Query 006796
Match_columns 630
No_of_seqs 17 out of 19
Neff 2.4
Searched_HMMs 46136
Date Thu Mar 28 14:37:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 95.5 11 0.00024 48.1 29.3 385 29-423 1296-1734(1930)
2 PRK09039 hypothetical protein; 95.3 2.2 4.7E-05 44.8 19.1 86 67-159 65-150 (343)
3 PF00038 Filament: Intermediat 92.7 12 0.00026 37.4 25.5 73 30-102 50-122 (312)
4 TIGR00606 rad50 rad50. This fa 92.5 13 0.00029 44.9 20.9 40 31-70 228-267 (1311)
5 PRK04863 mukB cell division pr 92.0 38 0.00083 42.5 24.0 43 25-70 284-326 (1486)
6 PRK02224 chromosome segregatio 91.7 28 0.00061 39.7 27.0 27 202-228 658-684 (880)
7 PF10174 Cast: RIM-binding pro 91.7 22 0.00047 41.9 20.6 74 36-116 62-140 (775)
8 PRK11637 AmiB activator; Provi 91.3 22 0.00049 37.7 22.6 32 26-57 39-70 (428)
9 KOG0612 Rho-associated, coiled 90.7 52 0.0011 40.9 24.7 139 29-170 467-609 (1317)
10 PRK02224 chromosome segregatio 89.8 42 0.00091 38.3 25.9 26 205-230 483-508 (880)
11 PF12128 DUF3584: Protein of u 89.4 59 0.0013 39.5 25.5 112 14-132 587-699 (1201)
12 PRK04778 septation ring format 89.0 42 0.00092 37.4 21.6 38 73-110 300-337 (569)
13 COG1196 Smc Chromosome segrega 88.7 64 0.0014 39.0 25.6 25 391-415 991-1015(1163)
14 PF09789 DUF2353: Uncharacteri 88.6 6.7 0.00014 41.8 12.3 158 360-530 2-227 (319)
15 PF12718 Tropomyosin_1: Tropom 88.2 23 0.0005 33.3 16.1 123 104-253 7-129 (143)
16 TIGR02169 SMC_prok_A chromosom 87.5 60 0.0013 37.4 30.6 15 599-613 1071-1085(1164)
17 PHA02562 46 endonuclease subun 87.1 47 0.001 35.7 23.0 24 143-167 259-282 (562)
18 TIGR02168 SMC_prok_B chromosom 85.1 77 0.0017 36.3 29.1 29 30-58 673-701 (1179)
19 PF00261 Tropomyosin: Tropomyo 84.9 43 0.00094 33.2 15.1 51 114-164 179-229 (237)
20 PF08614 ATG16: Autophagy prot 84.9 6.2 0.00013 37.9 9.0 119 26-158 30-170 (194)
21 PRK10884 SH3 domain-containing 84.7 14 0.00031 36.8 11.7 24 22-45 88-111 (206)
22 PF05667 DUF812: Protein of un 84.4 83 0.0018 36.1 21.4 88 211-301 447-534 (594)
23 PF00038 Filament: Intermediat 84.2 48 0.001 33.2 28.3 247 7-291 9-278 (312)
24 PRK04863 mukB cell division pr 83.6 60 0.0013 40.9 18.4 74 87-160 265-342 (1486)
25 KOG0995 Centromere-associated 83.1 97 0.0021 35.9 22.9 177 21-259 215-391 (581)
26 PF10168 Nup88: Nuclear pore c 82.9 14 0.0003 42.9 12.1 28 266-293 683-710 (717)
27 PF01920 Prefoldin_2: Prefoldi 82.1 22 0.00048 29.9 10.3 84 116-228 3-86 (106)
28 PF07888 CALCOCO1: Calcium bin 81.6 59 0.0013 37.2 16.1 147 7-164 264-431 (546)
29 KOG0161 Myosin class II heavy 81.1 1.9E+02 0.0041 37.8 32.4 87 76-162 1428-1514(1930)
30 PRK11637 AmiB activator; Provi 81.0 83 0.0018 33.6 16.5 92 202-297 94-196 (428)
31 PRK03918 chromosome segregatio 80.7 1.1E+02 0.0024 34.9 27.8 51 106-156 233-283 (880)
32 PF10224 DUF2205: Predicted co 80.6 8.1 0.00018 34.0 7.2 58 381-438 13-70 (80)
33 TIGR02168 SMC_prok_B chromosom 80.1 1.2E+02 0.0025 34.8 28.1 7 517-523 1096-1102(1179)
34 PF09726 Macoilin: Transmembra 79.0 1.4E+02 0.003 35.0 22.0 91 123-246 543-633 (697)
35 PF08172 CASP_C: CASP C termin 78.3 20 0.00044 36.6 10.4 42 115-156 83-124 (248)
36 TIGR02169 SMC_prok_A chromosom 78.0 1.4E+02 0.003 34.5 28.4 20 206-225 953-972 (1164)
37 PF12718 Tropomyosin_1: Tropom 74.9 76 0.0017 29.9 13.4 111 25-155 26-138 (143)
38 COG1196 Smc Chromosome segrega 74.8 2.1E+02 0.0045 34.9 33.0 58 29-93 669-726 (1163)
39 PF09728 Taxilin: Myosin-like 74.5 1.2E+02 0.0026 32.0 15.3 41 32-72 41-81 (309)
40 KOG0999 Microtubule-associated 74.4 1.8E+02 0.004 34.1 19.7 217 23-265 4-241 (772)
41 KOG0250 DNA repair protein RAD 73.8 2.4E+02 0.0051 35.1 24.4 146 73-248 306-452 (1074)
42 KOG4643 Uncharacterized coiled 70.7 2.8E+02 0.006 34.6 21.2 116 32-157 203-326 (1195)
43 PF06160 EzrA: Septation ring 70.3 1.9E+02 0.0041 32.5 20.0 62 495-559 464-525 (560)
44 COG1579 Zn-ribbon protein, pos 68.0 1.6E+02 0.0034 30.7 15.9 177 119-346 39-226 (239)
45 TIGR00606 rad50 rad50. This fa 66.5 3.2E+02 0.007 33.7 29.9 101 119-229 495-602 (1311)
46 PF04156 IncA: IncA protein; 64.3 1.3E+02 0.0028 28.3 15.4 58 109-166 86-143 (191)
47 PF04849 HAP1_N: HAP1 N-termin 64.2 47 0.001 35.6 9.5 32 36-70 215-246 (306)
48 PF06657 Cep57_MT_bd: Centroso 64.0 32 0.00068 29.8 6.9 54 199-252 12-74 (79)
49 PF05308 Mito_fiss_reg: Mitoch 62.8 6.5 0.00014 40.4 3.0 28 195-223 114-141 (253)
50 PF09738 DUF2051: Double stran 62.8 99 0.0021 32.9 11.5 85 64-164 83-172 (302)
51 PF12325 TMF_TATA_bd: TATA ele 61.9 1.4E+02 0.003 27.9 11.8 85 31-140 27-111 (120)
52 PF05911 DUF869: Plant protein 60.0 99 0.0022 36.7 12.0 59 92-153 111-169 (769)
53 KOG0804 Cytoplasmic Zn-finger 59.9 1E+02 0.0022 35.0 11.5 68 84-156 352-420 (493)
54 cd07596 BAR_SNX The Bin/Amphip 59.4 1.5E+02 0.0032 27.4 18.7 166 3-175 12-192 (218)
55 PF05557 MAD: Mitotic checkpoi 59.1 64 0.0014 36.9 10.1 124 123-262 501-636 (722)
56 PRK03918 chromosome segregatio 59.0 3.3E+02 0.0071 31.3 27.2 30 105-134 606-635 (880)
57 PF06005 DUF904: Protein of un 56.9 88 0.0019 26.9 8.3 45 384-428 18-62 (72)
58 PF10186 Atg14: UV radiation r 56.5 2E+02 0.0044 28.1 14.9 45 115-159 60-104 (302)
59 PF05064 Nsp1_C: Nsp1-like C-t 56.4 36 0.00079 30.9 6.3 28 78-106 28-55 (116)
60 PF04156 IncA: IncA protein; 56.0 1.8E+02 0.0039 27.3 14.8 27 134-160 160-186 (191)
61 cd07666 BAR_SNX7 The Bin/Amphi 55.6 2.2E+02 0.0048 29.4 12.3 56 89-154 148-210 (243)
62 KOG0994 Extracellular matrix g 54.9 3.3E+02 0.0072 34.7 15.2 58 106-163 1691-1748(1758)
63 PF05667 DUF812: Protein of un 54.2 4E+02 0.0087 30.8 17.6 103 117-248 327-435 (594)
64 PF15397 DUF4618: Domain of un 52.7 3E+02 0.0066 29.0 14.4 86 126-229 7-106 (258)
65 PF08385 DHC_N1: Dynein heavy 52.3 3.3E+02 0.0071 29.3 13.5 35 113-147 219-253 (579)
66 KOG0996 Structural maintenance 51.1 6.3E+02 0.014 32.2 25.2 80 69-158 451-533 (1293)
67 PF03962 Mnd1: Mnd1 family; I 50.8 2.2E+02 0.0047 28.1 11.0 50 113-165 105-154 (188)
68 KOG3215 Uncharacterized conser 50.5 2.6E+02 0.0056 29.1 11.7 95 29-138 28-123 (222)
69 PF15070 GOLGA2L5: Putative go 50.3 3.7E+02 0.008 31.3 14.2 124 28-169 88-215 (617)
70 KOG0977 Nuclear envelope prote 50.1 3.1E+02 0.0067 31.8 13.4 97 118-229 42-138 (546)
71 PLN02939 transferase, transfer 50.1 5.8E+02 0.013 31.6 16.2 31 99-129 151-181 (977)
72 PF01486 K-box: K-box region; 48.8 16 0.00035 31.7 2.8 42 18-59 59-100 (100)
73 PF07083 DUF1351: Protein of u 48.8 2.9E+02 0.0063 27.6 12.2 109 107-225 60-169 (215)
74 KOG2991 Splicing regulator [RN 48.7 3.8E+02 0.0083 29.0 15.1 136 107-256 125-267 (330)
75 cd00632 Prefoldin_beta Prefold 48.1 1.9E+02 0.0042 25.4 10.6 45 178-227 42-86 (105)
76 PF14197 Cep57_CLD_2: Centroso 47.2 1.4E+02 0.0031 25.4 8.0 27 31-57 2-28 (69)
77 TIGR02231 conserved hypothetic 46.6 2.2E+02 0.0047 31.3 11.4 71 81-151 97-171 (525)
78 PF07889 DUF1664: Protein of u 45.6 2.2E+02 0.0049 27.0 9.8 86 194-297 27-122 (126)
79 PF06005 DUF904: Protein of un 45.4 1.6E+02 0.0035 25.3 8.1 59 220-278 6-67 (72)
80 PRK10884 SH3 domain-containing 45.2 92 0.002 31.2 7.6 43 25-70 116-158 (206)
81 PF04111 APG6: Autophagy prote 45.1 4E+02 0.0086 28.1 12.6 19 208-226 110-128 (314)
82 PF08317 Spc7: Spc7 kinetochor 45.1 3.9E+02 0.0084 28.0 16.1 98 28-135 143-240 (325)
83 COG2433 Uncharacterized conser 45.0 2.3E+02 0.0051 33.3 11.6 87 30-152 418-508 (652)
84 PF07047 OPA3: Optic atrophy 3 45.0 38 0.00083 31.4 4.7 34 106-139 100-133 (134)
85 KOG2685 Cystoskeletal protein 44.0 5.3E+02 0.011 29.2 16.9 107 176-282 192-303 (421)
86 PHA02562 46 endonuclease subun 43.8 4.5E+02 0.0098 28.4 23.2 11 161-171 335-345 (562)
87 TIGR02338 gimC_beta prefoldin, 43.6 2.4E+02 0.0052 25.1 9.8 93 36-155 12-104 (110)
88 TIGR00309 V_ATPase_subD H(+)-t 43.3 3.4E+02 0.0074 26.8 12.5 37 95-136 19-55 (209)
89 PF11629 Mst1_SARAH: C termina 42.4 76 0.0016 26.3 5.4 38 240-277 9-46 (49)
90 PF04111 APG6: Autophagy prote 42.3 1.8E+02 0.004 30.6 9.6 34 105-138 86-119 (314)
91 PF08172 CASP_C: CASP C termin 41.9 4.2E+02 0.009 27.4 12.1 34 121-154 2-35 (248)
92 cd00632 Prefoldin_beta Prefold 40.9 2.5E+02 0.0055 24.7 10.4 55 36-102 8-62 (105)
93 smart00502 BBC B-Box C-termina 40.7 2.2E+02 0.0048 23.9 11.6 114 116-244 5-124 (127)
94 PF07139 DUF1387: Protein of u 40.3 5.2E+02 0.011 28.1 13.2 46 25-70 148-194 (302)
95 PF07200 Mod_r: Modifier of ru 39.9 3E+02 0.0065 25.2 10.2 39 30-71 30-68 (150)
96 PF13851 GAS: Growth-arrest sp 39.8 3.9E+02 0.0085 26.5 15.2 116 31-172 25-141 (201)
97 PF01576 Myosin_tail_1: Myosin 39.5 9.8 0.00021 44.6 0.0 120 29-158 238-368 (859)
98 PF00170 bZIP_1: bZIP transcri 39.1 1.1E+02 0.0024 24.7 5.9 36 119-154 27-62 (64)
99 PF10186 Atg14: UV radiation r 38.0 4E+02 0.0086 26.1 17.0 26 36-61 22-47 (302)
100 PRK09343 prefoldin subunit bet 37.9 3.2E+02 0.007 25.0 10.1 94 36-156 16-109 (121)
101 PF01017 STAT_alpha: STAT prot 37.4 2.8E+02 0.006 26.8 9.3 91 28-135 3-99 (182)
102 PF12240 Angiomotin_C: Angiomo 37.2 2.9E+02 0.0063 28.5 9.7 106 29-136 30-154 (205)
103 PRK09039 hypothetical protein; 36.5 5.6E+02 0.012 27.4 16.4 34 25-58 44-84 (343)
104 PF07352 Phage_Mu_Gam: Bacteri 35.6 2.2E+02 0.0049 26.5 8.2 79 113-198 5-84 (149)
105 PF05911 DUF869: Plant protein 35.0 8.8E+02 0.019 29.2 17.1 123 27-156 530-662 (769)
106 PF04849 HAP1_N: HAP1 N-termin 34.3 6.4E+02 0.014 27.4 16.7 28 36-66 162-189 (306)
107 PF09403 FadA: Adhesion protei 34.2 4.1E+02 0.009 25.2 11.1 59 27-91 27-90 (126)
108 PF09304 Cortex-I_coil: Cortex 34.1 4.1E+02 0.0088 25.1 10.0 37 114-150 54-90 (107)
109 KOG1853 LIS1-interacting prote 33.7 3.6E+02 0.0078 29.2 10.1 42 112-153 28-73 (333)
110 KOG2129 Uncharacterized conser 33.3 8.1E+02 0.017 28.3 14.9 174 199-446 45-237 (552)
111 PF15035 Rootletin: Ciliary ro 32.8 5E+02 0.011 25.7 10.4 54 14-70 59-114 (182)
112 KOG0933 Structural maintenance 32.5 1.1E+03 0.025 29.7 24.6 22 274-295 1003-1024(1174)
113 PRK00373 V-type ATP synthase s 32.5 3.9E+02 0.0085 26.2 9.6 37 95-136 21-57 (204)
114 PF15066 CAGE1: Cancer-associa 32.2 1.7E+02 0.0037 33.6 7.8 69 361-434 366-440 (527)
115 KOG0971 Microtubule-associated 32.2 1.1E+03 0.024 29.8 14.5 71 33-106 402-487 (1243)
116 PF03148 Tektin: Tektin family 32.2 6.7E+02 0.015 27.0 17.9 186 206-426 73-286 (384)
117 smart00787 Spc7 Spc7 kinetocho 31.9 6.6E+02 0.014 26.8 14.9 124 28-155 138-262 (312)
118 PF15397 DUF4618: Domain of un 31.8 6.4E+02 0.014 26.7 17.5 26 203-228 199-224 (258)
119 cd07651 F-BAR_PombeCdc15_like 31.7 5.1E+02 0.011 25.5 14.2 114 5-124 8-141 (236)
120 PHA02047 phage lambda Rz1-like 31.5 2E+02 0.0042 26.9 6.8 57 205-286 28-84 (101)
121 PF10473 CENP-F_leu_zip: Leuci 31.5 4.9E+02 0.011 25.2 13.8 42 26-70 23-64 (140)
122 PF05529 Bap31: B-cell recepto 30.8 3.1E+02 0.0067 26.3 8.4 38 111-148 154-191 (192)
123 PF06156 DUF972: Protein of un 30.8 1.4E+02 0.0031 27.3 5.9 44 381-425 13-56 (107)
124 PF10474 DUF2451: Protein of u 30.3 5.5E+02 0.012 26.1 10.5 97 167-272 53-154 (234)
125 KOG0996 Structural maintenance 30.2 1.3E+03 0.028 29.7 27.9 154 125-295 858-1021(1293)
126 PF01813 ATP-synt_D: ATP synth 30.1 2.9E+02 0.0062 26.7 8.2 37 95-136 11-47 (196)
127 KOG0933 Structural maintenance 29.9 1.2E+03 0.027 29.4 26.2 50 27-77 677-728 (1174)
128 PF10267 Tmemb_cc2: Predicted 29.7 8.2E+02 0.018 27.3 13.1 122 29-175 228-357 (395)
129 PF04977 DivIC: Septum formati 29.5 73 0.0016 25.6 3.5 35 26-60 16-50 (80)
130 PF01025 GrpE: GrpE; InterPro 29.5 96 0.0021 28.5 4.7 54 205-258 12-67 (165)
131 KOG4687 Uncharacterized coiled 29.3 1.4E+02 0.0029 32.5 6.3 44 356-402 19-62 (389)
132 PF01166 TSC22: TSC-22/dip/bun 29.0 45 0.00097 28.4 2.2 32 208-240 11-42 (59)
133 KOG0804 Cytoplasmic Zn-finger 28.6 9.3E+02 0.02 27.8 12.6 75 76-156 370-445 (493)
134 KOG4674 Uncharacterized conser 28.5 1.6E+03 0.034 30.1 21.5 238 13-285 41-284 (1822)
135 KOG0979 Structural maintenance 28.4 1.3E+03 0.028 29.1 14.6 65 107-174 258-322 (1072)
136 PF13094 CENP-Q: CENP-Q, a CEN 28.0 2.8E+02 0.0061 25.9 7.5 34 196-229 19-52 (160)
137 PF13118 DUF3972: Protein of u 27.6 79 0.0017 30.2 3.8 34 498-531 87-124 (126)
138 PF10174 Cast: RIM-binding pro 27.5 1.2E+03 0.025 28.3 23.1 115 31-159 228-342 (775)
139 PF05266 DUF724: Protein of un 27.4 6.3E+02 0.014 25.2 10.6 70 84-153 87-166 (190)
140 PRK13729 conjugal transfer pil 27.4 1.8E+02 0.0039 33.1 7.1 69 86-162 52-120 (475)
141 KOG1850 Myosin-like coiled-coi 27.3 9.1E+02 0.02 27.0 19.5 121 36-170 48-168 (391)
142 PF08232 Striatin: Striatin fa 27.3 1.3E+02 0.0029 28.1 5.3 55 86-154 7-61 (134)
143 smart00338 BRLZ basic region l 27.3 1.9E+02 0.0042 23.3 5.6 37 119-155 27-63 (65)
144 PF10805 DUF2730: Protein of u 27.2 1.1E+02 0.0024 27.5 4.5 39 202-240 63-106 (106)
145 PF08580 KAR9: Yeast cortical 27.1 1.1E+03 0.024 27.9 14.5 51 205-255 277-329 (683)
146 PF05622 HOOK: HOOK protein; 27.1 21 0.00045 40.6 0.0 93 127-225 327-419 (713)
147 TIGR01005 eps_transp_fam exopo 27.0 1E+03 0.022 27.4 14.5 145 16-161 241-402 (754)
148 PF10779 XhlA: Haemolysin XhlA 26.9 3.8E+02 0.0082 22.4 8.1 47 115-161 3-49 (71)
149 KOG1853 LIS1-interacting prote 26.8 8.5E+02 0.018 26.5 14.1 119 30-156 48-188 (333)
150 KOG1760 Molecular chaperone Pr 26.7 6.1E+02 0.013 24.8 10.9 47 200-255 77-123 (131)
151 PF00170 bZIP_1: bZIP transcri 26.1 1.8E+02 0.004 23.4 5.2 35 392-426 27-61 (64)
152 PF06810 Phage_GP20: Phage min 25.8 1.6E+02 0.0036 28.2 5.7 59 97-156 37-99 (155)
153 PF14552 Tautomerase_2: Tautom 25.7 49 0.0011 28.7 2.0 36 163-198 46-82 (82)
154 COG2900 SlyX Uncharacterized p 25.5 3.1E+02 0.0068 24.3 6.7 51 121-174 4-61 (72)
155 PF09787 Golgin_A5: Golgin sub 25.5 9.8E+02 0.021 26.7 18.7 108 24-136 184-306 (511)
156 KOG0612 Rho-associated, coiled 25.0 1.6E+03 0.034 29.0 22.3 174 104-292 609-803 (1317)
157 PF00992 Troponin: Troponin; 24.7 2.6E+02 0.0055 26.3 6.6 44 353-402 46-89 (132)
158 PF08317 Spc7: Spc7 kinetochor 24.6 8.3E+02 0.018 25.6 12.8 41 112-152 224-264 (325)
159 PF12709 Kinetocho_Slk19: Cent 24.2 2E+02 0.0043 26.1 5.5 40 122-161 46-85 (87)
160 smart00787 Spc7 Spc7 kinetocho 24.0 9E+02 0.019 25.8 11.2 91 204-295 151-248 (312)
161 PTZ00046 rifin; Provisional 24.0 1.4E+02 0.0031 32.7 5.4 26 113-138 65-90 (358)
162 PF12128 DUF3584: Protein of u 23.9 1.5E+03 0.031 28.2 27.9 65 73-137 785-849 (1201)
163 PF12808 Mto2_bdg: Micro-tubul 23.8 1.2E+02 0.0026 25.1 3.8 27 200-226 25-51 (52)
164 PF10481 CENP-F_N: Cenp-F N-te 23.7 7.8E+02 0.017 26.8 10.5 85 107-228 49-133 (307)
165 PF14131 DUF4298: Domain of un 23.6 3.1E+02 0.0067 24.1 6.5 16 176-191 55-70 (90)
166 PF02388 FemAB: FemAB family; 23.5 3.2E+02 0.007 29.4 7.9 49 202-254 240-288 (406)
167 PF14193 DUF4315: Domain of un 23.5 1.9E+02 0.0042 25.7 5.2 38 206-250 3-40 (83)
168 PLN03188 kinesin-12 family pro 23.5 1.7E+03 0.037 28.8 15.6 123 25-160 1077-1239(1320)
169 PF09006 Surfac_D-trimer: Lung 23.1 1.1E+02 0.0025 25.0 3.4 24 206-229 1-24 (46)
170 PF03962 Mnd1: Mnd1 family; I 23.1 5.2E+02 0.011 25.5 8.6 50 176-229 42-94 (188)
171 KOG0963 Transcription factor/C 22.8 1.3E+03 0.029 27.4 19.5 29 202-230 247-275 (629)
172 TIGR03789 pdsO proteobacterial 22.6 2.2E+02 0.0048 29.3 6.2 48 354-402 79-126 (239)
173 PF12711 Kinesin-relat_1: Kine 22.5 1.2E+02 0.0026 27.3 3.8 49 6-58 7-61 (86)
174 PF07106 TBPIP: Tat binding pr 22.1 5.4E+02 0.012 24.2 8.2 27 202-228 114-140 (169)
175 TIGR02338 gimC_beta prefoldin, 22.1 5.4E+02 0.012 22.9 7.8 24 205-228 82-105 (110)
176 COG1711 DNA replication initia 22.0 2.6E+02 0.0055 29.2 6.5 82 203-295 31-112 (223)
177 PF04977 DivIC: Septum formati 22.0 3.2E+02 0.007 21.9 5.9 32 120-151 19-50 (80)
178 TIGR03752 conj_TIGR03752 integ 21.9 4.8E+02 0.01 29.9 9.0 34 115-148 63-96 (472)
179 KOG0971 Microtubule-associated 21.8 1.7E+03 0.037 28.2 20.5 49 11-59 309-357 (1243)
180 PF14235 DUF4337: Domain of un 21.4 7.2E+02 0.016 24.1 9.0 66 71-138 27-93 (157)
181 KOG0977 Nuclear envelope prote 21.1 1.4E+03 0.03 26.8 14.7 126 25-156 61-193 (546)
182 PF04065 Not3: Not1 N-terminal 20.9 2.1E+02 0.0045 29.5 5.7 82 202-297 127-208 (233)
183 PF02183 HALZ: Homeobox associ 20.9 1.9E+02 0.0041 23.0 4.2 38 31-71 2-39 (45)
184 PF06698 DUF1192: Protein of u 20.7 1.2E+02 0.0026 25.6 3.3 37 186-224 12-48 (59)
185 TIGR02894 DNA_bind_RsfA transc 20.7 2.4E+02 0.0051 28.1 5.7 43 384-426 104-146 (161)
186 PF15619 Lebercilin: Ciliary p 20.7 8.6E+02 0.019 24.3 21.6 42 238-279 138-179 (194)
187 PF06632 XRCC4: DNA double-str 20.4 8.2E+02 0.018 26.6 10.1 30 110-139 175-208 (342)
188 TIGR01477 RIFIN variant surfac 20.4 1.7E+02 0.0036 32.2 5.1 27 112-138 67-93 (353)
189 PF12711 Kinesin-relat_1: Kine 20.2 3.6E+02 0.0078 24.4 6.3 57 367-426 9-65 (86)
190 KOG0249 LAR-interacting protei 20.2 1.7E+03 0.036 27.5 14.1 75 205-279 164-252 (916)
191 PF09798 LCD1: DNA damage chec 20.2 3.3E+02 0.0071 32.1 7.6 62 393-455 14-75 (654)
192 cd00890 Prefoldin Prefoldin is 20.1 5.1E+02 0.011 22.5 7.2 103 30-151 2-127 (129)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.51 E-value=11 Score=48.10 Aligned_cols=385 Identities=22% Similarity=0.238 Sum_probs=182.4
Q ss_pred hhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHH-HH
Q 006796 29 KAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME-AE 107 (630)
Q Consensus 29 tA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmE-aE 107 (630)
...++.+|+.++.++..=+|.+++|...+..+=+=+.+|-+-+--+...-.++++++.=--.-++++-+.=+..+.. .|
T Consensus 1296 ~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~e 1375 (1930)
T KOG0161|consen 1296 KQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLE 1375 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777766655443333332222222223334444433333333333333333332 33
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccc---c
Q 006796 108 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK---C 184 (630)
Q Consensus 108 KaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~K---c 184 (630)
-..|.-...-+.+.+.+++++.+...+...++..-.||.++..+.--++....++. |.+-.+...+-.=..|..+ -
T Consensus 1376 elee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~-~le~k~k~f~k~l~e~k~~~e~l 1454 (1930)
T KOG0161|consen 1376 ELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVA-ALEKKQKRFEKLLAEWKKKLEKL 1454 (1930)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445567788899999999999999988888887777665444432222111 2222222222111334433 3
Q ss_pred ccccccccccccccCcchHHHHHHHHHHHH---HHHHHHHHHHhhhhhhHHHHHH-------hHHhHHHHHHh----hhh
Q 006796 185 ACLLLDSAEMWSFNDTSTSKYISALEDELE---KTRSSVENLQSKLRMGLEIENH-------LKKSVRELEKK----IIH 250 (630)
Q Consensus 185 s~LL~Ds~~~WSfn~tStskyisALEeEle---~lr~si~~LQskLR~GLEIEnH-------Lkk~vr~LeKk----qi~ 250 (630)
+..++.....|.=-+|...++-.+|++-++ .++..-.+|++.+.=--.=.+- |++..|.||.. |.-
T Consensus 1455 ~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~a 1534 (1930)
T KOG0161|consen 1455 QAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAA 1534 (1930)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666677667777777666666543 3333333333332210000001 22222333222 111
Q ss_pred hHHHH------HHHHHHHHHhhhhhHHHHHHhhhhcc-----------hhhhhHHHHHHhhhcccccccc-----ccccC
Q 006796 251 SDKFI------SNAIAELRLCHSQLRVHVVNSLEEGR-----------SHIKSISDVIEEKTQHCDDVIR-----GQNTG 308 (630)
Q Consensus 251 ~dk~i------~ngis~Lq~~h~~~R~~Im~lL~ee~-----------s~i~s~v~~ieekl~~~~n~~~-----E~n~~ 308 (630)
++..- ....--++--+.+.|.+|..-|.+-. ..|.++.+.+++..+.+..+.+ |.. .
