Query 006796
Match_columns 630
No_of_seqs 17 out of 19
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 09:12:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 90.4 2.2 7.4E-05 43.8 11.9 65 106-170 525-589 (597)
2 1i84_S Smooth muscle myosin he 87.0 1.2 4E-05 51.1 8.0 40 115-154 917-956 (1184)
3 3o0z_A RHO-associated protein 85.5 26 0.00087 33.4 16.6 125 106-267 29-153 (168)
4 3vkg_A Dynein heavy chain, cyt 82.1 66 0.0023 41.7 20.6 46 230-275 2081-2130(3245)
5 2dfs_A Myosin-5A; myosin-V, in 81.5 11 0.00038 43.5 12.7 32 29-60 923-954 (1080)
6 3oja_B Anopheles plasmodium-re 78.5 60 0.0021 33.3 15.8 22 206-227 560-581 (597)
7 1i84_S Smooth muscle myosin he 77.5 4 0.00014 46.8 7.5 46 111-156 920-965 (1184)
8 3hnw_A Uncharacterized protein 75.0 13 0.00044 33.7 8.7 31 104-134 103-133 (138)
9 1fxk_A Prefoldin; archaeal pro 74.1 31 0.0011 28.3 10.1 84 115-227 5-88 (107)
10 2zqm_A Prefoldin beta subunit 74.0 37 0.0013 28.2 12.9 85 114-227 9-93 (117)
11 1nkp_A C-MYC, MYC proto-oncoge 73.8 4.7 0.00016 33.9 5.2 54 160-225 20-73 (88)
12 1deq_A Fibrinogen (alpha chain 72.7 12 0.0004 39.7 8.8 94 175-271 39-145 (390)
13 1am9_A Srebp-1A, protein (ster 70.6 5.4 0.00019 32.9 4.8 53 161-227 21-73 (82)
14 1hlo_A Protein (transcription 69.5 5.8 0.0002 32.3 4.7 52 161-225 27-78 (80)
15 1nkp_B MAX protein, MYC proto- 69.1 7.6 0.00026 31.7 5.3 53 161-226 17-69 (83)
16 1c1g_A Tropomyosin; contractIl 67.2 63 0.0021 28.1 27.4 22 206-227 218-239 (284)
17 2fxo_A Myosin heavy chain, car 66.6 68 0.0023 28.2 14.6 53 111-163 69-121 (129)
18 1m1j_B Fibrinogen beta chain; 66.6 44 0.0015 35.8 11.8 52 202-253 91-142 (464)
19 2efr_A General control protein 63.4 97 0.0033 28.9 16.8 121 32-169 26-146 (155)
20 1c1g_A Tropomyosin; contractIl 61.0 83 0.0028 27.3 27.4 13 209-221 186-198 (284)
21 4h22_A Leucine-rich repeat fli 60.5 49 0.0017 29.5 9.0 59 98-156 24-82 (103)
22 1l8d_A DNA double-strand break 59.4 23 0.00079 29.6 6.6 24 204-227 64-87 (112)
23 1nlw_A MAD protein, MAX dimeri 59.1 12 0.0004 31.1 4.7 55 161-227 16-70 (80)
24 1wt6_A Myotonin-protein kinase 58.7 53 0.0018 28.3 8.6 65 93-157 2-70 (81)
25 3ghg_A Fibrinogen alpha chain; 55.4 26 0.0009 38.5 7.8 81 213-297 66-150 (562)
26 2dfs_A Myosin-5A; myosin-V, in 53.6 75 0.0026 36.8 11.5 32 119-150 922-953 (1080)
27 3etw_A Adhesin A; antiparallel 52.3 1.3E+02 0.0044 27.2 10.5 37 28-70 10-46 (119)
28 1zme_C Proline utilization tra 51.5 14 0.00049 28.1 3.7 27 202-228 42-68 (70)
29 3mq9_A Bone marrow stromal ant 50.1 40 0.0014 33.9 7.7 61 349-413 366-432 (471)
30 3vkg_A Dynein heavy chain, cyt 49.4 2.7E+02 0.0093 36.4 16.3 95 114-209 2031-2128(3245)
31 3s4r_A Vimentin; alpha-helix, 49.0 40 0.0014 28.7 6.4 44 383-426 48-91 (93)
32 3tnu_A Keratin, type I cytoske 47.4 1.5E+02 0.005 26.1 10.1 76 119-234 39-120 (131)
33 3dyt_A Sorting nexin-9; 3-heli 46.6 2.4E+02 0.0081 28.3 13.4 89 17-105 187-287 (366)
34 3tnu_B Keratin, type II cytosk 46.2 1.5E+02 0.0052 25.9 11.4 75 120-234 38-118 (129)
35 1ic2_A Tropomyosin alpha chain 45.2 1.2E+02 0.0043 24.6 9.8 55 104-158 13-67 (81)
36 3na7_A HP0958; flagellar bioge 44.4 2.2E+02 0.0074 27.2 16.1 28 32-59 30-57 (256)
37 2wt7_A Proto-oncogene protein 43.8 68 0.0023 25.2 6.6 47 380-426 6-58 (63)
38 1t2k_D Cyclic-AMP-dependent tr 43.2 72 0.0025 24.8 6.6 47 380-426 5-57 (61)
39 2jo8_A Serine/threonine-protei 41.5 50 0.0017 26.3 5.4 39 240-278 11-49 (51)
40 2wt7_A Proto-oncogene protein 40.9 64 0.0022 25.4 6.0 38 125-162 23-60 (63)
41 2v71_A Nuclear distribution pr 40.4 2.6E+02 0.0088 26.9 18.2 90 106-228 19-112 (189)
42 3swy_A Cyclic nucleotide-gated 39.8 70 0.0024 24.8 5.9 40 208-247 2-45 (46)
43 4ati_A MITF, microphthalmia-as 39.4 13 0.00045 32.7 2.1 69 161-246 42-112 (118)
44 3t98_B Nucleoporin NUP58/NUP45 39.2 1.1E+02 0.0038 26.3 7.7 58 115-172 9-74 (93)
45 1m1j_A Fibrinogen alpha subuni 39.0 82 0.0028 34.3 8.3 93 230-330 102-200 (491)
46 2akf_A Coronin-1A; coiled coil 38.8 15 0.00051 26.8 1.9 22 206-227 1-22 (32)
47 1ci6_A Transcription factor AT 38.8 57 0.0019 25.9 5.4 37 126-162 24-60 (63)
48 3u59_A Tropomyosin beta chain; 38.7 1.7E+02 0.0057 24.7 8.7 55 104-158 16-70 (101)
49 1t2k_D Cyclic-AMP-dependent tr 38.0 67 0.0023 24.9 5.7 36 126-161 23-58 (61)
50 2pms_C Pneumococcal surface pr 37.5 89 0.003 28.6 7.2 42 115-156 10-61 (125)
51 1joc_A EEA1, early endosomal a 36.8 1E+02 0.0035 27.0 7.3 52 98-149 5-56 (125)
52 3m91_A Proteasome-associated A 35.6 1.1E+02 0.0036 24.1 6.4 42 124-165 8-49 (51)
53 1f5n_A Interferon-induced guan 35.4 1.3E+02 0.0046 32.6 9.4 54 86-139 463-522 (592)
54 1deq_A Fibrinogen (alpha chain 35.3 4.4E+02 0.015 28.1 13.4 120 30-163 63-193 (390)
55 3ol1_A Vimentin; structural ge 35.3 2.3E+02 0.0077 24.8 12.0 30 31-60 17-46 (119)
56 2fxo_A Myosin heavy chain, car 33.4 1.5E+02 0.005 26.1 7.8 49 109-157 74-122 (129)
57 2jee_A YIIU; FTSZ, septum, coi 33.4 1.1E+02 0.0039 26.1 6.7 42 387-428 23-71 (81)
58 4g1a_A AQ-C16C19 peptide; heli 32.3 19 0.00064 26.1 1.5 20 29-48 2-21 (32)
59 1m1j_B Fibrinogen beta chain; 31.6 3.8E+02 0.013 28.8 11.9 49 116-164 98-146 (464)
60 3u1c_A Tropomyosin alpha-1 cha 31.5 2.4E+02 0.0083 24.0 12.0 30 201-230 48-77 (101)
61 1lrz_A FEMA, factor essential 31.0 1.3E+02 0.0044 30.3 7.9 54 202-256 245-298 (426)
62 1j1d_B Troponin T, TNT; THIN f 30.8 96 0.0033 27.4 6.1 43 355-403 47-89 (106)
63 1ytz_T Troponin T; muscle, THI 29.7 1.2E+02 0.0042 26.7 6.6 45 353-403 45-89 (107)
64 3u1c_A Tropomyosin alpha-1 cha 29.0 2.7E+02 0.0092 23.7 9.2 55 104-158 16-70 (101)
65 1jnm_A Proto-oncogene C-JUN; B 28.0 60 0.002 25.4 3.9 37 125-161 22-58 (62)
66 3d5a_X RF1, peptide chain rele 27.9 1E+02 0.0036 32.0 6.7 188 116-332 1-207 (354)
67 2v66_B Nuclear distribution pr 27.7 3.3E+02 0.011 24.3 12.5 64 25-92 8-79 (111)
68 2v66_B Nuclear distribution pr 27.7 3.3E+02 0.011 24.3 10.0 39 234-272 51-89 (111)
69 2b5u_A Colicin E3; high resolu 27.5 76 0.0026 34.9 5.8 21 82-102 345-375 (551)
70 3cvf_A Homer-3, homer protein 27.4 2.8E+02 0.0097 23.4 8.4 50 119-171 21-70 (79)
71 3swf_A CGMP-gated cation chann 26.9 1.2E+02 0.0041 25.7 5.7 42 208-249 4-49 (74)
72 2fic_A Bridging integrator 1; 26.6 3.3E+02 0.011 25.1 9.3 24 93-116 147-170 (251)
73 3oja_A Leucine-rich immune mol 26.3 4.9E+02 0.017 26.1 11.2 32 125-156 435-466 (487)
74 3mq7_A Bone marrow stromal ant 26.3 1.6E+02 0.0054 27.0 6.7 48 380-428 61-108 (121)
75 3swk_A Vimentin; cytoskeleton, 26.2 1.3E+02 0.0046 25.1 6.0 65 35-99 1-65 (86)
76 3nmd_A CGMP dependent protein 25.7 1.8E+02 0.0062 24.4 6.6 25 141-165 42-66 (72)
77 3ssb_C IMPI alpha, inducible m 25.4 19 0.00064 27.4 0.5 14 317-330 21-34 (40)
78 1g6u_A Domain swapped dimer; d 24.7 69 0.0024 24.9 3.6 25 205-229 21-45 (48)
79 1a93_B MAX protein, coiled coi 24.3 72 0.0025 23.7 3.4 22 127-148 9-30 (34)
80 4dzn_A Coiled-coil peptide CC- 24.0 49 0.0017 24.1 2.4 19 29-47 4-22 (33)
81 2zdi_C Prefoldin subunit alpha 24.0 3.7E+02 0.013 23.7 9.4 29 199-227 93-121 (151)
82 3ghg_A Fibrinogen alpha chain; 24.0 1.8E+02 0.0063 32.1 7.9 114 175-299 36-162 (562)
83 3hnw_A Uncharacterized protein 23.9 2.3E+02 0.008 25.5 7.5 50 380-429 71-120 (138)
84 2oqq_A Transcription factor HY 23.6 1.7E+02 0.0058 22.6 5.5 25 204-228 3-27 (42)
85 2ve7_A Kinetochore protein HEC 23.5 72 0.0025 31.9 4.5 21 178-198 255-276 (315)
86 3ra3_A P1C; coiled coil domain 23.2 41 0.0014 23.8 1.9 22 206-227 2-23 (28)
87 2d1l_A Metastasis suppressor p 23.0 5.3E+02 0.018 25.5 10.4 56 214-272 141-201 (253)
88 1p9i_A Cortexillin I/GCN4 hybr 22.9 1.1E+02 0.0036 22.1 3.9 26 202-227 4-29 (31)
89 3ghg_B Fibrinogen beta chain; 22.7 3E+02 0.01 29.7 9.2 112 183-295 62-179 (461)
90 1jnm_A Proto-oncogene C-JUN; B 22.6 1.1E+02 0.0037 23.9 4.5 34 392-425 23-56 (62)
91 3ryc_E Stathmin-4; alpha-tubul 22.5 4.7E+02 0.016 24.3 10.1 63 360-423 46-114 (143)
