- .|.||+---+|.. -.-.+ .+.
T Consensus 103 ~r~P~tlad~L~~CHaAG--Q~RpTpLlLq-YgpgD~NcLHQD--LYGelvFPLQvailLsePg~DfTGGEF~lvEQRPR 177 (236)
T COG3826 103 ARYPATLADFLARCHAAG--QVRPTPLLLQ-YGPGDYNCLHQD--LYGELVFPLQVAILLSEPGTDFTGGEFVLVEQRPR 177 (236)
T ss_pred CCCchhHHHHHHHHHhcc--CccCCceeEE-ecCCccchhhhh--hhhceeeeeeEEEeccCCCCcccCceEEEEecccc
Confidence 578888888888864322 2577777775 999999999998 3665 333 2455543333321 11011 111
Q ss_pred CCcceEEEEecCCcEEEe----------cccccccccccccCCCC
Q 006795 373 DYRGTLRLSVAPGSLLVM----------QGKSADIAKHAISSIRK 407 (630)
Q Consensus 373 d~~~~~~L~Lp~GSLLVM----------sGeAR~~WkHgIpk~r~ 407 (630)
......-+.|+.|+-+|+ .|..|-.-.|++..+|+
T Consensus 178 ~QSr~~vvpLrqG~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRS 222 (236)
T COG3826 178 MQSRPTVVPLRQGDGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRS 222 (236)
T ss_pred cccCCceeeccCCceEEEEeecCcccCccCccccchhcchhhhhc
Confidence 111245689999999988 46777777888888543
No 27
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.53 E-value=62 Score=35.10 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=41.2
Q ss_pred eEEEEecCCcEEEecccccccccccccC--CCCCeEEEEeeeccCCCCCCCCCCCCCCCCC
Q 006795 377 TLRLSVAPGSLLVMQGKSADIAKHAISS--IRKQRILVTFTKSQPKKLTPTDGQRLASPGI 435 (630)
Q Consensus 377 ~~~L~Lp~GSLLVMsGeAR~~WkHgIpk--~r~rRISLTFRrV~p~~~~~~d~~~~~~p~~ 435 (630)
.+.+.|+.||+|++.|... |+-.. ...+|+.|||+.+..- ..+.++..|.++..
T Consensus 192 ~~pv~lekGDallF~~~L~----HaA~aNrT~~~R~A~~~~~~~~~-~~~~~n~~l~~~~~ 247 (299)
T COG5285 192 AVPVELEKGDALLFNGSLW----HAAGANRTSADRVALTLQFTVSF-VKQQVNQVLSPPRE 247 (299)
T ss_pred ceeeeecCCCEEEEcchhh----hhhhcCCCCcccceEEEEEeecc-ccccCCcccCCCce
Confidence 6899999999999999865 66565 3468999999988765 45666666655443
No 28
>PLN02904 oxidoreductase
Probab=30.14 E-value=1.4e+02 Score=32.59 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=50.1
Q ss_pred EEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-CceeeeeeeccCCCCCCCCcceEEEEecCCcEEEeccccccc
Q 006795 325 SCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADI 397 (630)
Q Consensus 325 qcLIN~Y~pG------dgI~PHvD~p~FG~PIvsLSL-SecvM~Fgr~~~~d~~gd~~~~~~L~Lp~GSLLVMsGeAR~~ 397 (630)
.+-+|+|.+- -++++|.|- | .+||.+ ...-+..... .| +=+.|.-.+|+++|.-|+.=..
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~---g--~lTlL~qd~~GLQV~~~-----~g---~Wi~V~p~pgalVVNiGD~Le~ 275 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDF---G--SLTILLQSSQGLQIMDC-----NK---NWVCVPYIEGALIVQLGDQVEV 275 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCC---C--ceEEEecCCCeeeEEeC-----CC---CEEECCCCCCeEEEEccHHHHH
Confidence 4668999752 256788884 2 455555 2222222111 11 2477888899999999988777
Q ss_pred cc--------ccccC-CCCCeEEEEeeec
Q 006795 398 AK--------HAISS-IRKQRILVTFTKS 417 (630)
Q Consensus 398 Wk--------HgIpk-~r~rRISLTFRrV 417 (630)
|. |.+.. ....|+||.|.-.