T Consensus 1535 LeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~d-i 1613 (1930)
T KOG0161|consen 1535 LEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGD-I 1613 (1930)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcc-h
Confidence 11111 11111134446666666666553211 1222233333322211111100 000 0
Q ss_pred CCccccccccccccceeeccCCCCccccCCCCCccchhhhcccCCchHHHHHHH--HHHHHHHH---------hhchHHH
Q 006796 309 TYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQAL--QEKVAALL---------LLSQQEE 377 (630)
Q Consensus 309 ~pq~e~~~~e~ecrDVHvs~d~~p~~~~k~~~p~~~~~~~d~~~d~s~aLAQAL--qEKveALl---------LlSQqeE 377 (630)
+| =+++++.+.-. .....++...-...+|.+.+.+-|-.....+++||.. ..|.+||- +=+..-.
T Consensus 1614 ~e-lE~~ld~ank~---~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Ra 1689 (1930)
T KOG0161|consen 1614 NE-LEIQLDHANKA---NEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERA 1689 (1930)
T ss_pred HH-HHHHHHHHHHh---hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01111211111 1112223333344555555666666666677776542 23444331 2223345
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhh---hhhchHHHHHHHHHHhHHHHHHH
Q 006796 378 RHLLERNVNSALQKKIEELQRNL---FQVTTEKVKALMELAQLKQDYQL 423 (630)
Q Consensus 378 R~llE~~~n~~Lq~~ieeLQrNl---~QVt~EKVkaLmELAqLkq~y~l 423 (630)
|-.+|...+.. .|.++... +..+++|-|.=-+|++|..++..
T Consensus 1690 rr~aE~e~~E~----~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee 1734 (1930)
T KOG0161|consen 1690 RRQAELELEEL----AERVNELNAQNSSLTAEKRKLEAEIAQLQSELEE 1734 (1930)
T ss_pred HHhhHHHHHHH----HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 55666655544 66666655 55788999999999999988765
No 2
>PRK09039 hypothetical protein; Validated
Probab=95.27 E-value=2.2 Score=44.83 Aligned_cols=86 Identities=22% Similarity=0.161 Sum_probs=48.8
Q ss_pred HHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 006796 67 LADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRF 146 (630)
Q Consensus 67 LAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~ 146 (630)
|+++-+-+-+.+.+++..|.=.+....+|=++|+. .+.+-. .......+.+.|+..++.++..+|..-...+.
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~----Le~~~~---~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~ 137 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSAAEAERSR----LQALLA---ELAGAGAAAEGRAGELAQELDSEKQVSARALA 137 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHh---hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 66666666666666666666666665555555541 111100 01112335666777777777777766666666
Q ss_pred hHHHHHHhhHhHH
Q 006796 147 DLEKQEELNESFK 159 (630)
Q Consensus 147 dl~~~~eq~e~~~ 159 (630)
+...+..|.+.+.
T Consensus 138 ~V~~L~~qI~aLr 150 (343)
T PRK09039 138 QVELLNQQIAALR 150 (343)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666433
No 3
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.65 E-value=12 Score=37.41 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcch
Q 006796 30 AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 102 (630)
Q Consensus 30 A~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~s 102 (630)
..++.+|..|...+..++.++-.|+-++.-+..--..+-.-+..+...+..+|.++.=+..-+-.+.+.|...
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~l 122 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDL 122 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHH
Confidence 3466666666677777777777776666655544433333355667777777777777776666666666543
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.52 E-value=13 Score=44.90 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHH
Q 006796 31 GLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 70 (630)
Q Consensus 31 ~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdL 70 (630)
.++..++.++.....|..+-..+++++.+.+.+...+..+
T Consensus 228 ~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l 267 (1311)
T TIGR00606 228 SKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555545455555555555444444433
No 5
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.98 E-value=38 Score=42.49 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=23.3
Q ss_pred hHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHH
Q 006796 25 VCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 70 (630)
Q Consensus 25 ~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdL 70 (630)
.+--++|..++.+..+++|...-..-..+.+++ --|+.++..|
T Consensus 284 liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL---~ELe~rL~kL 326 (1486)
T PRK04863 284 HLEEALELRRELYTSRRQLAAEQYRLVEMAREL---AELNEAESDL 326 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 444555666666666665555544444444444 3456666666
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=91.75 E-value=28 Score=39.69 Aligned_cols=27 Identities=22% Similarity=0.585 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006796 202 TSKYISALEDELEKTRSSVENLQSKLR 228 (630)
Q Consensus 202 tskyisALEeEle~lr~si~~LQskLR 228 (630)
....+..++++++.++..++.|...+.
T Consensus 658 ~~~~~~~l~~~l~~~~~~~~~l~~~i~ 684 (880)
T PRK02224 658 AEEYLEQVEEKLDELREERDDLQAEIG 684 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777664
No 7
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=91.68 E-value=22 Score=41.88 Aligned_cols=74 Identities=24% Similarity=0.290 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhhhcccchHHHHHHH----HHhHHHHHHHhH-HHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhH
Q 006796 36 IEILKQKIAACARENSNLQEELSEA----YRIKGQLADLHA-AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK 110 (630)
Q Consensus 36 IE~LkkKl~~c~ReN~NLQeELsEA----YRiK~qLAdLh~-ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaK 110 (630)
..-++-...-.-.+-++||+|| .+ ||+..++-.-.+ .+-... +++ -||-+....||||....|.+...
T Consensus 62 lr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~--ld~----~~~q~~rl~~E~er~~~El~~lr 134 (775)
T PF10174_consen 62 LRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE--LDK----AQEQFERLQAERERLQRELERLR 134 (775)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh--hhh----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344445556888888 66 666666543321 111111 332 36778888899999999987766
Q ss_pred HHHHHH
Q 006796 111 EKEELM 116 (630)
Q Consensus 111 E~Ee~m 116 (630)
..-+.|
T Consensus 135 ~~lE~~ 140 (775)
T PF10174_consen 135 KTLEEL 140 (775)
T ss_pred HHHHHH
Confidence 443333
No 8
>PRK11637 AmiB activator; Provisional
Probab=91.34 E-value=22 Score=37.74 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=18.5
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhcccchHHHH
Q 006796 26 CISKAGLEQEIEILKQKIAACARENSNLQEEL 57 (630)
Q Consensus 26 ~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeEL 57 (630)
+.-++.++++++.+++++..--.+-..++.++
T Consensus 39 ~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~ 70 (428)
T PRK11637 39 SAHASDNRDQLKSIQQDIAAKEKSVRQQQQQR 70 (428)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456788888888886654433333333333
No 9
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.73 E-value=52 Score=40.89 Aligned_cols=139 Identities=19% Similarity=0.075 Sum_probs=93.1
Q ss_pred hhhhHHHHHHHHHHHhhhhh-cccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHH
Q 006796 29 KAGLEQEIEILKQKIAACAR-ENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE 107 (630)
Q Consensus 29 tA~LEQeIE~LkkKl~~c~R-eN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaE 107 (630)
.+.|++.|+.++.....|-| +--=+|.+.+++-+.=++..+.-..--..|.+++.+.+=-|-..+.++-+-+.+.-+.-
T Consensus 467 ~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk 546 (1317)
T KOG0612|consen 467 DKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRK 546 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 35889999999998888887 22337888888887777777666666778888888888889889999888888888877
Q ss_pred HhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 006796 108 KAKEKEELMSQKFNEFQTR---LEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ 170 (630)
Q Consensus 108 KaKE~Ee~m~qkf~~f~~R---~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~ 170 (630)
...+.+..|..++..-.++ ..++...+..+.+.+..++--+..+++. ..+....++.+|.
T Consensus 547 ~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~---k~~ls~~~~~~~~ 609 (1317)
T KOG0612|consen 547 QLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEES---KSKLSKENKKLRS 609 (1317)
T ss_pred HHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 7788888888777654433 2334444444444333333333222222 2345555565554
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=89.77 E-value=42 Score=38.35 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006796 205 YISALEDELEKTRSSVENLQSKLRMG 230 (630)
Q Consensus 205 yisALEeEle~lr~si~~LQskLR~G 230 (630)
.++.|+.+++.++..++.+.+.+...
T Consensus 483 ~~~~le~~l~~~~~~~e~l~~~~~~~ 508 (880)
T PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAE 508 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666666555554443
No 11
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.38 E-value=59 Score=39.48 Aligned_cols=112 Identities=21% Similarity=0.370 Sum_probs=69.3
Q ss_pred cchhhhhcchhhHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHH
Q 006796 14 KLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMA 93 (630)
Q Consensus 14 ~~d~~t~~~~~~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA 93 (630)
+|||..+-+|=+++-...|+++++.+..+++.+...=..++++|.. + ..++..+. .++.+. +.+++=.+..+.
T Consensus 587 ~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~-~--~~~~~~~~-~~~~~~---~~~~~~~~~~~~ 659 (1201)
T PF12128_consen 587 SLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQ-I--NKKIEELK-REITQA---EQELKQAEQDLQ 659 (1201)
T ss_pred EeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHH-HHHHHH---HHHHHhhHHHHH
Confidence 5888888888778888899999999999999887664444444432 2 22222221 222222 222333356777
Q ss_pred HHHhhhcchhHHHHHhHHHHH-HHHHHHHHHHHHHHHHHH
Q 006796 94 AAFAERDNSVMEAEKAKEKEE-LMSQKFNEFQTRLEELSS 132 (630)
Q Consensus 94 ~AFAERD~slmEaEKaKE~Ee-~m~qkf~~f~~R~eE~~s 132 (630)
.+..+|+.--++++.+++.+. ..-++++.++.++..+..
T Consensus 660 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 699 (1201)
T PF12128_consen 660 RLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQ 699 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888887788777766553 344455555555554433
No 12
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.01 E-value=42 Score=37.36 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=17.2
Q ss_pred HHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhH
Q 006796 73 AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK 110 (630)
Q Consensus 73 ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaK 110 (630)
.|..--+.+||...-+...+..+=..=+.-.-|.+..+
T Consensus 300 kE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 300 REVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544443333333333333333
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=88.67 E-value=64 Score=38.96 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHHH
Q 006796 391 KKIEELQRNLFQVTTEKVKALMELA 415 (630)
Q Consensus 391 ~~ieeLQrNl~QVt~EKVkaLmELA 415 (630)
.-.+.|+.-+..++.++...+|+.-
T Consensus 991 ~a~~~l~~~i~~~d~~~~~~f~~~f 1015 (1163)
T COG1196 991 EAKEKLLEVIEELDKEKRERFKETF 1015 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777888888888754
No 14
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.58 E-value=6.7 Score=41.76 Aligned_cols=158 Identities=30% Similarity=0.363 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHh-----------hhHHHHHHHHHHH-----------------Hhhhhh---chHHH
Q 006796 360 QALQEKVAALLLLSQQEERHLLERN-----------VNSALQKKIEELQ-----------------RNLFQV---TTEKV 408 (630)
Q Consensus 360 QALqEKveALlLlSQqeER~llE~~-----------~n~~Lq~~ieeLQ-----------------rNl~QV---t~EKV 408 (630)
+-|+-|++||+.||++=|.+-.|+. +.++|.++..++. .+|.|. +-|..
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Confidence 3589999999999998887777763 4467777777777 333221 33344
Q ss_pred HHH-HHHHhHHHHHHHHH-------HHHhhhhhhhccccCCCcccccccCcchhhHhhhh--------------------
Q 006796 409 KAL-MELAQLKQDYQLLQ-------EKICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLK-------------------- 460 (630)
Q Consensus 409 kaL-mELAqLkq~y~lL~-------e~~~~~~k~~~~~~~~~~k~~~~~er~G~lknilk-------------------- 460 (630)
+.| -|+..|+|.+.-++ ++.. ..+.+ .-+.|.+ ...|++...+..|-+
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la-~~r~~--~~~~~~~-~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEke 157 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLA-RQRVG--DEGIGAR-HFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKE 157 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHH-hhhhh--hcccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 46677777655444 3221 11111 1112222 333888888888766
Q ss_pred -----hhhHhhhhccCCCCCCCCccCcccccCccccccCccchhhhhhchhhHHHHHhhhHH----HHHHHHHHHHHHH
Q 006796 461 -----KTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDH----LISSIRRLRLSLS 530 (630)
Q Consensus 461 -----rtyLr~Wi~~~d~sG~~~~s~~~~~~~~~~~~~~s~D~ARmKvENAtLkEsvesmeh----LTSSihRLrl~Ll 530 (630)
|.+.|.=...+| | +.+..=+ |... .-+|+.-+-.||--|+|.+...+- +-++|-+..-+|-
T Consensus 158 El~~ERD~yk~K~~RLN---~-ELn~~L~-g~~~----rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 158 ELVTERDAYKCKAHRLN---H-ELNYILN-GDEN----RIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHH---H-HHHHHhC-CCCC----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332 1 1111000 1111 267999999999999999987664 3344555555444
No 15
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.16 E-value=23 Score=33.30 Aligned_cols=123 Identities=27% Similarity=0.362 Sum_probs=85.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccc
Q 006796 104 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK 183 (630)
Q Consensus 104 mEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~K 183 (630)
+|++-|-++-+..-+++.+++.|.......+.....-|..|..++..+.++....+.-.. +
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le---e---------------- 67 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE---E---------------- 67 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h----------------
Confidence 567777788888888888888888888888877777777888888777777664433222 1
Q ss_pred cccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHH
Q 006796 184 CACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDK 253 (630)
Q Consensus 184 cs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk 253 (630)
+...-+=++ +..+-|.-||++++.....+.-..-+||=.=.=-.|+-|+|..||.+..-|.+
T Consensus 68 -------~~~~~~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~ 129 (143)
T PF12718_consen 68 -------SEKRKSNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEE 129 (143)
T ss_pred -------HHHHHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence 111001011 47788999999999888888888777774322234888999999987765543
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=87.54 E-value=60 Score=37.37 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=7.5
Q ss_pred ccccccchhhHHHHH
Q 006796 599 KMDSVSAAGFEMVEL 613 (630)
Q Consensus 599 k~D~vsaAG~EMVEL 613 (630)
.+..+|++=-.+|-|
T Consensus 1071 ~~~~lSgge~~~~~l 1085 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTAL 1085 (1164)
T ss_pred cchhcCcchHHHHHH
Confidence 344555544445544
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.11 E-value=47 Score=35.66 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=13.5
Q ss_pred HHhhhHHHHHHhhHhHHHHHHHHHH
Q 006796 143 TLRFDLEKQEELNESFKEVINKFYE 167 (630)
Q Consensus 143 aLQ~dl~~~~eq~e~~~kVI~KFye 167 (630)
.++.++...+...+.+.+.+ +||+
T Consensus 259 ~l~~~~~~~~~~l~~~~~~~-~~~~ 282 (562)
T PHA02562 259 KLNTAAAKIKSKIEQFQKVI-KMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 35566666666666555553 4555
No 18
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=85.13 E-value=77 Score=36.26 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchHHHHH
Q 006796 30 AGLEQEIEILKQKIAACARENSNLQEELS 58 (630)
Q Consensus 30 A~LEQeIE~LkkKl~~c~ReN~NLQeELs 58 (630)
..|+++++.+++++..+...=..+++++.
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~ 701 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALA 701 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677776666555444444444333
No 19
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=84.90 E-value=43 Score=33.22 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHH
Q 006796 114 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK 164 (630)
Q Consensus 114 e~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~K 164 (630)
....+++.+.+.|++.++..+....+..+.|.-+|...++....+.+=++.
T Consensus 179 ~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 179 RDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666666666666665555554433
No 20
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.90 E-value=6.2 Score=37.91 Aligned_cols=119 Identities=26% Similarity=0.257 Sum_probs=24.3
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhh----------------------cccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHH
Q 006796 26 CISKAGLEQEIEILKQKIAACAR----------------------ENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEK 83 (630)
Q Consensus 26 ~qrtA~LEQeIE~LkkKl~~c~R----------------------eN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EK 83 (630)
+.|++.|+++...|+.....+.. -=..||+||+++||-+++++.---..-.++.++++
T Consensus 30 ~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~ 109 (194)
T PF08614_consen 30 ADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEK 109 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 67888998888887763222111 01348999999999999999553333344444444
Q ss_pred hhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhH
Q 006796 84 QVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 158 (630)
Q Consensus 84 QVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~ 158 (630)
..+=-++.++..=+++ ...-.++..+...++|....+...+-=-.+||+.+..+++....+
T Consensus 110 ~~~~~~~~l~~l~~~~--------------~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 110 ELSEKERRLAELEAEL--------------AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp ----HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333333221111 112234444444555555544444444445555555555554433
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.73 E-value=14 Score=36.76 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=18.3
Q ss_pred chhhHhhhhhhHHHHHHHHHHHhh
Q 006796 22 SPLVCISKAGLEQEIEILKQKIAA 45 (630)
Q Consensus 22 ~~~~~qrtA~LEQeIE~LkkKl~~ 45 (630)
+|-...|-..||++++.++.+|+.
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788889988888887765
No 22
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.43 E-value=83 Score=36.10 Aligned_cols=88 Identities=16% Similarity=0.243 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHH
Q 006796 211 DELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDV 290 (630)
Q Consensus 211 eEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~Im~lL~ee~s~i~s~v~~ 290 (630)
+++..+|.++..+...+|-==+.-+-|.+.+..|-|. ..-.....+|.++-+---+|+++|.+||.|-+. |..=||.
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~-lQkeiN~ 523 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRE-LQKEINS 523 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 5667777777777777776655555566655555554 445556677888888888999999999999875 5667899
Q ss_pred HHhhhcccccc
Q 006796 291 IEEKTQHCDDV 301 (630)
Q Consensus 291 ieekl~~~~n~ 301 (630)
+..||.-.+.+
T Consensus 524 l~gkL~RtF~v 534 (594)
T PF05667_consen 524 LTGKLDRTFTV 534 (594)
T ss_pred HHHHHHhHHHH
Confidence 99999333344
No 23
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.23 E-value=48 Score=33.21 Aligned_cols=247 Identities=20% Similarity=0.200 Sum_probs=116.3
Q ss_pred hhhhhcccchhhhhcchhhHhhhhhhHHHHHHHHHHH-hhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhh
Q 006796 7 LSSCVCSKLDLVTLLSPLVCISKAGLEQEIEILKQKI-AACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQV 85 (630)
Q Consensus 7 ~~~~v~~~~d~~t~~~~~~~qrtA~LEQeIE~LkkKl-~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQV 85 (630)
|..|.++-||-|--+ =+....|+.+|..++.+. ..+.+.....+.|+.++. ++|
T Consensus 9 LNdRla~YIekVr~L----E~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr---------------------~~i 63 (312)
T PF00038_consen 9 LNDRLASYIEKVRFL----EQENKRLESEIEELREKKGEEVSRIKEMYEEELRELR---------------------RQI 63 (312)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHH---------HHHHHHHHHHHHCHH---------------------HHH
T ss_pred HHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhH---------------------Hhh
Confidence 445555555554332 345556666666666652 223333333444443332 333
Q ss_pred hHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHH
Q 006796 86 KFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKF 165 (630)
Q Consensus 86 kFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KF 165 (630)
.-...--|..-.++|+.-.|++..+.+=+.-.+.....+.-+..+.+++++..-....|+..+..++++.+..+++-..
T Consensus 64 d~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee- 142 (312)
T PF00038_consen 64 DDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE- 142 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh-
Confidence 3333444666677777777777777666666666666666666677777777777777777777777777643333221
Q ss_pred HHHhhhhhhhhccccccccccccccccccccccCcchHHHHHHHHHHHHHHH------------HHHHHHHhhhhhh---
Q 006796 166 YEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTR------------SSVENLQSKLRMG--- 230 (630)
Q Consensus 166 yeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr------------~si~~LQskLR~G--- 230 (630)
+-.++.-.-. -..+.+++.+-++..+..+..+-.+.+... .++..++......