92 2v71_A Nuclear distribution pr 22.3 5.3E+02 0.018 24.8 13.8 95 110-230 41-142 (189)
93 2er8_A Regulatory protein Leu3 22.2 43 0.0015 25.7 2.1 25 201-225 46-70 (72)
94 1f5n_A Interferon-induced guan 22.0 4E+02 0.014 29.0 10.1 56 95-151 497-557 (592)
95 3u59_A Tropomyosin beta chain; 21.6 3.6E+02 0.012 22.7 12.4 72 108-230 6-77 (101)
96 2wvr_A Geminin; DNA replicatio 21.5 3.3E+02 0.011 26.8 8.4 63 114-180 111-174 (209)
97 2qyw_A Vesicle transport throu 20.8 1.8E+02 0.006 24.8 5.8 42 97-138 45-98 (102)
98 1vcs_A Vesicle transport throu 20.7 2.2E+02 0.0074 24.2 6.3 43 97-139 34-88 (102)
99 3i00_A HIP-I, huntingtin-inter 20.6 2.2E+02 0.0075 25.4 6.5 74 98-171 12-100 (120)
100 3mud_A DNA repair protein XRCC 20.1 68 0.0023 30.7 3.3 48 13-60 112-168 (175)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.39 E-value=2.2 Score=43.84 Aligned_cols=65 Identities=9% Similarity=0.141 Sum_probs=43.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 006796 106 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ 170 (630)
Q Consensus 106 aEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~ 170 (630)
..+.++..++.-+++..+++..++++..+.++|+.-..++.+.+..+.+...+.+.+++=|+-|.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~ 589 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR 589 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 33444445555666777778888888888888888888888888888888888888888777765
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.04 E-value=1.2 Score=51.13 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHh
Q 006796 115 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 154 (630)
Q Consensus 115 ~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq 154 (630)
....+..++++++++++..+.+.+.....++.++..++.+
T Consensus 917 ~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~e 956 (1184)
T 1i84_S 917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666555555555555555444444333
No 3
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.49 E-value=26 Score=33.36 Aligned_cols=125 Identities=15% Similarity=0.207 Sum_probs=88.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccc
Q 006796 106 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCA 185 (630)
Q Consensus 106 aEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs 185 (630)
+.|.|-..-.+....+.++.-++|++..|.-.....+.|+.|++.+..+++. |-|.++.-- ++.
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q---------Er~~r~q~s-e~~------ 92 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA---------ERRDRGHDS-EMI------ 92 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HHH------
Confidence 4566777778888999999999999999999999999999999999988882 112111110 000
Q ss_pred cccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHh
Q 006796 186 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC 265 (630)
Q Consensus 186 ~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~i~ngis~Lq~~ 265 (630)
+.+.--|.+|++|++.++....+.+..- ++|+.++..|||...-+.==+.=.|-.+|+-
T Consensus 93 --------------~elq~ri~~L~~El~~~k~~~~k~~~e~-------r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 93 --------------GDLQARITSLQEEVKHLKHNLEKVEGER-------KEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1122368888888888888887776554 3689999999998876553333455666655
Q ss_pred hh
Q 006796 266 HS 267 (630)
Q Consensus 266 h~ 267 (630)
|-
T Consensus 152 ~e 153 (168)
T 3o0z_A 152 LE 153 (168)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.06 E-value=66 Score=41.67 Aligned_cols=46 Identities=13% Similarity=0.327 Sum_probs=22.9
Q ss_pred hHHHHHH-hHHhHHHHHHhh--hhhHHHHHHH-HHHHHHhhhhhHHHHHH
Q 006796 230 GLEIENH-LKKSVRELEKKI--IHSDKFISNA-IAELRLCHSQLRVHVVN 275 (630)
Q Consensus 230 GLEIEnH-Lkk~vr~LeKkq--i~~dk~i~ng-is~Lq~~h~~~R~~Im~ 275 (630)
||.-|+. -...+..|+.+. +.=|-++..| |+-+--+-.++|..+++
T Consensus 2081 gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~ 2130 (3245)
T 3vkg_A 2081 NLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMR 2130 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4555554 345555565443 2234455444 33333444567776654
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=81.48 E-value=11 Score=43.50 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=1.9
Q ss_pred hhhhHHHHHHHHHHHhhhhhcccchHHHHHHH
Q 006796 29 KAGLEQEIEILKQKIAACARENSNLQEELSEA 60 (630)
Q Consensus 29 tA~LEQeIE~LkkKl~~c~ReN~NLQeELsEA 60 (630)
...||..|+.|+.++..--.+|..|++++...
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~ 954 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL 954 (1080)
T ss_dssp ----------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999886533
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.53 E-value=60 Score=33.25 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 006796 206 ISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 206 isALEeEle~lr~si~~LQskL 227 (630)
+..|.+|+..+++++..|++++
T Consensus 560 ~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 560 QAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666654
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=77.52 E-value=4 Score=46.85 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006796 111 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 156 (630)
Q Consensus 111 E~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e 156 (630)
.+-+.+.+++.+++.++++++..+.+.......++.++..++++.+
T Consensus 920 ~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~ele 965 (1184)
T 1i84_S 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666555555544444444444444444443
No 8
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.98 E-value=13 Score=33.71 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=15.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 104 MEAEKAKEKEELMSQKFNEFQTRLEELSSEN 134 (630)
Q Consensus 104 mEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~ 134 (630)
|+.|.++..-+..-.+++.++.++.++++.+
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554444445555555555555554444
No 9
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=74.07 E-value=31 Score=28.34 Aligned_cols=84 Identities=7% Similarity=0.149 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Q 006796 115 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEM 194 (630)
Q Consensus 115 ~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~ 194 (630)
.++.+|+.++.++..+.+++...+ .++... ..|++-+ ..+..+.+|--++.+.-.-
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~-------~~~~e~-------~~~~~EL----------~~l~~d~~vy~~iG~vfv~ 60 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVE-------MQINET-------QKALEEL----------SRAADDAEVYKSSGNILIR 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHHHH----------HHSCTTCCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHHHH----------HcCCCCchHHHHHhHHHHh
Confidence 467788888888887776654332 222222 1222211 2234456677666654433
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006796 195 WSFNDTSTSKYISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 195 WSfn~tStskyisALEeEle~lr~si~~LQskL 227 (630)
.+...++..|++..+.+...|+.|..++
T Consensus 61 -----~~~~e~~~~L~~~~e~i~~~i~~le~~~ 88 (107)
T 1fxk_A 61 -----VAKDELTEELQEKLETLQLREKTIERQE 88 (107)
T ss_dssp -----ECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776666666554
No 10
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=73.99 E-value=37 Score=28.20 Aligned_cols=85 Identities=12% Similarity=0.209 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccc
Q 006796 114 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAE 193 (630)
Q Consensus 114 e~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~ 193 (630)
..++.+|+.++.++..+.+++...+ .++... ..|++-+ ..+..+.+|-.++.+--.
