Query 006800
Match_columns 630
No_of_seqs 464 out of 3197
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 09:18:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.9E-67 1E-71 567.5 46.8 391 210-604 41-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 2.4E-60 8.1E-65 511.4 48.2 394 213-608 3-413 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 3.1E-57 1.1E-61 486.2 38.4 372 221-599 33-404 (410)
4 3eiq_A Eukaryotic initiation f 100.0 4.2E-56 1.4E-60 477.8 35.9 379 219-604 34-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 3E-54 1E-58 461.4 39.3 372 221-601 17-388 (400)
6 1xti_A Probable ATP-dependent 100.0 1.4E-53 4.8E-58 454.5 38.6 368 225-600 8-380 (391)
7 1fuu_A Yeast initiation factor 100.0 5.5E-55 1.9E-59 465.7 25.2 377 220-604 16-392 (394)
8 3pey_A ATP-dependent RNA helic 100.0 1.6E-52 5.4E-57 446.6 41.5 358 222-590 2-369 (395)
9 1hv8_A Putative ATP-dependent 100.0 3.6E-52 1.2E-56 439.3 43.1 354 224-592 5-359 (367)
10 3fht_A ATP-dependent RNA helic 100.0 9.5E-53 3.2E-57 451.2 38.5 368 221-598 21-400 (412)
11 3sqw_A ATP-dependent RNA helic 100.0 9.8E-53 3.3E-57 470.6 39.3 364 225-590 17-410 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 4.6E-52 1.6E-56 464.4 40.5 357 232-590 79-461 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 8.1E-54 2.8E-58 469.1 21.9 367 222-598 89-467 (479)
14 2z0m_A 337AA long hypothetical 100.0 5.5E-50 1.9E-54 417.7 39.8 335 232-591 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 3.6E-49 1.2E-53 438.7 35.8 349 222-587 16-383 (591)
16 3fho_A ATP-dependent RNA helic 100.0 1.8E-50 6.3E-55 444.5 18.4 372 218-600 112-493 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 2.4E-47 8.3E-52 419.8 35.9 341 224-588 1-353 (523)
18 3oiy_A Reverse gyrase helicase 100.0 7.5E-48 2.6E-52 413.9 28.9 326 236-591 10-376 (414)
19 1tf5_A Preprotein translocase 100.0 2.2E-46 7.7E-51 416.3 24.3 372 181-580 21-547 (844)
20 3l9o_A ATP-dependent RNA helic 100.0 2.7E-46 9.1E-51 440.8 20.8 331 226-578 163-597 (1108)
21 4a2p_A RIG-I, retinoic acid in 100.0 6.7E-45 2.3E-49 405.7 30.0 331 245-581 5-511 (556)
22 2va8_A SSO2462, SKI2-type heli 100.0 4.7E-44 1.6E-48 410.2 33.9 338 225-580 8-410 (715)
23 2zj8_A DNA helicase, putative 100.0 1.6E-44 5.5E-49 414.1 27.6 334 226-579 2-388 (720)
24 3tbk_A RIG-I helicase domain; 100.0 2.7E-44 9.3E-49 400.5 27.1 334 246-586 3-515 (555)
25 2ykg_A Probable ATP-dependent 100.0 3.5E-45 1.2E-49 419.1 18.8 342 238-585 4-523 (696)
26 2p6r_A Afuhel308 helicase; pro 100.0 1.7E-44 5.9E-49 412.6 23.2 334 226-580 2-390 (702)
27 4a2q_A RIG-I, retinoic acid in 100.0 1.7E-43 5.9E-48 409.4 31.6 333 243-581 244-752 (797)
28 4ddu_A Reverse gyrase; topoiso 100.0 8.4E-43 2.9E-47 410.9 29.2 320 243-592 75-504 (1104)
29 2fsf_A Preprotein translocase 100.0 3.8E-43 1.3E-47 389.2 24.5 323 243-581 71-586 (853)
30 1gku_B Reverse gyrase, TOP-RG; 100.0 1.7E-43 5.7E-48 417.2 22.5 320 242-592 53-468 (1054)
31 1wp9_A ATP-dependent RNA helic 100.0 5.2E-42 1.8E-46 374.8 31.1 323 247-580 9-477 (494)
32 4a2w_A RIG-I, retinoic acid in 100.0 1.9E-42 6.7E-47 404.9 29.0 331 244-580 245-751 (936)
33 2xgj_A ATP-dependent RNA helic 100.0 1.3E-41 4.4E-46 397.6 35.9 318 244-585 84-507 (1010)
34 1nkt_A Preprotein translocase 100.0 2E-41 6.7E-46 375.7 31.4 347 243-605 108-652 (922)
35 3fe2_A Probable ATP-dependent 100.0 2.2E-40 7.5E-45 329.0 30.4 239 198-436 2-240 (242)
36 4gl2_A Interferon-induced heli 100.0 3.5E-42 1.2E-46 394.4 18.8 325 246-577 6-517 (699)
37 4f92_B U5 small nuclear ribonu 100.0 7.4E-40 2.5E-44 398.6 34.8 346 231-587 910-1317(1724)
38 4a4z_A Antiviral helicase SKI2 100.0 1.9E-40 6.5E-45 387.8 28.0 308 247-576 39-490 (997)
39 1gm5_A RECG; helicase, replica 100.0 9.5E-41 3.2E-45 378.7 21.6 332 235-593 357-711 (780)
40 2eyq_A TRCF, transcription-rep 100.0 6.4E-39 2.2E-43 380.3 36.7 324 230-579 586-923 (1151)
41 4f92_B U5 small nuclear ribonu 100.0 3.3E-39 1.1E-43 392.9 30.1 338 244-586 76-481 (1724)
42 2whx_A Serine protease/ntpase/ 100.0 2.4E-41 8.3E-46 377.0 7.4 326 230-601 155-504 (618)
43 2oca_A DAR protein, ATP-depend 100.0 4.7E-40 1.6E-44 362.8 14.5 312 246-576 112-453 (510)
44 2jlq_A Serine protease subunit 100.0 7.4E-40 2.5E-44 354.3 12.0 312 244-601 1-337 (451)
45 1yks_A Genome polyprotein [con 100.0 2E-39 6.8E-44 349.5 8.6 289 258-601 4-325 (440)
46 2fwr_A DNA repair protein RAD2 100.0 2.1E-38 7.3E-43 346.1 15.9 295 246-578 92-454 (472)
47 2xau_A PRE-mRNA-splicing facto 100.0 6.4E-38 2.2E-42 357.9 18.3 338 221-580 68-445 (773)
48 1wrb_A DJVLGB; RNA helicase, D 100.0 1.1E-36 3.6E-41 304.6 23.6 235 212-446 8-252 (253)
49 2wv9_A Flavivirin protease NS2 100.0 3.1E-39 1.1E-43 362.1 4.4 314 240-598 203-556 (673)
50 3iuy_A Probable ATP-dependent 100.0 3.6E-36 1.2E-40 295.8 24.1 216 217-433 11-228 (228)
51 3o8b_A HCV NS3 protease/helica 100.0 3.9E-38 1.3E-42 347.9 11.0 279 247-582 217-518 (666)
52 3ber_A Probable ATP-dependent 100.0 4.3E-35 1.5E-39 291.8 26.5 209 221-434 39-248 (249)
53 2z83_A Helicase/nucleoside tri 100.0 4.2E-37 1.4E-41 333.4 12.6 272 256-578 15-313 (459)
54 3bor_A Human initiation factor 100.0 3.5E-35 1.2E-39 290.5 23.2 213 217-434 22-235 (237)
55 3dkp_A Probable ATP-dependent 100.0 2.6E-35 8.9E-40 293.0 22.4 230 203-436 3-243 (245)
56 2v6i_A RNA helicase; membrane, 100.0 1.6E-35 5.4E-40 318.3 22.1 271 261-576 1-289 (431)
57 2pl3_A Probable ATP-dependent 100.0 1.8E-34 6.3E-39 285.2 27.1 227 201-434 6-233 (236)
58 3h1t_A Type I site-specific re 100.0 6.8E-36 2.3E-40 335.2 18.2 304 246-565 177-544 (590)
59 3fmo_B ATP-dependent RNA helic 100.0 1.1E-34 3.7E-39 296.7 23.9 204 223-434 90-298 (300)
60 2oxc_A Probable ATP-dependent 100.0 1.4E-34 4.7E-39 284.9 23.7 211 217-433 16-228 (230)
61 1q0u_A Bstdead; DEAD protein, 100.0 6.7E-35 2.3E-39 284.9 21.0 208 223-435 2-213 (219)
62 1vec_A ATP-dependent RNA helic 100.0 3.8E-34 1.3E-38 276.7 25.5 202 225-431 3-205 (206)
63 1qde_A EIF4A, translation init 100.0 3E-34 1E-38 281.2 24.0 212 218-435 7-218 (224)
64 2gxq_A Heat resistant RNA depe 100.0 8E-34 2.7E-38 274.6 26.1 204 226-433 2-205 (207)
65 1z63_A Helicase of the SNF2/RA 100.0 1.2E-33 4.1E-38 310.8 25.9 312 246-578 36-453 (500)
66 3dmq_A RNA polymerase-associat 100.0 2.7E-34 9.2E-39 336.5 21.4 332 246-590 152-625 (968)
67 3ly5_A ATP-dependent RNA helic 100.0 2E-33 6.8E-38 282.0 24.6 204 225-429 52-258 (262)
68 3rc3_A ATP-dependent RNA helic 100.0 5.2E-34 1.8E-38 318.8 20.9 285 255-585 148-451 (677)
69 1t6n_A Probable ATP-dependent 100.0 2.4E-33 8.3E-38 274.0 22.8 208 220-432 9-219 (220)
70 3jux_A Protein translocase sub 100.0 1.5E-32 5.2E-37 298.2 29.9 341 247-605 75-622 (822)
71 3mwy_W Chromo domain-containin 100.0 6.2E-33 2.1E-37 320.3 27.1 375 185-578 177-684 (800)
72 1z3i_X Similar to RAD54-like; 100.0 2.7E-31 9.2E-36 299.3 36.0 322 246-578 54-528 (644)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 9.1E-31 3.1E-35 304.3 22.5 313 246-577 270-708 (1038)
74 2ipc_A Preprotein translocase 100.0 7.9E-28 2.7E-32 265.9 32.3 318 243-580 76-700 (997)
75 2p6n_A ATP-dependent RNA helic 100.0 2.1E-28 7.3E-33 232.7 18.2 180 422-605 9-189 (191)
76 2jgn_A DBX, DDX3, ATP-dependen 100.0 2.2E-27 7.6E-32 224.7 18.4 168 438-607 15-182 (185)
77 1c4o_A DNA nucleotide excision 100.0 5.3E-27 1.8E-31 264.0 24.6 174 402-586 379-558 (664)
78 2d7d_A Uvrabc system protein B 99.9 5.8E-26 2E-30 255.5 24.9 172 402-584 385-562 (661)
79 2rb4_A ATP-dependent RNA helic 99.9 3.3E-25 1.1E-29 208.1 17.0 153 439-593 4-162 (175)
80 2hjv_A ATP-dependent RNA helic 99.9 5.3E-25 1.8E-29 204.1 17.8 150 438-590 5-154 (163)
81 1fuk_A Eukaryotic initiation f 99.9 6.5E-26 2.2E-30 210.8 10.2 158 442-601 3-160 (165)
82 1t5i_A C_terminal domain of A 99.9 4.3E-25 1.5E-29 206.5 15.5 159 440-601 3-162 (172)
83 3eaq_A Heat resistant RNA depe 99.9 9.5E-24 3.2E-28 204.3 16.5 140 452-593 14-153 (212)
84 3b6e_A Interferon-induced heli 99.9 9E-24 3.1E-28 205.0 12.0 166 244-412 30-216 (216)
85 3i32_A Heat resistant RNA depe 99.9 8.4E-23 2.9E-27 207.1 17.2 147 443-592 3-149 (300)
86 2vl7_A XPD; helicase, unknown 99.9 2.3E-22 8E-27 221.8 22.0 299 244-574 5-518 (540)
87 2yjt_D ATP-dependent RNA helic 99.8 1.4E-24 4.8E-29 202.7 0.0 148 442-591 3-150 (170)
88 3crv_A XPD/RAD3 related DNA he 99.9 3.5E-20 1.2E-24 205.2 28.6 307 247-574 3-528 (551)
89 1rif_A DAR protein, DNA helica 99.9 5.7E-22 1.9E-26 200.9 11.3 155 246-417 112-266 (282)
90 3llm_A ATP-dependent RNA helic 99.9 1.8E-21 6.3E-26 191.6 14.5 175 241-429 55-232 (235)
91 4a15_A XPD helicase, ATP-depen 99.8 1.4E-18 4.9E-23 193.7 23.5 313 247-574 3-581 (620)
92 2fz4_A DNA repair protein RAD2 99.8 1.5E-18 5.2E-23 170.7 15.6 139 246-416 92-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 2.2E-18 7.5E-23 172.5 11.0 127 452-578 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 4.1E-09 1.4E-13 117.4 9.4 145 249-412 151-298 (608)
95 3hgt_A HDA1 complex subunit 3; 98.2 4.1E-06 1.4E-10 83.9 10.4 124 453-581 107-240 (328)
96 2gk6_A Regulator of nonsense t 98.2 1.3E-05 4.4E-10 89.6 15.6 70 245-321 178-247 (624)
97 4b3f_X DNA-binding protein smu 98.2 3E-06 1E-10 95.2 10.1 68 246-321 188-256 (646)
98 2xzl_A ATP-dependent helicase 98.1 1.8E-05 6.1E-10 90.5 13.2 70 245-321 358-427 (802)
99 3e1s_A Exodeoxyribonuclease V, 98.1 1.8E-05 6.2E-10 87.1 12.1 126 246-410 188-313 (574)
100 2wjy_A Regulator of nonsense t 98.0 2.8E-05 9.5E-10 88.8 13.8 70 245-321 354-423 (800)
101 3upu_A ATP-dependent DNA helic 98.0 2.1E-05 7.1E-10 84.6 11.0 68 243-317 21-93 (459)
102 3lfu_A DNA helicase II; SF1 he 97.9 0.00019 6.6E-09 80.5 17.6 72 246-323 8-79 (647)
103 2o0j_A Terminase, DNA packagin 97.4 0.0015 5.3E-08 67.6 13.2 143 247-410 163-311 (385)
104 3cpe_A Terminase, DNA packagin 97.1 0.004 1.4E-07 68.9 13.6 146 247-414 163-314 (592)
105 3ec2_A DNA replication protein 96.5 0.0054 1.8E-07 56.3 7.8 30 249-278 16-54 (180)
106 2orw_A Thymidine kinase; TMTK, 96.5 0.015 5.3E-07 53.6 10.6 40 261-308 2-41 (184)
107 1pjr_A PCRA; DNA repair, DNA r 96.5 0.015 5.1E-07 65.9 12.5 110 246-383 10-121 (724)
108 1xx6_A Thymidine kinase; NESG, 96.2 0.013 4.3E-07 54.5 8.5 39 262-308 8-46 (191)
109 3vkw_A Replicase large subunit 96.1 0.012 4E-07 61.8 8.3 105 264-410 163-267 (446)
110 1uaa_A REP helicase, protein ( 95.8 0.01 3.5E-07 66.8 6.9 71 247-323 2-72 (673)
111 2j9r_A Thymidine kinase; TK1, 95.8 0.0086 3E-07 56.3 5.3 39 262-308 28-66 (214)
112 2kjq_A DNAA-related protein; s 95.7 0.0032 1.1E-07 56.1 1.9 18 261-278 35-52 (149)
113 3te6_A Regulatory protein SIR3 95.7 0.071 2.4E-06 53.6 11.9 26 261-287 44-69 (318)
114 1l8q_A Chromosomal replication 95.7 0.05 1.7E-06 55.0 10.8 17 262-278 37-53 (324)
115 2b8t_A Thymidine kinase; deoxy 95.6 0.014 4.8E-07 55.6 6.0 92 261-385 11-102 (223)
116 1d2n_A N-ethylmaleimide-sensit 95.6 0.14 4.9E-06 50.1 13.4 16 263-278 65-80 (272)
117 2zpa_A Uncharacterized protein 95.5 0.034 1.2E-06 61.3 9.1 113 247-414 175-289 (671)
118 3kl4_A SRP54, signal recogniti 95.3 0.055 1.9E-06 56.8 9.6 132 263-425 98-235 (433)
119 2w58_A DNAI, primosome compone 95.1 0.087 3E-06 49.0 9.6 16 263-278 55-70 (202)
120 2orv_A Thymidine kinase; TP4A 95.0 0.024 8.1E-07 53.9 5.4 40 261-308 18-57 (234)
121 2p65_A Hypothetical protein PF 95.0 0.16 5.6E-06 45.9 11.1 17 262-278 43-59 (187)
122 3u4q_A ATP-dependent helicase/ 94.9 0.047 1.6E-06 65.6 8.9 73 246-322 9-81 (1232)
123 2v1u_A Cell division control p 94.9 0.06 2E-06 55.5 8.6 18 261-278 43-60 (387)
124 2z4s_A Chromosomal replication 94.6 0.13 4.3E-06 54.5 10.4 43 372-414 194-238 (440)
125 3e2i_A Thymidine kinase; Zn-bi 94.6 0.051 1.8E-06 51.0 6.3 99 261-397 27-125 (219)
126 1w4r_A Thymidine kinase; type 94.5 0.079 2.7E-06 49.0 7.3 39 261-307 19-57 (195)
127 1jbk_A CLPB protein; beta barr 94.4 0.29 9.9E-06 44.3 11.3 17 262-278 43-59 (195)
128 3h4m_A Proteasome-activating n 94.1 0.05 1.7E-06 53.7 5.7 53 223-278 12-67 (285)
129 3dm5_A SRP54, signal recogniti 94.0 0.25 8.7E-06 51.8 10.8 131 263-424 101-235 (443)
130 3eie_A Vacuolar protein sortin 93.9 0.59 2E-05 47.0 13.1 50 223-278 13-67 (322)
131 1gm5_A RECG; helicase, replica 93.8 0.084 2.9E-06 59.9 7.3 97 450-546 396-498 (780)
132 2qby_B CDC6 homolog 3, cell di 93.8 0.27 9.2E-06 50.5 10.8 36 375-411 136-172 (384)
133 1a5t_A Delta prime, HOLB; zinc 93.7 0.18 6E-06 51.2 8.9 40 248-288 3-49 (334)
134 2chg_A Replication factor C sm 93.7 0.45 1.5E-05 44.2 11.3 39 371-410 101-139 (226)
135 1fnn_A CDC6P, cell division co 93.6 0.13 4.6E-06 52.9 8.0 15 264-278 46-60 (389)
136 1g5t_A COB(I)alamin adenosyltr 93.5 0.69 2.4E-05 42.7 11.5 52 371-422 119-172 (196)
137 3cf0_A Transitional endoplasmi 93.5 0.15 5.2E-06 50.8 7.8 53 223-278 10-65 (301)
138 3bos_A Putative DNA replicatio 93.5 0.091 3.1E-06 50.0 5.9 18 261-278 51-68 (242)
139 2qgz_A Helicase loader, putati 93.4 0.18 6E-06 50.6 8.0 17 262-278 152-168 (308)
140 3u61_B DNA polymerase accessor 93.3 0.1 3.6E-06 52.5 6.4 40 371-410 104-143 (324)
141 4b4t_M 26S protease regulatory 93.1 0.36 1.2E-05 50.6 10.2 55 221-278 174-231 (434)
142 2qby_A CDC6 homolog 1, cell di 92.7 0.33 1.1E-05 49.7 9.2 17 262-278 45-61 (386)
143 3syl_A Protein CBBX; photosynt 92.4 0.16 5.5E-06 50.6 6.1 16 263-278 68-83 (309)
144 1sxj_E Activator 1 40 kDa subu 92.3 0.36 1.2E-05 49.1 8.8 43 370-413 132-174 (354)
145 4b4t_J 26S protease regulatory 92.0 0.55 1.9E-05 48.6 9.6 53 223-278 143-198 (405)
146 1njg_A DNA polymerase III subu 91.9 2.2 7.4E-05 39.9 13.5 15 264-278 47-61 (250)
147 3pfi_A Holliday junction ATP-d 91.5 0.54 1.8E-05 47.4 9.0 16 263-278 56-71 (338)
148 2q6t_A DNAB replication FORK h 91.3 0.64 2.2E-05 49.1 9.7 115 261-386 199-324 (444)
149 2dr3_A UPF0273 protein PH0284; 91.1 1.4 4.9E-05 41.7 11.2 50 261-319 22-71 (247)
150 2r6a_A DNAB helicase, replicat 91.0 0.87 3E-05 48.2 10.3 115 261-386 202-327 (454)
151 3oiy_A Reverse gyrase helicase 90.8 0.41 1.4E-05 49.8 7.6 78 469-546 63-147 (414)
152 1iqp_A RFCS; clamp loader, ext 90.5 1 3.5E-05 44.8 10.0 39 371-410 109-147 (327)
153 1t6n_A Probable ATP-dependent 90.2 1.5 5.3E-05 40.8 10.4 73 470-545 82-165 (220)
154 2p6n_A ATP-dependent RNA helic 90.1 2.4 8.1E-05 38.8 11.3 71 298-378 54-128 (191)
155 2qz4_A Paraplegin; AAA+, SPG7, 90.0 1.5 5.1E-05 42.1 10.3 17 262-278 39-55 (262)
156 1sxj_D Activator 1 41 kDa subu 89.9 0.5 1.7E-05 47.8 7.1 39 371-410 132-170 (353)
157 3pvs_A Replication-associated 89.9 0.34 1.2E-05 51.2 5.9 16 263-278 51-66 (447)
158 2qp9_X Vacuolar protein sortin 89.9 0.78 2.7E-05 46.8 8.5 16 263-278 85-100 (355)
159 3hu3_A Transitional endoplasmi 89.8 0.83 2.8E-05 48.8 8.9 43 373-415 298-350 (489)
160 3vfd_A Spastin; ATPase, microt 89.7 1 3.5E-05 46.5 9.3 17 262-278 148-164 (389)
161 1xwi_A SKD1 protein; VPS4B, AA 89.7 1.8 6.2E-05 43.4 10.9 46 223-278 7-61 (322)
162 4b4t_K 26S protease regulatory 89.5 1.2 4.1E-05 46.5 9.6 54 222-278 166-222 (428)
163 2eyq_A TRCF, transcription-rep 89.2 1 3.5E-05 53.5 9.9 99 446-544 627-731 (1151)
164 4a1f_A DNAB helicase, replicat 89.0 0.56 1.9E-05 47.5 6.4 114 261-385 45-169 (338)
165 3hjh_A Transcription-repair-co 88.3 1.2 4.1E-05 47.4 8.7 52 261-323 13-64 (483)
166 1sxj_C Activator 1 40 kDa subu 88.3 2.4 8E-05 42.7 10.7 39 371-410 109-147 (340)
167 2fna_A Conserved hypothetical 88.1 17 0.00056 36.1 17.1 54 355-413 123-179 (357)
168 3uk6_A RUVB-like 2; hexameric 88.0 3.2 0.00011 42.0 11.7 17 262-278 70-86 (368)
169 3bh0_A DNAB-like replicative h 88.0 1.5 5E-05 43.9 8.8 38 261-306 67-104 (315)
170 2oxc_A Probable ATP-dependent 87.9 3 0.0001 39.2 10.6 91 449-544 67-172 (230)
171 1sxj_A Activator 1 95 kDa subu 87.9 1 3.6E-05 48.5 8.1 41 371-413 147-189 (516)
172 1jr3_A DNA polymerase III subu 87.8 2.4 8.4E-05 43.0 10.6 15 264-278 40-54 (373)
173 1w5s_A Origin recognition comp 87.5 1.7 5.9E-05 44.8 9.4 16 263-278 51-68 (412)
174 1n0w_A DNA repair protein RAD5 87.3 3.1 0.00011 39.1 10.5 18 261-278 23-40 (243)
175 1ixz_A ATP-dependent metallopr 87.2 3.5 0.00012 39.4 10.8 61 222-287 10-72 (254)
176 2gno_A DNA polymerase III, gam 87.1 3 0.0001 41.4 10.4 15 264-278 20-34 (305)
177 3ber_A Probable ATP-dependent 87.1 2.3 8E-05 40.7 9.4 71 470-544 111-192 (249)
178 2hjv_A ATP-dependent RNA helic 86.8 2.4 8.4E-05 37.5 8.7 72 298-379 35-110 (163)
179 2zan_A Vacuolar protein sortin 86.8 2.3 7.8E-05 44.8 9.8 17 262-278 167-183 (444)
180 1hqc_A RUVB; extended AAA-ATPa 86.5 1 3.5E-05 44.9 6.7 17 262-278 38-54 (324)
181 1sxj_B Activator 1 37 kDa subu 86.2 1.6 5.4E-05 43.3 7.9 38 372-410 107-144 (323)
182 1xti_A Probable ATP-dependent 85.3 4.1 0.00014 41.4 10.8 73 469-544 75-158 (391)
183 3e70_C DPA, signal recognition 85.3 3.2 0.00011 41.7 9.6 54 372-425 211-265 (328)
184 4ddu_A Reverse gyrase; topoiso 85.1 1.2 4E-05 52.7 7.1 97 450-546 100-204 (1104)
185 1qvr_A CLPB protein; coiled co 84.9 2.4 8.4E-05 48.6 9.6 16 263-278 192-207 (854)
186 1fuk_A Eukaryotic initiation f 84.1 3.1 0.00011 36.8 8.1 72 298-379 30-105 (165)
187 3m6a_A ATP-dependent protease 84.1 1.1 3.9E-05 48.5 6.0 26 261-288 107-132 (543)
188 2rb4_A ATP-dependent RNA helic 83.9 4.4 0.00015 36.2 9.0 71 298-378 34-108 (175)
189 3eaq_A Heat resistant RNA depe 83.8 3.4 0.00012 38.4 8.6 71 298-378 31-105 (212)
190 1oyw_A RECQ helicase, ATP-depe 83.5 1.8 6E-05 46.7 7.2 59 470-528 65-123 (523)
191 3co5_A Putative two-component 83.0 0.93 3.2E-05 39.3 3.9 21 258-278 23-43 (143)
192 2ehv_A Hypothetical protein PH 82.9 0.84 2.9E-05 43.5 3.9 44 371-414 134-182 (251)
193 2v1x_A ATP-dependent DNA helic 82.8 3.8 0.00013 44.8 9.6 78 448-528 64-144 (591)
194 2l82_A Designed protein OR32; 82.7 13 0.00043 29.9 9.9 51 473-523 5-55 (162)
195 2zts_A Putative uncharacterize 82.1 1.9 6.6E-05 40.8 6.2 24 261-285 29-52 (251)
196 1vec_A ATP-dependent RNA helic 82.1 6.8 0.00023 35.7 9.9 71 470-544 71-152 (206)
197 2ce7_A Cell division protein F 82.0 1.1 3.9E-05 47.4 4.8 16 263-278 50-65 (476)
198 3bor_A Human initiation factor 82.0 4.1 0.00014 38.5 8.4 73 469-544 97-179 (237)
199 1nlf_A Regulatory protein REPA 81.9 5.4 0.00019 38.7 9.5 20 259-278 27-46 (279)
200 3fe2_A Probable ATP-dependent 81.8 4.6 0.00016 38.2 8.8 71 470-544 102-182 (242)
201 3n70_A Transport activator; si 81.5 1.1 3.6E-05 39.1 3.7 19 260-278 22-40 (145)
202 1ls1_A Signal recognition part 80.7 11 0.00036 37.1 11.2 52 371-422 179-231 (295)
203 2jgn_A DBX, DDX3, ATP-dependen 80.4 2.7 9.1E-05 38.2 6.2 71 298-378 46-120 (185)
204 2pl3_A Probable ATP-dependent 80.2 4.6 0.00016 38.0 8.1 70 470-544 97-177 (236)
205 3cmu_A Protein RECA, recombina 80.1 2.3 7.8E-05 52.8 7.0 44 256-307 1415-1464(2050)
206 2i4i_A ATP-dependent RNA helic 79.0 8.6 0.00029 39.4 10.4 72 297-378 275-350 (417)
207 1t5i_A C_terminal domain of A 79.0 5.2 0.00018 35.7 7.6 71 298-378 31-105 (172)
208 2yhs_A FTSY, cell division pro 78.5 5.8 0.0002 42.0 8.7 24 263-288 294-317 (503)
209 2z43_A DNA repair and recombin 78.2 8.7 0.0003 38.3 9.8 44 261-306 106-149 (324)
210 1e9r_A Conjugal transfer prote 77.9 1.9 6.7E-05 45.1 5.0 44 261-312 52-95 (437)
211 1r6b_X CLPA protein; AAA+, N-t 77.8 8.8 0.0003 43.3 10.8 18 261-278 206-223 (758)
212 2gxq_A Heat resistant RNA depe 77.4 10 0.00035 34.4 9.4 71 470-544 72-150 (207)
213 1qde_A EIF4A, translation init 77.3 7.7 0.00026 35.9 8.6 92 448-544 56-161 (224)
214 2i1q_A DNA repair and recombin 77.1 9.4 0.00032 37.9 9.7 30 255-285 86-120 (322)
215 3iuy_A Probable ATP-dependent 77.0 4.3 0.00015 38.0 6.7 71 470-544 94-173 (228)
216 3cf2_A TER ATPase, transitiona 76.2 3 0.0001 47.1 6.1 60 222-286 471-533 (806)
217 1wrb_A DJVLGB; RNA helicase, D 75.9 20 0.00067 33.9 11.3 71 470-544 100-180 (253)
218 3cf2_A TER ATPase, transitiona 75.4 3.7 0.00013 46.4 6.6 16 263-278 239-254 (806)
219 3i5x_A ATP-dependent RNA helic 75.4 29 0.00099 37.2 13.8 77 297-380 338-418 (563)
220 1pzn_A RAD51, DNA repair and r 75.1 14 0.0005 37.1 10.5 24 255-278 119-147 (349)
221 3gk5_A Uncharacterized rhodane 75.0 3.8 0.00013 33.5 5.0 47 459-505 44-90 (108)
222 2l8b_A Protein TRAI, DNA helic 74.8 3.2 0.00011 37.6 4.7 120 249-412 36-158 (189)
223 2ffh_A Protein (FFH); SRP54, s 74.6 19 0.00067 37.3 11.4 18 261-278 97-114 (425)
224 1ypw_A Transitional endoplasmi 74.5 9.8 0.00033 43.2 9.9 18 261-278 237-254 (806)
225 2eyu_A Twitching motility prot 74.3 1.9 6.6E-05 41.7 3.5 20 259-278 22-41 (261)
226 1q0u_A Bstdead; DEAD protein, 73.4 3.5 0.00012 38.3 5.0 71 470-544 72-156 (219)
227 1p9r_A General secretion pathw 73.1 5.3 0.00018 41.5 6.7 18 261-278 166-183 (418)
228 1gku_B Reverse gyrase, TOP-RG; 73.0 4.7 0.00016 47.4 7.0 74 469-544 98-181 (1054)
229 1wp9_A ATP-dependent RNA helic 72.7 7.9 0.00027 40.3 8.2 90 450-544 30-131 (494)
230 3sqw_A ATP-dependent RNA helic 71.9 38 0.0013 36.5 13.6 76 298-380 288-367 (579)
231 3cmw_A Protein RECA, recombina 71.2 3.4 0.00012 50.5 5.2 128 255-416 1418-1570(1706)
232 1v5w_A DMC1, meiotic recombina 71.2 13 0.00044 37.4 9.0 50 256-307 111-165 (343)
233 3jvv_A Twitching mobility prot 70.8 4.5 0.00015 41.1 5.4 18 261-278 122-139 (356)
234 2j37_W Signal recognition part 70.7 24 0.00083 37.4 11.3 15 264-278 103-117 (504)
235 3b85_A Phosphate starvation-in 70.6 4.2 0.00014 37.8 4.7 32 247-278 7-38 (208)
236 3u4q_B ATP-dependent helicase/ 70.6 6.7 0.00023 46.7 7.7 39 265-308 4-42 (1166)
237 2oap_1 GSPE-2, type II secreti 70.5 4.5 0.00015 43.3 5.6 31 248-278 245-276 (511)
238 3fht_A ATP-dependent RNA helic 70.0 13 0.00046 37.8 9.0 71 298-378 266-340 (412)
239 4b4t_L 26S protease subunit RP 69.7 2.8 9.6E-05 43.8 3.6 54 222-278 175-231 (437)
240 1hv8_A Putative ATP-dependent 69.6 12 0.00042 37.2 8.5 71 298-378 238-312 (367)
241 1fuu_A Yeast initiation factor 69.5 18 0.0006 36.6 9.8 90 450-544 65-168 (394)
242 3ly5_A ATP-dependent RNA helic 69.3 14 0.00049 35.3 8.5 71 470-544 126-207 (262)
243 3pey_A ATP-dependent RNA helic 69.0 15 0.0005 37.1 9.1 75 298-382 243-321 (395)
244 2r44_A Uncharacterized protein 68.8 4.2 0.00014 40.6 4.7 30 256-287 40-69 (331)
245 3nbx_X ATPase RAVA; AAA+ ATPas 67.0 6.4 0.00022 42.0 5.8 27 252-278 31-57 (500)
246 3i32_A Heat resistant RNA depe 66.7 11 0.00036 37.2 7.0 71 298-378 28-102 (300)
247 1ofh_A ATP-dependent HSL prote 66.7 15 0.00051 35.8 8.2 18 261-278 49-66 (310)
248 1wv9_A Rhodanese homolog TT165 66.6 6.2 0.00021 31.1 4.4 41 464-505 48-88 (94)
249 1s2m_A Putative ATP-dependent 66.6 23 0.00077 35.9 9.9 72 469-544 88-169 (400)
250 3hws_A ATP-dependent CLP prote 66.0 12 0.0004 37.9 7.4 25 261-287 50-74 (363)
251 1lvg_A Guanylate kinase, GMP k 66.0 4.2 0.00014 37.3 3.7 26 261-288 3-28 (198)
252 1kgd_A CASK, peripheral plasma 65.9 3.4 0.00011 37.2 2.9 19 260-278 3-21 (180)
253 2d7d_A Uvrabc system protein B 65.9 35 0.0012 37.6 11.8 77 298-384 445-525 (661)
254 2j0s_A ATP-dependent RNA helic 65.5 19 0.00065 36.7 9.1 71 298-378 276-350 (410)
255 4b4t_I 26S protease regulatory 65.4 3 0.0001 43.3 2.7 54 222-278 176-232 (437)
256 2db3_A ATP-dependent RNA helic 65.4 17 0.00057 37.8 8.7 69 300-378 302-374 (434)
257 4ag6_A VIRB4 ATPase, type IV s 65.0 6.7 0.00023 40.3 5.4 41 261-309 34-74 (392)
258 1u0j_A DNA replication protein 65.0 13 0.00043 36.0 6.9 43 234-279 73-121 (267)
259 3fmo_B ATP-dependent RNA helic 64.9 9.3 0.00032 37.6 6.2 68 470-544 162-241 (300)
260 1w36_B RECB, exodeoxyribonucle 64.9 12 0.0004 44.7 8.1 60 264-323 18-81 (1180)
261 1tf7_A KAIC; homohexamer, hexa 64.4 37 0.0013 36.2 11.4 125 261-412 280-416 (525)
262 3flh_A Uncharacterized protein 64.1 5.6 0.00019 33.3 3.8 46 460-505 61-108 (124)
263 3foj_A Uncharacterized protein 64.1 3.9 0.00013 32.8 2.7 37 469-505 55-91 (100)
264 2bjv_A PSP operon transcriptio 63.8 4.6 0.00016 38.8 3.7 19 260-278 27-45 (265)
265 3a8t_A Adenylate isopentenyltr 63.7 3.8 0.00013 41.2 3.0 16 263-278 41-56 (339)
266 2gza_A Type IV secretion syste 63.7 4.9 0.00017 40.9 4.0 26 259-286 172-197 (361)
267 1yks_A Genome polyprotein [con 63.7 7.9 0.00027 40.5 5.7 68 298-377 177-245 (440)
268 3vaa_A Shikimate kinase, SK; s 63.5 4.2 0.00014 37.2 3.2 19 260-278 23-41 (199)
269 3eiq_A Eukaryotic initiation f 63.4 28 0.00095 35.4 9.9 92 450-544 84-189 (414)
270 3iwh_A Rhodanese-like domain p 62.9 4 0.00014 33.1 2.6 38 467-504 53-90 (103)
271 1vma_A Cell division protein F 62.8 29 0.001 34.1 9.4 17 262-278 104-120 (306)
272 3eme_A Rhodanese-like domain p 62.8 4 0.00014 32.8 2.6 37 469-505 55-91 (103)
273 2px0_A Flagellar biosynthesis 62.6 8.3 0.00028 37.9 5.3 18 261-278 104-121 (296)
274 2v6i_A RNA helicase; membrane, 62.6 9.7 0.00033 39.7 6.1 54 298-356 171-225 (431)
275 4b4t_H 26S protease regulatory 62.2 3 0.0001 43.8 2.0 54 222-278 203-259 (467)
276 1qhx_A CPT, protein (chloramph 62.2 3.4 0.00012 36.8 2.3 17 262-278 3-19 (178)
277 3bgw_A DNAB-like replicative h 61.5 8.1 0.00028 40.5 5.3 38 261-306 196-233 (444)
278 2qmh_A HPR kinase/phosphorylas 61.4 3.9 0.00013 37.7 2.4 18 261-278 33-50 (205)
279 3trf_A Shikimate kinase, SK; a 61.4 4.8 0.00017 36.1 3.1 17 262-278 5-21 (185)
280 3g5j_A Putative ATP/GTP bindin 61.2 4.3 0.00015 34.2 2.6 38 469-506 87-126 (134)
281 2zr9_A Protein RECA, recombina 61.1 7.9 0.00027 39.1 5.0 37 262-306 61-97 (349)
282 1c4o_A DNA nucleotide excision 60.9 1.5E+02 0.0051 32.5 15.7 76 298-383 439-518 (664)
283 3tau_A Guanylate kinase, GMP k 60.7 5 0.00017 37.1 3.2 18 261-278 7-24 (208)
284 1kag_A SKI, shikimate kinase I 60.7 6.6 0.00022 34.7 3.9 25 261-287 3-27 (173)
285 1xp8_A RECA protein, recombina 60.6 8.2 0.00028 39.3 5.0 37 262-306 74-110 (366)
286 3iij_A Coilin-interacting nucl 60.4 3.5 0.00012 36.9 2.0 19 260-278 9-27 (180)
287 1u94_A RECA protein, recombina 60.3 8.1 0.00028 39.2 4.9 38 261-306 62-99 (356)
288 3foz_A TRNA delta(2)-isopenten 59.9 4.8 0.00016 39.9 3.0 15 264-278 12-26 (316)
289 3hr8_A Protein RECA; alpha and 59.5 7.7 0.00026 39.3 4.5 38 262-307 61-98 (356)
290 3exa_A TRNA delta(2)-isopenten 59.3 4.5 0.00016 40.2 2.7 16 263-278 4-19 (322)
291 1tf5_A Preprotein translocase 59.3 18 0.00063 40.7 7.8 70 469-544 123-209 (844)
292 2xxa_A Signal recognition part 59.2 24 0.00083 36.6 8.4 18 263-280 101-118 (433)
293 2pt7_A CAG-ALFA; ATPase, prote 59.2 5 0.00017 40.3 3.0 27 259-287 168-194 (330)
294 3lw7_A Adenylate kinase relate 58.9 4.3 0.00015 35.7 2.3 15 264-278 3-17 (179)
295 3dkp_A Probable ATP-dependent 58.8 8.9 0.00031 36.1 4.7 72 470-544 98-181 (245)
296 2x8a_A Nuclear valosin-contain 58.7 2.3 7.7E-05 41.5 0.3 60 223-287 5-67 (274)
297 3ney_A 55 kDa erythrocyte memb 58.5 5.5 0.00019 36.6 3.0 19 260-278 17-35 (197)
298 4akg_A Glutathione S-transfera 58.5 11 0.00038 48.4 6.5 48 232-280 890-941 (2695)
299 2w0m_A SSO2452; RECA, SSPF, un 58.3 10 0.00035 35.1 5.0 18 261-278 22-39 (235)
300 2ze6_A Isopentenyl transferase 58.1 5.4 0.00019 38.2 3.0 14 265-278 4-17 (253)
301 2qor_A Guanylate kinase; phosp 58.1 4.9 0.00017 36.9 2.6 20 259-278 9-28 (204)
302 3o8b_A HCV NS3 protease/helica 57.9 8.8 0.0003 42.4 4.9 67 297-377 395-461 (666)
303 2j41_A Guanylate kinase; GMP, 57.6 5.7 0.00019 36.3 2.9 19 260-278 4-22 (207)
304 4f4c_A Multidrug resistance pr 57.5 3.5 0.00012 49.7 1.8 43 370-412 1233-1275(1321)
305 3t15_A Ribulose bisphosphate c 57.5 7 0.00024 38.4 3.7 23 263-287 37-59 (293)
306 1lv7_A FTSH; alpha/beta domain 57.4 7 0.00024 37.2 3.7 17 262-278 45-61 (257)
307 1tue_A Replication protein E1; 57.1 5.7 0.0002 36.8 2.8 75 195-287 4-82 (212)
308 1kht_A Adenylate kinase; phosp 56.9 5 0.00017 36.0 2.4 18 261-278 2-19 (192)
309 1ex7_A Guanylate kinase; subst 56.4 5.5 0.00019 36.3 2.6 16 263-278 2-17 (186)
310 2ewv_A Twitching motility prot 56.1 6 0.0002 40.4 3.0 19 260-278 134-152 (372)
311 1zp6_A Hypothetical protein AT 56.1 5.9 0.0002 35.7 2.7 18 261-278 8-25 (191)
312 1gmx_A GLPE protein; transfera 56.0 9.1 0.00031 31.0 3.7 37 469-505 57-94 (108)
313 4a74_A DNA repair and recombin 55.8 13 0.00045 34.3 5.3 18 261-278 24-41 (231)
314 1tq1_A AT5G66040, senescence-a 55.4 14 0.00046 31.1 4.8 37 469-505 81-118 (129)
315 3b9p_A CG5977-PA, isoform A; A 55.2 6.3 0.00021 38.5 3.0 17 262-278 54-70 (297)
316 1cr0_A DNA primase/helicase; R 54.9 13 0.00046 36.1 5.4 18 261-278 34-51 (296)
317 1y63_A LMAJ004144AAA protein; 54.8 7.4 0.00025 35.0 3.2 18 261-278 9-26 (184)
318 3tr0_A Guanylate kinase, GMP k 54.8 7.3 0.00025 35.5 3.2 25 261-287 6-30 (205)
319 2xau_A PRE-mRNA-splicing facto 54.4 22 0.00077 40.0 7.7 75 298-378 303-393 (773)
320 1rj9_A FTSY, signal recognitio 54.3 12 0.0004 37.0 4.8 26 262-289 102-127 (304)
321 3nwj_A ATSK2; P loop, shikimat 54.3 8.9 0.0003 36.7 3.8 26 259-286 45-70 (250)
322 3crm_A TRNA delta(2)-isopenten 54.2 6.7 0.00023 39.1 3.0 15 264-278 7-21 (323)
323 3ice_A Transcription terminati 54.1 58 0.002 33.3 9.8 29 250-278 159-190 (422)
324 2oca_A DAR protein, ATP-depend 53.8 60 0.0021 34.1 10.8 75 299-382 348-426 (510)
325 1z6g_A Guanylate kinase; struc 53.5 8.7 0.0003 35.7 3.5 26 260-287 21-46 (218)
326 1ojl_A Transcriptional regulat 53.3 7.5 0.00026 38.4 3.2 18 261-278 24-41 (304)
327 3cm0_A Adenylate kinase; ATP-b 53.2 5.8 0.0002 35.6 2.1 18 261-278 3-20 (186)
328 2cvh_A DNA repair and recombin 53.2 15 0.0005 33.7 5.1 18 261-278 19-36 (220)
329 3a00_A Guanylate kinase, GMP k 52.8 8.7 0.0003 34.6 3.3 24 263-288 2-25 (186)
330 1f2t_A RAD50 ABC-ATPase; DNA d 52.7 9.6 0.00033 33.1 3.4 23 264-288 25-47 (149)
331 1j8m_F SRP54, signal recogniti 52.7 82 0.0028 30.7 10.6 17 262-278 98-114 (297)
332 3kta_A Chromosome segregation 52.4 9.4 0.00032 34.0 3.5 23 264-288 28-50 (182)
333 4gp7_A Metallophosphoesterase; 52.0 5.8 0.0002 35.3 1.9 18 261-278 8-25 (171)
334 2r8r_A Sensor protein; KDPD, P 51.4 15 0.00052 34.4 4.7 17 264-280 8-24 (228)
335 3d3q_A TRNA delta(2)-isopenten 51.4 8.1 0.00028 38.8 3.0 16 264-279 9-24 (340)
336 1znw_A Guanylate kinase, GMP k 51.3 9.9 0.00034 34.9 3.5 29 258-288 16-44 (207)
337 3kb2_A SPBC2 prophage-derived 51.2 8.6 0.00029 33.7 3.0 15 264-278 3-17 (173)
338 1s96_A Guanylate kinase, GMP k 50.8 9.2 0.00031 35.7 3.2 28 258-287 12-39 (219)
339 2yjt_D ATP-dependent RNA helic 56.2 3.3 0.00011 36.9 0.0 71 298-378 30-104 (170)
340 4eun_A Thermoresistant glucoki 50.6 9.3 0.00032 34.8 3.2 18 261-278 28-45 (200)
341 3rc3_A ATP-dependent RNA helic 50.6 28 0.00097 38.5 7.6 74 299-383 321-400 (677)
342 1ly1_A Polynucleotide kinase; 50.5 9 0.00031 33.9 3.0 15 264-278 4-18 (181)
343 2c9o_A RUVB-like 1; hexameric 50.4 8.2 0.00028 40.6 3.1 17 262-278 63-79 (456)
344 2fsf_A Preprotein translocase 50.2 23 0.00077 40.0 6.6 70 469-544 114-200 (853)
345 4a2q_A RIG-I, retinoic acid in 50.2 21 0.0007 40.5 6.6 71 470-544 296-377 (797)
346 1um8_A ATP-dependent CLP prote 50.2 9.6 0.00033 38.7 3.5 24 262-287 72-95 (376)
347 3eph_A TRNA isopentenyltransfe 49.7 8.8 0.0003 39.5 3.0 14 265-278 5-18 (409)
348 1ye8_A Protein THEP1, hypothet 49.5 11 0.00038 33.8 3.4 23 264-288 2-24 (178)
349 3nhv_A BH2092 protein; alpha-b 49.5 14 0.00047 31.9 3.9 37 469-505 71-109 (144)
350 1iy2_A ATP-dependent metallopr 49.5 10 0.00035 36.7 3.4 23 263-287 74-96 (278)
351 2c95_A Adenylate kinase 1; tra 49.1 11 0.00039 33.8 3.5 20 259-278 6-25 (196)
352 4f4c_A Multidrug resistance pr 49.1 10 0.00034 45.8 3.8 42 370-411 570-611 (1321)
353 3c8u_A Fructokinase; YP_612366 49.0 9 0.00031 35.2 2.8 26 261-288 21-46 (208)
354 3hix_A ALR3790 protein; rhodan 48.9 13 0.00043 30.0 3.4 37 469-505 51-88 (106)
355 3tbk_A RIG-I helicase domain; 48.8 14 0.00048 39.3 4.8 71 470-544 52-133 (555)
356 1knq_A Gluconate kinase; ALFA/ 48.8 8.8 0.0003 33.9 2.6 17 262-278 8-24 (175)
357 3vkg_A Dynein heavy chain, cyt 48.7 27 0.00092 45.6 7.7 55 232-289 873-931 (3245)
358 2r2a_A Uncharacterized protein 48.6 11 0.00038 34.6 3.3 16 264-279 7-22 (199)
359 4a2p_A RIG-I, retinoic acid in 48.0 18 0.00062 38.6 5.4 71 470-544 55-136 (556)
360 3b9q_A Chloroplast SRP recepto 47.5 13 0.00043 36.8 3.7 26 261-288 99-124 (302)
361 2fsx_A RV0390, COG0607: rhodan 47.2 21 0.00072 30.7 4.8 37 469-505 79-116 (148)
362 3nwn_A Kinesin-like protein KI 47.1 15 0.00051 37.2 4.2 24 255-278 96-121 (359)
363 2i3b_A HCR-ntpase, human cance 47.0 14 0.00049 33.5 3.8 41 370-413 103-145 (189)
364 1xjc_A MOBB protein homolog; s 46.9 21 0.00071 31.8 4.7 15 264-278 6-20 (169)
365 2wv9_A Flavivirin protease NS2 46.7 15 0.00053 40.6 4.7 68 298-377 410-478 (673)
366 1in4_A RUVB, holliday junction 46.7 13 0.00043 37.2 3.7 23 263-287 52-74 (334)
367 2ius_A DNA translocase FTSK; n 46.7 23 0.00078 37.7 5.8 18 261-278 166-183 (512)
368 1q57_A DNA primase/helicase; d 46.4 16 0.00056 38.8 4.7 39 261-306 241-279 (503)
369 4fcw_A Chaperone protein CLPB; 46.3 13 0.00043 36.4 3.6 16 263-278 48-63 (311)
370 3d8b_A Fidgetin-like protein 1 46.3 10 0.00035 38.4 2.9 17 262-278 117-133 (357)
371 3uie_A Adenylyl-sulfate kinase 46.3 10 0.00035 34.5 2.7 18 261-278 24-41 (200)
372 2v9p_A Replication protein E1; 46.3 13 0.00044 36.7 3.5 26 261-288 125-150 (305)
373 2bdt_A BH3686; alpha-beta prot 46.1 12 0.0004 33.7 3.0 16 263-278 3-18 (189)
374 4a2w_A RIG-I, retinoic acid in 45.9 33 0.0011 39.7 7.4 71 470-544 296-377 (936)
375 2yvu_A Probable adenylyl-sulfa 45.9 15 0.0005 32.9 3.7 18 261-278 12-29 (186)
376 1nij_A Hypothetical protein YJ 45.9 15 0.00052 36.4 4.1 14 265-278 7-20 (318)
377 3ipz_A Monothiol glutaredoxin- 45.7 45 0.0015 26.9 6.3 49 467-515 14-68 (109)
378 3t61_A Gluconokinase; PSI-biol 45.7 12 0.0004 34.1 3.0 16 263-278 19-34 (202)
379 2jlq_A Serine protease subunit 45.5 16 0.00056 38.1 4.5 68 298-377 188-256 (451)
380 2v54_A DTMP kinase, thymidylat 45.5 9.5 0.00033 34.6 2.3 18 261-278 3-20 (204)
381 2rhm_A Putative kinase; P-loop 45.5 12 0.00042 33.4 3.1 17 262-278 5-21 (193)
382 1zuh_A Shikimate kinase; alpha 45.4 12 0.00041 32.8 2.9 16 263-278 8-23 (168)
383 1bg2_A Kinesin; motor protein, 45.3 16 0.00055 36.4 4.1 24 255-278 69-94 (325)
384 1qxn_A SUD, sulfide dehydrogen 45.1 18 0.00061 30.8 3.9 38 468-505 80-118 (137)
385 2r62_A Cell division protease 45.1 6.2 0.00021 37.9 1.0 17 262-278 44-60 (268)
386 1v8k_A Kinesin-like protein KI 45.0 16 0.00055 37.6 4.1 24 255-278 146-171 (410)
387 3p32_A Probable GTPase RV1496/ 44.9 1.5E+02 0.0052 29.4 11.5 15 264-278 81-95 (355)
388 4gl2_A Interferon-induced heli 44.8 4.3 0.00015 45.3 -0.3 70 471-544 57-142 (699)
389 1m7g_A Adenylylsulfate kinase; 44.7 17 0.00057 33.4 3.9 30 248-278 12-41 (211)
390 1tev_A UMP-CMP kinase; ploop, 44.6 11 0.00037 33.8 2.6 17 262-278 3-19 (196)
391 4etp_A Kinesin-like protein KA 44.6 17 0.00058 37.5 4.2 24 255-278 132-157 (403)
392 3dc4_A Kinesin-like protein NO 44.4 15 0.00052 36.9 3.8 24 255-278 86-111 (344)
393 1ak2_A Adenylate kinase isoenz 44.1 12 0.00042 35.0 2.9 18 261-278 15-32 (233)
394 3asz_A Uridine kinase; cytidin 44.0 14 0.00049 33.7 3.3 24 262-287 6-29 (211)
395 1t5c_A CENP-E protein, centrom 44.0 18 0.00061 36.5 4.2 24 255-278 69-94 (349)
396 2whx_A Serine protease/ntpase/ 43.8 30 0.001 37.9 6.3 68 298-377 355-423 (618)
397 1nks_A Adenylate kinase; therm 43.7 13 0.00046 33.1 3.1 15 264-278 3-17 (194)
398 1zak_A Adenylate kinase; ATP:A 43.5 16 0.00053 33.8 3.6 17 262-278 5-21 (222)
399 1via_A Shikimate kinase; struc 43.5 15 0.0005 32.5 3.2 16 263-278 5-20 (175)
400 3b6u_A Kinesin-like protein KI 43.5 18 0.00063 36.7 4.2 24 255-278 93-118 (372)
401 3gbj_A KIF13B protein; kinesin 43.4 18 0.00062 36.5 4.2 24 255-278 84-109 (354)
402 2plr_A DTMP kinase, probable t 43.3 11 0.00038 34.3 2.4 18 261-278 3-20 (213)
403 2h58_A Kinesin-like protein KI 43.3 18 0.00061 36.1 4.1 25 254-278 71-97 (330)
404 1gvn_B Zeta; postsegregational 43.3 9.2 0.00032 37.4 2.0 16 263-278 34-49 (287)
405 3nzo_A UDP-N-acetylglucosamine 43.2 1.7E+02 0.0058 29.6 11.8 90 253-355 26-119 (399)
406 2nr8_A Kinesin-like protein KI 43.2 19 0.00064 36.4 4.2 24 255-278 95-120 (358)
407 2y65_A Kinesin, kinesin heavy 43.0 18 0.00062 36.6 4.1 24 255-278 76-101 (365)
408 3qf7_A RAD50; ABC-ATPase, ATPa 42.8 14 0.00048 37.5 3.3 16 264-279 25-40 (365)
409 2z0m_A 337AA long hypothetical 42.8 57 0.002 31.7 7.9 70 470-544 56-135 (337)
410 4a14_A Kinesin, kinesin-like p 42.7 18 0.00063 36.3 4.1 24 255-278 75-100 (344)
411 2bwj_A Adenylate kinase 5; pho 42.7 15 0.00053 32.9 3.3 18 261-278 11-28 (199)
412 2vvg_A Kinesin-2; motor protei 42.7 19 0.00064 36.3 4.1 24 255-278 81-106 (350)
413 2k0z_A Uncharacterized protein 42.7 28 0.00095 28.1 4.6 37 469-505 55-91 (110)
414 3qks_A DNA double-strand break 42.6 16 0.00055 33.5 3.4 24 264-289 25-48 (203)
415 2og2_A Putative signal recogni 42.6 16 0.00055 37.0 3.7 26 261-288 156-181 (359)
416 3tqc_A Pantothenate kinase; bi 42.5 41 0.0014 33.3 6.6 24 264-289 94-117 (321)
417 1qf9_A UMP/CMP kinase, protein 42.5 15 0.0005 32.8 3.1 15 264-278 8-22 (194)
418 1g8p_A Magnesium-chelatase 38 42.3 12 0.0004 37.4 2.6 26 261-288 44-69 (350)
419 3zyw_A Glutaredoxin-3; metal b 42.3 34 0.0012 27.8 5.1 57 468-524 13-75 (111)
420 1goj_A Kinesin, kinesin heavy 42.2 18 0.00061 36.6 3.9 24 255-278 72-97 (355)
421 3mm4_A Histidine kinase homolo 42.2 1.9E+02 0.0064 25.8 11.7 127 260-413 18-161 (206)
422 1zd8_A GTP:AMP phosphotransfer 42.0 15 0.0005 34.2 3.1 17 262-278 7-23 (227)
423 3lnc_A Guanylate kinase, GMP k 41.9 11 0.00036 35.4 2.1 18 261-278 26-43 (231)
424 3sr0_A Adenylate kinase; phosp 41.9 15 0.0005 33.9 3.0 15 265-279 3-17 (206)
425 1aky_A Adenylate kinase; ATP:A 41.8 15 0.00053 33.8 3.2 17 262-278 4-20 (220)
426 1x88_A Kinesin-like protein KI 41.8 18 0.00063 36.5 3.9 24 255-278 80-105 (359)
427 3k1j_A LON protease, ATP-depen 41.6 22 0.00074 38.9 4.8 30 257-288 55-84 (604)
428 2zfi_A Kinesin-like protein KI 41.5 20 0.00068 36.4 4.1 24 255-278 81-106 (366)
429 3fb4_A Adenylate kinase; psych 41.3 15 0.00051 33.7 3.0 15 264-278 2-16 (216)
430 2iut_A DNA translocase FTSK; n 41.3 31 0.0011 37.2 5.7 25 262-287 214-238 (574)
431 2iyv_A Shikimate kinase, SK; t 41.2 18 0.00061 32.2 3.4 16 263-278 3-18 (184)
432 3lre_A Kinesin-like protein KI 41.0 19 0.00065 36.4 3.9 24 255-278 97-122 (355)
433 1zu4_A FTSY; GTPase, signal re 41.0 18 0.0006 36.0 3.6 18 261-278 104-121 (320)
434 2jtq_A Phage shock protein E; 40.8 22 0.00077 27.0 3.5 36 469-505 40-76 (85)
435 1nkt_A Preprotein translocase 40.7 38 0.0013 38.4 6.5 70 469-544 151-237 (922)
436 2wbe_C Bipolar kinesin KRP-130 40.5 19 0.00065 36.6 3.8 24 255-278 92-117 (373)
437 3cob_A Kinesin heavy chain-lik 40.3 18 0.00061 36.7 3.6 24 255-278 71-96 (369)
438 1cke_A CK, MSSA, protein (cyti 40.3 16 0.00053 33.8 3.0 16 263-278 6-21 (227)
439 3dmn_A Putative DNA helicase; 40.3 73 0.0025 28.1 7.4 81 454-549 44-125 (174)
440 3dl0_A Adenylate kinase; phosp 40.3 16 0.00054 33.6 3.0 15 264-278 2-16 (216)
441 3auy_A DNA double-strand break 40.2 17 0.00059 36.8 3.5 21 264-286 27-47 (371)
442 2jaq_A Deoxyguanosine kinase; 40.1 16 0.00054 33.0 3.0 22 264-287 2-23 (205)
443 1htw_A HI0065; nucleotide-bind 40.1 17 0.0006 31.8 3.1 27 260-288 31-57 (158)
444 3u06_A Protein claret segregat 40.0 19 0.00065 37.2 3.7 25 254-278 129-155 (412)
445 3f9v_A Minichromosome maintena 39.9 13 0.00043 40.7 2.5 15 264-278 329-343 (595)
446 1e6c_A Shikimate kinase; phosp 39.9 16 0.00056 31.9 2.9 16 263-278 3-18 (173)
447 3lda_A DNA repair protein RAD5 39.8 35 0.0012 35.0 5.8 24 255-278 166-194 (400)
448 2pez_A Bifunctional 3'-phospho 39.7 15 0.00052 32.6 2.7 18 261-278 4-21 (179)
449 3t0q_A AGR253WP; kinesin, alph 39.6 16 0.00055 36.8 3.1 24 255-278 77-102 (349)
450 2f1r_A Molybdopterin-guanine d 39.6 12 0.00041 33.4 1.9 15 264-278 4-18 (171)
451 1g41_A Heat shock protein HSLU 39.6 20 0.00069 37.3 3.9 25 262-288 50-74 (444)
452 2heh_A KIF2C protein; kinesin, 39.4 20 0.00069 36.6 3.8 24 255-278 126-151 (387)
453 3io5_A Recombination and repai 39.4 35 0.0012 33.9 5.3 41 264-310 30-70 (333)
454 3tif_A Uncharacterized ABC tra 39.3 14 0.00048 34.8 2.5 24 261-286 30-53 (235)
455 1ry6_A Internal kinesin; kines 39.3 20 0.00068 36.3 3.7 18 261-278 82-101 (360)
456 2yan_A Glutaredoxin-3; oxidore 39.0 58 0.002 25.8 6.0 55 470-524 16-76 (105)
457 2hhg_A Hypothetical protein RP 38.9 18 0.0006 30.7 2.9 37 469-505 85-122 (139)
458 2cdn_A Adenylate kinase; phosp 38.8 17 0.00059 32.9 3.0 16 263-278 21-36 (201)
459 3umf_A Adenylate kinase; rossm 38.8 17 0.00058 33.9 2.9 18 262-279 29-46 (217)
460 2qt1_A Nicotinamide riboside k 38.5 18 0.00062 32.9 3.1 18 261-278 20-37 (207)
461 3pxg_A Negative regulator of g 38.4 20 0.0007 37.7 3.8 18 261-278 200-217 (468)
462 2if2_A Dephospho-COA kinase; a 38.4 18 0.00062 32.7 3.1 15 264-278 3-17 (204)
463 1ukz_A Uridylate kinase; trans 38.4 18 0.00061 32.8 3.0 15 264-278 17-31 (203)
464 2ipc_A Preprotein translocase 38.3 40 0.0014 38.4 6.1 54 469-528 119-176 (997)
465 2wwf_A Thymidilate kinase, put 38.2 19 0.00066 32.7 3.3 18 261-278 9-26 (212)
466 2fz4_A DNA repair protein RAD2 38.1 49 0.0017 30.9 6.2 62 451-527 116-178 (237)
467 1e4v_A Adenylate kinase; trans 37.9 19 0.00064 33.1 3.1 15 264-278 2-16 (214)
468 1jjv_A Dephospho-COA kinase; P 37.9 18 0.00062 32.9 3.0 14 265-278 5-18 (206)
469 2va8_A SSO2462, SKI2-type heli 37.7 1.3E+02 0.0043 33.3 10.5 76 298-379 252-363 (715)
470 1f9v_A Kinesin-like protein KA 37.7 17 0.00059 36.6 2.9 24 255-278 76-101 (347)
471 3be4_A Adenylate kinase; malar 37.5 20 0.00069 33.0 3.3 17 262-278 5-21 (217)
472 2owm_A Nckin3-434, related to 37.5 24 0.00082 36.8 4.1 24 255-278 128-153 (443)
473 2bbw_A Adenylate kinase 4, AK4 37.4 18 0.00062 34.1 3.0 18 261-278 26-43 (246)
474 2z0h_A DTMP kinase, thymidylat 37.2 15 0.00052 32.9 2.3 14 265-278 3-16 (197)
475 3a4m_A L-seryl-tRNA(SEC) kinas 37.1 15 0.00051 35.2 2.3 16 263-278 5-20 (260)
476 2pt5_A Shikimate kinase, SK; a 37.0 19 0.00066 31.3 2.9 15 264-278 2-16 (168)
477 3l9o_A ATP-dependent RNA helic 36.7 17 0.00057 42.9 3.1 65 469-544 226-296 (1108)
478 1np6_A Molybdopterin-guanine d 36.7 24 0.00082 31.5 3.5 16 263-278 7-22 (174)
479 1nn5_A Similar to deoxythymidy 36.6 22 0.00074 32.4 3.3 18 261-278 8-25 (215)
480 1z5z_A Helicase of the SNF2/RA 36.5 1.2E+02 0.0041 28.9 8.8 92 270-378 92-189 (271)
481 3tqf_A HPR(Ser) kinase; transf 36.5 19 0.00064 32.3 2.6 18 261-278 15-32 (181)
482 3bfn_A Kinesin-like protein KI 36.5 19 0.00066 36.7 3.1 23 256-278 91-115 (388)
483 1uf9_A TT1252 protein; P-loop, 36.3 20 0.0007 32.2 3.1 15 264-278 10-24 (203)
484 2pbr_A DTMP kinase, thymidylat 36.1 20 0.00069 31.9 3.0 14 265-278 3-16 (195)
485 4akg_A Glutathione S-transfera 35.8 15 0.00052 47.2 2.7 20 259-278 1264-1283(2695)
486 1sgw_A Putative ABC transporte 35.7 19 0.00066 33.4 2.8 18 261-278 34-51 (214)
487 2vli_A Antibiotic resistance p 35.5 12 0.00041 33.2 1.3 17 262-278 5-21 (183)
488 3ilm_A ALR3790 protein; rhodan 35.5 31 0.0011 29.4 3.9 37 469-505 55-92 (141)
489 2cbz_A Multidrug resistance-as 35.3 18 0.00061 34.2 2.5 18 261-278 30-47 (237)
490 2z83_A Helicase/nucleoside tri 35.2 20 0.00069 37.5 3.2 54 298-356 190-244 (459)
491 4e22_A Cytidylate kinase; P-lo 35.1 22 0.00075 33.8 3.1 18 261-278 26-43 (252)
492 3czc_A RMPB; alpha/beta sandwi 35.1 51 0.0018 26.7 5.0 57 298-357 18-76 (110)
493 2xb4_A Adenylate kinase; ATP-b 35.0 21 0.00072 33.1 3.0 14 265-278 3-16 (223)
494 3fkq_A NTRC-like two-domain pr 34.2 57 0.002 32.9 6.3 25 355-380 243-267 (373)
495 3bs4_A Uncharacterized protein 33.8 31 0.0011 33.0 4.0 51 262-321 21-71 (260)
496 2pcj_A ABC transporter, lipopr 33.8 20 0.00068 33.5 2.5 18 261-278 29-46 (224)
497 3d1p_A Putative thiosulfate su 33.7 23 0.00079 30.0 2.8 37 469-505 90-127 (139)
498 2pze_A Cystic fibrosis transme 33.7 20 0.00067 33.6 2.5 18 261-278 33-50 (229)
499 1wik_A Thioredoxin-like protei 33.6 93 0.0032 24.8 6.4 55 470-524 14-74 (109)
500 1rz3_A Hypothetical protein rb 33.5 24 0.00084 32.0 3.1 16 263-278 23-38 (201)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.9e-67 Score=567.47 Aligned_cols=391 Identities=41% Similarity=0.685 Sum_probs=361.8
Q ss_pred HcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhc
Q 006800 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 210 ~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
...+.+.|.+.|.|+.+|.+++|++.+++.|.+.||.+|+|+|.++||.+++|+|++++|+||||||++|++|++.+++.