T Consensus 143 --------Ei~~L~~~~~----~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~ 210 (312)
T PF00038_consen 143 --------EIEELREQIQ----SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEE 210 (312)
T ss_dssp --------HHHTTSTT--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhhhhhhccc----cccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccc
Confidence 1111111100 233344555544545555555544443221 3344444333221
Q ss_pred ---HHHHH-HhHHhHHHHHHhhhh---hHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHHH
Q 006796 231 ---LEIEN-HLKKSVRELEKKIIH---SDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVI 291 (630)
Q Consensus 231 ---LEIEn-HLkk~vr~LeKkqi~---~dk~i~ngis~Lq~~h~~~R~~Im~lL~ee~s~i~s~v~~i 291 (630)
+--|. .+++.+..|+.+..- -...+.+.|.++.+.|...+...-..+..=...|..+-..+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 11111 134444444433221 24566778888888888777665555444444444444333
No 24
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.58 E-value=60 Score=40.86 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=63.7
Q ss_pred HhhhhHHHHHh----hhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHH
Q 006796 87 FFQGCMAAAFA----ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 160 (630)
Q Consensus 87 FFQs~VA~AFA----ERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~k 160 (630)
-+|+-||++|. ||-.-|=||=+.+++-+....++...+.++.++...+.+.+..-..|+.+.+..++..+...+
T Consensus 265 ~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee 342 (1486)
T PRK04863 265 ESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT 342 (1486)
T ss_pred hhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999995 788888899999999999999999999999999988888888888888888888877765554
No 25
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.11 E-value=97 Score=35.86 Aligned_cols=177 Identities=26% Similarity=0.330 Sum_probs=119.2
Q ss_pred cchhhHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhc
Q 006796 21 LSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERD 100 (630)
Q Consensus 21 ~~~~~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD 100 (630)
-+.|...=.+.|++.-...-+++.+|...|-+|-|.++++--..+..+-|-. +-..+.-+|.=||..|-+
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre----~~~~L~~D~nK~~~y~~~------ 284 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLRE----KKARLQDDVNKFQAYVSQ------ 284 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH----HHHHHHhHHHHHHHHHHH------
Confidence 3455666677888888888999999999999999999988888777775521 112267788888888765
Q ss_pred chhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccc
Q 006796 101 NSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSW 180 (630)
Q Consensus 101 ~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~ 180 (630)
|+ -+-..|-++++...+-+++-+++|...+..|+.|+.-++.+ ++|.
T Consensus 285 ---~~-----~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-------------------------~iS~ 331 (581)
T KOG0995|consen 285 ---MK-----SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-------------------------GISG 331 (581)
T ss_pred ---HH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------CCCH
Confidence 44 55567888888888888888888877777777765443332 2332
Q ss_pred ccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHH
Q 006796 181 EDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAI 259 (630)
Q Consensus 181 ~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~i~ngi 259 (630)
+|= .. ...=-..|+++++.....+|.|++++- +.+--.+.....+|++-+.+++.+++=.
T Consensus 332 ~dv--------e~--------mn~Er~~l~r~l~~i~~~~d~l~k~vw---~~~l~~~~~f~~le~~~~~~~~l~~~i~ 391 (581)
T KOG0995|consen 332 EDV--------ER--------MNLERNKLKRELNKIQSELDRLSKEVW---ELKLEIEDFFKELEKKFIDLNSLIRRIK 391 (581)
T ss_pred HHH--------HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 210 00 000123577777777777787777652 2222234556788888888888887643
No 26
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.92 E-value=14 Score=42.86 Aligned_cols=28 Identities=11% Similarity=0.200 Sum_probs=24.6
Q ss_pred hhhhHHHHHHhhhhcchhhhhHHHHHHh
Q 006796 266 HSQLRVHVVNSLEEGRSHIKSISDVIEE 293 (630)
Q Consensus 266 h~~~R~~Im~lL~ee~s~i~s~v~~iee 293 (630)
=..|+..|-++|.+....|+.+|+.|..
T Consensus 683 ~~~Q~~~I~~iL~~~~~~I~~~v~~ik~ 710 (717)
T PF10168_consen 683 SESQKRTIKEILKQQGEEIDELVKQIKN 710 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999999998864
No 27
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=82.15 E-value=22 Score=29.94 Aligned_cols=84 Identities=23% Similarity=0.354 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccccc
Q 006796 116 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMW 195 (630)
Q Consensus 116 m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~W 195 (630)
+..+|+.++.++..+.+++...+..-..++.=+..+ ..+..+.+|-..+.+.
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL------------------------~~l~~~~~~y~~vG~~---- 54 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEEL------------------------EKLDDDRKVYKSVGKM---- 54 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HTSSTT-EEEEEETTE----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HhCCCcchhHHHHhHH----
Confidence 567788888888777766654433222211111111 3344455666555544
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006796 196 SFNDTSTSKYISALEDELEKTRSSVENLQSKLR 228 (630)
Q Consensus 196 Sfn~tStskyisALEeEle~lr~si~~LQskLR 228 (630)
|=-.+...++..|++..+.+...+++|..++.
T Consensus 55 -fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~ 86 (106)
T PF01920_consen 55 -FVKQDKEEAIEELEERIEKLEKEIKKLEKQLK 86 (106)
T ss_dssp -EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33367788999999999999999998888765
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.58 E-value=59 Score=37.21 Aligned_cols=147 Identities=22% Similarity=0.226 Sum_probs=0.0
Q ss_pred hhhhhcccchhhhhcchhhHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHH-HHhHHHH------Hhhh
Q 006796 7 LSSCVCSKLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLA-DLHAAEV------IKNM 79 (630)
Q Consensus 7 ~~~~v~~~~d~~t~~~~~~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLA-dLh~ae~------skN~ 79 (630)
|..|+.-.=+.-+.+.+....-.+-.|| +..++.++.+.-+++.-|.+||+.|--++.... |||.|-+ .+=.
T Consensus 264 Lk~~~~~~~~~~~~~~~~~~e~e~Lkeq-Lr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLa 342 (546)
T PF07888_consen 264 LKETVVQLKQEETQAQQLQQENEALKEQ-LRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLA 342 (546)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q ss_pred HHHHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH---
Q 006796 80 EAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE--- 156 (630)
Q Consensus 80 e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e--- 156 (630)
++..++|=.+|-.++ |.+.-+.--++.-.++..+..++..+...+.+.+..+-+|+.+|...++.+.
T Consensus 343 d~~l~lke~~~q~~q----------Ek~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vql 412 (546)
T PF07888_consen 343 DASLELKEGRSQWAQ----------EKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQL 412 (546)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred -----------hHHHHHHH
Q 006796 157 -----------SFKEVINK 164 (630)
Q Consensus 157 -----------~~~kVI~K 164 (630)
+.++|..|
T Consensus 413 sE~~rel~Elks~lrv~qk 431 (546)
T PF07888_consen 413 SENRRELQELKSSLRVAQK 431 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 29
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=81.09 E-value=1.9e+02 Score=37.84 Aligned_cols=87 Identities=22% Similarity=0.254 Sum_probs=57.3
Q ss_pred HhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhh
Q 006796 76 IKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 155 (630)
Q Consensus 76 skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~ 155 (630)
+..-.+|++.|=|.+-+|.-=-..|...-|-+-+..-...-..+......+++|...++....+.|..|+.++..++.+.
T Consensus 1428 ~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~ 1507 (1930)
T KOG0161|consen 1428 AAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQK 1507 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888787776654433444444444444444455556666677788887788888888888888888888877
Q ss_pred HhHHHHH
Q 006796 156 ESFKEVI 162 (630)
Q Consensus 156 e~~~kVI 162 (630)
.-.-+.+
T Consensus 1508 ~e~~k~v 1514 (1930)
T KOG0161|consen 1508 DEGGKRV 1514 (1930)
T ss_pred HHHHHHH
Confidence 7555544
No 30
>PRK11637 AmiB activator; Provisional
Probab=80.96 E-value=83 Score=33.60 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhh-------hh-hHHH--HHHHHHHHHHhhhhhHH
Q 006796 202 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI-------IH-SDKF--ISNAIAELRLCHSQLRV 271 (630)
Q Consensus 202 tskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkq-------i~-~dk~--i~ngis~Lq~~h~~~R~ 271 (630)
+..-|+.++.+++.+...|+.+|.+|.-- ..-|.+++|.+-+.- ++ .+.| +. .+..+-.+..+.|.
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~---~~~l~~rlra~Y~~g~~~~l~vLl~a~~~~~~~-r~~~~l~~i~~~d~ 169 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQ---ERLLAAQLDAAFRQGEHTGLQLILSGEESQRGE-RILAYFGYLNQARQ 169 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcCCCcHHHHHhcCCChhHHH-HHHHHHHHHHHHHH
Confidence 55566777777777777777776665432 233566677766622 11 1111 11 22333344556677
Q ss_pred HHHHhhhhcchhhhhHHHHHHhhh-cc
Q 006796 272 HVVNSLEEGRSHIKSISDVIEEKT-QH 297 (630)
Q Consensus 272 ~Im~lL~ee~s~i~s~v~~ieekl-~~ 297 (630)
.+++-+.+....+......+++++ ++
T Consensus 170 ~~l~~l~~~~~~L~~~k~~le~~~~~l 196 (428)
T PRK11637 170 ETIAELKQTREELAAQKAELEEKQSQQ 196 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777777777777766 44
No 31
>PRK03918 chromosome segregation protein; Provisional
Probab=80.69 E-value=1.1e+02 Score=34.89 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=25.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006796 106 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 156 (630)
Q Consensus 106 aEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e 156 (630)
-+.+++..+...+++..++.++..++..+.+...--..|+..+..+.+...
T Consensus 233 l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~ 283 (880)
T PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK 283 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555666555555554444444444444444444433
No 32
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=80.63 E-value=8.1 Score=33.96 Aligned_cols=58 Identities=28% Similarity=0.315 Sum_probs=41.9
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhccc
Q 006796 381 LERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVL 438 (630)
Q Consensus 381 lE~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e~~~~~~k~~~~~ 438 (630)
+++.-+..|...|.+||.-|.-..+.=-.+=.|-.+|+++-+.|++|++++|...+.-
T Consensus 13 ~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~ 70 (80)
T PF10224_consen 13 LEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVF 70 (80)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444556677778888887765444333334678899999999999999999876443
No 33
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=80.09 E-value=1.2e+02 Score=34.83 Aligned_cols=7 Identities=14% Similarity=-0.064 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 006796 517 HLISSIR 523 (630)
Q Consensus 517 hLTSSih 523 (630)
++++-++
T Consensus 1096 ~~~~l~~ 1102 (1179)
T TIGR02168 1096 ALTALAL 1102 (1179)
T ss_pred HHHHHHH
Confidence 3333333
No 34
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=79.04 E-value=1.4e+02 Score=35.02 Aligned_cols=91 Identities=26% Similarity=0.354 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccCcch
Q 006796 123 FQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST 202 (630)
Q Consensus 123 f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tSt 202 (630)
..+|.+++++++ +.|+.||...+|+.. ......-++|.+.-+- +.-+-+ .
T Consensus 543 ~r~r~~~lE~E~-------~~lr~elk~kee~~~---~~e~~~~~lr~~~~e~-----~~~~e~---------------L 592 (697)
T PF09726_consen 543 CRQRRRQLESEL-------KKLRRELKQKEEQIR---ELESELQELRKYEKES-----EKDTEV---------------L 592 (697)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh-----hhhHHH---------------H
Confidence 344555555444 457777777777777 4444456777754110 000111 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHH
Q 006796 203 SKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEK 246 (630)
Q Consensus 203 skyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeK 246 (630)
.-.++|+++....|.++++ ..=||=|+++-.|-.--|.||-
T Consensus 593 ~~aL~amqdk~~~LE~sLs---aEtriKldLfsaLg~akrq~ei 633 (697)
T PF09726_consen 593 MSALSAMQDKNQHLENSLS---AETRIKLDLFSALGDAKRQLEI 633 (697)
T ss_pred HHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888888888888765 4567778889998666666653
No 35
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=78.26 E-value=20 Score=36.64 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006796 115 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 156 (630)
Q Consensus 115 ~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e 156 (630)
-+..+=.-|..|..|++.++..+++....||.++..++.-|-
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666789999999999999999999999999999999988
No 36
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=78.03 E-value=1.4e+02 Score=34.53 Aligned_cols=20 Identities=15% Similarity=0.468 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 006796 206 ISALEDELEKTRSSVENLQS 225 (630)
Q Consensus 206 isALEeEle~lr~si~~LQs 225 (630)
++.++.+++.+++.++++-.
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~ 972 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEP 972 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 45788888888888877665
No 37
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=74.87 E-value=76 Score=29.92 Aligned_cols=111 Identities=23% Similarity=0.226 Sum_probs=54.4
Q ss_pred hHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhH
Q 006796 25 VCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVM 104 (630)
Q Consensus 25 ~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slm 104 (630)
.-+|...+|++|..|++|+...=-+=-.+++.|.++..--..-... ..|.+ + ..|=..+|
T Consensus 26 le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~-----~~~~E--------------~-l~rriq~L 85 (143)
T PF12718_consen 26 LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR-----KSNAE--------------Q-LNRRIQLL 85 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHhHH--------------H-HHhhHHHH
Confidence 4577888888888888877655444444455554443222111111 11111 0 11222233
Q ss_pred H--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhh
Q 006796 105 E--AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 155 (630)
Q Consensus 105 E--aEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~ 155 (630)
| .+.+..+=.....++.+...+++++...+.......+.+...+..+..+.
T Consensus 86 Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 86 EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3 33344444444555555555666655555555555555554444444443
No 38
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=74.80 E-value=2.1e+02 Score=34.85 Aligned_cols=58 Identities=22% Similarity=0.262 Sum_probs=35.8
Q ss_pred hhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHH
Q 006796 29 KAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMA 93 (630)
Q Consensus 29 tA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA 93 (630)
...|+.+|..+...+..|..+-..++.++.++..-...+-. +-.+++.++-+...-++
T Consensus 669 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 726 (1163)
T COG1196 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRR-------QLEELERQLEELKRELA 726 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 34577888888888888888877777777666544333321 22344445555554444
No 39
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=74.53 E-value=1.2e+02 Score=31.96 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhH
Q 006796 32 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHA 72 (630)
Q Consensus 32 LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ 72 (630)
++.++..++++......+..++|.|++.+--.|+.|-.|..
T Consensus 41 ~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCR 81 (309)
T PF09728_consen 41 LQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCR 81 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888899999999999999999999999998844
No 40
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.39 E-value=1.8e+02 Score=34.11 Aligned_cols=217 Identities=27% Similarity=0.313 Sum_probs=134.5
Q ss_pred hhhHhhhhhhHHHHHHHHHHHhhhhhcccchHH----HHHHHHHhHHHHHHH------hHHHHHhhhHHHHhhhHhhhhH
Q 006796 23 PLVCISKAGLEQEIEILKQKIAACARENSNLQE----ELSEAYRIKGQLADL------HAAEVIKNMEAEKQVKFFQGCM 92 (630)
Q Consensus 23 ~~~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQe----ELsEAYRiK~qLAdL------h~ae~skN~e~EKQVkFFQs~V 92 (630)
+|.-|----|-|||+.|-+++...+++-+.--+ =|-|---+|-|+++| -.-|+-+.+|+=-|.+--+-.|
T Consensus 4 ~~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~ 83 (772)
T KOG0999|consen 4 PMAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKV 83 (772)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666677889999998888877776543211 233444566666655 3467778888877777777788
Q ss_pred HHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhh
Q 006796 93 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQS 172 (630)
Q Consensus 93 A~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~ 172 (630)
|.-=-||.-||++---||| +...+++.+++.-+. .+..+|+.-.+.++.+.+|..+|-+.-..+
T Consensus 84 ~~~g~e~EesLLqESaakE--~~yl~kI~eleneLK--------------q~r~el~~~q~E~erl~~~~sd~~e~~~~~ 147 (772)
T KOG0999|consen 84 ARDGEEREESLLQESAAKE--EYYLQKILELENELK--------------QLRQELTNVQEENERLEKVHSDLKESNAAV 147 (772)
T ss_pred hccchhhHHHHHHHHHHhH--HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 8888888888887555543 455666655544332 245567777788888888888886654322
Q ss_pred hhhhccccccccccccccccccccccCcc-hHHHHHHHHHHHHHHHHHHHHHHhh-hhh-hHHHHHH--------hHHhH
Q 006796 173 LEVLETSWEDKCACLLLDSAEMWSFNDTS-TSKYISALEDELEKTRSSVENLQSK-LRM-GLEIENH--------LKKSV 241 (630)
Q Consensus 173 ~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tS-tskyisALEeEle~lr~si~~LQsk-LR~-GLEIEnH--------Lkk~v 241 (630)
-.- - .=|.|-.--+-|-++- .|.| +-||||+=+|..+|++|.++ +-. ||-+|+. |.-.+
T Consensus 148 E~q--------R-~rlr~elKe~KfRE~RllseY-SELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ 217 (772)
T KOG0999|consen 148 EDQ--------R-RRLRDELKEYKFREARLLSEY-SELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQL 217 (772)
T ss_pred HHH--------H-HHHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 111 0 0011111123344332 3444 67999999999999888554 222 6655554 34444
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHh
Q 006796 242 RELEKKIIHSDKFISNAIAELRLC 265 (630)
Q Consensus 242 r~LeKkqi~~dk~i~ngis~Lq~~ 265 (630)
.....=..+.++-+...|-.||.-
T Consensus 218 ee~~~Lk~IAekQlEEALeTlq~E 241 (772)
T KOG0999|consen 218 EEAIRLKEIAEKQLEEALETLQQE 241 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444444456778888888888754
No 41
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=73.76 E-value=2.4e+02 Score=35.06 Aligned_cols=146 Identities=19% Similarity=0.272 Sum_probs=100.0
Q ss_pred HHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHH
Q 006796 73 AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 152 (630)
Q Consensus 73 ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~ 152 (630)
....++.++.+..+=+|-.++..-.|=|.-==|++-+++.=.....++++++.-..+.++.+.+.|.--+.|...++.++
T Consensus 306 ~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~ 385 (1074)
T KOG0250|consen 306 EKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLE 385 (1074)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777665555666677777777777788888888888888777777777777777777
Q ss_pred HhhH-hHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 006796 153 ELNE-SFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGL 231 (630)
Q Consensus 153 eq~e-~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskLR~GL 231 (630)
+|+. ...+-+. .-++|- ....+-|..||+++.+|+.+...++++++.+=
T Consensus 386 ~~~~~~~~~~~~---------------e~e~k~---------------~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 386 KQTNNELGSELE---------------ERENKL---------------EQLKKEVEKLEEQINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHhhhhhhHH---------------HHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6662 1111000 011111 12567889999999999999999999999975
Q ss_pred HHHHHhHHhHHHHHHhh
Q 006796 232 EIENHLKKSVRELEKKI 248 (630)
Q Consensus 232 EIEnHLkk~vr~LeKkq 248 (630)
|=--|++...+.|.|++
T Consensus 436 ee~~~i~~~i~~l~k~i 452 (1074)
T KOG0250|consen 436 EEKEHIEGEILQLRKKI 452 (1074)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55556666666666665
No 42
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=70.68 E-value=2.8e+02 Score=34.58 Aligned_cols=116 Identities=24% Similarity=0.346 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHH----hHHHHH--hhhHHHHhhhHhhhhHHHHHhhhcchhHH
Q 006796 32 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL----HAAEVI--KNMEAEKQVKFFQGCMAAAFAERDNSVME 105 (630)
Q Consensus 32 LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdL----h~ae~s--kN~e~EKQVkFFQs~VA~AFAERD~slmE 105 (630)
|++||+.++. -|-+=+++-++=|.+|-|.+.+--+| |+||.. +-+|.=-+.-||-.-|-- +++||.++=
T Consensus 203 lr~eLddlea---e~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRvee--lkedN~vLl 277 (1195)
T KOG4643|consen 203 LRNELDDLEA---EISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEE--LKEDNRVLL 277 (1195)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHH--HHhhhHHHH
Confidence 4455555554 67777788888888888887776555 455554 344444567788776644 578888776
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHhhhHHHHHHhhHh
Q 006796 106 AEKAKEKEELMSQKFNEFQTRL--EELSSENIELKKQNATLRFDLEKQEELNES 157 (630)
Q Consensus 106 aEKaKE~Ee~m~qkf~~f~~R~--eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~ 157 (630)
+|| ++|-.+++.+..|- -+++|.+...|+.-+.++++.....-|++.
T Consensus 278 eek-----eMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~ktee 326 (1195)
T KOG4643|consen 278 EEK-----EMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEE 326 (1195)
T ss_pred HHH-----HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 554 34444555555555 445555555555555555544444444443
No 43
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=70.29 E-value=1.9e+02 Score=32.52 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=46.2
Q ss_pred ccchhhhhhchhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHH
Q 006796 495 SIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLV 559 (630)
Q Consensus 495 s~D~ARmKvENAtLkEsvesmehLTSSihRLrl~LlKv~e~v~s~~t~~~~~eal~~ii~EA~l~ 559 (630)
|+|...+ |..|.+....|++|...++-|.-.-.-|-...--+--..+..+-++.-+++|..+
T Consensus 464 pinm~~v---~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~Ae~~ 525 (560)
T PF06160_consen 464 PINMDEV---NKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRYRSDNPEVDEALTEAEDL 525 (560)
T ss_pred CcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 4554333 6788888888999999888887776666666666777778888888888888653
No 44
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=68.05 E-value=1.6e+02 Score=30.66 Aligned_cols=177 Identities=19% Similarity=0.294 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccc
Q 006796 119 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFN 198 (630)
Q Consensus 119 kf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn 198 (630)
++..+..++.+++-.+.+.+.+-.+++.++....++....-+ | + .
T Consensus 39 e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~----------------------k----l---------~ 83 (239)
T COG1579 39 ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE----------------------K----L---------S 83 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------H----H---------h
Confidence 344555566666666666666666777777666655541110 0 0 1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHh-------HHHHHHhhhhhHHHHHHHHHHHH---Hhhhh
Q 006796 199 DTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKS-------VRELEKKIIHSDKFISNAIAELR---LCHSQ 268 (630)
Q Consensus 199 ~tStskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~-------vr~LeKkqi~~dk~i~ngis~Lq---~~h~~ 268 (630)
+.++.+-.+||+.|.++++..+..|-..|.=-.+...+|.+. +..+|+...-+-.-+...+..+. +-|..
T Consensus 84 ~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~ 163 (239)
T COG1579 84 AVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSS 163 (239)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245778888888888888877777777776555555555443 34444444444455555555554 45666
Q ss_pred hHHHHHHhhhhcchhhhhHHHHHHhhhccccccccccccCCCccccccccccccceeec-cCCCCccccCCCCCccchh
Q 006796 269 LRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHIN-NDADTNLVSQRNDPAYCDI 346 (630)
Q Consensus 269 ~R~~Im~lL~ee~s~i~s~v~~ieekl~~~~n~~~E~n~~~pq~e~~~~e~ecrDVHvs-~d~~p~~~~k~~~p~~~~~ 346 (630)
+|+++..=|..+ ++-.+|.-..- .--.+..|+...-|.--||- |+..-+.+.+.|.+..|..
T Consensus 164 ~~~~L~~~l~~e------ll~~yeri~~~----------~kg~gvvpl~g~~C~GC~m~l~~~~~~~V~~~d~iv~CP~ 226 (239)
T COG1579 164 KREELKEKLDPE------LLSEYERIRKN----------KKGVGVVPLEGRVCGGCHMKLPSQTLSKVRKKDEIVFCPY 226 (239)
T ss_pred HHHHHHHhcCHH------HHHHHHHHHhc----------CCCceEEeecCCcccCCeeeecHHHHHHHhcCCCCccCCc
Confidence 776665544432 11122211111 11245566677788888874 3344455666666666554
No 45
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.55 E-value=3.2e+02 Score=33.71 Aligned_cols=101 Identities=16% Similarity=0.260 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHH-------HHHHHHhhhhhhhhccccccccccccccc
Q 006796 119 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI-------NKFYEIRQQSLEVLETSWEDKCACLLLDS 191 (630)
Q Consensus 119 kf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI-------~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds 191 (630)
..+.+..++.+.++.+......-+.|+.++..+..+-+...++= .|.=+|+.--.. +.++-.-++.
T Consensus 495 ~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~-----~~~~~~~~~~-- 567 (1311)
T TIGR00606 495 LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSR-----HSDELTSLLG-- 567 (1311)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcC--
Confidence 45566677777777777777777777777666665555443322 222222211111 1111111221
Q ss_pred cccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006796 192 AEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRM 229 (630)
Q Consensus 192 ~~~WSfn~tStskyisALEeEle~lr~si~~LQskLR~ 229 (630)
.|.-+ ....+++.++..++..++..++.++.++.-
T Consensus 568 --~~~~~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~ 602 (1311)
T TIGR00606 568 --YFPNK-KQLEDWLHSKSKEINQTRDRLAKLNKELAS 602 (1311)
T ss_pred --CCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23111 446778888888888888888888877743
No 46
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=64.32 E-value=1.3e+02 Score=28.32 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHH
Q 006796 109 AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFY 166 (630)
Q Consensus 109 aKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFy 166 (630)
.+..-..+.+++.+++++..++++....++.....++.++...++..+.+...+..+.