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~-------~~~~e~-------~~~~~eL----------~~l~~d~~vy~~iG~vfv 64 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQ-------LELTEA-------KKALDEI----------ESLPDDAVVYKTVGTLIV 64 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHHHH----------HTSCTTCCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHHHH----------HcCCCCcHhHHHhhHHHh
Confidence 4567788888888887776664333 222222 1233211 233445677777765433
Q ss_pred cccccCcchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006796 194 MWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 194 ~WSfn~tStskyisALEeEle~lr~si~~LQskL 227 (630)
- .+...++..|++..+.+...|..|..++
T Consensus 65 ~-----~~~~ea~~~L~~~~e~ie~~i~~le~~~ 93 (117)
T 2zqm_A 65 K-----TTKDKAVAELKEKIETLEVRLNALERQE 93 (117)
T ss_dssp E-----ECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-----ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 5566677777777777777777776655
No 11
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=73.81 E-value=4.7 Score=33.89 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhhhhhhhccccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 006796 160 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 225 (630)
Q Consensus 160 kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQs 225 (630)
++=+.|..+|.-.|.+.+-+-..|.++| ..+-.||..|+++...+...++.|+.
T Consensus 20 ~ln~~f~~Lr~~vP~~~~~~K~sK~~iL------------~~A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 20 ELKRSFFALRDQIPELENNEKAPKVVIL------------KKATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHTTCGGGTTCTTCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999987544556676666 34678999999999888887776654
No 12
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=72.74 E-value=12 Score=39.66 Aligned_cols=94 Identities=17% Similarity=0.294 Sum_probs=44.6
Q ss_pred hhcccccccc--ccccccccccccccCcchHHHHHHHHHHHHHHH-----------HHHHHHHhhhhhhHHHHHHhHHhH
Q 006796 175 VLETSWEDKC--ACLLLDSAEMWSFNDTSTSKYISALEDELEKTR-----------SSVENLQSKLRMGLEIENHLKKSV 241 (630)
Q Consensus 175 ~~~~s~~~Kc--s~LL~Ds~~~WSfn~tStskyisALEeEle~lr-----------~si~~LQskLR~GLEIEnHLkk~v 241 (630)
|.|-.|-.|| .|=|.+.-+-|.. ...+-|..|-++|+.+. +-.+.|..++...-..+|-...-.
T Consensus 39 C~DeDwG~kCPsGCrLqg~Ldk~er---~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s 115 (390)
T 1deq_A 39 CSDEDWNTKCPSGCRMKGLIDEVDQ---DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQIN 115 (390)
T ss_pred CchhhccCCCCccchHHHHHHHhhh---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 4556666666 3444444333331 12233444444443332 222333333333444444445555
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhHH
Q 006796 242 RELEKKIIHSDKFISNAIAELRLCHSQLRV 271 (630)
Q Consensus 242 r~LeKkqi~~dk~i~ngis~Lq~~h~~~R~ 271 (630)
..||++++++++-|.+.|..|+-.-...|+
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~ 145 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRD 145 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566666666666666666655544444333
No 13
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=70.65 E-value=5.4 Score=32.90 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhhhhhhccccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006796 161 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 161 VI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskL 227 (630)
+=+.|.++|.-.|.| -+-.+|+++| ..+-.||..|+.++..|....+.|+..+
T Consensus 21 in~~f~~L~~lvP~~--~~k~~Ka~IL------------~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 21 INDKIIELKDLVVGT--EAKLNKSAVL------------RKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHTCS--SCCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC--CCCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888877764 2344666666 3367899999999999999888887654
No 14
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=69.48 E-value=5.8 Score=32.29 Aligned_cols=52 Identities=12% Similarity=0.296 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhhhhhhccccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 006796 161 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 225 (630)
Q Consensus 161 VI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQs 225 (630)
+=..|.++|.-.|.+.+. -..|.++| ..+-.||..|+++++.|...++.|+.
T Consensus 27 in~~f~~Lr~lvP~~~~~-k~sK~~iL------------~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 27 IKDSFHSLRDSVPSLQGE-KASRAQIL------------DKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHSGGGTTS-CCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHCcCCCCC-CccHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445688999988877431 23455554 34678999999999999999988874
No 15
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=69.15 E-value=7.6 Score=31.67 Aligned_cols=53 Identities=11% Similarity=0.300 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhhhhhhccccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 006796 161 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 226 (630)
Q Consensus 161 VI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQsk 226 (630)
+=+.|.++|.-.|.|.+. -.+|.++| ..+-.||..|++++..+...++.|...
T Consensus 17 in~~f~~Lr~lvP~~~~~-k~sK~~iL------------~~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 17 IKDSFHSLRDSVPSLQGE-KASRAQIL------------DKATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHTTSGGGTTS-CCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCC-CCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788999988877432 24555555 336789999998888887777666543
No 16
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=67.24 E-value=63 Score=28.06 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 006796 206 ISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 206 isALEeEle~lr~si~~LQskL 227 (630)
+..+++++..++..++.++..+
T Consensus 218 ~~~~~~~l~~l~~~~~~~~~~~ 239 (284)
T 1c1g_A 218 EDKYEEEIKVLSDKLKEAETRA 239 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455554444444444
No 17
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=66.58 E-value=68 Score=28.21 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHH
Q 006796 111 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 163 (630)
Q Consensus 111 E~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~ 163 (630)
|+-+.+...-.+++..+.++++.+.+....|..|+..-.+++.+...+++=|+
T Consensus 69 E~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 69 ERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666777777777778888888888888887777777776666554
No 18
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=66.57 E-value=44 Score=35.82 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHH
Q 006796 202 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDK 253 (630)
Q Consensus 202 tskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk 253 (630)
.++|-..++..++.|++.++.|-+.-.-..++.++|+......|++.--+..
T Consensus 91 L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n 142 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDI 142 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhh
Confidence 6788888888888899888888887777777888887777666665433333
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=63.45 E-value=97 Score=28.89 Aligned_cols=121 Identities=17% Similarity=0.282 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhHH
Q 006796 32 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKE 111 (630)
Q Consensus 32 LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE 111 (630)
+|.+++.-..++..+..-...|++||--+-+----|--=....--+-...|.|+|+.+...- ||| -
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLK-----------EAE---~ 91 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLK-----------EAE---T 91 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHH-----------HHH---H
Confidence 67777777777766666666666666655432222211122223334445666666554321 222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHh
Q 006796 112 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIR 169 (630)
Q Consensus 112 ~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR 169 (630)
+.+..-..++.+++-+..++-.+...|.-+..++.+|..--.. +..+--|||.+-
T Consensus 92 RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~e---l~~~~~~~~~~~ 146 (155)
T 2efr_A 92 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDK---VEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccchHHHH
Confidence 2233333444455555555555555555555555555422111 112355666653
No 20
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=60.99 E-value=83 Score=27.30 Aligned_cols=13 Identities=8% Similarity=0.164 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 006796 209 LEDELEKTRSSVE 221 (630)
Q Consensus 209 LEeEle~lr~si~ 221 (630)
++.+++.+...+.
T Consensus 186 ~~~~~~~~~~~~~ 198 (284)
T 1c1g_A 186 SEGKCAELEEEIK 198 (284)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 21
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=60.48 E-value=49 Score=29.46 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=48.5
Q ss_pred hhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006796 98 ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 156 (630)
Q Consensus 98 ERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e 156 (630)
|+-+-+-+++--|-+=|.|-..|++++...+|-.+++..+|+..+.|+.++..+++|..
T Consensus 24 EKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456667777777788888899999999999999999999999999999988754
No 22
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=59.38 E-value=23 Score=29.61 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 006796 204 KYISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 204 kyisALEeEle~lr~si~~LQskL 227 (630)
..|+..+.++..+++.+..|...+
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i 87 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRK 87 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666555543
No 23
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=59.11 E-value=12 Score=31.10 Aligned_cols=55 Identities=18% Similarity=0.133 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhhhhhhccccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006796 161 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 161 VI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskL 227 (630)
+=+.|+.+|...|.+.+.+-..|.++| +..-.||..|+++...+...++.|+...
T Consensus 16 lk~~f~~Lr~~vP~~~~~~k~sk~~iL------------~kA~~yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 16 LRLSLEKLKGLVPLGPDSSRHTTLSLL------------TKAKLHIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHSSCCCSSSCCCTTHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999988876433322333333 2245799999999888877777666543
No 24
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=58.66 E-value=53 Score=28.25 Aligned_cols=65 Identities=26% Similarity=0.259 Sum_probs=39.0
Q ss_pred HHHHhhhcchhHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHh
Q 006796 93 AAAFAERDNSVMEAEKAKEKEELMSQ----KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 157 (630)
Q Consensus 93 A~AFAERD~slmEaEKaKE~Ee~m~q----kf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~ 157 (630)
|-+|++-|-++.|+--|-+.|----| ++..+..-..-.+|.+.+-+..|..|++++..++++++-
T Consensus 2 ~~~~~~~~~~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 2 AMAEAEAEVTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888877766643333 333333333345666666677888899999998888874
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.43 E-value=26 Score=38.50 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhH--HHHHHHHH-HHHHhhhhhHHHHHHhhhhcchhhhhHHH
Q 006796 213 LEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSD--KFISNAIA-ELRLCHSQLRVHVVNSLEEGRSHIKSISD 289 (630)
Q Consensus 213 le~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~d--k~i~ngis-~Lq~~h~~~R~~Im~lL~ee~s~i~s~v~ 289 (630)
++.||++++.+|.+= -+|+++.+.-...|.++|.... .-..|-++ +|++.|...+..|.+-+ .--.-|.++|.