T Consensus 41 ~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp GSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccc
Q 006800 290 QPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT 369 (630)
Q Consensus 290 ~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~ 369 (630)
.+......++++|||+|||+||.|+++.+.+++...++++.+++||.....+...+..+++|+|+||++|.+++.+....
T Consensus 121 ~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 200 (434)
T 2db3_A 121 DPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFIT 200 (434)
T ss_dssp SCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCC
T ss_pred cccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcc
Confidence 65434456889999999999999999999999988889999999999999888888899999999999999999988888
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhc--CCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEE
Q 006800 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV 447 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l--~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~ 447 (630)
+.++++|||||||+|++++|...+..++..+ ++.+|+++||||+++.+..++..++.++..+.++........+.+.+
T Consensus 201 l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~ 280 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTI 280 (434)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEE
T ss_pred cccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEE
Confidence 9999999999999999999999999999885 67899999999999999999999999999999988777788888888
Q ss_pred EEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEc
Q 006800 448 HVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (630)
Q Consensus 448 ~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT 527 (630)
..+. ...|...|...+... ..++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||
T Consensus 281 ~~~~-~~~k~~~l~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 357 (434)
T 2db3_A 281 YEVN-KYAKRSKLIEILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT 357 (434)
T ss_dssp EECC-GGGHHHHHHHHHHHC--CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC
T ss_pred EEeC-cHHHHHHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 7775 456888888887764 3459999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEecc-ccHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006800 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIAAGQNVSMELMDL 604 (630)
Q Consensus 528 ~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~-~d~~~~~~l~~~l~~~~~~vp~~L~~l 604 (630)
+++++|+|+|++++||+||+|.++..|+||+||+||.| +.|.+++|+++ .+...+.++++.|..+++.||++|.+|
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g-~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVG-NNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTT-CCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCC-CCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 99999999999999999999999999999999999999 67999999994 578889999999999999999998764
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.4e-60 Score=511.43 Aligned_cols=394 Identities=41% Similarity=0.694 Sum_probs=355.4
Q ss_pred ceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCc
Q 006800 213 IRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE 292 (630)
Q Consensus 213 ~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~ 292 (630)
+.+.|..+|.|+.+|.++++++.+++.|...||..|+|+|.+++|.+++|+++++++|||+|||++|++|++.++.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 55678889999999999999999999999999999999999999999999999999999999999999999998865421
Q ss_pred c-------------cccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHH
Q 006800 293 L-------------QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL 359 (630)
Q Consensus 293 ~-------------~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L 359 (630)
. ....++++|||+||++||.|+++.+.+++...++++..++||.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 122357899999999999999999999998889999999999999888888888999999999999
Q ss_pred HHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc--CC--CCcEEEEeecccHHHHHHHHHHcCCCeEEEEcc
Q 006800 360 IDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (630)
Q Consensus 360 ~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l--~~--~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 435 (630)
..++......+..+++|||||||++.+++|...+..++... .+ .+|+++||||+++.+..++..++.++..+.+..
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 99998887788999999999999999999999999998853 22 679999999999999999999999998888877
Q ss_pred cccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Q 006800 436 VGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQK 515 (630)
Q Consensus 436 ~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~ 515 (630)
.......+.+.+..+. ...+...+...+......+++||||+++..++.++..|...++.+..+||++++.+|..+++.
T Consensus 243 ~~~~~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 321 (417)
T 2i4i_A 243 VGSTSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 321 (417)
T ss_dssp ---CCSSEEEEEEECC-GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCccCceEEEEEec-cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHH
Confidence 6666777788777664 456788888888776567789999999999999999999999999999999999999999999
Q ss_pred hhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCC
Q 006800 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQ 595 (630)
Q Consensus 516 F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~ 595 (630)
|++|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| +.|.+++|+++.+...+.++++.+..+++
T Consensus 322 f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 322 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG-NLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp HHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC---CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCC-CCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999 57999999999999999999999999999
Q ss_pred CCCHHHHHHHHhh
Q 006800 596 NVSMELMDLAMKV 608 (630)
Q Consensus 596 ~vp~~L~~la~~~ 608 (630)
.+|.+|..++...
T Consensus 401 ~~~~~l~~~~~~~ 413 (417)
T 2i4i_A 401 EVPSWLENMAYEH 413 (417)
T ss_dssp CCCHHHHHHHTCS
T ss_pred cCCHHHHHHHHhh
Confidence 9999999998653
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.1e-57 Score=486.19 Aligned_cols=372 Identities=31% Similarity=0.540 Sum_probs=339.7
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCe
Q 006800 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (630)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 300 (630)
+.+..+|.++++++.+++.|.+.||.+|+|+|.++++.+++|+++++++|||+|||++|++|++.++.. ...+++
T Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-----~~~~~~ 107 (410)
T 2j0s_A 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-----QVRETQ 107 (410)
T ss_dssp CCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-----TSCSCC
T ss_pred ccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-----ccCCce
Confidence 456789999999999999999999999999999999999999999999999999999999999987632 134678
Q ss_pred EEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecc
Q 006800 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380 (630)
Q Consensus 301 vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDE 380 (630)
+|||+||++|+.||++.+.++....++.+..++||.....+...+..+++|+|+||++|.+++......+..+++|||||
T Consensus 108 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDE 187 (410)
T 2j0s_A 108 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 187 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEcc
Confidence 99999999999999999999998889999999999999888888888999999999999999988878888999999999
Q ss_pred hhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHH
Q 006800 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (630)
Q Consensus 381 ah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l 460 (630)
||++.+++|...+..++..+++..|++++|||+++.+..++..++.+|..+.+.........+.+.+..+.....+...+
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 267 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL 267 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHH
Confidence 99999999999999999999999999999999999988888899999988877766667778888888777666677777
Q ss_pred HHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCcc
Q 006800 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (630)
Q Consensus 461 ~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~ 540 (630)
...+... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 268 ~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 346 (410)
T 2j0s_A 268 CDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVS 346 (410)
T ss_dssp HHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEE
T ss_pred HHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCC
Confidence 7776554 356899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCH
Q 006800 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSM 599 (630)
Q Consensus 541 ~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~ 599 (630)
+||+|++|+++..|+||+||+||.| +.|.+++|+++.+...+.++.+.+...-..+|.
T Consensus 347 ~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 347 LIINYDLPNNRELYIHRIGRSGRYG-RKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSGGG-CCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred EEEEECCCCCHHHHHHhcccccCCC-CceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 9999999999999999999999999 679999999999999999998888666555553
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.2e-56 Score=477.76 Aligned_cols=379 Identities=31% Similarity=0.530 Sum_probs=331.1
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCC
Q 006800 219 DVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298 (630)
Q Consensus 219 ~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 298 (630)
..+..+.+|.++++++.+++.|.+.|+..|+|+|.++++.+++|+++++++|||+|||++|++|++.++... ..+
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~ 108 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKA 108 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCS
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCc
Confidence 446677899999999999999999999999999999999999999999999999999999999999886432 246
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHccccccCceeEEE
Q 006800 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (630)
Q Consensus 299 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lV 377 (630)
+++|||+||++|+.|+++.+.+++...++.+..++||.........+. .+++|+|+||++|.+.+......+..+++||
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEE
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEE
Confidence 789999999999999999999999888999999999998888877776 6789999999999999988888888999999
Q ss_pred ecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccH
Q 006800 378 LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457 (630)
Q Consensus 378 vDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~ 457 (630)
|||||++.+++|...+..++..+++..|+++||||+++.+..++..++.+|..+...........+.+.+..+.....+.
T Consensus 189 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (414)
T 3eiq_A 189 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL 268 (414)
T ss_dssp ECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHH
T ss_pred EECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHH
Confidence 99999999999999999999999999999999999999999999999999988887777777778888888887776788
Q ss_pred HHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCC
Q 006800 458 PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (630)
Q Consensus 458 ~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~ 537 (630)
..+...+... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 269 ~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 347 (414)
T 3eiq_A 269 DTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 347 (414)
T ss_dssp HHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGG
T ss_pred HHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCcc
Confidence 8888877665 457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006800 538 SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDL 604 (630)
Q Consensus 538 ~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L~~l 604 (630)
++++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+......+|..+.++
T Consensus 348 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 348 QVSLVINYDLPTNRENYIHRIGRGGRFG-RKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp GCSCEEESSCCSSTHHHHHHSCCC--------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred CCCEEEEeCCCCCHHHhhhhcCcccCCC-CCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 9999999999999999999999999999 67999999999999999999999988888888877664
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3e-54 Score=461.43 Aligned_cols=372 Identities=29% Similarity=0.502 Sum_probs=327.1
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCe
Q 006800 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (630)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 300 (630)
+.+..+|+++++++.+++.|.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++.++... ..+++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 91 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQ 91 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCcc
Confidence 3456789999999999999999999999999999999999999999999999999999999999886432 24678
Q ss_pred EEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecc
Q 006800 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380 (630)
Q Consensus 301 vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDE 380 (630)
+||++||++|+.|+++.+.+++...++.+..++|+.....+...+..+++|+|+||++|..++......+.++++|||||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999998889999999999988887777778899999999999999988777789999999999
Q ss_pred hhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHH
Q 006800 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (630)
Q Consensus 381 ah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l 460 (630)
||++.+.+|...+..++..+++..|+++||||++..+..++..++.+|..+.... ......+.+.+..+. ...|...+
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~k~~~l 249 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVE-ERQKLHCL 249 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECC-GGGHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEec-hhhHHHHH
Confidence 9999988888999999999999999999999999999999999999887665432 233445566655553 44666666
Q ss_pred HHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCcc
Q 006800 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (630)
Q Consensus 461 ~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~ 540 (630)
...+... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 250 ~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~ 328 (400)
T 1s2m_A 250 NTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN 328 (400)
T ss_dssp HHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEE
T ss_pred HHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCC
Confidence 6666543 457999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCHHH
Q 006800 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMEL 601 (630)
Q Consensus 541 ~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L 601 (630)
+||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+.++.+.+...-+++|..+
T Consensus 329 ~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 329 VVINFDFPKTAETYLHRIGRSGRFG-HLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp EEEESSCCSSHHHHHHHHCBSSCTT-CCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred EEEEeCCCCCHHHHHHhcchhcCCC-CCceEEEEeccchHHHHHHHHHHhCCCcccccccc
Confidence 9999999999999999999999999 67999999999999999988888766555666543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.4e-53 Score=454.52 Aligned_cols=368 Identities=28% Similarity=0.479 Sum_probs=320.3
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEE
Q 006800 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (630)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil 304 (630)
.+|+++++++.+++.|...||..|+|+|.++++.++.|+++++++|||+|||++|++|++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 579999999999999999999999999999999999999999999999999999999998876432 236689999
Q ss_pred cccHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 006800 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (630)
Q Consensus 305 ~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (630)
+||++|+.||++.+.++.... ++++..++|+.........+..+ ++|+|+||++|..++......+..+++|||||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999998765 78999999998887776666654 7999999999999998877788999999999999
Q ss_pred hhhcC-CcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEccccc-ccccceEEEEEcCCccccHHHH
Q 006800 383 RMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWL 460 (630)
Q Consensus 383 ~~~~~-~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~-~~~~i~q~~~~~~~~~~k~~~l 460 (630)
++.++ ++...+..++..+++..|++++|||+++.+..++..++.+|..+....... ....+.+.+..+. ...+...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 241 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK-DNEKNRKL 241 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC-GGGHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcC-chhHHHHH
Confidence 99874 678888889998888999999999999999999999999998877654432 3345556555553 45677777
Q ss_pred HHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCcc
Q 006800 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (630)
Q Consensus 461 ~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~ 540 (630)
...+... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 242 ~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 242 FDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 7777654 567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEecccc-HHHHHHHHHHHHHcCCCCCHH
Q 006800 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGELVNSLIAAGQNVSME 600 (630)
Q Consensus 541 ~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d-~~~~~~l~~~l~~~~~~vp~~ 600 (630)
+||+|++|+++..|+||+||+||.| +.|.+++|+++.+ ...+..+.+.+...-.++|.+
T Consensus 321 ~Vi~~~~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 321 IAFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEESSCCSSHHHHHHHHCBCSSSC-CCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEEeCCCCCHHHHHHhcccccCCC-CceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999999 6799999999764 455666666665555555544
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=5.5e-55 Score=465.74 Aligned_cols=377 Identities=30% Similarity=0.519 Sum_probs=191.7
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCC
Q 006800 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (630)
Q Consensus 220 ~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (630)
...+..+|+++++++.+++.+...||..|+|+|.++++.+++|+++++++|||+|||++|++|++.++... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 45677899999999999999999999999999999999999999999999999999999999999886432 3467
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEec
Q 006800 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (630)
Q Consensus 300 ~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvD 379 (630)
++||++||++|+.|+++.+.+++...++++..++|+.........+. +++|+|+||++|...+......+.++++||+|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 89999999999999999999999888999999999988776655554 58999999999999998877778899999999
Q ss_pred chhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHH
Q 006800 380 EADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459 (630)
Q Consensus 380 Eah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~ 459 (630)
|||++.++++...+..++..+++..|++++|||+++.+..+...++.+|..+...........+.+.+..+.....+...
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------
T ss_pred ChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999888766555555666666655544446666
Q ss_pred HHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCc
Q 006800 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (630)
Q Consensus 460 l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v 539 (630)
+...+... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 250 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~ 328 (394)
T 1fuu_A 250 LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccC
Confidence 66555443 45799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006800 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDL 604 (630)
Q Consensus 540 ~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L~~l 604 (630)
++||+|++|+++..|+||+||+||.| +.|.+++|+++.+...+..+.+.+...-..+|..+.++
T Consensus 329 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (394)
T 1fuu_A 329 SLVINYDLPANKENYIHRIGRGGRFG-RKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL 392 (394)
T ss_dssp -----------------------------------------------------------------
T ss_pred CEEEEeCCCCCHHHHHHHcCcccCCC-CCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhh
Confidence 99999999999999999999999999 67999999999999999999888877777777665543
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.6e-52 Score=446.56 Aligned_cols=358 Identities=30% Similarity=0.524 Sum_probs=315.6
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCC
Q 006800 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (630)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (630)
+...+|+++++++.+++.|.+.||..|+|+|.++++.++++ +++++++|||+|||++|++|++.++... ..++
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~ 76 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASP 76 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSC
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCc
Confidence 45689999999999999999999999999999999999998 9999999999999999999999886432 3467
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEec
Q 006800 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (630)
Q Consensus 300 ~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvD 379 (630)
++|||+||++|+.|+++.+.++....++.+...+++...... ..+++|+|+||++|...+......+.++++||||
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 152 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLD 152 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEE
Confidence 899999999999999999999988888888888877544322 2368999999999999998887788999999999
Q ss_pred chhhhhc-CCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHH
Q 006800 380 EADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (630)
Q Consensus 380 Eah~~~~-~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (630)
|||++.+ .++...+..+...+++..|++++|||+++.+..++..++.++..+...........+.+.+..+.....+..
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHH
Confidence 9999987 678889999999999999999999999999999999999999888776666666777787777766666777
Q ss_pred HHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCC
Q 006800 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (630)
Q Consensus 459 ~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~ 538 (630)
.+...+... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 233 ~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 233 VLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 776666544 5679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCC------CHHHHHHHhhhcccCCCCCeEEEEEeccccH-HHHHHHHHHH
Q 006800 539 IKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA-RFAGELVNSL 590 (630)
Q Consensus 539 v~~VI~~~~p~------~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~-~~~~~l~~~l 590 (630)
+++||+|++|+ ++..|+||+||+||.| +.|.+++|++..+. ..+..+.+.+
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGRFG-RKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTT-CCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccccCC-CCceEEEEEechHHHHHHHHHHHHh
Confidence 99999999999 9999999999999999 67999999987654 4445554444
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.6e-52 Score=439.28 Aligned_cols=354 Identities=35% Similarity=0.616 Sum_probs=317.8
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEE
Q 006800 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (630)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g-~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (630)
..+|.++++++.+++.|.+.||..|+|+|.++++.++++ +++++.+|||+|||++|++|++..+.. ..++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------~~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------cCCCcEE
Confidence 457999999999999999999999999999999999988 799999999999999999999887643 2477899
Q ss_pred EEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 006800 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (630)
Q Consensus 303 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (630)
|++||++|+.|+++.+.++....++.+..++|+.........+. +++|+|+||++|...+......+.++++||+||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998877889999999988877766665 69999999999999998877778999999999999
Q ss_pred hhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHH
Q 006800 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (630)
Q Consensus 383 ~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~ 462 (630)
++.++++...+..++..+++..+++++|||+++.+..++..++.++..+.... ...+.+.+..+ ....+...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~l~~ 232 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEV-NENERFEALCR 232 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEEC-CGGGHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEe-ChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988776554322 23455555555 34578888888
Q ss_pred hccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEE
Q 006800 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (630)
Q Consensus 463 ~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~V 542 (630)
.+.. ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 233 ~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 233 LLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 8863 46789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHH
Q 006800 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (630)
Q Consensus 543 I~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~ 592 (630)
|++++|+++..|+||+||+||.| +.|.+++++++.+...+..+.+.+..
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g-~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAG-KKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSS-SCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred EEecCCCCHHHhhhcccccccCC-CccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999 67999999999999988888877743
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=9.5e-53 Score=451.20 Aligned_cols=368 Identities=29% Similarity=0.455 Sum_probs=321.1
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCC
Q 006800 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298 (630)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 298 (630)
+.++.+|.++++++.+++.|.+.||..|+|+|.++++.++++ +++++++|||+|||++|++|++.++... ..+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~ 95 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKY 95 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CCC
Confidence 456889999999999999999999999999999999999987 9999999999999999999999887432 346
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEE
Q 006800 299 PIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYL 376 (630)
Q Consensus 299 ~~vLil~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~i~~l 376 (630)
+++|||+||++|+.|+++.+.++.... ++.+....++...... ...+++|+|+||++|..++.. ....+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 789999999999999999999997754 6777777777654322 134579999999999999865 55567899999
Q ss_pred Eecchhhhhc-CCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccc
Q 006800 377 VLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE 455 (630)
Q Consensus 377 VvDEah~~~~-~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~ 455 (630)
||||||++.+ .++...+..++..+++..|++++|||+++.+..++..++.++..+...........+.+.+........
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 252 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH
Confidence 9999999987 678889999999999999999999999999999999999999988877777777788888888776667
Q ss_pred cHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q 006800 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLD 535 (630)
Q Consensus 456 k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gld 535 (630)
+...+...+... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 253 ~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 331 (412)
T 3fht_A 253 KFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 331 (412)
T ss_dssp HHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCC
T ss_pred HHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCC
Confidence 777777776543 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCC------CHHHHHHHhhhcccCCCCCeEEEEEecccc-HHHHHHHHHHHHHcCCCCC
Q 006800 536 IKSIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGELVNSLIAAGQNVS 598 (630)
Q Consensus 536 i~~v~~VI~~~~p~------~~~~y~QriGR~gR~g~~~g~~~~l~~~~d-~~~~~~l~~~l~~~~~~vp 598 (630)
+|++++||+|++|+ +...|+||+||+||.| +.|.+++|+++.+ ...+..+.+.+...-..++
T Consensus 332 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 332 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp CTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTT-CCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred ccCCCEEEEECCCCCCCCCcchheeecccCcccCCC-CCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 99999999999995 6689999999999999 6799999998765 6777777777755544444
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=9.8e-53 Score=470.63 Aligned_cols=364 Identities=31% Similarity=0.476 Sum_probs=309.0
Q ss_pred CCcccCC----CCHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCC
Q 006800 225 KTFEDCG----FSTQLMHAISKQGYEKPTSIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298 (630)
Q Consensus 225 ~~~~~~~----l~~~l~~~l~~~~~~~~~~~Q~~~i~~il--~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 298 (630)
.+|.++. |++.++++|...||..|+|+|.++++.++ .+++++++||||+|||++|++|++.++..... ....+
T Consensus 17 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~ 95 (579)
T 3sqw_A 17 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYM 95 (579)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTS
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCC
Confidence 3455543 99999999999999999999999999999 78999999999999999999999999876532 22346
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhhh----cCceEEEEECCCChHHHHHHHHc-CCcEEEeChHHHHHHHHcc-ccccCc
Q 006800 299 PIGVICAPTRELAHQIYLETKKFAKS----HGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMK-ALTMSR 372 (630)
Q Consensus 299 ~~vLil~Ptr~La~Q~~~~~~~~~~~----~~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~-~~~l~~ 372 (630)
+++|||+||++||.|+++.+.+++.. ..+.+..++||.....+...+.. +++|+||||++|.+++... ...+..
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~ 175 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 175 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccccc
Confidence 78999999999999999999998643 35678889999988888777754 7999999999999988764 446788
Q ss_pred eeEEEecchhhhhcCCcHHHHHHHHhhcC-------CCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccc----cccc
Q 006800 373 VTYLVLDEADRMFDLGFEPQIRSIVGQIR-------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG----MANE 441 (630)
Q Consensus 373 i~~lVvDEah~~~~~~~~~~v~~i~~~l~-------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~----~~~~ 441 (630)
+++|||||||+|++++|...+..++..++ +.+|+++||||+++.+..++..++.+|..+.+.... ....
T Consensus 176 ~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 255 (579)
T 3sqw_A 176 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE 255 (579)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCT
T ss_pred CCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccccc
Confidence 99999999999999999999998887663 367999999999999999999999988777654322 2334
Q ss_pred cceEEEEEcCCccccHH----HHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHH
Q 006800 442 DITQVVHVIPSDAEKLP----WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEILQ 514 (630)
Q Consensus 442 ~i~q~~~~~~~~~~k~~----~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~---~~~~~~ihg~~~~~~r~~~~~ 514 (630)
.+.+.+........+.. .+...+......+++||||+++..++.++..|... ++.+..+||++++.+|..+++
T Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~ 335 (579)
T 3sqw_A 256 RIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVK 335 (579)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHH
T ss_pred ccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHH
Confidence 55565555544333332 23333333334678999999999999999999886 899999999999999999999
Q ss_pred HhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHH
Q 006800 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (630)
Q Consensus 515 ~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l 590 (630)
.|++|+.+|||||+++++|+|+|++++||+|++|.++..|+||+||+||.| +.|.|++|+++.+..++..+.+..
T Consensus 336 ~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g-~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 336 RFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG-KEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTT-CCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCC-CCceEEEEEcccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 689999999999988888877654
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.6e-52 Score=464.40 Aligned_cols=357 Identities=31% Similarity=0.478 Sum_probs=304.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHH
Q 006800 232 FSTQLMHAISKQGYEKPTSIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (630)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il--~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~ 309 (630)
|++.+++.|.+.||..|+|+|.++++.++ .+++++++||||||||++|++|++.++..... ....++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-cccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 67899999999999999999999999876532 1234678999999999
Q ss_pred HHHHHHHHHHHHhhh----cCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHcc-ccccCceeEEEecchhh
Q 006800 310 LAHQIYLETKKFAKS----HGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEADR 383 (630)
Q Consensus 310 La~Q~~~~~~~~~~~----~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~-~~~l~~i~~lVvDEah~ 383 (630)
||.|+++.+.++... ..+.+..++||.....+...+. .+++|+||||++|.+++... ...++.+++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999998653 2467888999998888777764 47999999999999988764 34678899999999999
Q ss_pred hhcCCcHHHHHHHHhhcC-------CCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccc----cccccceEEEEEcCC
Q 006800 384 MFDLGFEPQIRSIVGQIR-------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG----MANEDITQVVHVIPS 452 (630)
Q Consensus 384 ~~~~~~~~~v~~i~~~l~-------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~----~~~~~i~q~~~~~~~ 452 (630)
|++++|...+..++..++ +.+|+++||||+++.+..++..++.++..+.+.... .....+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 999999999998877653 377999999999999999999999988776654322 233455566655544
Q ss_pred ccccHHHH----HHhccCCCCCCCEEEEccchhhHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEE
Q 006800 453 DAEKLPWL----LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (630)
Q Consensus 453 ~~~k~~~l----~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~---~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLv 525 (630)
...+...+ ...+......+++||||+++..++.++..|... ++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 33333333 333333345679999999999999999999886 89999999999999999999999999999999
Q ss_pred EcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHH
Q 006800 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (630)
Q Consensus 526 aT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l 590 (630)
||+++++|||+|++++||+|++|.++..|+||+||+||.| +.|.+++|+++.+..++..+.+..
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g-~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG-KEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTT-CCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCC-CCceEEEEEchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 679999999999988888776654
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=8.1e-54 Score=469.08 Aligned_cols=367 Identities=29% Similarity=0.459 Sum_probs=178.2
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCC
Q 006800 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (630)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (630)
.++.+|.+++|++.+++.|.+.||..|+|+|.++++.++++ +++|++||||||||++|++|++.++... ..++
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~ 163 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYP 163 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSC
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCC
Confidence 34778999999999999999999999999999999999987 9999999999999999999999876432 3467
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEEE
Q 006800 300 IGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLV 377 (630)
Q Consensus 300 ~vLil~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~i~~lV 377 (630)
++|||+||++||.|++..+.++.... ++.+.+..++...... ...+++|+|+||++|.+++.. ....+.++++||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 89999999999999999999987753 5677777776554322 123579999999999999865 455678999999
Q ss_pred ecchhhhhc-CCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCcccc
Q 006800 378 LDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456 (630)
Q Consensus 378 vDEah~~~~-~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k 456 (630)
|||||+|.+ .++...+..++..++..+|+++||||++..+..++..++.+|..+...........+.+.+..+.....+
T Consensus 241 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (479)
T 3fmp_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 320 (479)
T ss_dssp ECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------
T ss_pred EECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHH
Confidence 999999987 6788889999999999999999999999999999999999999888877766677777777777665667
Q ss_pred HHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q 006800 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (630)
Q Consensus 457 ~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi 536 (630)
...+...+... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 321 ~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDi 399 (479)
T 3fmp_B 321 FQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDV 399 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCcc
Confidence 77666666543 45789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCC------CHHHHHHHhhhcccCCCCCeEEEEEecccc-HHHHHHHHHHHHHcCCCCC
Q 006800 537 KSIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGELVNSLIAAGQNVS 598 (630)
Q Consensus 537 ~~v~~VI~~~~p~------~~~~y~QriGR~gR~g~~~g~~~~l~~~~d-~~~~~~l~~~l~~~~~~vp 598 (630)
|++++||+||+|. +...|+||+||+||.| +.|.+++|+++.+ ...+..|.+.+...-..++
T Consensus 400 p~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g-~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 400 EQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccCCEEEEecCCCCCccCCCHHHHHHHhcccccCC-CCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 9999999999995 5689999999999999 6799999998765 6667777666655444444
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.5e-50 Score=417.69 Aligned_cols=335 Identities=32% Similarity=0.574 Sum_probs=291.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHH
Q 006800 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (630)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 311 (630)
|++.+.+.|.+.||..|+|+|.++++.+++++++++.+|||+|||++|++|++.. ++++|||+||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999999998764 56799999999999
Q ss_pred HHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHH
Q 006800 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEP 391 (630)
Q Consensus 312 ~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~ 391 (630)
.|+++.+.+++...++.+..++|+.........+. +++|+|+||++|...+......+..+++||+||||++.++++..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999998888899999999988877766655 49999999999999988877778899999999999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCC
Q 006800 392 QIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDG 471 (630)
Q Consensus 392 ~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~ 471 (630)
.+..++..++...+++++|||+++.+...+..++.++..+... .....+.+.+..+.... ......+.. ...+
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~ 221 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW---RSKVQALRE-NKDK 221 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS---HHHHHHHHT-CCCS
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH---HHHHHHHHh-CCCC
Confidence 9999999999999999999999999999999999888766432 23344555555554322 222333333 2467
Q ss_pred CEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCH
Q 006800 472 DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (630)
Q Consensus 472 ~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~ 551 (630)
++||||+++..++.++..|. .+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+|++|+++
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 89999999999999998886 58899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHH
Q 006800 552 DMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (630)
Q Consensus 552 ~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~ 591 (630)
..|+||+||+||.| +.|.+++|+. .+...+..+.+.+.
T Consensus 298 ~~~~Q~~GR~gR~g-~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 298 RTYIHRIGRTGRMG-RKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHHTTBCGGG-CCEEEEEEES-SCHHHHHHHC----
T ss_pred HHhhHhcCccccCC-CCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999 6799999999 88788887776654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.6e-49 Score=438.72 Aligned_cols=349 Identities=17% Similarity=0.295 Sum_probs=285.6
Q ss_pred CCCCCcc--cCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCC
Q 006800 222 RPVKTFE--DCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298 (630)
Q Consensus 222 ~p~~~~~--~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 298 (630)
.....|. ++++++.+.+.|++ .||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. .
T Consensus 16 ~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~ 84 (591)
T 2v1x_A 16 SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------D 84 (591)
T ss_dssp CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------S
T ss_pred cchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------C
Confidence 3344554 47888999999998 59999999999999999999999999999999999999999752 4
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---H---HcCCcEEEeChHHHH---HHHH--ccc
Q 006800 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---L---KAGCEIVIATPGRLI---DMLK--MKA 367 (630)
Q Consensus 299 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l---~~~~dIiv~Tp~~L~---~~l~--~~~ 367 (630)
+++|||+|+++|+.|++..+.++ ++.+..++|+......... + ..+++|+|+||++|. .++. ...
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~ 160 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKA 160 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHH
T ss_pred CcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhh
Confidence 57999999999999999999887 8899999988876654322 2 346899999999874 2222 123
Q ss_pred cccCceeEEEecchhhhhcCC--cHHHHHH--HHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccc
Q 006800 368 LTMSRVTYLVLDEADRMFDLG--FEPQIRS--IVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDI 443 (630)
Q Consensus 368 ~~l~~i~~lVvDEah~~~~~~--~~~~v~~--i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i 443 (630)
..+..+.+|||||||++.+|+ |.+.+.. ++....+..|+++||||+++.+...+..++..+..+.+.. .....++
T Consensus 161 ~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl 239 (591)
T 2v1x_A 161 YEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNL 239 (591)
T ss_dssp HHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTE
T ss_pred hhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCccc
Confidence 456789999999999999988 7666654 4445557899999999999998888888777553333222 2223334
Q ss_pred eEEEEEcCC-ccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCce
Q 006800 444 TQVVHVIPS-DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (630)
Q Consensus 444 ~q~~~~~~~-~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~ 522 (630)
...+..... ...+...|...+......+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+
T Consensus 240 ~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~ 319 (591)
T 2v1x_A 240 YYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ 319 (591)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe
Confidence 333333221 2235567777776555667999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHH
Q 006800 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (630)
Q Consensus 523 VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~ 587 (630)
|||||+++++|||+|+|++||+|++|.++..|+||+||+||.| .+|.|++|+++.|...+..++
T Consensus 320 VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G-~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 320 VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDD-MKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTS-SCEEEEEEECHHHHHHHHHHT
T ss_pred EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCC-CCceEEEEEChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 689999999998877666554
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-50 Score=444.53 Aligned_cols=372 Identities=29% Similarity=0.434 Sum_probs=267.2
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccc
Q 006800 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK 295 (630)
Q Consensus 218 ~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~ 295 (630)
...|.++..|...++++.+++.+.+.|+..|+++|.++++.++++ +++++++|||||||++|+++++.++...
T Consensus 112 ~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~----- 186 (508)
T 3fho_A 112 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS----- 186 (508)
T ss_dssp ---------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----
T ss_pred cccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----
Confidence 334666677777889999999999999999999999999999998 9999999999999999999999887442
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeE
Q 006800 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375 (630)
Q Consensus 296 ~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~ 375 (630)
..++++|||+||++|+.|+++.+.+++...++.+...+++..... ...+++|+|+||++|...+......+..+++
T Consensus 187 ~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~l 262 (508)
T 3fho_A 187 VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKV 262 (508)
T ss_dssp CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCE
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCE
Confidence 336789999999999999999999998777777666666543322 2336899999999999999888778899999
Q ss_pred EEecchhhhhc-CCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCcc
Q 006800 376 LVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454 (630)
Q Consensus 376 lVvDEah~~~~-~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~ 454 (630)
|||||||++.+ .++...+..++..+++..|++++|||+++.+..+...++.++..+...........+.+.+..+....
T Consensus 263 IIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 342 (508)
T 3fho_A 263 FVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEE 342 (508)
T ss_dssp EEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CH
T ss_pred EEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchH
Confidence 99999999987 67899999999999999999999999999999999999999988776665566666777777766666
Q ss_pred ccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q 006800 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (630)
Q Consensus 455 ~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gl 534 (630)
.+...+...+... ..+++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 343 ~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 343 HKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp HHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred HHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 6777777777654 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCC------CCHHHHHHHhhhcccCCCCCeEEEEEecc-ccHHHHHHHHHHHHHcCCCCCHH
Q 006800 535 DIKSIKSVVNFDIA------RDMDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIAAGQNVSME 600 (630)
Q Consensus 535 di~~v~~VI~~~~p------~~~~~y~QriGR~gR~g~~~g~~~~l~~~-~d~~~~~~l~~~l~~~~~~vp~~ 600 (630)
|+|++++||+|++| .++..|+||+||+||.| +.|.+++|++. .+...+..+.+.+...-..+|..
T Consensus 422 Dip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g-~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFG-RVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp CCTTCCEEEC----CC-----CTHHHHHTTSCCC------CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred CccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCC-CCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 99999999999999 78999999999999999 67999999984 56666777777765555555543
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.4e-47 Score=419.80 Aligned_cols=341 Identities=19% Similarity=0.331 Sum_probs=277.8
Q ss_pred CCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEE
Q 006800 224 VKTFEDCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (630)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (630)
+.+|+++++++.+.+.|.+ .||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. .+.+|
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~l 69 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTV 69 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEE
Confidence 4679999999999999998 79999999999999999999999999999999999999999743 35689
Q ss_pred EEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH---HHH-HcCCcEEEeChHHHHHHHHccccccCceeEEEe
Q 006800 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF---KEL-KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (630)
Q Consensus 303 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l-~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVv 378 (630)
||+|+++|+.|++..+.++ ++.+..++++....... ..+ ...++|+|+||++|........+...++.+|||
T Consensus 70 vi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred EECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 9999999999999998876 88888888887765443 222 245899999999996322222234478999999
Q ss_pred cchhhhhcCC--cHHHHHHH---HhhcCCCCcEEEEeecccHHHHHHHHHHc--CCCeEEEEcccccccccceEEEEEcC
Q 006800 379 DEADRMFDLG--FEPQIRSI---VGQIRPDRQTLLFSATMPRKVEKLAREIL--SDPVRVTVGEVGMANEDITQVVHVIP 451 (630)
Q Consensus 379 DEah~~~~~~--~~~~v~~i---~~~l~~~~q~l~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~~i~q~~~~~~ 451 (630)
||||++.+|+ |.+.+..+ ...+ +..+++++|||+++.+...+...+ .+|..+. .. ....++...+..
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~--~~r~~l~~~v~~-- 219 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SS--FDRPNIRYMLME-- 219 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CC--CCCTTEEEEEEE--
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CC--CCCCceEEEEEe--
Confidence 9999999887 66655543 3333 578999999999988765444333 3444332 22 122233322222
Q ss_pred CccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q 006800 452 SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (630)
Q Consensus 452 ~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~ 531 (630)
...+...+...+... ..+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 220 -~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~ 297 (523)
T 1oyw_A 220 -KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297 (523)
T ss_dssp -CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC
T ss_pred -CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 235667777777653 456899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHH
Q 006800 532 RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (630)
Q Consensus 532 ~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~ 588 (630)
+|+|+|++++||+|++|.++..|+||+||+||.| .+|.+++|+++.|...+..++.
T Consensus 298 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g-~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG-LPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTS-SCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCccCccEEEEECCCCCHHHHHHHhccccCCC-CCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 6799999999998877666554
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=7.5e-48 Score=413.85 Aligned_cols=326 Identities=22% Similarity=0.302 Sum_probs=268.4
Q ss_pred HHHHHHHc-CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHH
Q 006800 236 LMHAISKQ-GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (630)
Q Consensus 236 l~~~l~~~-~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 314 (630)
+.+.+++. ++ +|+|+|.++++.+++|+++++++|||||||++|++|++..+ ..++++|||+||++||.|+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--------~~~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------cCCCEEEEEECCHHHHHHH
Confidence 34445543 55 79999999999999999999999999999999999988765 2378899999999999999
Q ss_pred HHHHHHHhhhcCceEEEEECCCCh---HHHHHHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchhhhh-----
Q 006800 315 YLETKKFAKSHGIRVSAVYGGMSK---LDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF----- 385 (630)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~----- 385 (630)
++.+.+++. .++++..++||.+. ..++..+..+ ++|+|+||++|.+.+.. ..+..+++|||||||++.
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccch
Confidence 999999887 78999999999988 6667777777 99999999999887764 566799999999998655
Q ss_pred -----c-CCcHHH-HHHHHhhcC-----------CCCcEEEEeec-ccHHHH-HHHHHHcCCCeEEEEcccccccccceE
Q 006800 386 -----D-LGFEPQ-IRSIVGQIR-----------PDRQTLLFSAT-MPRKVE-KLAREILSDPVRVTVGEVGMANEDITQ 445 (630)
Q Consensus 386 -----~-~~~~~~-v~~i~~~l~-----------~~~q~l~~SAT-~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~i~q 445 (630)
+ ++|... +..++..++ +.+|+++|||| +|..+. .+...++. +.+.........+.+
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~ 233 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITH 233 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchh
Confidence 3 778888 788888876 88999999999 555443 33444433 122223334455666
Q ss_pred EEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEE-EEeCCCCHHHHHHHHHHhhcCCceEE
Q 006800 446 VVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA-ALHGDKDQASRMEILQKFKSGVYHVL 524 (630)
Q Consensus 446 ~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~-~ihg~~~~~~r~~~~~~F~~g~~~VL 524 (630)
.+... .+...|..++.. ..+++||||+++..++.++..|...++.+. .+||. +|. ++.|++|+++||
T Consensus 234 ~~~~~----~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 234 VRISS----RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp EEESS----CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred eeecc----CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 65544 456666666655 247999999999999999999999999998 99994 444 999999999999
Q ss_pred EE----cCCcccCCCCCC-ccEEEEeCCC--CCHHHHHHHhhhcccCCC---CCeEEEEEeccccHHHHHHHHHHHH
Q 006800 525 IA----TDVAARGLDIKS-IKSVVNFDIA--RDMDMHVHRIGRTGRAGD---KDGTAYTLVTQKEARFAGELVNSLI 591 (630)
Q Consensus 525 va----T~~~~~Gldi~~-v~~VI~~~~p--~~~~~y~QriGR~gR~g~---~~g~~~~l~~~~d~~~~~~l~~~l~ 591 (630)
|| |+++++|+|+|+ +++||+|++| .++..|+||+||+||.|. +.|.+++|+ .+...+..+.+.+.
T Consensus 302 vat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 302 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 99 999999999999 9999999999 999999999999999984 479999999 67777777777776
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2.2e-46 Score=416.32 Aligned_cols=372 Identities=22% Similarity=0.266 Sum_probs=284.3
Q ss_pred ccCCCcccCccCCccccCCCHHHHHHHHHHcCceec-cCCCCCCCCCcccCCCCHHHHHHHH--------HcCCCCCcHH
Q 006800 181 DYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVS-GFDVPRPVKTFEDCGFSTQLMHAIS--------KQGYEKPTSI 251 (630)
Q Consensus 181 ~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~p~~~~~~~~l~~~l~~~l~--------~~~~~~~~~~ 251 (630)
.|.++...++...+.+..++.+++......+...+. |.. ++ +.+.+++. ..|| .|+|+
T Consensus 21 ~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~~-------ld-----~~l~ea~a~vrea~~r~lG~-~pt~V 87 (844)
T 1tf5_A 21 RYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGAT-------TD-----DLLVEAFAVVREASRRVTGM-FPFKV 87 (844)
T ss_dssp HHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTCC-------HH-----HHHHHHHHHHHHHHHHHHSC-CCCHH
T ss_pred HHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCCC-------hH-----HHHHHHHHHHHHHHHHHcCC-CCcHH
Confidence 455777777878888999999999877776644432 221 22 22333322 4699 99999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEE
Q 006800 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSA 331 (630)
Q Consensus 252 Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~ 331 (630)
|..++|.+++|+ |+.++||+|||++|++|++.+.+. ++.++||+||++||.|+++++..++..+|+++.+
T Consensus 88 Q~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~ 157 (844)
T 1tf5_A 88 QLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGL 157 (844)
T ss_dssp HHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 999999999999 999999999999999999865432 5679999999999999999999999999999999
Q ss_pred EECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHcc------ccccCceeEEEecchhhhh-cCC---------------
Q 006800 332 VYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DLG--------------- 388 (630)
Q Consensus 332 ~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~------~~~l~~i~~lVvDEah~~~-~~~--------------- 388 (630)
++||.+.... ....+++|+|+||++| .+++..+ ...++.+.++||||||+|+ +++
T Consensus 158 i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~ 235 (844)
T 1tf5_A 158 NLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTK 235 (844)
T ss_dssp CCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCH
T ss_pred EeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchh
Confidence 9999876543 3445799999999999 6666543 3567899999999999998 664
Q ss_pred cHHHHHHHHhhcC---------CCCcEE-----------------EEeecccH---HHHHHH--HHHcC-CCeEEE----
Q 006800 389 FEPQIRSIVGQIR---------PDRQTL-----------------LFSATMPR---KVEKLA--REILS-DPVRVT---- 432 (630)
Q Consensus 389 ~~~~v~~i~~~l~---------~~~q~l-----------------~~SAT~~~---~~~~l~--~~~~~-~~~~i~---- 432 (630)
|...+..++..++ +.+|++ +||||++. .+...+ ..++. ++..+.
T Consensus 236 ~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~ 315 (844)
T 1tf5_A 236 LYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQ 315 (844)
T ss_dssp HHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTE
T ss_pred HHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCe
Confidence 6788999999997 478888 89999874 333332 22222 111110
Q ss_pred ---Eccc-----------------------------ccccccce------------------------------------
Q 006800 433 ---VGEV-----------------------------GMANEDIT------------------------------------ 444 (630)
Q Consensus 433 ---~~~~-----------------------------~~~~~~i~------------------------------------ 444 (630)
+... ......|.
T Consensus 316 v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~I 395 (844)
T 1tf5_A 316 VVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTI 395 (844)
T ss_dssp EEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEEC
T ss_pred eEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEe
Confidence 0000 00000000
Q ss_pred ----------EEEEEcCCccccHHHHHHhccCC-CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q 006800 445 ----------QVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEIL 513 (630)
Q Consensus 445 ----------q~~~~~~~~~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~ 513 (630)
+...++.....|+..|+..+... ....++||||+|+..++.|+..|...|+++.++||++.+.+|..+.
T Consensus 396 Ptn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~ 475 (844)
T 1tf5_A 396 PTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIE 475 (844)
T ss_dssp CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHT
T ss_pred cCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHH
Confidence 00011223456777787777543 2356899999999999999999999999999999999888776555
Q ss_pred HHhhcCCceEEEEcCCcccCCCCC--------CccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccH
Q 006800 514 QKFKSGVYHVLIATDVAARGLDIK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (630)
Q Consensus 514 ~~F~~g~~~VLvaT~~~~~Gldi~--------~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~ 580 (630)
..|+.| .|||||++++||+||+ ++.+||+|+.|.+...|+||+||+||.| .+|.+++|++..|.
T Consensus 476 ~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG-~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 476 EAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQG-DPGITQFYLSMEDE 547 (844)
T ss_dssp TTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGG-CCEEEEEEEETTSS
T ss_pred HcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCC-CCCeEEEEecHHHH
Confidence 555544 6999999999999999 8889999999999999999999999999 68999999998874
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-46 Score=440.78 Aligned_cols=331 Identities=18% Similarity=0.197 Sum_probs=262.5
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEc
Q 006800 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (630)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~ 305 (630)
.|...+++..+...+...++..|+|+|.++++.+++|+++|++||||||||++|++|++..+. +++++||++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------~g~rvlvl~ 234 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTS 234 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--------TTCEEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--------cCCeEEEEc
Confidence 555566666666566666777899999999999999999999999999999999999998863 367899999
Q ss_pred ccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh
Q 006800 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 306 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
||++|+.|++..+.+++. .+..++|+.+.. .+++|+|+||++|.+++......+.++++|||||||+|.
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTT
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcc
Confidence 999999999999999864 567788877643 458999999999999998887778999999999999999
Q ss_pred cCCcHHHHHHHHhhcCCCCcEEEEeecccHH--HHHHHHHHcCCCeEEEEcccccccccceEEEEEcC---------Cc-
Q 006800 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPRK--VEKLAREILSDPVRVTVGEVGMANEDITQVVHVIP---------SD- 453 (630)
Q Consensus 386 ~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~--~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~---------~~- 453 (630)
++++...+..++..+++..|+|+||||+++. +..++..+...|..+....... ..+.+.+.... ..
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~vd~~~ 381 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKS 381 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEEETTT
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeeecccc
Confidence 9999999999999999999999999998864 3455566666666554432211 11111111100 00
Q ss_pred --------------------------------------------cccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHH
Q 006800 454 --------------------------------------------AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQ 489 (630)
Q Consensus 454 --------------------------------------------~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~ 489 (630)
..+...++..+... ..+++||||+++..|+.++..
T Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~-~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 382 TFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp EECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT-TCCCEEEEESCHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc-CCCCEEEEeCcHHHHHHHHHH
Confidence 11222233333221 346899999999999999999
Q ss_pred HHhCCCc---------------------------------------EEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCc
Q 006800 490 LAQKGFK---------------------------------------AAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (630)
Q Consensus 490 L~~~~~~---------------------------------------~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~ 530 (630)
|...++. ++.+||+|++.+|..++..|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 8653222 8999999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEeCCC--------CCHHHHHHHhhhcccCC-CCCeEEEEEeccc
Q 006800 531 ARGLDIKSIKSVVNFDIA--------RDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (630)
Q Consensus 531 ~~Gldi~~v~~VI~~~~p--------~~~~~y~QriGR~gR~g-~~~g~~~~l~~~~ 578 (630)
++|||+|++++||+++.| .++..|+||+||+||.| +..|.|++++++.
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999999999999977663 36778999999999999 4579999999876
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=6.7e-45 Score=405.73 Aligned_cols=331 Identities=20% Similarity=0.214 Sum_probs=208.1
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhh
Q 006800 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (630)
Q Consensus 245 ~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 324 (630)
..+|+|+|.++++.+++|+++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.||+..+.+++..
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999999998886643 233678999999999999999999999988
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc-ccCceeEEEecchhhhhcCCcHHHHH-HHHh-hc-
Q 006800 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQIR-SIVG-QI- 400 (630)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~l~~i~~lVvDEah~~~~~~~~~~v~-~i~~-~l- 400 (630)
.++++..++|+......+..+..+++|+|+||++|...+..... .+..+++|||||||++.+++....+. .++. .+
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 89999999999887777777778899999999999999988776 78899999999999998876443332 2222 11
Q ss_pred --CCCCcEEEEeecccH-----------HHHHHHHHH------------------cCCCeEEEEcccccccc--------
Q 006800 401 --RPDRQTLLFSATMPR-----------KVEKLAREI------------------LSDPVRVTVGEVGMANE-------- 441 (630)
Q Consensus 401 --~~~~q~l~~SAT~~~-----------~~~~l~~~~------------------~~~~~~i~~~~~~~~~~-------- 441 (630)
.+..|+++||||++. .+..+...+ ...|.............
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 466899999999953 222222222 11121111100000000
Q ss_pred ----------cce---EEE-------------------------------------------------------------
Q 006800 442 ----------DIT---QVV------------------------------------------------------------- 447 (630)
Q Consensus 442 ----------~i~---q~~------------------------------------------------------------- 447 (630)
.+. ...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 000 000
Q ss_pred -------------------------------------------EEcCCccccHHHHHHhccCC---CCCCCEEEEccchh
Q 006800 448 -------------------------------------------HVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKT 481 (630)
Q Consensus 448 -------------------------------------------~~~~~~~~k~~~l~~~l~~~---~~~~~iLIF~~s~~ 481 (630)
........|...|...|... ...+++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 00000134555566666433 34679999999999
Q ss_pred hHHHHHHHHHhC------------CCcEEEEeCCCCHHHHHHHHHHhhc-CCceEEEEcCCcccCCCCCCccEEEEeCCC
Q 006800 482 TVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFDIA 548 (630)
Q Consensus 482 ~~~~l~~~L~~~------------~~~~~~ihg~~~~~~r~~~~~~F~~-g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p 548 (630)
.++.++..|... |..+..+||++++.+|..+++.|++ |+++|||||+++++|+|+|++++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999875 5566677888999999999999999 999999999999999999999999999999
Q ss_pred CCHHHHHHHhhhcccCCCCCeEEEEEeccccHH
Q 006800 549 RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (630)
Q Consensus 549 ~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~ 581 (630)
+|+..|+||+|| ||.. .|.+++|+++.+..
T Consensus 482 ~s~~~~~Qr~GR-gR~~--~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRAA--GSKCILVTSKTEVV 511 (556)
T ss_dssp SCHHHHHHC-----------CCEEEEESCHHHH
T ss_pred CCHHHHHHhcCC-CCCC--CceEEEEEeCcchH
Confidence 999999999999 9984 79999999987653
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.7e-44 Score=410.23 Aligned_cols=338 Identities=24% Similarity=0.341 Sum_probs=269.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEE
Q 006800 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (630)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLi 303 (630)
.+|.++++++.+.+.+.+.||..|+|+|.++++. +.+++++++++|||||||++|.++++.++... +.++||
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il~ 80 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAIY 80 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEEE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEEE
Confidence 5799999999999999999999999999999999 78999999999999999999999999887532 678999
Q ss_pred EcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 006800 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (630)
Q Consensus 304 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (630)
++|+++||.|++..++++ ...|+++..++|+....... ..+++|+|+||++|..++......++++++|||||||.
T Consensus 81 i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 81 VTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp ECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGG
T ss_pred EeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhh
Confidence 999999999999999654 44589999999887654431 23689999999999999888766789999999999999
Q ss_pred hhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEccccccc---------ccceEEEEEcCC--
Q 006800 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMAN---------EDITQVVHVIPS-- 452 (630)
Q Consensus 384 ~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~---------~~i~q~~~~~~~-- 452 (630)
+.+.++...+..++..++ ..|+|++|||+++. ..++.++.. +. +......... ........+...
T Consensus 157 l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~l~~-~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (715)
T 2va8_A 157 LNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKWLGA-EP-VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTT 232 (715)
T ss_dssp GGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHHHTC-EE-EECCCCSSCEEEEEEEECSSTTEEEEEETTSCE
T ss_pred cCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHHhCC-Cc-cCCCCCCCCceEEEEecCCcccceeeecCcchh
Confidence 988888999998888876 89999999999853 556665532 21 1111000000 000001111110
Q ss_pred -----ccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCC---------------------------------
Q 006800 453 -----DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG--------------------------------- 494 (630)
Q Consensus 453 -----~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~--------------------------------- 494 (630)
...+...+...+. ..+++||||+++..++.++..|....
T Consensus 233 ~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 309 (715)
T 2va8_A 233 KKVHGDDAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKS 309 (715)
T ss_dssp EEEESSSHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHH
Confidence 1223344444443 46899999999999999999998642
Q ss_pred ---CcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEE----eC-------CCCCHHHHHHHhhh
Q 006800 495 ---FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD-------IARDMDMHVHRIGR 560 (630)
Q Consensus 495 ---~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~~-------~p~~~~~y~QriGR 560 (630)
..+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||+ |+ .|.++..|.||+||
T Consensus 310 ~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GR 389 (715)
T 2va8_A 310 LISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGR 389 (715)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTT
T ss_pred HHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhh
Confidence 35899999999999999999999999999999999999999999999999 99 89999999999999
Q ss_pred cccCC-CCCeEEEEEeccccH
Q 006800 561 TGRAG-DKDGTAYTLVTQKEA 580 (630)
Q Consensus 561 ~gR~g-~~~g~~~~l~~~~d~ 580 (630)
+||.| +..|.|+++++..+.
T Consensus 390 aGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 390 AGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp BCCTTTCSCEEEEEECSCGGG
T ss_pred cCCCCCCCCceEEEEeCCchH
Confidence 99998 447999999987763
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.6e-44 Score=414.05 Aligned_cols=334 Identities=20% Similarity=0.290 Sum_probs=272.9
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEE
Q 006800 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (630)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil 304 (630)
+|.++++++.+.+.+.+.||..|+|+|.++++. +.+++++++++|||||||++|.++++.++... ++++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 588999999999999999999999999999998 88999999999999999999999999887532 6789999
Q ss_pred cccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhh
Q 006800 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (630)
Q Consensus 305 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~ 384 (630)
+|+++||.|++..+.++.. .|+++..++|+...... ...+++|+|+||++|..++......++++++|||||||.+
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999975543 58999999997665432 1246899999999999988877666889999999999999
Q ss_pred hcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEE------EEcCC----cc
Q 006800 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV------HVIPS----DA 454 (630)
Q Consensus 385 ~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~------~~~~~----~~ 454 (630)
.++++...+..++..++...|+|++|||+++. ..+..++ ..+. +.... ....+...+ ..... ..
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~~l-~~~~-~~~~~---rp~~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAEWL-NAEL-IVSDW---RPVKLRRGVFYQGFVTWEDGSIDRFS 224 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHHHT-TEEE-EECCC---CSSEEEEEEEETTEEEETTSCEEECS
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHHHh-CCcc-cCCCC---CCCcceEEEEeCCeeeccccchhhhh
Confidence 98889999999999888789999999999863 5555554 3211 11110 011111111 11110 12
Q ss_pred ccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC---------------------------------CCcEEEEe
Q 006800 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---------------------------------GFKAAALH 501 (630)
Q Consensus 455 ~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~---------------------------------~~~~~~ih 501 (630)
.+...+...+. ..+++||||+++..++.++..|... ...+..+|
T Consensus 225 ~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 225 SWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp STTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 33444444443 3589999999999999999998753 12599999
Q ss_pred CCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEE----eC----CCCCHHHHHHHhhhcccCC-CCCeEEE
Q 006800 502 GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD----IARDMDMHVHRIGRTGRAG-DKDGTAY 572 (630)
Q Consensus 502 g~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~~----~p~~~~~y~QriGR~gR~g-~~~g~~~ 572 (630)
|++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.++..|+||+||+||.| +..|.|+
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999998 76 5899999999999999998 4579999
Q ss_pred EEecccc
Q 006800 573 TLVTQKE 579 (630)
Q Consensus 573 ~l~~~~d 579 (630)
++++..+
T Consensus 382 ~l~~~~~ 388 (720)
T 2zj8_A 382 IVSTSDD 388 (720)
T ss_dssp EECSSSC
T ss_pred EEecCcc
Confidence 9999887
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.7e-44 Score=400.47 Aligned_cols=334 Identities=20% Similarity=0.238 Sum_probs=234.6
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006800 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
.+|+|+|.++++.+++|+++++++|||+|||++|++|++.++...+ ...++++|||+||++|+.||+..+.+++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4799999999999999999999999999999999999999887653 2337789999999999999999999999888
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc-ccCceeEEEecchhhhhcCCc-HHHHHHHHhhc---
Q 006800 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGF-EPQIRSIVGQI--- 400 (630)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~l~~i~~lVvDEah~~~~~~~-~~~v~~i~~~l--- 400 (630)
++++..++|+......+..+..+++|+|+||++|...+..... .+..+++|||||||++.+.+. ...+...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 9999999999987777777777899999999999999988766 688999999999999987652 22222333322
Q ss_pred --CCCCcEEEEeecccHH-----------HHHHHHHHcCCCeEEEEcccc----cccccceEEEEEcC------------
Q 006800 401 --RPDRQTLLFSATMPRK-----------VEKLAREILSDPVRVTVGEVG----MANEDITQVVHVIP------------ 451 (630)
Q Consensus 401 --~~~~q~l~~SAT~~~~-----------~~~l~~~~~~~~~~i~~~~~~----~~~~~i~q~~~~~~------------ 451 (630)
.+..|+++||||++.. +..+... +..+......... ............+.
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAA-LDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH-TTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHh-cCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 2567999999999542 2222222 2211111100000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 006800 452 -------------------------------------------------------------------------------- 451 (630)
Q Consensus 452 -------------------------------------------------------------------------------- 451 (630)
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred -------------------------------------------------CccccHHHHHHhccCC---CCCCCEEEEccc
Q 006800 452 -------------------------------------------------SDAEKLPWLLEKLPGM---IDDGDVLVFASK 479 (630)
Q Consensus 452 -------------------------------------------------~~~~k~~~l~~~l~~~---~~~~~iLIF~~s 479 (630)
....|...|...|... ...+++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 0133555555555443 245799999999
Q ss_pred hhhHHHHHHHHHhCC------------CcEEEEeCCCCHHHHHHHHHHhhc-CCceEEEEcCCcccCCCCCCccEEEEeC
Q 006800 480 KTTVDEIESQLAQKG------------FKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFD 546 (630)
Q Consensus 480 ~~~~~~l~~~L~~~~------------~~~~~ihg~~~~~~r~~~~~~F~~-g~~~VLvaT~~~~~Gldi~~v~~VI~~~ 546 (630)
+..++.++..|...+ .....+||+|++.+|..+++.|++ |+++|||||+++++|+|+|++++||+||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 999999999998863 345556669999999999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHH
Q 006800 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586 (630)
Q Consensus 547 ~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l 586 (630)
+|+|+..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 479 ~p~s~~~~~Qr~GR-gR~--~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 479 YVGNVIKMIQTRGR-GRA--RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCSSCCCEECSSCC-CTT--TSCEEEEEESCHHHHHHHHH
T ss_pred CCCCHHHHHHhcCc-CcC--CCceEEEEEcCCCHHHHHHH
Confidence 99999999999999 988 47999999998876544333
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.5e-45 Score=419.07 Aligned_cols=342 Identities=21% Similarity=0.250 Sum_probs=226.6
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHH
Q 006800 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (630)
Q Consensus 238 ~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 317 (630)
..+...|+..|+|+|.++++++++|+++|+++|||+|||++|++|++.++...+ ...++++|||+||++|+.||+.+
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 455677999999999999999999999999999999999999999998886543 12346899999999999999999
Q ss_pred HHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc-ccCceeEEEecchhhhhcCCcHH-HHHH
Q 006800 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEP-QIRS 395 (630)
Q Consensus 318 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~l~~i~~lVvDEah~~~~~~~~~-~v~~ 395 (630)
+.+++...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+..+++|||||||++.+..... .+..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999998788999999999877666677777899999999999999987766 68899999999999987554222 2222
Q ss_pred HHhh-----cCCCCcEEEEeeccc-------HH-HHHHHHH---------------------HcCCCeEEEEccccccc-
Q 006800 396 IVGQ-----IRPDRQTLLFSATMP-------RK-VEKLARE---------------------ILSDPVRVTVGEVGMAN- 440 (630)
Q Consensus 396 i~~~-----l~~~~q~l~~SAT~~-------~~-~~~l~~~---------------------~~~~~~~i~~~~~~~~~- 440 (630)
.+.. .++..++|+||||+. .. +..+... +...|............
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 2221 246789999999996 11 2222111 11122211100000000
Q ss_pred --------------------------------------------------------------------------------
Q 006800 441 -------------------------------------------------------------------------------- 440 (630)
Q Consensus 441 -------------------------------------------------------------------------------- 440 (630)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred ------------------------------ccceEEEEE---------------cCCccccHHHHHHhccCC---CCCCC
Q 006800 441 ------------------------------EDITQVVHV---------------IPSDAEKLPWLLEKLPGM---IDDGD 472 (630)
Q Consensus 441 ------------------------------~~i~q~~~~---------------~~~~~~k~~~l~~~l~~~---~~~~~ 472 (630)
..+.+.+.. ......|...|..++... ...++
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 000000000 001234566666666543 24578
Q ss_pred EEEEccchhhHHHHHHHHHhCC----CcEEEE--------eCCCCHHHHHHHHHHhhc-CCceEEEEcCCcccCCCCCCc
Q 006800 473 VLVFASKKTTVDEIESQLAQKG----FKAAAL--------HGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSI 539 (630)
Q Consensus 473 iLIF~~s~~~~~~l~~~L~~~~----~~~~~i--------hg~~~~~~r~~~~~~F~~-g~~~VLvaT~~~~~Gldi~~v 539 (630)
+||||+++..++.++..|...+ +.+..+ ||+|++.+|.++++.|++ |+.+|||||+++++|||+|++
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999987 888888 559999999999999998 999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHH
Q 006800 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGE 585 (630)
Q Consensus 540 ~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~ 585 (630)
++||+||+|+|+..|+||+|| ||.. .|.+++|++..+......
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~~--~g~~~~l~~~~~~~~~~~ 523 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRAR--GSKCFLLTSNAGVIEKEQ 523 (696)
T ss_dssp SEEEEESCC--CCCC----------C--CCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcCC--CceEEEEecCCCHHHHHH
Confidence 999999999999999999999 9984 799999999877644433
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.7e-44 Score=412.61 Aligned_cols=334 Identities=22% Similarity=0.323 Sum_probs=266.7
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEE
Q 006800 226 TFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (630)
Q Consensus 226 ~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLi 303 (630)
+|++++ +++.+.+.+.+.||..|+|+|.++++.+++++++++++|||||||++|.++++.++.. ++++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577777 9999999999999999999999999999999999999999999999999999988643 567999
Q ss_pred EcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 006800 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (630)
Q Consensus 304 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (630)
++|+++||.|+++.++++. ..|+++..++|+...... ...+++|+|+||++|..++......++++++|||||||.
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 9999999999999996554 458999999988765432 123689999999999999988766688999999999999
Q ss_pred hhcCCcHHHHHHHHhhc---CCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEE------EEcCCc-
Q 006800 384 MFDLGFEPQIRSIVGQI---RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV------HVIPSD- 453 (630)
Q Consensus 384 ~~~~~~~~~v~~i~~~l---~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~------~~~~~~- 453 (630)
+.++++...+..++..+ ++..|+|++|||+++ ...++.++ ..+. +..... ...+...+ ......
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r---~~~l~~~~~~~~~~~~~~~~~ 223 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL-DADY-YVSDWR---PVPLVEGVLCEGTLELFDGAF 223 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT-TCEE-EECCCC---SSCEEEEEECSSEEEEEETTE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh-CCCc-ccCCCC---CccceEEEeeCCeeeccCcch
Confidence 99888888888877666 578999999999985 45566554 3221 111111 11111111 011100
Q ss_pred -----cccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC------------------------------CCcEE
Q 006800 454 -----AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK------------------------------GFKAA 498 (630)
Q Consensus 454 -----~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~------------------------------~~~~~ 498 (630)
..+...+...+. ..+++||||+++..++.++..|... +..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~ 300 (702)
T 2p6r_A 224 STSRRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAA 300 (702)
T ss_dssp EEEEECCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCC
T ss_pred hhhhhhhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeE
Confidence 013344444443 4689999999999999999988753 24588
Q ss_pred EEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEE----eC---CCCCHHHHHHHhhhcccCC-CCCeE
Q 006800 499 ALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD---IARDMDMHVHRIGRTGRAG-DKDGT 570 (630)
Q Consensus 499 ~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~~---~p~~~~~y~QriGR~gR~g-~~~g~ 570 (630)
.+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.++..|.||+||+||.| +..|.
T Consensus 301 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~ 380 (702)
T 2p6r_A 301 FHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGE 380 (702)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred EecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCce
Confidence 9999999999999999999999999999999999999999999998 66 7899999999999999998 45799
Q ss_pred EEEEeccccH
Q 006800 571 AYTLVTQKEA 580 (630)
Q Consensus 571 ~~~l~~~~d~ 580 (630)
|+++++..+.
T Consensus 381 ~~~l~~~~~~ 390 (702)
T 2p6r_A 381 AIIIVGKRDR 390 (702)
T ss_dssp EEEECCGGGH
T ss_pred EEEEecCccH
Confidence 9999998773
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.7e-43 Score=409.44 Aligned_cols=333 Identities=20% Similarity=0.209 Sum_probs=214.8
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006800 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 243 ~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
.|+..|+|+|.++++.+++|+++|+++|||+|||++|++|++.++...+ ...++++|||+||++|+.||+..+.+++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 3668999999999999999999999999999999999999999887643 2336789999999999999999999999
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc-ccCceeEEEecchhhhhcCCcHHHH-HHHHhh-
Q 006800 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQI-RSIVGQ- 399 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~l~~i~~lVvDEah~~~~~~~~~~v-~~i~~~- 399 (630)
...++++..++|+.........+..+++|+|+||++|...+..... .+..+++|||||||++...+....+ ..++..
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8889999999999988777778888999999999999999987766 7889999999999998876533332 222222
Q ss_pred ---cCCCCcEEEEeecccH-----------HHHHHHHHH------------------cCCCeEEEEcccccccc------
Q 006800 400 ---IRPDRQTLLFSATMPR-----------KVEKLAREI------------------LSDPVRVTVGEVGMANE------ 441 (630)
Q Consensus 400 ---l~~~~q~l~~SAT~~~-----------~~~~l~~~~------------------~~~~~~i~~~~~~~~~~------ 441 (630)
..+..|+++||||++. .+..+...+ +..|.............
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 1567899999999952 222222221 12221111100000000
Q ss_pred ------------cce------EEE-E------------------------------------------------------
Q 006800 442 ------------DIT------QVV-H------------------------------------------------------ 448 (630)
Q Consensus 442 ------------~i~------q~~-~------------------------------------------------------ 448 (630)
.+. ... .
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 000 000 0
Q ss_pred ----------------------------------------------EcCCccccHHHHHHhccCC---CCCCCEEEEccc
Q 006800 449 ----------------------------------------------VIPSDAEKLPWLLEKLPGM---IDDGDVLVFASK 479 (630)
Q Consensus 449 ----------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~iLIF~~s 479 (630)
.......|...|...|... ...+++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 0000133555555555432 245799999999
Q ss_pred hhhHHHHHHHHHhC------------CCcEEEEeCCCCHHHHHHHHHHhhc-CCceEEEEcCCcccCCCCCCccEEEEeC
Q 006800 480 KTTVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFD 546 (630)
Q Consensus 480 ~~~~~~l~~~L~~~------------~~~~~~ihg~~~~~~r~~~~~~F~~-g~~~VLvaT~~~~~Gldi~~v~~VI~~~ 546 (630)
+..++.++.+|... |..+..+||++++.+|..+++.|++ |+++|||||+++++|||+|++++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999873 5667788999999999999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHH
Q 006800 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (630)
Q Consensus 547 ~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~ 581 (630)
+|+|+..|+||+|| ||. +.|.+++|+++.+..
T Consensus 721 ~p~s~~~~iQr~GR-GR~--~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA--AGSKCILVTSKTEVV 752 (797)
T ss_dssp CCSCHHHHHTC----------CCCEEEEECCHHHH
T ss_pred CCCCHHHHHHhcCC-CCC--CCceEEEEEeCCcHH
Confidence 99999999999999 998 479999999987643
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=8.4e-43 Score=410.89 Aligned_cols=320 Identities=23% Similarity=0.303 Sum_probs=264.0
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006800 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 243 ~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
.|| +|+|+|.+++|.+++|+|++++||||||||++|+++++..+ ..++++|||+||++||.|+++.+.+++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--------~~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--------hcCCeEEEEechHHHHHHHHHHHHHhh
Confidence 466 69999999999999999999999999999998888877665 237889999999999999999999977
Q ss_pred hhcCceEEEEECCCCh---HHHHHHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchhh----------hhc-C
Q 006800 323 KSHGIRVSAVYGGMSK---LDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR----------MFD-L 387 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~~---~~~~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~----------~~~-~ 387 (630)
..++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. ..+.++++|||||||+ |++ +
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 668999999999987 6777888877 99999999999888764 5678999999999975 445 8
Q ss_pred CcHHH-HHHHHhhcC-----------CCCcEEEEeec-ccHHHH-HHHHHHcCCCeEEEEcccccccccceEEEEEcCCc
Q 006800 388 GFEPQ-IRSIVGQIR-----------PDRQTLLFSAT-MPRKVE-KLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD 453 (630)
Q Consensus 388 ~~~~~-v~~i~~~l~-----------~~~q~l~~SAT-~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~ 453 (630)
+|... +..++..++ ..+|+++|||| +|..+. .+...++. +.+.........+.+.+..+
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~--- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS--- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---
Confidence 88888 889998877 88999999999 555443 23444433 23333344455666666544
Q ss_pred cccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEE-EEeCCCCHHHHHHHHHHhhcCCceEEEE----cC
Q 006800 454 AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA-ALHGDKDQASRMEILQKFKSGVYHVLIA----TD 528 (630)
Q Consensus 454 ~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~-~ihg~~~~~~r~~~~~~F~~g~~~VLva----T~ 528 (630)
.+...|..++.. ..+++||||+++..++.++..|...|+.+. .+|| +|.+ ++.|++|+.+|||| |+
T Consensus 296 -~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 296 -RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp -CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHH
T ss_pred -CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCC
Confidence 456666666655 248999999999999999999999999998 9999 2555 99999999999999 99
Q ss_pred CcccCCCCCC-ccEEEEeCCCC----------------------------------------------------------
Q 006800 529 VAARGLDIKS-IKSVVNFDIAR---------------------------------------------------------- 549 (630)
Q Consensus 529 ~~~~Gldi~~-v~~VI~~~~p~---------------------------------------------------------- 549 (630)
++++|+|+|+ |++|||||+|.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~ 446 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFR 446 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_pred eeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccc
Confidence 9999999999 99999999998
Q ss_pred --------------CHHHHHHHhhhcccCCC---CCeEEEEEeccccHHHHHHHHHHHHH
Q 006800 550 --------------DMDMHVHRIGRTGRAGD---KDGTAYTLVTQKEARFAGELVNSLIA 592 (630)
Q Consensus 550 --------------~~~~y~QriGR~gR~g~---~~g~~~~l~~~~d~~~~~~l~~~l~~ 592 (630)
++.+|+||+||+||.|. ..|.+++++ .|...+..|.+.+..
T Consensus 447 ~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~ 504 (1104)
T 4ddu_A 447 GVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLL 504 (1104)
T ss_dssp SSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHH
T ss_pred eEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhh
Confidence 78899999999999652 135555555 777888888887764
No 29
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=3.8e-43 Score=389.21 Aligned_cols=323 Identities=20% Similarity=0.244 Sum_probs=230.5
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006800 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 243 ~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
.|. .|+|+|..++|.+++|+ |+.++||+|||++|++|++.+.+. ++.++||+|||+||.|+++++..++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 354 89999999999999998 999999999999999999866532 5679999999999999999999999
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHcc------ccccCceeEEEecchhhhh-cCC------
Q 006800 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DLG------ 388 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~------~~~l~~i~~lVvDEah~~~-~~~------ 388 (630)
..+|+++.+++||.+.. .+.+..+++|+||||++| .+++..+ ...++.+.++||||||+|+ +.+
T Consensus 140 ~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIi 217 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLII 217 (853)
T ss_dssp HHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEE
T ss_pred HhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccc
Confidence 99999999999998764 344555799999999999 7888754 2567899999999999998 543
Q ss_pred ---------cHHHHHHHHhhcCC--------------------CCcEE------------------------EEeecccH
Q 006800 389 ---------FEPQIRSIVGQIRP--------------------DRQTL------------------------LFSATMPR 415 (630)
Q Consensus 389 ---------~~~~v~~i~~~l~~--------------------~~q~l------------------------~~SAT~~~ 415 (630)
|...+..++..+++ .+|++ +||||++.
T Consensus 218 Sg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~ 297 (853)
T 2fsf_A 218 SGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIM 297 (853)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred cCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccch
Confidence 56778888888764 56654 89999764
Q ss_pred HHHHH-----HHHHcC--------CC-----------------------------eEEEEcccccccccceE--------
Q 006800 416 KVEKL-----AREILS--------DP-----------------------------VRVTVGEVGMANEDITQ-------- 445 (630)
Q Consensus 416 ~~~~l-----~~~~~~--------~~-----------------------------~~i~~~~~~~~~~~i~q-------- 445 (630)
-+..+ +..++. ++ ..+.+.........|.+
T Consensus 298 ~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~ 377 (853)
T 2fsf_A 298 LMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYE 377 (853)
T ss_dssp -----------------------------------------------------------CCCCCEEEEEEEHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhh
Confidence 22211 111111 00 11111111111111110
Q ss_pred --------------------------------------EEEEcCCccccHHHHHHhccCC-CCCCCEEEEccchhhHHHH
Q 006800 446 --------------------------------------VVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEI 486 (630)
Q Consensus 446 --------------------------------------~~~~~~~~~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l 486 (630)
...++.....|+..+...+... ....++||||+|+..++.|
T Consensus 378 kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~L 457 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELV 457 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHH
T ss_pred hhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHH
Confidence 0012224456888888877543 2356899999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCc---------------------------
Q 006800 487 ESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI--------------------------- 539 (630)
Q Consensus 487 ~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v--------------------------- 539 (630)
+..|...|+++.++||.+.+.++..+...|+.| .|+|||++++||+||+..
T Consensus 458 s~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (853)
T 2fsf_A 458 SNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQV 535 (853)
T ss_dssp HHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhh
Confidence 999999999999999999888887788888887 699999999999999973
Q ss_pred ----------cEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHH
Q 006800 540 ----------KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (630)
Q Consensus 540 ----------~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~ 581 (630)
.+||+|+.|.|...|.||+||+||.| .+|.+++|++..|..
T Consensus 536 ~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqG-d~G~s~~fls~eD~l 586 (853)
T 2fsf_A 536 RHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQG-DAGSSRFYLSMEDAL 586 (853)
T ss_dssp HHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGG-CCEEEEEEEETTSGG
T ss_pred hhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCC-CCeeEEEEecccHHH
Confidence 69999999999999999999999999 689999999988743
No 30
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.7e-43 Score=417.22 Aligned_cols=320 Identities=20% Similarity=0.293 Sum_probs=261.9
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006800 242 KQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 242 ~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
..||. | |+|.++|+.+++|+|+++++|||||||+ |.+|++.++.. .++++|||+||++||.|+++.+.++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 36999 9 9999999999999999999999999998 89999988754 3788999999999999999999999
Q ss_pred hhhcCc----eEEEEECCCChHHH---HHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHH
Q 006800 322 AKSHGI----RVSAVYGGMSKLDQ---FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (630)
Q Consensus 322 ~~~~~~----~~~~~~gg~~~~~~---~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~ 394 (630)
+...++ ++.+++||.+...+ ...+.. ++|+|+||++|.+++.. ++++++|||||||+|++ |...+.
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHH
Confidence 988888 89999999887763 344455 99999999999987764 67899999999999998 467788
Q ss_pred HHHhhc-----------CCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHh
Q 006800 395 SIVGQI-----------RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (630)
Q Consensus 395 ~i~~~l-----------~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~ 463 (630)
.++..+ +..+|+++||||+++. ..++..++.++..+.+.........+.+.+. ...+...|..+
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~----~~~k~~~L~~l 270 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV----NDESISTLSSI 270 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE----SCCCTTTTHHH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe----chhHHHHHHHH
Confidence 887766 3568999999999887 5444444444444444444444455666554 24566666666
Q ss_pred ccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEE----cCCcccCCCCCCc
Q 006800 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA----TDVAARGLDIKSI 539 (630)
Q Consensus 464 l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLva----T~~~~~Gldi~~v 539 (630)
+... .+++||||+++..++.++..|... +.+..+||++ ..+++.|++|+.+|||| |+++++|||+|+|
T Consensus 271 l~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~V 342 (1054)
T 1gku_B 271 LEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPER 342 (1054)
T ss_dssp HTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTT
T ss_pred Hhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCc
Confidence 6654 578999999999999999999988 9999999998 37889999999999999 9999999999995
Q ss_pred -cEEEEeCCC----------------------------------------------------------------------
Q 006800 540 -KSVVNFDIA---------------------------------------------------------------------- 548 (630)
Q Consensus 540 -~~VI~~~~p---------------------------------------------------------------------- 548 (630)
++||+||+|
T Consensus 343 I~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 422 (1054)
T 1gku_B 343 IRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVI 422 (1054)
T ss_dssp CCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEE
T ss_pred ccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeeccee
Confidence 999999999
Q ss_pred -CCHHHHHHHhhhcccCCCCCe--EEEEEeccccHHHHHHHHHHHHH
Q 006800 549 -RDMDMHVHRIGRTGRAGDKDG--TAYTLVTQKEARFAGELVNSLIA 592 (630)
Q Consensus 549 -~~~~~y~QriGR~gR~g~~~g--~~~~l~~~~d~~~~~~l~~~l~~ 592 (630)
.++..|+||+||+||.| ..| .+++|+...+...+..|.+.+..
T Consensus 423 ~~~~~~yiQr~GRagR~g-~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 423 FPDLRTYIQGSGRTSRLF-AGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EECHHHHHHHHHTTCCEE-TTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cCcHHHHhhhhchhhhcc-CCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987 344 47888888888888888888875
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.2e-42 Score=374.85 Aligned_cols=323 Identities=21% Similarity=0.242 Sum_probs=252.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006800 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|+|+|.++++.++.+ ++++++|||+|||++++++++.++. ..++++|||+||++|+.||.+++.+++...+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-------KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-------HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-------cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 6999999999999999 9999999999999999999888764 2367799999999999999999999974334
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcE
Q 006800 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~ 406 (630)
.++..++|+...... ..+..+++|+|+||+.|...+......+..+++|||||||++.+......+...+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 588888887766543 3444568999999999999988777778899999999999988665556666666666778999
Q ss_pred EEEeecccHH---HHHHHHHHcCCCeEEEEccccc----ccccceEEEE-E-----------------------------
Q 006800 407 LLFSATMPRK---VEKLAREILSDPVRVTVGEVGM----ANEDITQVVH-V----------------------------- 449 (630)
Q Consensus 407 l~~SAT~~~~---~~~l~~~~~~~~~~i~~~~~~~----~~~~i~q~~~-~----------------------------- 449 (630)
+++|||+... +..++..+...+..+....... .......... .
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999743 4444443322111110000000 0000000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 006800 450 -------------------------------------------------------------------------------- 449 (630)
Q Consensus 450 -------------------------------------------------------------------------------- 449 (630)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred ------------------cCCccccHHHHHHhccCC---CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeC------
Q 006800 450 ------------------IPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG------ 502 (630)
Q Consensus 450 ------------------~~~~~~k~~~l~~~l~~~---~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg------ 502 (630)
......|...|.+.+... ...+++||||+++..++.++..|...++.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 002234555666666553 25679999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccH
Q 006800 503 --DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (630)
Q Consensus 503 --~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~ 580 (630)
++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+|+..|+||+||+||.|+ |.++.|+++.+.
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~--g~~~~l~~~~t~ 477 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP--GRVIILMAKGTR 477 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC--SEEEEEEETTSH
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC--ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999993 999999998754
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.9e-42 Score=404.90 Aligned_cols=331 Identities=21% Similarity=0.216 Sum_probs=213.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006800 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
++..|+|+|.++++.+++|+++++++|||+|||++|++|++.++...+ ...++++|||+||++|+.||+.++.+++.
T Consensus 245 ~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 567899999999999999999999999999999999999988775432 23367799999999999999999999998
Q ss_pred hcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc-ccCceeEEEecchhhhhcCCcHHH-HHHHHhh--
Q 006800 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQ-IRSIVGQ-- 399 (630)
Q Consensus 324 ~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~l~~i~~lVvDEah~~~~~~~~~~-v~~i~~~-- 399 (630)
..++++..++|+.....+...+..+++|+|+||++|.+.+..... .+..+++|||||||++...+.... +..++..
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 889999999999877776667777899999999999999987766 688999999999999887653222 2222222
Q ss_pred --cCCCCcEEEEeecccH-----------HHHHHHHH------------------HcCCCeEEEEcccccccc-------
Q 006800 400 --IRPDRQTLLFSATMPR-----------KVEKLARE------------------ILSDPVRVTVGEVGMANE------- 441 (630)
Q Consensus 400 --l~~~~q~l~~SAT~~~-----------~~~~l~~~------------------~~~~~~~i~~~~~~~~~~------- 441 (630)
..+..|+++||||+.. .+..+... ++..|.............
T Consensus 402 ~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~ 481 (936)
T 4a2w_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (936)
T ss_dssp TTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHH
Confidence 1566899999999952 22222211 222222221110000000
Q ss_pred -----------cc------eEEE-EE------------------------------------------------------
Q 006800 442 -----------DI------TQVV-HV------------------------------------------------------ 449 (630)
Q Consensus 442 -----------~i------~q~~-~~------------------------------------------------------ 449 (630)
.+ .+.. ..
T Consensus 482 ~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~ 561 (936)
T 4a2w_A 482 NLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (936)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 00 0000 00
Q ss_pred ----------------------------------------------cCCccccHHHHHHhccCC---CCCCCEEEEccch
Q 006800 450 ----------------------------------------------IPSDAEKLPWLLEKLPGM---IDDGDVLVFASKK 480 (630)
Q Consensus 450 ----------------------------------------------~~~~~~k~~~l~~~l~~~---~~~~~iLIF~~s~ 480 (630)
......|...|...|... ...+++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~ 641 (936)
T 4a2w_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (936)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCH
Confidence 000133555555555443 2457999999999
Q ss_pred hhHHHHHHHHHhC------------CCcEEEEeCCCCHHHHHHHHHHhhc-CCceEEEEcCCcccCCCCCCccEEEEeCC
Q 006800 481 TTVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFDI 547 (630)
Q Consensus 481 ~~~~~l~~~L~~~------------~~~~~~ihg~~~~~~r~~~~~~F~~-g~~~VLvaT~~~~~Gldi~~v~~VI~~~~ 547 (630)
..++.++.+|... |..+..+||+|++.+|.++++.|++ |+++|||||+++++|||+|++++||+||+
T Consensus 642 ~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp HHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC
T ss_pred HHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC
Confidence 9999999999986 5666777999999999999999999 99999999999999999999999999999
Q ss_pred CCCHHHHHHHhhhcccCCCCCeEEEEEeccccH
Q 006800 548 ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (630)
Q Consensus 548 p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~ 580 (630)
|+|+..|+||+|| ||.. .|.+++|++..+.
T Consensus 722 p~s~~~~iQr~GR-GR~~--~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 722 SGNVTKMIQVRGR-GRAA--GSKCILVTSKTEV 751 (936)
T ss_dssp CSCSHHHHCC----------CCCEEEEESCHHH
T ss_pred CCCHHHHHHhcCC-CCCC--CCEEEEEEeCCCH
Confidence 9999999999999 9984 7999999988654
No 33
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-41 Score=397.63 Aligned_cols=318 Identities=19% Similarity=0.229 Sum_probs=254.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006800 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
+| .|+|+|.++++.+++|+++++++|||||||++|.++++..+. .++++||++||++|+.|++..+.+++.
T Consensus 84 ~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--------~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 84 PF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--------TTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--------cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 45 499999999999999999999999999999999998887762 367899999999999999999998864
Q ss_pred hcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCC
Q 006800 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (630)
Q Consensus 324 ~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~ 403 (630)
.+..++|+.... .+++|+|+||++|..++.+....+.++++|||||||+|.++++...+..++..+++.
T Consensus 155 ----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 ----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp ----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred ----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 677788876543 248999999999999988877788999999999999999999999999999999999
Q ss_pred CcEEEEeecccHHHHHHHHH---HcCCCeEEEEcccccccccceEEEEEcC---------Cc------------------
Q 006800 404 RQTLLFSATMPRKVEKLARE---ILSDPVRVTVGEVGMANEDITQVVHVIP---------SD------------------ 453 (630)
Q Consensus 404 ~q~l~~SAT~~~~~~~l~~~---~~~~~~~i~~~~~~~~~~~i~q~~~~~~---------~~------------------ 453 (630)
.|+|+||||+++.. .++.+ ....+..+...... ...+.+.+.... ..
T Consensus 224 ~~il~LSATi~n~~-e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 224 VRYVFLSATIPNAM-EFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp CEEEEEECCCTTHH-HHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred CeEEEEcCCCCCHH-HHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh
Confidence 99999999998753 34443 34556555443221 122222222111 00
Q ss_pred ---------------------------cccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCC-----------
Q 006800 454 ---------------------------AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGF----------- 495 (630)
Q Consensus 454 ---------------------------~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~----------- 495 (630)
...+..++..+... ..+++||||+++..|+.++..|...++
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 379 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 379 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 11122233333221 235899999999999999999976543
Q ss_pred ----------------------------cEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEE---
Q 006800 496 ----------------------------KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--- 544 (630)
Q Consensus 496 ----------------------------~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~--- 544 (630)
.++.+||++++.+|..++..|++|.++|||||+++++|||+|++++||+
T Consensus 380 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~ 459 (1010)
T 2xgj_A 380 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 459 (1010)
T ss_dssp HHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSE
T ss_pred HHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCc
Confidence 2889999999999999999999999999999999999999999999999
Q ss_pred -eCC----CCCHHHHHHHhhhcccCCC-CCeEEEEEeccc-cHHHHHH
Q 006800 545 -FDI----ARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQK-EARFAGE 585 (630)
Q Consensus 545 -~~~----p~~~~~y~QriGR~gR~g~-~~g~~~~l~~~~-d~~~~~~ 585 (630)
||. |.++..|+||+||+||.|. ..|.|++|+++. +...+.+
T Consensus 460 kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~ 507 (1010)
T 2xgj_A 460 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 507 (1010)
T ss_dssp EECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHH
T ss_pred ccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHH
Confidence 999 8999999999999999993 369999999865 4333333
No 34
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=2e-41 Score=375.69 Aligned_cols=347 Identities=19% Similarity=0.254 Sum_probs=265.7
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006800 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 243 ~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
.|+ .|+|+|..++|.+++|+ |+.++||+|||++|++|++.+.+. |+.++||+||++||.|+++++..++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 587 99999999999999998 999999999999999999766542 4569999999999999999999999
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHcc------ccccCceeEEEecchhhhh-c--------
Q 006800 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-D-------- 386 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~------~~~l~~i~~lVvDEah~~~-~-------- 386 (630)
..+|+++.+++||.+... +....+|+|+|+||++| .++|..+ ...++.+.++||||||+|+ +
T Consensus 177 ~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLii 254 (922)
T 1nkt_A 177 RFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLII 254 (922)
T ss_dssp HHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEE
T ss_pred hhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceee
Confidence 999999999999987543 33444699999999999 7887654 3567889999999999998 4
Q ss_pred -------CCcHHHHHHHHhhcC---------CCCcEE-----------------EEeecccH---HHHHHH--HHHcC-C
Q 006800 387 -------LGFEPQIRSIVGQIR---------PDRQTL-----------------LFSATMPR---KVEKLA--REILS-D 427 (630)
Q Consensus 387 -------~~~~~~v~~i~~~l~---------~~~q~l-----------------~~SAT~~~---~~~~l~--~~~~~-~ 427 (630)
++|...+..++..++ +.+|++ +||||++. .+...+ ..++. +
T Consensus 255 Sg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d 334 (922)
T 1nkt_A 255 SGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRD 334 (922)
T ss_dssp EEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBT
T ss_pred cCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcc
Confidence 357789999999997 678998 89999864 333322 22222 1
Q ss_pred -------CeEEEEccc-c---------------------c-------ccccce---------------------------
Q 006800 428 -------PVRVTVGEV-G---------------------M-------ANEDIT--------------------------- 444 (630)
Q Consensus 428 -------~~~i~~~~~-~---------------------~-------~~~~i~--------------------------- 444 (630)
...+.+... + . ....|.
T Consensus 335 ~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~ 414 (922)
T 1nkt_A 335 KDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHE 414 (922)
T ss_dssp TTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred cceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHH
Confidence 111111110 0 0 000000
Q ss_pred -------------------EEEEEcCCccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCC
Q 006800 445 -------------------QVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (630)
Q Consensus 445 -------------------q~~~~~~~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~ 504 (630)
+...++.....|+..++..+.... ...++||||+|+..++.|+..|...|+++.+|||.+
T Consensus 415 iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~ 494 (922)
T 1nkt_A 415 IYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKY 494 (922)
T ss_dssp HHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred HhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCCh
Confidence 000112234567777877775432 345899999999999999999999999999999998
Q ss_pred CHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCc---------------------------------------------
Q 006800 505 DQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI--------------------------------------------- 539 (630)
Q Consensus 505 ~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v--------------------------------------------- 539 (630)
.+.++..+...|+.| .|+|||++++||+||+.+
T Consensus 495 ~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (922)
T 1nkt_A 495 HEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAK 572 (922)
T ss_dssp HHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhh
Confidence 777776677777776 699999999999999975
Q ss_pred -------cEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHH----HHHHHHHHHcC----CCCCHHHHHH
Q 006800 540 -------KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA----GELVNSLIAAG----QNVSMELMDL 604 (630)
Q Consensus 540 -------~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~----~~l~~~l~~~~----~~vp~~L~~l 604 (630)
.+||+|+.|.|...|.||+||+||.| .+|.+++|++..|...- .++...+...+ ..+...+..-
T Consensus 573 ~V~~~GGlhVI~te~pes~riy~qr~GRTGRqG-dpG~s~fflSleD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~ 651 (922)
T 1nkt_A 573 EVIEAGGLYVLGTERHESRRIDNQLRGRSGRQG-DPGESRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPIEAKMVTR 651 (922)
T ss_dssp HHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGG-CCEEEEEEEETTSHHHHHTTHHHHHHHHHHTTCCTTSCCCCHHHHH
T ss_pred HHHhcCCcEEEeccCCCCHHHHHHHhcccccCC-CCeeEEEEechhHHHHHHhhhHHHHHHHHHhCCCCCcccccHHHHH
Confidence 59999999999999999999999999 68999999998885332 34445554433 3444444433
Q ss_pred H
Q 006800 605 A 605 (630)
Q Consensus 605 a 605 (630)
+
T Consensus 652 ~ 652 (922)
T 1nkt_A 652 A 652 (922)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.2e-40 Score=329.03 Aligned_cols=239 Identities=47% Similarity=0.832 Sum_probs=223.2
Q ss_pred CCCHHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHH
Q 006800 198 GMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTA 277 (630)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~ 277 (630)
.++++++..+++...+.+.|...|.|+.+|.++++++.+++.+.+.||..|+|+|.++++.+++|+++++++|||||||+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~ 81 (242)
T 3fe2_A 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTL 81 (242)
T ss_dssp ----CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChH
Q 006800 278 AFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPG 357 (630)
Q Consensus 278 ~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~ 357 (630)
+|++|++.++...+......++++|||+||++|+.|+++.+.+++...++++..++||.....+...+..+++|+|+||+
T Consensus 82 ~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~ 161 (242)
T 3fe2_A 82 SYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 161 (242)
T ss_dssp HHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHH
T ss_pred HHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHH
Confidence 99999999998766555567899999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEccc
Q 006800 358 RLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV 436 (630)
Q Consensus 358 ~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~ 436 (630)
+|.+++......+.++++|||||||+|.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|+.+.++..
T Consensus 162 ~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 162 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999998888889999999999999999999999999999999999999999999999999999999999999987653
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3.5e-42 Score=394.42 Aligned_cols=325 Identities=23% Similarity=0.298 Sum_probs=227.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHH-HHHHHHHhhh
Q 006800 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-YLETKKFAKS 324 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~-~~~~~~~~~~ 324 (630)
..|+|+|.++++.++.|+++|+++|||+|||++|++|++.++...+. .+.++++|||+||++|+.|| ++++.+++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 47999999999999999999999999999999999999988765321 12346799999999999999 9999999864
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHH------HccccccCceeEEEecchhhhhcCCcH-HHHHHHH
Q 006800 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML------KMKALTMSRVTYLVLDEADRMFDLGFE-PQIRSIV 397 (630)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l------~~~~~~l~~i~~lVvDEah~~~~~~~~-~~v~~i~ 397 (630)
++++..++|+......+..+..+++|+|+||++|...+ ......+..+++|||||||++....+. ..+..++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 48999999998777666777788999999999999888 444567789999999999998654322 2222222
Q ss_pred hh----cC---------CCCcEEEEeecccHH-----------HHHHHHHHc------------------CCCeEEEEcc
Q 006800 398 GQ----IR---------PDRQTLLFSATMPRK-----------VEKLAREIL------------------SDPVRVTVGE 435 (630)
Q Consensus 398 ~~----l~---------~~~q~l~~SAT~~~~-----------~~~l~~~~~------------------~~~~~i~~~~ 435 (630)
.. .. +..|+|+||||++.. +..+...+- ..|.......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 21 12 678999999999861 222222221 1121111000
Q ss_pred cccccc-----------------cc---e---------------------------------------------------
Q 006800 436 VGMANE-----------------DI---T--------------------------------------------------- 444 (630)
Q Consensus 436 ~~~~~~-----------------~i---~--------------------------------------------------- 444 (630)
...... .+ .
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 0
Q ss_pred -----------------------EEEEEc-------------------------CCccccHHHHHHhccCCC---C-CCC
Q 006800 445 -----------------------QVVHVI-------------------------PSDAEKLPWLLEKLPGMI---D-DGD 472 (630)
Q Consensus 445 -----------------------q~~~~~-------------------------~~~~~k~~~l~~~l~~~~---~-~~~ 472 (630)
.....+ .....|...|...|.... . .++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 000000 001122222223332211 2 679
Q ss_pred EEEEccchhhHHHHHHHHHhC------CCcEEEEeCC--------CCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCC
Q 006800 473 VLVFASKKTTVDEIESQLAQK------GFKAAALHGD--------KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (630)
Q Consensus 473 iLIF~~s~~~~~~l~~~L~~~------~~~~~~ihg~--------~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~ 538 (630)
+||||+++..++.++.+|... |+.+..+||+ |++.+|.++++.|++|+++|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEecc
Q 006800 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (630)
Q Consensus 539 v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~ 577 (630)
+++||+||+|+|+..|+||+||+||.| .+++++..
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~ 517 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAH 517 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEe
Confidence 999999999999999999999976544 44444443
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.4e-40 Score=398.63 Aligned_cols=346 Identities=15% Similarity=0.204 Sum_probs=267.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHH
Q 006800 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (630)
Q Consensus 231 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g-~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~ 309 (630)
.|.....+.+...+|..|+|+|.++++.++.+ ++++++||||||||++|.+|++.++... ++.++|||+||++
T Consensus 910 ~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~ra 983 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEA 983 (1724)
T ss_dssp GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHH
T ss_pred cccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHH
Confidence 35567788888889999999999999999855 6899999999999999999999998754 3667999999999
Q ss_pred HHHHHHHHHHH-HhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc--cccccCceeEEEecchhhhhc
Q 006800 310 LAHQIYLETKK-FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFD 386 (630)
Q Consensus 310 La~Q~~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~--~~~~l~~i~~lVvDEah~~~~ 386 (630)
||.|++..|.+ |....|+++..++|+..... ....+++|+||||+++..++++ ....++++++||+||+|.|.+
T Consensus 984 La~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~---~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 984 LAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH---HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHHhchhcCCEEEEEECCCCcch---hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC
Confidence 99999999976 45557899998888754322 2334589999999999887765 234578999999999998876
Q ss_pred CCcHHHHHHHHh-------hcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCcccc---
Q 006800 387 LGFEPQIRSIVG-------QIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK--- 456 (630)
Q Consensus 387 ~~~~~~v~~i~~-------~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k--- 456 (630)
. .+..+..++. .+++..|+|+||||+++ ...++.++...+..+...........+...+..+......
T Consensus 1061 ~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~ 1138 (1724)
T 4f92_B 1061 E-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRL 1138 (1724)
T ss_dssp T-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHH
T ss_pred C-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhh
Confidence 4 5655554443 44678999999999985 4778888765543333333333344444444444332211
Q ss_pred ---HHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC----------------------------------CCcEEE
Q 006800 457 ---LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----------------------------------GFKAAA 499 (630)
Q Consensus 457 ---~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~----------------------------------~~~~~~ 499 (630)
...+...+......+++||||+++..|+.++..|... ...++.
T Consensus 1139 ~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1139 LSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp HTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 1222333444445779999999999999888776431 235899
Q ss_pred EeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEE----eC------CCCCHHHHHHHhhhcccCC-CCC
Q 006800 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD------IARDMDMHVHRIGRTGRAG-DKD 568 (630)
Q Consensus 500 ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~~------~p~~~~~y~QriGR~gR~g-~~~ 568 (630)
+||+|++.+|..+.+.|++|.++|||||+++++|+|+|...+||. |+ .|.++.+|+||+||+||.| +..
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 1298 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE 1298 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc
Confidence 999999999999999999999999999999999999999888883 32 3678999999999999999 457
Q ss_pred eEEEEEeccccHHHHHHHH
Q 006800 569 GTAYTLVTQKEARFAGELV 587 (630)
Q Consensus 569 g~~~~l~~~~d~~~~~~l~ 587 (630)
|.|++++...+..+...++
T Consensus 1299 G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1299 GRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp EEEEEEEEGGGHHHHHHHT
T ss_pred eEEEEEecchHHHHHHHHh
Confidence 9999999988877665543
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.9e-40 Score=387.80 Aligned_cols=308 Identities=20% Similarity=0.231 Sum_probs=246.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006800 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|+|+|.++++.+++|+++++++|||||||++|++++...+. .++++||++||++|+.|+++.+.+++. +
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~--------~g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR--------NMTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH--------TTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 589999999999999999999999999999999998877642 367899999999999999999998765 6
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcE
Q 006800 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~ 406 (630)
+.+..++|+.... ..++|+|+||++|..++......+..+++|||||||++.++++...+..++..+++..|+
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 7888888887643 348999999999999998877778999999999999999999999999999999999999
Q ss_pred EEEeecccHHHHHHHHHHcC---CCeEEEEcccccccccceEEE------------------------------------
Q 006800 407 LLFSATMPRKVEKLAREILS---DPVRVTVGEVGMANEDITQVV------------------------------------ 447 (630)
Q Consensus 407 l~~SAT~~~~~~~l~~~~~~---~~~~i~~~~~~~~~~~i~q~~------------------------------------ 447 (630)
|++|||+++.. .++.++.. .+..+..... ....+.+.+
T Consensus 182 IlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~--r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (997)
T 4a4z_A 182 ILLSATVPNTY-EFANWIGRTKQKNIYVISTPK--RPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGA 258 (997)
T ss_dssp EEEECCCTTHH-HHHHHHHHHHTCCEEEEECSS--CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------
T ss_pred EEEcCCCCChH-HHHHHHhcccCCceEEEecCC--CCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccc
Confidence 99999998653 45555431 2222211110 000111000
Q ss_pred --------------------------------------------------------EEcCCccccHHHHHHhccCCCCCC
Q 006800 448 --------------------------------------------------------HVIPSDAEKLPWLLEKLPGMIDDG 471 (630)
Q Consensus 448 --------------------------------------------------------~~~~~~~~k~~~l~~~l~~~~~~~ 471 (630)
........++..++..+... ..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~~ 337 (997)
T 4a4z_A 259 PSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-ELL 337 (997)
T ss_dssp ----------------------------------------------------------CCCCTTHHHHHHHHHHHT-TCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CCC
Confidence 00001122344555555443 346
Q ss_pred CEEEEccchhhHHHHHHHHHhCCC---------------------------------------cEEEEeCCCCHHHHHHH
Q 006800 472 DVLVFASKKTTVDEIESQLAQKGF---------------------------------------KAAALHGDKDQASRMEI 512 (630)
Q Consensus 472 ~iLIF~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~ihg~~~~~~r~~~ 512 (630)
++||||+++..|+.++..|...++ .+..+||++++.+|..+
T Consensus 338 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v 417 (997)
T 4a4z_A 338 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELI 417 (997)
T ss_dssp SEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHH
Confidence 999999999999999999977655 58999999999999999
Q ss_pred HHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCC---------CHHHHHHHhhhcccCC-CCCeEEEEEec
Q 006800 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR---------DMDMHVHRIGRTGRAG-DKDGTAYTLVT 576 (630)
Q Consensus 513 ~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~---------~~~~y~QriGR~gR~g-~~~g~~~~l~~ 576 (630)
+..|.+|.++|||||+++++|||+|+ ..||+++.|. ++..|+||+||+||.| +..|.|++++.
