Query 006796
Match_columns 630
No_of_seqs 17 out of 19
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 09:12:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006796.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006796hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uklc_ a.38.1.1 (C:) SREBP-2 71.5 2.8 0.00021 31.0 5.0 51 163-227 6-56 (61)
2 d1nkpa_ a.38.1.1 (A:) Myc prot 70.6 5 0.00037 31.0 6.5 55 161-227 21-75 (88)
3 d1am9a_ a.38.1.1 (A:) SREBP-1a 61.2 5 0.00036 30.7 4.7 51 163-227 23-73 (80)
4 d1nlwa_ a.38.1.1 (A:) Mad prot 58.6 5.9 0.00043 30.0 4.7 52 163-226 18-69 (79)
5 d1nkpb_ a.38.1.1 (B:) Max prot 47.2 15 0.0011 27.9 5.3 52 161-225 17-68 (83)
6 d1vcsa1 a.47.2.1 (A:8-96) Vesi 33.6 78 0.0057 24.7 7.8 43 97-139 27-81 (89)
7 d1lrza1 a.2.7.4 (A:245-309) Me 16.2 62 0.0045 24.5 3.7 27 203-229 2-28 (65)
8 d2jn6a1 a.4.1.19 (A:1-89) Unch 13.6 23 0.0017 26.9 0.5 46 460-511 36-81 (89)
9 d1xwma_ a.7.12.1 (A:) Phosphat 12.5 2.7E+02 0.019 22.6 7.2 64 209-279 2-66 (212)
10 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 12.1 83 0.0061 24.3 3.4 23 205-227 27-49 (67)
No 1
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.51 E-value=2.8 Score=30.97 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=37.7
Q ss_pred HHHHHHhhhhhhhhccccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006796 163 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 163 ~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskL 227 (630)
++|-.+|.-.|.|. +-.+|+++| +.+-.||..|+.+...|......|+...
T Consensus 6 ~~f~~L~~lvP~~~--~K~~Ka~iL------------~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 6 DKIIELKDLVMGTD--AKMHKSGVL------------RKAIDYIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHSCSS--CCCCTTTHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCC--CcccHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888777552 233566666 3467899999999999998888877643
No 2
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.59 E-value=5 Score=31.00 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=39.4
Q ss_pred HHHHHHHHhhhhhhhhccccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006796 161 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 161 VI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskL 227 (630)
+=+.|.++|.-.|.+.+-.--.|.++| ..+.+||..|+++++.+...++.|+.+.
T Consensus 21 in~~f~~Lr~llP~~~~~~k~sK~~iL------------~~A~~yI~~L~~~~~~l~~~~~~l~~~~ 75 (88)
T d1nkpa_ 21 LKRSFFALRDQIPELENNEKAPKVVIL------------KKATAYILSVQAEEQKLISEEDLLRKRR 75 (88)
T ss_dssp HHHHHHHHHTTCGGGTTCTTCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCccCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335788899888776443334466666 3478899999999998888777776544
No 3
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.24 E-value=5 Score=30.74 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=36.1
Q ss_pred HHHHHHhhhhhhhhccccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006796 163 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 163 ~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskL 227 (630)
+.|.++|.-.|.| ..-.+|+++| ..+-.||..|+++++.|......|+..+
T Consensus 23 ~~~~~L~~llP~~--~~k~~K~~iL------------~~a~~yI~~L~~~~~~L~~e~~~lk~~~ 73 (80)
T d1am9a_ 23 DKIIELKDLVVGT--EAKLNKSAVL------------RKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (80)
T ss_dssp HHHHHHHHHHTCS--SCCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC--CCCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577787765544 1223566666 3477899999999999998888876554
No 4
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.63 E-value=5.9 Score=30.04 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=37.4
Q ss_pred HHHHHHhhhhhhhhccccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 006796 163 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 226 (630)
Q Consensus 163 ~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQsk 226 (630)
..|.++|.-.|.+.+..=..|.++| ..+-.||..|++++..+...++.|+.+
T Consensus 18 ~~f~~L~~llP~~~~~~k~sK~~iL------------~~A~~yI~~L~~~~~~l~~~~~~L~~~ 69 (79)
T d1nlwa_ 18 LSLEKLKGLVPLGPDSSRHTTLSLL------------TKAKLHIKKLEDSDRKAVHQIDQLQRE 69 (79)
T ss_dssp HHHHHHHHSSCCCSSSCCCTTHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCCCCCCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888877766444434566666 346789999999998888877777654
No 5
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.23 E-value=15 Score=27.91 Aligned_cols=52 Identities=12% Similarity=0.319 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhhhhhhccccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 006796 161 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 225 (630)
Q Consensus 161 VI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQs 225 (630)
+=+.|.++|.--|.+.+.. -+|.++| ..+..||..|++++..+...+..|+.