T Consensus 66 INELKnqLEdlsKns---Kdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl-snIrvLQsnLe 141 (562)
T 3ghg_A 66 INKLKNSLFEYQKNN---KDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV-QHIQLLQKNVR 141 (562)
T ss_dssp HHHHHHHHTHHHHHH---HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 356666666664433 3677777777777776665422 12456666 88899998888888887 33445555555
Q ss_pred HHHhhh-cc
Q 006796 290 VIEEKT-QH 297 (630)
Q Consensus 290 ~ieekl-~~ 297 (630)
.+--|| ++
T Consensus 142 dq~~kIQRL 150 (562)
T 3ghg_A 142 AQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555 44
No 26
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=53.64 E-value=75 Score=36.84 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=1.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHH
Q 006796 119 KFNEFQTRLEELSSENIELKKQNATLRFDLEK 150 (630)
Q Consensus 119 kf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~ 150 (630)
.-.+++.++.|++..+.+.++.|..|+..+..
T Consensus 922 ~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~ 953 (1080)
T 2dfs_A 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953 (1080)
T ss_dssp -----------------------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777776666666666655443
No 27
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=52.32 E-value=1.3e+02 Score=27.22 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=26.3
Q ss_pred hhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHH
Q 006796 28 SKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 70 (630)
Q Consensus 28 rtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdL 70 (630)
|-.+||++++.|.+ .|++-+++|=++|=.-...||+.
T Consensus 10 ~l~~Leae~q~L~~------~E~qry~~eka~AE~A~~~La~~ 46 (119)
T 3etw_A 10 ELQALDAEYQNLAN------QEEARFNEERAQADAARQALAQN 46 (119)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999998888 56777777766666666666654
No 28
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=51.52 E-value=14 Score=28.08 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006796 202 TSKYISALEDELEKTRSSVENLQSKLR 228 (630)
Q Consensus 202 tskyisALEeEle~lr~si~~LQskLR 228 (630)
..+||..||++++.|...|..|++.|.
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999998763
No 29
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=50.12 E-value=40 Score=33.88 Aligned_cols=61 Identities=25% Similarity=0.250 Sum_probs=41.8
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhhc------hHHHHHHHH
Q 006796 349 DRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVT------TEKVKALME 413 (630)
Q Consensus 349 d~~~d~s~aLAQALqEKveALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~QVt------~EKVkaLmE 413 (630)
-|..+..+| +..+++++.++|==...+. =-+|+++.||+++.++|+|+.|+. |--|-+||+
T Consensus 366 ~G~~t~eea-l~~~~~~i~~~l~~~~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (471)
T 3mq9_A 366 SGRQTVDEA-LKDAQTRITAARDGLRAVM---EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA 432 (471)
T ss_dssp HSSSCHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHH-HHHHHHHHHHHHHhhHHHH---HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHH
Confidence 344455444 4667888888763222221 125999999999999999999964 445777775
No 30
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.36 E-value=2.7e+02 Score=36.37 Aligned_cols=95 Identities=6% Similarity=0.148 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccccccccc-
Q 006796 114 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSA- 192 (630)
Q Consensus 114 e~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~- 192 (630)
.+.-++++++++++.+|+.+..+..+-..+|+.+.+.-+...+...+.|+..=.=|.|=.+. --++...-..|..|.-
T Consensus 2031 ~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~-~~~l~~~~~~L~GD~LL 2109 (3245)
T 3vkg_A 2031 DEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ-SENFNTQMSTVVGDVVL 2109 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH-HHHHHHHHHhccHHHHH
Confidence 33445566666666666666666555566666666666666666666665433222221111 0112223334444432
Q ss_pred --ccccccCcchHHHHHHH
Q 006796 193 --EMWSFNDTSTSKYISAL 209 (630)
Q Consensus 193 --~~WSfn~tStskyisAL 209 (630)
--=+|.|+-|..|=..|
T Consensus 2110 aaafisY~G~f~~~~R~~l 2128 (3245)
T 3vkg_A 2110 ASAFLAYIGFFDQNFRTDL 2128 (3245)
T ss_dssp HHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 22466677777775544
No 31
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=48.96 E-value=40 Score=28.68 Aligned_cols=44 Identities=25% Similarity=0.399 Sum_probs=38.1
Q ss_pred HhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHH
Q 006796 383 RNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 426 (630)
Q Consensus 383 ~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e 426 (630)
++.....+..|.+|++.|..++.||.++..|+..|..+...++.
T Consensus 48 ~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 48 SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555667889999999999999999999999999999888874
No 32
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.37 E-value=1.5e+02 Score=26.07 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccc
Q 006796 119 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFN 198 (630)
Q Consensus 119 kf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn 198 (630)
.+.++..++..++..+..++.+|..|...++..+.+.+.-.
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l--------------------------------------- 79 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQL--------------------------------------- 79 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---------------------------------------
Confidence 35666666777777777777777777776666655444100
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHh------hhhhhHHHH
Q 006796 199 DTSTSKYISALEDELEKTRSSVENLQS------KLRMGLEIE 234 (630)
Q Consensus 199 ~tStskyisALEeEle~lr~si~~LQs------kLR~GLEIE 234 (630)
.....-|+.||.++..+|..+..... +++++|++|
T Consensus 80 -~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~E 120 (131)
T 3tnu_A 80 -AQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQE 120 (131)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11344688999999999987765432 344555554
No 33
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=46.57 E-value=2.4e+02 Score=28.26 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=47.9
Q ss_pred hhhhcchhhHhhhhhhHHHHHHHHHHHhhhh--------hcccchHHHHHHHHHhHHHHHHHhHHHHHhh-hHHHHhhhH
Q 006796 17 LVTLLSPLVCISKAGLEQEIEILKQKIAACA--------RENSNLQEELSEAYRIKGQLADLHAAEVIKN-MEAEKQVKF 87 (630)
Q Consensus 17 ~~t~~~~~~~qrtA~LEQeIE~LkkKl~~c~--------ReN~NLQeELsEAYRiK~qLAdLh~ae~skN-~e~EKQVkF 87 (630)
+...+.+|.-++..++..+...+=.-++... .++-.|-.=|+..=.+-..++++|+...... ..+.-.++.
T Consensus 187 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~~~i~~l~~~qa~~d~~~l~E~L~~ 266 (366)
T 3dyt_A 187 LLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHE 266 (366)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHSGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4445555555545555555555544443322 2333344433333344455556666544332 346667888
Q ss_pred hhhhH---HHHHhhhcchhHH
Q 006796 88 FQGCM---AAAFAERDNSVME 105 (630)
Q Consensus 88 FQs~V---A~AFAERD~slmE 105 (630)
|.|.+ =.+|..|..+|..
T Consensus 267 Y~~~l~avKd~l~~r~~aL~k 287 (366)
T 3dyt_A 267 YKGFLGCFPDIIGTHKGAIEK 287 (366)
T ss_dssp HHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 87765 4568888887753
No 34
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.16 E-value=1.5e+02 Score=25.86 Aligned_cols=75 Identities=23% Similarity=0.362 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccC
Q 006796 120 FNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFND 199 (630)
Q Consensus 120 f~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~ 199 (630)
+.++...+..++..+..++.+|..|...++..+.+-+.-.
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l---------------------------------------- 77 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELAL---------------------------------------- 77 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------------------------------------
Confidence 5666666777777777777777777777766655444100
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHh------hhhhhHHHH
Q 006796 200 TSTSKYISALEDELEKTRSSVENLQS------KLRMGLEIE 234 (630)
Q Consensus 200 tStskyisALEeEle~lr~si~~LQs------kLR~GLEIE 234 (630)
.....-|+.||.++..+|..+...-. +++++|++|
T Consensus 78 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~E 118 (129)
T 3tnu_B 78 KDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVE 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11334688999999999987765432 344555554
No 35
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=45.17 E-value=1.2e+02 Score=24.63 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=47.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhH
Q 006796 104 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 158 (630)
Q Consensus 104 mEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~ 158 (630)
+|.+.|.++-+..-+++.+.+.|.......+...++-+..|+.|+...+++....
T Consensus 13 ~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 13 LDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999988888888999998888877643
No 36
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=44.35 E-value=2.2e+02 Score=27.18 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHhhhhhcccchHHHHHH
Q 006796 32 LEQEIEILKQKIAACARENSNLQEELSE 59 (630)
Q Consensus 32 LEQeIE~LkkKl~~c~ReN~NLQeELsE 59 (630)
|-.+|+.|+..+++..+.=-.++.++..
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d 57 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLA 57 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444444444443
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.77 E-value=68 Score=25.24 Aligned_cols=47 Identities=28% Similarity=0.223 Sum_probs=38.5
Q ss_pred HHHHhhhHHHH------HHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHH
Q 006796 380 LLERNVNSALQ------KKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 426 (630)
Q Consensus 380 llE~~~n~~Lq------~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e 426 (630)
-+|+|..+|-. ..+.+|+....+.+.+.-..-.++++|++++..|+.
T Consensus 6 rrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 6 RRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777753 348899999999999998889999999999998874
No 38
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=43.17 E-value=72 Score=24.77 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=37.6
Q ss_pred HHHHhhhHHHH------HHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHH
Q 006796 380 LLERNVNSALQ------KKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 426 (630)
Q Consensus 380 llE~~~n~~Lq------~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e 426 (630)
.+|+|..+|.. ..+++|+......+.+.-..-.++..|+++...|+.