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 143 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELE 143 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556677777777777777777777776666666666555555555544433
No 47
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=64.17 E-value=47 Score=35.55 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHH
Q 006796 36 IEILKQKIAACARENSNLQEELSEAYRIKGQLADL 70 (630)
Q Consensus 36 IE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdL 70 (630)
|-.|..-|+.++.+|...|+|.+ ++-+|++||
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt---~Llsqivdl 246 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEIT---SLLSQIVDL 246 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 45555555555555555555554 455555555
No 48
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=64.04 E-value=32 Score=29.82 Aligned_cols=54 Identities=22% Similarity=0.331 Sum_probs=44.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhhh---------hhHHHHHHhHHhHHHHHHhhhhhH
Q 006796 199 DTSTSKYISALEDELEKTRSSVENLQSKLR---------MGLEIENHLKKSVRELEKKIIHSD 252 (630)
Q Consensus 199 ~tStskyisALEeEle~lr~si~~LQskLR---------~GLEIEnHLkk~vr~LeKkqi~~d 252 (630)
+.+.+..|.+||.|++-++-....||..++ ..=.+++||.+-|..||.|--.+.
T Consensus 12 ~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 12 GEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455889999999999999988888866654 467899999999999999865443
No 49
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=62.83 E-value=6.5 Score=40.40 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=21.7
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHH
Q 006796 195 WSFNDTSTSKYISALEDELEKTRSSVENL 223 (630)
Q Consensus 195 WSfn~tStskyisALEeEle~lr~si~~L 223 (630)
+.-|.. -.+=|+|||.||-.||++|+++
T Consensus 114 ~~~~~~-AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 114 LPANEA-ALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred cCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 3456899999999999999975
No 50
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=62.78 E-value=99 Score=32.86 Aligned_cols=85 Identities=25% Similarity=0.330 Sum_probs=57.9
Q ss_pred HHHHHHH---hHHHHHhhhHH--HHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 64 KGQLADL---HAAEVIKNMEA--EKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELK 138 (630)
Q Consensus 64 K~qLAdL---h~ae~skN~e~--EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk 138 (630)
|..|+++ |..+..-|-++ ||.---|| ++--|-+=+.|-..+++++.-.+|-..++..||
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yq----------------vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K 146 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQ----------------VDLLKDKLEELEETLAQLQREYREKIRELERQK 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777766 66666666555 45544444 343444444444455555555567777889999
Q ss_pred HhhHHHhhhHHHHHHhhHhHHHHHHH
Q 006796 139 KQNATLRFDLEKQEELNESFKEVINK 164 (630)
Q Consensus 139 ~~n~aLQ~dl~~~~eq~e~~~kVI~K 164 (630)
+..+.|+.++..++++..--...|.|
T Consensus 147 ~~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 147 RAHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998766666643
No 51
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=61.92 E-value=1.4e+02 Score=27.93 Aligned_cols=85 Identities=24% Similarity=0.306 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhH
Q 006796 31 GLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK 110 (630)
Q Consensus 31 ~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaK 110 (630)
.+|-|+-.||..++...++--.|.+|+.....--..+. +......+++++ .+.-.
T Consensus 27 ~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~----~~~~~~~~L~~e---------------------l~~l~ 81 (120)
T PF12325_consen 27 RLEGELASLQEELARLEAERDELREEIVKLMEENEELR----ALKKEVEELEQE---------------------LEELQ 81 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---------------------HHHHH
Confidence 35666666666666666666666666665544333332 222333333333 33344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006796 111 EKEELMSQKFNEFQTRLEELSSENIELKKQ 140 (630)
Q Consensus 111 E~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~ 140 (630)
.+-.++++-+-+=.++++|++-++.+.|.+
T Consensus 82 ~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 82 QRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888888854
No 52
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.00 E-value=99 Score=36.70 Aligned_cols=59 Identities=27% Similarity=0.410 Sum_probs=45.8
Q ss_pred HHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Q 006796 92 MAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 153 (630)
Q Consensus 92 VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~e 153 (630)
+.-|+-+|++.|+|..+.|-.-+ +.|..+..|++-.++++--.|+-=..|+-+|+.+.+
T Consensus 111 l~~~l~~~~~~i~~l~~~~~~~e---~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~ 169 (769)
T PF05911_consen 111 LSKALQEKEKLIAELSEEKSQAE---AEIEDLMARLESTEKENSSLKYELHVLSKELEIRNE 169 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577889999999887776655 578888899999988888888777777777766544
No 53
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=59.89 E-value=1e+02 Score=34.98 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=49.6
Q ss_pred hhhHhhhhHHHHHh-hhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006796 84 QVKFFQGCMAAAFA-ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 156 (630)
Q Consensus 84 QVkFFQs~VA~AFA-ERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e 156 (630)
|--+|-...--|=+ +-|.+.+|++| ..|.++..+++.++...+++..++++.|-.|+.++-....+.+
T Consensus 352 ~k~~~e~~~~e~~~l~~~~~~~e~~k-----k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 352 QKQYYELLITEADSLKQESSDLEAEK-----KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLK 420 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333333333333 55677777554 5788899999999999999999999999999988877655554
No 54
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.40 E-value=1.5e+02 Score=27.38 Aligned_cols=166 Identities=19% Similarity=0.246 Sum_probs=86.8
Q ss_pred hhhhhhhhhcccchhhhhcchhhHhhhhhhHHHHHHHHHHHhhhhhcccc----hHHHHHHHHHhHHHHHHHhHHHHHh-
Q 006796 3 YAKILSSCVCSKLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSN----LQEELSEAYRIKGQLADLHAAEVIK- 77 (630)
Q Consensus 3 ~~~~~~~~v~~~~d~~t~~~~~~~qrtA~LEQeIE~LkkKl~~c~ReN~N----LQeELsEAYRiK~qLAdLh~ae~sk- 77 (630)
|.+.|..++- ++...+.|+. .|..+|-.+...|=..+.++...-.. |..=+...-+.-..+++++......
T Consensus 12 ~v~~le~~l~---~l~~~~~~~~-k~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (218)
T cd07596 12 YILKLEEQLK---KLSKQAQRLV-KRRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLSEAQANQE 87 (218)
T ss_pred HHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555443 2444444444 33345555566665555555443222 3333333333333444443322221
Q ss_pred hhHHHHhhhHhhh---hHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHhhh
Q 006796 78 NMEAEKQVKFFQG---CMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQ-------TRLEELSSENIELKKQNATLRFD 147 (630)
Q Consensus 78 N~e~EKQVkFFQs---~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~-------~R~eE~~s~~~~qk~~n~aLQ~d 147 (630)
...+---++.|.+ +|=.+|..|+..+.+.+.+...-...-+++..++ .|+.++++.+.+.++.-..+..+
T Consensus 88 ~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~ 167 (218)
T cd07596 88 LVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKR 167 (218)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123334444444 5567899999999999988887777766666554 35566666665555444444444
Q ss_pred HHHHHHhhHhHHHHHHHHHHHhhhhhhh
Q 006796 148 LEKQEELNESFKEVINKFYEIRQQSLEV 175 (630)
Q Consensus 148 l~~~~eq~e~~~kVI~KFyeiR~~~~e~ 175 (630)
+... ++..+.=+..|..-|..+..+
T Consensus 168 ~~~i---~~~~~~El~~f~~~~~~dlk~ 192 (218)
T cd07596 168 YEEI---SERLKEELKRFHEERARDLKA 192 (218)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4333 333335556666666655553
No 55
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=59.14 E-value=64 Score=36.89 Aligned_cols=124 Identities=21% Similarity=0.206 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccCcch
Q 006796 123 FQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST 202 (630)
Q Consensus 123 f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tSt 202 (630)
..+++..++..+....+-+..|+.++..++.+.+.. .+|+ .--...-|+=.|=+.|.-.|-+.-
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~--------~L~g-----~~~~~~trVL~lr~NP~~~~~~~k--- 564 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEKL--------TLQG-----EFNPSKTRVLHLRDNPTSKAEQIK--- 564 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCT-------BTTTEEEEEESS-HHHHHHHHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhcc-----ccCCCCceeeeeCCCcHHHHHHHH---
Confidence 344555555566555556666666666666555411 0111 111233456666666666655442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh--------hHHHH----HHhHHhHHHHHHhhhhhHHHHHHHHHHH
Q 006796 203 SKYISALEDELEKTRSSVENLQSKLRM--------GLEIE----NHLKKSVRELEKKIIHSDKFISNAIAEL 262 (630)
Q Consensus 203 skyisALEeEle~lr~si~~LQskLR~--------GLEIE----nHLkk~vr~LeKkqi~~dk~i~ngis~L 262 (630)
..-+.+|..|++.|++.+..|...-.. ++..- +-|+..+..+||+..-+-.++...+.++
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eF 636 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEF 636 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235677777777777777666432211 12221 2367777777777766666666666554
No 56
>PRK03918 chromosome segregation protein; Provisional
Probab=58.97 E-value=3.3e+02 Score=31.25 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=12.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 105 EAEKAKEKEELMSQKFNEFQTRLEELSSEN 134 (630)
Q Consensus 105 EaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~ 134 (630)
+++.+..+-+...+++.+.+..+++++..+
T Consensus 606 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~i 635 (880)
T PRK03918 606 ELKDAEKELEREEKELKKLEEELDKAFEEL 635 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444333
No 57
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=56.95 E-value=88 Score=26.93 Aligned_cols=45 Identities=29% Similarity=0.269 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHHH
Q 006796 384 NVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKI 428 (630)
Q Consensus 384 ~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e~~ 428 (630)
.++..||..+++|++.-.+..++.-..--|..||++++...+++.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666555555566666667777777777666655
No 58
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=56.48 E-value=2e+02 Score=28.06 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHH
Q 006796 115 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFK 159 (630)
Q Consensus 115 ~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~ 159 (630)
.+..+....+.|+..+...+..+++.....+..++.+.+.++.-.
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666666666666666666666333
No 59
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=56.44 E-value=36 Score=30.86 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=6.3
Q ss_pred hhHHHHhhhHhhhhHHHHHhhhcchhHHH
Q 006796 78 NMEAEKQVKFFQGCMAAAFAERDNSVMEA 106 (630)
Q Consensus 78 N~e~EKQVkFFQs~VA~AFAERD~slmEa 106 (630)
+.++|+|+|.|+. .|.-++..|..||+.
T Consensus 28 ~~eLe~q~k~F~~-qA~~V~~wDr~Lv~n 55 (116)
T PF05064_consen 28 NKELEEQEKEFNE-QATQVNAWDRQLVEN 55 (116)
T ss_dssp ----------------------TCHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 6789999999985 688899999999984
No 60
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.96 E-value=1.8e+02 Score=27.35 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=11.6
Q ss_pred HHHHHHhhHHHhhhHHHHHHhhHhHHH
Q 006796 134 NIELKKQNATLRFDLEKQEELNESFKE 160 (630)
Q Consensus 134 ~~~qk~~n~aLQ~dl~~~~eq~e~~~k 160 (630)
+..+...-..++.++..+.++......
T Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 160 VQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444443333
No 61
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=55.60 E-value=2.2e+02 Score=29.42 Aligned_cols=56 Identities=18% Similarity=0.292 Sum_probs=30.9
Q ss_pred hhhHHHHHhhhcchhHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHh
Q 006796 89 QGCMAAAFAERDNSVMEAEKAKEKEE-------LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 154 (630)
Q Consensus 89 Qs~VA~AFAERD~slmEaEKaKE~Ee-------~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq 154 (630)
=+++=+.|.+||..=++-|+..|... .+-+++.+.+.|++++ |.++..|++.-+++
T Consensus 148 ~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a----------~~~~k~e~~Rf~~~ 210 (243)
T cd07666 148 SETLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA----------NNALKADWERWKQN 210 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 34455689999987777776655433 3333444444444444 44455555554443
No 62
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=54.94 E-value=3.3e+02 Score=34.70 Aligned_cols=58 Identities=26% Similarity=0.239 Sum_probs=50.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHH
Q 006796 106 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 163 (630)
Q Consensus 106 aEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~ 163 (630)
||+.+++.+..+++-+.-.+|+.+++-..++-.+.-...+.+|+.|+...++.++-|+
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6777788888888889999999999888877777778889999999999998888887
No 63
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=54.20 E-value=4e+02 Score=30.84 Aligned_cols=103 Identities=29% Similarity=0.358 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHH---HHHHHHHHHhhhhhhhhccccccccccccccccc
Q 006796 117 SQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFK---EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAE 193 (630)
Q Consensus 117 ~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~---kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~ 193 (630)
-+++.++++.+.++.+++.....--..++..+....+..+... .-+. ..+...+|.--||.|+..
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le------------~~~~l~~k~~~lL~d~e~ 394 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELE------------EELKLKKKTVELLPDAEE 394 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhcCcHH
Confidence 3444444455555544444444444444444444433333111 1112 333445566667777765
Q ss_pred cccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH---hHHhHHHHHHhh
Q 006796 194 MWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENH---LKKSVRELEKKI 248 (630)
Q Consensus 194 ~WSfn~tStskyisALEeEle~lr~si~~LQskLR~GLEIEnH---Lkk~vr~LeKkq 248 (630)
| |+.|+.-++.-.+.+..|+++.- .| |....|.|+.+.
T Consensus 395 n-----------i~kL~~~v~~s~~rl~~L~~qWe------~~R~pL~~e~r~lk~~~ 435 (594)
T PF05667_consen 395 N-----------IAKLQALVEASEQRLVELAQQWE------KHRAPLIEEYRRLKEKA 435 (594)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHH
Confidence 4 78899999999999988887652 33 455555555443
No 64
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.71 E-value=3e+02 Score=28.99 Aligned_cols=86 Identities=21% Similarity=0.336 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHh-----------HHH---HHHHHHHHhhhhhhhhccccccccccccccc
Q 006796 126 RLEELSSENIELKKQNATLRFDLEKQEELNES-----------FKE---VINKFYEIRQQSLEVLETSWEDKCACLLLDS 191 (630)
Q Consensus 126 R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~-----------~~k---VI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds 191 (630)
=++||.+-+......|..|....--.++.+-. |-. +|+..+.-+-....|.=-+|++|
T Consensus 7 sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek-------- 78 (258)
T PF15397_consen 7 SLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEK-------- 78 (258)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHH--------
Confidence 35677777888888888887776655554432 222 33333333333333433344444
Q ss_pred cccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006796 192 AEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRM 229 (630)
Q Consensus 192 ~~~WSfn~tStskyisALEeEle~lr~si~~LQskLR~ 229 (630)
..+=++.|+++++.|.+.|.+.|-.|++
T Consensus 79 ----------~e~~l~~Lq~ql~~l~akI~k~~~el~~ 106 (258)
T PF15397_consen 79 ----------EESKLSKLQQQLEQLDAKIQKTQEELNF 106 (258)
T ss_pred ----------HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456889999999999999999999988
No 65
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=52.30 E-value=3.3e+02 Score=29.35 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 006796 113 EELMSQKFNEFQTRLEELSSENIELKKQNATLRFD 147 (630)
Q Consensus 113 Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~d 147 (630)
+..+-.+++.|.+|+.++..-+....++..-+...
T Consensus 219 ~~~vf~~~~~f~~Rl~~i~~i~~~~~~f~~l~~~~ 253 (579)
T PF08385_consen 219 EKKVFGRLDAFKERLEDIKEIRETHEQFSRLLKSE 253 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45777889999999999988888888777776666
No 66
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.06 E-value=6.3e+02 Score=32.16 Aligned_cols=80 Identities=15% Similarity=0.036 Sum_probs=46.6
Q ss_pred HHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 006796 69 DLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELM---SQKFNEFQTRLEELSSENIELKKQNATLR 145 (630)
Q Consensus 69 dLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m---~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ 145 (630)
+|-+-+.--|.+|++...=|+..-..-=+|++ ..|+.| +.++++...++.=.+|+++..+..-.+++
T Consensus 451 ~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~----------~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~ 520 (1293)
T KOG0996|consen 451 QLEELLEKEERELDEILDSLKQETEGIREEIE----------KLEKELMPLLKQVNEARSELDVAESELDILLSRHETGL 520 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566777766666654443332222 223333 34555555666667777777777777777
Q ss_pred hhHHHHHHhhHhH
Q 006796 146 FDLEKQEELNESF 158 (630)
Q Consensus 146 ~dl~~~~eq~e~~ 158 (630)
..++.++...+.+
T Consensus 521 ~~~e~lk~~L~~~ 533 (1293)
T KOG0996|consen 521 KKVEELKGKLLAS 533 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666643
No 67
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.80 E-value=2.2e+02 Score=28.07 Aligned_cols=50 Identities=24% Similarity=0.328 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHH
Q 006796 113 EELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKF 165 (630)
Q Consensus 113 Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KF 165 (630)
...+++++++++++..++++.+....+.+- .-+..+++.+...+.-+|.|
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~~~~~~Dp---~~i~~~~~~~~~~~~~anrw 154 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELEKYSENDP---EKIEKLKEEIKIAKEAANRW 154 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHH
Confidence 344788889999999888888874443222 24555555565555555543
No 68
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.52 E-value=2.6e+02 Score=29.13 Aligned_cols=95 Identities=24% Similarity=0.237 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHh-HHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHH
Q 006796 29 KAGLEQEIEILKQKIAACARENSNLQEELSEAYRI-KGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE 107 (630)
Q Consensus 29 tA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRi-K~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaE 107 (630)
++|=++-++-|+++.-..--|--.=-+++++|-|| |+-|+.|-+-|++ +----.==+.-+.|+|
T Consensus 28 ~~~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E~~---------------mlKtqrv~e~nlre~e 92 (222)
T KOG3215|consen 28 GDGGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDEPS---------------MLKTQRVIEMNLREIE 92 (222)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcccc---------------hHHHHHHHHHHHHHHH
Confidence 46678888888888765544433333459999999 6668888433332 2211111223345666
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 108 KAKEKEELMSQKFNEFQTRLEELSSENIELK 138 (630)
Q Consensus 108 KaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk 138 (630)
---+..+.|-++|.+-..-++.+-.++.+-|
T Consensus 93 ~~~q~k~Eiersi~~a~~kie~lkkql~eaK 123 (222)
T KOG3215|consen 93 NLVQKKLEIERSIQKARNKIELLKKQLHEAK 123 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777777777777766666555
No 69
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=50.28 E-value=3.7e+02 Score=31.26 Aligned_cols=124 Identities=21% Similarity=0.334 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHH
Q 006796 28 SKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE 107 (630)
Q Consensus 28 rtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaE 107 (630)
....|..+++.|..++.+-+++|..|-.-..+- +.+|++| |..++=++.-. ++|+.=+=..+
T Consensus 88 E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~Eq---EerL~EL-----------E~~le~~~e~~----~D~~kLLe~lq 149 (617)
T PF15070_consen 88 EAEHLRKELESLEEQLQAQVENNEQLSRLNQEQ---EERLAEL-----------EEELERLQEQQ----EDRQKLLEQLQ 149 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----------HHHHHHHHHHH----HHHHHHHhhhc
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHhhhHHHHHHhhHhHHHHHHHHHHHh
Q 006796 108 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQN----ATLRFDLEKQEELNESFKEVINKFYEIR 169 (630)
Q Consensus 108 KaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n----~aLQ~dl~~~~eq~e~~~kVI~KFyeiR 169 (630)
--|.----...+=.++.+++.|++...-..-.-| .+||.+.-+-++-...+-.+=.|..+++
T Consensus 150 sdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 150 SDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred ccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 70
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=50.08 E-value=3.1e+02 Score=31.77 Aligned_cols=97 Identities=22% Similarity=0.223 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccccccc
Q 006796 118 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF 197 (630)
Q Consensus 118 qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSf 197 (630)
+.+.+++.|+.-|=...--++.+|.+|++|+..+..---.-..=|.-+|+.=- -.|.-+|++.+.-
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El-----------~~ar~~l~e~~~~--- 107 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAEL-----------ATARKLLDETARE--- 107 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhH-----------HHHHHHHHHHHHH---
Confidence 35678889999999999999999999999999886543322234555665322 1233455554321
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006796 198 NDTSTSKYISALEDELEKTRSSVENLQSKLRM 229 (630)
Q Consensus 198 n~tStskyisALEeEle~lr~si~~LQskLR~ 229 (630)
-+....=|..|++|++.++.++++.+..++.
T Consensus 108 -ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~ 138 (546)
T KOG0977|consen 108 -RAKLEIEITKLREELKELRKKLEKAEKERRG 138 (546)
T ss_pred -HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 0123344788999999999998888665544
No 71
>PLN02939 transferase, transferring glycosyl groups
Probab=50.06 E-value=5.8e+02 Score=31.59 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=24.2
Q ss_pred hcchhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006796 99 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEE 129 (630)
Q Consensus 99 RD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE 129 (630)
|=++|-+.+|.--..|+.-.+++-++.|+.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 151 RLQALEDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 4455667777766667888899999999998
No 72
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.78 E-value=16 Score=31.70 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=36.2
Q ss_pred hhhcchhhHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHH
Q 006796 18 VTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSE 59 (630)
Q Consensus 18 ~t~~~~~~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsE 59 (630)
-+-+.+.-.+.+.-|-++|++|++|...+-++|..|+.++.|
T Consensus 59 e~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~e 100 (100)
T PF01486_consen 59 ESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIEE 100 (100)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345667778888889999999999999999999999998764
No 73
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=48.77 E-value=2.9e+02 Score=27.58 Aligned_cols=109 Identities=20% Similarity=0.331 Sum_probs=67.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhH-HHHHHHHHHHhhhhhhhhccccccccc
Q 006796 107 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF-KEVINKFYEIRQQSLEVLETSWEDKCA 185 (630)
Q Consensus 107 EKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~-~kVI~KFyeiR~~~~e~~~~s~~~Kcs 185 (630)
.+.|+....+++=+.+|+.++.++...+.+- .+.+-..+...+++-... +.+|..+|+=.|......-..|+++
T Consensus 60 ~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~---~~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~~~~~~v~~~~fe~~-- 134 (215)
T PF07083_consen 60 DKRKEIKKEYSKPIKEFEAKIKELIAPIDEA---SDKIDEQIKEFEEKEKEEKREKIKEYFEEMAEEYGVDPEPFERI-- 134 (215)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHhhh--
Confidence 4567888899999999999999998777643 344444444444433322 3466666665554433222334444
Q ss_pred cccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 006796 186 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 225 (630)
Q Consensus 186 ~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQs 225 (630)
-...|.=.+.|..+.+..++..+..+...+.-+-.
T Consensus 135 -----~~~~wlnks~s~kk~~eei~~~i~~~~~~~~~~~~ 169 (215)
T PF07083_consen 135 -----IKPKWLNKSYSLKKIEEEIDDQIDKIKQDLEEIKA 169 (215)
T ss_pred -----cchHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568777888888777777666666555444433
No 74
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=48.72 E-value=3.8e+02 Score=29.01 Aligned_cols=136 Identities=23% Similarity=0.317 Sum_probs=72.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccc
Q 006796 107 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCAC 186 (630)
Q Consensus 107 EKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~ 186 (630)
+-|+.+|....-.++.-++-+.||.|++-+.|.+-.-- .....+-.+--.||-||.-=...++.-+--.++
T Consensus 125 ~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps-----~~qlR~~llDPAinl~F~rlK~ele~tk~Klee---- 195 (330)
T KOG2991|consen 125 QEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPS-----VAQLRSTLLDPAINLFFLRLKGELEQTKDKLEE---- 195 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH-----HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34456666666777778888888999988777553221 111111222357888887666555541111111
Q ss_pred cccccccccccc-CcchHHHHH----HHHHHHHHHHHHHHHHHhhhhh-hHHHHHHhHHhHH-HHHHhhhhhHHHHH
Q 006796 187 LLLDSAEMWSFN-DTSTSKYIS----ALEDELEKTRSSVENLQSKLRM-GLEIENHLKKSVR-ELEKKIIHSDKFIS 256 (630)
Q Consensus 187 LL~Ds~~~WSfn-~tStskyis----ALEeEle~lr~si~~LQskLR~-GLEIEnHLkk~vr-~LeKkqi~~dk~i~ 256 (630)
+-|-.--|.|. ++-|-|-+= -|.+|++.|-...+ +=|+ -||||=-++|.-. +|-+.|--+++||.