T Consensus 17 in~~f~~L~~llP~~~~~k-~sK~~iL------------~~A~~yI~~L~~~~~~l~~~~~~l~~ 68 (83)
T d1nkpb_ 17 IKDSFHSLRDSVPSLQGEK-ASRAQIL------------DKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHTTSGGGTTSC-CCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCC-CCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788888777663322 2566666 34778999988888777766665544
No 6
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.59 E-value=78 Score=24.69 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=35.3
Q ss_pred hhhcchhHHHHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 006796 97 AERDNSVMEAEKAKEKEELMSQKF------------NEFQTRLEELSSENIELKK 139 (630)
Q Consensus 97 AERD~slmEaEKaKE~Ee~m~qkf------------~~f~~R~eE~~s~~~~qk~ 139 (630)
.+|...|-++|+.-+..+.++.+. +.++.|++.|.+++...|+
T Consensus 27 eerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~ 81 (89)
T d1vcsa1 27 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 81 (89)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999888888888776 4788999999998876653
No 7
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=16.22 E-value=62 Score=24.51 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006796 203 SKYISALEDELEKTRSSVENLQSKLRM 229 (630)
Q Consensus 203 skyisALEeEle~lr~si~~LQskLR~ 229 (630)
..||..|+.+.+.|.++|+++...|.-
T Consensus 2 ~eYl~~L~~~~~~L~~~i~k~~~~lek 28 (65)
T d1lrza1 2 DEYIKELNEERDILNKDLNKALKDIEK 28 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999887765
No 8
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=13.57 E-value=23 Score=26.90 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=26.4
Q ss_pred hhhhHhhhhccCCCCCCCCccCcccccCccccccCccchhhhhhchhhHHHH
Q 006796 460 KKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKES 511 (630)
Q Consensus 460 krtyLr~Wi~~~d~sG~~~~s~~~~~~~~~~~~~~s~D~ARmKvENAtLkEs 511 (630)
..+.|++|++.-..-|...... .....+..-.+++++-||+-|+.-
T Consensus 36 s~~tl~~W~k~~~~~~~~~~~~------~~~~~~~~~ei~~L~~En~~Lk~~ 81 (89)
T d2jn6a1 36 NRVTLKNWIIKYGSNHNVQGTT------PSAAVSEAEQIRQLKKENALQRAR 81 (89)
T ss_dssp CHHHHHHHHHHHCCCSTTCSCC------CCHHHHTHHHHHHHHHCGGGGGGT
T ss_pred CHHHHHHHHHHHhhcccccCCC------CCcchhHHHHHHHHHHHHHHHHHH
Confidence 3566899998754222211111 011122345689999999988764
No 9
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]}
Probab=12.46 E-value=2.7e+02 Score=22.62 Aligned_cols=64 Identities=9% Similarity=0.200 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhh-hHHHHHHHHHHHHHhhhhhHHHHHHhhhh
Q 006796 209 LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIH-SDKFISNAIAELRLCHSQLRVHVVNSLEE 279 (630)
Q Consensus 209 LEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~-~dk~i~ngis~Lq~~h~~~R~~Im~lL~e 279 (630)
.+++|+.+++.+ +|||-.+++.+..-++.|..+..- .++ +.+.=..+-..|...+..+++++..
T Consensus 2 f~~~L~~l~~~i------~~M~~~v~~~l~~a~~al~~~D~~~a~~-v~~~d~~id~l~~~I~~~~~~~ia~ 66 (212)
T d1xwma_ 2 FADDLASLHNKL------IEMGRLTEVALQQAIEAFQTQNANLAMA-VIDGDGSIDALEEEVNDFALWLIAA 66 (212)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 356777777665 578988889988888888765432 333 3333345666677777777776643
No 10
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.13 E-value=83 Score=24.35 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 006796 205 YISALEDELEKTRSSVENLQSKL 227 (630)
Q Consensus 205 yisALEeEle~lr~si~~LQskL 227 (630)
-+-..|+||+.-+++|..||+.|
T Consensus 27 sV~diE~eLerCk~~irrLeqel 49 (67)
T d1k1fa_ 27 SVGDIEQELERAKASIRRLEQEV 49 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999876
Done!