T Consensus 5 r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 5 FLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788777754 238888888888888888888899999999888874
No 39
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=41.55 E-value=50 Score=26.28 Aligned_cols=39 Identities=23% Similarity=0.470 Sum_probs=34.7
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhh
Q 006796 240 SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLE 278 (630)
Q Consensus 240 ~vr~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~Im~lL~ 278 (630)
.+.+|+.+.+.+|..|.--|.+|+..|...|.=|...++
T Consensus 11 s~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 11 TVEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 466788888999999999999999999999998887765
No 40
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=40.89 E-value=64 Score=25.39 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHH
Q 006796 125 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 162 (630)
Q Consensus 125 ~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI 162 (630)
.++.+++......+..|..|+.++..+.++...+..++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777788888888888888777666554
No 41
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=40.41 E-value=2.6e+02 Score=26.90 Aligned_cols=90 Identities=28% Similarity=0.313 Sum_probs=50.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccc
Q 006796 106 AEKAKEKEELMSQKFNEFQTRLEELSSENIE----LKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWE 181 (630)
Q Consensus 106 aEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~----qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~ 181 (630)
|++.+.+=+.+-..|++|++=-+||+..+.. ....+..|+.....++...+..+
T Consensus 19 ~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k---------------------- 76 (189)
T 2v71_A 19 SMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALK---------------------- 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 4555666666777777777766666555433 34445555555555555555222
Q ss_pred cccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006796 182 DKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLR 228 (630)
Q Consensus 182 ~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskLR 228 (630)
.|....- +--.+-|+.|+.|+..|+...+.|+..||
T Consensus 77 ~K~~~~~-----------~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 77 EKLEHQY-----------AQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221100 00234688888888888876665554443
No 42
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=39.76 E-value=70 Score=24.83 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh---hHHH-HHHhHHhHHHHHHh
Q 006796 208 ALEDELEKTRSSVENLQSKLRM---GLEI-ENHLKKSVRELEKK 247 (630)
Q Consensus 208 ALEeEle~lr~si~~LQskLR~---GLEI-EnHLkk~vr~LeKk 247 (630)
.|||-++.|.++++.||.++.= .++- ...||.++-.||++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999988742 1222 23488888888875
No 43
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=39.37 E-value=13 Score=32.68 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=32.6
Q ss_pred HHHHHHHHhhhhhhhhcc-ccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-hH
Q 006796 161 VINKFYEIRQQSLEVLET-SWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENH-LK 238 (630)
Q Consensus 161 VI~KFyeiR~~~~e~~~~-s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskLR~GLEIEnH-Lk 238 (630)
+=++|.++|.-.|.|.+. .--+|.++| ..+-.||..|+++...+......+ + -|+-.|. |+
T Consensus 42 In~~~~~L~~lvP~~~~~~~k~~Ka~IL------------~~aieYIk~Lq~~~~~l~~~~~~~----~-~l~~~n~~L~ 104 (118)
T 4ati_A 42 INDRIKELGTLIPKSNDPDMRWNKGTIL------------KASVDYIRKLQREQQRAKDLENRQ----K-KLEHANRHLL 104 (118)
T ss_dssp HHHHHHHHHHHSCCC----CCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHHHHHHhhccCccccCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHH
Confidence 335799999988888432 123466555 337789999999998887532221 1 1333443 67
Q ss_pred HhHHHHHH
Q 006796 239 KSVRELEK 246 (630)
Q Consensus 239 k~vr~LeK 246 (630)
.++.+||.
T Consensus 105 ~riqeLE~ 112 (118)
T 4ati_A 105 LRVQELEM 112 (118)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 77777775
No 44
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=39.15 E-value=1.1e+02 Score=26.33 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH--------HHhhhHHHHHHhhHhHHHHHHHHHHHhhhh
Q 006796 115 LMSQKFNEFQTRLEELSSENIELKKQNA--------TLRFDLEKQEELNESFKEVINKFYEIRQQS 172 (630)
Q Consensus 115 ~m~qkf~~f~~R~eE~~s~~~~qk~~n~--------aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~ 172 (630)
=+.+.+++|++|+..|.+.+++.++.=. ..|.=...+..|.++|.-+..+...|-.+.
T Consensus 9 yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V 74 (93)
T 3t98_B 9 YFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENV 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999988765411 234445677888888888888888876654
No 45
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=39.03 E-value=82 Score=34.28 Aligned_cols=93 Identities=13% Similarity=0.259 Sum_probs=49.1
Q ss_pred hHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHHHHhhhccccc-----cccc
Q 006796 230 GLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDD-----VIRG 304 (630)
Q Consensus 230 GLEIEnHLkk~vr~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~Im~lL~ee~s~i~s~v~~ieekl~~~~n-----~~~E 304 (630)
.-..+|-...-...||+++++++.-|-+.|.-|+-.-.-.|+...+|. .+=..|.-+++.|-. ..|+
T Consensus 102 ~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQ--------RLE~dI~~q~~~Cr~pC~r~~~y~ 173 (491)
T 1m1j_A 102 AQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMK--------RLEVDIDIKIRACKGSCARSFDYQ 173 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTTTTTBSSCCCCC
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcchhhhhHHhh
Confidence 344555555556688888888888777777666555444444433332 222344555555543 3355
Q ss_pred cccCCC-ccccccccccccceeeccCC
Q 006796 305 QNTGTY-QRETKLDEFECRDVHINNDA 330 (630)
Q Consensus 305 ~n~~~p-q~e~~~~e~ecrDVHvs~d~ 330 (630)
+++.-+ .-..++.-..-.|++-+.+.
T Consensus 174 VD~~~Ye~~QKqLeQv~a~dL~p~~d~ 200 (491)
T 1m1j_A 174 VDKEGYDNIQKHLTQASSIDMHPDFQT 200 (491)
T ss_dssp CCTTTTHHHHHHHHHHTTCCCCCSCCC
T ss_pred hcHHHHHHHHHHHHHhhccccCCccch
Confidence 553333 22334444455555544443
No 46
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=38.84 E-value=15 Score=26.79 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 006796 206 ISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 206 isALEeEle~lr~si~~LQskL 227 (630)
|+.|||++..|.+-+.+||.++
T Consensus 1 isrlee~~r~l~~ivq~lq~r~ 22 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERL 22 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 4679999999988888887654
No 47
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=38.75 E-value=57 Score=25.88 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHH
Q 006796 126 RLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 162 (630)
Q Consensus 126 R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI 162 (630)
++.+++....+.+..|+.|...+..++.++..++.+|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666666666666666666666554
No 48
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=38.67 E-value=1.7e+02 Score=24.73 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=37.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhH
Q 006796 104 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 158 (630)
Q Consensus 104 mEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~ 158 (630)
+|++.|.++-+..-+++...+.|.......+...++-+..|+.++....++...+
T Consensus 16 ~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 16 LDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666777777777777777777777777776666667777777666665533
No 49
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.02 E-value=67 Score=24.93 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHH
Q 006796 126 RLEELSSENIELKKQNATLRFDLEKQEELNESFKEV 161 (630)
Q Consensus 126 R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kV 161 (630)
++.+++......+..|..|+.++..+.+++..++.+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556677777777777776655543
No 50
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=37.51 E-value=89 Score=28.59 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH----------HhhhHHHHHHhhH
Q 006796 115 LMSQKFNEFQTRLEELSSENIELKKQNAT----------LRFDLEKQEELNE 156 (630)
Q Consensus 115 ~m~qkf~~f~~R~eE~~s~~~~qk~~n~a----------LQ~dl~~~~eq~e 156 (630)
..-+++++.+..+.+|++...++++.+.. +|.+|..-++..+
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe 61 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLS 61 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45678999999999999988888876653 6777776666655
No 51
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=36.84 E-value=1e+02 Score=27.04 Aligned_cols=52 Identities=23% Similarity=0.306 Sum_probs=29.8
Q ss_pred hhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHH
Q 006796 98 ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 149 (630)
Q Consensus 98 ERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~ 149 (630)
|||..+=.|=+++.--+..-.+..++..++.+.++.+.+..+.|..||++..
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~ 56 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHT 56 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 4554444444443333444555666666777666666666666766766543
No 52
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=35.59 E-value=1.1e+02 Score=24.12 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHH
Q 006796 124 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKF 165 (630)
Q Consensus 124 ~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KF 165 (630)
+.|+++++.++...-..|.+|-.-|..-.++...++..|+++
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888889999999999999999888888875
No 53
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=35.38 E-value=1.3e+02 Score=32.63 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=37.8
Q ss_pred hHhhh--hHHHHHhhhcchhHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 006796 86 KFFQG--CMAAAFAERDNSVMEAEKAKEKEEL----MSQKFNEFQTRLEELSSENIELKK 139 (630)
Q Consensus 86 kFFQs--~VA~AFAERD~slmEaEKaKE~Ee~----m~qkf~~f~~R~eE~~s~~~~qk~ 139 (630)
.|+++ .++.+|---|.+|.+.||+.+.|.+ +-++-..++++.++++..|..|++
T Consensus 463 ~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~ 522 (592)
T 1f5n_A 463 TYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKER 522 (592)
T ss_dssp HHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555 4577888899999999987765544 556666667776777766766654
No 54
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=35.34 E-value=4.4e+02 Score=28.08 Aligned_cols=120 Identities=8% Similarity=0.181 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHh-----------hhHHHHhhhHhhhhHHHHHhh
Q 006796 30 AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIK-----------NMEAEKQVKFFQGCMAAAFAE 98 (630)
Q Consensus 30 A~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~sk-----------N~e~EKQVkFFQs~VA~AFAE 98 (630)
-.+...|+.|++.|.-..|-| .+.|..=..+-++.+.-+.+ +.++|+++.|.|-.|-.-|.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~-------~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~- 134 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNS-------KDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ- 134 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 566777888887766544333 34444444444443322211 23667777776666665555
Q ss_pred hcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHH
Q 006796 99 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 163 (630)
Q Consensus 99 RD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~ 163 (630)
+-.+++ -.=+...-+++.++.-++--..-|.--=....+++.||..+++|..-+..||.