T Consensus 196 -~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s----~Gria~Le~eLAmQKs~seElkssq~eL~dfm~ 267 (330)
T KOG2991|consen 196 -AQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQAS----EGRIAELEIELAMQKSQSEELKSSQEELYDFME 267 (330)
T ss_pred -HHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhh----cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Confidence 11223348887 444555543 37777766653322 2222 2566655555443 34444444555553
No 75
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=48.13 E-value=1.9e+02 Score=25.37 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=26.2
Q ss_pred cccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006796 178 TSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 178 ~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskL 227 (630)
+..+.+|-.++.+ .|=..+....+..|++.++.+...++.+..++
T Consensus 42 l~~d~~vy~~VG~-----vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~ 86 (105)
T cd00632 42 LADDAEVYKLVGN-----VLVKQEKEEARTELKERLETIELRIKRLERQE 86 (105)
T ss_pred CCCcchHHHHhhh-----HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666655555 23335555666777776666666666665554
No 76
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=47.24 E-value=1.4e+02 Score=25.44 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHhhhhhcccchHHHH
Q 006796 31 GLEQEIEILKQKIAACARENSNLQEEL 57 (630)
Q Consensus 31 ~LEQeIE~LkkKl~~c~ReN~NLQeEL 57 (630)
.||++|.+|+.+|...+|.|..-+.++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~ 28 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIEN 28 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999988888887666443
No 77
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.63 E-value=2.2e+02 Score=31.30 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=31.5
Q ss_pred HHHhhhHhhhhHHHHHhh-hc---chhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHH
Q 006796 81 AEKQVKFFQGCMAAAFAE-RD---NSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 151 (630)
Q Consensus 81 ~EKQVkFFQs~VA~AFAE-RD---~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~ 151 (630)
++.+.+|.++....+-+. ++ ..-.-.++-.+.-..+.+++.++..++.+++..+.++++.-..||.+|..+
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 97 LKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667776665432111 00 001122233344445555555555555555555544444444444444333
No 78
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=45.55 E-value=2.2e+02 Score=26.98 Aligned_cols=86 Identities=24% Similarity=0.414 Sum_probs=61.4
Q ss_pred cccccC------cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhh---hhhHHHHHHHHHHHHH
Q 006796 194 MWSFND------TSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI---IHSDKFISNAIAELRL 264 (630)
Q Consensus 194 ~WSfn~------tStskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkq---i~~dk~i~ngis~Lq~ 264 (630)
-|||.| .|.++.++++-.+|+.+-.+|..-. .||..|+..|..|+ .-..+.|.+.+++++.
T Consensus 27 Gws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tK----------khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~ 96 (126)
T PF07889_consen 27 GWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTK----------KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRE 96 (126)
T ss_pred CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 477773 4577777777777777766665433 57777777777766 3367788899999988
Q ss_pred hhhhhHHHHHHhhhhcchhhhhHHHHHHhhh-cc
Q 006796 265 CHSQLRVHVVNSLEEGRSHIKSISDVIEEKT-QH 297 (630)
Q Consensus 265 ~h~~~R~~Im~lL~ee~s~i~s~v~~ieekl-~~ 297 (630)
.=++-+..|-+ +..+|-.+|.|| ++
T Consensus 97 dv~~i~~dv~~--------v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 97 DVSQIGDDVDS--------VQQMVEGLEGKIDEI 122 (126)
T ss_pred hHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 88877777654 567777788887 55
No 79
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=45.42 E-value=1.6e+02 Score=25.33 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=38.9
Q ss_pred HHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhh---HHHHHHHHHHHHHhhhhhHHHHHHhhh
Q 006796 220 VENLQSKLRMGLEIENHLKKSVRELEKKIIHS---DKFISNAIAELRLCHSQLRVHVVNSLE 278 (630)
Q Consensus 220 i~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~---dk~i~ngis~Lq~~h~~~R~~Im~lL~ 278 (630)
++.|+.|+...++--..|+..+..|..+..-+ ..-++.-...|++.|.....+|-++|.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666676777777777777664332 233444556677888888888887775
No 80
>PRK10884 SH3 domain-containing protein; Provisional
Probab=45.21 E-value=92 Score=31.24 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=33.6
Q ss_pred hHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHH
Q 006796 25 VCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 70 (630)
Q Consensus 25 ~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdL 70 (630)
+-+|++.|.+.++..++.+...-.+|..|++||.. .+.++.+|
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~---~~~~~~~l 158 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV---AQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 45888889998888888888888889888888877 35555444
No 81
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=45.12 E-value=4e+02 Score=28.15 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 006796 208 ALEDELEKTRSSVENLQSK 226 (630)
Q Consensus 208 ALEeEle~lr~si~~LQsk 226 (630)
.+++|.+++.++++..++.
T Consensus 110 ~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556667777666655544
No 82
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=45.07 E-value=3.9e+02 Score=27.99 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=53.0
Q ss_pred hhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHH
Q 006796 28 SKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE 107 (630)
Q Consensus 28 rtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaE 107 (630)
|+.-++.=++.|...+.+.-.|-.-|.+.+..+-.++-.|.+.|. .+++.+.=.+..++. ...-|. .|.+
T Consensus 143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~-------~L~~e~~~Lk~~~~e-~~~~D~--~eL~ 212 (325)
T PF08317_consen 143 RMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKA-------ELEEELENLKQLVEE-IESCDQ--EELE 212 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh-hhhcCH--HHHH
Confidence 666666666777777777777777777777777666666666544 334444444443333 333444 3334
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 108 KAKEKEELMSQKFNEFQTRLEELSSENI 135 (630)
Q Consensus 108 KaKE~Ee~m~qkf~~f~~R~eE~~s~~~ 135 (630)
.+|+.=.....+++.+...+.+++.++.
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~ 240 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELE 240 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 83
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=45.00 E-value=2.3e+02 Score=33.33 Aligned_cols=87 Identities=23% Similarity=0.298 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchHHHHHHHH----HhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHH
Q 006796 30 AGLEQEIEILKQKIAACARENSNLQEELSEAY----RIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME 105 (630)
Q Consensus 30 A~LEQeIE~LkkKl~~c~ReN~NLQeELsEAY----RiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmE 105 (630)
+..+.+|..+-+++-...++|.+|+-++-|-= .++++|+.+ .-. ++
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~------------------~r~------------~~ 467 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF------------------RRE------------VR 467 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHH------------HH
Confidence 45666777888888888889999888876543 334444433 000 11
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHH
Q 006796 106 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 152 (630)
Q Consensus 106 aEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~ 152 (630)
.+.-...++...+.|++.|+..+.+++.--+.|...|+.++
T Consensus 468 ------~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 468 ------DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred ------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233345556677777777777777777777777776665
No 84
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=44.96 E-value=38 Score=31.45 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=29.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 106 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKK 139 (630)
Q Consensus 106 aEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~ 139 (630)
+.|.+.+|+...+.+.+++.++++++..+++|++
T Consensus 100 ~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 100 ARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5567788889999999999999999999988764
No 85
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=43.99 E-value=5.3e+02 Score=29.22 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=74.5
Q ss_pred hcccccccccccccccccc-ccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHhHHhHHHHHHhhhh
Q 006796 176 LETSWEDKCACLLLDSAEM-WSFNDTSTSKYISALEDELEKTRSSVENLQSKLR----MGLEIENHLKKSVRELEKKIIH 250 (630)
Q Consensus 176 ~~~s~~~Kcs~LL~Ds~~~-WSfn~tStskyisALEeEle~lr~si~~LQskLR----~GLEIEnHLkk~vr~LeKkqi~ 250 (630)
.-++.++||..|=.+|..- .+-+++-.-.-.+++|.=.+-..+-++.-|+..- .+-.+++-|-.-++.|.....-
T Consensus 192 eA~~ID~~c~~L~~~S~~I~~~p~~~R~~~~~~s~e~W~~fs~~nl~~ae~er~~S~~LR~~l~~~l~~tan~lr~Q~~~ 271 (421)
T KOG2685|consen 192 EAYEIDEKCLALNNNSPNISYKPDPTRVPPNSSSPESWAKFSGDNLDRAERERAASAALREALDQTLRETANDLRTQADA 271 (421)
T ss_pred hhheechhhhhhcCCCCCeeccCCCccCCCCCCCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578899999988886644 2222221222233355555555555555554432 2455677788889999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHhhhhcch
Q 006796 251 SDKFISNAIAELRLCHSQLRVHVVNSLEEGRS 282 (630)
Q Consensus 251 ~dk~i~ngis~Lq~~h~~~R~~Im~lL~ee~s 282 (630)
.+.-+.++|++.+......-.+.-+.|+|=..
T Consensus 272 ve~af~~ri~etqdar~kL~~ql~k~leEi~~ 303 (421)
T KOG2685|consen 272 VELAFKKRIRETQDARNKLEWQLAKTLEEIAD 303 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888887443
No 86
>PHA02562 46 endonuclease subunit; Provisional
Probab=43.79 E-value=4.5e+02 Score=28.42 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=4.6
Q ss_pred HHHHHHHHhhh
Q 006796 161 VINKFYEIRQQ 171 (630)
Q Consensus 161 VI~KFyeiR~~ 171 (630)
.-.++-++|..
T Consensus 335 ~~~~i~el~~~ 345 (562)
T PHA02562 335 QSKKLLELKNK 345 (562)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 87
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=43.56 E-value=2.4e+02 Score=25.13 Aligned_cols=93 Identities=20% Similarity=0.328 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHH
Q 006796 36 IEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEEL 115 (630)
Q Consensus 36 IE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~ 115 (630)
...+++++......=..|..++.|+-.+..-|..| ...-+.|- .|...|-++|..=+
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l-----------~~d~~vyk-~VG~vlv~~~~~e~----------- 68 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL-----------PDDTPVYK-SVGNLLVKTDKEEA----------- 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCcchhHH-HhchhhheecHHHH-----------
Confidence 45555566666655566777777777777766665 23445554 36667877774322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhh
Q 006796 116 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 155 (630)
Q Consensus 116 m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~ 155 (630)
...+++|++.++..+......-..|+..+..+..+.
T Consensus 69 ----~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 69 ----IQELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444555555555444444455555555554443
No 88
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=43.26 E-value=3.4e+02 Score=26.82 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=29.3
Q ss_pred HHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 95 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 136 (630)
Q Consensus 95 AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~ 136 (630)
+.|.|=+.+++ .|.+++.++|..+-..+.++...+.+
T Consensus 19 ~~a~rg~~lLk-----~Krd~L~~e~~~~~~~~~~~r~~~~~ 55 (209)
T TIGR00309 19 KMAKRGYSLLK-----LKRDALIMEFRQILERAKDIKNKMEQ 55 (209)
T ss_pred HHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778887 88899999999998888888777653
No 89
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=42.41 E-value=76 Score=26.27 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=32.9
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 006796 240 SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSL 277 (630)
Q Consensus 240 ~vr~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~Im~lL 277 (630)
.+.+|+++.+.+|..|.--|.+|+..|..-|.=|..-+
T Consensus 9 s~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAi 46 (49)
T PF11629_consen 9 SYEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDAI 46 (49)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 46789999999999999999999999999998876543
No 90
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=42.29 E-value=1.8e+02 Score=30.56 Aligned_cols=34 Identities=38% Similarity=0.452 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 105 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELK 138 (630)
Q Consensus 105 EaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk 138 (630)
|.++-++.|+.....++.|+..+.+.+.+....+
T Consensus 86 e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~ 119 (314)
T PF04111_consen 86 ELEELDEEEEEYWREYNELQLELIEFQEERDSLK 119 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666667777777776666655443333
No 91
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.85 E-value=4.2e+02 Score=27.44 Aligned_cols=34 Identities=38% Similarity=0.400 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHh
Q 006796 121 NEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 154 (630)
Q Consensus 121 ~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq 154 (630)
+++++++.+++..+.+++++|.+|-.||+.....
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5788999999999999999999999999987543
No 92
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=40.92 E-value=2.5e+02 Score=24.65 Aligned_cols=55 Identities=13% Similarity=0.324 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcch
Q 006796 36 IEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 102 (630)
Q Consensus 36 IE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~s 102 (630)
+..|++++..+...=.-|..++.|..++..-|..| +..-+.| -.|..+|-++|..
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l-----------~~d~~vy-~~VG~vfv~~~~~ 62 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKL-----------ADDAEVY-KLVGNVLVKQEKE 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCcchHH-HHhhhHHhhccHH
Confidence 45555555555555555666667766666655544 2344445 4577788888754
No 93
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=40.67 E-value=2.2e+02 Score=23.92 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHH-Hhhhhhhhhcccccccccccccccccc
Q 006796 116 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYE-IRQQSLEVLETSWEDKCACLLLDSAEM 194 (630)
Q Consensus 116 m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFye-iR~~~~e~~~~s~~~Kcs~LL~Ds~~~ 194 (630)
+...+..+..+..+.+..+...... ...++++.+....-|..+|+ ++.. .++.-..||.+-...
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~-------~~~l~~~~~~~~~~I~~~f~~l~~~--------L~~~e~~ll~~l~~~ 69 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISI-------IQEVEENAADVEAQIKAAFDELRNA--------LNKRKKQLLEDLEEQ 69 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 3444455555555555544443333 33333444444444444443 2221 112223334433333
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----HHHHHHhHHhHHHH
Q 006796 195 WSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMG-----LEIENHLKKSVREL 244 (630)
Q Consensus 195 WSfn~tStskyisALEeEle~lr~si~~LQskLR~G-----LEIEnHLkk~vr~L 244 (630)
+.=...+....+..|+..++.++.-++-.+.-|.-| |...+++..+++.|
T Consensus 70 ~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~l 124 (127)
T smart00502 70 KENKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQNL 124 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 333334566788888888888888888888888775 44445555555544
No 94
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=40.26 E-value=5.2e+02 Score=28.06 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=40.7
Q ss_pred hHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHH-HHhHHHHHHH
Q 006796 25 VCISKAGLEQEIEILKQKIAACARENSNLQEELSEA-YRIKGQLADL 70 (630)
Q Consensus 25 ~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEA-YRiK~qLAdL 70 (630)
.-.+..+||--+-.||.=++.++|-+..|+||.--+ -+||.-+++|
T Consensus 148 ~KKlg~nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l 194 (302)
T PF07139_consen 148 NKKLGPNIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAEL 194 (302)
T ss_pred ccccCccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999999999999999665 4899999999
No 95
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.89 E-value=3e+02 Score=25.20 Aligned_cols=39 Identities=36% Similarity=0.417 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHh
Q 006796 30 AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLH 71 (630)
Q Consensus 30 A~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh 71 (630)
..+.++++.+........+.|+.+|.+|.+ .|.++++++
T Consensus 30 ~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~---~r~~l~~~~ 68 (150)
T PF07200_consen 30 QELQQEREELLAENEELAEQNLSLEPELEE---LRSQLQELY 68 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHH---HHHHHHHHH
Confidence 346777888888888888899999998887 567777663
No 96
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=39.76 E-value=3.9e+02 Score=26.53 Aligned_cols=116 Identities=23% Similarity=0.299 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhH
Q 006796 31 GLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK 110 (630)
Q Consensus 31 ~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaK 110 (630)
+|+= |-+||.+++..-+-=.-...++++.=.=-..|.+=-...--.+.++.++++||+.
T Consensus 25 NL~l-IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k-------------------- 83 (201)
T PF13851_consen 25 NLEL-IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK-------------------- 83 (201)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHH-HHHHHHHHHhhhh
Q 006796 111 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFK-EVINKFYEIRQQS 172 (630)
Q Consensus 111 E~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~-kVI~KFyeiR~~~ 172 (630)
=-+.+.....|+..++..+.+.+.-+..|...+..++..-+-+. +.-..+|+|.+..
T Consensus 84 -----dK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~ 141 (201)
T PF13851_consen 84 -----DKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKT 141 (201)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 97
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=39.52 E-value=9.8 Score=44.55 Aligned_cols=120 Identities=24% Similarity=0.339 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHH----hHHHHHHHhHHHHHhhhHHHHh-------hhHhhhhHHHHHh
Q 006796 29 KAGLEQEIEILKQKIAACARENSNLQEELSEAYR----IKGQLADLHAAEVIKNMEAEKQ-------VKFFQGCMAAAFA 97 (630)
Q Consensus 29 tA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYR----iK~qLAdLh~ae~skN~e~EKQ-------VkFFQs~VA~AFA 97 (630)
.+.|++.++.++..|...+|...+|+..|..+=. ++.||-+ +--.-.++++| +.|++..+-+.+.
T Consensus 238 k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqlee----E~e~k~~l~~qlsk~~~El~~~k~K~e~e~~ 313 (859)
T PF01576_consen 238 KSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEE----EEEAKSELERQLSKLNAELEQWKKKYEEEAE 313 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3457777888888888888888777776665432 2333222 22222344454 4455555555555
Q ss_pred hhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhH
Q 006796 98 ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 158 (630)
Q Consensus 98 ERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~ 158 (630)
.|-..+-| -..-+..++.+.+..++++...+...++....|+.++..+.-..+..
T Consensus 314 ~~~EelEe------aKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~ 368 (859)
T PF01576_consen 314 QRTEELEE------AKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKA 368 (859)
T ss_dssp -------------------------------------------------------------
T ss_pred hhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444333 33456778999999999999999999999999999888777666633
No 98
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=39.09 E-value=1.1e+02 Score=24.67 Aligned_cols=36 Identities=33% Similarity=0.466 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHh
Q 006796 119 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 154 (630)
Q Consensus 119 kf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq 154 (630)
.+.+++.++..+++.+...+..+..|+..+..+..+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555566666555555555555555555555444
No 99
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.00 E-value=4e+02 Score=26.07 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=13.2
Q ss_pred HHHHHHHHhhhhhcccchHHHHHHHH
Q 006796 36 IEILKQKIAACARENSNLQEELSEAY 61 (630)
Q Consensus 36 IE~LkkKl~~c~ReN~NLQeELsEAY 61 (630)
+-.++.++..-..+|..|+.++.++.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l 47 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEIL 47 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555443
No 100
>PRK09343 prefoldin subunit beta; Provisional
Probab=37.94 E-value=3.2e+02 Score=25.05 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=51.7
Q ss_pred HHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHH
Q 006796 36 IEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEEL 115 (630)
Q Consensus 36 IE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~ 115 (630)
++.+++++......=..|.-++.|+-.+..-|..| +.+-+.|. .|.-.|-..|.+=+
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L-----------~~d~~VYk-~VG~vlv~qd~~e~----------- 72 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKALEELEKL-----------PDDTPIYK-IVGNLLVKVDKTKV----------- 72 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCcchhHH-HhhHHHhhccHHHH-----------
Confidence 44555555555555556666666666665555544 23344444 35666655553311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006796 116 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 156 (630)
Q Consensus 116 m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e 156 (630)
..++.+|++-+...+.........|+..+.++..+..
T Consensus 73 ----~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 73 ----EKELKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345555555556666666666666666666666655
No 101
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=37.36 E-value=2.8e+02 Score=26.84 Aligned_cols=91 Identities=21% Similarity=0.371 Sum_probs=50.7
Q ss_pred hhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHH-HHHHhHHHHHhhh-H----HHHhhhHhhhhHHHHHhhhcc
Q 006796 28 SKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ-LADLHAAEVIKNM-E----AEKQVKFFQGCMAAAFAERDN 101 (630)
Q Consensus 28 rtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~q-LAdLh~ae~skN~-e----~EKQVkFFQs~VA~AFAERD~ 101 (630)
+-..+++.+..|+++.-..-.++..|++ +-|.|-++++ |-.+...+ .|. . +.++....|..+.
T Consensus 3 ~~~ei~~~l~~l~~~vq~~e~~~k~Le~-~QE~f~~~~q~lq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------- 71 (182)
T PF01017_consen 3 KQQEIEQKLQDLRNRVQETENDIKSLED-LQEEFDFQYQTLQQLQETE--QNSNALKEQLKQEQQQLQQMLN-------- 71 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCTTTTT----STTTHHHHHCCCCCHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccc--chhhhhHHHHHHHHHHHHHHHH--------
Confidence 3455677777777777766666666664 5688999886 22222222 221 1 2333333333332
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 102 SVMEAEKAKEKEELMSQKFNEFQTRLEELSSENI 135 (630)
Q Consensus 102 slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~ 135 (630)
.| ..+...+..++.+.-.+++.+++.+.
T Consensus 72 ~L------~~~R~~lv~~l~~~~~~~~~lq~~ll 99 (182)
T PF01017_consen 72 EL------DQKRKELVSKLKETLNCLEQLQSQLL 99 (182)
T ss_dssp HH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23445666677777777777776553
No 102
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=37.18 E-value=2.9e+02 Score=28.49 Aligned_cols=106 Identities=32% Similarity=0.428 Sum_probs=58.4
Q ss_pred hhhhHHHHHHHHHHHhhhhhc--------ccchHHHHHHHH-HhHHHHHHHhHHHHHhhhHHHHhhhHh-hhhHHHHHhh
Q 006796 29 KAGLEQEIEILKQKIAACARE--------NSNLQEELSEAY-RIKGQLADLHAAEVIKNMEAEKQVKFF-QGCMAAAFAE 98 (630)
Q Consensus 29 tA~LEQeIE~LkkKl~~c~Re--------N~NLQeELsEAY-RiK~qLAdLh~ae~skN~e~EKQVkFF-Qs~VA~AFAE 98 (630)
-+-||||++.|.-+=..+... ..+|++.|.|-= ||=.-=||.-+-| -|+. -|--+|-| =...|+|-|+
T Consensus 30 R~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWE-qkYL-EEs~mrq~a~dAaa~aa~~ 107 (205)
T PF12240_consen 30 RTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWE-QKYL-EESAMRQFAMDAAATAAAQ 107 (205)
T ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHhhhHHH
Confidence 357999999997665544332 334555555421 2211111221100 0110 12222222 2356888899
Q ss_pred hcchhHH---HHHh----HHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 006796 99 RDNSVME---AEKA----KEKEELMS--QKFNEFQTRLEELSSENIE 136 (630)
Q Consensus 99 RD~slmE---aEKa----KE~Ee~m~--qkf~~f~~R~eE~~s~~~~ 136 (630)
||+.|+. .++. |+.|+... .++++.+.|++.|...+.+
T Consensus 108 rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~LhaqI~E 154 (205)
T PF12240_consen 108 RDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKALHAQIAE 154 (205)
T ss_pred HHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 9996553 3344 45666655 4688999999999888854
No 103
>PRK09039 hypothetical protein; Validated
Probab=36.54 E-value=5.6e+02 Score=27.37 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=23.4
Q ss_pred hHhhhhhhHHHHHHHHHHHhhhh-------hcccchHHHHH
Q 006796 25 VCISKAGLEQEIEILKQKIAACA-------RENSNLQEELS 58 (630)
Q Consensus 25 ~~qrtA~LEQeIE~LkkKl~~c~-------ReN~NLQeELs 58 (630)
+.+-.+++++++..|+.+++... ..+..||++|.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~ 84 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVA 84 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45667888888888888888855 34445555544
No 104
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=35.58 E-value=2.2e+02 Score=26.50 Aligned_cols=79 Identities=11% Similarity=0.127 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccc
Q 006796 113 EELMSQKFNEFQTRLEELSSENIELK-KQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDS 191 (630)
Q Consensus 113 Ee~m~qkf~~f~~R~eE~~s~~~~qk-~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds 191 (630)
-...++++.+++..+.++.+.+.++- +++..++.+.+.+..+.+-+-..|.-|++-.....- .+=++=|.-.
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~e~~-------k~Ks~~l~~G 77 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAEANRDELT-------KKKSLKLPFG 77 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH------------EE-SS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHhcc-------cceEEEcCCe
Confidence 35578899999999999999988765 788888999999999999999999999887764433 3334444444
Q ss_pred ccccccc
Q 006796 192 AEMWSFN 198 (630)
Q Consensus 192 ~~~WSfn 198 (630)
...|.-.