T Consensus 276 ~TNG~~kSt~HRVv~~~~~~R~Si~~F~~ 304 (357)
T PLN02904 276 MSNGIYKSVVHRVTVNKDYKRLSFASLHS 304 (357)
T ss_pred HhCCeeeccCCcccCCCCCCEEEEEEeec
Confidence 74 44432 3467999999743
No 29
>PLN02947 oxidoreductase
Probab=28.60 E-value=1.6e+02 Score=32.47 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=49.6
Q ss_pred EEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cc-eeeeeeeccCCCCCCCCcceEEEEecCCcEEEecccccc
Q 006795 325 SCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSAD 396 (630)
Q Consensus 325 qcLIN~Y~pG------dgI~PHvD~p~FG~PIvsLSL-Se-cvM~Fgr~~~~d~~gd~~~~~~L~Lp~GSLLVMsGeAR~ 396 (630)
.+.+|+|.+- -|+++|.|- .++||.+ .+ .-+...+ .| +=+.|.-.+|+++|.-|+.=.
T Consensus 226 ~lrln~YPp~p~~~~~~G~~~HTD~-----g~lTlL~Qd~v~GLQV~~------~g---~Wi~V~p~pga~VVNvGD~Lq 291 (374)
T PLN02947 226 MMVVNCYPACPEPELTLGMPPHSDY-----GFLTLLLQDEVEGLQIMH------AG---RWVTVEPIPGSFVVNVGDHLE 291 (374)
T ss_pred eeeeecCCCCCCcccccCCCCccCC-----CceEEEEecCCCCeeEeE------CC---EEEeCCCCCCeEEEEeCceee
Confidence 4568999752 257788884 3566655 22 1122211 11 236677778888888888777
Q ss_pred ccc--------cccc-CCCCCeEEEEeeecc
Q 006795 397 IAK--------HAIS-SIRKQRILVTFTKSQ 418 (630)
Q Consensus 397 ~Wk--------HgIp-k~r~rRISLTFRrV~ 418 (630)
.|. |.+- +....|+||.|.-.-
T Consensus 292 ~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P 322 (374)
T PLN02947 292 IFSNGRYKSVLHRVRVNSTKPRISVASLHSL 322 (374)
T ss_pred eeeCCEEeccccccccCCCCCEEEEEEEecC
Confidence 775 4443 235679999996543
No 30
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=24.79 E-value=85 Score=29.30 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.1
Q ss_pred CceEEecCCCCHHHHHHHHHHHHhh
Q 006795 221 DGLKLYEEVSGNSEVSKLVSLVNDL 245 (630)
Q Consensus 221 pGL~l~pdFLS~eEe~kLLs~I~EL 245 (630)
.|..+++++|+.+|.++|.+.+.++
T Consensus 4 ~Gyvvi~~~l~~~~~~~l~~~~~~~ 28 (211)
T PF05721_consen 4 DGYVVIRNVLSPEEVERLREELDRL 28 (211)
T ss_dssp HSEEEETTSS-HHHHHHHHHHHHHH
T ss_pred CcEEEECCcCCHHHHHHHHHHHHHH
Confidence 3899999999999999999999876
No 31
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=23.95 E-value=1.8e+02 Score=31.68 Aligned_cols=80 Identities=14% Similarity=0.224 Sum_probs=49.5
Q ss_pred CEEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cc-eeeeeeeccCCCCCCCCcceEEEEecCCcEEEeccccc