T Consensus 135 -~ir~Lq-----~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv~a 193 (390)
T 1deq_A 135 -RINLLQ-----KNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIA 193 (390)
T ss_pred -HHHHHH-----HHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHhhhh
Confidence 222222 11111222233333333211122222223445566666666666665555554
No 55
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=35.30 E-value=2.3e+02 Score=24.76 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHhhhhhcccchHHHHHHH
Q 006796 31 GLEQEIEILKQKIAACARENSNLQEELSEA 60 (630)
Q Consensus 31 ~LEQeIE~LkkKl~~c~ReN~NLQeELsEA 60 (630)
..|.+|+.|++++-..+.||-.|+-|+.-+
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~ 46 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNL 46 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999888776543
No 56
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=33.43 E-value=1.5e+02 Score=26.07 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHh
Q 006796 109 AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 157 (630)
Q Consensus 109 aKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~ 157 (630)
-..+.-.+..++++++.|+++....+.+.-.-...|+.+...++.+.+-
T Consensus 74 L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 74 LIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788999999999999999999999999999999999988764
No 57
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.40 E-value=1.1e+02 Score=26.06 Aligned_cols=42 Identities=31% Similarity=0.305 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhhhhchHHHHH-------HHHHHhHHHHHHHHHHHH
Q 006796 387 SALQKKIEELQRNLFQVTTEKVKA-------LMELAQLKQDYQLLQEKI 428 (630)
Q Consensus 387 ~~Lq~~ieeLQrNl~QVt~EKVka-------LmELAqLkq~y~lL~e~~ 428 (630)
+.||-.|+||...-.+.+.+.=-+ -=|.+||++++..-+++.
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555444433332222 225566666666666554
No 58
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=32.27 E-value=19 Score=26.09 Aligned_cols=20 Identities=55% Similarity=0.722 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHhhhhh
Q 006796 29 KAGLEQEIEILKQKIAACAR 48 (630)
Q Consensus 29 tA~LEQeIE~LkkKl~~c~R 48 (630)
.|+|||.|-.|..|-++|-.
T Consensus 2 iaaleqkiaaleqkcaaceq 21 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQ 21 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 37899999999999998853
No 59
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.64 E-value=3.8e+02 Score=28.77 Aligned_cols=49 Identities=8% Similarity=0.202 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHH
Q 006796 116 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK 164 (630)
Q Consensus 116 m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~K 164 (630)
+-..+++++.++.++.-.-...+++-..||..+.....|......+|++
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~ 146 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSE 146 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 4444555555665554444455556666777777666665544444443
No 60
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=31.54 E-value=2.4e+02 Score=23.97 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006796 201 STSKYISALEDELEKTRSSVENLQSKLRMG 230 (630)
Q Consensus 201 StskyisALEeEle~lr~si~~LQskLR~G 230 (630)
|.++=|.-||+++|.+...+...+.+|.-+
T Consensus 48 sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 48 QLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777776666666666666554
No 61
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=30.96 E-value=1.3e+02 Score=30.33 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHH
Q 006796 202 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFIS 256 (630)
Q Consensus 202 tskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~i~ 256 (630)
..+|++.|+++++.+.+.+++++.++.-.-.- .=.+++.+.++++....++-+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~~~ 298 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIEKRPEN-KKAHNKRDNLQQQLDANEQKIE 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCccc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999887321100 0134556666666665555444
No 62
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=30.79 E-value=96 Score=27.37 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q 006796 355 SETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQV 403 (630)
Q Consensus 355 s~aLAQALqEKveALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~QV 403 (630)
=..+|+-||+++..| ++|||=||..+..- ...|.+|...+.++
T Consensus 47 L~e~~keLh~~I~~L-----EeEKYDlE~kv~kq-~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 47 LREKAKELWQTIYNL-----EAEKFDLQEKFKQQ-KYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHH-----HHhhhhHHHHHHhh-hHHHHHHHHHHHHh
Confidence 345666666666554 67777777666654 22366665555553
No 63
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=29.73 E-value=1.2e+02 Score=26.68 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=33.4
Q ss_pred CchHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q 006796 353 EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQV 403 (630)
Q Consensus 353 d~s~aLAQALqEKveALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~QV 403 (630)
+.=..+|+-||+++..| ++|||=||..+..-- ..|.+|...+.++
T Consensus 45 ~~L~e~~keLh~~I~~l-----EeEKYDlE~kv~kq~-yEI~eL~~rV~dl 89 (107)
T 1ytz_T 45 DKLRDKAKELWDWLYQL-----QTEKYDFAEQIKRKK-YEIVTLRNRIDQA 89 (107)
T ss_dssp SHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHhhh-hHHHHHHHHHHHh
Confidence 45678899999998775 899999998887762 3477776665553
No 64
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=29.04 E-value=2.7e+02 Score=23.70 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=34.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhH
Q 006796 104 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 158 (630)
Q Consensus 104 mEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~ 158 (630)
+|++.|.++-+..-+++...+.|.......+....+-+..|..|+....++....
T Consensus 16 ~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 16 LDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666667777777777666666665555556666666665555533
No 65
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.03 E-value=60 Score=25.37 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHH
Q 006796 125 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEV 161 (630)
Q Consensus 125 ~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kV 161 (630)
.++.+++.........|..|+.++..+.+++..++.+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666667777777777777777655443
No 66
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=27.92 E-value=1e+02 Score=32.02 Aligned_cols=188 Identities=14% Similarity=0.114 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccccc
Q 006796 116 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMW 195 (630)
Q Consensus 116 m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~W 195 (630)
|..++..+.+|.+|++..+.+-.=.+| +.....+....-.+..+++.|-+++...-+..++. -|+.|+
T Consensus 1 ~~~~l~~~~~r~~el~~~~~~p~~~~d--~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~------el~~D~---- 68 (354)
T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKD--KGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAE------SLLDDP---- 68 (354)
T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TSTTCH----
T ss_pred CchHHHHHHHHHHHHHHHhcCCchhhC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhcCH----
Confidence 456777888888888776643221111 11112222222234466666666665443321110 011122
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhh-----------hHHHHHHHHHHHHH
Q 006796 196 SFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIH-----------SDKFISNAIAELRL 264 (630)
Q Consensus 196 Sfn~tStskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~-----------~dk~i~ngis~Lq~ 264 (630)
...+-.++|+..+...++.|..+|+.-|.--.-- -.+.++ ...|... |...-.
T Consensus 69 --------e~~~~a~~e~~~l~~~~~~le~~l~~lLlp~~~~-------D~~n~ileI~aGaGG~Ea~~fa~~-L~rMY~ 132 (354)
T 3d5a_X 69 --------ELKEMAKAEREALLARKEALEKELERHLLPKDPM-------DERDAIVEIRAGTGGEEAALFARD-LFNMYL 132 (354)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC-------CCCCEEEEEEECSSHHHHHHHHHH-HHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-------cccceEEEEEcCCCcHHHHHHHHH-HHHHHH
Confidence 1456678899999999999988877532000000 000000 0111111 111111
Q ss_pred hhhh---hHHHHHHhhhhcchhhhhHHHHHHh-----hhccccccccccccCCCccccccccccccceeeccCCCC
Q 006796 265 CHSQ---LRVHVVNSLEEGRSHIKSISDVIEE-----KTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADT 332 (630)
Q Consensus 265 ~h~~---~R~~Im~lL~ee~s~i~s~v~~iee-----kl~~~~n~~~E~n~~~pq~e~~~~e~ecrDVHvs~d~~p 332 (630)
.+.. .+.+|++...-+.--+|+++-.|+- .|++-.-+||=++ .||-.-.-.--.+...|.|.|..+.
T Consensus 133 r~ae~~g~k~ev~~~~~~~~gG~k~v~~~i~G~~ayg~Lk~E~GvHRvqR-vp~~es~gR~hTS~asV~V~P~~~~ 207 (354)
T 3d5a_X 133 RFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHRVQR-VPVTETQGRIHTSTATVAVLPKAEE 207 (354)
T ss_dssp HHHHHHTCEEEEEEEEECTTSSEEEEEEEEESTTHHHHHGGGCSEEEEEE-CCSSCSSCCCEEEEEEEEEEECCCC
T ss_pred HHHHHcCCeEEEEeCCCCCCCccEEEEEEEECccHHHHHHhccCeeEEEe-cCCcCCCCcCccCceEEEEeccCcc
Confidence 1111 2344555554444457777665543 3455457777777 5554333333445667788777654
No 67
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.73 E-value=3.3e+02 Score=24.29 Aligned_cols=64 Identities=27% Similarity=0.298 Sum_probs=44.6
Q ss_pred hHhhhhhhHHHHHHHHHHHhhhhhc----ccchHHHHHHHHHhHHHHH----HHhHHHHHhhhHHHHhhhHhhhhH
Q 006796 25 VCISKAGLEQEIEILKQKIAACARE----NSNLQEELSEAYRIKGQLA----DLHAAEVIKNMEAEKQVKFFQGCM 92 (630)
Q Consensus 25 ~~qrtA~LEQeIE~LkkKl~~c~Re----N~NLQeELsEAYRiK~qLA----dLh~ae~skN~e~EKQVkFFQs~V 92 (630)
+-...+.|..|++.+|.|+...-++ ...||.|+...--.+..|. ||- -+|-++|.+-|---+++
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLE----q~NDDLER~~R~t~~SL 79 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE----QANDDLERAKRATIVSL 79 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHhhH
Confidence 3456788999999999999998876 4459999988655554443 442 35777777666544433
No 68
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.69 E-value=3.3e+02 Score=24.29 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=24.9
Q ss_pred HHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHH
Q 006796 234 ENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVH 272 (630)
Q Consensus 234 EnHLkk~vr~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~ 272 (630)
-..|++++|.||.+.--+..--|+..+.|.-+.+.+=.-
T Consensus 51 ~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 51 KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344677788888877666666666666666665554333
No 69
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=27.51 E-value=76 Score=34.91 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.6
Q ss_pred HHhhhHhhh----------hHHHHHhhhcch
Q 006796 82 EKQVKFFQG----------CMAAAFAERDNS 102 (630)
Q Consensus 82 EKQVkFFQs----------~VA~AFAERD~s 102 (630)
-|-|+|||| .||.|.|++|+-
T Consensus 345 ~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f 375 (551)
T 2b5u_A 345 AKAVQVYNSRKSELDAANKTLADAIAEIKQF 375 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhhhhHHHHHHHhhhhh
Confidence 467899999 899999988864
No 70
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=27.36 E-value=2.8e+02 Score=23.45 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhh
Q 006796 119 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQ 171 (630)
Q Consensus 119 kf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~ 171 (630)
+=.+++.|++.++..+.+-+.--..++.++..+.++.+ .=|...-++|+.