T Consensus 418 ~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 418 EILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 99999999999999999999999999 7777766665 9999999999999998 56799998884
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.5e-41 Score=378.71 Aligned_cols=332 Identities=20% Similarity=0.252 Sum_probs=248.1
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcC------CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccH
Q 006800 235 QLMHAISKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (630)
Q Consensus 235 ~l~~~l~~~~~~~~~~~Q~~~i~~il~g------~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr 308 (630)
.+...+...+| .||++|.++++.++++ .+++++++||||||++|++|++..+.. +++++|++||+
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPtr 427 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPTS 427 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSCH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcH
Confidence 34455567798 8999999999999875 599999999999999999999988642 67899999999
Q ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---HHHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchhhh
Q 006800 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (630)
Q Consensus 309 ~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~ 384 (630)
+||.|+++.+.+++...++++..++|+.+.... +..+..| ++|+|+||+.|.+ ...+.++++|||||+|++
T Consensus 428 ~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 428 ILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchh
Confidence 999999999999998889999999999876653 3445554 9999999987744 446789999999999995
Q ss_pred hcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhc
Q 006800 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (630)
Q Consensus 385 ~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l 464 (630)
.... ...+.......|+++||||+.+.... ..++.+.....+.........+...+ + ...+...+...+
T Consensus 503 g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~--~~~~g~~~~s~i~~~p~~r~~i~~~~--~--~~~~~~~l~~~i 571 (780)
T 1gm5_A 503 GVKQ-----REALMNKGKMVDTLVMSATPIPRSMA--LAFYGDLDVTVIDEMPPGRKEVQTML--V--PMDRVNEVYEFV 571 (780)
T ss_dssp ----------CCCCSSSSCCCEEEEESSCCCHHHH--HHHTCCSSCEEECCCCSSCCCCEECC--C--CSSTHHHHHHHH
T ss_pred hHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHH--HHHhCCcceeeeeccCCCCcceEEEE--e--ccchHHHHHHHH
Confidence 3221 22223334578999999998775433 33344432222222211122222211 1 223444455544
Q ss_pred cCC-CCCCCEEEEccch--------hhHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q 006800 465 PGM-IDDGDVLVFASKK--------TTVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (630)
Q Consensus 465 ~~~-~~~~~iLIF~~s~--------~~~~~l~~~L~~---~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~ 532 (630)
... ...++++|||++. ..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~ 651 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEV 651 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCS
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCc
Confidence 432 2456899999966 457888888887 4789999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEeCCCC-CHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHc
Q 006800 533 GLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA 593 (630)
Q Consensus 533 Gldi~~v~~VI~~~~p~-~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~ 593 (630)
|+|+|++++||++++|. +...|.||+||+||.| ..|.|++++++.+.. ..+.++.+...
T Consensus 652 GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g-~~g~~ill~~~~~~~-~~~rl~~l~~~ 711 (780)
T 1gm5_A 652 GIDVPRANVMVIENPERFGLAQLHQLRGRVGRGG-QEAYCFLVVGDVGEE-AMERLRFFTLN 711 (780)
T ss_dssp CSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSS-TTCEEECCCCSCCHH-HHHHHHHHHTC
T ss_pred cccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCC-CCCEEEEEECCCChH-HHHHHHHHHhh
Confidence 99999999999999996 7889999999999998 679999999854433 23333445443
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=6.4e-39 Score=380.28 Aligned_cols=324 Identities=18% Similarity=0.227 Sum_probs=254.0
Q ss_pred CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHc----CC--CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEE
Q 006800 230 CGFSTQLMHAISK-QGYEKPTSIQCQALPIILS----GR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (630)
Q Consensus 230 ~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~----g~--d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (630)
++++..+.+.+.. .+| .|||+|.++++.++. |+ +++++++||+|||++|+++++..+. .+++++
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEE
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEE
Confidence 3456666666654 466 479999999999886 66 9999999999999999988887653 367899
Q ss_pred EEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---HHHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEe
Q 006800 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (630)
Q Consensus 303 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVv 378 (630)
||+||++||.|+++.+.+++...++++..+.+..+.... +..+..| ++|+|+||+.|. ....+.++++|||
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 731 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEE
Confidence 999999999999999999888778899888877665443 3445554 999999997653 3456789999999
Q ss_pred cchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHH
Q 006800 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (630)
Q Consensus 379 DEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (630)
||||++ ......++..++...++++||||+++....++...+.++..+. ........+...+.... +..
T Consensus 732 DEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~--~~~~~r~~i~~~~~~~~----~~~ 800 (1151)
T 2eyq_A 732 DEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA--TPPARRLAVKTFVREYD----SMV 800 (1151)
T ss_dssp ESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECC--CCCCBCBCEEEEEEECC----HHH
T ss_pred echHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEe--cCCCCccccEEEEecCC----HHH
Confidence 999993 3345666777778899999999998776666555444432221 11122223333333221 112
Q ss_pred HHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q 006800 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (630)
Q Consensus 459 ~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi 536 (630)
.....+.....+++++|||+++..++.++..|... ++.+..+||+|++.+|..++..|++|+++|||||+++++|+|+
T Consensus 801 i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 801 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 22222222335689999999999999999999987 8899999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCC-CCCHHHHHHHhhhcccCCCCCeEEEEEecccc
Q 006800 537 KSIKSVVNFDI-ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (630)
Q Consensus 537 ~~v~~VI~~~~-p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d 579 (630)
|++++||+++. ++++..|.||+||+||.| +.|.|++++++.+
T Consensus 881 p~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g-~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 881 PTANTIIIERADHFGLAQLHQLRGRVGRSH-HQAYAWLLTPHPK 923 (1151)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTT-BCEEEEEEECCGG
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhccCcCC-CceEEEEEECCcc
Confidence 99999999998 579999999999999999 5799999987654
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.3e-39 Score=392.89 Aligned_cols=338 Identities=19% Similarity=0.270 Sum_probs=260.5
Q ss_pred CCCCCcHHHHHHHHHHH-cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcc---cccCCCeEEEEcccHHHHHHHHHHHH
Q 006800 244 GYEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL---QKEEGPIGVICAPTRELAHQIYLETK 319 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il-~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~---~~~~~~~vLil~Ptr~La~Q~~~~~~ 319 (630)
||..|+++|++++|.++ +++|++++||||||||++|.++++..+...... ...++.++|||+|+++||.|++..+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78999999999999987 578999999999999999999999998764321 23457889999999999999999999
Q ss_pred HHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccc--cccCceeEEEecchhhhhcCCcHHHHHHHH
Q 006800 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA--LTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (630)
Q Consensus 320 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~--~~l~~i~~lVvDEah~~~~~~~~~~v~~i~ 397 (630)
+.+...|+++..++|+...... ...+++|+||||+++..++.+.. ..++.+++|||||+|.+.+ ..+..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 9988899999999998765332 13458999999999977665432 3478899999999997765 5666666554
Q ss_pred h-------hcCCCCcEEEEeecccHHHHHHHHHHcCCCe-EEEEcccccccccceEEEEEcCCcc--ccH----HHHHHh
Q 006800 398 G-------QIRPDRQTLLFSATMPRKVEKLAREILSDPV-RVTVGEVGMANEDITQVVHVIPSDA--EKL----PWLLEK 463 (630)
Q Consensus 398 ~-------~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~i~q~~~~~~~~~--~k~----~~l~~~ 463 (630)
. .+++..|+|++|||+|+ .++++.++..++. .+...........+.+.+..+.... .+. ..+...
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 4 45678999999999985 5677776654421 1111122222334444443332211 111 223444
Q ss_pred ccCCCCCCCEEEEccchhhHHHHHHHHHhC-------------------------------------CCcEEEEeCCCCH
Q 006800 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQK-------------------------------------GFKAAALHGDKDQ 506 (630)
Q Consensus 464 l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~ihg~~~~ 506 (630)
+......+++||||+++..|+.++..|... ...++++||+|++
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 555556779999999999999998887541 2358999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEE----eCC------CCCHHHHHHHhhhcccCC-CCCeEEEEEe
Q 006800 507 ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FDI------ARDMDMHVHRIGRTGRAG-DKDGTAYTLV 575 (630)
Q Consensus 507 ~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~~~------p~~~~~y~QriGR~gR~g-~~~g~~~~l~ 575 (630)
.+|..+.+.|++|.++|||||+++++|+|+|.+++||. |++ |.++.+|.||+|||||.| +..|.++++.
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 99999999999999999999999999999999998884 554 458999999999999998 5679999999
Q ss_pred ccccHHHHHHH
Q 006800 576 TQKEARFAGEL 586 (630)
Q Consensus 576 ~~~d~~~~~~l 586 (630)
+..+......+
T Consensus 471 ~~~~~~~~~~l 481 (1724)
T 4f92_B 471 SHGELQYYLSL 481 (1724)
T ss_dssp ESTTCCHHHHH
T ss_pred cchhHHHHHHH
Confidence 88776555444
No 42
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.4e-41 Score=376.96 Aligned_cols=326 Identities=16% Similarity=0.162 Sum_probs=243.4
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHH
Q 006800 230 CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (630)
Q Consensus 230 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~ 309 (630)
+++++.+++.|... ...++|+|+++++.+++|+++++++|||||||++|++|++.++.. .++++|||+|||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 34555554444332 477889988899999999999999999999999999999998865 3678999999999
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCc
Q 006800 310 LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF 389 (630)
Q Consensus 310 La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~ 389 (630)
||.|+++.+. ++.+. +.+.... .....+..+.++|.+.|...+... ..+.++++|||||||+| +.++
T Consensus 227 La~Qi~~~l~------~~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~ 293 (618)
T 2whx_A 227 VAAEMEEALR------GLPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCS 293 (618)
T ss_dssp HHHHHHHHTT------TSCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHH
T ss_pred HHHHHHHHhc------CCcee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccH
Confidence 9999987765 23333 1111100 000123567778888877655444 35789999999999997 6677
Q ss_pred HHHHHHHHhhcC-CCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCC
Q 006800 390 EPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI 468 (630)
Q Consensus 390 ~~~v~~i~~~l~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~ 468 (630)
...+..++..+. +.+|+++||||++..+..++. .++..+.+... ++. .+...++..+..
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~--~~~~~ll~~l~~-- 353 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPE--RSWNTGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCS--SCCSSSCHHHHH--
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCH--HHHHHHHHHHHh--
Confidence 778888887775 789999999999876443222 23333322211 111 111112222222
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEE------
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV------ 542 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~V------ 542 (630)
..+++||||+++..++.++..|...++.+..+||. +|.++++.|++|+.+|||||+++++|+|++ +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 25799999999999999999999999999999984 688899999999999999999999999997 9888
Q ss_pred --------------EEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEec---cccHHHHHHHHHHHHHcCCCCCHHH
Q 006800 543 --------------VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT---QKEARFAGELVNSLIAAGQNVSMEL 601 (630)
Q Consensus 543 --------------I~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~---~~d~~~~~~l~~~l~~~~~~vp~~L 601 (630)
|+|++|.+...|+||+||+||.|...|.+++|++ +.+...+..+.+.+...+..+|..+
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~~ 504 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 504 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcch
Confidence 7788899999999999999999856899999998 7888888888888777676666543
No 43
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.7e-40 Score=362.82 Aligned_cols=312 Identities=17% Similarity=0.148 Sum_probs=233.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006800 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
..|+|+|.++++.++++++++++++||+|||++|+++++..+.. .++++|||+||++|+.||++.+.++....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-------CSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 47999999999999999999999999999999999988877642 24589999999999999999999986555
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCc
Q 006800 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (630)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q 405 (630)
+..+..++|+.....+ +..+++|+|+||+.|.. .....+.++++|||||||++.. ..+..++..+.+..+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 6788888888776544 44568999999997643 2334577899999999999764 567788888888899
Q ss_pred EEEEeecccHHHHHHHH-HHcCCCeEEEEcccc------cccccceEEEEEcCC--------------------ccccHH
Q 006800 406 TLLFSATMPRKVEKLAR-EILSDPVRVTVGEVG------MANEDITQVVHVIPS--------------------DAEKLP 458 (630)
Q Consensus 406 ~l~~SAT~~~~~~~l~~-~~~~~~~~i~~~~~~------~~~~~i~q~~~~~~~--------------------~~~k~~ 458 (630)
+++||||+++....+.. ..+..+..+.+.... .....+.......+. ...+..
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99999999766432211 111222222111110 001111111111110 111223
Q ss_pred HHHHhccCCC-CCC-CEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEc-CCcccCCC
Q 006800 459 WLLEKLPGMI-DDG-DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-DVAARGLD 535 (630)
Q Consensus 459 ~l~~~l~~~~-~~~-~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT-~~~~~Gld 535 (630)
.+...+.... ..+ ++||||+ ...+..+++.|...+..+..+||++++.+|.++++.|++|+.+||||| +++++|+|
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 3344443321 233 4566666 889999999999988899999999999999999999999999999999 99999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEec
Q 006800 536 IKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (630)
Q Consensus 536 i~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~ 576 (630)
+|++++||++++|+++..|+||+||+||.|. .+.++++++
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~-~~~~v~i~~ 453 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHG-SKTIATVWD 453 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTC-CCCCCEEEE
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCC-CCceEEEEE
Confidence 9999999999999999999999999999994 343444443
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=7.4e-40 Score=354.34 Aligned_cols=312 Identities=15% Similarity=0.158 Sum_probs=226.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCCE-EEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006800 244 GYEKPTSIQCQALPIILSGRDI-IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il~g~d~-l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
|+.+|+|+|. ++|.+++++++ ++++|||||||++|++|++.++.. .++++||++|||+||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhc---
Confidence 6788999986 79999999887 999999999999999999988754 36789999999999999988764
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHh-hcC
Q 006800 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG-QIR 401 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~-~l~ 401 (630)
++.+......... ....+..|.++|++.|...+... ..+.++++|||||||++ +..+...+..+.. ...
T Consensus 70 ---g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 70 ---GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp ---TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred ---Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 3333322221111 11234679999999998777544 45789999999999986 3333333333322 235
Q ss_pred CCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchh
Q 006800 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKT 481 (630)
Q Consensus 402 ~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~ 481 (630)
+++|+++||||++..+..+ +..++..+.+... ..... -.....++.. ..+++||||+++.
T Consensus 140 ~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~-~p~~~----------~~~~~~~l~~------~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE-IPERS----------WNTGFDWITD------YQGKTVWFVPSIK 199 (451)
T ss_dssp TSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC-CCSSC----------CSSSCHHHHH------CCSCEEEECSSHH
T ss_pred CCceEEEEccCCCccchhh---hcCCCceEecCcc-CCchh----------hHHHHHHHHh------CCCCEEEEcCCHH
Confidence 6899999999998753322 2233333332210 00000 0011222221 2569999999999
Q ss_pred hHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeC---------------
Q 006800 482 TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD--------------- 546 (630)
Q Consensus 482 ~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~--------------- 546 (630)
.++.++..|...++.+..+||.+. ..+++.|++|+.+|||||+++++|+|+|+ ++||+||
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred -----CCCCHHHHHHHhhhcccCCCCCeEEEEEecccc---HHHHHHHHHHHHHcCCCCCHHH
Q 006800 547 -----IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE---ARFAGELVNSLIAAGQNVSMEL 601 (630)
Q Consensus 547 -----~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d---~~~~~~l~~~l~~~~~~vp~~L 601 (630)
.|.++..|+||+||+||.|...|.+++|+...+ .....-+...+...+..+|.++
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 999999999999999999954788888875432 2222222334445667777655
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2e-39 Score=349.47 Aligned_cols=289 Identities=18% Similarity=0.249 Sum_probs=205.5
Q ss_pred HHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCC
Q 006800 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (630)
Q Consensus 258 ~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~ 337 (630)
++++|+++++++|||||||++|++|++.++.. +++++||++||++||.|+++.+..+ + +....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~~~- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQAF- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS----C--EEEESSCC-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcC----C--eEEecccc-
Confidence 35789999999999999999999999988754 3678999999999999999877643 2 22211110
Q ss_pred hHHHHHHHHcCCcEEEeChHHHHHHHHcc--------ccccCceeEEEecchhhhhcCCcHHHHHHHHhhc-CCCCcEEE
Q 006800 338 KLDQFKELKAGCEIVIATPGRLIDMLKMK--------ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLL 408 (630)
Q Consensus 338 ~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~--------~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l-~~~~q~l~ 408 (630)
-.++||+++.+++... ...+.++++|||||||++ +.++...+..+...+ ++.+|+++
T Consensus 70 -------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 70 -------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp -------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred -------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 0367776654333222 234789999999999997 333333333332222 46799999
Q ss_pred EeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCc--cccHHHHHHhccCCCCCCCEEEEccchhhHHHH
Q 006800 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD--AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEI 486 (630)
Q Consensus 409 ~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~--~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l 486 (630)
||||+++.+..++.. ..++. .....++.. ...+..+.. ..+++||||+++..++.+
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~~l~~------~~~~~lVF~~s~~~a~~l 193 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEIE--------------DVQTDIPSEPWNTGHDWILA------DKRPTAWFLPSIRAANVM 193 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCEE--------------EEECCCCSSCCSSSCHHHHH------CCSCEEEECSCHHHHHHH
T ss_pred EeCCCCchhhhhhhc--CCCee--------------EeeeccChHHHHHHHHHHHh------cCCCEEEEeCCHHHHHHH
Confidence 999998764432221 11111 111111111 112222222 257999999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEE-------------------eCC
Q 006800 487 ESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN-------------------FDI 547 (630)
Q Consensus 487 ~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~-------------------~~~ 547 (630)
+..|...++.+..+|| .+|..+++.|++|+.+|||||+++++|+|+| +++||+ |+.
T Consensus 194 ~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~ 268 (440)
T 1yks_A 194 AASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL 268 (440)
T ss_dssp HHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc
Confidence 9999999999999999 4688999999999999999999999999999 999996 899
Q ss_pred CCCHHHHHHHhhhcccCCCCCeEEEEEe---ccccHHHHHHHHHHHHHcCCCCCHHH
Q 006800 548 ARDMDMHVHRIGRTGRAGDKDGTAYTLV---TQKEARFAGELVNSLIAAGQNVSMEL 601 (630)
Q Consensus 548 p~~~~~y~QriGR~gR~g~~~g~~~~l~---~~~d~~~~~~l~~~l~~~~~~vp~~L 601 (630)
|.++..|+||+||+||.|...|.|++|+ ++.+...+..+...+..++.++|..+
T Consensus 269 p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~ 325 (440)
T 1yks_A 269 RISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGM 325 (440)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGGC
T ss_pred ccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccccc
Confidence 9999999999999999854689999996 67888888888888877777776543
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.1e-38 Score=346.13 Aligned_cols=295 Identities=21% Similarity=0.235 Sum_probs=222.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006800 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
..|+|+|.++++.++.+++++++++||+|||++|++++... +.++||||||++|+.||++++.+|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 47999999999999999999999999999999998887654 456999999999999999998884
Q ss_pred Cce-EEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCC
Q 006800 326 GIR-VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (630)
Q Consensus 326 ~~~-~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~ 404 (630)
++. +..++|+... .++|+|+||+.+...+.. ...++++|||||||++.+.+|.. ++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~ 219 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAP 219 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCS
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCC
Confidence 778 7777776543 479999999998876542 12468999999999998877653 44444 467
Q ss_pred cEEEEeecccHH-------------------HHHHHHHHcCCCeE--EEEccccc------------------------c
Q 006800 405 QTLLFSATMPRK-------------------VEKLAREILSDPVR--VTVGEVGM------------------------A 439 (630)
Q Consensus 405 q~l~~SAT~~~~-------------------~~~l~~~~~~~~~~--i~~~~~~~------------------------~ 439 (630)
+++++|||+.+. ...+...++..+.. +.+..... .
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 899999999732 12221122222111 11100000 0
Q ss_pred cccceEEEE--------------------EcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEE
Q 006800 440 NEDITQVVH--------------------VIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (630)
Q Consensus 440 ~~~i~q~~~--------------------~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ 499 (630)
...+.+.+. .......|...|...+.. ...+++||||++...++.++..|. +..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 000000000 000122355666666655 346799999999999999999883 567
Q ss_pred EeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCC--CeEEEEEecc
Q 006800 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK--DGTAYTLVTQ 577 (630)
Q Consensus 500 ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~--~g~~~~l~~~ 577 (630)
+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+|++|+|+..|+||+||+||.|+. ...+|.|++.
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999943 4566667775
Q ss_pred c
Q 006800 578 K 578 (630)
Q Consensus 578 ~ 578 (630)
.
T Consensus 454 ~ 454 (472)
T 2fwr_A 454 G 454 (472)
T ss_dssp S
T ss_pred C
Confidence 4
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.4e-38 Score=357.88 Aligned_cols=338 Identities=18% Similarity=0.259 Sum_probs=246.9
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCC
Q 006800 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (630)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~-g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (630)
+.++.+|.++++++.+.+.+...+ ..|++.|+++++.++. +++++++||||||||+ ++|++...... ..+.++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCc
Confidence 456789999999999999999888 7899999999988775 5689999999999998 46665332211 122367
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEec
Q 006800 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (630)
Q Consensus 300 ~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvD 379 (630)
+++|++|+|+||.|++..+.... +..+...+|+...... ....+.+|+++||+++.+.+... ..+.++++||||
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~---~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEM---DVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHT---TCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred eEEecCchHHHHHHHHHHHHHHh---CCchhheecceecccc--ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 79999999999999987665543 3322212221100000 01135889999999999877654 358899999999
Q ss_pred chhh-hhcCCcH-HHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccH
Q 006800 380 EADR-MFDLGFE-PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457 (630)
Q Consensus 380 Eah~-~~~~~~~-~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~ 457 (630)
|+|. +++..+. ..+..+. ...+..|+|+||||++.. .+. .++.++..+.+... ...+.+.+..... ....
T Consensus 216 Eah~R~ld~d~~~~~l~~l~-~~~~~~~iIl~SAT~~~~--~l~-~~~~~~~vi~v~gr---~~pv~~~~~~~~~-~~~~ 287 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVV-KRRPDLKIIIMSATLDAE--KFQ-RYFNDAPLLAVPGR---TYPVELYYTPEFQ-RDYL 287 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHH-HHCTTCEEEEEESCSCCH--HHH-HHTTSCCEEECCCC---CCCEEEECCSSCC-SCHH
T ss_pred CccccccchHHHHHHHHHHH-HhCCCceEEEEeccccHH--HHH-HHhcCCCcccccCc---ccceEEEEecCCc-hhHH
Confidence 9995 5553322 2333333 345689999999999643 344 45554434443322 2234443332222 2222
Q ss_pred HHHHHhccC---CCCCCCEEEEccchhhHHHHHHHHHh-----------CCCcEEEEeCCCCHHHHHHHHHHhh-----c
Q 006800 458 PWLLEKLPG---MIDDGDVLVFASKKTTVDEIESQLAQ-----------KGFKAAALHGDKDQASRMEILQKFK-----S 518 (630)
Q Consensus 458 ~~l~~~l~~---~~~~~~iLIF~~s~~~~~~l~~~L~~-----------~~~~~~~ihg~~~~~~r~~~~~~F~-----~ 518 (630)
...+..+.. ....+++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|. +
T Consensus 288 ~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~ 367 (773)
T 2xau_A 288 DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR 367 (773)
T ss_dssp HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC
Confidence 222222211 12468999999999999999999975 5788999999999999999999999 9
Q ss_pred CCceEEEEcCCcccCCCCCCccEEEEeCC------------------CCCHHHHHHHhhhcccCCCCCeEEEEEeccccH
Q 006800 519 GVYHVLIATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (630)
Q Consensus 519 g~~~VLvaT~~~~~Gldi~~v~~VI~~~~------------------p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~ 580 (630)
|..+|||||+++++|||||++++||++++ |.+...|+||+||+||.+ .|.||+|+++.+.
T Consensus 368 g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~--~G~~~~l~~~~~~ 445 (773)
T 2xau_A 368 PGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR--PGKCFRLYTEEAF 445 (773)
T ss_dssp CCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSS--SEEEEESSCHHHH
T ss_pred CceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCC--CCEEEEEecHHHh
Confidence 99999999999999999999999999887 889999999999999994 7999999987664
No 48
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-36 Score=304.60 Aligned_cols=235 Identities=43% Similarity=0.720 Sum_probs=202.0
Q ss_pred CceeccCCCCC--CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhc
Q 006800 212 AIRVSGFDVPR--PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 212 ~~~~~~~~~p~--p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
.+.+.+...|. ++.+|.++++++.+++.|...||..|+|+|.++++.+++|+++++++|||+|||++|++|++.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~ 87 (253)
T 1wrb_A 8 PVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVC 87 (253)
T ss_dssp CCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 45667777777 8999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCcc----cccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc
Q 006800 290 QPEL----QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365 (630)
Q Consensus 290 ~~~~----~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~ 365 (630)
.... ....++++|||+||++|+.|+++.+.+++...++++..++||.....+...+..+++|+|+||++|..++..
T Consensus 88 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~ 167 (253)
T 1wrb_A 88 QDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK 167 (253)
T ss_dssp TCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT
T ss_pred hccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc
Confidence 4311 123467899999999999999999999988888999999999998888888888999999999999999988
Q ss_pred cccccCceeEEEecchhhhhcCCcHHHHHHHHhhc--CC--CCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccc
Q 006800 366 KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANE 441 (630)
Q Consensus 366 ~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l--~~--~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~ 441 (630)
....+.++++||+||||+|.+++|...+..++..+ +. .+|+++||||+++.+..+++.++.+|..+.++..+....
T Consensus 168 ~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~ 247 (253)
T 1wrb_A 168 NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSD 247 (253)
T ss_dssp TSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-------
T ss_pred CCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcC
Confidence 87788999999999999999999999999999854 33 689999999999999999999999999999887766666
Q ss_pred cceEE
Q 006800 442 DITQV 446 (630)
Q Consensus 442 ~i~q~ 446 (630)
.+.|.
T Consensus 248 ~i~q~ 252 (253)
T 1wrb_A 248 SIKQE 252 (253)
T ss_dssp -----
T ss_pred Cceec
Confidence 66654
No 49
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3.1e-39 Score=362.14 Aligned_cols=314 Identities=18% Similarity=0.237 Sum_probs=218.4
Q ss_pred HHHcCCC-----CCcHHHH-----HHHHHHH------cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEE
Q 006800 240 ISKQGYE-----KPTSIQC-----QALPIIL------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (630)
Q Consensus 240 l~~~~~~-----~~~~~Q~-----~~i~~il------~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLi 303 (630)
|...||. .|+|+|+ ++||.++ +++++|+++|||||||++|++|++.++.. +++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEE
Confidence 3445655 8999999 9999988 89999999999999999999999988754 3678999
Q ss_pred EcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 006800 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (630)
Q Consensus 304 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (630)
|+||++||.|+++.+..+ ++. ...+.... .-..+.-+-+.+.+.+...+... ..++++++|||||||+
T Consensus 276 laPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHF 343 (673)
T ss_dssp EESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTC
T ss_pred EccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcc
Confidence 999999999999887654 332 11110000 00001223333444443333322 4578999999999999
Q ss_pred hhcCCcHHHHHHHHhhc-CCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHH
Q 006800 384 MFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (630)
Q Consensus 384 ~~~~~~~~~v~~i~~~l-~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~ 462 (630)
+ +..+...+..+...+ ++.+|+++||||+++.+..+... ..|+. .....++. .....++.
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~--------------~v~~~~~~--~~~~~~l~ 404 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVH--------------DVSSEIPD--RAWSSGFE 404 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEE--------------EEECCCCS--SCCSSCCH
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceE--------------EEeeecCH--HHHHHHHH
Confidence 7 222222333333333 36799999999998663322211 11111 11111111 11111222
Q ss_pred hccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEE
Q 006800 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (630)
Q Consensus 463 ~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~V 542 (630)
.+.. ..+++||||+++..++.++..|...++.+..+||. +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 405 ~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~V 477 (673)
T 2wv9_A 405 WITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRV 477 (673)
T ss_dssp HHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEE
Confidence 2222 36799999999999999999999999999999993 789999999999999999999999999999 9999
Q ss_pred EE--------------------eCCCCCHHHHHHHhhhcccCCCCCeEEEEEe---ccccHHHHHHHHHHHHHcCCCCC
Q 006800 543 VN--------------------FDIARDMDMHVHRIGRTGRAGDKDGTAYTLV---TQKEARFAGELVNSLIAAGQNVS 598 (630)
Q Consensus 543 I~--------------------~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~---~~~d~~~~~~l~~~l~~~~~~vp 598 (630)
|+ |++|.++..|+||+||+||.|.+.|.|++|+ ++.+...+..+...+......++
T Consensus 478 I~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~ 556 (673)
T 2wv9_A 478 IDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLP 556 (673)
T ss_dssp EECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBT
T ss_pred EECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCC
Confidence 98 6689999999999999999944689999996 57777666666665544444443
No 50
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-36 Score=295.80 Aligned_cols=216 Identities=42% Similarity=0.706 Sum_probs=189.8
Q ss_pred cCCCCCCCCCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCc-cc
Q 006800 217 GFDVPRPVKTFED-CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE-LQ 294 (630)
Q Consensus 217 ~~~~p~p~~~~~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~-~~ 294 (630)
+...|+|+.+|.+ +++++.+++.|.+.||.+|+|+|.++++.+++|+++++++|||+|||++|++|++.++..... ..
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 4557999999999 799999999999999999999999999999999999999999999999999999998865421 12
Q ss_pred ccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCcee
Q 006800 295 KEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVT 374 (630)
Q Consensus 295 ~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~ 374 (630)
...++++||++||++||.|+++.+.++. ..++++..++||.....+...+..+++|+|+||++|..++......+++++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 2357889999999999999999999986 348899999999998888888889999999999999999988888889999
Q ss_pred EEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEE
Q 006800 375 YLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (630)
Q Consensus 375 ~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~ 433 (630)
+|||||||++.+++|...+..++..+++.+|+++||||+++.+..++..++.+|+.+.+
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 99999999999999999999999999999999999999999999999999999988753
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.9e-38 Score=347.90 Aligned_cols=279 Identities=23% Similarity=0.261 Sum_probs=213.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006800 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.+.++|.++++.+..+++++++||||||||.+|.+|++.. +.++||++|||+||.|+++.+.+.. +
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 3455666666777788999999999999999998887752 5579999999999999988665553 6
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCc-
Q 006800 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ- 405 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q- 405 (630)
..+...+|+.. +..+++|+|+||++| +....+.++++++|||||||. ++++|...+..++..++..+|
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCc
Confidence 67777777754 345699999999998 455666788899999999965 667788889999999887777
Q ss_pred -EEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHH
Q 006800 406 -TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVD 484 (630)
Q Consensus 406 -~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~ 484 (630)
+++||||+++.+. ...|....+.. ..... ..... .+.. + .....+++||||+++..++
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~---~~~~~---i~~~~---~~~~-----l-~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVAL---SNTGE---IPFYG---KAIP-----I-EAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEEC---BSCSS---EEETT---EEEC-----G-GGSSSSEEEEECSCHHHHH
T ss_pred eEEEECCCCCcccc------cCCcceEEEee---cccch---hHHHH---hhhh-----h-hhccCCcEEEEeCCHHHHH
Confidence 6777999987311 11121111100 00000 00110 0000 1 1124679999999999999
Q ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEE----------EeC--------
Q 006800 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----------NFD-------- 546 (630)
Q Consensus 485 ~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI----------~~~-------- 546 (630)
.++..|...++.+..+||++++.+ |.++..+|||||+++++|||++ +++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999875 5566679999999999999997 99988 677
Q ss_pred ---CCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHH
Q 006800 547 ---IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582 (630)
Q Consensus 547 ---~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~ 582 (630)
.|.+...|+||+||+|| | +.|. ++|+++.+...
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g-~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-G-RRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-S-SCEE-EEESCCCCBCS
T ss_pred cccCcCCHHHHHHHhccCCC-C-CCCE-EEEEecchhhc
Confidence 89999999999999999 7 5799 99999877544
No 52
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=291.82 Aligned_cols=209 Identities=43% Similarity=0.713 Sum_probs=193.6
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCe
Q 006800 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (630)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 300 (630)
+.++.+|.++++++.+++.|.+.||..|+|+|.++++.+++|+++++++|||+|||++|++|++.++... ..+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-----~~~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-----PQRLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CCSSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----CCCce
Confidence 3567899999999999999999999999999999999999999999999999999999999999988654 23678
Q ss_pred EEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEEEec
Q 006800 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLD 379 (630)
Q Consensus 301 vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~i~~lVvD 379 (630)
+|||+||++|+.|+++.+.+++...++++..++||.....+...+..+++|+|+||++|.+.+.. ....+..+++||||
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 99999999999999999999998889999999999998888888888999999999999998876 45568899999999
Q ss_pred chhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEc
Q 006800 380 EADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (630)
Q Consensus 380 Eah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~ 434 (630)
|||++.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|+.+.++
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999888653
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.2e-37 Score=333.35 Aligned_cols=272 Identities=19% Similarity=0.243 Sum_probs=199.0
Q ss_pred HHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECC
Q 006800 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG 335 (630)
Q Consensus 256 i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg 335 (630)
..++.+++++++++|||||||++|++|++.++.. .++++||++|||+||.|+++.+. ++.+....+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhc------CceEeEEecc
Confidence 4456678999999999999999999999998764 26789999999999999988876 3333222211
Q ss_pred CChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh-----hhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006800 336 MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-----MFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 336 ~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~-----~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
.... -..+.-+.++|.+.+...+... ..++++++|||||||+ ++.+++...+. ..+..|+++||
T Consensus 82 ~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~S 150 (459)
T 2z83_A 82 VQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMT 150 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEEC
T ss_pred cccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEE
Confidence 1110 1234567788888887665543 4578999999999998 44444332221 23689999999
Q ss_pred ecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCC--ccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHH
Q 006800 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS--DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIES 488 (630)
Q Consensus 411 AT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~--~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~ 488 (630)
||++..+..+... ..|+..... .++. .......+. . ..+++||||+++..++.++.
T Consensus 151 AT~~~~~~~~~~~--~~pi~~~~~--------------~~~~~~~~~~~~~l~----~--~~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 151 ATPPGTTDPFPDS--NAPIHDLQD--------------EIPDRAWSSGYEWIT----E--YAGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp SSCTTCCCSSCCC--SSCEEEEEC--------------CCCSSCCSSCCHHHH----H--CCSCEEEECSCHHHHHHHHH
T ss_pred cCCCcchhhhccC--CCCeEEecc--------------cCCcchhHHHHHHHH----h--cCCCEEEEeCChHHHHHHHH
Confidence 9998654322211 223322110 1111 011122222 2 25799999999999999999
Q ss_pred HHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEE--------------------eCCC
Q 006800 489 QLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------------------FDIA 548 (630)
Q Consensus 489 ~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~--------------------~~~p 548 (630)
.|...++.+..+||. +|..+++.|++|+.+|||||+++++|+|||+ ++||+ |++|
T Consensus 209 ~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p 283 (459)
T 2z83_A 209 CLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP 283 (459)
T ss_dssp HHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE
T ss_pred HHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC
Confidence 999999999999995 6788999999999999999999999999999 99999 7799
Q ss_pred CCHHHHHHHhhhcccCCCCCeEEEEEeccc
Q 006800 549 RDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (630)
Q Consensus 549 ~~~~~y~QriGR~gR~g~~~g~~~~l~~~~ 578 (630)
.++..|+||+||+||.|...|.+++|++..
T Consensus 284 ~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 284 ITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999999999995479999999875
No 54
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.5e-35 Score=290.51 Aligned_cols=213 Identities=33% Similarity=0.537 Sum_probs=181.1
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCccccc
Q 006800 217 GFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296 (630)
Q Consensus 217 ~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 296 (630)
..+.|.++.+|+++++++.+++.|.+.||..|+|+|.++++.+++|+++++++|||+|||++|++|++.++... .
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~ 96 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----F 96 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----S
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 34567889999999999999999999999999999999999999999999999999999999999999886432 2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcC-CcEEEeChHHHHHHHHccccccCceeE
Q 006800 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTY 375 (630)
Q Consensus 297 ~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~i~~ 375 (630)
.++++|||+||++|+.|+++.+.+++...++.+..++||.....+...+..+ ++|+|+||++|.+++......+..+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM 176 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcE
Confidence 4678999999999999999999999888889999999998887777777666 899999999999999887778889999
Q ss_pred EEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEc
Q 006800 376 LVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (630)
Q Consensus 376 lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~ 434 (630)
|||||||++.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.++
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999887653
No 55
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=293.01 Aligned_cols=230 Identities=33% Similarity=0.574 Sum_probs=199.3
Q ss_pred HHHHHHHHcCceeccCCCCCCCCCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHH
Q 006800 203 DVMEYKKSLAIRVSGFDVPRPVKTFEDC----GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~p~p~~~~~~~----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~ 278 (630)
++..+|++..+.+.+...|.|+.+|.++ ++++.+++.+.+.||..|+|+|.++++.+++|+++++++|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677889999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH-HHHcCCcEEEeChH
Q 006800 279 FVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK-ELKAGCEIVIATPG 357 (630)
Q Consensus 279 ~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~-~l~~~~dIiv~Tp~ 357 (630)
|++|++.++... ...++++|||+||++|+.|+++.+.+++...++++..++|+........ ....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999988542 2357789999999999999999999999888888887776543322211 12346899999999
Q ss_pred HHHHHHHcc--ccccCceeEEEecchhhhhc---CCcHHHHHHHHhhcC-CCCcEEEEeecccHHHHHHHHHHcCCCeEE
Q 006800 358 RLIDMLKMK--ALTMSRVTYLVLDEADRMFD---LGFEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (630)
Q Consensus 358 ~L~~~l~~~--~~~l~~i~~lVvDEah~~~~---~~~~~~v~~i~~~l~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i 431 (630)
+|..++... ...+.++++|||||||++.+ .+|...+..++..+. +..|+++||||+++.+..+++.++.+|+.+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 999999876 45688999999999999998 578888988887764 578999999999999999999999999999
Q ss_pred EEccc
Q 006800 432 TVGEV 436 (630)
Q Consensus 432 ~~~~~ 436 (630)
.++..
T Consensus 239 ~~~~~ 243 (245)
T 3dkp_A 239 SIGAR 243 (245)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 88653
No 56
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.6e-35 Score=318.35 Aligned_cols=271 Identities=21% Similarity=0.226 Sum_probs=195.5
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|+++++++|||||||++|++|++.++.. +++++||++||++||.|+++.+. ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 47899999999999999999999977654 36789999999999999887664 4555544443221
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc-CCCCcEEEEeecccHHHHH
Q 006800 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEK 419 (630)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l-~~~~q~l~~SAT~~~~~~~ 419 (630)
.-..+.-+.+.|.+.+...+.. ...+.++++|||||+|++ ...+......+.... ++.+|+++||||+++.+..
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1112456777888888766555 445889999999999996 333344444443332 5689999999999874322
Q ss_pred HHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEE
Q 006800 420 LAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (630)
Q Consensus 420 l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ 499 (630)
+... ..|+ ......++ ..+...+...+.. ..+++||||+++..++.++..|...++.+..
T Consensus 141 ~~~~--~~~i--------------~~~~~~~~--~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 141 FPPS--NSPI--------------IDEETRIP--DKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp SCCC--SSCC--------------EEEECCCC--SSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCC--CCce--------------eeccccCC--HHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 1110 1111 11100111 1122222233333 2578999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccE-----------------EEEeCCCCCHHHHHHHhhhcc
Q 006800 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS-----------------VVNFDIARDMDMHVHRIGRTG 562 (630)
Q Consensus 500 ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~-----------------VI~~~~p~~~~~y~QriGR~g 562 (630)
+||. +|.++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+...|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 655 678899999999999999999
Q ss_pred cCCCCCeEEEEEec
Q 006800 563 RAGDKDGTAYTLVT 576 (630)
Q Consensus 563 R~g~~~g~~~~l~~ 576 (630)
|.|...|.++++..
T Consensus 276 R~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 276 RNPEKLGDIYAYSG 289 (431)
T ss_dssp CCTTCCCCEEEECS
T ss_pred CCCCCCCeEEEEcC
Confidence 99855566666653
No 57
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=285.19 Aligned_cols=227 Identities=31% Similarity=0.504 Sum_probs=196.6
Q ss_pred HHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHH
Q 006800 201 EQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFV 280 (630)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~ 280 (630)
.++...+++.+.. ..++++.+|.++++++.+++.|.+.||..|+|+|.++++.+++|+++++++|||+|||++|+
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 3445555655432 22567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHH
Q 006800 281 LPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI 360 (630)
Q Consensus 281 l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~ 360 (630)
+|++.+++..+. ....++++||++||++|+.|+++.+.++....++.+..++||.........+ .+++|+|+||++|.
T Consensus 81 ~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 81 VPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158 (236)
T ss_dssp HHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHH
Confidence 999998875421 2235788999999999999999999999888789999999998877665555 57999999999999
Q ss_pred HHHHcc-ccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEc
Q 006800 361 DMLKMK-ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (630)
Q Consensus 361 ~~l~~~-~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~ 434 (630)
..+... ...+.++++||+||||++.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+.
T Consensus 159 ~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 159 QHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 988764 45678999999999999999999999999999999999999999999999999999999999888764
No 58
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=6.8e-36 Score=335.20 Aligned_cols=304 Identities=16% Similarity=0.155 Sum_probs=190.4
Q ss_pred CCCcHHHHHHHHHHHc----C-CCEEEEeCCCChHHHHHHHHHHHHHhcCC--cccccCCCeEEEEcccHHHHHHHH-HH
Q 006800 246 EKPTSIQCQALPIILS----G-RDIIGIAKTGSGKTAAFVLPMIVHIMDQP--ELQKEEGPIGVICAPTRELAHQIY-LE 317 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~----g-~d~l~~a~TGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~vLil~Ptr~La~Q~~-~~ 317 (630)
..|+|+|.++++.++. + ++++++++||+|||++++. ++..++... ......++++|||+||++|+.||. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3699999999999875 4 6699999999999998654 444443321 001124788999999999999998 66
Q ss_pred HHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc----cccccCceeEEEecchhhhhcCCcHHHH
Q 006800 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM----KALTMSRVTYLVLDEADRMFDLGFEPQI 393 (630)
Q Consensus 318 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~----~~~~l~~i~~lVvDEah~~~~~~~~~~v 393 (630)
+..+ +..+..+.++. ...+++|+|+||++|...+.. ..+....+++|||||||++...+ ...+
T Consensus 256 ~~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 256 FTPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp CTTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred HHhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 6665 44444443322 234689999999999887642 23345679999999999987543 3456
Q ss_pred HHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEccccc---ccccceEEEEEc--------------------
Q 006800 394 RSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM---ANEDITQVVHVI-------------------- 450 (630)
Q Consensus 394 ~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~---~~~~i~q~~~~~-------------------- 450 (630)
..++..++ ..++++||||+......-...+++.++......... ............
T Consensus 323 ~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
T 3h1t_A 323 REILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE 401 (590)
T ss_dssp HHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccc
Confidence 66777765 478999999987543333334444433221100000 000000000000
Q ss_pred ------C-Cc-------cccHHH----HHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCC--------cEEEEeCCC
Q 006800 451 ------P-SD-------AEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGF--------KAAALHGDK 504 (630)
Q Consensus 451 ------~-~~-------~~k~~~----l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~--------~~~~ihg~~ 504 (630)
. .. ..+... +...+......+++||||+++..++.++..|...+. .+..+||.+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 402 IPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp -------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred cccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 0 00 011122 222233323457899999999999999999987543 278899987
Q ss_pred CHHHHHHHHHHhhcCCce---EEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCC
Q 006800 505 DQASRMEILQKFKSGVYH---VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (630)
Q Consensus 505 ~~~~r~~~~~~F~~g~~~---VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g 565 (630)
++ +|..+++.|++|+.+ |||||+++++|+|+|++++||++++|+++..|+||+||+||.+
T Consensus 482 ~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLR 544 (590)
T ss_dssp HH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCB
T ss_pred hH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccC
Confidence 64 799999999998766 8889999999999999999999999999999999999999987
No 59
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=296.69 Aligned_cols=204 Identities=32% Similarity=0.469 Sum_probs=183.0
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCe
Q 006800 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (630)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 300 (630)
++.+|.+++|++.+++.|...||..|+|+|.++||.+++| +|+++++|||||||++|++|++.++... ..+|+
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-----~~~~~ 164 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-----CCCce
Confidence 5789999999999999999999999999999999999998 9999999999999999999999987542 34788
Q ss_pred EEEEcccHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEEEe
Q 006800 301 GVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVL 378 (630)
Q Consensus 301 vLil~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~i~~lVv 378 (630)
+|||+|||+||.|++..+..+.... ++.+.+++||....... ..+++|+||||++|.+++.+ ....++++.+|||
T Consensus 165 ~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 9999999999999999999998754 68888888877643321 45689999999999999965 5567899999999
Q ss_pred cchhhhhc-CCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEc
Q 006800 379 DEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (630)
Q Consensus 379 DEah~~~~-~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~ 434 (630)
||||+|++ .+|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+.
T Consensus 242 DEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp TTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred eCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 99999998 789999999999999999999999999999999999999999988764
No 60
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.4e-34 Score=284.95 Aligned_cols=211 Identities=27% Similarity=0.446 Sum_probs=184.8
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCccccc
Q 006800 217 GFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296 (630)
Q Consensus 217 ~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 296 (630)
+...|.+..+|+++++++.+++.|.+.||..|+|+|.++++.+++|+++++++|||+|||++|++|++.++... .
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~ 90 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----N 90 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----S
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 45568888999999999999999999999999999999999999999999999999999999999999887542 3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeE
Q 006800 297 EGPIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375 (630)
Q Consensus 297 ~~~~vLil~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~ 375 (630)
.++++|||+||++|+.|+++.+.++.... ++++..++||.....+...+ .+++|+|+||++|..++......+.++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 46789999999999999999999998665 78999999988876665544 47999999999999999887777889999
Q ss_pred EEecchhhhhcCC-cHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEE
Q 006800 376 LVLDEADRMFDLG-FEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (630)
Q Consensus 376 lVvDEah~~~~~~-~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~ 433 (630)
||+||||++.+++ |...+..++..++..+|+++||||+++.+..++..++.+|..+.+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999997 999999999999989999999999999999999999999987654
No 61
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=6.7e-35 Score=284.91 Aligned_cols=208 Identities=37% Similarity=0.574 Sum_probs=187.2
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEE
Q 006800 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (630)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (630)
|..+|.++++++.+++.+.+.||..|+|+|.++++.+++|+++++++|||+|||++|++|++.++... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 45789999999999999999999999999999999999999999999999999999999999887532 3467899
Q ss_pred EEcccHHHHHHHHHHHHHHhhhc----CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEe
Q 006800 303 ICAPTRELAHQIYLETKKFAKSH----GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (630)
Q Consensus 303 il~Ptr~La~Q~~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVv 378 (630)
||+||++|+.|+++.+.++.... ++.+..++||.........+..+++|+|+||++|.+++......+..++++||
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999998766 78888899988766655555567899999999999999887777889999999
Q ss_pred cchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcc
Q 006800 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (630)
Q Consensus 379 DEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 435 (630)
||||++.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+..
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999999999999999999999999999999999998876543
No 62
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.8e-34 Score=276.66 Aligned_cols=202 Identities=35% Similarity=0.596 Sum_probs=187.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEE
Q 006800 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (630)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil 304 (630)
.+|+++++++.+++.|.+.||..|+|+|.++++.+++|+++++++|||+|||++|++|++.++... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999886432 346789999
Q ss_pred cccHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 006800 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (630)
Q Consensus 305 ~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (630)
+||++|+.|+++.+.++.... ++.+..++|+.........+..+++|+|+||++|...+......+.+++++|+||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999998776 7889999999988888777888899999999999999988777889999999999999
Q ss_pred hhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEE
Q 006800 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (630)
Q Consensus 384 ~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i 431 (630)
+.+.+|...+..++..+++.+|+++||||+++.+..+++.++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999899999999999999999999999999765
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=3e-34 Score=281.23 Aligned_cols=212 Identities=33% Similarity=0.561 Sum_probs=184.4
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccC
Q 006800 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297 (630)
Q Consensus 218 ~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 297 (630)
...|+++.+|.++++++.+++.+.+.||..|+|+|.++++.+++|+++++++|||+|||++|++|++.++... ..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VK 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CC
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CC
Confidence 3457889999999999999999999999999999999999999999999999999999999999999887432 34
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEE
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lV 377 (630)
++++||++||++|+.|+++.+.+++...++++..++|+.....+...+.. ++|+|+||++|...+......+.++++||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 67899999999999999999999988889999999998877666555443 99999999999999988877889999999
Q ss_pred ecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcc
Q 006800 378 LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (630)
Q Consensus 378 vDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 435 (630)
+||||++.+++|...+..++..+++..|+++||||+++.+..+++.++.+|..+.+..
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999998876543
No 64
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=8e-34 Score=274.57 Aligned_cols=204 Identities=41% Similarity=0.682 Sum_probs=187.6
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEc
Q 006800 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (630)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~ 305 (630)
+|.++++++.+++.+.+.|+..|+|+|.++++.+++|+++++++|||+|||++|++|++.++.... ....++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999876432 123478899999
Q ss_pred ccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh
Q 006800 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 306 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
||++|+.|+++.+.+++. .+++..++||.........+..+++|+|+||++|...+......+..+++||+||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCT--TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh--cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 999999999999999976 478888999998888888888899999999999999998877788999999999999999
Q ss_pred cCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEE
Q 006800 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (630)
Q Consensus 386 ~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~ 433 (630)
+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999988764
No 65
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.2e-33 Score=310.83 Aligned_cols=312 Identities=16% Similarity=0.223 Sum_probs=217.3
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006800 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il----~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
..|+|+|.++++++. .++++|++++||+|||++++.. +..+... +...++|||||+ .|+.||.+++.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~-i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAV-FSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHH-HHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHH-HHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 479999999999874 6789999999999999986544 4444322 224569999995 6889999999999
Q ss_pred hhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcC
Q 006800 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (630)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~ 401 (630)
+. ++++..++|+... ....+++|+|+||+.+..... +....+++|||||||++.+.. ......+..++
T Consensus 109 ~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~ 176 (500)
T 1z63_A 109 AP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK 176 (500)
T ss_dssp CT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC
T ss_pred CC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc
Confidence 76 5666666665432 112358999999999875443 334578999999999987654 23444555553
Q ss_pred CCCcEEEEeecccHH-HHH---HH---------------------------------HHHcCCCeEEEEcccc----ccc
Q 006800 402 PDRQTLLFSATMPRK-VEK---LA---------------------------------REILSDPVRVTVGEVG----MAN 440 (630)
Q Consensus 402 ~~~q~l~~SAT~~~~-~~~---l~---------------------------------~~~~~~~~~i~~~~~~----~~~ 440 (630)
..+.+++|||+..+ ..+ ++ ..++ .|..+...... ...
T Consensus 177 -~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~l 254 (500)
T 1z63_A 177 -SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDL 254 (500)
T ss_dssp -EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTS
T ss_pred -cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcC
Confidence 46789999998432 111 11 1111 12211110000 001
Q ss_pred ccceEEEEEcC--------------------------------------------------------CccccHHHHHHhc
Q 006800 441 EDITQVVHVIP--------------------------------------------------------SDAEKLPWLLEKL 464 (630)
Q Consensus 441 ~~i~q~~~~~~--------------------------------------------------------~~~~k~~~l~~~l 464 (630)
.........+. ....|...+.+.+
T Consensus 255 p~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 255 PDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp CSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 11111111111 1123444555555
Q ss_pred cCCC-CCCCEEEEccchhhHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHhhcC-Cce-EEEEcCCcccCCCCCCcc
Q 006800 465 PGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSG-VYH-VLIATDVAARGLDIKSIK 540 (630)
Q Consensus 465 ~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~r~~~~~~F~~g-~~~-VLvaT~~~~~Gldi~~v~ 540 (630)
.... .+.++||||++...++.+...|... ++.+..+||++++.+|.++++.|++| ..+ +|++|+++++|+|+++++
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 4432 4569999999999999999999885 99999999999999999999999998 555 789999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhhhcccCCCC-CeEEEEEeccc
Q 006800 541 SVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (630)
Q Consensus 541 ~VI~~~~p~~~~~y~QriGR~gR~g~~-~g~~~~l~~~~ 578 (630)
+||+||+|||+..|.||+||++|.|++ ...+|.|++..
T Consensus 415 ~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 415 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp EEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999999999943 45566777765
No 66
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.7e-34 Score=336.52 Aligned_cols=332 Identities=19% Similarity=0.177 Sum_probs=224.4
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006800 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g--~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
..|+|+|.+++..++.. .++|++++||+|||++++..+...+.. +...++|||||+ .|+.||..++.+++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~------g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS------GAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT------SSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh------CCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 47999999999998864 588999999999999987766655432 223469999999 99999999997765
Q ss_pred hcCceEEEEECCCChHHHHH---HHHcCCcEEEeChHHHHHHHHc-cccccCceeEEEecchhhhhcCCcH--HHHHHHH
Q 006800 324 SHGIRVSAVYGGMSKLDQFK---ELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLDEADRMFDLGFE--PQIRSIV 397 (630)
Q Consensus 324 ~~~~~~~~~~gg~~~~~~~~---~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~i~~lVvDEah~~~~~~~~--~~v~~i~ 397 (630)
++.+..+.++. ...... ......+|+|+|++.|...... ..+....+++|||||||++.+.+.. .....+.
T Consensus 224 --~l~v~v~~~~~-~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 --NLRFALFDDER-YAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp --CCCCEECCHHH-HHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred --CCCEEEEccch-hhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 66666554432 111111 1112479999999988642211 1233457999999999998754421 1122222
Q ss_pred hhcCCCCcEEEEeecccHH----HHHHHH----------------------------HHcCC------------------
Q 006800 398 GQIRPDRQTLLFSATMPRK----VEKLAR----------------------------EILSD------------------ 427 (630)
Q Consensus 398 ~~l~~~~q~l~~SAT~~~~----~~~l~~----------------------------~~~~~------------------ 427 (630)
......++++++||||.++ +..++. .+...
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 2223456799999998431 111110 00000
Q ss_pred ----------------------------------CeEEEEccc---ccccccceEEEE----------------------
Q 006800 428 ----------------------------------PVRVTVGEV---GMANEDITQVVH---------------------- 448 (630)
Q Consensus 428 ----------------------------------~~~i~~~~~---~~~~~~i~q~~~---------------------- 448 (630)
.+.+..... +...........
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 000000000 000000000000
Q ss_pred ----------------------EcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHh-CCCcEEEEeCCCC
Q 006800 449 ----------------------VIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ-KGFKAAALHGDKD 505 (630)
Q Consensus 449 ----------------------~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~-~~~~~~~ihg~~~ 505 (630)
.......|...|...+.. ...+++||||+++..++.++..|.. .|+.+..+||+++
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 011233467777777765 3567999999999999999999995 5999999999999
Q ss_pred HHHHHHHHHHhhcCC--ceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHH
Q 006800 506 QASRMEILQKFKSGV--YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583 (630)
Q Consensus 506 ~~~r~~~~~~F~~g~--~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~ 583 (630)
+.+|..+++.|++|+ ++|||||+++++|+|+|++++||+|++|+++..|.||+||+||.|+ .|.++++.........
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq-~~~v~v~~~~~~~t~e 618 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQ-AHDIQIHVPYLEKTAQ 618 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSS-CSCCEEEEEEETTSHH
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCC-CceEEEEEecCCChHH
Confidence 999999999999998 9999999999999999999999999999999999999999999994 4544444333333333
Q ss_pred HHHHHHH
Q 006800 584 GELVNSL 590 (630)
Q Consensus 584 ~~l~~~l 590 (630)
..|.+.+
T Consensus 619 e~i~~~~ 625 (968)
T 3dmq_A 619 SVLVRWY 625 (968)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=281.99 Aligned_cols=204 Identities=36% Similarity=0.566 Sum_probs=182.8
Q ss_pred CCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEE
Q 006800 225 KTFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (630)
Q Consensus 225 ~~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (630)
.+|.+++ +++.+++.|...||..|+|+|.++++.++.|+++++++|||||||++|++|++..+...+. ....++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-MPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-cccCCceEE
Confidence 3455665 9999999999999999999999999999999999999999999999999999998876432 123478899
Q ss_pred EEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc-ccccCceeEEEecch
Q 006800 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEA 381 (630)
Q Consensus 303 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-~~~l~~i~~lVvDEa 381 (630)
||+||++||.|+++.+.+++...++.+..++||.........+..+++|+|+||++|...+... ...+.++.+||||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999999998899999999999999888888889999999999999988764 356889999999999
Q ss_pred hhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCe
Q 006800 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPV 429 (630)
Q Consensus 382 h~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~ 429 (630)
|+|.+++|...+..++..+++.+|+++||||+++.+..+++.++.++.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999987653
No 68
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.2e-34 Score=318.79 Aligned_cols=285 Identities=20% Similarity=0.243 Sum_probs=210.0
Q ss_pred HHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEEC
Q 006800 255 ALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334 (630)
Q Consensus 255 ~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~g 334 (630)
.....+++++++++||||||||+. ++..+... +.++|++|||+||.|+++.+.+. |+.+..++|
T Consensus 148 p~ar~l~rk~vlv~apTGSGKT~~----al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG 211 (677)
T 3rc3_A 148 PDARAMQRKIIFHSGPTNSGKTYH----AIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTG 211 (677)
T ss_dssp HHHHTSCCEEEEEECCTTSSHHHH----HHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECS
T ss_pred HHHHhcCCCEEEEEcCCCCCHHHH----HHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEEC
Confidence 334557899999999999999973 33333321 23599999999999999998776 888988888
Q ss_pred CCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcC-CCCcEEEEeecc
Q 006800 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-PDRQTLLFSATM 413 (630)
Q Consensus 335 g~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~-~~~q~l~~SAT~ 413 (630)
+...... .-....+++++|++.+. ....+++|||||||+|.+.+++..+..++..++ ...|++++|||.