Q 006795 324 DSCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSA 395 (630)
Q Consensus 324 NqcLIN~Y~pG------dgI~PHvD~p~FG~PIvsLSL-Se-cvM~Fgr~~~~d~~gd~~~~~~L~Lp~GSLLVMsGeAR 395 (630)
..+.+|+|.+- -++++|.|- | .+||.+ .+ --+...+ .| +=+.|.-.+|+|+|--|+.=
T Consensus 197 ~~lrl~~YPp~~~~~~~~G~~~HtD~---g--~lTlL~Qd~v~GLQV~~------~g---~Wi~V~p~pgalvVNiGD~L 262 (348)
T PLN02912 197 QHMAINYYPPCPQPELTYGLPGHKDA---N--LITVLLQDEVSGLQVFK------DG---KWIAVNPIPNTFIVNLGDQM 262 (348)
T ss_pred ceeeeeecCCCCChhhcCCcCCCcCC---C--ceEEEEECCCCceEEEE------CC---cEEECCCcCCeEEEEcCHHH
Confidence 45678999752 256788874 2 555555 22 1122221 11 24677778899999988877
Q ss_pred cccc--------cccc-CCCCCeEEEEeeec
Q 006795 396 DIAK--------HAIS-SIRKQRILVTFTKS 417 (630)
Q Consensus 396 ~~Wk--------HgIp-k~r~rRISLTFRrV 417 (630)
..|. |.|- +....|+||.|-.-
T Consensus 263 ~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~ 293 (348)
T PLN02912 263 QVISNDKYKSVLHRAVVNTDKERISIPTFYC 293 (348)
T ss_pred HHHhCCEEEcccccccCCCCCCEEEEEEEec
Confidence 6764 4442 23567999999654
No 32
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=23.06 E-value=1.3e+02 Score=32.30 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=44.7
Q ss_pred CEEEEeccC-CC--CCCCCCCCCCCCCCCEEEEEc-CceeeeeeeccCCCCC----------CCCcceEEEEecCCcEEE
Q 006795 324 DSCIVDVFN-EG--DHSQPHISPSWFGRPVCILFL-TECDMTFGRMIGIDHP----------GDYRGTLRLSVAPGSLLV 389 (630)
Q Consensus 324 NqcLIN~Y~-pG--dgI~PHvD~p~FG~PIvsLSL-SecvM~Fgr~~~~d~~----------gd~~~~~~L~Lp~GSLLV 389 (630)
-.|.+|.|- ++ ++.++|.|.. -+++|=| +...+.+......... ........+.|.+|++|.
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~----dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LY 187 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDH----DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLY 187 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SS----EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEE
T ss_pred cccceEEEecCCCCCCccCEECCc----ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEE
Confidence 579999994 44 4899999863 3555666 6777777762110000 011236789999999998
Q ss_pred ecccccccccccccCCCCCeEEEEee
Q 006795 390 MQGKSADIAKHAISSIRKQRILVTFT 415 (630)
Q Consensus 390 MsGeAR~~WkHgIpk~r~rRISLTFR 415 (630)
|=-- |-|...... .=++|||.