T Consensus 78 ~v~~R~~ 84 (149)
T PF07352_consen 78 TVGFRKS 84 (149)
T ss_dssp EE-----
T ss_pred eEEEEec
Confidence 4555544
No 105
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=34.96 E-value=8.8e+02 Score=29.23 Aligned_cols=123 Identities=24% Similarity=0.241 Sum_probs=70.7
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHH----------HHhhhHHHHhhhHhhhhHHHHH
Q 006796 27 ISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAE----------VIKNMEAEKQVKFFQGCMAAAF 96 (630)
Q Consensus 27 qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae----------~skN~e~EKQVkFFQs~VA~AF 96 (630)
...|+||.-|+.+---+.--...--.||.=++++=-||..+--....+ ...+.+++.+ +=..=
T Consensus 530 sgkadLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~ee-------lE~le 602 (769)
T PF05911_consen 530 SGKADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEE-------LEKLE 602 (769)
T ss_pred cchhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHH-------HHHHH
Confidence 345677777766544444444444678887777777777766443322 2222222222 22233
Q ss_pred hhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006796 97 AERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 156 (630)
Q Consensus 97 AERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e 156 (630)
+++++-=|+-.++...=+.-..+|.+.+.+++++++++.-.++.|..+-..+...++.++
T Consensus 603 ~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e 662 (769)
T PF05911_consen 603 SEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYE 662 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443344444444555556677788888888888888888888777766666655544
No 106
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=34.32 E-value=6.4e+02 Score=27.37 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhhhcccchHHHHHHHHHhHHH
Q 006796 36 IEILKQKIAACARENSNLQEELSEAYRIKGQ 66 (630)
Q Consensus 36 IE~LkkKl~~c~ReN~NLQeELsEAYRiK~q 66 (630)
++.||+|+...-.||.-|.+| |-+++.-
T Consensus 162 le~Lq~Klk~LEeEN~~LR~E---a~~L~~e 189 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSE---ASQLKTE 189 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhhHH
Confidence 788999999999999888765 4444443
No 107
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=34.22 E-value=4.1e+02 Score=25.20 Aligned_cols=59 Identities=29% Similarity=0.433 Sum_probs=38.1
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhH-----HHHHhhhHHHHhhhHhhhh
Q 006796 27 ISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHA-----AEVIKNMEAEKQVKFFQGC 91 (630)
Q Consensus 27 qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~-----ae~skN~e~EKQVkFFQs~ 91 (630)
-+-.+||++.+.|-++ |++--+++=.+|=..-..|+++.. .+...-......||||..-
T Consensus 27 ~~l~~LEae~q~L~~k------E~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~e 90 (126)
T PF09403_consen 27 SELNQLEAEYQQLEQK------EEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDE 90 (126)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHH
Confidence 3456789888888874 555556666666666666776633 3444555666778888653
No 108
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=34.14 E-value=4.1e+02 Score=25.08 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHH
Q 006796 114 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEK 150 (630)
Q Consensus 114 e~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~ 150 (630)
....|.+++++..+.|+-..+++.|...+.||..+.+
T Consensus 54 ~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 54 ASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLK 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777888887777777777666666665544
No 109
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=33.65 E-value=3.6e+02 Score=29.17 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHhhhHHHHHH
Q 006796 112 KEELMSQKFNEFQTRLEELS----SENIELKKQNATLRFDLEKQEE 153 (630)
Q Consensus 112 ~Ee~m~qkf~~f~~R~eE~~----s~~~~qk~~n~aLQ~dl~~~~e 153 (630)
.-..|-.+|++||+--+||+ +++...+..|..|+.+-..++-
T Consensus 28 ~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~ 73 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTT 73 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777776665554 4444556666666655544433
No 110
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=33.33 E-value=8.1e+02 Score=28.28 Aligned_cols=174 Identities=22% Similarity=0.238 Sum_probs=103.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhh
Q 006796 199 DTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLE 278 (630)
Q Consensus 199 ~tStskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~Im~lL~ 278 (630)
+.+..+-|++|.++++-++..++-+.-|-++--|+---|+.--++++.|--.-..||.|-|.
T Consensus 45 ~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLl------------------ 106 (552)
T KOG2129|consen 45 GESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLL------------------ 106 (552)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHH------------------
Confidence 67788999999999999999999888888877666666666555555555445566665442
Q ss_pred hcchhhhhHHHHHHhhh-cc-ccccccccccCCCccccccccccccceeeccCCCCccccCCCCCccchhhhcccCCchH
Q 006796 279 EGRSHIKSISDVIEEKT-QH-CDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASE 356 (630)
Q Consensus 279 ee~s~i~s~v~~ieekl-~~-~~n~~~E~n~~~pq~e~~~~e~ecrDVHvs~d~~p~~~~k~~~p~~~~~~~d~~~d~s~ 356 (630)
.+|+... +- ..-++||.- -||- + + +-|+
T Consensus 107 ----------kkiqal~keketla~~Ye~e------------ee~l----T------------------n------~Lsr 136 (552)
T KOG2129|consen 107 ----------KKIQALFKEKETLATVYEVE------------EEFL----T------------------N------PLSR 136 (552)
T ss_pred ----------HHHHHhhccccccchhhhhh------------hhhc----c------------------C------chhH
Confidence 3333322 11 002223322 1221 1 1 4566
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHhhhHH--HHHHHHHHHHhhhhhchHHHHHHH---------------HHHhHHH
Q 006796 357 TLAQALQEKVAALLLLSQQEERHLLERNVNSA--LQKKIEELQRNLFQVTTEKVKALM---------------ELAQLKQ 419 (630)
Q Consensus 357 aLAQALqEKveALlLlSQqeER~llE~~~n~~--Lq~~ieeLQrNl~QVt~EKVkaLm---------------ELAqLkq 419 (630)
-|-|-=|||..-=++|-|++|- +.-+-+|.+ ||.+.---|-+|-|..-|+|..-- -.-||.|
T Consensus 137 kl~qLr~ek~~lEq~leqeqef-~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ 215 (552)
T KOG2129|consen 137 KLKQLRHEKLPLEQLLEQEQEF-FVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQ 215 (552)
T ss_pred HHHHHHhhhccHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778778998888888777763 334444433 222222235567898889886432 3445666
Q ss_pred HHHHHHHHHhhhhhhhccccCCCcccc
Q 006796 420 DYQLLQEKICNEMKEEKVLAGNGEKRI 446 (630)
Q Consensus 420 ~y~lL~e~~~~~~k~~~~~~~~~~k~~ 446 (630)
+-.-|++|- ++..++...+|-|
T Consensus 216 ekr~Lq~Kl-----Dqpvs~p~~prdi 237 (552)
T KOG2129|consen 216 EKRYLQKKL-----DQPVSTPSLPRDI 237 (552)
T ss_pred HHHHHHHHh-----cCcccCCCchhhh
Confidence 666666543 4445555555543
No 111
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=32.82 E-value=5e+02 Score=25.72 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=43.3
Q ss_pred cchhhhhcchhh--HhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHH
Q 006796 14 KLDLVTLLSPLV--CISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 70 (630)
Q Consensus 14 ~~d~~t~~~~~~--~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdL 70 (630)
+.||-+.+.|+- -||.++|+|-...|..+|..+...|..|+++|. |+..++.-+
T Consensus 59 s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~---klt~~~~~l 114 (182)
T PF15035_consen 59 SPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQ---KLTQDWERL 114 (182)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 466767676664 479999999999999999999999999999886 556665544
No 112
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.47 E-value=1.1e+03 Score=29.74 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=14.9
Q ss_pred HHhhhhcchhhhhHHHHHHhhh
Q 006796 274 VNSLEEGRSHIKSISDVIEEKT 295 (630)
Q Consensus 274 m~lL~ee~s~i~s~v~~ieekl 295 (630)
+++++..++-|+.+|..++++=
T Consensus 1003 ~~~Ie~Dk~kI~ktI~~lDe~k 1024 (1174)
T KOG0933|consen 1003 KEIIEKDKSKIKKTIEKLDEKK 1024 (1174)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 3556666777777777777654
No 113
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=32.45 E-value=3.9e+02 Score=26.25 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=29.2
Q ss_pred HHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 95 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 136 (630)
Q Consensus 95 AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~ 136 (630)
+.|.|=+.+++ .|.+++.++|..+-..+.++...+.+
T Consensus 21 ~~a~rg~~lLk-----~Krd~L~~e~~~~~~~~~~~r~~~~~ 57 (204)
T PRK00373 21 KLAERGHKLLK-----DKRDELIMEFFDILDEAKKLREEVEE 57 (204)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778887 88899999999998888888766644
No 114
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=32.25 E-value=1.7e+02 Score=33.56 Aligned_cols=69 Identities=32% Similarity=0.524 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhchHHH--HHHHHHh----hhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHHHhhhhhh
Q 006796 361 ALQEKVAALLLLSQQEE--RHLLERN----VNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKE 434 (630)
Q Consensus 361 ALqEKveALlLlSQqeE--R~llE~~----~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e~~~~~~k~ 434 (630)
-|.+||+.|. |+ |-+||+| ..+-||.....-|+-|--..+||=-.-|||-++|-.|-.|+|+-...|-+
T Consensus 366 kLk~niEeLI-----edKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQq 440 (527)
T PF15066_consen 366 KLKENIEELI-----EDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQ 440 (527)
T ss_pred HHHHHHHHHH-----HhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3566666654 34 3467774 67888888899999999999999999999999999999999965444544
No 115
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.20 E-value=1.1e+03 Score=29.75 Aligned_cols=71 Identities=27% Similarity=0.382 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHH-------hHHH------HHhhhHHHHhhhHhhhhHHHHHhhh
Q 006796 33 EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL-------HAAE------VIKNMEAEKQVKFFQGCMAAAFAER 99 (630)
Q Consensus 33 EQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdL-------h~ae------~skN~e~EKQVkFFQs~VA~AFAER 99 (630)
-.|.|..+..+.-.-|---+|+.++.+|- +++||| .||| ..||+++|.-||-.---|+.-=|=|
T Consensus 402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aE---s~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEale 478 (1243)
T KOG0971|consen 402 QKELEKKNSELEELRRQKERLSRELDQAE---STIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALE 478 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666667788877764 455555 4555 3689999999998888888744433
Q ss_pred --cchhHHH
Q 006796 100 --DNSVMEA 106 (630)
Q Consensus 100 --D~slmEa 106 (630)
|--|.|.
T Consensus 479 e~~EQL~Es 487 (1243)
T KOG0971|consen 479 EMNEQLQES 487 (1243)
T ss_pred HHHHHHHHH
Confidence 3344443
No 116
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=32.19 E-value=6.7e+02 Score=27.03 Aligned_cols=186 Identities=20% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh-----------------HHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 006796 206 ISALEDELEKTRSSVENLQSKLRMG-----------------LEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQ 268 (630)
Q Consensus 206 isALEeEle~lr~si~~LQskLR~G-----------------LEIEnHLkk~vr~LeKkqi~~dk~i~ngis~Lq~~h~~ 268 (630)
|.+|..+...+...++.+.--|.|. =+.|..|.+-+..++.-+-++.+.+.....-|+..
T Consensus 73 i~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~l--- 149 (384)
T PF03148_consen 73 IDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLLQRTLEQAEEQLRLL--- 149 (384)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred hHHHHHHhhhhcchhhhhHHHHHHhhh-ccccccccccccCCCccccccccccccceeeccCCCCccccCCCCCcc----
Q 006796 269 LRVHVVNSLEEGRSHIKSISDVIEEKT-QHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAY---- 343 (630)
Q Consensus 269 ~R~~Im~lL~ee~s~i~s~v~~ieekl-~~~~n~~~E~n~~~pq~e~~~~e~ecrDVHvs~d~~p~~~~k~~~p~~---- 343 (630)
++--..+-.-+.+|. -+.||. .|........-++--.+|...|+...|..
T Consensus 150 ------------r~ar~~Le~Dl~dK~~A~~ID~-------------~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~ 204 (384)
T PF03148_consen 150 ------------RAARYRLEKDLSDKFEALEIDT-------------QCLSLNNNSTNISYKPGSTRIPKNSSTPESWEE 204 (384)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHH-------------HHHhCCCccCCCcccCCcccccccCCChHHHHH
Q ss_pred ------chhhhcccCCchHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhH
Q 006796 344 ------CDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQL 417 (630)
Q Consensus 344 ------~~~~~d~~~d~s~aLAQALqEKveALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqL 417 (630)
... ..-.+-+..|++-|. -++-.-...-.--=..||.+|.+.|.|.+.-..+....+-+++-|++.+
T Consensus 205 ~s~~ni~~a------~~e~~~S~~LR~~i~-~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~ 277 (384)
T PF03148_consen 205 FSNENIQRA------EKERQSSAQLREDID-SILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEM 277 (384)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHH
Q 006796 418 KQDYQLLQE 426 (630)
Q Consensus 418 kq~y~lL~e 426 (630)
...+..|+.
T Consensus 278 e~~i~~L~~ 286 (384)
T PF03148_consen 278 EKNIEDLEK 286 (384)
T ss_pred HHHHHHHHH
No 117
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=31.87 E-value=6.6e+02 Score=26.80 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=78.7
Q ss_pred hhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHh-hhcchhHHH
Q 006796 28 SKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFA-ERDNSVMEA 106 (630)
Q Consensus 28 rtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFA-ERD~slmEa 106 (630)
|+.-|+-=++.|...+.+.-.|...|-..+..+=.|+-.|-+.|.+=-.+=..+.+.+..++.|=..-+. =| ..|-
T Consensus 138 R~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk-~~l~-- 214 (312)
T smart00787 138 RMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK-EKLK-- 214 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH-HHHH--
Confidence 4555555566777777777778888888888888888888888774444444455555555555322111 11 1111
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhh
Q 006796 107 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 155 (630)
Q Consensus 107 EKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~ 155 (630)
+....-+.+.+++.+++.++.++.+.+.+-+.....++.+++..+...
T Consensus 215 -~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 215 -KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122334556777888888888888888877777777777776665433
No 118
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=31.82 E-value=6.4e+02 Score=26.68 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006796 203 SKYISALEDELEKTRSSVENLQSKLR 228 (630)
Q Consensus 203 skyisALEeEle~lr~si~~LQskLR 228 (630)
-..|+.|++++..|++.|..|+...+
T Consensus 199 re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 199 REEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34799999999999999999998765
No 119
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=31.67 E-value=5.1e+02 Score=25.51 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=67.2
Q ss_pred hhhhhhhcccchhhhhcchhhHhhhhhhHHHHHHHHHHHhhhhhcccchHH--HHHHHHH-hHHHHH---HHhH------
Q 006796 5 KILSSCVCSKLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQE--ELSEAYR-IKGQLA---DLHA------ 72 (630)
Q Consensus 5 ~~~~~~v~~~~d~~t~~~~~~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQe--ELsEAYR-iK~qLA---dLh~------ 72 (630)
.+|...+-..+....-+.-++-.| |.+|. .|-++|..+++...+--+ -|..|+. |+.+.. +.|-
T Consensus 8 ~~l~~r~~~g~~~~~el~~f~keR-a~iE~---eYak~L~kLakk~~~~~~~gsl~~a~~~i~~e~e~~a~~H~~~a~~L 83 (236)
T cd07651 8 DVIQTRIKDSLRTLEELRSFYKER-ASIEE---EYAKRLEKLSRKSLGGSEEGGLKNSLDTLRLETESMAKSHLKFAKQI 83 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666665555555 55665 455666655555443211 2334432 222222 2221
Q ss_pred --------HHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHH
Q 006796 73 --------AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQ 124 (630)
Q Consensus 73 --------ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~ 124 (630)
..+.+ +.++..|-+++-+.-+...+...+-.++|+|.+=+..-+++..+.
T Consensus 84 ~~~v~~~l~~~~~--~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~ 141 (236)
T cd07651 84 RQDLEEKLAAFAS--SYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYT 141 (236)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 22222 346778888899999999999999999999988776666655443
No 120
>PHA02047 phage lambda Rz1-like protein
Probab=31.53 E-value=2e+02 Score=26.94 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhh
Q 006796 205 YISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHI 284 (630)
Q Consensus 205 yisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~Im~lL~ee~s~i 284 (630)
|.-.-.++-+.+.++++.++-++ +|+++.|..|+.| -.++|.+|.+-|++..+|-
T Consensus 28 ~~g~~h~~a~~la~qLE~a~~r~-------~~~Q~~V~~l~~k------------------ae~~t~Ei~~aL~~n~~Wa 82 (101)
T PHA02047 28 ALGIAHEEAKRQTARLEALEVRY-------ATLQRHVQAVEAR------------------TNTQRQEVDRALDQNRPWA 82 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH------------------HHHHHHHHHHHHHhCCCcc
Confidence 33345677788888888877655 3789999999887 4678999999999999997
Q ss_pred hh
Q 006796 285 KS 286 (630)
Q Consensus 285 ~s 286 (630)
++
T Consensus 83 D~ 84 (101)
T PHA02047 83 DR 84 (101)
T ss_pred cC
Confidence 64
No 121
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=31.47 E-value=4.9e+02 Score=25.16 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=30.3
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHH
Q 006796 26 CISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 70 (630)
Q Consensus 26 ~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdL 70 (630)
-.|.-+||.|++..+.......++|-|-+.|+. +++.++-.+
T Consensus 23 e~~v~~LEreLe~~q~~~e~~~~daEn~k~eie---~L~~el~~l 64 (140)
T PF10473_consen 23 EDHVESLERELEMSQENKECLILDAENSKAEIE---TLEEELEEL 64 (140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 346678888888888888888888888776654 466666544
No 122
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.78 E-value=3.1e+02 Score=26.26 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhH
Q 006796 111 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 148 (630)
Q Consensus 111 E~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl 148 (630)
+..+....++.+..+.++..+.+.+..|.|-..|+.+|
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555566677777777777777777777766666554
No 123
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.77 E-value=1.4e+02 Score=27.32 Aligned_cols=44 Identities=25% Similarity=0.464 Sum_probs=36.1
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHH
Q 006796 381 LERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQ 425 (630)
Q Consensus 381 lE~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~ 425 (630)
||.++.+.++. |++|...+.++-.|=...=||-++|++-...+.
T Consensus 13 le~~l~~l~~~-~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 13 LEQQLGQLLEE-LEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777777666 999999999999998888899998888766655
No 124
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=30.29 E-value=5.5e+02 Score=26.11 Aligned_cols=97 Identities=13% Similarity=0.225 Sum_probs=64.5
Q ss_pred HHhhhhhhh---hccccccccccccccccccccccCcch--HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhH
Q 006796 167 EIRQQSLEV---LETSWEDKCACLLLDSAEMWSFNDTST--SKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSV 241 (630)
Q Consensus 167 eiR~~~~e~---~~~s~~~Kcs~LL~Ds~~~WSfn~tSt--skyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~v 241 (630)
|+|.....| .-+..+ .++-.=+...|..++..+ |.||+.|=++.......++.+-...++--++.+.|=..+
T Consensus 53 dLr~~iy~~~a~~~l~~~---~i~~~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~ 129 (234)
T PF10474_consen 53 DLREPIYKCVASRLLDLE---QILNSIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRL 129 (234)
T ss_pred HHHHHHHHHHHHHHcCHH---HHHHHHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 567666655 112221 333334556799996655 999999999999999999887766666666666553322
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhHHH
Q 006796 242 RELEKKIIHSDKFISNAIAELRLCHSQLRVH 272 (630)
Q Consensus 242 r~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~ 272 (630)
=. ..-..+..|.+.++++-..-|+-
T Consensus 130 i~------~~~~~Lveg~s~vkKCs~eGRal 154 (234)
T PF10474_consen 130 IF------FAFETLVEGYSRVKKCSNEGRAL 154 (234)
T ss_pred HH------HHHHHHHHHHHhccCCChhhHHH
Confidence 11 24456678888888888777764
No 125
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.23 E-value=1.3e+03 Score=29.67 Aligned_cols=154 Identities=23% Similarity=0.225 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh------hcccc----cccccccccccccc
Q 006796 125 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEV------LETSW----EDKCACLLLDSAEM 194 (630)
Q Consensus 125 ~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~------~~~s~----~~Kcs~LL~Ds~~~ 194 (630)
+|+++++..+.+.++.-+++|-.-++ +++.+.+...|..-+.++.+-... +.+.. -.||++-+--+.
T Consensus 858 ~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~-- 934 (1293)
T KOG0996|consen 858 KRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSD-- 934 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCc--
Confidence 44555666666666666666643344 566666666666655544322211 11111 123443333222
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHH
Q 006796 195 WSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVV 274 (630)
Q Consensus 195 WSfn~tStskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~Im 274 (630)
|. -+...+-++-||.+.+.++.+++.|-.. .+|+...+-++++.- +=-.++|-+++.-|...+..+-
T Consensus 935 ~~--i~k~q~~l~~le~~~~~~e~e~~~L~e~-------~~~~~~k~~E~~~~~----~e~~~~~~E~k~~~~~~k~~~e 1001 (1293)
T KOG0996|consen 935 RN--IAKAQKKLSELEREIEDTEKELDDLTEE-------LKGLEEKAAELEKEY----KEAEESLKEIKKELRDLKSELE 1001 (1293)
T ss_pred cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1334555666666666666666655433 344544554544432 1235777888888888887777
Q ss_pred HhhhhcchhhhhHHHHHHhhh
Q 006796 275 NSLEEGRSHIKSISDVIEEKT 295 (630)
Q Consensus 275 ~lL~ee~s~i~s~v~~ieekl 295 (630)
++=+.+-..-...|+ |+.|+
T Consensus 1002 ~i~k~~~~lk~~rId-~~~K~ 1021 (1293)
T KOG0996|consen 1002 NIKKSENELKAERID-IENKL 1021 (1293)
T ss_pred HHHHHHHHHHHhhcc-HHHHH
Confidence 665555444444566 77776
No 126
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=30.08 E-value=2.9e+02 Score=26.74 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=29.5
Q ss_pred HHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 95 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 136 (630)
Q Consensus 95 AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~ 136 (630)
.+|+|=+.+++ .|-+++.++|.++-..+.++...+.+
T Consensus 11 ~~a~rg~~lLk-----~Krd~L~~e~~~~~~~~~~~r~~~~~ 47 (196)
T PF01813_consen 11 KLAKRGHKLLK-----KKRDALIREFRKLIKEAEELREELEE 47 (196)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888898 88899999998888888877666544
No 127
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.90 E-value=1.2e+03 Score=29.42 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=27.5
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHH-HhHHHHH-HHhHHHHHh
Q 006796 27 ISKAGLEQEIEILKQKIAACARENSNLQEELSEAY-RIKGQLA-DLHAAEVIK 77 (630)
Q Consensus 27 qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAY-RiK~qLA-dLh~ae~sk 77 (630)
|--+..+-+|+.-++-|.+..|+=..| +=.+..| ++|.||. .+|+..+.+
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~l-e~~~~kf~~l~~ql~l~~~~l~l~~ 728 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSL-EAQSQKFRDLKQQLELKLHELALLE 728 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666677777666653333 3344555 4677776 445544443
No 128
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=29.66 E-value=8.2e+02 Score=27.25 Aligned_cols=122 Identities=25% Similarity=0.335 Sum_probs=67.1
Q ss_pred hhhhHHHHHHHHHHHh-hhhhcccchHHHHHHHHHhHHHHHH---HhHHHHHhhhHH----HHhhhHhhhhHHHHHhhhc
Q 006796 29 KAGLEQEIEILKQKIA-ACARENSNLQEELSEAYRIKGQLAD---LHAAEVIKNMEA----EKQVKFFQGCMAAAFAERD 100 (630)
Q Consensus 29 tA~LEQeIE~LkkKl~-~c~ReN~NLQeELsEAYRiK~qLAd---Lh~ae~skN~e~----EKQVkFFQs~VA~AFAERD 100 (630)
-..|+.+||.||.++- -..-=+.-||||-...=|+-.|+-| ||.+|..-=++- |-.|- ||+
T Consensus 228 ~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~-Yqs---------- 296 (395)
T PF10267_consen 228 QSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMA-YQS---------- 296 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHH----------
Confidence 3578888888887533 3445567788887777778888874 588887644332 11111 222
Q ss_pred chhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh
Q 006796 101 NSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEV 175 (630)
Q Consensus 101 ~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~ 175 (630)
.|++++-.|.| ..|+.|+..++ +..+....|-+-...--....+.+.||=...+=+--+.|
T Consensus 297 -----~eRaRdi~E~~----Es~qtRisklE-----~~~~Qq~~q~e~~~n~~~r~~l~k~inllL~l~~vlLv~ 357 (395)
T PF10267_consen 297 -----YERARDIWEVM----ESCQTRISKLE-----QQQQQQVVQLEGTENSRARALLGKLINLLLTLLTVLLVF 357 (395)
T ss_pred -----HHHHhHHHHHH----HHHHHHHHHHH-----HHHhhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555554 46777777554 223444444444331111233444444444444444444
No 129
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.54 E-value=73 Score=25.57 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=28.8
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHH
Q 006796 26 CISKAGLEQEIEILKQKIAACARENSNLQEELSEA 60 (630)
Q Consensus 26 ~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEA 60 (630)
..+...+.++|..|++++.....+|..|++|+...