T Consensus 212 ~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~ 281 (677)
T 3rc3_A 212 EERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI 281 (677)
T ss_dssp SCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH
T ss_pred CeeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH
Confidence 7654100 00012567777764332 246789999999999999999999999988887 778999999995
Q ss_pred cHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC
Q 006800 414 PRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493 (630)
Q Consensus 414 ~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~ 493 (630)
+.+..++... ..+..+..... .... ..... .+ ..+... ..+.+|||+++..++.++..|...
T Consensus 282 -~~i~~l~~~~-~~~~~v~~~~r---~~~l----~~~~~---~l----~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~ 343 (677)
T 3rc3_A 282 -DLVMELMYTT-GEEVEVRDYKR---LTPI----SVLDH---AL----ESLDNL--RPGDCIVCFSKNDIYSVSRQIEIR 343 (677)
T ss_dssp -HHHHHHHHHH-TCCEEEEECCC---SSCE----EECSS---CC----CSGGGC--CTTEEEECSSHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHhc-CCceEEEEeee---cchH----HHHHH---HH----HHHHhc--CCCCEEEEcCHHHHHHHHHHHHhc
Confidence 3445555443 33333322110 0000 00000 00 111111 345689999999999999999999
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhhc--CCceEEEEcCCcccCCCCCCccEEEEeCC--------------CCCHHHHHHH
Q 006800 494 GFKAAALHGDKDQASRMEILQKFKS--GVYHVLIATDVAARGLDIKSIKSVVNFDI--------------ARDMDMHVHR 557 (630)
Q Consensus 494 ~~~~~~ihg~~~~~~r~~~~~~F~~--g~~~VLvaT~~~~~Gldi~~v~~VI~~~~--------------p~~~~~y~Qr 557 (630)
++.+..+||+|++.+|..+++.|++ |+.+|||||+++++|||+ ++++||++++ |.+...|+||
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR 422 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQI 422 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHH
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHH
Confidence 9999999999999999999999999 889999999999999999 9999999999 7899999999
Q ss_pred hhhcccCCCC--CeEEEEEeccccHHHHHH
Q 006800 558 IGRTGRAGDK--DGTAYTLVTQKEARFAGE 585 (630)
Q Consensus 558 iGR~gR~g~~--~g~~~~l~~~~d~~~~~~ 585 (630)
+||+||.|.. .|.|+++.. .+...+.+
T Consensus 423 ~GRAGR~g~~g~~G~v~~l~~-~d~~~~~~ 451 (677)
T 3rc3_A 423 AGRAGRFSSRFKEGEVTTMNH-EDLSLLKE 451 (677)
T ss_dssp HTTBTCTTSSCSSEEEEESST-THHHHHHH
T ss_pred hcCCCCCCCCCCCEEEEEEec-chHHHHHH
Confidence 9999999943 476666544 44443333
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-33 Score=274.02 Aligned_cols=208 Identities=30% Similarity=0.536 Sum_probs=183.8
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCC
Q 006800 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (630)
Q Consensus 220 ~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (630)
.+....+|.++++++.+++.|.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++.++... ..++
T Consensus 9 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~ 83 (220)
T 1t6n_A 9 VSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQV 83 (220)
T ss_dssp -----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCC
T ss_pred ccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCE
Confidence 34456789999999999999999999999999999999999999999999999999999999999886432 2356
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHHc-CCcEEEeChHHHHHHHHccccccCceeEEE
Q 006800 300 IGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (630)
Q Consensus 300 ~vLil~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lV 377 (630)
++||++||++|+.|+++.+.++.... ++++..++|+.....+...+.. .++|+|+||++|..++......+..++++|
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lV 163 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 163 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEE
Confidence 89999999999999999999998765 7899999999888777776665 469999999999999988777889999999
Q ss_pred ecchhhhhc-CCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEE
Q 006800 378 LDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVT 432 (630)
Q Consensus 378 vDEah~~~~-~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~ 432 (630)
+||||++.+ .+|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.
T Consensus 164 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 164 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999987 4788889999999988999999999999999999999999998764
No 70
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.5e-32 Score=298.24 Aligned_cols=341 Identities=18% Similarity=0.212 Sum_probs=244.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006800 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|++.|..+.-.+..|+ |..+.||+|||+++.+|++.+.+. |..+.||+||+.||.|-++++..++..+|
T Consensus 75 r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~Lg 144 (822)
T 3jux_A 75 RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFLG 144 (822)
T ss_dssp CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHhC
Confidence 58899999998888887 999999999999999999866543 56699999999999999999999999999
Q ss_pred ceEEEEECC--------------------------------------------------CChHHHHHHHHcCCcEEEeCh
Q 006800 327 IRVSAVYGG--------------------------------------------------MSKLDQFKELKAGCEIVIATP 356 (630)
Q Consensus 327 ~~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~dIiv~Tp 356 (630)
+++.+++.. .+.. ..+... .|||+.+|.
T Consensus 145 lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-err~aY-~~DItYgTn 222 (822)
T 3jux_A 145 LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEI-TRKEAY-LCDVTYGTN 222 (822)
T ss_dssp CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBC-CHHHHH-HSSEEEEEH
T ss_pred CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHH-HHHHHh-cCCCEEccC
Confidence 999999982 1111 112222 389999999
Q ss_pred HHHH-HHHHcc------ccccCceeEEEecchhhhhc-C--------C-------cHHHHHHHHhhc-------------
Q 006800 357 GRLI-DMLKMK------ALTMSRVTYLVLDEADRMFD-L--------G-------FEPQIRSIVGQI------------- 400 (630)
Q Consensus 357 ~~L~-~~l~~~------~~~l~~i~~lVvDEah~~~~-~--------~-------~~~~v~~i~~~l------------- 400 (630)
.-|- ++|+.+ ....+.+.+.||||+|.++- . | +...+..+...+
T Consensus 223 ~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~ 302 (822)
T 3jux_A 223 NEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKAR 302 (822)
T ss_dssp HHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSS
T ss_pred cchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccC
Confidence 8774 455432 22356789999999998621 0 0 000001110000
Q ss_pred -------------------------------------------CC-----------------------------------
Q 006800 401 -------------------------------------------RP----------------------------------- 402 (630)
Q Consensus 401 -------------------------------------------~~----------------------------------- 402 (630)
..
T Consensus 303 ~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQai 382 (822)
T 3jux_A 303 TIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAI 382 (822)
T ss_dssp CEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHH
T ss_pred eEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHH
Confidence 00
Q ss_pred --------------------------CCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCcccc
Q 006800 403 --------------------------DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456 (630)
Q Consensus 403 --------------------------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k 456 (630)
..++.+||+|...+...+...|.-+ .+.+. .......+.+...++.....|
T Consensus 383 EaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IP-tnkp~~R~d~~d~vy~t~~eK 459 (822)
T 3jux_A 383 EAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIP-THKPMIRKDHDDLVFRTQKEK 459 (822)
T ss_dssp HHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECC-CSSCCCCEECCCEEESSHHHH
T ss_pred HHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEEC-CCCCcceeecCcEEEecHHHH
Confidence 1478999999988777666555322 33332 222222333322334456788
Q ss_pred HHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q 006800 457 LPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLD 535 (630)
Q Consensus 457 ~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gld 535 (630)
+..++..+.... ...++||||+|+..++.++..|.+.|+++.++||+..+.++..+...|+. ..|+|||++++||+|
T Consensus 460 ~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~VtVATdmAgRGtD 537 (822)
T 3jux_A 460 YEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GMVTIATNMAGRGTD 537 (822)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TCEEEEETTTTTTCC
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--CeEEEEcchhhCCcC
Confidence 888888887542 35689999999999999999999999999999998544444444444544 469999999999999
Q ss_pred CC--------CccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHH----HHHHHHHHHHc----CCCCCH
Q 006800 536 IK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF----AGELVNSLIAA----GQNVSM 599 (630)
Q Consensus 536 i~--------~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~----~~~l~~~l~~~----~~~vp~ 599 (630)
|+ +..+||+|+.|.++..|+||+||+||.| .+|.+++|++..|... ..++...+... +..+..
T Consensus 538 I~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG-~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~~~~i~~ 616 (822)
T 3jux_A 538 IKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQG-DPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQH 616 (822)
T ss_dssp CCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSS-CCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCSSSCBCC
T ss_pred ccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCC-CCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCCCceecc
Confidence 98 6779999999999999999999999999 6899999999988432 23444445443 334444
Q ss_pred HHHHHH
Q 006800 600 ELMDLA 605 (630)
Q Consensus 600 ~L~~la 605 (630)
.+..-+
T Consensus 617 ~~v~~~ 622 (822)
T 3jux_A 617 PMLSKL 622 (822)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-33 Score=320.34 Aligned_cols=375 Identities=16% Similarity=0.240 Sum_probs=248.5
Q ss_pred CcccCccCCccccCCCHHHHHHHHHHcCcee-c--cCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH-
Q 006800 185 FNKDFYQDSASISGMSEQDVMEYKKSLAIRV-S--GFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL- 260 (630)
Q Consensus 185 f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il- 260 (630)
+....|.....+..+..+.+..+........ . ....+.....|..+...+... .-..|+|+|.+++.+++
T Consensus 177 y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~egv~~l~~ 250 (800)
T 3mwy_W 177 YDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRDFQLTGINWMAF 250 (800)
T ss_dssp STTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCTHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCHHHHHHHHHHHH
Confidence 3345565555566667777777766442211 1 111122222333332222111 11479999999999887
Q ss_pred ---cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCC
Q 006800 261 ---SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (630)
Q Consensus 261 ---~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~ 337 (630)
.++++|++.+||+|||++++..+...+... .....+||||| ..|+.||..++.+++. ++++.+++|+..
T Consensus 251 ~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~ 322 (800)
T 3mwy_W 251 LWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQK 322 (800)
T ss_dssp HHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSSH
T ss_pred HhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHH
Confidence 889999999999999998655544333221 12344899999 6788999999999986 677777766655
Q ss_pred hHHHHHHHH------------cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCc
Q 006800 338 KLDQFKELK------------AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (630)
Q Consensus 338 ~~~~~~~l~------------~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q 405 (630)
......... ..++|+|+||+.+..... .+....+.+|||||||++.+.. ......+..++ ...
T Consensus 323 ~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l~-~~~ 397 (800)
T 3mwy_W 323 SRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLKNAE--SSLYESLNSFK-VAN 397 (800)
T ss_dssp HHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGCCSS--SHHHHHHTTSE-EEE
T ss_pred HHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhcCch--hHHHHHHHHhh-hcc
Confidence 444433321 247899999999976433 2223478999999999986543 34445555553 445
Q ss_pred EEEEeeccc----HHHHHHHHHHcCC-----------------------------CeEEEEcccc--cccccceEEEEEc
Q 006800 406 TLLFSATMP----RKVEKLAREILSD-----------------------------PVRVTVGEVG--MANEDITQVVHVI 450 (630)
Q Consensus 406 ~l~~SAT~~----~~~~~l~~~~~~~-----------------------------~~~i~~~~~~--~~~~~i~q~~~~~ 450 (630)
.+++||||. .++..++..+... |..+.-.... ............+
T Consensus 398 rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v 477 (800)
T 3mwy_W 398 RMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRV 477 (800)
T ss_dssp EEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEE
T ss_pred EEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEe
Confidence 688999983 2222222221111 1111000000 0000000111111
Q ss_pred C--------------------------------------------------------------------------Ccccc
Q 006800 451 P--------------------------------------------------------------------------SDAEK 456 (630)
Q Consensus 451 ~--------------------------------------------------------------------------~~~~k 456 (630)
. ..+.|
T Consensus 478 ~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K 557 (800)
T 3mwy_W 478 ELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGK 557 (800)
T ss_dssp CCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChH
Confidence 0 01335
Q ss_pred HHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCc---eEEEEcCCccc
Q 006800 457 LPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY---HVLIATDVAAR 532 (630)
Q Consensus 457 ~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~---~VLvaT~~~~~ 532 (630)
+..|..+|.... .+.++||||+....++.|..+|...|+.+..+||+++..+|..++..|++|.. .+|++|.+++.
T Consensus 558 ~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~ 637 (800)
T 3mwy_W 558 MVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGL 637 (800)
T ss_dssp HHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTT
T ss_pred HHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccC
Confidence 555555555443 34699999999999999999999999999999999999999999999998654 48999999999
Q ss_pred CCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCC-CCeEEEEEeccc
Q 006800 533 GLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQK 578 (630)
Q Consensus 533 Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~-~~g~~~~l~~~~ 578 (630)
|||++.+++||+||+||||..+.||+||++|.|+ +...+|.|++..
T Consensus 638 GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 638 GINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp TCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 9999999999999999999999999999999994 456777788775
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-31 Score=299.30 Aligned_cols=322 Identities=16% Similarity=0.179 Sum_probs=220.7
Q ss_pred CCCcHHHHHHHHHHH---------cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHH
Q 006800 246 EKPTSIQCQALPIIL---------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il---------~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~ 316 (630)
..|+|+|.+++.++. .++.+|++.+||+|||++++..+...+...+ .......++|||||+ .|+.||.+
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~-~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP-DCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT-TSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCc-cccCCCCcEEEEecH-HHHHHHHH
Confidence 469999999999984 4567999999999999986665554433222 111223468999997 88999999
Q ss_pred HHHHHhhhcCceEEEEECCCChHH--HHHHHHc------CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC
Q 006800 317 ETKKFAKSHGIRVSAVYGGMSKLD--QFKELKA------GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (630)
Q Consensus 317 ~~~~~~~~~~~~~~~~~gg~~~~~--~~~~l~~------~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~ 388 (630)
++.+++.. .+.+..+++|..... ....... .++|+|+||+.+..... .+....+++||+||||++.+..
T Consensus 132 E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 132 EVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh
Confidence 99999875 566777777654321 1222221 37899999999876432 3334578999999999987543
Q ss_pred cHHHHHHHHhhcCCCCcEEEEeecccHHH-------H-------------------------------------------
Q 006800 389 FEPQIRSIVGQIRPDRQTLLFSATMPRKV-------E------------------------------------------- 418 (630)
Q Consensus 389 ~~~~v~~i~~~l~~~~q~l~~SAT~~~~~-------~------------------------------------------- 418 (630)
......+..++ ....+++|||+-.+- .
T Consensus 209 --~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 209 --NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp --HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred --hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 23334444454 456799999983220 0
Q ss_pred ---HHHHHHcCCCeEEEEcccccccccceEEEEEcC--------------------------------------------
Q 006800 419 ---KLAREILSDPVRVTVGEVGMANEDITQVVHVIP-------------------------------------------- 451 (630)
Q Consensus 419 ---~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~-------------------------------------------- 451 (630)
.++..++.... ........+........+.
T Consensus 286 ~L~~~l~~~~lRR~---k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~h 362 (644)
T 1z3i_X 286 ELISIVNRCLIRRT---SDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNH 362 (644)
T ss_dssp HHHHHHHHHEECCC---GGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh---HHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCC
Confidence 00111110000 0000000000000011100
Q ss_pred ---------------------------------CccccHHHHHHhccCC--CCCCCEEEEccchhhHHHHHHHHHhCCCc
Q 006800 452 ---------------------------------SDAEKLPWLLEKLPGM--IDDGDVLVFASKKTTVDEIESQLAQKGFK 496 (630)
Q Consensus 452 ---------------------------------~~~~k~~~l~~~l~~~--~~~~~iLIF~~s~~~~~~l~~~L~~~~~~ 496 (630)
..+.|...+..++... ....++||||++...++.+..+|...|+.
T Consensus 363 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~ 442 (644)
T 1z3i_X 363 PALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYL 442 (644)
T ss_dssp THHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCC
Confidence 0112223333322221 13568999999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHhhcCCc---eEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCC-CCeEEE
Q 006800 497 AAALHGDKDQASRMEILQKFKSGVY---HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAY 572 (630)
Q Consensus 497 ~~~ihg~~~~~~r~~~~~~F~~g~~---~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~-~~g~~~ 572 (630)
+..+||++++.+|..+++.|++|.. .+||+|.++++|+|++++++||+||+|||+..|.|++||++|.|+ +...+|
T Consensus 443 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 443 YVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIY 522 (644)
T ss_dssp EEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEE
Confidence 9999999999999999999999875 489999999999999999999999999999999999999999994 346677
Q ss_pred EEeccc
Q 006800 573 TLVTQK 578 (630)
Q Consensus 573 ~l~~~~ 578 (630)
.|++..
T Consensus 523 ~lv~~~ 528 (644)
T 1z3i_X 523 RLLSTG 528 (644)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 788765
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=9.1e-31 Score=304.32 Aligned_cols=313 Identities=14% Similarity=0.116 Sum_probs=215.1
Q ss_pred CCCcHHHHHHHHHHHc--------------CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHH
Q 006800 246 EKPTSIQCQALPIILS--------------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~--------------g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 311 (630)
..|+|+|..|++.++. +++++++++||||||+++ ++++..+.. ....+++|||||+++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-----~~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-----LDFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-----CTTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-----cCCCceEEEEeCcHHHH
Confidence 3599999999999875 378999999999999986 566544422 12346899999999999
Q ss_pred HHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHccc--cccCceeEEEecchhhhhcCC
Q 006800 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKA--LTMSRVTYLVLDEADRMFDLG 388 (630)
Q Consensus 312 ~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~--~~l~~i~~lVvDEah~~~~~~ 388 (630)
.||.+.+..+... .+.++.+.......+. .+++|+|+||++|..++.... ..+..+.+||+||||++..
T Consensus 344 ~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~-- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF-- 415 (1038)
T ss_dssp HHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--
T ss_pred HHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--
Confidence 9999999988642 1235555555555664 468999999999999876532 2356789999999999763
Q ss_pred cHHHHHHHHhhcCCCCcEEEEeecccHHHH----HHHHHHcCC-----------------CeEEEEcccccccc------
Q 006800 389 FEPQIRSIVGQIRPDRQTLLFSATMPRKVE----KLAREILSD-----------------PVRVTVGEVGMANE------ 441 (630)
Q Consensus 389 ~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~----~l~~~~~~~-----------------~~~i~~~~~~~~~~------ 441 (630)
......++..++ ..++++|||||..... .....++++ |..+..........
T Consensus 416 -~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~ 493 (1038)
T 2w00_A 416 -GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETET 493 (1038)
T ss_dssp -HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCC
T ss_pred -hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccc
Confidence 334556666664 5899999999975321 112222233 22221111000000
Q ss_pred ------cceEEEEEcCCccccHHHHHHhc----cCC-------CCCCCEEEEccchhhHHHHHHHHHhCC----------
Q 006800 442 ------DITQVVHVIPSDAEKLPWLLEKL----PGM-------IDDGDVLVFASKKTTVDEIESQLAQKG---------- 494 (630)
Q Consensus 442 ------~i~q~~~~~~~~~~k~~~l~~~l----~~~-------~~~~~iLIF~~s~~~~~~l~~~L~~~~---------- 494 (630)
.+.+. ..+ ....+...+...+ ... ....++||||+++..|..++..|.+.+
T Consensus 494 d~~~~~~i~~~-~~l-~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~ 571 (1038)
T 2w00_A 494 DEKKLSAAENQ-QAF-LHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY 571 (1038)
T ss_dssp CHHHHHHTCST-TTT-TCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred cHHHHHHHHHH-HHh-cCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc
Confidence 00000 000 0112222322222 111 123579999999999999999997654
Q ss_pred --CcEE-EEeCC----------C----------CH-----------------------------HHHHHHHHHhhcCCce
Q 006800 495 --FKAA-ALHGD----------K----------DQ-----------------------------ASRMEILQKFKSGVYH 522 (630)
Q Consensus 495 --~~~~-~ihg~----------~----------~~-----------------------------~~r~~~~~~F~~g~~~ 522 (630)
+++. ++||. + ++ ..|..++..|++|+++
T Consensus 572 ~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ 651 (1038)
T 2w00_A 572 KPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID 651 (1038)
T ss_dssp CCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe
Confidence 5554 45542 2 22 1478899999999999
Q ss_pred EEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCC---CeEEEEEecc
Q 006800 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK---DGTAYTLVTQ 577 (630)
Q Consensus 523 VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~---~g~~~~l~~~ 577 (630)
|||+|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. .|.++.|+..
T Consensus 652 ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 652 LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 99999999999999999 788999999999999999999998832 3778887753
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=7.9e-28 Score=265.93 Aligned_cols=318 Identities=19% Similarity=0.209 Sum_probs=237.4
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006800 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 243 ~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
.|+ .|+++|..++|.+++|+ |..++||+|||++|++|++.+.+. |..++||+||++||.|.++.+..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 588 99999999999999998 999999999999999999765542 4569999999999999999999999
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHccc------cccC---ceeEEEecchhhhh-cCCc--
Q 006800 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMKA------LTMS---RVTYLVLDEADRMF-DLGF-- 389 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~------~~l~---~i~~lVvDEah~~~-~~~~-- 389 (630)
..+|+++.+++||.+.. .+....+++|+|+||++| .+++..+. ..++ .+.++||||+|+|+ +.+.
T Consensus 145 ~~lGLsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartP 222 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTP 222 (997)
T ss_dssp HTTTCCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSC
T ss_pred HhcCCeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCC
Confidence 99999999999998753 344445799999999999 78887653 4567 89999999999986 2111
Q ss_pred -------------HHHHHHHHhhcCC------------------------------------------------------
Q 006800 390 -------------EPQIRSIVGQIRP------------------------------------------------------ 402 (630)
Q Consensus 390 -------------~~~v~~i~~~l~~------------------------------------------------------ 402 (630)
...+..++..+..
T Consensus 223 LIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~ 302 (997)
T 2ipc_A 223 LIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAH 302 (997)
T ss_dssp EEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHH
T ss_pred eeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHH
Confidence 0112222221110
Q ss_pred ---------------------------------------------------------------------------CCcEE
Q 006800 403 ---------------------------------------------------------------------------DRQTL 407 (630)
Q Consensus 403 ---------------------------------------------------------------------------~~q~l 407 (630)
...+.
T Consensus 303 ~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLs 382 (997)
T 2ipc_A 303 MLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRA 382 (997)
T ss_dssp HHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHhe
Confidence 03577
Q ss_pred EEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCC-CCCCEEEEccchhhHHHH
Q 006800 408 LFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEI 486 (630)
Q Consensus 408 ~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l 486 (630)
+||+|...+...+...|--+ +. .+ +.............++.+...|+..++..+.... .+.||||+|.|....+.|
T Consensus 383 GMTGTA~tE~~Ef~~iY~l~-Vv-~I-PTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~L 459 (997)
T 2ipc_A 383 GMTGTAKTEEKEFQEIYGMD-VV-VV-PTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERL 459 (997)
T ss_dssp EEESSCGGGHHHHHHHHCCC-EE-EC-CCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHH
T ss_pred ecCCCchHHHHHHHHHhCCC-EE-Ec-CCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHH
Confidence 78888776655555555433 22 22 1222222333344455667788888887776543 356899999999999999
Q ss_pred HHHHH---------------------------------------------------------------------------
Q 006800 487 ESQLA--------------------------------------------------------------------------- 491 (630)
Q Consensus 487 ~~~L~--------------------------------------------------------------------------- 491 (630)
+.+|.
T Consensus 460 S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (997)
T 2ipc_A 460 SQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAV 539 (997)
T ss_dssp HHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHH
Confidence 99998
Q ss_pred -hCCCcEEEEeCCCCHHHHHHHHHHhhcCC-ceEEEEcCCcccCCCCCCc-------------------c----------
Q 006800 492 -QKGFKAAALHGDKDQASRMEILQKFKSGV-YHVLIATDVAARGLDIKSI-------------------K---------- 540 (630)
Q Consensus 492 -~~~~~~~~ihg~~~~~~r~~~~~~F~~g~-~~VLvaT~~~~~Gldi~~v-------------------~---------- 540 (630)
+.|++..+++.... +++.-+-. +.|+ ..|-|||++++||-||.-- .
T Consensus 540 ~~~gI~H~VLNAK~h--e~EAeIIA-qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (997)
T 2ipc_A 540 LRQGIPHQVLNAKHH--AREAEIVA-QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKM 616 (997)
T ss_dssp HHHCCCCCEECSSSH--HHHHHHHH-TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHH
T ss_pred HHcCCCeeeccccch--HHHHHHHH-hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccc
Confidence 56777777776533 33332222 3444 5699999999999999743 1
Q ss_pred ---------------------------------------------EEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEe
Q 006800 541 ---------------------------------------------SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (630)
Q Consensus 541 ---------------------------------------------~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~ 575 (630)
+||--..+.|...-.|..||+||.| .+|.+.+|+
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQG-DPGsSrF~L 695 (997)
T 2ipc_A 617 VAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQG-DPGGSRFYV 695 (997)
T ss_dssp HHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSS-CCCEEEEEE
T ss_pred cccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCC-CCCCeEEEE
Confidence 7888888999999999999999999 589999999
Q ss_pred ccccH
Q 006800 576 TQKEA 580 (630)
Q Consensus 576 ~~~d~ 580 (630)
+-+|.
T Consensus 696 SLeDd 700 (997)
T 2ipc_A 696 SFDDD 700 (997)
T ss_dssp ESSSH
T ss_pred ECChH
Confidence 98774
No 75
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=232.74 Aligned_cols=180 Identities=36% Similarity=0.540 Sum_probs=148.4
Q ss_pred HHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEe
Q 006800 422 REILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALH 501 (630)
Q Consensus 422 ~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ih 501 (630)
..|+.+|..+.++........+.|.+..+. ...|...|...+... .+++||||+++..++.++..|...++.+..+|
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVK-EEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp -------------------CCSEEEEEECC-GGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcC-hHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 457888999988887778889999998885 458999999988764 46899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccc-cH
Q 006800 502 GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EA 580 (630)
Q Consensus 502 g~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~-d~ 580 (630)
|++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| ..|.+++|+++. +.
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g-~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSG-NTGIATTFINKACDE 164 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC----CCEEEEEECTTSCH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCC-CCcEEEEEEcCchhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 579999999986 78
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHH
Q 006800 581 RFAGELVNSLIAAGQNVSMELMDLA 605 (630)
Q Consensus 581 ~~~~~l~~~l~~~~~~vp~~L~~la 605 (630)
..+..+.+.|...++.+|++|.+++
T Consensus 165 ~~~~~l~~~l~~~~~~~p~~l~~~~ 189 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVPPVLQVLH 189 (191)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHSTT
T ss_pred HHHHHHHHHHHHccCcCCHHHHhhc
Confidence 8899999999999999999998775
No 76
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=224.69 Aligned_cols=168 Identities=38% Similarity=0.609 Sum_probs=141.8
Q ss_pred cccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhh
Q 006800 438 MANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (630)
Q Consensus 438 ~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~ 517 (630)
....++.|.+..++ ...|...|..++......+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|+
T Consensus 15 ~~~~~i~q~~~~v~-~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 15 STSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp -CCTTEEEEEEECC-GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCceEEEEEeC-cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 45668899988886 46799999988877655779999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCC
Q 006800 518 SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNV 597 (630)
Q Consensus 518 ~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~v 597 (630)
+|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| ..|.+++|+++.+...+.++.+.+...++.+
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 172 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG-NLGLATSFFNERNINITKDLLDLLVEAKQEV 172 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTT-SCEEEEEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCC-CCcEEEEEEchhhHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999 5799999999999999999999999999999
Q ss_pred CHHHHHHHHh
Q 006800 598 SMELMDLAMK 607 (630)
Q Consensus 598 p~~L~~la~~ 607 (630)
|.+|.++|..
T Consensus 173 ~~~l~~~a~~ 182 (185)
T 2jgn_A 173 PSWLENMAYE 182 (185)
T ss_dssp CHHHHHHHC-
T ss_pred CHHHHHHHHH
Confidence 9999999854
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=5.3e-27 Score=264.05 Aligned_cols=174 Identities=21% Similarity=0.297 Sum_probs=133.0
Q ss_pred CCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCC-CCCCEEEEccch
Q 006800 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKK 480 (630)
Q Consensus 402 ~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~ 480 (630)
..+|+++||||+++..... ........+...+.... . +.. .....+...++..+.... ...++||||+++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-~---i~v-~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDP-L---VRV-KPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCC-E---EEE-ECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCC-e---EEE-ecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3679999999998653211 11111111111111111 1 111 122345566666555433 456999999999
Q ss_pred hhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCC-----CCCHHHHH
Q 006800 481 TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-----ARDMDMHV 555 (630)
Q Consensus 481 ~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~-----p~~~~~y~ 555 (630)
..++.++.+|...|+.+..+||++++.+|..+++.|+.|++.|||||+++++|+|+|++++||+++. |.++..|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhhhcccCCCCCeEEEEEeccccHHHHHHH
Q 006800 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586 (630)
Q Consensus 556 QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l 586 (630)
||+||+||.| .|.+++|+++.+......+
T Consensus 530 Qr~GRagR~~--~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 530 QTIGRAARNA--RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp HHHGGGTTST--TCEEEEECSSCCHHHHHHH
T ss_pred HHHCccCcCC--CCEEEEEEcCCCHHHHHHH
Confidence 9999999986 6999999998765544433
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=5.8e-26 Score=255.50 Aligned_cols=172 Identities=21% Similarity=0.317 Sum_probs=132.8
Q ss_pred CCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCC-CCCCEEEEccch
Q 006800 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKK 480 (630)
Q Consensus 402 ~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~ 480 (630)
..+|+++||||+++..... ........+...+.... . +.. .....+...++..+.... ...++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-~---i~v-~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP-L---IDV-RPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC-E---EEE-ECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC-e---EEE-ecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 4689999999998653222 12222222211111111 1 111 122345556656555443 456899999999
Q ss_pred hhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCC-----CCCHHHHH
Q 006800 481 TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-----ARDMDMHV 555 (630)
Q Consensus 481 ~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~-----p~~~~~y~ 555 (630)
..++.++..|...|+.+..+||++++.+|..+++.|++|++.|||||+++++|+|+|++++||+++. |.+...|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhhhcccCCCCCeEEEEEeccccHHHHH
Q 006800 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAG 584 (630)
Q Consensus 556 QriGR~gR~g~~~g~~~~l~~~~d~~~~~ 584 (630)
||+||+||.+ .|.+++|+++.+.....
T Consensus 536 Qr~GRagR~~--~G~~i~~~~~~~~~~~~ 562 (661)
T 2d7d_A 536 QTIGRAARNA--EGRVIMYADKITKSMEI 562 (661)
T ss_dssp HHHHTTTTST--TCEEEEECSSCCHHHHH
T ss_pred HHhCcccCCC--CCEEEEEEeCCCHHHHH
Confidence 9999999984 79999999987654443
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=3.3e-25 Score=208.12 Aligned_cols=153 Identities=29% Similarity=0.493 Sum_probs=136.1
Q ss_pred ccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhc
Q 006800 439 ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (630)
Q Consensus 439 ~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~ 518 (630)
....+.|.+..++....|...|..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 35578899998877666999999888765 56799999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEcCCcccCCCCCCccEEEEeCCC------CCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHH
Q 006800 519 GVYHVLIATDVAARGLDIKSIKSVVNFDIA------RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (630)
Q Consensus 519 g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p------~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~ 592 (630)
|+.+|||||+++++|+|+|++++||+|++| .++..|+||+||+||.| +.|.+++|+++.+...+..+.+.+..
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFG-KKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC-----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCC-CCceEEEEEccchHHHHHHHHHHhcC
Confidence 999999999999999999999999999999 89999999999999999 67999999999998888888777644
Q ss_pred c
Q 006800 593 A 593 (630)
Q Consensus 593 ~ 593 (630)
.
T Consensus 162 ~ 162 (175)
T 2rb4_A 162 S 162 (175)
T ss_dssp C
T ss_pred c
Confidence 3
No 80
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.93 E-value=5.3e-25 Score=204.14 Aligned_cols=150 Identities=33% Similarity=0.613 Sum_probs=137.1
Q ss_pred cccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhh
Q 006800 438 MANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (630)
Q Consensus 438 ~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~ 517 (630)
....++.|.+..+. ...|...|..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|+
T Consensus 5 ~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 5 LTTRNIEHAVIQVR-EENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp -CCCCEEEEEEECC-GGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cCcccceEEEEECC-hHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 34556888888775 467888888888654 4579999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHH
Q 006800 518 SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (630)
Q Consensus 518 ~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l 590 (630)
+|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| +.|.+++|+++.+...+.++.+.+
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~i~~~~ 154 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAG-NKGKAISFVTAFEKRFLADIEEYI 154 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTT-CCEEEEEEECGGGHHHHHHHHHHH
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCC-CCceEEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 679999999999999988888766
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=6.5e-26 Score=210.76 Aligned_cols=158 Identities=27% Similarity=0.479 Sum_probs=138.1
Q ss_pred cceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCc
Q 006800 442 DITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521 (630)
Q Consensus 442 ~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~ 521 (630)
.+.|.+..++....|...|..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 56788887766555888888888764 56799999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCHHH
Q 006800 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMEL 601 (630)
Q Consensus 522 ~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L 601 (630)
+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| +.|.+++|+++.+...+..+.+.+....+.+|..+
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG-RKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 160 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC------CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC-CCceEEEEEcchHHHHHHHHHHHHccCccccCccH
Confidence 99999999999999999999999999999999999999999999 67999999999999999988888766666666543
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=4.3e-25 Score=206.51 Aligned_cols=159 Identities=26% Similarity=0.417 Sum_probs=138.9
Q ss_pred cccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcC
Q 006800 440 NEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519 (630)
Q Consensus 440 ~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g 519 (630)
...+.|.+..++ ...|...|..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|
T Consensus 3 ~~~i~q~~~~~~-~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 3 LHGLQQYYVKLK-DNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp --CCEEEEEECC-GGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCCeEEEEEECC-hHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 346778887775 467999888888754 457999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccc-cHHHHHHHHHHHHHcCCCCC
Q 006800 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAGQNVS 598 (630)
Q Consensus 520 ~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~-d~~~~~~l~~~l~~~~~~vp 598 (630)
+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| ..|.+++|+++. +...+..+.+.+...-..+|
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNDVQDRFEVNISELP 159 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGG-CCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCC-CCcEEEEEEcChhHHHHHHHHHHHHhcchhhCC
Confidence 9999999999999999999999999999999999999999999999 579999999976 56777788777766666677
Q ss_pred HHH
Q 006800 599 MEL 601 (630)
Q Consensus 599 ~~L 601 (630)
.++
T Consensus 160 ~~~ 162 (172)
T 1t5i_A 160 DEI 162 (172)
T ss_dssp ---
T ss_pred hhh
Confidence 664
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=9.5e-24 Score=204.33 Aligned_cols=140 Identities=36% Similarity=0.494 Sum_probs=128.1
Q ss_pred CccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q 006800 452 SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (630)
Q Consensus 452 ~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~ 531 (630)
....|...|..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 14 ~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 92 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (212)
T ss_dssp CTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred CHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh
Confidence 3467888888887643 467999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHc
Q 006800 532 RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA 593 (630)
Q Consensus 532 ~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~ 593 (630)
+|+|+|++++||+|++|+++..|+||+||+||.| +.|.+++|+++.+...+..+.+.+...
T Consensus 93 ~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g-~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 93 RGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAG-RGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp CSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC---BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred cCCCCccCcEEEECCCCcCHHHHHHHhcccCCCC-CCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999 579999999999998888888777543
No 84
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=9e-24 Score=205.03 Aligned_cols=166 Identities=23% Similarity=0.204 Sum_probs=123.3
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHH-HHHHHHHHh
Q 006800 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ-IYLETKKFA 322 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q-~~~~~~~~~ 322 (630)
....|+|+|.++++.+++++++++.+|||+|||++|+++++.++.... ....++++||++||++|+.| +.+.+.++.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKK--KASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHH--HTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcc--cccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 446899999999999999999999999999999999999987764321 11236789999999999999 778888887
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccc------cccCceeEEEecchhhhhcCCcHHHHHHH
Q 006800 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA------LTMSRVTYLVLDEADRMFDLGFEPQIRSI 396 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~------~~l~~i~~lVvDEah~~~~~~~~~~v~~i 396 (630)
.. ++++..++|+......+..+..+++|+|+||+.|...+.... ..+..+++|||||||++...++...+...
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 64 788888888776555555555679999999999999887643 55788999999999999877666555332
Q ss_pred H-hhc-------------CCCCcEEEEeec
Q 006800 397 V-GQI-------------RPDRQTLLFSAT 412 (630)
Q Consensus 397 ~-~~l-------------~~~~q~l~~SAT 412 (630)
+ ... .+..++|+||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 2 111 167899999998
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=8.4e-23 Score=207.11 Aligned_cols=147 Identities=34% Similarity=0.474 Sum_probs=129.4
Q ss_pred ceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCce
Q 006800 443 ITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (630)
Q Consensus 443 i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~ 522 (630)
+.+.+..+. ...|...|..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+
T Consensus 3 v~~~~i~~~-~~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 3 YEEEAVPAP-VRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp SEEEEEECC-SSSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred eEEEEEECC-HHHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 455555554 467998888887654 378999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHH
Q 006800 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (630)
Q Consensus 523 VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~ 592 (630)
|||||+++++|+|||++++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+..
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g-~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAG-RGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC------CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCC-CCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999 57999999999998888888777654
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=2.3e-22 Score=221.78 Aligned_cols=299 Identities=18% Similarity=0.230 Sum_probs=168.9
Q ss_pred CCCCCcHHHHHHHH----HHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHH
Q 006800 244 GYEKPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~----~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 319 (630)
|| .|+|+|.+++. .+..|+++++.+|||+|||++|++|++.+ +++++|++||++|+.|+.+++.
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~~ 72 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNAK 72 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHHG
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 55 79999999865 45688999999999999999999999764 5789999999999999998877
Q ss_pred HHhhhcCceEEEEECCCC--------hH------------------------HHH---------------HHHHcCCcEE
Q 006800 320 KFAKSHGIRVSAVYGGMS--------KL------------------------DQF---------------KELKAGCEIV 352 (630)
Q Consensus 320 ~~~~~~~~~~~~~~gg~~--------~~------------------------~~~---------------~~l~~~~dIi 352 (630)
++ ++++..+.|... .. +.+ +....+++||
T Consensus 73 ~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiV 148 (540)
T 2vl7_A 73 LL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVI 148 (540)
T ss_dssp GG----TCCEEEC---------------------------------------------------------CTTGGGCSEE
T ss_pred hc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEE
Confidence 74 555554443221 00 000 1112458999
Q ss_pred EeChHHHHHHHHcccc-------ccCceeEEEecchhhhhcCC-----------cHH-----------------------
Q 006800 353 IATPGRLIDMLKMKAL-------TMSRVTYLVLDEADRMFDLG-----------FEP----------------------- 391 (630)
Q Consensus 353 v~Tp~~L~~~l~~~~~-------~l~~i~~lVvDEah~~~~~~-----------~~~----------------------- 391 (630)
|+||..|.+-...... .+....++||||||+|.+.. +..
T Consensus 149 V~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~ 228 (540)
T 2vl7_A 149 AMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYI 228 (540)
T ss_dssp EEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred EEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 9999999875543322 24678899999999983210 000
Q ss_pred -------------------------------HHHHHHhh-----------------------------------cCC---
Q 006800 392 -------------------------------QIRSIVGQ-----------------------------------IRP--- 402 (630)
Q Consensus 392 -------------------------------~v~~i~~~-----------------------------------l~~--- 402 (630)
.+..++.. +.|
T Consensus 229 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~ 308 (540)
T 2vl7_A 229 NLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDV 308 (540)
T ss_dssp HHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCH
T ss_pred HHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHH
Confidence 00000000 000
Q ss_pred ----------CCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEE--cCCcccc----HHHHHHhccC
Q 006800 403 ----------DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHV--IPSDAEK----LPWLLEKLPG 466 (630)
Q Consensus 403 ----------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~--~~~~~~k----~~~l~~~l~~ 466 (630)
...+|++|||+++.+. +...| ....... . ...+.+.. ++++... ...+...+..
T Consensus 309 ~~~l~~~~~~~~~~IltSATL~p~~~-~~~~f-----~~~~~~~-~---g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~ 378 (540)
T 2vl7_A 309 NQLIEDALNVKTFKVLMSGTLPESLT-LTNSY-----KIVVNES-Y---GRGEYYYCPNVTSELRKRNSNIPIYSILLKR 378 (540)
T ss_dssp HHHHHHHTCCSSCEEEEESSCCTTCC-CTTEE-----EEECCCC-----CCCEEEECTTCCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccCCeEEEcccCCCCcc-cchhc-----CCchhhe-e---cCCcceeccccCCCcccccCHHHHHHHHHHH
Confidence 0112556666554100 00000 0000000 0 01111111 1111111 1223333322
Q ss_pred C--CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEE--EcCCcccCCCCCC----
Q 006800 467 M--IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI--ATDVAARGLDIKS---- 538 (630)
Q Consensus 467 ~--~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLv--aT~~~~~Gldi~~---- 538 (630)
. ...+++|||++|+..++.++..|.. +. ..++|.. ..|.++++.|+.|. .||+ +|..+.+|||+|+
T Consensus 379 ~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~ 452 (540)
T 2vl7_A 379 IYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENL 452 (540)
T ss_dssp HHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------C
T ss_pred HHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCccc
Confidence 2 1367899999999999999988865 33 4556654 46888999999864 6776 8899999999998
Q ss_pred ccEEEEeCCCCC----H--------------------------HHHHHHhhhcccCCCCCeEEEEE
Q 006800 539 IKSVVNFDIARD----M--------------------------DMHVHRIGRTGRAGDKDGTAYTL 574 (630)
Q Consensus 539 v~~VI~~~~p~~----~--------------------------~~y~QriGR~gR~g~~~g~~~~l 574 (630)
+++||++++|.. + ....|.+||+.|..+..|.++++
T Consensus 453 ~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 453 FESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp EEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEE
T ss_pred ccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEE
Confidence 899999998842 1 12359999999987556765544
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.81 E-value=1.4e-24 Score=202.75 Aligned_cols=148 Identities=34% Similarity=0.502 Sum_probs=132.6
Q ss_pred cceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCc
Q 006800 442 DITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521 (630)
Q Consensus 442 ~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~ 521 (630)
++.|.+..++....|...|..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 45566666654467888888777653 45789999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHH
Q 006800 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (630)
Q Consensus 522 ~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~ 591 (630)
+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| +.|.+++|++..+...+..+.+.+.
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG-RKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 99999999999999999999999999999999999999999999 5799999999999888887777653
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.87 E-value=3.5e-20 Score=205.18 Aligned_cols=307 Identities=17% Similarity=0.118 Sum_probs=197.3
Q ss_pred CCcHHHHHHHHH----HHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006800 247 KPTSIQCQALPI----ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 247 ~~~~~Q~~~i~~----il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
.|+|.|.+.+.. +..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 689999997764 5589999999999999999999999872 6789999999999999999999887
Q ss_pred hhcCceEEEEECCCC---------------------------------hHHHH------------------HHHHcCCcE
Q 006800 323 KSHGIRVSAVYGGMS---------------------------------KLDQF------------------KELKAGCEI 351 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~---------------------------------~~~~~------------------~~l~~~~dI 351 (630)
...++++..+.|+.+ ..... +....+++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 766888887766321 11221 233456899
Q ss_pred EEeChHHHHHHHHcccccc-CceeEEEecchhhhhcCC------------------------------------------
Q 006800 352 VIATPGRLIDMLKMKALTM-SRVTYLVLDEADRMFDLG------------------------------------------ 388 (630)
Q Consensus 352 iv~Tp~~L~~~l~~~~~~l-~~i~~lVvDEah~~~~~~------------------------------------------ 388 (630)
||+||..|.+...+....+ ....++||||||+|.+ .
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~ 230 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLP 230 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998754443333 4678999999998755 1
Q ss_pred -------------cHHHHHH----------------------------HH----------------------------hh
Q 006800 389 -------------FEPQIRS----------------------------IV----------------------------GQ 399 (630)
Q Consensus 389 -------------~~~~v~~----------------------------i~----------------------------~~ 399 (630)
+...+.. .+ ..
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~ 310 (551)
T 3crv_A 231 DEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNL 310 (551)
T ss_dssp CSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGG
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHH
Confidence 0000000 00 00
Q ss_pred cCCC-CcEEEEeecccHHHHHHHHHHcCC-CeEEEE--cccccccccceEEEEEcC----Ccc-----ccHHHHHHhccC
Q 006800 400 IRPD-RQTLLFSATMPRKVEKLAREILSD-PVRVTV--GEVGMANEDITQVVHVIP----SDA-----EKLPWLLEKLPG 466 (630)
Q Consensus 400 l~~~-~q~l~~SAT~~~~~~~l~~~~~~~-~~~i~~--~~~~~~~~~i~q~~~~~~----~~~-----~k~~~l~~~l~~ 466 (630)
+... +.+|++|||+.+ ...+...+... +....+ ...+... ..+...+++ ... .-...+...+..
T Consensus 311 ~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~ 387 (551)
T 3crv_A 311 LNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLK 387 (551)
T ss_dssp GGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHH
T ss_pred HhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHH
Confidence 1123 688999999987 33344433222 221100 0011111 122222221 111 112334443333
Q ss_pred CC--CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEc--CCcccCCCCC---C-
Q 006800 467 MI--DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT--DVAARGLDIK---S- 538 (630)
Q Consensus 467 ~~--~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT--~~~~~Gldi~---~- 538 (630)
.. ..|++|||++|+...+.++.. .+..+..=..+++ +..+++.|+.+...||+|| ..+.+|||+| +
T Consensus 388 l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~ 461 (551)
T 3crv_A 388 IYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRS 461 (551)
T ss_dssp HHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEE
T ss_pred HHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCc
Confidence 21 367899999999999999873 3444433323445 3556778854445899998 6889999999 3
Q ss_pred -ccEEEEeCCCCC---H----------------HH-----------HHHHhhhcccCCCCCeEEEEE
Q 006800 539 -IKSVVNFDIARD---M----------------DM-----------HVHRIGRTGRAGDKDGTAYTL 574 (630)
Q Consensus 539 -v~~VI~~~~p~~---~----------------~~-----------y~QriGR~gR~g~~~g~~~~l 574 (630)
++.||+.++|.. + .. ..|.+||+-|..+..|.++++
T Consensus 462 ~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 462 LISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp SEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred ceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEe
Confidence 889999887641 1 11 238999999987445555544
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=5.7e-22 Score=200.90 Aligned_cols=155 Identities=19% Similarity=0.115 Sum_probs=126.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006800 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
..|+|+|.++++.++.+++.+++++||+|||+++++++..++.. .+.++|||+||++|+.||++++.++....
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 37999999999999988899999999999999998887776532 13479999999999999999999997655
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCc
Q 006800 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (630)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q 405 (630)
+..+..+++|..... ....+++|+|+||+.+... ....+..+++|||||||++. ...+..++..+...++
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCCe
Confidence 667888888866542 1224589999999877543 23356789999999999987 3578888888888999
Q ss_pred EEEEeecccHHH
Q 006800 406 TLLFSATMPRKV 417 (630)
Q Consensus 406 ~l~~SAT~~~~~ 417 (630)
+++||||+++..
T Consensus 255 ~l~lSATp~~~~ 266 (282)
T 1rif_A 255 KFGLSGSLRDGK 266 (282)
T ss_dssp EEEECSSCCTTS
T ss_pred EEEEeCCCCCcc
Confidence 999999998654
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=191.59 Aligned_cols=175 Identities=17% Similarity=0.188 Sum_probs=129.5
Q ss_pred HHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHH
Q 006800 241 SKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (630)
Q Consensus 241 ~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 320 (630)
.......++++|.++++.+..|++++++|+||||||+++.++++.+...... ..++++++++|+++|+.|+.+.+..
T Consensus 55 ~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 55 QERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp HHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHH
Confidence 3333446789999999999999999999999999999999998887765431 2356899999999999999888776
Q ss_pred Hhhh-cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhh-hcCCcH-HHHHHHH
Q 006800 321 FAKS-HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM-FDLGFE-PQIRSIV 397 (630)
Q Consensus 321 ~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~-~~~~~~-~~v~~i~ 397 (630)
.... .+..+......... ....+++|+||||++|.+++.. .++++++|||||||++ ++++|. ..+..++
T Consensus 132 ~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 132 ERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp TTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred HhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 5432 23333332221111 0013488999999999999875 4789999999999986 677766 3555555
Q ss_pred hhcCCCCcEEEEeecccHHHHHHHHHHcCCCe
Q 006800 398 GQIRPDRQTLLFSATMPRKVEKLAREILSDPV 429 (630)
Q Consensus 398 ~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~ 429 (630)
... ++.|+++||||++.+. +.+.+...|+
T Consensus 204 ~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 204 QAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred hhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 554 6899999999999775 5555555554
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.81 E-value=1.4e-18 Score=193.75 Aligned_cols=313 Identities=16% Similarity=0.164 Sum_probs=192.8
Q ss_pred CCcHHHHHHHH----HHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006800 247 KPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 247 ~~~~~Q~~~i~----~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
.|+|.|.+.+. .+.+|+++++.||||+|||++|++|++.++.. .+++++|++||++|+.|+.+++.++.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 58999999875 45689999999999999999999999998753 26789999999999999999999998
Q ss_pred hhcCceEEEEECCCC--h--H-----------H---HHH-----------------------------------------
Q 006800 323 KSHGIRVSAVYGGMS--K--L-----------D---QFK----------------------------------------- 343 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~--~--~-----------~---~~~----------------------------------------- 343 (630)
...++++..+.|+.+ . . . ...
T Consensus 76 ~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~ 155 (620)
T 4a15_A 76 STMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFY 155 (620)
T ss_dssp HHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHH
T ss_pred hccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHH
Confidence 776777776655322 0 0 0 000
Q ss_pred ---------------HHHcCCcEEEeChHHHHHHHHccc----c-ccCceeEEEecchhhhhc-----------------
Q 006800 344 ---------------ELKAGCEIVIATPGRLIDMLKMKA----L-TMSRVTYLVLDEADRMFD----------------- 386 (630)
Q Consensus 344 ---------------~l~~~~dIiv~Tp~~L~~~l~~~~----~-~l~~i~~lVvDEah~~~~----------------- 386 (630)
.....+||||+++..|.+..-+.. . ....-.++||||||++.+
T Consensus 156 ~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~ 235 (620)
T 4a15_A 156 DYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNR 235 (620)
T ss_dssp HHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHH
T ss_pred HHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHH
Confidence 011128999999988765443221 1 123557999999998622
Q ss_pred ---------CCc------H----H---------------------------------------HHHH-------HHh---
Q 006800 387 ---------LGF------E----P---------------------------------------QIRS-------IVG--- 398 (630)
Q Consensus 387 ---------~~~------~----~---------------------------------------~v~~-------i~~--- 398 (630)
..+ . . .+.. +..
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 315 (620)
T 4a15_A 236 ADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVE 315 (620)
T ss_dssp HHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0 0000 000
Q ss_pred ----------------------h---cC------------------------------CCCcEEEEeecccHHHHHHHHH
Q 006800 399 ----------------------Q---IR------------------------------PDRQTLLFSATMPRKVEKLARE 423 (630)
Q Consensus 399 ----------------------~---l~------------------------------~~~q~l~~SAT~~~~~~~l~~~ 423 (630)
. .. ..+.+|++|||+.+ +..+...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~ 394 (620)
T 4a15_A 316 NEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDI 394 (620)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHH
T ss_pred hhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHH
Confidence 0 00 01246899999986 4444444
Q ss_pred HcCCCeEEEEcccccccccceEEEEEcCCc--------cccHHHHHHhccCCC--CCCCEEEEccchhhHHHHHHHHHhC
Q 006800 424 ILSDPVRVTVGEVGMANEDITQVVHVIPSD--------AEKLPWLLEKLPGMI--DDGDVLVFASKKTTVDEIESQLAQK 493 (630)
Q Consensus 424 ~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~--------~~k~~~l~~~l~~~~--~~~~iLIF~~s~~~~~~l~~~L~~~ 493 (630)
+...+..+..+.. ....+ +...+...- ..-...+...+.... ..|++|||++|+...+.++..|.
T Consensus 395 lGl~~~~~~~~sp-f~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~-- 469 (620)
T 4a15_A 395 TGFEIPFKKIGEI-FPPEN--RYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS-- 469 (620)
T ss_dssp HCCCCCEEECCCC-SCGGG--EEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--
T ss_pred hCCCceeeecCCC-CCHHH--eEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--
Confidence 4333333332221 11111 111111111 111222333332221 36789999999999999998886
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC--CcccCCCCCC--ccEEEEeCCCCC-------------------
Q 006800 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD--VAARGLDIKS--IKSVVNFDIARD------------------- 550 (630)
Q Consensus 494 ~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~--~~~~Gldi~~--v~~VI~~~~p~~------------------- 550 (630)
.+... ...+++..++..+++.|+ +...||++|. .+.+|||+++ .+.||+.++|..
T Consensus 470 ~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~ 547 (620)
T 4a15_A 470 FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGK 547 (620)
T ss_dssp SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSC
T ss_pred hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCC
Confidence 23222 444555678999999999 8889999984 8889999997 789999988742
Q ss_pred HH----------HHHHHhhhcccCCCCCeEEEEE
Q 006800 551 MD----------MHVHRIGRTGRAGDKDGTAYTL 574 (630)
Q Consensus 551 ~~----------~y~QriGR~gR~g~~~g~~~~l 574 (630)
.- ...|.+||+-|.-+..|.++++
T Consensus 548 ~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 548 GWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred CchHHhHHHHHHHHHHHhCccccCCCceEEEEEE
Confidence 11 1259999999987556766665
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.78 E-value=1.5e-18 Score=170.67 Aligned_cols=139 Identities=22% Similarity=0.149 Sum_probs=110.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006800 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
..|+++|.++++.++.++++++++|||+|||.+++.++... +.++||++|+++|+.||.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 47999999999999999999999999999999887766532 456999999999999999988884
Q ss_pred Cce-EEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCC
Q 006800 326 GIR-VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (630)
Q Consensus 326 ~~~-~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~ 404 (630)
++. +..+.|+... ..+|+|+||+.+...... ....+++|||||||++....+. .++..++ ..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~ 219 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-AP 219 (237)
T ss_dssp CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTCC-CS
T ss_pred CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhcc-CC
Confidence 677 7777666542 479999999998766542 1346899999999998766543 3445554 67
Q ss_pred cEEEEeecccHH
Q 006800 405 QTLLFSATMPRK 416 (630)
Q Consensus 405 q~l~~SAT~~~~ 416 (630)
++++||||+++.
T Consensus 220 ~~l~LSATp~r~ 231 (237)
T 2fz4_A 220 FRLGLTATFERE 231 (237)
T ss_dssp EEEEEEESCC--
T ss_pred EEEEEecCCCCC
Confidence 899999999865
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.75 E-value=2.2e-18 Score=172.52 Aligned_cols=127 Identities=15% Similarity=0.276 Sum_probs=101.1
Q ss_pred CccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHhhcC-Cce-EEEEc
Q 006800 452 SDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSG-VYH-VLIAT 527 (630)
Q Consensus 452 ~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~r~~~~~~F~~g-~~~-VLvaT 527 (630)
....|+..|..++.... ...++||||++...++.+...|... |+.+..+||++++.+|..+++.|++| ..+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 35678888888887653 4579999999999999999999885 99999999999999999999999998 676 78899
Q ss_pred CCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCC-CCeEEEEEeccc
Q 006800 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQK 578 (630)
Q Consensus 528 ~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~-~~g~~~~l~~~~ 578 (630)
+++++|+|++++++||+||+||||..|.||+||++|.|+ +...+|.|++..