T Consensus 188 lPrG----~~H~~~~~~-~S~hltv~ 208 (319)
T PF08007_consen 188 LPRG----WWHQAVTTD-PSLHLTVG 208 (319)
T ss_dssp E-TT-----EEEEEESS--EEEEEEE
T ss_pred ECCC----ccCCCCCCC-CceEEEEe
Confidence 8432 344444433 55666665
No 33
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=22.81 E-value=5e+02 Score=32.04 Aligned_cols=41 Identities=37% Similarity=0.704 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCCCCccccCCCCCCCC
Q 006795 432 SPGIAPSPHWGPPPGRPPNHIRHPTGPKHFAPIPTTGVLPA 472 (630)
Q Consensus 432 ~p~~~~~~~w~~~~~r~~~~~~h~~~pkh~~~~~~~~v~p~ 472 (630)
.|...++..|.++++=.||...-+..|---+|-|-.|++|-
T Consensus 601 ~Ppa~p~~~~~ppPgf~PnpPpP~~~Pg~np~~pPpg~~pP 641 (894)
T KOG0132|consen 601 EPPAFPGPMWHPPPGFVPNPPPPPLRPGYNPYPPPPGFMPP 641 (894)
T ss_pred CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCC
Confidence 34456677888887777766555555543336666666654
No 34
>PRK08304 stage V sporulation protein AD; Validated
Probab=22.35 E-value=39 Score=37.13 Aligned_cols=28 Identities=36% Similarity=0.638 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHhhhhhcC-CCCchhHHHH
Q 006795 25 AAANAIIDTLCHHLRVIG-EPGEYDFAIN 52 (630)
Q Consensus 25 aaanaiid~l~~Hl~~~~-~~~eyd~v~~ 52 (630)
|-|.|-.|.+++||++.| .|..||.++.
T Consensus 205 aMapAa~dti~~h~~d~~~~~~~yDli~t 233 (337)
T PRK08304 205 AMAPAAADTIQQHFKDTGRSPEDYDLIVT 233 (337)
T ss_pred hhhHHHHHHHHHHHHHcCCChhhccEEEE
Confidence 668899999999999997 9999999864
No 35
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=22.25 E-value=2.1e+02 Score=30.05 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=48.4
Q ss_pred EEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cc-eeeeeeeccCCCCCCCCcceEEEEecCCcEEEeccccccc
Q 006795 326 CIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADI 397 (630)
Q Consensus 326 cLIN~Y~pG------dgI~PHvD~p~FG~PIvsLSL-Se-cvM~Fgr~~~~d~~gd~~~~~~L~Lp~GSLLVMsGeAR~~ 397 (630)
+-+|+|.+- -++++|.|- | .+||.+ .+ .-+...+ .| +=+.|.-.+|+++|.-|+.=..
T Consensus 118 lrl~~YP~~~~~~~~~g~~~HtD~---g--~lTlL~qd~v~GLqV~~------~g---~Wi~V~p~p~a~vVNiGD~l~~ 183 (262)
T PLN03001 118 ITVSYYPPCPQPELTLGLQSHSDF---G--AITLLIQDDVEGLQLLK------DA---EWLMVPPISDAILIIIADQTEI 183 (262)
T ss_pred heeecCCCCCCcccccCCcCCcCC---C--eeEEEEeCCCCceEEee------CC---eEEECCCCCCcEEEEccHHHHH
Confidence 468888541 256788883 2 555555 22 1233321 11 2356777889999999998888
Q ss_pred cc--------ccccC-CCCCeEEEEeeec
Q 006795 398 AK--------HAISS-IRKQRILVTFTKS 417 (630)
Q Consensus 398 Wk--------HgIpk-~r~rRISLTFRrV 417 (630)
|. |.+-. ....|+||.|-..
T Consensus 184 ~tng~~~S~~HRVv~~~~~~R~Sia~F~~ 212 (262)
T PLN03001 184 ITNGNYKSAQHRAIANANKARLSVATFHD 212 (262)
T ss_pred HhCCccccccceEEcCCCCCEEEEEEEEc
Confidence 87 44432 3467999998643
No 36
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=21.69 E-value=40 Score=36.86 Aligned_cols=28 Identities=36% Similarity=0.642 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHhhhhhcC-CCCchhHHHH
Q 006795 25 AAANAIIDTLCHHLRVIG-EPGEYDFAIN 52 (630)
Q Consensus 25 aaanaiid~l~~Hl~~~~-~~~eyd~v~~ 52 (630)
|-|.|-.|.+.+||++.| .|..||+++.