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566788899999999999999999998887654
No 130
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=29.48 E-value=96 Score=28.55 Aligned_cols=54 Identities=33% Similarity=0.483 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHhHHhHHHHHHhh-hhhHHHHHHH
Q 006796 205 YISALEDELEKTRSSVENLQSKL-RMGLEIENHLKKSVRELEKKI-IHSDKFISNA 258 (630)
Q Consensus 205 yisALEeEle~lr~si~~LQskL-R~GLEIEnHLkk~vr~LeKkq-i~~dk~i~ng 258 (630)
-+..++++++.+.++++.|+.++ |.--+++|..++-.+..+... -...+|+..=
T Consensus 12 ~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~l 67 (165)
T PF01025_consen 12 EIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDL 67 (165)
T ss_dssp HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666654 344578888777666654333 3355555543
No 131
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.32 E-value=1.4e+02 Score=32.54 Aligned_cols=44 Identities=30% Similarity=0.277 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Q 006796 356 ETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQ 402 (630)
Q Consensus 356 ~aLAQALqEKveALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~Q 402 (630)
-||-|-++-|++|+-.|-|.=|.+--|+.--.+ ..|-||+|++-
T Consensus 19 sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~---~aETLeln~ea 62 (389)
T KOG4687|consen 19 SALHQKCGAKTDAIRILGQDLEKFENEKDGLAA---RAETLELNLEA 62 (389)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHH
Confidence 478899999999999999999999888876666 89999999876
No 132
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=28.96 E-value=45 Score=28.45 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHh
Q 006796 208 ALEDELEKTRSSVENLQSKLRMGLEIENHLKKS 240 (630)
Q Consensus 208 ALEeEle~lr~si~~LQskLR~GLEIEnHLkk~ 240 (630)
|.-||+|.||.+|..|+.+.+ -||.||.+.|.
T Consensus 11 AVrEEVevLK~~I~eL~~~n~-~Le~EN~~Lk~ 42 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNS-QLEEENNLLKQ 42 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 456899999999999998876 48999987654
No 133
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.56 E-value=9.3e+02 Score=27.83 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=39.2
Q ss_pred HhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHh
Q 006796 76 IKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFN-EFQTRLEELSSENIELKKQNATLRFDLEKQEEL 154 (630)
Q Consensus 76 skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~-~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq 154 (630)
+.|.+++|++ |-.-...++.-+=+|.|.+.-++.+.+.+. +..-+.--+......+|+.+.+.+.....++||
T Consensus 370 ~~~~e~~kk~------~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 370 SSDLEAEKKI------VERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQ 443 (493)
T ss_pred hhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555543 333444555555666666555555544433 223333344444455556666666666666666
Q ss_pred hH
Q 006796 155 NE 156 (630)
Q Consensus 155 ~e 156 (630)
..
T Consensus 444 lr 445 (493)
T KOG0804|consen 444 LR 445 (493)
T ss_pred HH
Confidence 65
No 134
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=28.51 E-value=1.6e+03 Score=30.09 Aligned_cols=238 Identities=20% Similarity=0.144 Sum_probs=0.0
Q ss_pred ccchhhhhcchhhHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhH
Q 006796 13 SKLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 92 (630)
Q Consensus 13 ~~~d~~t~~~~~~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~V 92 (630)
+..+.+++. |-+--+.+|+-|.-|+.++.-..|+|.-++.|++. ++.+|.-+
T Consensus 41 ~e~~k~~v~---~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~---l~~~L~~~---------------------- 92 (1822)
T KOG4674|consen 41 DEDGKTEVN---HEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSD---LRNELEQL---------------------- 92 (1822)
T ss_pred HHHhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhh----------------------
Q ss_pred HHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhh
Q 006796 93 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQS 172 (630)
Q Consensus 93 A~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~ 172 (630)
=++|++--.++.+-+-.-..|.+.-.+.++--+-+.-.+..++.-=.+|+.+.-.+.+|+- .-..+--++=-+-
T Consensus 93 ---~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~---ss~~~~~e~e~r~ 166 (1822)
T KOG4674|consen 93 ---SSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLK---SSTKTLSELEARL 166 (1822)
T ss_pred ---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q ss_pred hhh--hccccccccccccccccccccccCcchHHHHHHHHHHHHHHHHH----HHHHHhhhhhhHHHHHHhHHhHHHHHH
Q 006796 173 LEV--LETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSS----VENLQSKLRMGLEIENHLKKSVRELEK 246 (630)
Q Consensus 173 ~e~--~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~s----i~~LQskLR~GLEIEnHLkk~vr~LeK 246 (630)
.+| .++++.-||..|--.-.-.-+=|.- .+.=..+-=+++..++-. +..|+++|-=--+=..-++.++.-|.+
T Consensus 167 ~e~~s~~vs~q~k~~rl~QEksll~s~~~w-L~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q 245 (1822)
T KOG4674|consen 167 QETQSEDVSSQLKEERLEQEKSLLESENKW-LSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQ 245 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhh
Q 006796 247 KIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIK 285 (630)
Q Consensus 247 kqi~~dk~i~ngis~Lq~~h~~~R~~Im~lL~ee~s~i~ 285 (630)
++-.+.+-|.+...+|...--..=..+-.+..|=..+.+
T Consensus 246 ~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~k 284 (1822)
T KOG4674|consen 246 QNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKK 284 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
No 135
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=28.39 E-value=1.3e+03 Score=29.12 Aligned_cols=65 Identities=23% Similarity=0.320 Sum_probs=39.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhh
Q 006796 107 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLE 174 (630)
Q Consensus 107 EKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e 174 (630)
.++|+..+.....+..|+.+.+|+++...+....=...++++ .+.......+.+||=+++...-+
T Consensus 258 ~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~---~e~~~k~~~~~ek~~~~~~~v~~ 322 (1072)
T KOG0979|consen 258 DRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQREL---NEALAKVQEKFEKLKEIEDEVEE 322 (1072)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888888888888888885444433333333333 33344344566666666655443
No 136
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.97 E-value=2.8e+02 Score=25.92 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=28.5
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006796 196 SFNDTSTSKYISALEDELEKTRSSVENLQSKLRM 229 (630)
Q Consensus 196 Sfn~tStskyisALEeEle~lr~si~~LQskLR~ 229 (630)
.|+=.+..+...+||..+.....+|+.||..++-
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~ 52 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIEK 52 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554568889999999999999999999987764
No 137
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=27.60 E-value=79 Score=30.21 Aligned_cols=34 Identities=35% Similarity=0.419 Sum_probs=29.5
Q ss_pred hhhhhhchhhHHHHHhhhHHHH----HHHHHHHHHHHH
Q 006796 498 FARMRIENATLKESLENMDHLI----SSIRRLRLSLSK 531 (630)
Q Consensus 498 ~ARmKvENAtLkEsvesmehLT----SSihRLrl~LlK 531 (630)
+.-+|-||..|||++.+|+-+- .+|+.||.-|-+
T Consensus 87 I~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 87 IEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3678999999999999999997 789999987754
No 138
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=27.51 E-value=1.2e+03 Score=28.29 Aligned_cols=115 Identities=24% Similarity=0.358 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhH
Q 006796 31 GLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK 110 (630)
Q Consensus 31 ~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaK 110 (630)
+|..-|+.---|++..=|.+..|+.|+ |++++.+.-. -+ .-....|++.-|.+--+.+=+.=|.+=+|..+.+
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei---~~L~~~~~~~-~~---~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~ 300 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEI---YRLRSRGELS-EA---DRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKK 300 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccccc-cc---chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666677654 7777766411 00 1123334444444443333333344444544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHH
Q 006796 111 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFK 159 (630)
Q Consensus 111 E~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~ 159 (630)
+++-.++.|++.+.++-.+.++=-+.|+.++.....+.+.+-
T Consensus 301 -------~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lq 342 (775)
T PF10174_consen 301 -------SELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQ 342 (775)
T ss_pred -------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455666666666666665555666666666655555443
No 139
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=27.39 E-value=6.3e+02 Score=25.19 Aligned_cols=70 Identities=19% Similarity=0.339 Sum_probs=36.6
Q ss_pred hhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Q 006796 84 QVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQK----------FNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 153 (630)
Q Consensus 84 QVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk----------f~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~e 153 (630)
.|+|.|+-+-....=+|.+.-=.+..|..|+.+.++ +.+++..+.+++-.....+..+.+-..++..++.
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888877777777775544444445555544443 4444444444444433333333343344444433
No 140
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.37 E-value=1.8e+02 Score=33.06 Aligned_cols=69 Identities=20% Similarity=0.235 Sum_probs=41.5
Q ss_pred hHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHH
Q 006796 86 KFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 162 (630)
Q Consensus 86 kFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI 162 (630)
-=|=|-|-+.|.++++ +-+-+++-.+.++++++++.++.++....+.+..+|..+.++++.+..++.=+
T Consensus 52 ~~~~~vV~~~FddkVn--------qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 52 PDMTGVVDTTFDDKVR--------QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred CCccceecchhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456677778877732 12223334455666666666666665555666667777777777776665544
No 141
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=27.33 E-value=9.1e+02 Score=27.00 Aligned_cols=121 Identities=26% Similarity=0.215 Sum_probs=81.0
Q ss_pred HHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHH
Q 006796 36 IEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEEL 115 (630)
Q Consensus 36 IE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~ 115 (630)
.-.||.|-.---|+--|+| +|+.+---++.|-+|-.-----| ||+|= -..|++= .|-|+.||--+-
T Consensus 48 ~kvlq~k~~t~~kek~~~Q-~l~kt~larsKLeelCRelQr~n----k~~ke--E~~~q~k-------~eEerRkea~~~ 113 (391)
T KOG1850|consen 48 DKVLQVKDLTEKKEKRNNQ-ILLKTELARSKLEELCRELQRAN----KQTKE--EACAQMK-------KEEERRKEAVEQ 113 (391)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHH--HHHHHHH-------HHHHHHHHHHHH
Confidence 3456677777777778888 88888888888887732111111 22210 0111110 233444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 006796 116 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ 170 (630)
Q Consensus 116 m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~ 170 (630)
.---++++++-+.+-.+.++...+-|-.|.-.+..+-+|.+.--++|+|-++--.
T Consensus 114 fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke 168 (391)
T KOG1850|consen 114 FQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE 168 (391)
T ss_pred HHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445678888888888999999999999999999999999999999998776544
No 142
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=27.33 E-value=1.3e+02 Score=28.09 Aligned_cols=55 Identities=25% Similarity=0.280 Sum_probs=40.9
Q ss_pred hHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHh
Q 006796 86 KFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 154 (630)
Q Consensus 86 kFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq 154 (630)
+|-|+=-+. -|||.+-=|.||| +++.|+-.|+-+..-|+.+|..|..-..+|+--
T Consensus 7 ~fLQ~Ew~r--~ErdR~~WeiERa------------EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 7 HFLQTEWHR--FERDRNQWEIERA------------EMKARIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHHH--HHHHHHHhHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554333 3899999998886 456788889999999998888887777777543
No 143
>smart00338 BRLZ basic region leucin zipper.
Probab=27.31 E-value=1.9e+02 Score=23.27 Aligned_cols=37 Identities=35% Similarity=0.474 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhh
Q 006796 119 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 155 (630)
Q Consensus 119 kf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~ 155 (630)
.+.+++.++..+++.+.+.......|+.++..++.++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666665555555555555555555554443
No 144
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.18 E-value=1.1e+02 Score=27.53 Aligned_cols=39 Identities=33% Similarity=0.515 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHhHHh
Q 006796 202 TSKYISALEDELEKTRSSVENLQSKLR-----MGLEIENHLKKS 240 (630)
Q Consensus 202 tskyisALEeEle~lr~si~~LQskLR-----~GLEIEnHLkk~ 240 (630)
|.+=+..|+-++..++-.++.+-.+|+ ++|.+||+||++
T Consensus 63 t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~~lk~~ 106 (106)
T PF10805_consen 63 TRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLENELKKD 106 (106)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 444455555555555555555555554 379999999763
No 145
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=27.10 E-value=1.1e+03 Score=27.90 Aligned_cols=51 Identities=24% Similarity=0.217 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHH--HHHHhHHhHHHHHHhhhhhHHHH
Q 006796 205 YISALEDELEKTRSSVENLQSKLRMGLE--IENHLKKSVRELEKKIIHSDKFI 255 (630)
Q Consensus 205 yisALEeEle~lr~si~~LQskLR~GLE--IEnHLkk~vr~LeKkqi~~dk~i 255 (630)
.+..++...|.|..++.+|+...-.|+- +.--|-+++...+|+..++=..|
T Consensus 277 l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I 329 (683)
T PF08580_consen 277 LGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKSHYFPAI 329 (683)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHhccHHHH
Confidence 4556666666666677777777654433 33346777777777765443333
No 146
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=27.07 E-value=21 Score=40.63 Aligned_cols=93 Identities=23% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccCcchHHHH
Q 006796 127 LEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYI 206 (630)
Q Consensus 127 ~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyi 206 (630)
+..|...+..+++.|..|......++++.......=.+.-..+. .....+.|+.- ..--.+.|-|.-.....=+
T Consensus 327 ~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~-----qi~eLe~~l~~-~~~~~~~l~~e~~~L~ek~ 400 (713)
T PF05622_consen 327 LEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKK-----QIQELEQKLSE-ESRRADKLEFENKQLEEKL 400 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666533322222222222 12222222222 1112334555544455555
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 006796 207 SALEDELEKTRSSVENLQS 225 (630)
Q Consensus 207 sALEeEle~lr~si~~LQs 225 (630)
.+|+.+.+.+....+.|+.
T Consensus 401 ~~l~~eke~l~~e~~~L~e 419 (713)
T PF05622_consen 401 EALEEEKERLQEERDSLRE 419 (713)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666655555554
No 147
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=27.01 E-value=1e+03 Score=27.40 Aligned_cols=145 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhhhhcchhhHhhhhhhHHHHHHHHHHHhhh-------------hhcccchHHHHHHHHHhHHHHHHH---hHHHHHhhh
Q 006796 16 DLVTLLSPLVCISKAGLEQEIEILKQKIAAC-------------ARENSNLQEELSEAYRIKGQLADL---HAAEVIKNM 79 (630)
Q Consensus 16 d~~t~~~~~~~qrtA~LEQeIE~LkkKl~~c-------------~ReN~NLQeELsEAYRiK~qLAdL---h~ae~skN~ 79 (630)
++++.++....+|.++--+ .+.++..+..- ...|.-+|+=..+--++..++++| |+..--+=.
T Consensus 241 ~l~~ql~~a~~~~~~a~a~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~ 319 (754)
T TIGR01005 241 ELNTELSRARANRAAAEGT-ADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVV 319 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH
Q ss_pred HHHHhhhHhhhhHHHHHhh-hcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhH
Q 006796 80 EAEKQVKFFQGCMAAAFAE-RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 158 (630)
Q Consensus 80 e~EKQVkFFQs~VA~AFAE-RD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~ 158 (630)
.+..|+.=-+...++.... ....-.+.+-++.+++.+.+++++++.|+..+...-.+..++....+..-..++.-....
T Consensus 320 ~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~ 399 (754)
T TIGR01005 320 AAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNY 399 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 006796 159 KEV 161 (630)
Q Consensus 159 ~kV 161 (630)
...
T Consensus 400 ~e~ 402 (754)
T TIGR01005 400 RQA 402 (754)
T ss_pred HHH
No 148
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=26.86 E-value=3.8e+02 Score=22.41 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHH
Q 006796 115 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEV 161 (630)
Q Consensus 115 ~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kV 161 (630)
.+.++++.++.|+.+.+..+...++-+.++..+.....++.+....-
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888888777777777776655443
No 149
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=26.80 E-value=8.5e+02 Score=26.50 Aligned_cols=119 Identities=23% Similarity=0.286 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchHHHH-----------HHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhh
Q 006796 30 AGLEQEIEILKQKIAACARENSNLQEEL-----------SEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE 98 (630)
Q Consensus 30 A~LEQeIE~LkkKl~~c~ReN~NLQeEL-----------sEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAE 98 (630)
|.||-++..++.+.-....+|+.|--|+ ++-|+.-+||-| ++++....-.|.+=|=-..-||
T Consensus 48 aelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Led----dlsqt~aikeql~kyiReLEQa--- 120 (333)
T KOG1853|consen 48 AELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLED----DLSQTHAIKEQLRKYIRELEQA--- 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh---
Confidence 4455555556666666666777665443 456666666653 2344444433443333333222
Q ss_pred hcchhHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhH---HHhhhHHHHHHhhH
Q 006796 99 RDNSVMEAEKAKEK-EELMSQKFNEFQTRLEELSSENIE-------LKKQNA---TLRFDLEKQEELNE 156 (630)
Q Consensus 99 RD~slmEaEKaKE~-Ee~m~qkf~~f~~R~eE~~s~~~~-------qk~~n~---aLQ~dl~~~~eq~e 156 (630)
.--|--|++|++. -+-.-|++++--+|.-=++|.+++ -.|+.+ .|..+|++++.|+|
T Consensus 121 -NDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqelavr~kq~E 188 (333)
T KOG1853|consen 121 -NDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVRTKQTE 188 (333)
T ss_pred -ccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1111123333332 122335555554554445554433 334444 48888888888887
No 150
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=26.73 E-value=6.1e+02 Score=24.77 Aligned_cols=47 Identities=30% Similarity=0.263 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHH
Q 006796 200 TSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFI 255 (630)
Q Consensus 200 tStskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~i 255 (630)
-+..+...-||+-.+.+-++|+.|.++++.= ..|.=+=|.++|.||=
T Consensus 77 ~~~~~~~~~LEe~ke~l~k~i~~les~~e~I---------~~~m~~LK~~LYaKFg 123 (131)
T KOG1760|consen 77 VKLDKLQDQLEEKKETLEKEIEELESELESI---------SARMDELKKVLYAKFG 123 (131)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhc
Confidence 3456677889999999999999999988763 1222233456677763
No 151
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.05 E-value=1.8e+02 Score=23.39 Aligned_cols=35 Identities=34% Similarity=0.431 Sum_probs=30.4
Q ss_pred HHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHH
Q 006796 392 KIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 426 (630)
Q Consensus 392 ~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e 426 (630)
.|++|+..+...+.+-...-.++..|++++..|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888988888888888888999999999998873
No 152
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=25.76 E-value=1.6e+02 Score=28.15 Aligned_cols=59 Identities=17% Similarity=0.350 Sum_probs=33.8
Q ss_pred hhhcchhHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006796 97 AERDNSVMEAEKAKEKEELMSQKFNEFQTRLE----ELSSENIELKKQNATLRFDLEKQEELNE 156 (630)
Q Consensus 97 AERD~slmEaEKaKE~Ee~m~qkf~~f~~R~e----E~~s~~~~qk~~n~aLQ~dl~~~~eq~e 156 (630)
.+||+.|=.-.+...-=+.+-+++.+++.... +|+.++.+++ ++.++..-|......+.
T Consensus 37 ~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~-~~~ai~~al~~akakn~ 99 (155)
T PF06810_consen 37 KEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK-KDSAIKSALKGAKAKNP 99 (155)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCH
Confidence 44555555544433334455666666666665 6666665555 56666666666655554
No 153
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=25.71 E-value=49 Score=28.67 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=24.0
Q ss_pred HHHHHHhhhhhhh-hcccccccccccccccccccccc
Q 006796 163 NKFYEIRQQSLEV-LETSWEDKCACLLLDSAEMWSFN 198 (630)
Q Consensus 163 ~KFyeiR~~~~e~-~~~s~~~Kcs~LL~Ds~~~WSfn 198 (630)
.+||..=...+.. ..++++|=.-+|..-+.++|||+
T Consensus 46 ~~ly~~l~~~L~~~~gi~p~Dv~I~l~e~~~edWSFg 82 (82)
T PF14552_consen 46 KALYRALAERLAEKLGIRPEDVMIVLVENPREDWSFG 82 (82)
T ss_dssp HHHHHHHHHHHHHHH---GGGEEEEEEEE-GGGEEEC
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEEEEECCcccCCCC
Confidence 3455554445544 78999999999999999999995
No 154
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.50 E-value=3.1e+02 Score=24.30 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHH----HhhHHH---hhhHHHHHHhhHhHHHHHHHHHHHhhhhhh
Q 006796 121 NEFQTRLEELSSENIELK----KQNATL---RFDLEKQEELNESFKEVINKFYEIRQQSLE 174 (630)
Q Consensus 121 ~~f~~R~eE~~s~~~~qk----~~n~aL---Q~dl~~~~eq~e~~~kVI~KFyeiR~~~~e 174 (630)
..++.|+.|++...--|. ++|++| |+.++++.+|.. -+++||-+++.....
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr---~L~~kl~~~~~~~~~ 61 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLR---LLTEKLKDLQPSAIA 61 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcccccC
Confidence 357788888887776665 456554 444444545544 789999888765443
No 155
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=25.45 E-value=9.8e+02 Score=26.74 Aligned_cols=108 Identities=22% Similarity=0.295 Sum_probs=76.8
Q ss_pred hhHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHH------hHHHHHhhh--------HHHHhhhHhh
Q 006796 24 LVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL------HAAEVIKNM--------EAEKQVKFFQ 89 (630)
Q Consensus 24 ~~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdL------h~ae~skN~--------e~EKQVkFFQ 89 (630)
.+-.||-.+|.+...|.+++.++. ++.+++.++-.+..++.=+ ..+||.+=+ .-||-+.+-.
T Consensus 184 ~fl~rtl~~e~~~~~L~~~~~A~~----~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK 259 (511)
T PF09787_consen 184 EFLKRTLKKEIERQELEERPKALR----HYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLK 259 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 356788888988899998888774 5777777777665555422 123333322 4688888999
Q ss_pred h-hHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 90 G-CMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 136 (630)
Q Consensus 90 s-~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~ 136 (630)
+ |.-.+|..+-++ ||.+-.+.--+.+-..++.++..+..+..++.+
T Consensus 260 ~~~~~~~~~~~~~~-~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d 306 (511)
T PF09787_consen 260 EGCLEEGFDSSTNS-IELEELKQERDHLQEEIQLLERQIEQLRAELQD 306 (511)
T ss_pred hcccccccccccch-hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 888888887777 888888777777777788887777766665533
No 156
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=24.97 E-value=1.6e+03 Score=29.01 Aligned_cols=174 Identities=22% Similarity=0.205 Sum_probs=79.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhHHHhhhHHH--HHHhhHhHHHHHHHHHHHhhh
Q 006796 104 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIE----------LKKQNATLRFDLEK--QEELNESFKEVINKFYEIRQQ 171 (630)
Q Consensus 104 mEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~----------qk~~n~aLQ~dl~~--~~eq~e~~~kVI~KFyeiR~~ 171 (630)
.++|+-+++.-..+-.+++++.++..+++.... .++.|..-..+.++ ++.+.+.-++++..+++ +-
T Consensus 609 ~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~e--q~ 686 (1317)
T KOG0612|consen 609 SELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELE--QE 686 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 344455555555555555555555555544322 22222222233333 44555555555555543 22
Q ss_pred hhhhhccccccc-cccccccccccccccCcchHHHHHH----HHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHH
Q 006796 172 SLEVLETSWEDK-CACLLLDSAEMWSFNDTSTSKYISA----LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEK 246 (630)
Q Consensus 172 ~~e~~~~s~~~K-cs~LL~Ds~~~WSfn~tStskyisA----LEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeK 246 (630)
..+|.-+-..++ |.+ -...+|--.+.++--|..+ +++|++.|++. .+|++ +=.|||.++.+.+..
T Consensus 687 ~~E~~~~~L~~~e~~~---~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d--~~~~~-----~~~~~l~r~~~~~~~ 756 (1317)
T KOG0612|consen 687 NAEHHRLRLQDKEAQM---KEIESKLSEEKSAREKAENLLLEIEAELEYLSND--YKQSQ-----EKLNELRRSKDQLIT 756 (1317)
T ss_pred HHHHHHHHHhhHHHHH---HHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhh--hhhhc-----cchhhhhhhHHHHHH
Confidence 223311111111 111 1234566666767667777 67777777653 33333 445676555444433
Q ss_pred hh----hhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHHHH
Q 006796 247 KI----IHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIE 292 (630)
Q Consensus 247 kq----i~~dk~i~ngis~Lq~~h~~~R~~Im~lL~ee~s~i~s~v~~ie 292 (630)
.- ..++.+|.-.++ ++..|+ .|..-.+. +.-.-+.++.++.+.
T Consensus 757 ~vl~Lq~~LEqe~~~r~~-~~~eLs-sq~~~~~t-~~~Ekq~~~~~~~l~ 803 (1317)
T KOG0612|consen 757 EVLKLQSMLEQEISKRLS-LQRELK-SQEQEVNT-KMLEKQLKKLLDELA 803 (1317)
T ss_pred HHHHHHHHHHHHHHHhhh-hHHHhh-hHHHhhcc-HHHHHHHHHHHHHHH
Confidence 22 235555554443 334444 33333333 333344444444444
No 157
>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction. Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....