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 999999999999999999999999999999999999994 344567777765
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.85 E-value=4.1e-09 Score=117.37 Aligned_cols=145 Identities=20% Similarity=0.235 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHcCCCEEEEeCCCChHH--HHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006800 249 TSIQCQALPIILSGRDIIGIAKTGSGKT--AAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 249 ~~~Q~~~i~~il~g~d~l~~a~TGsGKT--~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
++.|+.+++.++.++.+++.|++|+||| +.++++++..+. ...+.++++++||..+|.++.+.+.......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~------~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA------DGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC------SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh------hcCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999999 555566555431 12356899999999999999988887766554
Q ss_pred ceEEEEECCCChHHHHHHHHcCCc-EEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCc
Q 006800 327 IRVSAVYGGMSKLDQFKELKAGCE-IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~d-Iiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q 405 (630)
+...... +... .. ...+ ++-.+|+.. . +.........+++||||||+ |++ ...+..++..++...|
T Consensus 225 l~~~~~~-~~~~--~~----~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 225 LTDEQKK-RIPE--DA----STLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHAR 291 (608)
T ss_dssp CCSCCCC-SCSC--CC----BTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCE
T ss_pred CCHHHHh-ccch--hh----hhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCE
Confidence 3211110 0000 00 0011 111222211 1 11111222378999999999 454 5677888999988899
Q ss_pred EEEEeec
Q 006800 406 TLLFSAT 412 (630)
Q Consensus 406 ~l~~SAT 412 (630)
+|++.-.
T Consensus 292 liLvGD~ 298 (608)
T 1w36_D 292 VIFLGDR 298 (608)
T ss_dssp EEEEECT
T ss_pred EEEEcch
Confidence 9988644
No 95
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.22 E-value=4.1e-06 Score=83.92 Aligned_cols=124 Identities=10% Similarity=0.093 Sum_probs=89.7
Q ss_pred ccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q 006800 453 DAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (630)
Q Consensus 453 ~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~ 531 (630)
.+.|+..|-.+|.... .+.+||||++.....+.+..+|...++.+..+.|.....++ + -.+....+.+.|..++
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEEEEECCCC
Confidence 4578877766665543 34599999999999999999999999999999998554321 1 1245566666677666
Q ss_pred cCCC-----CCCccEEEEeCCCCCHHHH-HHHhhhcccCC---CCCeEEEEEeccccHH
Q 006800 532 RGLD-----IKSIKSVVNFDIARDMDMH-VHRIGRTGRAG---DKDGTAYTLVTQKEAR 581 (630)
Q Consensus 532 ~Gld-----i~~v~~VI~~~~p~~~~~y-~QriGR~gR~g---~~~g~~~~l~~~~d~~ 581 (630)
-|+| +..+++||.||..||+..- +|.+-|++|.| .+...+|.|++..-.+
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 6775 7889999999999999985 99999999984 2456788888876543
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.22 E-value=1.3e-05 Score=89.56 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=56.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006800 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 245 ~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
+..+++.|..|+..++...-+++.||+|+|||.+ +..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~-~~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH-HHHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH-HHHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999999888899999999999975 44555555432 3567999999999999988777654
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.20 E-value=3e-06 Score=95.16 Aligned_cols=68 Identities=24% Similarity=0.296 Sum_probs=55.0
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006800 246 EKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d-~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
..|++-|.+|+..+++.++ .|+.||+|+|||.+ +..++.+++.. +.++|+++||...+.++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t-i~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT-VVEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-HHHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 4689999999999987765 68999999999976 45566666543 667999999999999988777554
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=1.8e-05 Score=90.50 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=56.0
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006800 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 245 ~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
+..+++.|.+|+..++.+.-+++.||.|+|||.+ +..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~-i~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT-SATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH-HHHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH-HHHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4578999999999999887889999999999975 34444554331 2567999999999999998887765
No 99
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.05 E-value=1.8e-05 Score=87.09 Aligned_cols=126 Identities=21% Similarity=0.230 Sum_probs=80.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006800 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
..+++.|.+++..++.++.+++.|+.|+|||.+ +..++..+.. .+.++++++||...+..+.+.+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~------- 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES-------LGLEVGLCAPTGKAARRLGEVT------- 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHH-------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhh-------
Confidence 468999999999999999999999999999964 3333333322 2567999999998887665432
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCc
Q 006800 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (630)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q 405 (630)
+.....+ ..+.. ... + .+.........+++||||||+.+. ...+..++..++...+
T Consensus 253 ~~~a~Ti----------h~ll~---~~~-~------~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~ 308 (574)
T 3e1s_A 253 GRTASTV----------HRLLG---YGP-Q------GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGAR 308 (574)
T ss_dssp TSCEEEH----------HHHTT---EET-T------EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCE
T ss_pred cccHHHH----------HHHHc---CCc-c------hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCE
Confidence 2111111 00100 000 0 001111223467899999999754 4467777888877777
Q ss_pred EEEEe
Q 006800 406 TLLFS 410 (630)
Q Consensus 406 ~l~~S 410 (630)
++++.
T Consensus 309 lilvG 313 (574)
T 3e1s_A 309 VLLVG 313 (574)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77653
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.04 E-value=2.8e-05 Score=88.80 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006800 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 245 ~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
...+++.|.+|+..++.+.-+++.||+|+|||.+ +..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4578999999999999888899999999999975 44555565542 2567999999999999887776654
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.99 E-value=2.1e-05 Score=84.56 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=50.1
Q ss_pred cCCCCCcHHHHHHHHHHHcC-----CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHH
Q 006800 243 QGYEKPTSIQCQALPIILSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (630)
Q Consensus 243 ~~~~~~~~~Q~~~i~~il~g-----~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 317 (630)
..|..|++-|.+++..++.. ..+++.|+.|||||.+ +..++.++.... ...+++++||...+..+...
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG------ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT------CCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC------CceEEEecCcHHHHHHHHhh
Confidence 35688999999999877533 4899999999999964 445555554431 23689999999888665443
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.91 E-value=0.00019 Score=80.52 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006800 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
..+++-|.+++. .....+++.|+.|||||.+ ++.-+.+++.... ....++|+|++|+..+.++.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~-l~~ri~~l~~~~~---~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRV-LVHRIAWLMSVEN---CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHH-HHHHHHHHHHTSC---CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHH-HHHHHHHHHHhCC---CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 578999999997 3467899999999999976 4444555544321 1124699999999999999999887753
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.36 E-value=0.0015 Score=67.61 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=86.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006800 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|+|+|...+..+...+-+++..+-+.|||.+....++..++.. .+..+++++||+..|..+.+.+..+.....
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 68999999998776567789999999999987666555544432 256799999999999988888887765432
Q ss_pred --ceEEEEECCCChHHHHHHHHcCCcEEEeC--hHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcC-
Q 006800 327 --IRVSAVYGGMSKLDQFKELKAGCEIVIAT--PGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR- 401 (630)
Q Consensus 327 --~~~~~~~gg~~~~~~~~~l~~~~dIiv~T--p~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~- 401 (630)
++.......... ..+..|+.|.+.+ |..+ .-.++.++|+||+|.+-+ +...+..+...+.
T Consensus 237 ~ll~~~~~~~~~~~----I~f~nGs~i~~lsa~~~sl---------rG~~~~~viiDE~a~~~~--~~el~~al~~~ls~ 301 (385)
T 2o0j_A 237 DFLQPGIVEWNKGS----IELDNGSSIGAYASSPDAV---------RGNSFAMIYIEDCAFIPN--FHDSWLAIQPVISS 301 (385)
T ss_dssp TTTSCCEEEECSSE----EEETTSCEEEEEECSHHHH---------HTSCCSEEEEESGGGSTT--HHHHHHHHHHHHHS
T ss_pred HhhhhhhccCCccE----EEeCCCCEEEEEECCCCCc---------cCCCCCEEEechhhhcCC--CHHHHHHHHHHhhc
Confidence 111000000000 0112345544433 3222 123568899999998653 1233333333332
Q ss_pred -CCCcEEEEe
Q 006800 402 -PDRQTLLFS 410 (630)
Q Consensus 402 -~~~q~l~~S 410 (630)
++.+++++|
T Consensus 302 ~~~~kiiiiS 311 (385)
T 2o0j_A 302 GRRSKIIITT 311 (385)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCcEEEEe
Confidence 345555554
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.07 E-value=0.004 Score=68.88 Aligned_cols=146 Identities=14% Similarity=0.103 Sum_probs=88.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006800 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|+|+|...+..+...+-+++..+-|+|||.+....++..++..+ +..+++++||+..|..+...++.+.....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~------~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK------DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS------SCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC------CCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 689999999987766788999999999999776655555554332 56799999999999999888888766443
Q ss_pred --ceEEEEECCCChHHHHHHHHcCCcEEEe--ChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcC-
Q 006800 327 --IRVSAVYGGMSKLDQFKELKAGCEIVIA--TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR- 401 (630)
Q Consensus 327 --~~~~~~~gg~~~~~~~~~l~~~~dIiv~--Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~- 401 (630)
+........... ..+.+|+.|.+. +|..+.- .+..++|+||+|.+-+. ...+..+...+.
T Consensus 237 ~~~~~~~~~~~~~~----i~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~ 301 (592)
T 3cpe_A 237 DFLQPGIVEWNKGS----IELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLAIQPVISS 301 (592)
T ss_dssp TTTSCCEEEECSSE----EEETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTH--HHHHHHHHHHHSS
T ss_pred HhhccccccCCccE----EEecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCch--hHHHHHHHHHhcc
Confidence 111000000000 011234544443 2433321 14678999999986431 233344444443
Q ss_pred -CCCcEEEEeeccc
Q 006800 402 -PDRQTLLFSATMP 414 (630)
Q Consensus 402 -~~~q~l~~SAT~~ 414 (630)
++.+++++| |+.
T Consensus 302 ~~~~~ii~is-TP~ 314 (592)
T 3cpe_A 302 GRRSKIIITT-TPN 314 (592)
T ss_dssp SSCCEEEEEE-CCC
T ss_pred CCCceEEEEe-CCC
Confidence 345555444 443
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.52 E-value=0.0054 Score=56.31 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHH---------cCCCEEEEeCCCChHHHH
Q 006800 249 TSIQCQALPIIL---------SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 249 ~~~Q~~~i~~il---------~g~d~l~~a~TGsGKT~~ 278 (630)
.+.|..++..+. .|+.+++.||+|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 456666665543 468899999999999954
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.48 E-value=0.015 Score=53.61 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=26.3
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr 308 (630)
.|+-.++.|++|+|||...+ -++..+.. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll-~~~~~~~~-------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELL-SFVEIYKL-------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHH-HHHHHHHH-------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHH-HHHHHHHH-------CCCeEEEEeecc
Confidence 35567899999999997643 33333322 255688888873
No 107
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.46 E-value=0.015 Score=65.94 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=71.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006800 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
..|+|-|.+++.. ....+++.|..|||||.+ +..-+.+++.... -....+|+|+.|+..|.++.+.+.++....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~v-L~~ri~~ll~~~~---~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRV-LTHRIAYLMAEKH---VAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHH-HHHHHHHHHHTTC---CCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHH-HHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 5689999999875 457899999999999986 4444455544211 123469999999999999998888775321
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHH-Hcccccc-CceeEEEecchhh
Q 006800 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML-KMKALTM-SRVTYLVLDEADR 383 (630)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l-~~~~~~l-~~i~~lVvDEah~ 383 (630)
...+-|+|..++...+ ......+ -.-.+-|+|+.+.
T Consensus 84 ----------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 84 ----------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp ----------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred ----------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 0235778877775433 3222111 0123567777663
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.24 E-value=0.013 Score=54.52 Aligned_cols=39 Identities=15% Similarity=0.068 Sum_probs=26.6
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccH
Q 006800 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr 308 (630)
|+=.++.+++|+|||.+.+ -++.... ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~-------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAK-------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHH-------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHH-------HCCCEEEEEEecc
Confidence 4557899999999997644 3333332 2367799998873
No 109
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.11 E-value=0.012 Score=61.79 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=60.4
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH
Q 006800 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 343 (630)
=.++.|+.|+|||... ..++.. ...+|++||++++..|.+.+.+. +..
T Consensus 163 v~~I~G~aGsGKTt~I-----~~~~~~--------~~~lVlTpT~~aa~~l~~kl~~~----~~~--------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI-----LSRVNF--------EEDLILVPGRQAAEMIRRRANAS----GII--------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHH-----HHHCCT--------TTCEEEESCHHHHHHHHHHHTTT----SCC---------------
T ss_pred EEEEEcCCCCCHHHHH-----HHHhcc--------CCeEEEeCCHHHHHHHHHHhhhc----Ccc---------------
Confidence 4589999999999752 222221 23699999999998887665332 110
Q ss_pred HHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006800 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 344 ~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
.....-|.|.++++. ..........++||||||-. ...+ .+..++..+++ .+++++.
T Consensus 211 ---~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm-~~~~---~l~~l~~~~~~-~~vilvG 267 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLM-LHTG---CVNFLVEMSLC-DIAYVYG 267 (446)
T ss_dssp ---CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGG-SCHH---HHHHHHHHTTC-SEEEEEE
T ss_pred ---ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCccc-CCHH---HHHHHHHhCCC-CEEEEec
Confidence 012234667666543 11111122488999999984 4332 34444444444 4555543
No 110
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.83 E-value=0.01 Score=66.79 Aligned_cols=71 Identities=18% Similarity=0.101 Sum_probs=52.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006800 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
.|+|-|.+++.. .+..+++.|..|||||.+. +.-+.+++... .....++|+|+.|+..|.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l-~~ri~~ll~~~---~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVI-TNKIAHLIRGC---GYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHH-HHHHHHHHHHH---CCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHH-HHHHHHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999975 3678999999999999763 33334443321 01234699999999999999988887753
No 111
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.83 E-value=0.0086 Score=56.35 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=26.5
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccH
Q 006800 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr 308 (630)
|+=.++.+++|+|||...+-.+.+.. ..+.+++|+.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~--------~~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ--------FAKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH--------HTTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH--------HCCCEEEEEEecc
Confidence 34457899999999986444444443 2367799999865
No 112
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.75 E-value=0.0032 Score=56.11 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=16.0
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|+.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999953
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.071 Score=53.58 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=18.8
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
.+.++++.||+|+|||.+ +-.++..+
T Consensus 44 ~~~~lli~GpPGTGKT~~-v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQL-VNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHH-HHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHH
Confidence 346899999999999975 33444444
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.68 E-value=0.05 Score=54.97 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.8
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999964
No 115
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.63 E-value=0.014 Score=55.62 Aligned_cols=92 Identities=10% Similarity=0.117 Sum_probs=51.0
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.-+++.|++|+|||.+. +-++..+.. .+.+++++.|...- . ....++...|+..
T Consensus 11 ~G~i~litG~mGsGKTT~l-l~~~~r~~~-------~g~kVli~~~~~d~--r---~~~~i~srlG~~~----------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAEL-IRRLHRLEY-------ADVKYLVFKPKIDT--R---SIRNIQSRTGTSL----------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHH-HHHHHHHHH-------TTCCEEEEEECCCG--G---GCSSCCCCCCCSS-----------
T ss_pred CcEEEEEECCCCCcHHHHH-HHHHHHHHh-------cCCEEEEEEeccCc--h---HHHHHHHhcCCCc-----------
Confidence 4556788999999999763 444444322 25678888774310 0 0001111112111
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh
Q 006800 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
..+-+.+...+...+.... .-..+++|||||++.+.
T Consensus 67 --------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 --------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp --------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred --------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 1233566666666655322 12458999999999743
No 116
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.56 E-value=0.14 Score=50.06 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=14.2
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
..+++.||+|+|||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 5799999999999964
No 117
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.47 E-value=0.034 Score=61.34 Aligned_cols=113 Identities=23% Similarity=0.359 Sum_probs=74.9
Q ss_pred CCcHHHHHHHHHHHc--CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhh
Q 006800 247 KPTSIQCQALPIILS--GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~--g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 324 (630)
.+|.-|.+++..++. ..-.++.|+-|.|||.+ +-.++..+. ..++|.+|+.+-+..+ .++...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~-lG~~~a~~~----------~~~~vtAP~~~a~~~l----~~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSAL-AGQLISRIA----------GRAIVTAPAKASTDVL----AQFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHH-HHHHHHHSS----------SCEEEECSSCCSCHHH----HHHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHH-HHHHHHHHH----------hCcEEECCCHHHHHHH----HHHhhC
Confidence 689999999998886 33579999999999954 222333331 1269999998776533 233221
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCC
Q 006800 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (630)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~ 404 (630)
.|-+..|..+.. .+...++||||||=.+- .+.+..++..+
T Consensus 240 -------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~---- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF---- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----
T ss_pred -------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC----
Confidence 144456655332 23468999999998865 66777777643
Q ss_pred cEEEEeeccc
Q 006800 405 QTLLFSATMP 414 (630)
Q Consensus 405 q~l~~SAT~~ 414 (630)
..++||.|..
T Consensus 280 ~~v~~~tTv~ 289 (671)
T 2zpa_A 280 PRTLLTTTVQ 289 (671)
T ss_dssp SEEEEEEEBS
T ss_pred CeEEEEecCC
Confidence 2477888863
No 118
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.27 E-value=0.055 Score=56.81 Aligned_cols=132 Identities=17% Similarity=0.220 Sum_probs=72.9
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEc-c-cHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006800 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA-P-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~-P-tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
+-+++++++|+|||.+.. .|...+.. .+.+++++. . .|.-+. +.+..+....++.+.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~--kLA~~l~~------~G~kVllv~~D~~r~~a~---eqL~~~~~~~gv~~~~~~~~~---- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG--KLAYFYKK------RGYKVGLVAADVYRPAAY---DQLLQLGNQIGVQVYGEPNNQ---- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHH--HHHHHHHH------TTCCEEEEEECCSCHHHH---HHHHHHHHTTTCCEECCTTCS----
T ss_pred eEEEEECCCCCCHHHHHH--HHHHHHHH------cCCeEEEEecCccchhHH---HHHHHHHHhcCCceeeccccC----
Confidence 457888999999996532 22232221 244565554 3 333332 334444444455433221111
Q ss_pred HHHHHHcCCcEEEeChHHHH-HHHHccccccCceeEEEecchhhhh---cCCcHHHHHHHHhhcCCCCcEEEEeecccHH
Q 006800 341 QFKELKAGCEIVIATPGRLI-DMLKMKALTMSRVTYLVLDEADRMF---DLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (630)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~-~~l~~~~~~l~~i~~lVvDEah~~~---~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~ 416 (630)
.|..+. ..+. ......++++|||.+-++. +..+...+..+...+.+..-+++++|+....
T Consensus 163 --------------dp~~i~~~al~--~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 163 --------------NPIEIAKKGVD--IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK 226 (433)
T ss_dssp --------------CHHHHHHHHHH--HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG
T ss_pred --------------CHHHHHHHHHH--HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH
Confidence 122221 1121 1123478899999998643 2335566777777778887788889987665
Q ss_pred HHHHHHHHc
Q 006800 417 VEKLAREIL 425 (630)
Q Consensus 417 ~~~l~~~~~ 425 (630)
....+..|.
T Consensus 227 a~~~a~~f~ 235 (433)
T 3kl4_A 227 AYDLASRFH 235 (433)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555543
No 119
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.10 E-value=0.087 Score=48.98 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=14.5
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
+.+++.||+|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999964
No 120
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.04 E-value=0.024 Score=53.89 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=28.2
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr 308 (630)
.|+=.++.|++|+|||...+-.+.++. ..+.+++++-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~--------~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ--------IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH--------TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH--------HCCCeEEEEeecC
Confidence 466678999999999976444444443 2367789988854
No 121
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.02 E-value=0.16 Score=45.90 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=14.8
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
.+.+++.||+|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999964
No 122
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.93 E-value=0.047 Score=65.58 Aligned_cols=73 Identities=26% Similarity=0.209 Sum_probs=54.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006800 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
.++|+-|.++|.. .++++++.|..|||||.+.+--++..+..... .....++|+|++|+..|..+.+.+....
T Consensus 9 ~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 4689999999975 38899999999999998755445555543210 1123469999999999999998887754
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.90 E-value=0.06 Score=55.50 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=15.3
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.++.+++.||+|+|||..
T Consensus 43 ~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCCEEECBCTTSSHHHH
T ss_pred CCCcEEEECCCCCCHHHH
Confidence 346899999999999964
No 124
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.63 E-value=0.13 Score=54.48 Aligned_cols=43 Identities=16% Similarity=0.397 Sum_probs=24.8
Q ss_pred ceeEEEecchhhhhcC-CcHHHHHHHHhhc-CCCCcEEEEeeccc
Q 006800 372 RVTYLVLDEADRMFDL-GFEPQIRSIVGQI-RPDRQTLLFSATMP 414 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~-~~~~~v~~i~~~l-~~~~q~l~~SAT~~ 414 (630)
...+|+|||+|.+... .....+..+++.+ ....++|+.|...+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 5679999999997753 2233344444443 34455555444333
No 125
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.58 E-value=0.051 Score=51.00 Aligned_cols=99 Identities=14% Similarity=0.114 Sum_probs=50.8
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.=.++.+++|+|||... +-.+..... .+.+++|+.|...--. .-.......|+...
T Consensus 27 ~G~I~vitG~M~sGKTT~L-lr~~~r~~~-------~g~kvli~kp~~D~R~----~~~~I~Sr~G~~~~---------- 84 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEEL-IRRLRRGIY-------AKQKVVVFKPAIDDRY----HKEKVVSHNGNAIE---------- 84 (219)
T ss_dssp CCEEEEEEECTTSCHHHHH-HHHHHHHHH-------TTCCEEEEEEC---------------CBTTBCCE----------
T ss_pred CceEEEEECCCCCCHHHHH-HHHHHHHHH-------cCCceEEEEeccCCcc----hhhhHHHhcCCcee----------
Confidence 4555789999999999753 333333322 2567899998643111 01122222233221
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHH
Q 006800 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (630)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~ 397 (630)
-+.|..+..+...+ ...+++|+||||+-+. .....++..+.
T Consensus 85 ---------a~~v~~~~di~~~i------~~~~dvV~IDEaQFf~-~~~v~~l~~la 125 (219)
T 3e2i_A 85 ---------AINISKASEIMTHD------LTNVDVIGIDEVQFFD-DEIVSIVEKLS 125 (219)
T ss_dssp ---------EEEESSGGGGGGSC------CTTCSEEEECCGGGSC-THHHHHHHHHH
T ss_pred ---------eEEeCCHHHHHHHH------hcCCCEEEEechhcCC-HHHHHHHHHHH
Confidence 13344433222211 2468899999999844 23344555554
No 126
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.49 E-value=0.079 Score=48.96 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=27.5
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEccc
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Pt 307 (630)
.|+=.++.+++|||||.- ++-++.+.... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHHT-------TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHHc-------CCeEEEEccc
Confidence 456679999999999964 45555444322 5668999886
No 127
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.44 E-value=0.29 Score=44.28 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=14.7
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
.+.+++.|++|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 36799999999999964
No 128
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.14 E-value=0.05 Score=53.69 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=30.2
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--HcCCCEEEEeCCCChHHHH
Q 006800 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQ-CQALPII--LSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~i--l~g~d~l~~a~TGsGKT~~ 278 (630)
|-.+|.++.-.....+.|...-. .+.+ .+.+..+ ...+.+++.||+|+|||..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 34568887666666665543210 0000 1111111 2457899999999999964
No 129
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.00 E-value=0.25 Score=51.80 Aligned_cols=131 Identities=17% Similarity=0.200 Sum_probs=64.5
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEc--ccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006800 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA--PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~--Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.-+++++++|+|||.+.. .+..++ .. .|.+++++. |.|.-+ ++.+..+....++.+.....+..
T Consensus 101 ~vIlivG~~G~GKTTt~~-kLA~~l-~~------~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~d--- 166 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVA-KLARYF-QK------RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEKD--- 166 (443)
T ss_dssp EEEEEECCTTSSHHHHHH-HHHHHH-HT------TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCCC---
T ss_pred eEEEEECcCCCCHHHHHH-HHHHHH-HH------CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCCC---
Confidence 357889999999997532 222333 22 245566555 444443 23455555555665543322222
Q ss_pred HHHHHHcCCcEEEeChHHHH-HHHHccccccCceeEEEecchhhhhc-CCcHHHHHHHHhhcCCCCcEEEEeecccHHHH
Q 006800 341 QFKELKAGCEIVIATPGRLI-DMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (630)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~-~~l~~~~~~l~~i~~lVvDEah~~~~-~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~ 418 (630)
|..+. ..+.. .....++++|||.+=++.. ......+..+.....++.-++++.|+......
T Consensus 167 ---------------p~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~ 229 (443)
T 3dm5_A 167 ---------------AIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY 229 (443)
T ss_dssp ---------------HHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH
T ss_pred ---------------HHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH
Confidence 21111 11110 0112366777777644221 11233344555555666666777777655444
Q ss_pred HHHHHH
Q 006800 419 KLAREI 424 (630)
Q Consensus 419 ~l~~~~ 424 (630)
..+..|
T Consensus 230 ~~a~~f 235 (443)
T 3dm5_A 230 NQALAF 235 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 130
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.86 E-value=0.59 Score=46.96 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=29.1
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH-----cCCCEEEEeCCCChHHHH
Q 006800 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL-----SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il-----~g~d~l~~a~TGsGKT~~ 278 (630)
|-.+|.++.-...+.+.|...-. .|. ..|.++ ..+.+++.||+|+|||..
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 34568888766666666543210 000 001111 135799999999999964
No 131
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.82 E-value=0.084 Score=59.87 Aligned_cols=97 Identities=12% Similarity=0.070 Sum_probs=72.5
Q ss_pred cCCccccHHHHHH-hccCCCCCCCEEEEccchhhHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEE
Q 006800 450 IPSDAEKLPWLLE-KLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524 (630)
Q Consensus 450 ~~~~~~k~~~l~~-~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VL 524 (630)
.+....|.....- .+.....+.+++|.+|+..-+...++.+.. .++.+..+||+++..+|...+..+.+|...|+
T Consensus 396 a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~Iv 475 (780)
T 1gm5_A 396 GDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVV 475 (780)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEE
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEE
Confidence 3445556443322 222222356899999999988877777654 37999999999999999999999999999999
Q ss_pred EEcC-CcccCCCCCCccEEEEeC
Q 006800 525 IATD-VAARGLDIKSIKSVVNFD 546 (630)
Q Consensus 525 vaT~-~~~~Gldi~~v~~VI~~~ 546 (630)
|+|. .+...+.+.++..||.=.
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEES
T ss_pred EECHHHHhhhhhccCCceEEecc
Confidence 9995 444678888888888643
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.82 E-value=0.27 Score=50.55 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=21.6
Q ss_pred EEEecchhhhhcCCcHHH-HHHHHhhcCCCCcEEEEee
Q 006800 375 YLVLDEADRMFDLGFEPQ-IRSIVGQIRPDRQTLLFSA 411 (630)
Q Consensus 375 ~lVvDEah~~~~~~~~~~-v~~i~~~l~~~~q~l~~SA 411 (630)
+|||||+|.+........ +..++... ....+|+.|.
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~ 172 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISN 172 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEEC
Confidence 899999999876532344 55555544 3344444433
No 133
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.73 E-value=0.18 Score=51.21 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHHH----cCC---CEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 248 PTSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 248 ~~~~Q~~~i~~il----~g~---d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
+.|+|..++..+. +|+ .+++.||.|+|||.. ...+...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~-a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDAL-IYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHH-HHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHH-HHHHHHHHh
Confidence 3567777765543 444 389999999999965 333444443
No 134
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.71 E-value=0.45 Score=44.18 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=23.9
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006800 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
....+|||||+|.+... ....+..++........+|+.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45678999999996532 2344555565554455454443
No 135
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.60 E-value=0.13 Score=52.92 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=13.7
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999964
No 136
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.47 E-value=0.69 Score=42.67 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=33.7
Q ss_pred CceeEEEecchhhhhcCCc--HHHHHHHHhhcCCCCcEEEEeecccHHHHHHHH
Q 006800 371 SRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~--~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~ 422 (630)
..+++||+||+-..+..++ .+.+..++..-+....+|+.+--+|+.+.+++.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCS
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCc
Confidence 5799999999987665553 345666666554455555555556666655543
No 137
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.47 E-value=0.15 Score=50.81 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=29.2
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHH-HHH-HH-HHcCCCEEEEeCCCChHHHH
Q 006800 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQC-QAL-PI-ILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~-~~i-~~-il~g~d~l~~a~TGsGKT~~ 278 (630)
|-.+|++++-...+.+.|...- . .|... +.+ .. +..++.+++.||+|+|||..
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v-~--~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELV-Q--YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-H--HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 3467888766666655554310 0 00000 000 00 12457899999999999964
No 138
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.46 E-value=0.091 Score=49.99 Aligned_cols=18 Identities=22% Similarity=0.117 Sum_probs=15.7
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.++.+++.||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467899999999999964
No 139
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.36 E-value=0.18 Score=50.59 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=15.2
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
++++++.||+|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57999999999999954
No 140
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.35 E-value=0.1 Score=52.50 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=24.5
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006800 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
....+|||||+|.+........+..++.......++|+.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999999762222344555555554455555533
No 141
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.12 E-value=0.36 Score=50.59 Aligned_cols=55 Identities=15% Similarity=0.303 Sum_probs=34.8
Q ss_pred CCCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHH
Q 006800 221 PRPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~ 278 (630)
..|-.+|++.+-.....+.|... .+..|.-++...++ --+.+|+.||+|+|||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 45678999998777777766532 11122222222111 237899999999999964
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.67 E-value=0.33 Score=49.73 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=15.0
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
++.+++.||+|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56899999999999964
No 143
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.35 E-value=0.16 Score=50.59 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=14.2
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.++++.||+|+|||.+
T Consensus 68 ~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4799999999999965
No 144
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.31 E-value=0.36 Score=49.07 Aligned_cols=43 Identities=12% Similarity=0.300 Sum_probs=27.0
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecc
Q 006800 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~ 413 (630)
.....++|+||+|. ++......+..++........+|+.|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999999 44434556666666665555555555443
No 145
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.01 E-value=0.55 Score=48.56 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=31.4
Q ss_pred CCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHH
Q 006800 223 PVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~ 278 (630)
|-.+|++.+=-....+.|... .+..|.-++.-.+ ---+.+|+.||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 457899997666666665432 1111111111111 1237899999999999964
No 146
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.93 E-value=2.2 Score=39.86 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.4
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
.+++.||+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999964
No 147
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.54 E-value=0.54 Score=47.45 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=14.4
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
..+++.||+|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5899999999999964
No 148
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.34 E-value=0.64 Score=49.06 Aligned_cols=115 Identities=23% Similarity=0.134 Sum_probs=55.3
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.-+++.|++|+|||. +++.+..++... .+..++++..- .-..|+...+..... ++....+..|.-...
T Consensus 199 ~G~l~ii~G~pg~GKT~-lal~ia~~~a~~------~g~~vl~~slE-~~~~~l~~R~~~~~~--~i~~~~l~~g~l~~~ 268 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTA-FALTIAQNAALK------EGVGVGIYSLE-MPAAQLTLRMMCSEA--RIDMNRVRLGQLTDR 268 (444)
T ss_dssp TTCEEEEEECTTSCHHH-HHHHHHHHHHHT------TCCCEEEEESS-SCHHHHHHHHHHHHT--TCCTTTCCGGGCCHH
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHHh------CCCeEEEEECC-CCHHHHHHHHHHHHc--CCCHHHHhCCCCCHH
Confidence 34568999999999996 445554444321 14447776542 112233333322111 221111111211222
Q ss_pred HHHHHH------cCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhhc
Q 006800 341 QFKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (630)
Q Consensus 341 ~~~~l~------~~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~ 386 (630)
.+..+. ....+.+. |+..+...+.+-.. -..+++||||..+.|..
T Consensus 269 ~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 269 DFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCC
Confidence 222221 23455553 34455443332111 12588999999999864
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.10 E-value=1.4 Score=41.69 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=28.9
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 319 (630)
.|.-+++.|++|+|||.. ++.++..+... +..++++.-. ....++...+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl-~~~~~~~~~~~-------~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIF-SQQFLWNGLKM-------GEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHH-HHHHHHHHHHT-------TCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHhc-------CCeEEEEEcc-CCHHHHHHHHH
Confidence 456789999999999974 34344443321 3446766532 22344444443
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.00 E-value=0.87 Score=48.17 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=54.5
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.-+++.|++|+|||.. ++.+..++... .+..++|+..-- -..|+...+... ..++....+..|.-...
T Consensus 202 ~G~liiI~G~pG~GKTtl-~l~ia~~~~~~------~g~~Vl~~s~E~-s~~~l~~r~~~~--~~~~~~~~l~~g~l~~~ 271 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAF-ALNIAQNVATK------TNENVAIFSLEM-SAQQLVMRMLCA--EGNINAQNLRTGKLTPE 271 (454)
T ss_dssp TTCEEEEECCTTSCHHHH-HHHHHHHHHHH------SSCCEEEEESSS-CHHHHHHHHHHH--HHTCCHHHHHTSCCCHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHHHHh------CCCcEEEEECCC-CHHHHHHHHHHH--HcCCCHHHHhcCCCCHH
Confidence 456789999999999964 44444444321 143477765321 112333332111 01111100011111122
Q ss_pred HHHHH------HcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhhc
Q 006800 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (630)
Q Consensus 341 ~~~~l------~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~ 386 (630)
.+..+ ....++.+. |++.+...+..-. .-..+++||||+.+.|..
T Consensus 272 ~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~-~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 272 DWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLK-QESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHH-TTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEccHHHhcc
Confidence 22221 123456553 4455544433211 113689999999999874
No 151
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.84 E-value=0.41 Score=49.81 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=64.8
Q ss_pred CCCCEEEEccchhhHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Ccc---cCCCCCCccE
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA---RGLDIKSIKS 541 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~---~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~~---~Gldi~~v~~ 541 (630)
...++||.+|++.-+..+++.+.. .++.+..+||+.+..++...+..+..|...|+|+|. .+. .-++...+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 467899999999999999999988 588999999999999999999999999999999994 331 1255667888
Q ss_pred EEEeC
Q 006800 542 VVNFD 546 (630)
Q Consensus 542 VI~~~ 546 (630)
||.=.
T Consensus 143 iViDE 147 (414)
T 3oiy_A 143 VFVDD 147 (414)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 87633
No 152
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.54 E-value=1 Score=44.83 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=23.6
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006800 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
....++||||+|.+... ....+..++........+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45789999999997532 2334555555544445444443
No 153
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.24 E-value=1.5 Score=40.79 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=55.1
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Cc-----ccCCCCCC
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARGLDIKS 538 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~-----~~Gldi~~ 538 (630)
..++||.||++.-+..+++.+... ++.+..++|+.+...... .+..+...|+|+|. .+ ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999888887764 788999999988765543 34556789999994 22 23467788
Q ss_pred ccEEEEe
Q 006800 539 IKSVVNF 545 (630)
Q Consensus 539 v~~VI~~ 545 (630)
+++||.=
T Consensus 159 ~~~lViD 165 (220)
T 1t6n_A 159 IKHFILD 165 (220)
T ss_dssp CCEEEEE
T ss_pred CCEEEEc
Confidence 8888863
No 154
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.10 E-value=2.4 Score=38.84 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=51.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHH-cCCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
++++||.|+++..+..+...+... ++.+..++|+.+..+... .+. +...|+||| +.+.. .+.+..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCcccC
Confidence 457999999999999888777665 889999999877654332 233 357899999 33333 4457778
Q ss_pred eEEEe
Q 006800 374 TYLVL 378 (630)
Q Consensus 374 ~~lVv 378 (630)
.+||.
T Consensus 124 ~~VI~ 128 (191)
T 2p6n_A 124 QHVIN 128 (191)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87776
No 155
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.02 E-value=1.5 Score=42.10 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.7
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
.+.+++.||+|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999964
No 156
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.92 E-value=0.5 Score=47.81 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=24.1
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006800 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
....+|++||+|.+... ....+..++........+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35679999999997532 2344555566555555555544
No 157
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.91 E-value=0.34 Score=51.19 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=14.0
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
..+++.||+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 3699999999999964
No 158
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.91 E-value=0.78 Score=46.79 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.4
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
+.+++.||+|+|||..
T Consensus 85 ~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCEEEECSTTSCHHHH
T ss_pred ceEEEECCCCCcHHHH
Confidence 5799999999999964
No 159
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.80 E-value=0.83 Score=48.80 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=27.4
Q ss_pred eeEEEecchhhhhcCC----------cHHHHHHHHhhcCCCCcEEEEeecccH
Q 006800 373 VTYLVLDEADRMFDLG----------FEPQIRSIVGQIRPDRQTLLFSATMPR 415 (630)
Q Consensus 373 i~~lVvDEah~~~~~~----------~~~~v~~i~~~l~~~~q~l~~SAT~~~ 415 (630)
..+|+|||+|.+.... ....+..++..+.....++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 4689999999986421 123344445555556667777787654
No 160
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.72 E-value=1 Score=46.54 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=15.1
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
.+.+|+.||+|+|||.+
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 47899999999999964
No 161
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.72 E-value=1.8 Score=43.37 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHH----HHHc-----CCCEEEEeCCCChHHHH
Q 006800 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALP----IILS-----GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~----~il~-----g~d~l~~a~TGsGKT~~ 278 (630)
|-.+|++++-...+.+.|... -.+| .++. .+.+++.||+|+|||..
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~----------v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEA----------VILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH----------HHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHH----------HHHHHhCHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 345788887666665555421 1111 1222 26799999999999964
No 162
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.47 E-value=1.2 Score=46.51 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=30.8
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHH
Q 006800 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~ 278 (630)
.|-.+|++.+--..+.+.|... .+..|--++...+ ---+.+|+.||+|+|||+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHH
Confidence 4557899987666665555431 0111111111111 1236899999999999964
No 163
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.23 E-value=1 Score=53.48 Aligned_cols=99 Identities=10% Similarity=0.111 Sum_probs=74.2
Q ss_pred EEEEcCCccccHHHHH-HhccCCCCCCCEEEEccchhhHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHhhcCC
Q 006800 446 VVHVIPSDAEKLPWLL-EKLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGV 520 (630)
Q Consensus 446 ~~~~~~~~~~k~~~l~-~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~F~~g~ 520 (630)
.+...+....|....+ ..+.....+.+++|.||+..-+...++.+.+ .++.+..+++..+..++..++..+..|.
T Consensus 627 ~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~ 706 (1151)
T 2eyq_A 627 RLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 706 (1151)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 3444555566654322 2222122456899999999988888877764 3678999999999999999999999999
Q ss_pred ceEEEEc-CCcccCCCCCCccEEEE
Q 006800 521 YHVLIAT-DVAARGLDIKSIKSVVN 544 (630)
Q Consensus 521 ~~VLvaT-~~~~~Gldi~~v~~VI~ 544 (630)
..|+|+| ..+...+.+.++.+||.
T Consensus 707 ~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 707 IDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCEEEECHHHHhCCccccccceEEE
Confidence 9999999 45556788888888875
No 164
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.04 E-value=0.56 Score=47.45 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=54.6
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.-+++.|++|+|||.. ++-+..++.. .+..++|+..- .-..|+...+..... ++....+..|.-...
T Consensus 45 ~G~LiiIaG~pG~GKTt~-al~ia~~~a~-------~g~~Vl~fSlE-ms~~ql~~Rlls~~~--~v~~~~l~~g~Ls~~ 113 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSL-MMNMVLSALN-------DDRGVAVFSLE-MSAEQLALRALSDLT--SINMHDLESGRLDDD 113 (338)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHHH-------TTCEEEEEESS-SCHHHHHHHHHHHHH--CCCHHHHHHTCCCHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEeCC-CCHHHHHHHHHHHhh--CCCHHHHhcCCCCHH
Confidence 445689999999999964 4544444433 25567777542 223344333322211 111100111111222
Q ss_pred HHHHHH------cCCcEEE-eC----hHHHHHHHHccccccCceeEEEecchhhhh
Q 006800 341 QFKELK------AGCEIVI-AT----PGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 341 ~~~~l~------~~~dIiv-~T----p~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
.+..+. ....|.| .+ +..|...+.+-......+.+||||-.+.|.
T Consensus 114 e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~ 169 (338)
T 4a1f_A 114 QWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMS 169 (338)
T ss_dssp HHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhc
Confidence 222221 1244555 33 344444433211111168999999999865
No 165
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=88.32 E-value=1.2 Score=47.40 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=39.0
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
.+....+.+-||||||++ +..+..-. +..+|||+|+...|.|++.+++.|..
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~~~~---------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIAERH---------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHHHHS---------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHH--HHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 456788999999999964 33332211 22379999999999999999999864
No 166
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.26 E-value=2.4 Score=42.75 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=24.3
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006800 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
....++|+||+|.|... ....+..+++.......+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 35789999999997532 2344555566555555555443
No 167
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.08 E-value=17 Score=36.13 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=30.6
Q ss_pred ChHHHHHHHHccccccCceeEEEecchhhhhc---CCcHHHHHHHHhhcCCCCcEEEEeecc
Q 006800 355 TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD---LGFEPQIRSIVGQIRPDRQTLLFSATM 413 (630)
Q Consensus 355 Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~---~~~~~~v~~i~~~l~~~~q~l~~SAT~ 413 (630)
+...+...+..... .--+|||||+|.+.. ..+...+..+..... .. .++++++.
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~i~~g~~ 179 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RI-KFIMSGSE 179 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TE-EEEEEESS
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-Ce-EEEEEcCc
Confidence 34445555543211 245799999999864 356667776666542 33 34455543
No 168
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.00 E-value=3.2 Score=42.03 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=14.7
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
++.+++.||+|+|||.+
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35799999999999964
No 169
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.97 E-value=1.5 Score=43.90 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=25.3
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P 306 (630)
.|.-+++.|++|+|||. +++.+..++..+ +..++++.-
T Consensus 67 ~G~l~li~G~pG~GKTt-l~l~ia~~~a~~-------g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTA-FALKQAKNMSDN-------DDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHH-HHHHHHHHHHTT-------TCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHHc-------CCeEEEEEC
Confidence 45678999999999996 445444444332 345777763
No 170
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=87.92 E-value=3 Score=39.20 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=60.4
Q ss_pred EcCCccccHHH-H---HHhccCCCCCCCEEEEccchhhHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHhhcC
Q 006800 449 VIPSDAEKLPW-L---LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSG 519 (630)
Q Consensus 449 ~~~~~~~k~~~-l---~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~r~~~~~~F~~g 519 (630)
..+....|... + +..+.......++||.+|++.-+..+++.+... ++.+..++|+.+...+...+ .
T Consensus 67 ~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~ 141 (230)
T 2oxc_A 67 QAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----K 141 (230)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----T
T ss_pred ECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----c
Confidence 33445566543 2 223322223468999999999999998888764 67899999999876654433 2
Q ss_pred CceEEEEcC-Cc-----ccCCCCCCccEEEE
Q 006800 520 VYHVLIATD-VA-----ARGLDIKSIKSVVN 544 (630)
Q Consensus 520 ~~~VLvaT~-~~-----~~Gldi~~v~~VI~ 544 (630)
...|+|+|. .+ ...+++..+++||.
T Consensus 142 ~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 142 KCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp SCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 578999994 22 13456677777775
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.87 E-value=1 Score=48.46 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=25.4
Q ss_pred CceeEEEecchhhhhcCC--cHHHHHHHHhhcCCCCcEEEEeecc
Q 006800 371 SRVTYLVLDEADRMFDLG--FEPQIRSIVGQIRPDRQTLLFSATM 413 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~--~~~~v~~i~~~l~~~~q~l~~SAT~ 413 (630)
....+|||||+|.|.... ....+..++.. ....+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 346789999999986432 23445555544 344567777664
No 172
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.79 E-value=2.4 Score=42.96 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.1
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
.+++.||.|+|||..
T Consensus 40 ~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI 54 (373)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 379999999999964
No 173
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=87.50 E-value=1.7 Score=44.77 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.3
Q ss_pred CCEEE--EeCCCChHHHH
Q 006800 263 RDIIG--IAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~--~a~TGsGKT~~ 278 (630)
+.+++ .|+.|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 45777 89999999964
No 174
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.34 E-value=3.1 Score=39.15 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.3
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-+++.+|+|+|||..
T Consensus 23 ~G~~~~i~G~~GsGKTtl 40 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQI 40 (243)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCcHHHH
Confidence 456789999999999965
No 175
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.19 E-value=3.5 Score=39.38 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=31.6
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il--~g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
.|-.+|+++.-.......+...-.. . -....+..+- -.+.+++.||+|+|||.. +-++...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl--~~~i~~~ 72 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL--ARAVAGE 72 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH--HHHHHHH
Confidence 3456788876666555444321100 0 0011222111 124599999999999954 4445444
No 176
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=87.12 E-value=3 Score=41.44 Aligned_cols=15 Identities=13% Similarity=-0.113 Sum_probs=13.4
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
..++.||.|+|||.+
T Consensus 20 ~~Lf~Gp~G~GKtt~ 34 (305)
T 2gno_A 20 SILINGEDLSYPREV 34 (305)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999965
No 177
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.07 E-value=2.3 Score=40.67 Aligned_cols=71 Identities=24% Similarity=0.334 Sum_probs=52.8
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Cc------ccCCCCCC
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA------ARGLDIKS 538 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~------~~Gldi~~ 538 (630)
..++||.+|++.-+..+++.+... ++.+..++|+.+.......+ .+...|+|+|. .+ ..++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999988888777654 78999999998876544332 24688999993 22 14567788
Q ss_pred ccEEEE
Q 006800 539 IKSVVN 544 (630)
Q Consensus 539 v~~VI~ 544 (630)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888775
No 178
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=86.82 E-value=2.4 Score=37.47 Aligned_cols=72 Identities=21% Similarity=0.350 Sum_probs=51.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHHc-CCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
+.++||.|+++..+..++..+... ++.+..++|+.+..+... .+.. ...|+|||. .+. ..+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA-RGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT-TTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCchhcC
Confidence 456999999999999888777665 889999999877554432 3333 478999993 222 34457778
Q ss_pred eEEEec
Q 006800 374 TYLVLD 379 (630)
Q Consensus 374 ~~lVvD 379 (630)
.+||.-
T Consensus 105 ~~Vi~~ 110 (163)
T 2hjv_A 105 SLVINY 110 (163)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 887763
No 179
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=86.81 E-value=2.3 Score=44.76 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.8
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
.+.+++.||+|+|||..
T Consensus 167 ~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 36899999999999964
No 180
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.52 E-value=1 Score=44.92 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.9
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
...+++.||+|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 36899999999999964
No 181
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.19 E-value=1.6 Score=43.33 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=22.6
Q ss_pred ceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006800 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
...+|||||+|.+.... ...+..++........+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 47899999999975322 233444555544445555544
No 182
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=85.32 E-value=4.1 Score=41.44 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=55.4
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Cc-----ccCCCCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARGLDIK 537 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~-----~~Gldi~ 537 (630)
...++||.||++.-+..+++.+... ++.+..++|+.+....... +..+...|+|+|. .+ ...+++.
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 3458999999999999988888764 7889999999987655433 4557789999993 22 2346677
Q ss_pred CccEEEE
Q 006800 538 SIKSVVN 544 (630)
Q Consensus 538 ~v~~VI~ 544 (630)
.+++||.
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 8888875
No 183
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.31 E-value=3.2 Score=41.66 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=34.6
Q ss_pred ceeEEEecchhhhh-cCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHc
Q 006800 372 RVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREIL 425 (630)
Q Consensus 372 ~i~~lVvDEah~~~-~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~ 425 (630)
..+++++|.+-++. .......+..+...+.++..++++.++....+...++.+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 35567788876532 2234455556666667788888888887766666665543
No 184
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=85.10 E-value=1.2 Score=52.71 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=71.8
Q ss_pred cCCccccHHHHHHh-ccCCCCCCCEEEEccchhhHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEE
Q 006800 450 IPSDAEKLPWLLEK-LPGMIDDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (630)
Q Consensus 450 ~~~~~~k~~~l~~~-l~~~~~~~~iLIF~~s~~~~~~l~~~L~~---~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLv 525 (630)
.+....|....+-. +.......++||.+|++.-+..++..|.. .++.+..+||+++..+|...+..+..|..+|||
T Consensus 100 ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV 179 (1104)
T 4ddu_A 100 APTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILV 179 (1104)
T ss_dssp CSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEE
T ss_pred eCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 33445555433222 22123456899999999999999999988 467999999999998888999999999999999
Q ss_pred EcC-Cccc---CCCCCCccEEEEeC
Q 006800 526 ATD-VAAR---GLDIKSIKSVVNFD 546 (630)
Q Consensus 526 aT~-~~~~---Gldi~~v~~VI~~~ 546 (630)
+|. .+.. -+++..+++||.=.
T Consensus 180 ~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 180 FSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp EEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred ECHHHHHHHHHhhcccCcCEEEEeC
Confidence 994 3321 25567888888633
No 185
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.92 E-value=2.4 Score=48.65 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.3
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.+++++||+|+|||..
T Consensus 192 ~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCEEEECTTSCHHHH
T ss_pred CceEEEcCCCCCHHHH
Confidence 5799999999999964
No 186
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=84.12 E-value=3.1 Score=36.81 Aligned_cols=72 Identities=19% Similarity=0.337 Sum_probs=50.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHHc-CCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
+.++||.|+++..+..++..+... ++.+..++|+.+..+... .+.. ...|+|||. .+. ..+.+..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA-RGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT-TTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh-cCCCcccC
Confidence 467999999999998887777664 788999999877554432 2333 478999993 222 34456777
Q ss_pred eEEEec
Q 006800 374 TYLVLD 379 (630)
Q Consensus 374 ~~lVvD 379 (630)
.+||.-
T Consensus 100 ~~Vi~~ 105 (165)
T 1fuk_A 100 SLVINY 105 (165)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 777763
No 187
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=84.10 E-value=1.1 Score=48.51 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=19.3
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
.|..+++.+|+|+|||.. +-++...+
T Consensus 107 ~g~~vll~Gp~GtGKTtl--ar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL--AKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhc
Confidence 477899999999999964 44444443
No 188
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=83.86 E-value=4.4 Score=36.23 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=51.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHHc-CCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
+.++||.|+++..|..++..+... ++.+..++|+.+..+... .+.. ...|+|||. .+ ...+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccC
Confidence 567999999999998887777654 888999999887654432 2333 478999993 22 234567788
Q ss_pred eEEEe
Q 006800 374 TYLVL 378 (630)
Q Consensus 374 ~~lVv 378 (630)
.+||.
T Consensus 104 ~~Vi~ 108 (175)
T 2rb4_A 104 TIVVN 108 (175)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88884
No 189
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=83.84 E-value=3.4 Score=38.40 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=51.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---HHc-CCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
+.++||.|+|+.-+..++..+.+. ++.+..++|+.+....... +.. ...|+|||. .+. ..+.+..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA-RGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT-CSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh-cCCCCccC
Confidence 456999999999998888777665 8899999999876554333 333 478999993 332 34457778
Q ss_pred eEEEe
Q 006800 374 TYLVL 378 (630)
Q Consensus 374 ~~lVv 378 (630)
.+||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87774
No 190
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.46 E-value=1.8 Score=46.72 Aligned_cols=59 Identities=19% Similarity=0.351 Sum_probs=55.0
Q ss_pred CCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~ 528 (630)
.+.+||.+|++.-+......|...++.+..+||+.+..++..+...+..|..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 57899999999999999999999999999999999999999999999999999999993
No 191
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.01 E-value=0.93 Score=39.33 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=17.4
Q ss_pred HHHcCCCEEEEeCCCChHHHH
Q 006800 258 IILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 258 ~il~g~d~l~~a~TGsGKT~~ 278 (630)
......++++.|++|+|||..
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 345678999999999999964
No 192
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=82.90 E-value=0.84 Score=43.51 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=27.8
Q ss_pred CceeEEEecchhhhhc-----CCcHHHHHHHHhhcCCCCcEEEEeeccc
Q 006800 371 SRVTYLVLDEADRMFD-----LGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~-----~~~~~~v~~i~~~l~~~~q~l~~SAT~~ 414 (630)
....++|+||.-.+++ ......+..++..++..-.+++++.-..
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~ 182 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4678999999998876 3344446666666643334555554443
No 193
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=82.77 E-value=3.8 Score=44.80 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=61.9
Q ss_pred EEcCCccccHHH-HHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHh--hcCCceEE
Q 006800 448 HVIPSDAEKLPW-LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF--KSGVYHVL 524 (630)
Q Consensus 448 ~~~~~~~~k~~~-l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F--~~g~~~VL 524 (630)
...+....|... ++-.+. ..+.+||.+|++.-+......|...|+.+..++|+++..++..++..+ ..+..+||
T Consensus 64 v~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Il 140 (591)
T 2v1x_A 64 LVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLI 140 (591)
T ss_dssp EECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEE
T ss_pred EEECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEE
Confidence 344455555432 333332 357899999999999999999999999999999999999998888888 57889999
Q ss_pred EEcC
Q 006800 525 IATD 528 (630)
Q Consensus 525 vaT~ 528 (630)
++|.
T Consensus 141 v~Tp 144 (591)
T 2v1x_A 141 YVTP 144 (591)
T ss_dssp EECH
T ss_pred EECh
Confidence 9995
No 194
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=82.71 E-value=13 Score=29.90 Aligned_cols=51 Identities=27% Similarity=0.459 Sum_probs=43.5
Q ss_pred EEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceE
Q 006800 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (630)
Q Consensus 473 iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~V 523 (630)
.+||.+...-...+...++..|..++.++++.+...|.+-++.|...-..|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 467888888888999999999999999999999999999999998654433
No 195
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=82.15 E-value=1.9 Score=40.81 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=17.5
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIV 285 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~ 285 (630)
.|.-+++.|++|+|||.. ++-++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l-~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTF-AAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHH-HHHHHH
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHH
Confidence 346789999999999963 444433
No 196
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.14 E-value=6.8 Score=35.70 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=51.3
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Cc----c-cCCCCCC
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----A-RGLDIKS 538 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~----~-~Gldi~~ 538 (630)
..++||.+|++.-+..+++.+... +..+..++|+.+....... + .+...|+|+|. .+ . ..+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999998888887653 6789999999886544322 2 34678999994 22 2 2356777
Q ss_pred ccEEEE
Q 006800 539 IKSVVN 544 (630)
Q Consensus 539 v~~VI~ 544 (630)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 197
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=82.01 E-value=1.1 Score=47.43 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=14.2
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
+.+++.||+|+|||+.
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999964
No 198
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=82.01 E-value=4.1 Score=38.48 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=46.1
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-----Ccc-cCCCCCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA-RGLDIKS 538 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-----~~~-~Gldi~~ 538 (630)
...++||.+|++.-+..+++.+... +..+..++|+.+... ....+..+...|+|+|. .+. ..+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3468999999999999888888764 577888888765433 23445567789999993 222 3366777
Q ss_pred ccEEEE
Q 006800 539 IKSVVN 544 (630)
Q Consensus 539 v~~VI~ 544 (630)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887775
No 199
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.94 E-value=5.4 Score=38.71 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.0
Q ss_pred HHcCCCEEEEeCCCChHHHH
Q 006800 259 ILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 259 il~g~d~l~~a~TGsGKT~~ 278 (630)
+..|.-+++.+++|+|||..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl 46 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSML 46 (279)
T ss_dssp EETTSEEEEEESTTSSHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHH
Confidence 44678899999999999964
No 200
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=81.84 E-value=4.6 Score=38.21 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=52.8
Q ss_pred CCCEEEEccchhhHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Cc----c-cCCCCCCc
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----A-RGLDIKSI 539 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~----~-~Gldi~~v 539 (630)
..++||.+|++.-+..+.+.+.. .++.+..++|+.+.......+. . ...|+|+|. .+ . ..+++..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999988888776654 4889999999998776654443 2 478999994 22 2 34678888
Q ss_pred cEEEE
Q 006800 540 KSVVN 544 (630)
Q Consensus 540 ~~VI~ 544 (630)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88875
No 201
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=81.48 E-value=1.1 Score=39.06 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=16.5
Q ss_pred HcCCCEEEEeCCCChHHHH
Q 006800 260 LSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~ 278 (630)
..+.++++.||+|+|||..