T Consensus 200 AMAPAA~dTI~~h~~D~g~~p~dYDlIvT 228 (329)
T PF07451_consen 200 AMAPAAADTIEQHFKDTGRSPDDYDLIVT 228 (329)
T ss_dssp HHHHHHHHHHHHHHHHCT--GGG-SEEEE
T ss_pred hHhHHHHHHHHHHHHHhCCChhhcCeEEe
Confidence 678899999999999998 9999998864
No 37
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=21.64 E-value=2.1e+02 Score=30.89 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=50.3
Q ss_pred EEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cce--eeeeeeccCCCCCCCCcceEEEEecCCcEEEeccccc
Q 006795 325 SCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TEC--DMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSA 395 (630)
Q Consensus 325 qcLIN~Y~pG------dgI~PHvD~p~FG~PIvsLSL-Sec--vM~Fgr~~~~d~~gd~~~~~~L~Lp~GSLLVMsGeAR 395 (630)
.+-+|.|.+- -++.+|.|- .++||.+ .+. -+...+ .| +=+.|...+|+|+|.-|+.=
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~-----g~lTlL~qd~~v~GLQV~~------~g---~Wi~V~p~pg~lvVNiGD~l 224 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDA-----GGIILLFQDDKVSGLQLLK------DG---EWVDVPPMRHSIVVNLGDQL 224 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCC-----CeEEEEEecCCCCCcCccc------CC---eEEECCCCCCeEEEEeCHHH
Confidence 4568889641 256788874 2556555 221 122211 11 24677888899999999998
Q ss_pred ccccccccC---------CCCCeEEEEeeec
Q 006795 396 DIAKHAISS---------IRKQRILVTFTKS 417 (630)
Q Consensus 396 ~~WkHgIpk---------~r~rRISLTFRrV 417 (630)
..|..+.-+ ....|+||.|-.-
T Consensus 225 ~~~Tng~~kS~~HRVv~~~~~~R~Si~~F~~ 255 (321)
T PLN02299 225 EVITNGKYKSVMHRVVAQTDGNRMSIASFYN 255 (321)
T ss_pred HHHhCCceecccceeecCCCCCEEEEEEEec
Confidence 888755444 3457999998654
No 38
>PRK12404 stage V sporulation protein AD; Provisional
Probab=20.96 E-value=43 Score=36.80 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHhhhhhcC-CCCchhHHHH
Q 006795 25 AAANAIIDTLCHHLRVIG-EPGEYDFAIN 52 (630)
Q Consensus 25 aaanaiid~l~~Hl~~~~-~~~eyd~v~~ 52 (630)
|-|.|-.|.+++||++.| .|..||.++.
T Consensus 203 aMAPAA~dti~~h~~d~~~~~~~yDlI~T 231 (334)
T PRK12404 203 AMAPAAVDTIEAHLRDRQIDASYYDLIVT 231 (334)
T ss_pred hhhHHHHHHHHHHHHHhCCChhhccEEEE
Confidence 678899999999999998 9999999864
No 39
>PLN02997 flavonol synthase
Probab=20.81 E-value=2.6e+02 Score=30.29 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=49.7
Q ss_pred EEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cce-eeeeeeccCCCCCCCCcceEEEEecCCcEEEecccccc
Q 006795 325 SCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TEC-DMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSAD 396 (630)
Q Consensus 325 qcLIN~Y~pG------dgI~PHvD~p~FG~PIvsLSL-Sec-vM~Fgr~~~~d~~gd~~~~~~L~Lp~GSLLVMsGeAR~ 396 (630)
.+-+|+|.+- -++++|.|- .++||.+ .+. -+...+ +| +=+.|.-.+|+++|.-|+.=.