Probab=24.70 E-value=2.6e+02 Score=26.33 Aligned_cols=44 Identities=32% Similarity=0.437 Sum_probs=35.9
Q ss_pred CchHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Q 006796 353 EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQ 402 (630)
Q Consensus 353 d~s~aLAQALqEKveALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~Q 402 (630)
++=..++.-||+++..+ ++|||=+|..++.-- ..|++|...+..
T Consensus 46 ~eL~~~~k~lh~ri~~l-----eeEryd~E~kv~k~~-~Ei~elk~kv~d 89 (132)
T PF00992_consen 46 AELQELCKELHERIDKL-----EEERYDLEEKVAKQD-YEIEELKKKVND 89 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-HHHHHHCCCCCC
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhc-ccHHHHHhHHHH
Confidence 45567799999999987 899999999998873 348999887755
No 158
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.63 E-value=8.3e+02 Score=25.61 Aligned_cols=41 Identities=29% Similarity=0.381 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHH
Q 006796 112 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 152 (630)
Q Consensus 112 ~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~ 152 (630)
.=+++-+++.+++..+.+++..+.+.+.....++.+++.++
T Consensus 224 ~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666676666666666666666655554
No 159
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=24.19 E-value=2e+02 Score=26.12 Aligned_cols=40 Identities=25% Similarity=0.514 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHH
Q 006796 122 EFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEV 161 (630)
Q Consensus 122 ~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kV 161 (630)
.|++|+.+++.++..+++-|..|+..+..-.+.-..++++
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~l 85 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKL 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999998887666655545544
No 160
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=24.05 E-value=9e+02 Score=25.81 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhh-------hHHHHHHHHHHHHHhhhhhHHHHHHh
Q 006796 204 KYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIH-------SDKFISNAIAELRLCHSQLRVHVVNS 276 (630)
Q Consensus 204 kyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~-------~dk~i~ngis~Lq~~h~~~R~~Im~l 276 (630)
..+..|+.+...|...+..++.-+..-.+-.+.|+..++.|.+-..- .-+-+++.|+.....|...|..+..
T Consensus 151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e- 229 (312)
T smart00787 151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE- 229 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34555555555566666666655555555555566666665554432 2334558888888888777777544
Q ss_pred hhhcchhhhhHHHHHHhhh
Q 006796 277 LEEGRSHIKSISDVIEEKT 295 (630)
Q Consensus 277 L~ee~s~i~s~v~~ieekl 295 (630)
++++-+.+.+.|....++.
T Consensus 230 ~~~~l~~l~~~I~~~~~~k 248 (312)
T smart00787 230 LEEELQELESKIEDLTNKK 248 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555565555555555
No 161
>PTZ00046 rifin; Provisional
Probab=23.99 E-value=1.4e+02 Score=32.70 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 113 EELMSQKFNEFQTRLEELSSENIELK 138 (630)
Q Consensus 113 Ee~m~qkf~~f~~R~eE~~s~~~~qk 138 (630)
..--+|.|+|..+||.+....|+||-
T Consensus 65 ~rqTsQRF~EYdERM~~kRqkcKeqC 90 (358)
T PTZ00046 65 DRQTSQRFEEYDERMKEKRQKCKEQC 90 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45568899999999999988888874
No 162
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.86 E-value=1.5e+03 Score=28.18 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=37.4
Q ss_pred HHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 73 AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIEL 137 (630)
Q Consensus 73 ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~q 137 (630)
+++..=.+-+-.|.=|+--+..-|..+|.-.-+.-..++.....-+++..++.++....++....
T Consensus 785 ~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 849 (1201)
T PF12128_consen 785 KELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQR 849 (1201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455566677777788887773333333344444555667777777766665555433
No 163
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=23.75 E-value=1.2e+02 Score=25.10 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=24.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhh
Q 006796 200 TSTSKYISALEDELEKTRSSVENLQSK 226 (630)
Q Consensus 200 tStskyisALEeEle~lr~si~~LQsk 226 (630)
+++++-|+.|+.|+..|++++..+|+.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~~ 51 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRSR 51 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 568899999999999999999998863
No 164
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=23.66 E-value=7.8e+02 Score=26.84 Aligned_cols=85 Identities=26% Similarity=0.332 Sum_probs=54.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccc
Q 006796 107 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCAC 186 (630)
Q Consensus 107 EKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~ 186 (630)
+|.|-+.+.---+...+..-.--+-..|+...+.++.|.+||..-+-|.-.+-+-++
T Consensus 49 qKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~----------------------- 105 (307)
T PF10481_consen 49 QKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLN----------------------- 105 (307)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH-----------------------
Confidence 355555554444555554433334457888889999999999877666542222222
Q ss_pred ccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006796 187 LLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLR 228 (630)
Q Consensus 187 LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskLR 228 (630)
|.-+-|..||+|+-.+++.+++.|.-.-
T Consensus 106 --------------s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 106 --------------SCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2334688888888888888888876654
No 165
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=23.62 E-value=3.1e+02 Score=24.15 Aligned_cols=16 Identities=25% Similarity=0.352 Sum_probs=11.9
Q ss_pred hccccccccccccccc
Q 006796 176 LETSWEDKCACLLLDS 191 (630)
Q Consensus 176 ~~~s~~~Kcs~LL~Ds 191 (630)
.++..+.+|+||=-|.
T Consensus 55 g~~~~~~~~gVLSEDa 70 (90)
T PF14131_consen 55 GDLPTDGKCGVLSEDA 70 (90)
T ss_pred CCCCCCcccCccCchH
Confidence 4577788999986554
No 166
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=23.53 E-value=3.2e+02 Score=29.38 Aligned_cols=49 Identities=29% Similarity=0.497 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHH
Q 006796 202 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKF 254 (630)
Q Consensus 202 tskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~ 254 (630)
..+|++.|+++++.+.+.+++|..+|.-.= +.+++.+.++++...+++=
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~ 288 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKR 288 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHH
Confidence 567999999999999999999998764432 5555555555555544443
No 167
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=23.51 E-value=1.9e+02 Score=25.68 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhh
Q 006796 206 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIH 250 (630)
Q Consensus 206 isALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~ 250 (630)
|.-+..++++.+.+++.+|.+||. |.++-+++|.-+|+
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~-------Le~qk~E~EN~EIv 40 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKE-------LEAQKTEAENLEIV 40 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 567889999999999999999885 45556666666554
No 168
>PLN03188 kinesin-12 family protein; Provisional
Probab=23.48 E-value=1.7e+03 Score=28.82 Aligned_cols=123 Identities=24% Similarity=0.254 Sum_probs=68.4
Q ss_pred hHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHH--------HhHHHHHHH---hHHHHHhh---hH---------H
Q 006796 25 VCISKAGLEQEIEILKQKIAACARENSNLQEELSEAY--------RIKGQLADL---HAAEVIKN---ME---------A 81 (630)
Q Consensus 25 ~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAY--------RiK~qLAdL---h~ae~skN---~e---------~ 81 (630)
+-.+|-.|+.|+++=|+ +-|||-+|. |+=.|-||| |-.=+++- +| +
T Consensus 1077 ~r~l~Ekl~~EL~~eK~-----------c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaa 1145 (1320)
T PLN03188 1077 SRALAEKQKHELDTEKR-----------CAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAA 1145 (1320)
T ss_pred HHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888887776 457787775 777788877 22111111 11 1
Q ss_pred HHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHH----------------HHHHHHHHHHHHHHHHHHH-HHHHhhHHH
Q 006796 82 EKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELM----------------SQKFNEFQTRLEELSSENI-ELKKQNATL 144 (630)
Q Consensus 82 EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m----------------~qkf~~f~~R~eE~~s~~~-~qk~~n~aL 144 (630)
---||=--+..|.|+|- .-|.+-+||.||++-.+ .|.--++.=|++|++...- .||+.+++
T Consensus 1146 kag~kg~~~~f~~alaa-e~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~- 1223 (1320)
T PLN03188 1146 RAGVRGAESKFINALAA-EISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDA- 1223 (1320)
T ss_pred HhccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 11122222333444442 35667888888876432 2334467778888876543 45555554
Q ss_pred hhhHHHHHHhhHhHHH
Q 006796 145 RFDLEKQEELNESFKE 160 (630)
Q Consensus 145 Q~dl~~~~eq~e~~~k 160 (630)
+-+-++++.|.+.+++
T Consensus 1224 eqe~~~~~k~~~klkr 1239 (1320)
T PLN03188 1224 EQEAAEAYKQIDKLKR 1239 (1320)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3355566666665544
No 169
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=23.13 E-value=1.1e+02 Score=25.01 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 006796 206 ISALEDELEKTRSSVENLQSKLRM 229 (630)
Q Consensus 206 isALEeEle~lr~si~~LQskLR~ 229 (630)
|+||.++++.|..++..||+.+..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888887653
No 170
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.07 E-value=5.2e+02 Score=25.46 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=32.8
Q ss_pred hccccccccccccccccccccccCcc---hHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006796 176 LETSWEDKCACLLLDSAEMWSFNDTS---TSKYISALEDELEKTRSSVENLQSKLRM 229 (630)
Q Consensus 176 ~~~s~~~Kcs~LL~Ds~~~WSfn~tS---tskyisALEeEle~lr~si~~LQskLR~ 229 (630)
.++==-+||+. |.--|+|.+.. ...-+..|+.+++.++++++.|+.+|-.
T Consensus 42 DglV~~EKiGs----sn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 42 DGLVHVEKIGS----SNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred cccchhhhccC----eeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444567763 55569998543 3345667777777778888777776644
No 171
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=22.83 E-value=1.3e+03 Score=27.41 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006796 202 TSKYISALEDELEKTRSSVENLQSKLRMG 230 (630)
Q Consensus 202 tskyisALEeEle~lr~si~~LQskLR~G 230 (630)
+..-|-.||.|.+.|+.++.+--+..+.|
T Consensus 247 aq~ri~~lE~e~e~L~~ql~~~N~~~~~~ 275 (629)
T KOG0963|consen 247 AQQRIVFLEREVEQLREQLAKANSSKKLA 275 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 56788999999999999998887777776
No 172
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=22.60 E-value=2.2e+02 Score=29.34 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Q 006796 354 ASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQ 402 (630)
Q Consensus 354 ~s~aLAQALqEKveALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~Q 402 (630)
..+++ +.|..+=..|+-|+|++.++.-=.+-++..|.++++||+..-|
T Consensus 79 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (239)
T TIGR03789 79 NDEQQ-QHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQ 126 (239)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 7777777777778877777654444444444455555554444
No 173
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=22.51 E-value=1.2e+02 Score=27.35 Aligned_cols=49 Identities=31% Similarity=0.379 Sum_probs=33.2
Q ss_pred hhhhhhcccchhhhhcchhhHhhhhhhHHHHHHHHHH------HhhhhhcccchHHHHH
Q 006796 6 ILSSCVCSKLDLVTLLSPLVCISKAGLEQEIEILKQK------IAACARENSNLQEELS 58 (630)
Q Consensus 6 ~~~~~v~~~~d~~t~~~~~~~qrtA~LEQeIE~LkkK------l~~c~ReN~NLQeELs 58 (630)
-|-+++.|++--.+.+ .-.. .+|..||+.|+.| +.-+.-||+.|+||+-
T Consensus 7 rLE~~~~g~l~~~~~~---~~e~-~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~r 61 (86)
T PF12711_consen 7 RLEKLLDGKLPSESYL---EEEN-EALKEEIQLLREQVEHNPEVTRFAMENIRLREELR 61 (86)
T ss_pred HHHHHhcCCCCccchh---HHHH-HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 3566777776554444 4444 8899999999975 4556667777777763
No 174
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.14 E-value=5.4e+02 Score=24.23 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006796 202 TSKYISALEDELEKTRSSVENLQSKLR 228 (630)
Q Consensus 202 tskyisALEeEle~lr~si~~LQskLR 228 (630)
....|..|++|+..+.+++..|++.-.
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445788999999999999999887443
No 175
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.10 E-value=5.4e+02 Score=22.91 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 006796 205 YISALEDELEKTRSSVENLQSKLR 228 (630)
Q Consensus 205 yisALEeEle~lr~si~~LQskLR 228 (630)
-|.+|++..+.++.++..+|++||
T Consensus 82 ~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 82 RVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554
No 176
>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]
Probab=21.99 E-value=2.6e+02 Score=29.20 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcch
Q 006796 203 SKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRS 282 (630)
Q Consensus 203 skyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~Im~lL~ee~s 282 (630)
-+||++||.+.+.-.+. .--|+.+-+- .|| -++..+|.+=+ .-+.|++.-.+.++.-.- |-+|..+|+.
T Consensus 31 ~~~I~eLe~~~~~~~~~-~D~e~~~~~~-~~e-t~~~~~r~ifq--rR~~Kiv~~A~~~~~~~~------~~~Lt~eEk~ 99 (223)
T COG1711 31 RSFIKELEDEAGRAEEA-RDIEKYLLTD-RIE-TAKSDARSIFQ--RRYGKIVSRAIYDVPGET------ISNLTPEEKE 99 (223)
T ss_pred HHHHHHHHHHhhccccc-cCHHHHHHHH-HHH-HHHHHHHHHHH--HHHHHHHHHHHHhccccc------hhcCCHHHHH
Confidence 34899999888665544 2222222222 111 12333333222 247788888887775433 8889999999
Q ss_pred hhhhHHHHHHhhh
Q 006796 283 HIKSISDVIEEKT 295 (630)
Q Consensus 283 ~i~s~v~~ieekl 295 (630)
.+..+++.|++--
T Consensus 100 ly~~l~~~I~~e~ 112 (223)
T COG1711 100 LYEDLVNFIEDER 112 (223)
T ss_pred HHHHHHHHHhhch
Confidence 9999999997644
No 177
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.97 E-value=3.2e+02 Score=21.87 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHH
Q 006796 120 FNEFQTRLEELSSENIELKKQNATLRFDLEKQ 151 (630)
Q Consensus 120 f~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~ 151 (630)
....+..+.++++++.+++.-|+.|+.++..+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666677777777777777777777777
No 178
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.87 E-value=4.8e+02 Score=29.87 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhH
Q 006796 115 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 148 (630)
Q Consensus 115 ~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl 148 (630)
.+..++.+.++|+.++.++++.++..|..|+...
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777788888888888877777777765443
No 179
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.79 E-value=1.7e+03 Score=28.22 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=39.6
Q ss_pred hcccchhhhhcchhhHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHH
Q 006796 11 VCSKLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSE 59 (630)
Q Consensus 11 v~~~~d~~t~~~~~~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsE 59 (630)
.+-.|.+.|+=--|---|+-.|.+|.|.+|+++--...|=-=|..|..+
T Consensus 309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777778899999999999999999998888876666666654
No 180
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=21.44 E-value=7.2e+02 Score=24.11 Aligned_cols=66 Identities=24% Similarity=0.323 Sum_probs=37.3
Q ss_pred hHHHHHhhhHHHHhhhHhhhh-HHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 71 HAAEVIKNMEAEKQVKFFQGC-MAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELK 138 (630)
Q Consensus 71 h~ae~skN~e~EKQVkFFQs~-VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk 138 (630)
+.....++.++=-|--|||.+ +=+..+|=-..+.+.+... -...-+++...+++.++|.++-++.+
T Consensus 27 ~nea~~~q~~AsdqWa~YQAKsiK~~l~e~~~~~l~~~~~~--~~~~~~~i~~Y~~~~~~~~~e~~~l~ 93 (157)
T PF14235_consen 27 KNEAVIAQAEASDQWAYYQAKSIKQHLAELAADLLELELAA--RAAYQKKIARYKKEKARYKSEAEELE 93 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888999999985 3344444444445544333 33344445555555555555443333
No 181
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=21.08 E-value=1.4e+03 Score=26.82 Aligned_cols=126 Identities=23% Similarity=0.315 Sum_probs=70.9
Q ss_pred hHhhhhhhHHHHHHHHHHHhhhhhcccch----HHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhc
Q 006796 25 VCISKAGLEQEIEILKQKIAACARENSNL----QEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERD 100 (630)
Q Consensus 25 ~~qrtA~LEQeIE~LkkKl~~c~ReN~NL----QeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD 100 (630)
+-.....|+.||..|+...+ ++.-++ -.||+.|-++=..-+.=++..-.+=..++-+++=|-..+.-++-+|.
T Consensus 61 LEaqN~~L~~di~~lr~~~~---~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~ 137 (546)
T KOG0977|consen 61 LEAQNRKLEHDINLLRGVVG---RETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERR 137 (546)
T ss_pred HHHHHHHHHHHHHHHHhhcc---CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 34566778888888887544 333333 34666666654444322222222223344444444444444443332
Q ss_pred chhHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006796 101 NSVMEAEKAKEKEEL---MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 156 (630)
Q Consensus 101 ~slmEaEKaKE~Ee~---m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e 156 (630)
.. -|++.+-+-. .-.+.+.+..|++-++.+....|..|..|..++...+.+.+
T Consensus 138 ~~---re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 138 GA---REKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred hh---HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 21 1222222222 23456777788888888888888888888888888877766
No 182
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.89 E-value=2.1e+02 Score=29.55 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcc
Q 006796 202 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 281 (630)
Q Consensus 202 tskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~Im~lL~ee~ 281 (630)
.+..|+.|..++|.+.+.++.|++..+=+ ++-... +.+...+..+| +-.++|...=-.|+.+|+.+.
T Consensus 127 l~~~Id~L~~QiE~~E~E~E~L~~~~kKk----k~~~~~----~~r~~~l~~~i-----erhk~Hi~kLE~lLR~L~N~~ 193 (233)
T PF04065_consen 127 LKDSIDELNRQIEQLEAEIESLSSQKKKK----KKDSTK----QERIEELESRI-----ERHKFHIEKLELLLRLLDNDE 193 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC----ccCccc----hhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCC
Confidence 67789999999999999999999865432 111111 11111122222 124556666667888999998
Q ss_pred hhhhhHHHHHHhhhcc
Q 006796 282 SHIKSISDVIEEKTQH 297 (630)
Q Consensus 282 s~i~s~v~~ieekl~~ 297 (630)
..-.. |+.|.+-|+.
T Consensus 194 l~~e~-V~~ikediey 208 (233)
T PF04065_consen 194 LDPEQ-VEDIKEDIEY 208 (233)
T ss_pred CCHHH-HHHHHHHHHH
Confidence 76644 4457777744
No 183
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.88 E-value=1.9e+02 Score=23.00 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHh
Q 006796 31 GLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLH 71 (630)
Q Consensus 31 ~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh 71 (630)
-||+|-+.||..-.....+|..|+.|-.. +++++..|-
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~---L~aev~~L~ 39 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEK---LRAEVQELK 39 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 37899999999999999999999988764 667776663
No 184
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.72 E-value=1.2e+02 Score=25.60 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=28.4
Q ss_pred cccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 006796 186 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQ 224 (630)
Q Consensus 186 ~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQ 224 (630)
.++...-+.||+.+ ...||+.|+.|...+++.+++=+
T Consensus 12 ~~ig~dLs~lSv~E--L~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 12 HEIGEDLSLLSVEE--LEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred cccCCCchhcCHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667788874 46799999999999998877644
No 185
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.69 E-value=2.4e+02 Score=28.13 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHH
Q 006796 384 NVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 426 (630)
Q Consensus 384 ~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e 426 (630)
+-|+.|+..+++||..+-+...|.-+..-++..++++|..|-.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777777777777666666666677778888887763
No 186
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=20.65 E-value=8.6e+02 Score=24.31 Aligned_cols=42 Identities=26% Similarity=0.319 Sum_probs=30.4
Q ss_pred HHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhh
Q 006796 238 KKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEE 279 (630)
Q Consensus 238 kk~vr~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~Im~lL~e 279 (630)
.+.+..|+++.-+..+.+..-+..-..-|...+..+-.+..+
T Consensus 138 ~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~e 179 (194)
T PF15619_consen 138 EKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEE 179 (194)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777778888888888888888887777655443
No 187
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=20.40 E-value=8.2e+02 Score=26.65 Aligned_cols=30 Identities=27% Similarity=0.301 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 006796 110 KEKEELMSQKFNEF----QTRLEELSSENIELKK 139 (630)
Q Consensus 110 KE~Ee~m~qkf~~f----~~R~eE~~s~~~~qk~ 139 (630)
.+.|..+..||-.+ -.+|++++..+...+.
T Consensus 175 ~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 175 EEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 36677888887544 4456666555544443
No 188
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=20.36 E-value=1.7e+02 Score=32.15 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 112 KEELMSQKFNEFQTRLEELSSENIELK 138 (630)
Q Consensus 112 ~Ee~m~qkf~~f~~R~eE~~s~~~~qk 138 (630)
=..--+|.|.|..+||.+....|+||-
T Consensus 67 F~rqTsQRF~EYdERM~~kRqKcKeqC 93 (353)
T TIGR01477 67 FDRQTSQRFEEYDERMQEKRQKCKEQC 93 (353)
T ss_pred HhHHHHHHHHhHHHHHHHhhhhhHHhh
Confidence 345568889999999999988888764
No 189
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=20.23 E-value=3.6e+02 Score=24.38 Aligned_cols=57 Identities=28% Similarity=0.303 Sum_probs=44.2
Q ss_pred HHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHH
Q 006796 367 AALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 426 (630)
Q Consensus 367 eALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e 426 (630)
++++-=++--+-|+++.+ ..|...|+-||..+-+ ..+=.+.-||--+|+++..+|+.
T Consensus 9 E~~~~g~l~~~~~~~~e~--~~L~eEI~~Lr~qve~-nPevtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 9 EKLLDGKLPSESYLEEEN--EALKEEIQLLREQVEH-NPEVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred HHHhcCCCCccchhHHHH--HHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433344456777766 7888899999999988 77777899999999999999884
No 190
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=20.20 E-value=1.7e+03 Score=27.51 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHH------------HHHHhHHhHHHHHHhhhhhHH--HHHHHHHHHHHhhhhhH
Q 006796 205 YISALEDELEKTRSSVENLQSKLRMGLE------------IENHLKKSVRELEKKIIHSDK--FISNAIAELRLCHSQLR 270 (630)
Q Consensus 205 yisALEeEle~lr~si~~LQskLR~GLE------------IEnHLkk~vr~LeKkqi~~dk--~i~ngis~Lq~~h~~~R 270 (630)
.+.-|+++++.+.+.+..+-.+++|-.+ .--|||++.-+||++..+... -+.+-+.+++|.--.+|
T Consensus 164 r~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~ 243 (916)
T KOG0249|consen 164 RTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLR 243 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777777422 234677777777777765332 24555666666555555
Q ss_pred HHHHHhhhh
Q 006796 271 VHVVNSLEE 279 (630)
Q Consensus 271 ~~Im~lL~e 279 (630)
..|-.|..+
T Consensus 244 ~d~E~Lr~e 252 (916)
T KOG0249|consen 244 TDIEDLRGE 252 (916)
T ss_pred hhHHHHHHH
Confidence 555544433
No 191
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=20.17 E-value=3.3e+02 Score=32.13 Aligned_cols=62 Identities=21% Similarity=0.085 Sum_probs=41.1
Q ss_pred HHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhccccCCCcccccccCcchhh
Q 006796 393 IEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGRL 455 (630)
Q Consensus 393 ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e~~~~~~k~~~~~~~~~~k~~~~~er~G~l 455 (630)
=+|+++-..++..-|.+-.=||++||++.|.|++-++-+..+. +++....|+.....++|..
T Consensus 14 ~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~-r~~s~~~~r~~~~~~~~~~ 75 (654)
T PF09798_consen 14 QKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNEL-RSLSSSKRRKNVSSPSGTN 75 (654)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhccccccccccc
Confidence 3455555556666777778899999999999998666555554 4445555555444445443
No 192
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.10 E-value=5.1e+02 Score=22.55 Aligned_cols=103 Identities=19% Similarity=0.329 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHH-----------------------Hhhh
Q 006796 30 AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAE-----------------------KQVK 86 (630)
Q Consensus 30 A~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~E-----------------------KQVk 86 (630)
..|...++.|+.++..+.+....|++.++|-=..|.-|..| . ..-+
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l-----------~~~~~~~~~l~~~g~~~~~~~~i~~~~~ 70 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETL-----------KKAEEEKELLVPLGAGLFVKAEVKDDDK 70 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hccCCCCeEEEecCCceEEEEEECCCCE
Q ss_pred HhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHH
Q 006796 87 FFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 151 (630)
Q Consensus 87 FFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~ 151 (630)
+|-.-=+-.|+|++.. +-.+-.-.+...+++++++++..+.+....=..++..+...
T Consensus 71 v~v~iG~~~~ve~~~~--------eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 71 VLVDLGTGVYVEKSLE--------EAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EEEEecCCEEEEecHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!