T Consensus 22 ~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TCCSCEEEESSTTSSHHHH
T ss_pred CCCCCEEEECCCCCCHHHH
Confidence 4667999999999999965
No 202
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=80.70 E-value=11 Score=37.14 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=27.8
Q ss_pred CceeEEEecchhhhh-cCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHH
Q 006800 371 SRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (630)
Q Consensus 371 ~~i~~lVvDEah~~~-~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~ 422 (630)
..+++||||+.-.+. +......+..+...+.+..-++.+.++...+....++
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~ 231 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR 231 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHH
Confidence 467899999984432 1112334444455555555555566664433333333
No 203
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=80.40 E-value=2.7 Score=38.24 Aligned_cols=71 Identities=17% Similarity=0.262 Sum_probs=43.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---HHHHH-cCCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
+.++||.|+++..|..+...+... ++.+..++|+.+..+. ...+. +...|+|||. .+. ..+.+..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh-cCCCcccC
Confidence 567999999999998887777664 8889999988764432 23333 3578999993 222 23356677
Q ss_pred eEEEe
Q 006800 374 TYLVL 378 (630)
Q Consensus 374 ~~lVv 378 (630)
.+||.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77775
No 204
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=80.22 E-value=4.6 Score=37.97 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=49.3
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Ccc----c--CCCCCC
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----R--GLDIKS 538 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~~----~--Gldi~~ 538 (630)
..++||.+|++.-+..+++.+... ++.+..++|+.+.......+ +...|+|+|. .+. + .+++..
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 457999999999999888888764 47899999988655443332 4678999994 221 2 366677
Q ss_pred ccEEEE
Q 006800 539 IKSVVN 544 (630)
Q Consensus 539 v~~VI~ 544 (630)
+++||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777775
No 205
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.08 E-value=2.3 Score=52.79 Aligned_cols=44 Identities=27% Similarity=0.270 Sum_probs=30.3
Q ss_pred HHHHHc------CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEccc
Q 006800 256 LPIILS------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (630)
Q Consensus 256 i~~il~------g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Pt 307 (630)
+..++. ++.+++.+|+|+|||..++. +...... +|.+++++..-
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~a-la~ea~~-------~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ-VIAAAQR-------EGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHH-HHHHHHT-------TTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHH-HHHHHHH-------cCCcEEEEEcc
Confidence 666665 68999999999999975433 3333322 36678888764
No 206
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.02 E-value=8.6 Score=39.40 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=52.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHH-cCCcEEEeChHHHHHHHHccccccCc
Q 006800 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELK-AGCEIVIATPGRLIDMLKMKALTMSR 372 (630)
Q Consensus 297 ~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~ 372 (630)
.+.++||.|+++..+..++..+.+. ++.+..++|+.+..+... .+. +...|+|||. .+.. .+++..
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR-GLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT-TSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc-CCCccc
Confidence 4677999999999999888777665 788999999887654432 233 3478999994 4433 445778
Q ss_pred eeEEEe
Q 006800 373 VTYLVL 378 (630)
Q Consensus 373 i~~lVv 378 (630)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888775
No 207
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=78.96 E-value=5.2 Score=35.69 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=50.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHHc-CCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
+.++||.|+++..+..++..+... ++.+..++|+.+..+... .+.. ...|+|||. .+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-STTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----ch-hcCcchhhC
Confidence 456999999999999888777665 888999999877654432 2333 478999994 22 224456777
Q ss_pred eEEEe
Q 006800 374 TYLVL 378 (630)
Q Consensus 374 ~~lVv 378 (630)
.+||.
T Consensus 101 ~~Vi~ 105 (172)
T 1t5i_A 101 NIAFN 105 (172)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87776
No 208
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=78.54 E-value=5.8 Score=42.04 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=16.8
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 263 RDIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
.-+.++|++|+|||.. +..|..++
T Consensus 294 eVI~LVGpNGSGKTTL--l~~LAgll 317 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTT--IGKLARQF 317 (503)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEEECCCcccHHHH--HHHHHHHh
Confidence 3578999999999964 34444443
No 209
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=78.19 E-value=8.7 Score=38.28 Aligned_cols=44 Identities=20% Similarity=0.131 Sum_probs=25.3
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P 306 (630)
.|.-+++.|++|+|||.. ++.+...+..... ..+.+.+++++.-
T Consensus 106 ~G~i~~i~G~~GsGKT~l-a~~la~~~~~~~~-~gg~~~~vlyi~~ 149 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQL-CHQLSVNVQLPPE-KGGLSGKAVYIDT 149 (324)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHTTSCGG-GTCCSCEEEEEES
T ss_pred CCcEEEEECCCCCCHhHH-HHHHHHHHhcccc-cCCCCCeEEEEEC
Confidence 346789999999999964 4444443322111 0111446777754
No 210
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=77.89 E-value=1.9 Score=45.10 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=31.1
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~ 312 (630)
...++++.|+||||||.. +.+++..++.. +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 347899999999999986 34445444432 556788888777754
No 211
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=77.82 E-value=8.8 Score=43.28 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.4
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
...++++.||+|+|||.+
T Consensus 206 ~~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SSCEEEEECCTTSSHHHH
T ss_pred CCCCeEEEcCCCCCHHHH
Confidence 346899999999999965
No 212
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=77.39 E-value=10 Score=34.43 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=52.0
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Cc----c-cCCCCCCccE
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----A-RGLDIKSIKS 541 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~----~-~Gldi~~v~~ 541 (630)
..++||.+|++.-+..+++.+... .+.+..++|+.+.......+. ....|+|+|. .+ . ..+++..++.
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 457999999999999999998876 468899999887654433332 2578999994 22 2 3466777888
Q ss_pred EEE
Q 006800 542 VVN 544 (630)
Q Consensus 542 VI~ 544 (630)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 213
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.31 E-value=7.7 Score=35.91 Aligned_cols=92 Identities=14% Similarity=0.151 Sum_probs=54.3
Q ss_pred EEcCCccccHHH-HH---HhccCCCCCCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcC
Q 006800 448 HVIPSDAEKLPW-LL---EKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSG 519 (630)
Q Consensus 448 ~~~~~~~~k~~~-l~---~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g 519 (630)
...+....|-.. ++ ..+.......++||.+|++.-+..+++.+... ++.+..++|+.+..+.... +.
T Consensus 56 v~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-- 130 (224)
T 1qde_A 56 AQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR-- 130 (224)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--
T ss_pred EECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--
Confidence 344455566543 22 33333234568999999999998888877653 6789999998765544322 22
Q ss_pred CceEEEEcC-Cc-----ccCCCCCCccEEEE
Q 006800 520 VYHVLIATD-VA-----ARGLDIKSIKSVVN 544 (630)
Q Consensus 520 ~~~VLvaT~-~~-----~~Gldi~~v~~VI~ 544 (630)
..+|+|+|. .+ ...+++..+++||.
T Consensus 131 ~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 131 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp TCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 378999994 22 24566777777775
No 214
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=77.07 E-value=9.4 Score=37.90 Aligned_cols=30 Identities=27% Similarity=0.143 Sum_probs=20.3
Q ss_pred HHHHHHc-----CCCEEEEeCCCChHHHHHHHHHHH
Q 006800 255 ALPIILS-----GRDIIGIAKTGSGKTAAFVLPMIV 285 (630)
Q Consensus 255 ~i~~il~-----g~d~l~~a~TGsGKT~~~~l~~l~ 285 (630)
.+..++. |.-+++.|++|+|||.. ++.+..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~l-a~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQI-MHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHH-HHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHH-HHHHHH
Confidence 4555553 45789999999999964 344333
No 215
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=77.02 E-value=4.3 Score=37.96 Aligned_cols=71 Identities=18% Similarity=0.339 Sum_probs=48.2
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Cc-----ccCCCCCCcc
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARGLDIKSIK 540 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~---~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~-----~~Gldi~~v~ 540 (630)
..++||.+|++.-+..+++.+... ++.+..++|+.+...+... +.. ...|+|+|. .+ ...+++..++
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK-GVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS-CCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC-CCCEEEECHHHHHHHHHcCCcCcccce
Confidence 457999999999999999988874 7889999998775544332 233 478999993 22 1356777888
Q ss_pred EEEE
Q 006800 541 SVVN 544 (630)
Q Consensus 541 ~VI~ 544 (630)
+||.
T Consensus 170 ~lVi 173 (228)
T 3iuy_A 170 YLVI 173 (228)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 216
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=76.20 E-value=3 Score=47.15 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=35.2
Q ss_pred CCCCCcccCCCCHHHHHHHHHcC-C--CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHH
Q 006800 222 RPVKTFEDCGFSTQLMHAISKQG-Y--EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286 (630)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~-~--~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~ 286 (630)
.|-.+|.+.+....+.+.|...= + ..|.-++... +...+.+|+.+|.|+|||+. ..++.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l--AkaiA~ 533 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL--AKAIAN 533 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH--HHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH--HHHHHH
Confidence 35578999888888877776531 1 1111111000 01236799999999999964 334444
No 217
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=75.85 E-value=20 Score=33.87 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=50.9
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Ccc-----cCCCCCCc
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA-----RGLDIKSI 539 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~~-----~Gldi~~v 539 (630)
..++||.+|++.-+..+++.+... ++.+..++|+.+.......+ .....|+|+|. .+. ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999998888877653 57888999988765443322 24578999994 322 24577778
Q ss_pred cEEEE
Q 006800 540 KSVVN 544 (630)
Q Consensus 540 ~~VI~ 544 (630)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88775
No 218
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.45 E-value=3.7 Score=46.43 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=14.5
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
+.+|+.||.|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999964
No 219
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=75.38 E-value=29 Score=37.20 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=55.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHH-cCCcEEEeChHHHHHHHHccccccCc
Q 006800 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELK-AGCEIVIATPGRLIDMLKMKALTMSR 372 (630)
Q Consensus 297 ~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~ 372 (630)
.+.++||.|+|+.-|..++..+.+... .++.+..++|+........ .+. +..+|+|||. .+. ..+.+..
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~-~GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA-RGMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT-SSCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh-cCCCccc
Confidence 366799999999999999888877644 2788888999877654432 223 3579999994 333 3456777
Q ss_pred eeEEEecc
Q 006800 373 VTYLVLDE 380 (630)
Q Consensus 373 i~~lVvDE 380 (630)
+.+||.-.
T Consensus 411 v~~VI~~~ 418 (563)
T 3i5x_A 411 VHEVLQIG 418 (563)
T ss_dssp CCEEEEES
T ss_pred CCEEEEEC
Confidence 88877543
No 220
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=75.15 E-value=14 Score=37.13 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=18.1
Q ss_pred HHHHHH-----cCCCEEEEeCCCChHHHH
Q 006800 255 ALPIIL-----SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il-----~g~d~l~~a~TGsGKT~~ 278 (630)
.+..++ .|+-+.+.+|+|+|||..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQL 147 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 455555 346789999999999964
No 221
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=75.00 E-value=3.8 Score=33.47 Aligned_cols=47 Identities=19% Similarity=0.153 Sum_probs=37.6
Q ss_pred HHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCC
Q 006800 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (630)
Q Consensus 459 ~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 505 (630)
.|...+.......+++|||.+-..+...+..|...|+.+..+.||+.
T Consensus 44 ~l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 44 ELREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 34444444445678999999998999999999999999999999864
No 222
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=74.81 E-value=3.2 Score=37.62 Aligned_cols=120 Identities=13% Similarity=0.206 Sum_probs=70.0
Q ss_pred cHHHHHHHHHHHcCC--CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006800 249 TSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 249 ~~~Q~~~i~~il~g~--d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.+-|..++..++..+ -.++.+.-|++||...+.-++... ...|..+.+|+|+..-..... ...+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a-------~~~Gr~V~vLAp~~~s~~~l~-------~~~~ 101 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMA-------REQGREVQIIAADRRSQMNMK-------QDER 101 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHH-------HHTTCCEEEECSTTHHHHHHS-------CTTT
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHH-------HhcCeEEEEEcCchHHHHHHH-------hhcC
Confidence 467889998887554 567788999999977433333332 234788999999976665432 1111
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc-CCCCc
Q 006800 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQ 405 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l-~~~~q 405 (630)
+.. +++ +. ..+......+..=+.+|||||-.|. ...+..++... ..+.|
T Consensus 102 l~~--------------------~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naq 151 (189)
T 2l8b_A 102 LSG--------------------ELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQ 151 (189)
T ss_dssp CSS--------------------CSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCC
T ss_pred cCc--------------------cee-eh-----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCE
Confidence 110 011 11 1111222223445589999999976 34445554433 34577
Q ss_pred EEEEeec
Q 006800 406 TLLFSAT 412 (630)
Q Consensus 406 ~l~~SAT 412 (630)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 7777544
No 223
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=74.59 E-value=19 Score=37.28 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=14.2
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.++-+++++++|+|||.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~ 114 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTT 114 (425)
T ss_dssp SSEEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345577889999999965
No 224
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=74.52 E-value=9.8 Score=43.24 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.5
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.++.+++.||+|+|||..
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 457899999999999964
No 225
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=74.27 E-value=1.9 Score=41.75 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=16.5
Q ss_pred HHcCCCEEEEeCCCChHHHH
Q 006800 259 ILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 259 il~g~d~l~~a~TGsGKT~~ 278 (630)
+..|.-++++||||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34677789999999999954
No 226
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=73.43 E-value=3.5 Score=38.28 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=48.3
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC--------CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-C----cc-cCCC
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK--------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-V----AA-RGLD 535 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~--------~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~----~~-~Gld 535 (630)
..++||.+|++.-+..+++.+.+. ++.+..++|+.+...... .+ .+...|+|+|. . +. ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999998888877653 678889999875433211 11 23578999993 2 22 2356
Q ss_pred CCCccEEEE
Q 006800 536 IKSIKSVVN 544 (630)
Q Consensus 536 i~~v~~VI~ 544 (630)
+..++.||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 667777775
No 227
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=73.09 E-value=5.3 Score=41.53 Aligned_cols=18 Identities=33% Similarity=0.387 Sum_probs=14.5
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-++++||||||||..
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 344578999999999964
No 228
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=73.00 E-value=4.7 Score=47.37 Aligned_cols=74 Identities=11% Similarity=0.221 Sum_probs=57.2
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhC----CC----cEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-CcccCCC-CCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQK----GF----KAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAARGLD-IKS 538 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~----~~----~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~~~Gld-i~~ 538 (630)
...++||.+|++.-+..+++.+... ++ .++.+||+.+...+.+....+.+ ..|+|+|. .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3568999999999998888887653 56 89999999999888777777776 89999994 3332222 667
Q ss_pred ccEEEE
Q 006800 539 IKSVVN 544 (630)
Q Consensus 539 v~~VI~ 544 (630)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888875
No 229
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.68 E-value=7.9 Score=40.29 Aligned_cols=90 Identities=20% Similarity=0.233 Sum_probs=61.1
Q ss_pred cCCccccHHHHHHhccCC--CCCCCEEEEccchhhHHHHHHHHHhC-CC---cEEEEeCCCCHHHHHHHHHHhhcCCceE
Q 006800 450 IPSDAEKLPWLLEKLPGM--IDDGDVLVFASKKTTVDEIESQLAQK-GF---KAAALHGDKDQASRMEILQKFKSGVYHV 523 (630)
Q Consensus 450 ~~~~~~k~~~l~~~l~~~--~~~~~iLIF~~s~~~~~~l~~~L~~~-~~---~~~~ihg~~~~~~r~~~~~~F~~g~~~V 523 (630)
.+....|....+..+... ...+++||.||+..-+..+.+.+.+. +. .+..+||+....++..... ...|
T Consensus 30 ~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~i 104 (494)
T 1wp9_A 30 LPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKV 104 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSE
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCE
Confidence 344455654433332222 24678999999999998888888765 55 8999999998877654432 4679
Q ss_pred EEEcC-Ccc-----cCCCCCCccEEEE
Q 006800 524 LIATD-VAA-----RGLDIKSIKSVVN 544 (630)
Q Consensus 524 LvaT~-~~~-----~Gldi~~v~~VI~ 544 (630)
+|+|. .+. ..+....+++||.
T Consensus 105 vv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 105 IVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp EEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred EEecHHHHHHHHhcCCcchhhceEEEE
Confidence 99993 332 2456777787775
No 230
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=71.86 E-value=38 Score=36.55 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=55.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHH-cCCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
+.++||.|+|+..|..++..+.+... .++.+..++|+........ .+. ....|+|||- .+. ..+.+..+
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~-~GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA-RGMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT-SSCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh-cCCCcccC
Confidence 56799999999999999888887654 2788888999877654432 233 3578999994 333 34567788
Q ss_pred eEEEecc
Q 006800 374 TYLVLDE 380 (630)
Q Consensus 374 ~~lVvDE 380 (630)
.+||.-.
T Consensus 361 ~~VI~~~ 367 (579)
T 3sqw_A 361 HEVLQIG 367 (579)
T ss_dssp CEEEEES
T ss_pred CEEEEcC
Confidence 8887644
No 231
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=71.24 E-value=3.4 Score=50.55 Aligned_cols=128 Identities=20% Similarity=0.312 Sum_probs=74.3
Q ss_pred HHHHHHc------CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCce
Q 006800 255 ALPIILS------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328 (630)
Q Consensus 255 ~i~~il~------g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~ 328 (630)
.+..++. |+-+.+.+|.|||||.. +++++....+. |..++++.+-.+|.... ++++ |+.
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl-~~~~~a~~~~~-------g~~~~~i~~e~~~~~~~---~~~~----Gv~ 1482 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTL-TLQVIAAAQRE-------GKTCAFIDAEHALDPIY---ARKL----GVD 1482 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHH-HHHHHHHHHHT-------TCCEEEECTTSCCCHHH---HHHT----TCC
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHH-HHHHHHHHHhc-------CCeEEEEecCCCCCHHH---HHHc----CCC
Confidence 4555554 46799999999999975 56777665443 66788888866665432 3343 443
Q ss_pred EEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc--cccccCceeEEEecchhhhhcCC-----------------c
Q 006800 329 VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDLG-----------------F 389 (630)
Q Consensus 329 ~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~--~~~~l~~i~~lVvDEah~~~~~~-----------------~ 389 (630)
. .+++++-|..-...|.. ....-..+++||||-+-.+.... +
T Consensus 1483 ~-------------------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m 1543 (1706)
T 3cmw_A 1483 I-------------------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM 1543 (1706)
T ss_dssp G-------------------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHH
T ss_pred H-------------------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHH
Confidence 2 22566666433222221 11122358899999988764321 1
Q ss_pred HHHHHHHHhhcCCCCcEEEEeecccHH
Q 006800 390 EPQIRSIVGQIRPDRQTLLFSATMPRK 416 (630)
Q Consensus 390 ~~~v~~i~~~l~~~~q~l~~SAT~~~~ 416 (630)
...++.+...++...-+++|...+...
T Consensus 1544 ~~~lr~l~~~~~~~~~~~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1544 SQAMRKLAGNLKQSNTLLIFINQIRMK 1570 (1706)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECBC--
T ss_pred HHHHHHHHHHHHhCCcEEEEeeccccc
Confidence 223444455555555677777776543
No 232
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=71.24 E-value=13 Score=37.36 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=28.7
Q ss_pred HHHHHc-----CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEccc
Q 006800 256 LPIILS-----GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (630)
Q Consensus 256 i~~il~-----g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Pt 307 (630)
+..++. |.-+++.|++|+|||.. ++.+...+..... ..+.+.+++++.-.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtl-a~~la~~~~~~~~-~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQL-SHTLCVTAQLPGA-GGYPGGKIIFIDTE 165 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHH-HHHHHHHTTSCBT-TTBCCCEEEEEESS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHH-HHHHHHHHhcccc-cCCCCCeEEEEECC
Confidence 555553 45689999999999964 4444443222111 11234567777643
No 233
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=70.75 E-value=4.5 Score=41.07 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=14.9
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.+.-++++||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455789999999999954
No 234
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=70.74 E-value=24 Score=37.44 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=13.1
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
.+++++++|+|||.+
T Consensus 103 vI~ivG~~GvGKTTl 117 (504)
T 2j37_W 103 VIMFVGLQGSGKTTT 117 (504)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999965
No 235
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=70.61 E-value=4.2 Score=37.83 Aligned_cols=32 Identities=28% Similarity=0.247 Sum_probs=26.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHH
Q 006800 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~ 278 (630)
.-+.-|..++..+..|.-+.+.+|.|+|||..
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 34556778888888999999999999999954
No 236
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=70.60 E-value=6.7 Score=46.68 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=26.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccH
Q 006800 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (630)
Q Consensus 265 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr 308 (630)
-++.|..|||||.+ ++.-+.+++... ..+.++|+|||..
T Consensus 4 ~lV~agAGSGKT~~-l~~ri~~ll~~~----~~~~~il~lVP~q 42 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKL-IINSIQDELRRA----PFGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEEECTTSSHHHH-HHHHHHHHHHHC----TTSSCEEEECCGG
T ss_pred EEEEeCCCCChHHH-HHHHHHHHHHhC----CCCCcEEEEecCc
Confidence 37889999999986 444444544321 2346799999975
No 237
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=70.54 E-value=4.5 Score=43.28 Aligned_cols=31 Identities=29% Similarity=0.142 Sum_probs=22.7
Q ss_pred CcHHHHHHHHH-HHcCCCEEEEeCCCChHHHH
Q 006800 248 PTSIQCQALPI-ILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 248 ~~~~Q~~~i~~-il~g~d~l~~a~TGsGKT~~ 278 (630)
+++.+...+.. +..|..++++||||||||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 44555555544 45778899999999999964
No 238
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=70.04 E-value=13 Score=37.76 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=52.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHHc-CCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
+.++||.|+++..|..++..+.+. ++.+..++|+....+... .+.. ...|+|||. .+ ...+.+..+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccCC
Confidence 567999999999999888777765 788889999887655433 2333 478999994 33 234567788
Q ss_pred eEEEe
Q 006800 374 TYLVL 378 (630)
Q Consensus 374 ~~lVv 378 (630)
.+||.
T Consensus 336 ~~Vi~ 340 (412)
T 3fht_A 336 SVVIN 340 (412)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88874
No 239
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.67 E-value=2.8 Score=43.83 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=31.0
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHH
Q 006800 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~ 278 (630)
.|-.+|++.+--....+.|... .+..|.-++.-.+ ---+.+|+.||+|+|||+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHH
Confidence 4567899987666665555431 0111111111110 1237899999999999964
No 240
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=69.65 E-value=12 Score=37.24 Aligned_cols=71 Identities=17% Similarity=0.295 Sum_probs=50.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHHc-CCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
+.++||.|+++.-+..+++.+.+. ++.+..++|+.+..+... .+.. ...|+|||. .+.. .+++..+
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~~ 307 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVNDL 307 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCcccC
Confidence 567899999999999888777765 788899999877654432 2333 478999994 2222 3456778
Q ss_pred eEEEe
Q 006800 374 TYLVL 378 (630)
Q Consensus 374 ~~lVv 378 (630)
.+||.
T Consensus 308 ~~Vi~ 312 (367)
T 1hv8_A 308 NCVIN 312 (367)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87775
No 241
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=69.46 E-value=18 Score=36.56 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=59.6
Q ss_pred cCCccccHHH-H---HHhccCCCCCCCEEEEccchhhHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHhhcCCc
Q 006800 450 IPSDAEKLPW-L---LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVY 521 (630)
Q Consensus 450 ~~~~~~k~~~-l---~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~F~~g~~ 521 (630)
.+....|... + +..+.......++||.||++.-+..+++.+.. .++.+..++|+.+..+....+. ..
T Consensus 65 ~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~ 139 (394)
T 1fuu_A 65 AQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DA 139 (394)
T ss_dssp CCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HC
T ss_pred CCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CC
Confidence 3444555433 2 23333333456899999999999888887765 3688999999998766554443 46
Q ss_pred eEEEEcC-Cc-----ccCCCCCCccEEEE
Q 006800 522 HVLIATD-VA-----ARGLDIKSIKSVVN 544 (630)
Q Consensus 522 ~VLvaT~-~~-----~~Gldi~~v~~VI~ 544 (630)
.|+|+|. .+ ...+.+..+++||.
T Consensus 140 ~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 140 QIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 7999993 22 13455667777775
No 242
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=69.28 E-value=14 Score=35.29 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=52.0
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-----Ccc--cCCCCCC
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA--RGLDIKS 538 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-----~~~--~Gldi~~ 538 (630)
..++||.+|++.-+..+++.+... +..+..++|+......... +..| ..|+|+|. .+. .++++..
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 457999999999999888888763 6788999998876554333 3344 88999993 111 3467788
Q ss_pred ccEEEE
Q 006800 539 IKSVVN 544 (630)
Q Consensus 539 v~~VI~ 544 (630)
++.||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 243
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=69.03 E-value=15 Score=37.08 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=54.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH---HHHHc-CCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF---KELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
+.++||.|+++.-|..++..+... ++.+..++|+.+..+.. ..+.. ...|+|||. .+ ...+++..+
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCcccC
Confidence 567999999999998888777665 78888999988765443 23333 478999994 22 345567889
Q ss_pred eEEEecchh
Q 006800 374 TYLVLDEAD 382 (630)
Q Consensus 374 ~~lVvDEah 382 (630)
.+||.-...
T Consensus 313 ~~Vi~~~~p 321 (395)
T 3pey_A 313 SMVVNYDLP 321 (395)
T ss_dssp EEEEESSCC
T ss_pred CEEEEcCCC
Confidence 988864443
No 244
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=68.84 E-value=4.2 Score=40.61 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=21.6
Q ss_pred HHHHHcCCCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 256 i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
...+..+.++++.||+|+|||.. +-++...
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~l--a~~la~~ 69 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLS--VNTLAKT 69 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHH--HHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHH--HHHHHHH
Confidence 34455788999999999999954 3344443
No 245
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=66.98 E-value=6.4 Score=41.96 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCCEEEEeCCCChHHHH
Q 006800 252 QCQALPIILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 252 Q~~~i~~il~g~d~l~~a~TGsGKT~~ 278 (630)
-..++-.+..+.++++.||+|+|||..
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 344556677889999999999999964
No 246
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=66.75 E-value=11 Score=37.25 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=50.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---HHc-CCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
+.++||.|+|+.-+..++..+... ++.+..++|+.+...+... +.. ..+|+|||- .+. ..+.+..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~-~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAA-RGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTT-CSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhh-cCccccce
Confidence 456999999999988777666554 8899999999876554333 333 478999993 333 34557788
Q ss_pred eEEEe
Q 006800 374 TYLVL 378 (630)
Q Consensus 374 ~~lVv 378 (630)
.+||.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 87774
No 247
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=66.66 E-value=15 Score=35.75 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=15.5
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
....+++.||+|+|||..
T Consensus 49 ~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 357899999999999964
No 248
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=66.59 E-value=6.2 Score=31.09 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=33.8
Q ss_pred ccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCC
Q 006800 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (630)
Q Consensus 464 l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 505 (630)
+..... .+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 48 ~~~l~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 48 EHGLPR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CCCCCS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred HHhCCC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 434434 78999999998999999999999999888888864
No 249
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=66.56 E-value=23 Score=35.91 Aligned_cols=72 Identities=11% Similarity=0.171 Sum_probs=51.8
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-C----cc-cCCCCCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-V----AA-RGLDIKS 538 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~----~~-~Gldi~~ 538 (630)
...++||.||++.-+..+++.+... ++.+..++|+......... ..+...|+|+|. . +. ...++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 3458999999999998888877654 6789999999876543222 235678999993 2 22 3456777
Q ss_pred ccEEEE
Q 006800 539 IKSVVN 544 (630)
Q Consensus 539 v~~VI~ 544 (630)
+++||.
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 250
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=66.01 E-value=12 Score=37.89 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=18.5
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
....+++.||+|+|||.+ .-++...
T Consensus 50 ~~~~vll~GppGtGKT~l--a~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL--AETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH--HHHHHHH
Confidence 456899999999999964 3344444
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=65.95 E-value=4.2 Score=37.29 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=17.9
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
.|+-+.++||+|+|||.. +-++..++
T Consensus 3 ~g~~i~lvGpsGaGKSTL--l~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL--LKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 467899999999999964 44444443
No 252
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=65.93 E-value=3.4 Score=37.25 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=15.9
Q ss_pred HcCCCEEEEeCCCChHHHH
Q 006800 260 LSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~ 278 (630)
+.|+-++++||+|+|||..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567789999999999964
No 253
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=65.86 E-value=35 Score=37.61 Aligned_cols=77 Identities=16% Similarity=0.329 Sum_probs=56.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---HHc-CCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
+.++||.|+|+..|..+...+... |+.+..++|+....+.... +.. ..+|+|||- .+ ...+.+..+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCCC
Confidence 668999999999998887777665 8888888887765443322 333 478999984 22 335567889
Q ss_pred eEEEecchhhh
Q 006800 374 TYLVLDEADRM 384 (630)
Q Consensus 374 ~~lVvDEah~~ 384 (630)
++||+=+++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999888763
No 254
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=65.49 E-value=19 Score=36.70 Aligned_cols=71 Identities=18% Similarity=0.304 Sum_probs=51.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH---HHHHc-CCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF---KELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
..++||.|+++..+..++..+.+. ++.+..++|+.+..+.. ..+.. ...|+|||. .+ ...+++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccC
Confidence 447999999999998887777665 78888999987755433 22333 478999994 22 234567788
Q ss_pred eEEEe
Q 006800 374 TYLVL 378 (630)
Q Consensus 374 ~~lVv 378 (630)
.+||.
T Consensus 346 ~~Vi~ 350 (410)
T 2j0s_A 346 SLIIN 350 (410)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88875
No 255
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.42 E-value=3 Score=43.34 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=31.8
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHH
Q 006800 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~ 278 (630)
.|-.+|++.+=-..+.+.|... .+..|.-++...+ ---+.+|+.||+|+|||+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHH
Confidence 4567899997556555555431 1112222222111 1237899999999999964
No 256
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=65.37 E-value=17 Score=37.79 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=49.9
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHHc-CCcEEEeChHHHHHHHHccccccCceeE
Q 006800 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRVTY 375 (630)
Q Consensus 300 ~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i~~ 375 (630)
++||.|+|+.-|..++..+.+. ++.+..++|+....+... .+.. ...|+|||. .+. ..+.+..+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~-rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VAS-RGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGT-SSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhh-CCCCcccCCE
Confidence 3999999999998887777665 888999999877654432 3333 478999995 332 3456778888
Q ss_pred EEe
Q 006800 376 LVL 378 (630)
Q Consensus 376 lVv 378 (630)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 257
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=65.01 E-value=6.7 Score=40.25 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=27.6
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~ 309 (630)
.+.+++++|+||+|||... -.++..+.. .+.+++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~-~~~~~~~~~-------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTA-KMLLLREYM-------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHH-HHHHHHHHT-------TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHH-HHHHHHHHH-------CCCEEEEEeCCcC
Confidence 5678999999999999643 333333322 2566788877654
No 258
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=64.99 E-value=13 Score=35.98 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCCCCcHHHHHH-HHHHHcCC-----CEEEEeCCCChHHHHH
Q 006800 234 TQLMHAISKQGYEKPTSIQCQA-LPIILSGR-----DIIGIAKTGSGKTAAF 279 (630)
Q Consensus 234 ~~l~~~l~~~~~~~~~~~Q~~~-i~~il~g~-----d~l~~a~TGsGKT~~~ 279 (630)
..+.+.|+-+|+. |++... +...+.++ .+++.||.|+|||+.+
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3677778777765 555433 44455543 5999999999999753
No 259
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=64.85 E-value=9.3 Score=37.58 Aligned_cols=68 Identities=16% Similarity=0.078 Sum_probs=48.9
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Cc-----c-cCCCCC
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----A-RGLDIK 537 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~-----~-~Gldi~ 537 (630)
..++||.+|++.-+..++..+... ++.+..++|+...... ......|||+|. .+ . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999988887653 5678888887653221 134568999994 22 1 357788
Q ss_pred CccEEEE
Q 006800 538 SIKSVVN 544 (630)
Q Consensus 538 ~v~~VI~ 544 (630)
.+++||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8888886
No 260
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=64.85 E-value=12 Score=44.65 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=42.7
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhcCCc----ccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006800 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPE----LQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~~~~----~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
..++.|.-|||||.+...-++..++.... -..-.-..+|+|+=|+..|.++.+.+.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 45999999999998766666666654210 0011234699999999999999988877654
No 261
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=64.44 E-value=37 Score=36.20 Aligned_cols=125 Identities=15% Similarity=0.223 Sum_probs=59.8
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.-+++.+++|+|||.. +..++... .. .|.+++++++... ..|+...+..+ ++. ..
T Consensus 280 ~G~i~~i~G~~GsGKSTL-l~~l~g~~-~~------~G~~vi~~~~ee~-~~~l~~~~~~~----g~~---------~~- 336 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLL-VSRFVENA-CA------NKERAILFAYEES-RAQLLRNAYSW----GMD---------FE- 336 (525)
T ss_dssp SSCEEEEEECTTSSHHHH-HHHHHHHH-HT------TTCCEEEEESSSC-HHHHHHHHHTT----SCC---------HH-
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHH-Hh------CCCCEEEEEEeCC-HHHHHHHHHHc----CCC---------HH-
Confidence 556789999999999964 22222222 11 1445677765322 22444333221 221 11
Q ss_pred HHHHHHcCC-cEEE-----eChHHHHHHHHccccccCceeEEEecchhhhhcCC-----cHHHHHHHHhhcCCC-CcEEE
Q 006800 341 QFKELKAGC-EIVI-----ATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-----FEPQIRSIVGQIRPD-RQTLL 408 (630)
Q Consensus 341 ~~~~l~~~~-dIiv-----~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~-----~~~~v~~i~~~l~~~-~q~l~ 408 (630)
... ..|. .+.- -+.+.....+.... ...+.++||+| -=.-++.. ....+..++..++.. .-+|+
T Consensus 337 ~~~--~~g~~~~~~~~p~~LS~g~~q~~~~a~~-l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvil 412 (525)
T 1tf7_A 337 EME--RQNLLKIVCAYPESAGLEDHLQIIKSEI-NDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLF 412 (525)
T ss_dssp HHH--HTTSEEECCCCGGGSCHHHHHHHHHHHH-HTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHH--hCCCEEEEEeccccCCHHHHHHHHHHHH-HhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEE
Confidence 111 1111 1111 13344333332221 23567899999 55555665 566666666665433 33444
Q ss_pred Eeec
Q 006800 409 FSAT 412 (630)
Q Consensus 409 ~SAT 412 (630)
.|..
T Consensus 413 vsh~ 416 (525)
T 1tf7_A 413 TNTS 416 (525)
T ss_dssp EEEC
T ss_pred EECc
Confidence 4444
No 262
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=64.10 E-value=5.6 Score=33.31 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=35.9
Q ss_pred HHHhccCCCCCCCEEEEccchhh--HHHHHHHHHhCCCcEEEEeCCCC
Q 006800 460 LLEKLPGMIDDGDVLVFASKKTT--VDEIESQLAQKGFKAAALHGDKD 505 (630)
Q Consensus 460 l~~~l~~~~~~~~iLIF~~s~~~--~~~l~~~L~~~~~~~~~ihg~~~ 505 (630)
|...+.......+++|||.+-.. +..++..|...|+.+..+.||+.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 44444444456689999999877 88999999999999888889853
No 263
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=64.08 E-value=3.9 Score=32.77 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=32.6
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 505 (630)
...+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4568999999999999999999999999999988753
No 264
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=63.79 E-value=4.6 Score=38.78 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.2
Q ss_pred HcCCCEEEEeCCCChHHHH
Q 006800 260 LSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~ 278 (630)
..+..+++.|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3567999999999999964
No 265
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=63.69 E-value=3.8 Score=41.19 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.9
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
+-++++||||+|||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999965
No 266
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=63.67 E-value=4.9 Score=40.89 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=19.9
Q ss_pred HHcCCCEEEEeCCCChHHHHHHHHHHHH
Q 006800 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVH 286 (630)
Q Consensus 259 il~g~d~l~~a~TGsGKT~~~~l~~l~~ 286 (630)
+..|..++++||||||||.. +-++..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl--l~~l~~ 197 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL--MKALMQ 197 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH--HHHHHT
T ss_pred HhcCCEEEEECCCCCCHHHH--HHHHHh
Confidence 45889999999999999964 444443
No 267
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=63.65 E-value=7.9 Score=40.49 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=44.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHc-CCcEEEeChHHHHHHHHccccccCceeEE
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i~~l 376 (630)
+.++||+||++.-|..+++.+.+. ++++..++|. .+......+.. ..+|+|||. .+.. .+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~-----v~e~-GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILATD-----IAEM-GANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEESS-----STTC-CTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEECC-----hhhe-eeccC-ceEE
Confidence 557999999999999988887775 7888888884 34344444444 479999994 3333 33466 7776
Q ss_pred E
Q 006800 377 V 377 (630)
Q Consensus 377 V 377 (630)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 268
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=63.47 E-value=4.2 Score=37.20 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=15.9
Q ss_pred HcCCCEEEEeCCCChHHHH
Q 006800 260 LSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~ 278 (630)
..++.++++|++|||||.+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCCEEEEEcCCCCCHHHH
Confidence 3567899999999999965
No 269
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=63.37 E-value=28 Score=35.35 Aligned_cols=92 Identities=22% Similarity=0.262 Sum_probs=60.8
Q ss_pred cCCccccHHH----HHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCc
Q 006800 450 IPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVY 521 (630)
Q Consensus 450 ~~~~~~k~~~----l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~ 521 (630)
.+....|... ++..+.......++||.+|++.-+..+++.+... +..+..++|+.+.... ...+..+..
T Consensus 84 a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 160 (414)
T 3eiq_A 84 AQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAP 160 (414)
T ss_dssp CCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCC
T ss_pred CCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCC
Confidence 3444556443 2333333334568999999999998888888764 6788888888765443 445566788
Q ss_pred eEEEEcC-----Ccc-cCCCCCCccEEEE
Q 006800 522 HVLIATD-----VAA-RGLDIKSIKSVVN 544 (630)
Q Consensus 522 ~VLvaT~-----~~~-~Gldi~~v~~VI~ 544 (630)
.|+|+|. .+. ..+.+..+++||.
T Consensus 161 ~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 161 HIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp SEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred CEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 9999993 222 3356667777775
No 270
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=62.91 E-value=4 Score=33.10 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=32.7
Q ss_pred CCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCC
Q 006800 467 MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (630)
Q Consensus 467 ~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~ 504 (630)
...+.+++|||.+-..+...+..|...|+.+..+.||+
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 33456899999998889999999999999988888875
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=62.82 E-value=29 Score=34.12 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=13.9
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
++-+++++++|+|||..
T Consensus 104 ~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 34578999999999964
No 272
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=62.76 E-value=4 Score=32.84 Aligned_cols=37 Identities=11% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 505 (630)
...+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4568999999998999999999999999999998753
No 273
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=62.63 E-value=8.3 Score=37.94 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=15.2
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.++-+++++++|+|||.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTT 121 (296)
T ss_dssp CSSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999965
No 274
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=62.55 E-value=9.7 Score=39.67 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=40.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHc-CCcEEEeCh
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATP 356 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp 356 (630)
+.++||+||++.-|..+++.+.+. ++++..++|+ .+......+.. ..+|+|||-
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRK-TFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTT-THHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCc-cHHHHHHhhcCCCCeEEEECc
Confidence 446999999999999888887776 7888888876 34444444444 479999994
No 275
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.25 E-value=3 Score=43.78 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=32.4
Q ss_pred CCCCCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHH
Q 006800 222 RPVKTFEDCGFSTQLMHAISKQG---YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~ 278 (630)
.|-.+|++.+-...+.+.|...= +..|--++.-. +---+.+|+.||+|+|||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 45578999987777776665421 11111111111 01237899999999999964
No 276
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=62.19 E-value=3.4 Score=36.79 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=14.5
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
++-++++|++|||||.+
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45689999999999965
No 277
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=61.47 E-value=8.1 Score=40.50 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=25.8
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P 306 (630)
.|.-+++.|++|+|||. +++-+..++..+ +.+++|+.-
T Consensus 196 ~G~liiIaG~pG~GKTt-lal~ia~~~a~~-------g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTA-FALKQAKNMSDN-------DDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHH-HHHHHHHHHHHT-------TCEEEEECS
T ss_pred CCcEEEEEeCCCCChHH-HHHHHHHHHHHc-------CCEEEEEEC
Confidence 34568999999999996 455555554332 456787764
No 278
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=61.44 E-value=3.9 Score=37.73 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.1
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.++-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456789999999999964
No 279
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=61.38 E-value=4.8 Score=36.08 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=14.9
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
++.++++|++|||||.+
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56789999999999965
No 280
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=61.15 E-value=4.3 Score=34.22 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=32.2
Q ss_pred CC-CCEEEEc-cchhhHHHHHHHHHhCCCcEEEEeCCCCH
Q 006800 469 DD-GDVLVFA-SKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (630)
Q Consensus 469 ~~-~~iLIF~-~s~~~~~~l~~~L~~~~~~~~~ihg~~~~ 506 (630)
.. .+++||| .+-..+..++..|...|+.+..+.|++..
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 34 6899999 57778889999999999999999998753
No 281
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=61.15 E-value=7.9 Score=39.13 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=24.6
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc
Q 006800 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P 306 (630)
|+-+++.+++|+|||.. ++.++..+... +.+++++.-
T Consensus 61 G~iv~I~G~pGsGKTtL-al~la~~~~~~-------g~~vlyi~~ 97 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTV-ALHAVANAQAA-------GGIAAFIDA 97 (349)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHHhC-------CCeEEEEEC
Confidence 46789999999999964 45555444332 445677653
No 282
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=60.93 E-value=1.5e+02 Score=32.51 Aligned_cols=76 Identities=16% Similarity=0.284 Sum_probs=55.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHHc-CCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
+.++||.|+|+..|..+...+... ++.+..++|+....+... .+.. ..+|+|||- .+ ...+.+..+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCCC
Confidence 668999999999998887777665 888888888776544432 2343 478999983 22 234567789
Q ss_pred eEEEecchhh
Q 006800 374 TYLVLDEADR 383 (630)
Q Consensus 374 ~~lVvDEah~ 383 (630)
++||+=+++.
T Consensus 509 ~lVI~~d~d~ 518 (664)
T 1c4o_A 509 SLVAILDADK 518 (664)
T ss_dssp EEEEETTTTS
T ss_pred CEEEEeCCcc
Confidence 9998877765
No 283
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=60.75 E-value=5 Score=37.05 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.3
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|+-++++||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466789999999999964
No 284
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=60.67 E-value=6.6 Score=34.66 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=18.2
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
.+..+++.|++|||||.. +-++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl--~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTI--GRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH--HHHHHHH
Confidence 356789999999999964 4444443
No 285
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=60.56 E-value=8.2 Score=39.30 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=25.4
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc
Q 006800 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P 306 (630)
|+-+++.+++|+|||. +++.++.++... +.+++|+..
T Consensus 74 G~li~I~G~pGsGKTt-lal~la~~~~~~-------g~~vlyi~~ 110 (366)
T 1xp8_A 74 GRITEIYGPESGGKTT-LALAIVAQAQKA-------GGTCAFIDA 110 (366)
T ss_dssp TSEEEEEESTTSSHHH-HHHHHHHHHHHT-------TCCEEEEES
T ss_pred CcEEEEEcCCCCChHH-HHHHHHHHHHHC-------CCeEEEEEC
Confidence 4678999999999996 455665555432 345677654
No 286
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=60.36 E-value=3.5 Score=36.92 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.3
Q ss_pred HcCCCEEEEeCCCChHHHH
Q 006800 260 LSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~ 278 (630)
..++.++++|++|||||.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 3567899999999999965
No 287
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=60.32 E-value=8.1 Score=39.17 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=25.6
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P 306 (630)
.|+-+++.+++|+|||.. ++.++..+... +.+++++..
T Consensus 62 ~G~ii~I~G~pGsGKTtL-al~la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTL-TLQVIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHH-HHHHHHHHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHHC-------CCeEEEEeC
Confidence 356789999999999974 45555554332 445777765
No 288
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=59.95 E-value=4.8 Score=39.89 Aligned_cols=15 Identities=47% Similarity=0.476 Sum_probs=12.9
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
-++++||||+|||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 378899999999965
No 289
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=59.54 E-value=7.7 Score=39.29 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=25.6
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEccc
Q 006800 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Pt 307 (630)
|+-+++.+|+|+|||. +++.++..+... +.+++++..-
T Consensus 61 G~i~~I~GppGsGKST-Lal~la~~~~~~-------gg~VlyId~E 98 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTT-LALHAIAEAQKM-------GGVAAFIDAE 98 (356)
T ss_dssp TEEEEEEESTTSSHHH-HHHHHHHHHHHT-------TCCEEEEESS
T ss_pred CcEEEEECCCCCCHHH-HHHHHHHHHHhc-------CCeEEEEecc
Confidence 4568999999999996 455555554322 4457777653
No 290
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=59.34 E-value=4.5 Score=40.15 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.4
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.-++++||||+|||..
T Consensus 4 ~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCcCCHHHH
Confidence 3478899999999965
No 291
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=59.32 E-value=18 Score=40.71 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=52.4
Q ss_pred CCCCEEEEccchhhHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Cc-----c-------
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----A------- 531 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~-----~------- 531 (630)
.+.+++|.+++..-|.+.++.+.. .|+.++++.|+++...|.... ...|+++|. .+ .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 355899999999988887776654 589999999999987665442 378999994 33 1
Q ss_pred cCCCCCCccEEEE
Q 006800 532 RGLDIKSIKSVVN 544 (630)
Q Consensus 532 ~Gldi~~v~~VI~ 544 (630)
..+....++++|.
T Consensus 197 ~~l~lr~~~~lVl 209 (844)
T 1tf5_A 197 EQMVQRPLHFAVI 209 (844)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhcccCCCEEEE
Confidence 1366778888774
No 292
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=59.18 E-value=24 Score=36.65 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.0
Q ss_pred CCEEEEeCCCChHHHHHH
Q 006800 263 RDIIGIAKTGSGKTAAFV 280 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~ 280 (630)
+-+++++++|+|||.+..
T Consensus 101 ~vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457788999999997533
No 293
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=59.16 E-value=5 Score=40.27 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=20.1
Q ss_pred HHcCCCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 259 il~g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
+..|..+++++|||||||.. +-++..+
T Consensus 168 i~~g~~v~i~G~~GsGKTTl--l~~l~g~ 194 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY--IKSIMEF 194 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH--HHHGGGG
T ss_pred ccCCCEEEEECCCCCCHHHH--HHHHhCC
Confidence 34788999999999999963 4444433
No 294
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=58.88 E-value=4.3 Score=35.72 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=12.9
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
-++++|++|||||.+
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368999999999965
No 295
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=58.82 E-value=8.9 Score=36.12 Aligned_cols=72 Identities=19% Similarity=0.348 Sum_probs=48.6
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Cc----cc---CCCCC
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----AR---GLDIK 537 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~----~~---Gldi~ 537 (630)
..++||.+|++.-+..+++.+... ++.+..++|+.....+ ......+...|+|+|. .+ .. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 347999999999999998888764 6777777765322111 1122345678999993 22 12 47788
Q ss_pred CccEEEE
Q 006800 538 SIKSVVN 544 (630)
Q Consensus 538 ~v~~VI~ 544 (630)
.+++||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 8888875
No 296
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=58.67 E-value=2.3 Score=41.55 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=28.1
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--HcCCCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQ-CQALPII--LSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~i--l~g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
|-.+|.+.+-...+.+.|...= ..|+. ..++..+ .-.+.+++.||+|+|||.. +-++...
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL--akala~~ 67 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL--AKAVANE 67 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH--HHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH--HHHHHHH
Confidence 3467888876666666654321 11111 1122211 1124599999999999964 4444443
No 297
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=58.50 E-value=5.5 Score=36.64 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=16.3
Q ss_pred HcCCCEEEEeCCCChHHHH
Q 006800 260 LSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~ 278 (630)
+.|+-++++||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 4678899999999999964
No 298
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=58.49 E-value=11 Score=48.44 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHH----HHHHHHHcCCCEEEEeCCCChHHHHHH
Q 006800 232 FSTQLMHAISKQGYEKPTSIQC----QALPIILSGRDIIGIAKTGSGKTAAFV 280 (630)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~----~~i~~il~g~d~l~~a~TGsGKT~~~~ 280 (630)
+...+.+.+.+.++. +++.+. |....+.....+++.||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 445566777777775 555553 223445566789999999999997643
No 299
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=58.33 E-value=10 Score=35.09 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.1
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-+++.|++|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 456789999999999964
No 300
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=58.11 E-value=5.4 Score=38.21 Aligned_cols=14 Identities=36% Similarity=0.223 Sum_probs=12.5
Q ss_pred EEEEeCCCChHHHH
Q 006800 265 IIGIAKTGSGKTAA 278 (630)
Q Consensus 265 ~l~~a~TGsGKT~~ 278 (630)
++++|+||||||..
T Consensus 4 i~I~G~~GSGKSTl 17 (253)
T 2ze6_A 4 HLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 68999999999964
No 301
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=58.08 E-value=4.9 Score=36.89 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=16.9
Q ss_pred HHcCCCEEEEeCCCChHHHH
Q 006800 259 ILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 259 il~g~d~l~~a~TGsGKT~~ 278 (630)
+..|+-++++|++|||||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 45678899999999999964
No 302
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=57.89 E-value=8.8 Score=42.36 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=48.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEE
Q 006800 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (630)
Q Consensus 297 ~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~l 376 (630)
.+.++||.++|+.-|.++++.+.+. ++.+..++|+...... ...+..|+|||. .+.++.. +. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----VaerGID-Id-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMTGYT-GD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHHHCC-CC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHccCC-CC-CcEE
Confidence 4668999999999999888777764 8899999998876532 234579999994 4444433 43 7766
Q ss_pred E
Q 006800 377 V 377 (630)
Q Consensus 377 V 377 (630)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 303
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=57.57 E-value=5.7 Score=36.26 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=15.9
Q ss_pred HcCCCEEEEeCCCChHHHH
Q 006800 260 LSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~ 278 (630)
..|.-++++|++|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567789999999999964
No 304
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=57.53 E-value=3.5 Score=49.70 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=31.5
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeec
Q 006800 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT 412 (630)
+++-.++|+|||-.-+|......+...+.....++-+|+.+.-
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHR 1275 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHR 1275 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSS
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 4566789999998877777777787777777666656655543
No 305
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=57.47 E-value=7 Score=38.36 Aligned_cols=23 Identities=13% Similarity=0.054 Sum_probs=16.6
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
+.+++.||+|+|||.. .-++...
T Consensus 37 ~~lLl~GppGtGKT~l--a~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ--CELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHH--HHHHHHH
T ss_pred eEEEEECCCCCCHHHH--HHHHHHH
Confidence 4688999999999964 3344443
No 306
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=57.37 E-value=7 Score=37.25 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=14.5
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
.+.+++.||+|+|||..
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 35799999999999964
No 307
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=57.05 E-value=5.7 Score=36.81 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=41.9
Q ss_pred cccCCCHHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC----CCEEEEeC
Q 006800 195 SISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG----RDIIGIAK 270 (630)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g----~d~l~~a~ 270 (630)
.+..|+-.+|...|-..- .+. +=...+.+.|.-+++ .+..+ ...+..++.+ +.+++.+|
T Consensus 4 ~~~~m~~~~~i~~~~~~~---~~~------------~~w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GP 66 (212)
T 1tue_A 4 FGSGSNMSQWIRFRCSKI---DEG------------GDWRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGP 66 (212)
T ss_dssp --CCSCHHHHHHHHHHTS---CSC------------CCSHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESC
T ss_pred HHHhcCHHHHHHHHHHHc---cCC------------CCHHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECC
Confidence 356778888877665431 111 222355666654443 33333 4445555544 35899999
Q ss_pred CCChHHHHHHHHHHHHH
Q 006800 271 TGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 271 TGsGKT~~~~l~~l~~~ 287 (630)
.|+|||.. +..+...+
T Consensus 67 PGtGKTt~-a~ala~~l 82 (212)
T 1tue_A 67 ANTGKSYF-GMSFIHFI 82 (212)
T ss_dssp GGGCHHHH-HHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHh
Confidence 99999964 34444443
No 308
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=56.86 E-value=5 Score=36.03 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=14.7
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.+.-++++|++|||||.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp -CCEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356689999999999965
No 309
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=56.41 E-value=5.5 Score=36.25 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=14.1
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
|-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999964
No 310
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=56.11 E-value=6 Score=40.43 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=15.9
Q ss_pred HcCCCEEEEeCCCChHHHH
Q 006800 260 LSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~ 278 (630)
..|.-++++||||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567789999999999964
No 311
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=56.10 E-value=5.9 Score=35.69 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.4
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-++++|++|||||..
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 566789999999999964
No 312
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=56.05 E-value=9.1 Score=30.97 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=32.2
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCCc-EEEEeCCCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~ 505 (630)
...+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4578999999988999999999999995 888999864
No 313
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=55.79 E-value=13 Score=34.28 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=15.0
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-+.+.+|+|+|||..
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999964
No 314
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=55.35 E-value=14 Score=31.11 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=32.3
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCCc-EEEEeCCCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~ 505 (630)
...+++|||.+-..+..++..|...|+. +..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4578999999988999999999999985 888999864
No 315
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=55.16 E-value=6.3 Score=38.51 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=15.1
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
.+.+++.||+|+|||..
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 57899999999999964
No 316
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=54.91 E-value=13 Score=36.13 Aligned_cols=18 Identities=28% Similarity=0.435 Sum_probs=15.6
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-+++.|++|+|||..
T Consensus 34 ~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 567789999999999964
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=54.81 E-value=7.4 Score=34.99 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.4
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.+..++++|++|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456799999999999965
No 318
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=54.79 E-value=7.3 Score=35.47 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=18.5
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
.|.-+.+.||+|||||.. +-++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl--~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL--VRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCcEEEEECcCCCCHHHH--HHHHHhh
Confidence 567788999999999964 4444444
No 319
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=54.41 E-value=22 Score=40.03 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=53.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhh-------cCceEEEEECCCChHHHHHHHH---------cCCcEEEeChHHHHH
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKS-------HGIRVSAVYGGMSKLDQFKELK---------AGCEIVIATPGRLID 361 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~-------~~~~~~~~~gg~~~~~~~~~l~---------~~~dIiv~Tp~~L~~ 361 (630)
+..+||.+|++.-+..++..+.+.+.. .++.+..++|+.+..++...+. +...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 567999999999999998888764322 3788899999988766543332 2358999994
Q ss_pred HHHccccccCceeEEEe
Q 006800 362 MLKMKALTMSRVTYLVL 378 (630)
Q Consensus 362 ~l~~~~~~l~~i~~lVv 378 (630)
.+.. .+.+..+.+||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 3333 345677876664
No 320
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=54.33 E-value=12 Score=36.99 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=18.5
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhc
Q 006800 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
|.-+.+.+|+|+|||.. +..+..++.
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 45688899999999954 445555443
No 321
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=54.29 E-value=8.9 Score=36.70 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=19.8
Q ss_pred HHcCCCEEEEeCCCChHHHHHHHHHHHH
Q 006800 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVH 286 (630)
Q Consensus 259 il~g~d~l~~a~TGsGKT~~~~l~~l~~ 286 (630)
.+.|+.+++.|++|+|||.+ .-++..
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl--~~~La~ 70 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTV--GKIMAR 70 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHH--HHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH--HHHHHH
Confidence 34599999999999999965 344444
No 322
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=54.23 E-value=6.7 Score=39.11 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=13.3
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
-++++||||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999964
No 323
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=54.10 E-value=58 Score=33.33 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=21.9
Q ss_pred HHHHHHHHHHH---cCCCEEEEeCCCChHHHH
Q 006800 250 SIQCQALPIIL---SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 250 ~~Q~~~i~~il---~g~d~l~~a~TGsGKT~~ 278 (630)
..=..+|..++ .|+.+.+.+++|+|||..