T Consensus 184 ~lRl~~YP~~~~~~~~~g~~~HTD~-----g~lTlL~Qd~v~GLQV~~------~g---~Wi~V~p~pgalvVNiGD~Le 249 (325)
T PLN02997 184 VLRVNFYPPTQDTELVIGAAAHSDM-----GAIALLIPNEVPGLQAFK------DE---QWLDLNYINSAVVVIIGDQLM 249 (325)
T ss_pred eeeeecCCCCCCcccccCccCccCC-----CceEEEecCCCCCEEEeE------CC---cEEECCCCCCeEEEEechHHH
Confidence 4568999652 257788884 2555555 221 122221 11 246777789999999998887
Q ss_pred ccc--------ccccCC-CCCeEEEEeeec
Q 006795 397 IAK--------HAISSI-RKQRILVTFTKS 417 (630)
Q Consensus 397 ~Wk--------HgIpk~-r~rRISLTFRrV 417 (630)
.|. |.|... ...|+||.|-.-
T Consensus 250 ~~TNG~~kSt~HRVv~~~~~~R~Si~fF~~ 279 (325)
T PLN02997 250 RMTNGRFKNVLHRAKTDKERLRISWPVFVA 279 (325)
T ss_pred HHhCCccccccceeeCCCCCCEEEEEEEec
Confidence 776 555432 346999998544
No 40
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=20.13 E-value=3.2e+02 Score=30.02 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=50.9
Q ss_pred CEEEEeccCC--C----CCCCCCCCCCCCCCCEEEEEc-Cc-eeeeeeeccCCCCCCCCcceEEEEecCCcEEEeccccc
Q 006795 324 DSCIVDVFNE--G----DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSA 395 (630)
Q Consensus 324 NqcLIN~Y~p--G----dgI~PHvD~p~FG~PIvsLSL-Se-cvM~Fgr~~~~d~~gd~~~~~~L~Lp~GSLLVMsGeAR 395 (630)
..+.+|+|.+ . -++++|.|- ..+||.+ .+ .-+...+.. + ..=+.|.-.+|+|+|.-|+.=
T Consensus 195 ~~lrl~~YP~~~~~~~~~G~~~HTD~-----g~lTlL~Qd~v~GLQV~~~~-----~--~~Wi~Vpp~pgalVVNiGD~L 262 (358)
T PLN02515 195 QKVVVNYYPKCPQPDLTLGLKRHTDP-----GTITLLLQDQVGGLQATRDG-----G--KTWITVQPVEGAFVVNLGDHG 262 (358)
T ss_pred ceEEEeecCCCCChhhccCCCCCCCC-----CeEEEEecCCCCceEEEECC-----C--CeEEECCCCCCeEEEEccHHH
Confidence 3567999974 1 257788874 3566655 22 223332210 0 124677888999999999877
Q ss_pred cccc--------ccc-cCCCCCeEEEEeeec
Q 006795 396 DIAK--------HAI-SSIRKQRILVTFTKS 417 (630)
Q Consensus 396 ~~Wk--------HgI-pk~r~rRISLTFRrV 417 (630)
..|. |.| ......|+||.|.--
T Consensus 263 ~~~TNG~~kSt~HRVv~~~~~~R~Si~~F~~ 293 (358)
T PLN02515 263 HYLSNGRFKNADHQAVVNSNCSRLSIATFQN 293 (358)
T ss_pred HHHhCCeeeeecceEECCCCCCEEEEEEEec
Confidence 7775 443 223467999998654
No 41
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=20.07 E-value=47 Score=36.41 Aligned_cols=28 Identities=32% Similarity=0.507 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHhhhhhcC-CCCchhHHHH
Q 006795 25 AAANAIIDTLCHHLRVIG-EPGEYDFAIN 52 (630)
Q Consensus 25 aaanaiid~l~~Hl~~~~-~~~eyd~v~~ 52 (630)
|-|.|-.|.+++||++.| .|..||.++.
T Consensus 199 amapaa~dti~~h~~d~~~~~~~yd~i~t 227 (327)
T TIGR02845 199 AMAPAAADTIEAHFKDTGRSVDDYDLIVT 227 (327)
T ss_pred hhhHHHHHHHHHHHHHcCCChhhccEEEe
Confidence 668899999999999998 9999999864
Done!