T Consensus 21 rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld---~KI~eL~elRqg 70 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD---VSLFELSELREG 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHH
Confidence 34556777777777777666666777777777777766 556666667763
No 71
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=26.91 E-value=1.2e+02 Score=25.68 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh---hHHH-HHHhHHhHHHHHHhhh
Q 006796 208 ALEDELEKTRSSVENLQSKLRM---GLEI-ENHLKKSVRELEKKII 249 (630)
Q Consensus 208 ALEeEle~lr~si~~LQskLR~---GLEI-EnHLkk~vr~LeKkqi 249 (630)
.||+-++.|.++++.||.++.= .++- .+.||.|+-.||++-.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4889999999999999988642 1222 2337888888887543
No 72
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=26.56 E-value=3.3e+02 Score=25.14 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=16.7
Q ss_pred HHHHhhhcchhHHHHHhHHHHHHH
Q 006796 93 AAAFAERDNSVMEAEKAKEKEELM 116 (630)
Q Consensus 93 A~AFAERD~slmEaEKaKE~Ee~m 116 (630)
-.+...||+.++..+.++.+-+.+
T Consensus 147 ~~~ikKR~~k~lDyD~~~~~l~kl 170 (251)
T 2fic_A 147 KSRIAKRGRKLVDYDSARHHYESL 170 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456777888888887777665444
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.33 E-value=4.9e+02 Score=26.15 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006796 125 TRLEELSSENIELKKQNATLRFDLEKQEELNE 156 (630)
Q Consensus 125 ~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e 156 (630)
.-++..+..+..+++-|..++.++.++..+++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 33444455555556666666666666665555
No 74
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.33 E-value=1.6e+02 Score=27.00 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=34.3
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHHH
Q 006796 380 LLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKI 428 (630)
Q Consensus 380 llE~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e~~ 428 (630)
-|++.+-++ |++++|||-.|-..+-.=-++.+|+-+|+-+.+-|.-++
T Consensus 61 SL~~ekaq~-q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 61 SLDAEKAQG-QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 355555555 666788877777654444568999999999998887655
No 75
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=26.19 E-value=1.3e+02 Score=25.11 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhh
Q 006796 35 EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAER 99 (630)
Q Consensus 35 eIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAER 99 (630)
||+.|+.++-..+.+|..|+-|+--+--.=..+-.=|..|+.....+|..+.=+..-|=.|+--|
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r 65 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR 65 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
No 76
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.70 E-value=1.8e+02 Score=24.41 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=12.4
Q ss_pred hHHHhhhHHHHHHhhHhHHHHHHHH
Q 006796 141 NATLRFDLEKQEELNESFKEVINKF 165 (630)
Q Consensus 141 n~aLQ~dl~~~~eq~e~~~kVI~KF 165 (630)
-..|+..|....+....+...++||
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444455555556665
No 77
>3ssb_C IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=25.37 E-value=19 Score=27.40 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=12.4
Q ss_pred ccccccceeeccCC
Q 006796 317 DEFECRDVHINNDA 330 (630)
Q Consensus 317 ~e~ecrDVHvs~d~ 330 (630)
|+++|+|+|+-+..
T Consensus 21 c~n~c~~~~~qn~t 34 (40)
T 3ssb_C 21 CDNVCADLHIQNKT 34 (40)
T ss_dssp CCCBGGGTTTCCSS
T ss_pred Hhhhhhhhhccccc
Confidence 89999999998764
No 78
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.70 E-value=69 Score=24.86 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 006796 205 YISALEDELEKTRSSVENLQSKLRM 229 (630)
Q Consensus 205 yisALEeEle~lr~si~~LQskLR~ 229 (630)
-++|||-|+..|..+++-|.+||..
T Consensus 21 elaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999988888764
No 79
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=24.29 E-value=72 Score=23.66 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhHHHhhhH
Q 006796 127 LEELSSENIELKKQNATLRFDL 148 (630)
Q Consensus 127 ~eE~~s~~~~qk~~n~aLQ~dl 148 (630)
.-..+.+++++|++|..|....
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHH
Confidence 3456778888888888876654
No 80
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=24.04 E-value=49 Score=24.11 Aligned_cols=19 Identities=53% Similarity=0.567 Sum_probs=15.2
Q ss_pred hhhhHHHHHHHHHHHhhhh
Q 006796 29 KAGLEQEIEILKQKIAACA 47 (630)
Q Consensus 29 tA~LEQeIE~LkkKl~~c~ 47 (630)
.|+|.|||-.|||.+++.-
T Consensus 4 iaalkqeiaalkkeiaalk 22 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4789999999999777653
No 81
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=24.00 E-value=3.7e+02 Score=23.66 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=19.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006796 199 DTSTSKYISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 199 ~tStskyisALEeEle~lr~si~~LQskL 227 (630)
..+....++-|+..++.+...+++|+..+
T Consensus 93 E~~~~eA~~~l~~ri~~l~~~l~~l~~~l 121 (151)
T 2zdi_C 93 ERSIDEAISFLEKRLKEYDEAIKKTQGAL 121 (151)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777666554
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.98 E-value=1.8e+02 Score=32.14 Aligned_cols=114 Identities=16% Similarity=0.318 Sum_probs=73.4
Q ss_pred hhcccccccc--ccccccccccccccCcchHHHHHHHHHHHHHHH-----------HHHHHHHhhhhhhHHHHHHhHHhH
Q 006796 175 VLETSWEDKC--ACLLLDSAEMWSFNDTSTSKYISALEDELEKTR-----------SSVENLQSKLRMGLEIENHLKKSV 241 (630)
Q Consensus 175 ~~~~s~~~Kc--s~LL~Ds~~~WSfn~tStskyisALEeEle~lr-----------~si~~LQskLR~GLEIEnHLkk~v 241 (630)
|.|-.|-.|| .|-|-..-+-+. -..-+.|..|-.+++.+. +..+.|+.++..--..+|....-.
T Consensus 36 CaDeDwGvkCPSGCrLQglLdkqE---rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S 112 (562)
T 3ghg_A 36 CSDEDWNYKCPSGCRMKGLIDEVN---QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVS 112 (562)
T ss_dssp CCSSSBTTEEECHHHHHHHHHHHH---HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTT
T ss_pred ccccccCCCCCcccchhhhHHhhc---CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 4666677777 344433333322 225567888877776553 566778888887778888777777
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHHHHhhhcccc
Q 006796 242 RELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCD 299 (630)
Q Consensus 242 r~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~Im~lL~ee~s~i~s~v~~ieekl~~~~ 299 (630)
.+||+++.+++.=|.|-|+-|+..-.-.|+.+.+|.+ +=.-|+-||+-|-
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR--------LEvDIdiqirsCK 162 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR--------LEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhcc
Confidence 7999999998888888877776665555555544433 3334556664443
No 83
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.90 E-value=2.3e+02 Score=25.54 Aligned_cols=50 Identities=14% Similarity=0.313 Sum_probs=37.9
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHHHh
Q 006796 380 LLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKIC 429 (630)
Q Consensus 380 llE~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e~~~ 429 (630)
+-.+..+..|+..++++.+.+.-.+.|=+++-|++..++++...|++...
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~ 120 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN 120 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566677779999999988888888999988888877777776543
No 84
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.64 E-value=1.7e+02 Score=22.62 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 006796 204 KYISALEDELEKTRSSVENLQSKLR 228 (630)
Q Consensus 204 kyisALEeEle~lr~si~~LQskLR 228 (630)
.|++.||.....+....+.|.+++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999998888888777776553
No 85
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=23.49 E-value=72 Score=31.90 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=4.6
Q ss_pred cccccccccccccc-ccccccc
Q 006796 178 TSWEDKCACLLLDS-AEMWSFN 198 (630)
Q Consensus 178 ~s~~~Kcs~LL~Ds-~~~WSfn 198 (630)
-.|+..|++.|+=+ ...|..-
T Consensus 255 ~d~~re~~f~l~~~~~~~Y~v~ 276 (315)
T 2ve7_A 255 KNPESPFMFSLHLNEARDYEVS 276 (315)
T ss_dssp -CCCCCC---------------
T ss_pred CCCCceEEEEEEecCCCceEEE
Confidence 45778888888766 4555554
No 86
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.18 E-value=41 Score=23.78 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 006796 206 ISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 206 isALEeEle~lr~si~~LQskL 227 (630)
|.|||=|.|.|..+|+-|.+|+
T Consensus 2 idalefendaleqkiaalkqki 23 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHH
Confidence 4677888888887777777664
No 87
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=22.97 E-value=5.3e+02 Score=25.47 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhhhh----h-HHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHH
Q 006796 214 EKTRSSVENLQSKLRM----G-LEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVH 272 (630)
Q Consensus 214 e~lr~si~~LQskLR~----G-LEIEnHLkk~vr~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~ 272 (630)
.+-.....++|-|+|- | =.+--.|.+.+..+..++..++.|+.+|+.+. ....|.+
T Consensus 141 kk~~~~~~k~qkK~rk~~~~gk~~~~~~l~~a~q~v~~~~~~le~~~~~~~r~A---L~EERrR 201 (253)
T 2d1l_A 141 KKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKA---LIEERGR 201 (253)
T ss_dssp HHHHHHHHHHHHHSSCGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3333556888988887 2 34444577777788888889999999887643 3444444
No 88
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=22.88 E-value=1.1e+02 Score=22.13 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006796 202 TSKYISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 202 tskyisALEeEle~lr~si~~LQskL 227 (630)
....+++||-|...|+++++.|-.|+
T Consensus 4 lnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688999999999999999886553
No 89
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=22.66 E-value=3e+02 Score=29.72 Aligned_cols=112 Identities=13% Similarity=0.198 Sum_probs=63.0
Q ss_pred ccccccccccccccccCc------chHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHH
Q 006796 183 KCACLLLDSAEMWSFNDT------STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFIS 256 (630)
Q Consensus 183 Kcs~LL~Ds~~~WSfn~t------StskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~i~ 256 (630)
-..|+..| .+.-+|+-| -.+||-......|..|+..|+.+-|.=.-..+.-++|+-..+.-||...-.|.++.