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtL 190 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTML 190 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHH
Confidence 33345555554 789999999999999965
No 324
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=53.83 E-value=60 Score=34.10 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=47.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---HHHHH-cCCcEEEeChHHHHHHHHccccccCcee
Q 006800 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELK-AGCEIVIATPGRLIDMLKMKALTMSRVT 374 (630)
Q Consensus 299 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~i~ 374 (630)
...+|++..+.-+..+.+.+.+. +.++..++|+.+..+. ...+. +..+|+|||+..+.. .+++..+.
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~ 418 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLH 418 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEE
T ss_pred CCeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCc
Confidence 33445555565555555444443 5688888888775443 22333 346899999865544 45678899
Q ss_pred EEEecchh
Q 006800 375 YLVLDEAD 382 (630)
Q Consensus 375 ~lVvDEah 382 (630)
+||+..+.
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99987665
No 325
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=53.51 E-value=8.7 Score=35.74 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=19.0
Q ss_pred HcCCCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
..|+-+.++||+|+|||.. +-++..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTL--l~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL--IKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 4678899999999999964 4444443
No 326
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=53.34 E-value=7.5 Score=38.37 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=15.7
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
....+++.|++|+|||.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 457899999999999964
No 327
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=53.23 E-value=5.8 Score=35.55 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.1
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-++++|++|||||.+
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 455689999999999965
No 328
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=53.20 E-value=15 Score=33.69 Aligned_cols=18 Identities=28% Similarity=0.130 Sum_probs=15.0
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-+++.+++|+|||..
T Consensus 19 ~G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTL 36 (220)
T ss_dssp TTSEEEEECSTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 346789999999999964
No 329
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=52.83 E-value=8.7 Score=34.57 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=17.0
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 263 RDIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
+-+.+.||+|+|||.. +-++..++
T Consensus 2 ~ii~l~GpsGaGKsTl--~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL--LKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHH--HHHHHHHC
T ss_pred CEEEEECCCCCCHHHH--HHHHHhhC
Confidence 4578999999999964 44444443
No 330
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=52.71 E-value=9.6 Score=33.10 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=16.3
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
-.++.+|+|+|||.. +-++..++
T Consensus 25 ~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHH
Confidence 368899999999964 44444443
No 331
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=52.69 E-value=82 Score=30.67 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.7
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
++-+++.+++|+|||..
T Consensus 98 ~~vi~i~G~~G~GKTT~ 114 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTT 114 (297)
T ss_dssp SEEEEEECSSCSSTTHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44577889999999965
No 332
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=52.44 E-value=9.4 Score=34.03 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=16.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
-.++.+++|+|||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 468999999999964 44555554
No 333
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=51.96 E-value=5.8 Score=35.30 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=14.8
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-+.++||+|||||..
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 455678999999999964
No 334
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=51.44 E-value=15 Score=34.44 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=14.2
Q ss_pred CEEEEeCCCChHHHHHH
Q 006800 264 DIIGIAKTGSGKTAAFV 280 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~ 280 (630)
.+++.++.|+|||.+.+
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58899999999997643
No 335
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=51.38 E-value=8.1 Score=38.83 Aligned_cols=16 Identities=38% Similarity=0.316 Sum_probs=13.5
Q ss_pred CEEEEeCCCChHHHHH
Q 006800 264 DIIGIAKTGSGKTAAF 279 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~ 279 (630)
-++++||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999653
No 336
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=51.27 E-value=9.9 Score=34.90 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=20.0
Q ss_pred HHHcCCCEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 258 ~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
.+..|+-+.+.+|+|+|||.. +-++..++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL--l~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV--VRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH--HHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 566788899999999999954 44555544
No 337
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=51.24 E-value=8.6 Score=33.70 Aligned_cols=15 Identities=20% Similarity=-0.106 Sum_probs=13.0
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
-++++|+.|||||.+
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999965
No 338
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=50.84 E-value=9.2 Score=35.74 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=19.1
Q ss_pred HHHcCCCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 258 ~il~g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
.+-.|+-++++||.|+|||.. +-++...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTL--lk~L~g~ 39 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSL--IQALLKT 39 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHH--HHHHhcc
Confidence 355788899999999999964 4444443
No 339
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=56.18 E-value=3.3 Score=36.92 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=46.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH---HHHHc-CCcEEEeChHHHHHHHHccccccCce
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF---KELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
+.++||.|+++..|..++..+... ++.+..++|+.+..+.. ..+.. ...|+|||. .+.. .+++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAAR-GIDIPDV 99 (170)
Confidence 456899999999998887777665 77888888876544332 22222 467999993 2222 3345566
Q ss_pred eEEEe
Q 006800 374 TYLVL 378 (630)
Q Consensus 374 ~~lVv 378 (630)
.+||.
T Consensus 100 ~~Vi~ 104 (170)
T 2yjt_D 100 SHVFN 104 (170)
Confidence 66664
No 340
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=50.63 E-value=9.3 Score=34.82 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=15.4
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-++++|++|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467799999999999964
No 341
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=50.61 E-value=28 Score=38.47 Aligned_cols=74 Identities=18% Similarity=0.328 Sum_probs=53.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChH---HHHHHHHc---CCcEEEeChHHHHHHHHccccccCc
Q 006800 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL---DQFKELKA---GCEIVIATPGRLIDMLKMKALTMSR 372 (630)
Q Consensus 299 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~---~~dIiv~Tp~~L~~~l~~~~~~l~~ 372 (630)
+..+|+++|+.-+.+++..+.+. ++.+..++|+.... .....+.. ..+|+|||- .+.. .+++ .
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~-GlDi-~ 389 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGM-GLNL-S 389 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGS-SCCC-C
T ss_pred CCCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHC-CcCc-C
Confidence 33467799998888887777764 78999999998866 44455553 379999994 4443 3456 7
Q ss_pred eeEEEecchhh
Q 006800 373 VTYLVLDEADR 383 (630)
Q Consensus 373 i~~lVvDEah~ 383 (630)
+.+||.-.+.+
T Consensus 390 v~~VI~~~~~k 400 (677)
T 3rc3_A 390 IRRIIFYSLIK 400 (677)
T ss_dssp BSEEEESCSBC
T ss_pred ccEEEECCccc
Confidence 88888877755
No 342
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=50.51 E-value=9 Score=33.87 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=13.0
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
-++++|++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 378999999999965
No 343
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=50.39 E-value=8.2 Score=40.55 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=14.9
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
++.+++.||+|+|||..
T Consensus 63 ~~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTAL 79 (456)
T ss_dssp TCEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 36899999999999965
No 344
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=50.20 E-value=23 Score=39.98 Aligned_cols=70 Identities=7% Similarity=-0.015 Sum_probs=50.9
Q ss_pred CCCCEEEEccchhhHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Cc-----ccC-----
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARG----- 533 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~-----~~G----- 533 (630)
.+.+++|.++|..-|.+++..+.. .|+.++++.|+++...|.... ...|+|+|. .+ ..+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 355899999999988877766644 589999999999986554433 378999994 32 122
Q ss_pred --CCCCCccEEEE
Q 006800 534 --LDIKSIKSVVN 544 (630)
Q Consensus 534 --ldi~~v~~VI~ 544 (630)
+....+.++|.
T Consensus 188 ~~~~~~~l~~lVl 200 (853)
T 2fsf_A 188 EERVQRKLHYALV 200 (853)
T ss_dssp GGCCCCSCCEEEE
T ss_pred hHhcccCCcEEEE
Confidence 45677777774
No 345
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=50.19 E-value=21 Score=40.48 Aligned_cols=71 Identities=13% Similarity=0.293 Sum_probs=47.4
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Ccc----cC-C-CCCC
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~~----~G-l-di~~ 538 (630)
.+++||.||++.-+..+...+... ++.+..+||+.+...+...+. +...|+|+|. .+. .+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999888877777654 899999999987655432221 2578999993 222 22 3 5666
Q ss_pred ccEEEE
Q 006800 539 IKSVVN 544 (630)
Q Consensus 539 v~~VI~ 544 (630)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788875
No 346
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=50.15 E-value=9.6 Score=38.74 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=17.8
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
...+++.||+|+|||.+ .-++...
T Consensus 72 ~~~ill~Gp~GtGKT~l--a~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM--AQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCCEEEECCCCCCHHHH--HHHHHHH
Confidence 46899999999999964 3344443
No 347
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=49.71 E-value=8.8 Score=39.49 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=12.4
Q ss_pred EEEEeCCCChHHHH
Q 006800 265 IIGIAKTGSGKTAA 278 (630)
Q Consensus 265 ~l~~a~TGsGKT~~ 278 (630)
++++||||+|||..
T Consensus 5 i~i~GptgsGKttl 18 (409)
T 3eph_A 5 IVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEECSSSSHHHH
T ss_pred EEEECcchhhHHHH
Confidence 68899999999965
No 348
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=49.54 E-value=11 Score=33.82 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=16.0
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
.+.+.||+|+|||.. +-++..++
T Consensus 2 ~i~l~G~nGsGKTTL--l~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL--VKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHh
Confidence 467899999999953 44444443
No 349
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=49.52 E-value=14 Score=31.87 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=32.1
Q ss_pred CCCCEEEEccch--hhHHHHHHHHHhCCCcEEEEeCCCC
Q 006800 469 DDGDVLVFASKK--TTVDEIESQLAQKGFKAAALHGDKD 505 (630)
Q Consensus 469 ~~~~iLIF~~s~--~~~~~l~~~L~~~~~~~~~ihg~~~ 505 (630)
...+++|||.+- ..+..++..|...|+.+..+.|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 456899999987 5889999999999999999999864
No 350
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=49.47 E-value=10 Score=36.69 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=17.1
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
+.+++.+|+|+|||.. +-++...
T Consensus 74 ~gvll~Gp~GtGKTtl--~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL--ARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CeEEEECCCcChHHHH--HHHHHHH
Confidence 4599999999999954 4445544
No 351
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=49.08 E-value=11 Score=33.76 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=16.4
Q ss_pred HHcCCCEEEEeCCCChHHHH
Q 006800 259 ILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 259 il~g~d~l~~a~TGsGKT~~ 278 (630)
+..+.-++++|++|||||.+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHH
T ss_pred CcCCCEEEEECCCCCCHHHH
Confidence 34567799999999999965
No 352
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=49.05 E-value=10 Score=45.80 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=31.3
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEee
Q 006800 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SA 411 (630)
+++-.++|+||+=.-+|...+..+...+..+..++-+|+.|.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaH 611 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAH 611 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECS
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 567789999999988888777777777776655655555543
No 353
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=48.99 E-value=9 Score=35.23 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=17.9
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
.|.-+.+.||+|||||.. +-++..++
T Consensus 21 ~g~~v~I~G~sGsGKSTl--~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL--SNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHH--HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH--HHHHHHHH
Confidence 345678999999999953 44444443
No 354
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=48.90 E-value=13 Score=30.04 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=31.8
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCCc-EEEEeCCCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~ 505 (630)
...+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3568999999988899999999999995 888888853
No 355
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=48.78 E-value=14 Score=39.32 Aligned_cols=71 Identities=14% Similarity=0.352 Sum_probs=49.5
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Ccc----cC-C-CCCC
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~~----~G-l-di~~ 538 (630)
.+++||.||++.-+..+...+... ++.+..++|+.+...+...+. +...|+|+|. .+. .+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999998888777776654 899999999986544322221 1477999993 332 22 3 5667
Q ss_pred ccEEEE
Q 006800 539 IKSVVN 544 (630)
Q Consensus 539 v~~VI~ 544 (630)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788775
No 356
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=48.76 E-value=8.8 Score=33.94 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.5
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
|.-++++|++|||||..
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45689999999999964
No 357
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=48.70 E-value=27 Score=45.60 Aligned_cols=55 Identities=11% Similarity=0.246 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHH-HHH---HHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhc
Q 006800 232 FSTQLMHAISKQGYEKPTSIQC-QAL---PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~-~~i---~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
|...+.+.+.+.|+. +.+.+. .++ ..+.....++++||||+|||.+ +.+|...+.
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~--~~~L~~al~ 931 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTS--WEVYLEAIE 931 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHH--HHHHHHHHT
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHH--HHHHHHHHH
Confidence 445566777777875 555443 333 3344556789999999999976 445555543
No 358
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=48.59 E-value=11 Score=34.56 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=13.4
Q ss_pred CEEEEeCCCChHHHHH
Q 006800 264 DIIGIAKTGSGKTAAF 279 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~ 279 (630)
-.++.|+.|||||...
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3689999999999754
No 359
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=48.02 E-value=18 Score=38.56 Aligned_cols=71 Identities=13% Similarity=0.293 Sum_probs=47.8
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Ccc----cC-C-CCCC
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~~----~G-l-di~~ 538 (630)
.+++||.||++.-+..+...+... ++.+..+||+.+...+...+. ....|+|+|. .+. .+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999888887777664 899999999986654432221 1377999993 332 22 4 6777
Q ss_pred ccEEEE
Q 006800 539 IKSVVN 544 (630)
Q Consensus 539 v~~VI~ 544 (630)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888886
No 360
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=47.53 E-value=13 Score=36.76 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=18.4
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
.|.-+.+.||+|+|||.. +..+..++
T Consensus 99 ~g~vi~lvG~nGsGKTTl--l~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS--LGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHH--HHHHHHHH
Confidence 455678999999999964 44444443
No 361
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=47.16 E-value=21 Score=30.71 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=31.3
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCC-cEEEEeCCCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQKGF-KAAALHGDKD 505 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~-~~~~ihg~~~ 505 (630)
...+++|||.+-..+...+..|...|+ .+..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999998888999999999999 5899999874
No 362
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=47.11 E-value=15 Score=37.19 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=18.7
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 56667888764 6667999999965
No 363
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=47.03 E-value=14 Score=33.50 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=25.6
Q ss_pred cCceeEEEecchhhh--hcCCcHHHHHHHHhhcCCCCcEEEEeecc
Q 006800 370 MSRVTYLVLDEADRM--FDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (630)
Q Consensus 370 l~~i~~lVvDEah~~--~~~~~~~~v~~i~~~l~~~~q~l~~SAT~ 413 (630)
....+++|+||+..| .+..|...+..++.. ...+|+-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 456789999998776 334466666666653 22345445564
No 364
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=46.85 E-value=21 Score=31.81 Aligned_cols=15 Identities=27% Similarity=0.096 Sum_probs=12.4
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
-+.+.++.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999964
No 365
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=46.75 E-value=15 Score=40.61 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=46.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHc-CCcEEEeChHHHHHHHHccccccCceeEE
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i~~l 376 (630)
+.++||+||++.-|..++..+.+. ++++..++|. .+......+.. ..+|+|||- .+..+ +.+. +.+|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e~G-IDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISEMG-ANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGGTT-CCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhhcc-eeeC-CcEE
Confidence 567999999999999887777665 7888888874 34333444443 478999993 44333 3455 6665
Q ss_pred E
Q 006800 377 V 377 (630)
Q Consensus 377 V 377 (630)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 366
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=46.69 E-value=13 Score=37.22 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=17.4
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
..+++.||+|+|||.. +-++...
T Consensus 52 ~~~ll~Gp~G~GKTTL--a~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL--AHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHH--HHHHHHH
T ss_pred CeEEEECCCCCcHHHH--HHHHHHH
Confidence 6799999999999964 4444443
No 367
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=46.66 E-value=23 Score=37.72 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.8
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.+.++++.+.||||||.+
T Consensus 166 ~~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG 183 (512)
T ss_dssp GSCSEEEECCTTSSHHHH
T ss_pred cCceEEEECCCCCCHHHH
Confidence 457999999999999964
No 368
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=46.43 E-value=16 Score=38.78 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=25.7
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P 306 (630)
.|.-+++.|++|+|||. +++.+..++..+ .+.+++++.-
T Consensus 241 ~G~l~li~G~pG~GKT~-lal~~a~~~a~~------~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMST-FVRQQALQWGTA------MGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHH-HHHHHHHHHTTT------SCCCEEEEES
T ss_pred CCeEEEEeecCCCCchH-HHHHHHHHHHHh------cCCcEEEEec
Confidence 45678999999999996 455555555332 1445777653
No 369
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=46.33 E-value=13 Score=36.42 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.9
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
..+++.||+|+|||.+
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3689999999999964
No 370
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=46.32 E-value=10 Score=38.37 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.0
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
.+.+++.||+|+|||..
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999964
No 371
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=46.28 E-value=10 Score=34.52 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.2
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-+++.|++|||||..
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466788999999999964
No 372
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=46.26 E-value=13 Score=36.73 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=19.8
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
.|.-+.+.+|+|+|||. ++-+|..++
T Consensus 125 ~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 67888999999999995 344555554
No 373
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=46.12 E-value=12 Score=33.67 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.3
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.-+++++++|+|||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3468899999999964
No 374
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=45.89 E-value=33 Score=39.65 Aligned_cols=71 Identities=13% Similarity=0.293 Sum_probs=45.9
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Ccc----cC-C-CCCC
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~~----~G-l-di~~ 538 (630)
.+++||.+|++.-+..+...|... ++.+..+||+.+...+...+. +...|+|+|. .+. ++ + .+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 568999999998888777776654 899999999986554322221 1367999993 322 22 3 5566
Q ss_pred ccEEEE
Q 006800 539 IKSVVN 544 (630)
Q Consensus 539 v~~VI~ 544 (630)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777775
No 375
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=45.87 E-value=15 Score=32.91 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=14.9
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.+.-++++|++|||||.+
T Consensus 12 ~~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 345689999999999965
No 376
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=45.86 E-value=15 Score=36.39 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=12.4
Q ss_pred EEEEeCCCChHHHH
Q 006800 265 IIGIAKTGSGKTAA 278 (630)
Q Consensus 265 ~l~~a~TGsGKT~~ 278 (630)
+++.|+.|+|||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 68899999999964
No 377
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=45.75 E-value=45 Score=26.87 Aligned_cols=49 Identities=8% Similarity=0.099 Sum_probs=36.5
Q ss_pred CCCCCCEEEEcc------chhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Q 006800 467 MIDDGDVLVFAS------KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQK 515 (630)
Q Consensus 467 ~~~~~~iLIF~~------s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~ 515 (630)
.....+++||.. .--.|.++..+|...++.+..+.=..+...+..+...
T Consensus 14 ~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 14 LVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp HHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred HHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 335679999987 4789999999999999888877655555555555443
No 378
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=45.69 E-value=12 Score=34.13 Aligned_cols=16 Identities=31% Similarity=0.572 Sum_probs=14.0
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.-++++|++|||||.+
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999964
No 379
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=45.50 E-value=16 Score=38.14 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=45.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHc-CCcEEEeChHHHHHHHHccccccCceeEE
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i~~l 376 (630)
+.++||.|||+.-|.+++..+.+. ++.+..+++... ......+.. ...|+|||- .+..+ +.+.. .+|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~~G-iDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISEMG-ANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGGSS-CCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHHhC-cCCCC-CEE
Confidence 446999999999999888777664 788887777543 333333333 479999994 44433 34555 555
Q ss_pred E
Q 006800 377 V 377 (630)
Q Consensus 377 V 377 (630)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 4
No 380
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=45.49 E-value=9.5 Score=34.61 Aligned_cols=18 Identities=33% Similarity=0.246 Sum_probs=15.3
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.+.-++++|+.|||||.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456789999999999965
No 381
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=45.46 E-value=12 Score=33.42 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.2
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
+.-++++|++|||||.+
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34589999999999965
No 382
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=45.38 E-value=12 Score=32.82 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=14.4
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
+.+++.++.|||||.+
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5789999999999975
No 383
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=45.34 E-value=16 Score=36.37 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=18.4
Q ss_pred HHHHHHcCCC--EEEEeCCCChHHHH
Q 006800 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d--~l~~a~TGsGKT~~ 278 (630)
.+..++.|.+ ++.-|.||||||.+
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 4556678876 46678999999965
No 384
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=45.15 E-value=18 Score=30.79 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=32.8
Q ss_pred CCCCCEEEEccchhhHHHHHHHHHhCCC-cEEEEeCCCC
Q 006800 468 IDDGDVLVFASKKTTVDEIESQLAQKGF-KAAALHGDKD 505 (630)
Q Consensus 468 ~~~~~iLIF~~s~~~~~~l~~~L~~~~~-~~~~ihg~~~ 505 (630)
....+++|||.+-..+...+..|...|+ .+..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 3467899999999999999999999999 5889999863
No 385
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=45.13 E-value=6.2 Score=37.88 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.5
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
.+.+++.||+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35799999999999964
No 386
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=44.99 E-value=16 Score=37.62 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=18.1
Q ss_pred HHHHHHcCCC--EEEEeCCCChHHHH
Q 006800 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d--~l~~a~TGsGKT~~ 278 (630)
.+..++.|.+ ++.-|.||||||.+
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeE
Confidence 4556678876 46677999999966
No 387
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=44.87 E-value=1.5e+02 Score=29.44 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=13.2
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
.+++++++|+|||..
T Consensus 81 ~I~i~G~~G~GKSTl 95 (355)
T 3p32_A 81 RVGITGVPGVGKSTA 95 (355)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999964
No 388
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=44.78 E-value=4.3 Score=45.28 Aligned_cols=70 Identities=16% Similarity=0.340 Sum_probs=46.8
Q ss_pred CCEEEEccchhhHHHH-HHHHHhCC---CcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Ccc-----------cCC
Q 006800 471 GDVLVFASKKTTVDEI-ESQLAQKG---FKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA-----------RGL 534 (630)
Q Consensus 471 ~~iLIF~~s~~~~~~l-~~~L~~~~---~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~~-----------~Gl 534 (630)
+++||.+|++.-+..+ ...|.... +.+..++|+.+...+...+. +...|||+|. .+. ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999888887 77776653 89999999986544332222 5688999993 333 235
Q ss_pred CCCCccEEEE
Q 006800 535 DIKSIKSVVN 544 (630)
Q Consensus 535 di~~v~~VI~ 544 (630)
.+..+++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6677888885
No 389
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=44.70 E-value=17 Score=33.41 Aligned_cols=30 Identities=20% Similarity=0.039 Sum_probs=21.4
Q ss_pred CcHHHHHHHHHHHcCCCEEEEeCCCChHHHH
Q 006800 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 248 ~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~ 278 (630)
.++.+... ..+..|.-++++|++|||||.+
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 34555555 3345677789999999999964
No 390
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=44.64 E-value=11 Score=33.76 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=14.2
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
+.-+++.|++|||||.+
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34588999999999975
No 391
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.61 E-value=17 Score=37.46 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=19.1
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyT 157 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFT 157 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceE
Confidence 56777889875 5667999999966
No 392
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=44.42 E-value=15 Score=36.89 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=18.0
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 44556788765 6677999999965
No 393
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=44.12 E-value=12 Score=34.98 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.1
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.+..+++.|++|||||.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345799999999999965
No 394
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=44.04 E-value=14 Score=33.72 Aligned_cols=24 Identities=25% Similarity=0.052 Sum_probs=16.9
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
|.-+.+.|++|||||.. +-++..+
T Consensus 6 ~~~i~i~G~~GsGKSTl--~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL--AQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHH--HHHHHHH
T ss_pred cEEEEEECCCCCCHHHH--HHHHHHH
Confidence 44578899999999964 4444444
No 395
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=44.02 E-value=18 Score=36.46 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=18.2
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeE
Confidence 45567788764 6678999999965
No 396
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=43.84 E-value=30 Score=37.88 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=46.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHc-CCcEEEeChHHHHHHHHccccccCceeEE
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i~~l 376 (630)
+.++||.|+|+.-|..+++.+.+. ++.+..++|. .....+..+.. ...|+|||. .+.++. .+. +.+|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~rGi-Di~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISEMGA-NFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGGTTC-CCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHHcCc-ccC-ceEE
Confidence 456999999999999888887765 7888888874 44444444444 478999994 444433 343 6655
Q ss_pred E
Q 006800 377 V 377 (630)
Q Consensus 377 V 377 (630)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 397
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=43.65 E-value=13 Score=33.07 Aligned_cols=15 Identities=27% Similarity=0.178 Sum_probs=13.0
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
-+++.|++|||||.+
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999965
No 398
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=43.52 E-value=16 Score=33.85 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=14.5
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
...+++.|++|||||.+
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQ 21 (222)
T ss_dssp SCCEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35689999999999975
No 399
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=43.48 E-value=15 Score=32.52 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=13.8
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
+.+++++++|||||.+
T Consensus 5 ~~i~i~G~~GsGKsTl 20 (175)
T 1via_A 5 KNIVFIGFMGSGKSTL 20 (175)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 3689999999999965
No 400
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=43.48 E-value=18 Score=36.70 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=18.1
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 45567788764 5677999999965
No 401
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=43.44 E-value=18 Score=36.47 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=18.6
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 45667788775 6667999999965
No 402
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=43.32 E-value=11 Score=34.33 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=15.0
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.+.-+++.|+.|||||.+
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 455689999999999965
No 403
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=43.28 E-value=18 Score=36.13 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 254 QALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 254 ~~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
..+..++.|.++ +.-|.||||||.+
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 356677888774 6678999999965
No 404
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=43.26 E-value=9.2 Score=37.39 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=13.7
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.-++++|++|||||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3589999999999964
No 405
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=43.17 E-value=1.7e+02 Score=29.57 Aligned_cols=90 Identities=10% Similarity=0.099 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCCEEEEeCCCC-hHHHHHHHHHHHHHhcCCcccccCCC-eEEEEcccHHHHHHHHHHHHHHhhhcCceEE
Q 006800 253 CQALPIILSGRDIIGIAKTGS-GKTAAFVLPMIVHIMDQPELQKEEGP-IGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (630)
Q Consensus 253 ~~~i~~il~g~d~l~~a~TGs-GKT~~~~l~~l~~~~~~~~~~~~~~~-~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~ 330 (630)
...+...++++.+++.|.||. |..++ .++... |+ .++++.-...-..++...+.......+..+.
T Consensus 26 ~~~~~~~~~~k~vLVTGatG~IG~~l~------~~L~~~-------g~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~v~ 92 (399)
T 3nzo_A 26 EKELQSVVSQSRFLVLGGAGSIGQAVT------KEIFKR-------NPQKLHVVDISENNMVELVRDIRSSFGYINGDFQ 92 (399)
T ss_dssp HHHHHHHHHTCEEEEETTTSHHHHHHH------HHHHTT-------CCSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEE
T ss_pred HHHHHHHhCCCEEEEEcCChHHHHHHH------HHHHHC-------CCCEEEEEECCcchHHHHHHHHHHhcCCCCCcEE
Confidence 344566678999999999986 66544 333222 53 5666665555555555555554332235667
Q ss_pred EEECCCChHHHHHHHH--cCCcEEEeC
Q 006800 331 AVYGGMSKLDQFKELK--AGCEIVIAT 355 (630)
Q Consensus 331 ~~~gg~~~~~~~~~l~--~~~dIiv~T 355 (630)
.+.+..........+. .++|+||-.
T Consensus 93 ~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 119 (399)
T 3nzo_A 93 TFALDIGSIEYDAFIKADGQYDYVLNL 119 (399)
T ss_dssp EECCCTTSHHHHHHHHHCCCCSEEEEC
T ss_pred EEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 7777776665555544 468888754
No 406
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=43.15 E-value=19 Score=36.44 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=18.5
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 45667788775 5567999999965
No 407
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=43.03 E-value=18 Score=36.63 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=18.2
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 45556788764 6678999999965
No 408
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=42.82 E-value=14 Score=37.47 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.4
Q ss_pred CEEEEeCCCChHHHHH
Q 006800 264 DIIGIAKTGSGKTAAF 279 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~ 279 (630)
-.+++||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999653
No 409
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=42.79 E-value=57 Score=31.68 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=50.7
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Ccc-----cCCCCCCc
Q 006800 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA-----RGLDIKSI 539 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~~-----~Gldi~~v 539 (630)
..++||.+|++.-+..+++.+... +..+..++|+.+....... +. ...|+|+|. .+. ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 568999999999999888888753 5789999999887654332 22 378999993 221 23456667
Q ss_pred cEEEE
Q 006800 540 KSVVN 544 (630)
Q Consensus 540 ~~VI~ 544 (630)
+.||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77775
No 410
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=42.74 E-value=18 Score=36.31 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=18.1
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-+.||||||.+
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEe
Confidence 45566788775 6667999999965
No 411
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=42.72 E-value=15 Score=32.94 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.3
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.+.-++++|++|||||.+
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456789999999999965
No 412
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=42.71 E-value=19 Score=36.32 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=18.0
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEE
Confidence 44556788764 6677999999965
No 413
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=42.68 E-value=28 Score=28.12 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=31.8
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 505 (630)
...+++|||.+-..+...+..|...|+....+.|++.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4568999999999999999999999986688889864
No 414
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=42.65 E-value=16 Score=33.48 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=16.8
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhc
Q 006800 264 DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
-.++.||+|+|||.+ +-++..++.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 468899999999964 444444443
No 415
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=42.62 E-value=16 Score=36.98 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=18.3
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
.|.-+.+++++|+|||.. +..+..++
T Consensus 156 ~g~vi~lvG~nGsGKTTl--l~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTS--LGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHH--HHHHHhhc
Confidence 345678999999999964 44444444
No 416
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=42.48 E-value=41 Score=33.32 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=17.5
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhc
Q 006800 264 DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
-+.+.|++|||||.. +-++..++.
T Consensus 94 iigI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhc
Confidence 378899999999954 455555554
No 417
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=42.45 E-value=15 Score=32.81 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.2
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
-++++|++|||||.+
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 418
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=42.33 E-value=12 Score=37.42 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=18.5
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
...++++.||+|+|||.. +-++...+
T Consensus 44 ~~~~vLl~G~~GtGKT~l--a~~la~~~ 69 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTA--VRALAALL 69 (350)
T ss_dssp GGCCEEEECCGGGCTTHH--HHHHHHHS
T ss_pred CCceEEEECCCCccHHHH--HHHHHHhC
Confidence 346799999999999964 33444443
No 419
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=42.28 E-value=34 Score=27.80 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=39.2
Q ss_pred CCCCCEEEEc------cchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEE
Q 006800 468 IDDGDVLVFA------SKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524 (630)
Q Consensus 468 ~~~~~iLIF~------~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VL 524 (630)
....+++||. +.--.|..+...|...|+.+..+.=..+...+..+...-....++.+
T Consensus 13 i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~i 75 (111)
T 3zyw_A 13 THAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQL 75 (111)
T ss_dssp HTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred HhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEE
Confidence 3567999999 46778999999999999888877655566555555443222334443
No 420
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=42.24 E-value=18 Score=36.55 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=17.9
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceE
Confidence 34556788764 6677999999965
No 421
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=42.22 E-value=1.9e+02 Score=25.82 Aligned_cols=127 Identities=11% Similarity=0.003 Sum_probs=47.9
Q ss_pred HcCCCEEEEeCCCChHHHHHHHHHHHHHhcCC-----cccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCc-eEEEEE
Q 006800 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP-----ELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI-RVSAVY 333 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~-----~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~-~~~~~~ 333 (630)
+.|..+-+....|.|=|..+.+|+........ ......+.++|||-........+...+..+ |+ .+..+
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~----g~~~v~~a- 92 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM----GVSEVEQC- 92 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT----TCSEEEEE-
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeeeee-
Confidence 45556677778899999888888643321111 011123567888888776665554444443 54 33222
Q ss_pred CCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc--------ccccCceeEEEecchhhhhcCCcHHHHHHHHhh---cCC
Q 006800 334 GGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--------ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ---IRP 402 (630)
Q Consensus 334 gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~--------~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~---l~~ 402 (630)
.+....+..+... ...-..+++||+|= .|.++.-...+..+... ..+
T Consensus 93 --------------------~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~el~~~lr~~~~~~~~ 150 (206)
T 3mm4_A 93 --------------------DSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYEATREIRKVEKSYGV 150 (206)
T ss_dssp --------------------SSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHHHHHHHHHHHHTTTC
T ss_pred --------------------CCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHHHHHHHHhhhhhcCC
Confidence 2333333333321 11123578888882 23333323333444332 356
Q ss_pred CCcEEEEeecc
Q 006800 403 DRQTLLFSATM 413 (630)
Q Consensus 403 ~~q~l~~SAT~ 413 (630)
...+|++|+..
T Consensus 151 ~~piI~ls~~~ 161 (206)
T 3mm4_A 151 RTPIIAVSGHD 161 (206)
T ss_dssp CCCEEEEESSC
T ss_pred CCcEEEEECCC
Confidence 78899999976
No 422
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=42.04 E-value=15 Score=34.24 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.5
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
+.-++++|++|||||.+
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35689999999999965
No 423
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=41.95 E-value=11 Score=35.35 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=11.4
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|+-+.+.||+|+|||..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999964
No 424
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=41.87 E-value=15 Score=33.95 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=13.0
Q ss_pred EEEEeCCCChHHHHH
Q 006800 265 IIGIAKTGSGKTAAF 279 (630)
Q Consensus 265 ~l~~a~TGsGKT~~~ 279 (630)
+++.||+||||+.+.
T Consensus 3 Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999763
No 425
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=41.78 E-value=15 Score=33.83 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.4
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
+..+++.|++|||||.+
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999965
No 426
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=41.76 E-value=18 Score=36.54 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 45567788764 6677999999965
No 427
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=41.62 E-value=22 Score=38.85 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=22.0
Q ss_pred HHHHcCCCEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 257 ~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
..+..|+.+++.+|+|+|||.. +-++..++
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl--ar~ia~~l 84 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML--GQAMAELL 84 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH--HHHHHHTS
T ss_pred ccccCCCEEEEEeCCCCCHHHH--HHHHhccC
Confidence 3456789999999999999964 34444443
No 428
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=41.48 E-value=20 Score=36.39 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=18.2
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 45567788764 6667999999965
No 429
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=41.33 E-value=15 Score=33.72 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=13.0
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
.+++.|+.|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999965
No 430
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=41.26 E-value=31 Score=37.19 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=18.3
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHH
Q 006800 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
..++++.|.||||||.+ +-.++..+
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sL 238 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSI 238 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHH
Confidence 46899999999999975 33334433
No 431
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=41.16 E-value=18 Score=32.17 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.8
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.-++++|++|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4589999999999965
No 432
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=41.05 E-value=19 Score=36.36 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=18.2
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 45567788764 6667999999965
No 433
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=41.02 E-value=18 Score=36.02 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.4
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.++-+++++++|+|||.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTS 121 (320)
T ss_dssp SCEEEEEESSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345678889999999965
No 434
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=40.76 E-value=22 Score=27.02 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=29.1
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCCc-EEEEeCCCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~ 505 (630)
...+++|||.+-..+...+..|...|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4568999999988899999999999985 5555 7653
No 435
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=40.67 E-value=38 Score=38.39 Aligned_cols=70 Identities=7% Similarity=0.042 Sum_probs=51.6
Q ss_pred CCCCEEEEccchhhHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Cc-----c-------
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----A------- 531 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~-----~------- 531 (630)
.+.+++|.+++..-|.+.+..+.. .|+.++++.|+++...|.... ...|+++|. .+ .
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~ 224 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSL 224 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccH
Confidence 345899999999988777776654 589999999999987665543 378999994 32 1
Q ss_pred cCCCCCCccEEEE
Q 006800 532 RGLDIKSIKSVVN 544 (630)
Q Consensus 532 ~Gldi~~v~~VI~ 544 (630)
..+....++++|.
T Consensus 225 ~~l~lr~l~~lIV 237 (922)
T 1nkt_A 225 DDLVQRGHHYAIV 237 (922)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhccCCCCEEEE
Confidence 1356677777774
No 436
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=40.55 E-value=19 Score=36.64 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=17.9
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 44556788764 6677999999965
No 437
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=40.28 E-value=18 Score=36.73 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=18.7
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 56677888764 5667999999965
No 438
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=40.28 E-value=16 Score=33.82 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.6
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.-+.+.|++|||||.+
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578999999999964
No 439
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=40.27 E-value=73 Score=28.07 Aligned_cols=81 Identities=10% Similarity=0.283 Sum_probs=57.8
Q ss_pred cccHHHHHHhccCC-CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q 006800 454 AEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (630)
Q Consensus 454 ~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~ 532 (630)
..-..++...+... ...+.+.|.|++...+..+...|...|+++..+.++... | ...|.|.|--.+.
T Consensus 44 ~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~---------~---~~~v~v~t~~~~K 111 (174)
T 3dmn_A 44 EAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQR---------L---APGVIVVPSFLAK 111 (174)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-C---------C---CSSEEEEEGGGCT
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccc---------c---CCCeEEEEccccC
Confidence 33444554444321 124679999999999999999999999998888765421 2 3468899988889
Q ss_pred CCCCCCccEEEEeCCCC
Q 006800 533 GLDIKSIKSVVNFDIAR 549 (630)
Q Consensus 533 Gldi~~v~~VI~~~~p~ 549 (630)
|+.+ +.||.+++..
T Consensus 112 GlEf---~~V~~~~~~~ 125 (174)
T 3dmn_A 112 GLEF---DAVIVWNANQ 125 (174)
T ss_dssp TCCE---EEEEEETCBT
T ss_pred CcCC---CEEEEecCCc
Confidence 9987 6788877643
No 440
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=40.26 E-value=16 Score=33.57 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=13.0
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
.+++.|+.|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999965
No 441
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=40.18 E-value=17 Score=36.84 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=15.7
Q ss_pred CEEEEeCCCChHHHHHHHHHHHH
Q 006800 264 DIIGIAKTGSGKTAAFVLPMIVH 286 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~ 286 (630)
-.++.|+||+|||.. +=++..
T Consensus 27 l~vi~G~NGaGKT~i--leAI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSI--FEAVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHH--HHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHH
Confidence 368999999999965 444444
No 442
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=40.08 E-value=16 Score=32.97 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=15.6
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHH
Q 006800 264 DIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
-+++.|++|||||.. .-.|...
T Consensus 2 ~I~i~G~~GsGKsT~--~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI--SAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHH--HHHHHHH
T ss_pred EEEEECCCccCHHHH--HHHHHHh
Confidence 368999999999964 3344443
No 443
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=40.07 E-value=17 Score=31.81 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=19.4
Q ss_pred HcCCCEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
..|.-+.+.+|.|+|||. ++-++..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 355667899999999995 355555554
No 444
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=39.99 E-value=19 Score=37.17 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 254 QALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 254 ~~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
..+..++.|.++ +.-|.||||||.+
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeE
Confidence 367778889875 5667999999965
No 445
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=39.93 E-value=13 Score=40.67 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=13.9
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999964
No 446
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=39.90 E-value=16 Score=31.91 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.7
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
+-+++.|++|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999965
No 447
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=39.76 E-value=35 Score=35.00 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=18.3
Q ss_pred HHHHHH-----cCCCEEEEeCCCChHHHH
Q 006800 255 ALPIIL-----SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il-----~g~d~l~~a~TGsGKT~~ 278 (630)
.+..++ .|.-+++.+|+|+|||..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTL 194 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQL 194 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHH
Confidence 355555 346789999999999964
No 448
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=39.74 E-value=15 Score=32.56 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.9
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-+++.+++|||||.+
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 455688999999999964
No 449
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=39.65 E-value=16 Score=36.78 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=18.8
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyT 102 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYT 102 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceE
Confidence 56667788775 5667999999966
No 450
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=39.60 E-value=12 Score=33.44 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=12.4
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
-+.+++++|||||..
T Consensus 4 ~v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEEESCHHHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999964
No 451
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=39.58 E-value=20 Score=37.35 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=18.4
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHh
Q 006800 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
.+++++.+|+|+|||.. .-++...+
T Consensus 50 ~~~iLl~GppGtGKT~l--ar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI--ARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHH--HHHHHHHT
T ss_pred CceEEEEcCCCCCHHHH--HHHHHHHc
Confidence 46899999999999964 34444443
No 452
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=39.42 E-value=20 Score=36.60 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=18.2
Q ss_pred HHHHHHcCCC--EEEEeCCCChHHHH
Q 006800 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d--~l~~a~TGsGKT~~ 278 (630)
.+..++.|.+ ++.-|.||||||.+
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyT 151 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHT 151 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeE
Confidence 4556778876 46667999999966
No 453
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=39.38 E-value=35 Score=33.90 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=27.2
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHH
Q 006800 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 310 (630)
-+++.+|.|+|||.. ++.++..+... +.+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL-~Lq~~~~~~~~-----g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNF-GLTMVSSYMRQ-----YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHHHH-----CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHhc-----CCCceEEEEeccchh
Confidence 478999999999964 55555555421 125578888764444
No 454
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=39.34 E-value=14 Score=34.83 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=17.8
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAAFVLPMIVH 286 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~ 286 (630)
.|.-+.+.||+|||||.. +-++.-
T Consensus 30 ~Ge~~~iiG~nGsGKSTL--l~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM--LNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTT
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhc
Confidence 567789999999999953 444443
No 455
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=39.26 E-value=20 Score=36.28 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=14.8
Q ss_pred cCCC--EEEEeCCCChHHHH
Q 006800 261 SGRD--IIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d--~l~~a~TGsGKT~~ 278 (630)
.|.+ ++.-|.||||||.+
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 4776 58889999999965
No 456
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=39.04 E-value=58 Score=25.79 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=38.8
Q ss_pred CCCEEEEc------cchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEE
Q 006800 470 DGDVLVFA------SKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524 (630)
Q Consensus 470 ~~~iLIF~------~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VL 524 (630)
..+++||. +.-..|..+..+|...++.+..+.-..++..+..+...+....++.|
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 45799987 45678999999999999888888776666655555554433344444
No 457
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=38.90 E-value=18 Score=30.68 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=32.0
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCCc-EEEEeCCCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~ 505 (630)
...+++|||.+-..+..++..|...|+. +..+.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3568999999988899999999999995 999999863
No 458
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=38.82 E-value=17 Score=32.88 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.8
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.-++++|++|||||.+
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4589999999999965
No 459
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=38.78 E-value=17 Score=33.85 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=14.5
Q ss_pred CCCEEEEeCCCChHHHHH
Q 006800 262 GRDIIGIAKTGSGKTAAF 279 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~ 279 (630)
.+-+++.||+||||+.+.
T Consensus 29 ~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp CEEEEEECCTTCCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 355788999999999763
No 460
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=38.52 E-value=18 Score=32.91 Aligned_cols=18 Identities=33% Similarity=0.017 Sum_probs=14.6
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.+.-+.+.|++|||||..
T Consensus 20 ~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 445678999999999964
No 461
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=38.42 E-value=20 Score=37.66 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.2
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
...++++.||+|+|||.+
T Consensus 200 ~~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SSCEEEEESCTTTTTHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 346899999999999964
No 462
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=38.41 E-value=18 Score=32.75 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=12.9
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
.+.+.|++|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999964
No 463
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=38.38 E-value=18 Score=32.78 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=13.2
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
-++++|++|||||.+
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999965
No 464
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=38.27 E-value=40 Score=38.41 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=42.8
Q ss_pred CCCCEEEEccchhhHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~ 528 (630)
.+.+++|.++|..-|.+.+..+.. .|+.++++.|+++...|..+. ...|+++|.
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 345899999999888777766654 589999999999987766554 378999994
No 465
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=38.24 E-value=19 Score=32.68 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.3
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.+.-++++|+.|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 456789999999999965
No 466
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=38.14 E-value=49 Score=30.95 Aligned_cols=62 Identities=11% Similarity=0.203 Sum_probs=45.3
Q ss_pred CCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCc-EEEEeCCCCHHHHHHHHHHhhcCCceEEEEc
Q 006800 451 PSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (630)
Q Consensus 451 ~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT 527 (630)
+....|-...+..+... ..++||+|++..-+..+.+.+...+.. +..++|+.. ....|+|+|
T Consensus 116 ~tG~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T 178 (237)
T 2fz4_A 116 PTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVST 178 (237)
T ss_dssp SSSTTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEe
Confidence 34455654444443332 578999999999999999998887888 899998764 256788888
No 467
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=37.90 E-value=19 Score=33.09 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=13.0
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
.+++.|++|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999965
No 468
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=37.85 E-value=18 Score=32.85 Aligned_cols=14 Identities=36% Similarity=0.318 Sum_probs=12.4
Q ss_pred EEEEeCCCChHHHH
Q 006800 265 IIGIAKTGSGKTAA 278 (630)
Q Consensus 265 ~l~~a~TGsGKT~~ 278 (630)
+.+.|++|||||.+
T Consensus 5 i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 5 VGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999965
No 469
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=37.71 E-value=1.3e+02 Score=33.29 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=50.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhh--------------------------------cCceEEEEECCCChHHHHHHH
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKS--------------------------------HGIRVSAVYGGMSKLDQFKEL 345 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~--------------------------------~~~~~~~~~gg~~~~~~~~~l 345 (630)
+..+||.||++.-|..++..+.+.... ....+...+|+.+..++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 566999999999999998888764321 123477888888776553322
Q ss_pred ---H-cCCcEEEeChHHHHHHHHccccccCceeEEEec
Q 006800 346 ---K-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (630)
Q Consensus 346 ---~-~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvD 379 (630)
. +...|+|||. .+. ..+++..+.+||-+
T Consensus 332 ~~f~~g~~~vlvaT~-----~l~-~Gidip~~~~VI~~ 363 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TLA-AGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHTTCSCEEEECG-----GGG-GSSCCCBSEEEECC
T ss_pred HHHHcCCCeEEEECh-----HHh-cccCCCceEEEEeC
Confidence 2 3478999994 332 34457777776643
No 470
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=37.70 E-value=17 Score=36.55 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=18.2
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFT 101 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEe
Confidence 45556788764 6677999999966
No 471
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=37.53 E-value=20 Score=33.01 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=14.2
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
+..+++.|++|||||.+
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34689999999999965
No 472
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=37.49 E-value=24 Score=36.77 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=18.1
Q ss_pred HHHHHHcCCCE--EEEeCCCChHHHH
Q 006800 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 255 ~i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
.+..++.|.++ +.-|.||||||.+
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 45566788764 6667999999965
No 473
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=37.42 E-value=18 Score=34.07 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.0
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.+.-++++|+.|||||..
T Consensus 26 ~~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 346789999999999964
No 474
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=37.17 E-value=15 Score=32.91 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=12.4
Q ss_pred EEEEeCCCChHHHH
Q 006800 265 IIGIAKTGSGKTAA 278 (630)
Q Consensus 265 ~l~~a~TGsGKT~~ 278 (630)
+++.|+.|||||.+
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999965
No 475
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=37.06 E-value=15 Score=35.17 Aligned_cols=16 Identities=31% Similarity=0.231 Sum_probs=13.7
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.-++++|++|||||..
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 4588999999999965
No 476
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=36.95 E-value=19 Score=31.28 Aligned_cols=15 Identities=33% Similarity=0.255 Sum_probs=12.9
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
.+++.+++|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 378999999999965
No 477
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=36.70 E-value=17 Score=42.91 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=48.7
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-----CcccC-CCCCCccEE
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAARG-LDIKSIKSV 542 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-----~~~~G-ldi~~v~~V 542 (630)
..+++||.+|++.-+...+..|....-.++.++|+.+ .++...|+|+|. .+.++ ..+..+.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 3568999999999999999999887668999999886 345688999982 33333 335566666
Q ss_pred EE
Q 006800 543 VN 544 (630)
Q Consensus 543 I~ 544 (630)
|+
T Consensus 295 VI 296 (1108)
T 3l9o_A 295 IF 296 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 478
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=36.68 E-value=24 Score=31.50 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=13.1
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.-++++++.|+|||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 3478899999999963
No 479
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=36.61 E-value=22 Score=32.39 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.4
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.+.-++++|+.|||||.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999965
No 480
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=36.50 E-value=1.2e+02 Score=28.93 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=56.6
Q ss_pred CCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---HHHHH
Q 006800 270 KTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELK 346 (630)
Q Consensus 270 ~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~ 346 (630)
...+||... +.-++..+.. .+.++||.+.++..+..+...+.+. .|+.+..++|+.+..+. +..+.
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~-------~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~ 160 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQ 160 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh-------CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhc
Confidence 356789864 5555555433 2567999999998887776666552 27788888888764433 33444
Q ss_pred cC--Cc-EEEeChHHHHHHHHccccccCceeEEEe
Q 006800 347 AG--CE-IVIATPGRLIDMLKMKALTMSRVTYLVL 378 (630)
Q Consensus 347 ~~--~d-Iiv~Tp~~L~~~l~~~~~~l~~i~~lVv 378 (630)
.+ +. ++++|-. ....+++.....||+
T Consensus 161 ~~~~~~v~L~st~~------~g~Glnl~~a~~VI~ 189 (271)
T 1z5z_A 161 NNPSVKFIVLSVKA------GGFGINLTSANRVIH 189 (271)
T ss_dssp HCTTCCEEEEECCT------TCCCCCCTTCSEEEE
T ss_pred CCCCCCEEEEehhh------hcCCcCcccCCEEEE
Confidence 44 44 4555531 123455666666665
No 481
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=36.47 E-value=19 Score=32.35 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=15.7
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|+.+++.++.|+|||..
T Consensus 15 ~G~gvli~G~SGaGKStl 32 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSEL 32 (181)
T ss_dssp TTEEEEEEESSSSSHHHH
T ss_pred CCEEEEEEcCCCCCHHHH
Confidence 467899999999999965
No 482
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=36.45 E-value=19 Score=36.75 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=17.3
Q ss_pred HHHHHcCCCE--EEEeCCCChHHHH
Q 006800 256 LPIILSGRDI--IGIAKTGSGKTAA 278 (630)
Q Consensus 256 i~~il~g~d~--l~~a~TGsGKT~~ 278 (630)
+..++.|.++ +.-|.||||||.+
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeE
Confidence 4456788764 5677999999965
No 483
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=36.30 E-value=20 Score=32.22 Aligned_cols=15 Identities=33% Similarity=0.271 Sum_probs=13.0
Q ss_pred CEEEEeCCCChHHHH
Q 006800 264 DIIGIAKTGSGKTAA 278 (630)
Q Consensus 264 d~l~~a~TGsGKT~~ 278 (630)
-+.+.+++|||||.+
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999965
No 484
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=36.14 E-value=20 Score=31.91 Aligned_cols=14 Identities=43% Similarity=0.363 Sum_probs=12.4
Q ss_pred EEEEeCCCChHHHH
Q 006800 265 IIGIAKTGSGKTAA 278 (630)
Q Consensus 265 ~l~~a~TGsGKT~~ 278 (630)
+++.|+.|||||.+
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999965
No 485
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=35.85 E-value=15 Score=47.19 Aligned_cols=20 Identities=45% Similarity=0.464 Sum_probs=17.5
Q ss_pred HHcCCCEEEEeCCCChHHHH
Q 006800 259 ILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 259 il~g~d~l~~a~TGsGKT~~ 278 (630)
+..++.++++||||+|||..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHH
T ss_pred HHCCCeEEEECCCCCCHHHH
Confidence 44779999999999999965
No 486
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=35.75 E-value=19 Score=33.37 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.5
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-+.+.+|.|+|||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999964
No 487
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=35.53 E-value=12 Score=33.19 Aligned_cols=17 Identities=29% Similarity=0.120 Sum_probs=10.6
Q ss_pred CCCEEEEeCCCChHHHH
Q 006800 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
+.-+++.|+.|||||.+
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999965
No 488
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=35.52 E-value=31 Score=29.41 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=31.5
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCCc-EEEEeCCCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~ 505 (630)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 4567999999988899999999999985 888888853
No 489
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=35.32 E-value=18 Score=34.16 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.3
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-+.+.||+|+|||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999963
No 490
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=35.19 E-value=20 Score=37.55 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=38.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHc-CCcEEEeCh
Q 006800 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATP 356 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp 356 (630)
+.++||.||++.-|..++..+.+. ++.+..+++.. ....+..+.. ...|+|||-
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~-R~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKS-YDTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTC-CCCCGGGSSSCCCSEEEESS
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHH-HHHHHhhccCCCceEEEECC
Confidence 456999999999999888887775 78888887742 2222223333 368999994
No 491
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=35.09 E-value=22 Score=33.78 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=15.1
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-+.+.+++|||||.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999964
No 492
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=35.05 E-value=51 Score=26.72 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=32.1
Q ss_pred CCeEEEEcccHHHHHHHHH-HHHHHhhhcCce-EEEEECCCChHHHHHHHHcCCcEEEeChH
Q 006800 298 GPIGVICAPTRELAHQIYL-ETKKFAKSHGIR-VSAVYGGMSKLDQFKELKAGCEIVIATPG 357 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~-~~~~~~~~~~~~-~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~ 357 (630)
..++|++|++=--...+.. .+++.++..++. +.+...+.. ........+|+||+||.
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~---~~~~~~~~~DlIi~t~~ 76 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVG---EAKGLASNYDIVVASNH 76 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHH---HHHHHGGGCSEEEEETT
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHH---HHhhccCCCcEEEECCc
Confidence 4568899985433333333 566666666776 433332222 22222346999999984
No 493
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=35.00 E-value=21 Score=33.09 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=12.6
Q ss_pred EEEEeCCCChHHHH
Q 006800 265 IIGIAKTGSGKTAA 278 (630)
Q Consensus 265 ~l~~a~TGsGKT~~ 278 (630)
+++.|++|||||.+
T Consensus 3 I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999965
No 494
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=34.15 E-value=57 Score=32.88 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=14.9
Q ss_pred ChHHHHHHHHccccccCceeEEEecc
Q 006800 355 TPGRLIDMLKMKALTMSRVTYLVLDE 380 (630)
Q Consensus 355 Tp~~L~~~l~~~~~~l~~i~~lVvDE 380 (630)
++..+..++..-. .+..+++||||=
T Consensus 243 ~~~~~~~ll~~l~-~~~~yD~VIID~ 267 (373)
T 3fkq_A 243 SYADIDTLIGNIQ-GMDNYDEIIVDL 267 (373)
T ss_dssp CHHHHHHHHHHHH-HTSCCSEEEEEC
T ss_pred CHHHHHHHHHHHH-hcCCCCEEEEeC
Confidence 5555555554322 234789999993
No 495
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=33.85 E-value=31 Score=33.04 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=30.1
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006800 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
|..+++.+.+|+||| ++.+.++..-..+ |-++++++-. +-..++...+..+
T Consensus 21 gs~~li~g~p~~~~~-~l~~qfl~~g~~~-------Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 21 SLILIHEEDASSRGK-DILFYILSRKLKS-------DNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp CEEEEEECSGGGCHH-HHHHHHHHHHHHT-------TCEEEEEECS-SCHHHHHHHHHHT
T ss_pred CcEEEEEeCCCccHH-HHHHHHHHHHHHC-------CCcEEEEEEe-CCHHHHHHHHHHc
Confidence 356778778888888 5556665554332 5567777643 3333455555554
No 496
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=33.81 E-value=20 Score=33.47 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.0
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-+.+.||.|+|||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566778999999999953
No 497
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=33.75 E-value=23 Score=29.96 Aligned_cols=37 Identities=8% Similarity=0.288 Sum_probs=31.6
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCCc-EEEEeCCCC
Q 006800 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~ 505 (630)
...+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3567999999988899999999999995 888888853
No 498
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=33.68 E-value=20 Score=33.65 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.4
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006800 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.|.-+.+.+|.|+|||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999963
No 499
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=33.64 E-value=93 Score=24.77 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=39.0
Q ss_pred CCCEEEEcc------chhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEE
Q 006800 470 DGDVLVFAS------KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524 (630)
Q Consensus 470 ~~~iLIF~~------s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VL 524 (630)
..+++||.. .-..|..+..+|...++.+..+.=..+...+..+........+++|
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i 74 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQL 74 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 457888876 4568999999999999999888877776656555544432334443
No 500
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=33.51 E-value=24 Score=31.98 Aligned_cols=16 Identities=25% Similarity=-0.045 Sum_probs=13.4
Q ss_pred CCEEEEeCCCChHHHH
Q 006800 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.-+.+.|++|||||..
T Consensus 23 ~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTL 38 (201)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578899999999964
Done!