T Consensus 62 ~g~c~~~~-~~fG~yCPTtCglad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~ 140 (461)
T 3ghg_B 62 AGGCLHAD-PDLGVLCPTGCQLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVN 140 (461)
T ss_dssp CCCCBCSS-TTTCBCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCccccC-cccCCcCCCcchHHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHH
Confidence 34455444 356788832 37888888888888888888888887777778888887666655544332233333
Q ss_pred HHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHHHHhhh
Q 006796 257 NAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKT 295 (630)
Q Consensus 257 ngis~Lq~~h~~~R~~Im~lL~ee~s~i~s~v~~ieekl 295 (630)
.-=..|.+.|.....-+..-.+..=..|.++++.+..||
T Consensus 141 ~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i 179 (461)
T 3ghg_B 141 EYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKI 179 (461)
T ss_dssp CHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH
Confidence 333333333433333333333333333444444444444
No 90
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.63 E-value=1.1e+02 Score=23.89 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHH
Q 006796 392 KIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQ 425 (630)
Q Consensus 392 ~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~ 425 (630)
.+++|+....+.+.+.-..-.++.+|+++...|+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999888889999888999999999888776
No 91
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=22.52 E-value=4.7e+02 Score=24.33 Aligned_cols=63 Identities=29% Similarity=0.400 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhchHHHH----HHHHH--hhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHH
Q 006796 360 QALQEKVAALLLLSQQEER----HLLER--NVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQL 423 (630)
Q Consensus 360 QALqEKveALlLlSQqeER----~llE~--~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~l 423 (630)
..+|.|++|=-=--+.+|- +|-|+ ....+||+.+|+ +.|.+..|.||+..=||..+-+.++++
T Consensus 46 eEIqkKLeAAEERRks~Ea~~lk~laekrehe~EvlqKa~Ee-n~~F~k~aeEkL~~KME~~kEnReA~l 114 (143)
T 3ryc_E 46 EEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEE-NNNFIKMAKEKLAQKMESNKENREAHL 114 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5688999886222111221 22222 234567776765 777788899999999999877766654
No 92
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.28 E-value=5.3e+02 Score=24.77 Aligned_cols=95 Identities=20% Similarity=0.246 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccc
Q 006796 110 KEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLL 189 (630)
Q Consensus 110 KE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~ 189 (630)
+|-|..|-+.+...++|...+++.+...+.-.+.+...+.....+ +.+.|+++ ...-.+....
T Consensus 41 rELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e---~~~~~~~L--------q~el~~l~~~------ 103 (189)
T 2v71_A 41 RELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ---SYKQVSVL--------EDDLSQTRAI------ 103 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--------HHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--------HHHHHHHHHH------
Confidence 466666777777777777777766654444333333333222211 11223321 1100000000
Q ss_pred cccccccccCcchHHHHHHHHHHHHHHH-------HHHHHHHhhhhhh
Q 006796 190 DSAEMWSFNDTSTSKYISALEDELEKTR-------SSVENLQSKLRMG 230 (630)
Q Consensus 190 Ds~~~WSfn~tStskyisALEeEle~lr-------~si~~LQskLR~G 230 (630)
+ .+..+||-.||+.+|.+. .++.-+++++-..
T Consensus 104 --------~-~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a 142 (189)
T 2v71_A 104 --------K-EQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA 142 (189)
T ss_dssp --------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------H-HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 237889999999887765 5666666666544
No 93
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=22.25 E-value=43 Score=25.69 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Q 006796 201 STSKYISALEDELEKTRSSVENLQS 225 (630)
Q Consensus 201 StskyisALEeEle~lr~si~~LQs 225 (630)
....||+.||++++.|...|..|++
T Consensus 46 ~~~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 46 YKRARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999998887654
No 94
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.02 E-value=4e+02 Score=28.99 Aligned_cols=56 Identities=25% Similarity=0.398 Sum_probs=37.5
Q ss_pred HHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHhhhHHHH
Q 006796 95 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELK-----KQNATLRFDLEKQ 151 (630)
Q Consensus 95 AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk-----~~n~aLQ~dl~~~ 151 (630)
.-||+-..++| |+.++.|..|-++=..|++++.-++..|.+.. +++..|.+.+.++
T Consensus 497 e~~~~~~~~l~-~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~ 557 (592)
T 1f5n_A 497 ESAQASAKMLH-EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQ 557 (592)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455444444 77788888999999999999998888877644 3444444444443
No 95
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.61 E-value=3.6e+02 Score=22.65 Aligned_cols=72 Identities=22% Similarity=0.261 Sum_probs=48.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccc
Q 006796 108 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACL 187 (630)
Q Consensus 108 KaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~L 187 (630)
..|.+=.+|-....+...|++.++..+.....-+..+-.++
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei--------------------------------------- 46 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQ--------------------------------------- 46 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------------------------------------
Confidence 45566677888888888888888877765554443322211
Q ss_pred cccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006796 188 LLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMG 230 (630)
Q Consensus 188 L~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskLR~G 230 (630)
+|.++=|..||.++|.+...+...+.+|.-+
T Consensus 47 ------------~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 47 ------------QGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356667778888888888777777777654
No 96
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.54 E-value=3.3e+02 Score=26.85 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh-hcccc
Q 006796 114 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEV-LETSW 180 (630)
Q Consensus 114 e~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~-~~~s~ 180 (630)
+..+++-..+.++++.++..+...|+-|.. |..+-+|.+-+..||..+-.=...+++- .++.|
T Consensus 111 ~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~e----LkeLae~~q~la~vi~~l~~~~~~~~e~~~~~~~ 174 (209)
T 2wvr_A 111 YEALKENEKLHKEIEQKDNEIARLKKENKE----LAEVAEHVQYMAELIERLNGEPLDNFESLDNQEF 174 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCcccccCchhhhc
Confidence 345667778888999888888888888876 4567778888889999887766666654 33443
No 97
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=20.78 E-value=1.8e+02 Score=24.81 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=27.3
Q ss_pred hhhcchhHHHHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 006796 97 AERDNSVMEAEKAKEKEELMSQKF------------NEFQTRLEELSSENIELK 138 (630)
Q Consensus 97 AERD~slmEaEKaKE~Ee~m~qkf------------~~f~~R~eE~~s~~~~qk 138 (630)
-+|...|-++|..-+..+.++++. ..++.|+++|.+++...|
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk 98 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667766665555555542 467788888888886544
No 98
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.73 E-value=2.2e+02 Score=24.20 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=31.8
Q ss_pred hhhcchhHHHHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 006796 97 AERDNSVMEAEKAKEKEELMSQKF------------NEFQTRLEELSSENIELKK 139 (630)
Q Consensus 97 AERD~slmEaEKaKE~Ee~m~qkf------------~~f~~R~eE~~s~~~~qk~ 139 (630)
.+|...|-++|+.-+..+.++++. ..++.|+++|.+++...|+
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 577778888888877777777664 4677888888888865443
No 99
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.59 E-value=2.2e+02 Score=25.42 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhcchh----HHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh-------hHHHhhhHHHHHHhhHhHHHHH
Q 006796 98 ERDNSV----MEAEKAKEKEELMSQK----FNEFQTRLEELSSENIELKKQ-------NATLRFDLEKQEELNESFKEVI 162 (630)
Q Consensus 98 ERD~sl----mEaEKaKE~Ee~m~qk----f~~f~~R~eE~~s~~~~qk~~-------n~aLQ~dl~~~~eq~e~~~kVI 162 (630)
+||.-| .|.+..|-.=+.+... +.++..|+-+++.++..++.+ |..|.++++.+..+...-.++.
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q 91 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQ 91 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q ss_pred HHHHHHhhh
Q 006796 163 NKFYEIRQQ 171 (630)
Q Consensus 163 ~KFyeiR~~ 171 (630)
-++-++..+
T Consensus 92 ~~~~e~E~k 100 (120)
T 3i00_A 92 RSLSEIERK 100 (120)
T ss_dssp ---------
T ss_pred HHHHHHHHH
No 100
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.06 E-value=68 Score=30.72 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=37.5
Q ss_pred ccchhhhhcchhh---------HhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHH
Q 006796 13 SKLDLVTLLSPLV---------CISKAGLEQEIEILKQKIAACARENSNLQEELSEA 60 (630)
Q Consensus 13 ~~~d~~t~~~~~~---------~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEA 60 (630)
|++||-.+-+|-- -+..+.|+.+|..|..+|..-.-+|.++++||-..
T Consensus 112 Gs~~Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqT 168 (175)
T 3mud_A 112 GSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQT 168 (175)
T ss_dssp EEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666654 34567999999999999999999999999997543
Done!