BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006802
(630 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 135/262 (51%), Gaps = 17/262 (6%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LH+A+ G+L V +LQ + N + ETPL++AA +GH + + +LQ N
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVS------NVKVETPLHMAARAGHTEVAKYLLQ--N 69
Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHI 241
+ A++ H AA+ GH ++K LL PNL T + T LH AA +GH+
Sbjct: 70 KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT---AGHTPLHIAAREGHV 126
Query: 242 DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALH 301
+ V LLE +++ A + + G T LH AA+ G + V + L+ +D K G T LH
Sbjct: 127 ETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLH 184
Query: 302 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN 361
+AV N DIV +L+ P G T LHIA K+ + ++ R LL G N+ +
Sbjct: 185 VAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG-SANAES 242
Query: 362 KAGESPLDVAEKLGNTELFSLL 383
G +PL +A + G+ E+ +LL
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALL 264
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 159/310 (51%), Gaps = 21/310 (6%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E N + G LH+AAR G++ V+ +L+ +A++A ++KK G TPL+VAA
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-EASQA--CMTKK---GFTPLHVAA 154
Query: 168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTD 225
+ G + E +L+ A+ +NG HVA +L+++K LL G P+ +
Sbjct: 155 KYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH---SPA 209
Query: 226 LSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKD 285
+ T LH AA Q ++V LL+ + A G T LH AA+ GH E+V L+SK
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268
Query: 286 PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 345
+ G +K G T LH+ + + + LI+ ++ G T LH+A G ++
Sbjct: 269 -ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKL 326
Query: 346 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH---SKDHGKPPSATK 402
V+ LL + DVN+ K G SPL A + G+T++ +LL + GA+ S D P + K
Sbjct: 327 VKFLLQHQA-DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 385
Query: 403 QLKQ-TVSDI 411
+L +V+D+
Sbjct: 386 RLGYISVTDV 395
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 92/154 (59%), Gaps = 4/154 (2%)
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 294
AA G+ D V L+E +++ + ++G+T LH AA+ GH E+VK L+SK + D
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DS 68
Query: 295 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 354
G+T LH A K +++IV LI V +D+ G T LH A K+G +IV+ L+S +G
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLIS-KG 126
Query: 355 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
DVN+ + G +PLD+A + GN E+ LL++ G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 4/149 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA+ G+ + +K+L+ + V +D T LH AA +GH ++V L+ +++ +
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDS 68
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
+G+T LH AA+ GH E+VK L+SK + D G+T LH A K +++IV LI
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
V D+ G T L +A + G +IV+ L
Sbjct: 128 DV-NTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 266 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 325
L AA G+ + VK L+ +D G+T LH A K +++IV LI V
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVN-ASDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NA 65
Query: 326 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
+D+ G T LH A K+G +IV+ L+S +G DVN+ + G +PL A K G+ E+ LL
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLIS-KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 386 AGA 388
GA
Sbjct: 125 KGA 127
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 303 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 362
A + N+D V +LI V D+ G T LH A K+G +IV+ L+S +G DVN+ +
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLIS-KGADVNAKDS 68
Query: 363 AGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH-GKPP 398
G +PL A K G+ E+ LL GA ++KD G+ P
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTP 106
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 16/152 (10%)
Query: 98 ERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQ 157
+R I G DS G+ LH AA+ G+ ++++L S A+ ++ K+
Sbjct: 18 DRVKDLIENGADVNASDSDGRT---PLHYAAKEGH-KEIVKLLISKGAD-----VNAKDS 68
Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLG 215
+G TPL+ AA+ GH IV+ ++ + A + A+ +G H AAK+GH E++K L+
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLIS----KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 216 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
+ + V T+D T L A G+ ++V L
Sbjct: 125 KGAD-VNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 12/158 (7%)
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRT 292
AA G+ D V LLE +++ + ++GKT LH AA GH EVVK L+S+ DP+
Sbjct: 11 AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---K 66
Query: 293 DKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
D G+T LH+A + ++++V L+ DP+ +D+ G T LH+A + G ++V+ LL
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAENGHKEVVKLLL 123
Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
S +G D N+ + G +PLD+A + GN E+ LL++ G
Sbjct: 124 S-QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 69/137 (50%), Gaps = 18/137 (13%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEIL-QSCDANEAKDLLSKKNQEGETPLYVAAESGHA 172
DS GK LHLAA G+ V +L Q D N K+ +G+TPL++AAE+GH
Sbjct: 34 DSDGKT---PLHLAAENGHKEVVKLLLSQGADPN-------AKDSDGKTPLHLAAENGHK 83
Query: 173 LIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCST 230
+V+ +L A +G H+AA+ GH EV+K LL G PN T+D T
Sbjct: 84 EVVKLLLSQGADPNAK--DSDGKTPLHLAAENGHKEVVKLLLSQGADPN---TSDSDGRT 138
Query: 231 ALHTAAAQGHIDVVNFL 247
L A G+ +VV L
Sbjct: 139 PLDLAREHGNEEVVKLL 155
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 303 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 362
A + N+D V +L+ V D+ G T LH+A + G ++V+ LLS +G D N+ +
Sbjct: 11 AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLS-QGADPNAKDS 68
Query: 363 AGESPLDVAEKLGNTELFSLLKEAGA-AHSKD-HGKPP 398
G++PL +A + G+ E+ LL GA ++KD GK P
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTP 106
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 85.5 bits (210), Expect = 8e-17, Method: Composition-based stats.
Identities = 53/128 (41%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
NG+T LH AAR GHLEVVK L+ + DK G+T LH+A + + ++V L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 380
V +D G T LH+A + G ++V+ LL G DVN+ +K G +PL +A + G+ E+
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 381 SLLKEAGA 388
LL EAGA
Sbjct: 118 KLLLEAGA 125
Score = 82.4 bits (202), Expect = 6e-16, Method: Composition-based stats.
Identities = 56/126 (44%), Positives = 76/126 (60%), Gaps = 8/126 (6%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLGE 216
G TPL++AA +GH +V+ +L+ A + A+ NG H+AA+ GHLEV+K LL E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-E 56
Query: 217 FPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE 276
V D + T LH AA GH++VV LLE +++ NG+T LH AAR GHLE
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLE 115
Query: 277 VVKALV 282
VVK L+
Sbjct: 116 VVKLLL 121
Score = 80.1 bits (196), Expect = 3e-15, Method: Composition-based stats.
Identities = 53/124 (42%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
NG H+AA+ GHLEV+K LL E V D + T LH AA GH++VV LLE +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 312
++ NG+T LH AAR GHLEVVK L+ + DK G+T LH+A + + ++V
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVV 117
Query: 313 LELI 316
L+
Sbjct: 118 KLLL 121
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 54/132 (40%), Positives = 75/132 (56%), Gaps = 13/132 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAAR G+L V +L EA ++ K++ G TPL++AA +GH +V+ +L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 180 QHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
+ A + A +NG H+AA+ GHLEV+K LL E V D + T LH AA
Sbjct: 56 E----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAAR 110
Query: 238 QGHIDVVNFLLE 249
GH++VV LLE
Sbjct: 111 NGHLEVVKLLLE 122
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+T LH+A + + ++V L+ V +D G T LH+A + G ++V+ LL G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKD-HGKPP 398
DVN+ +K G +PL +A + G+ E+ LL EAGA ++KD +G+ P
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 12/109 (11%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E + ++ K G LHLAAR G+L V +L EA ++ K++ G TPL++AA
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL------EAGADVNAKDKNGRTPLHLAA 76
Query: 168 ESGHALIVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELL 214
+GH +V+ +L+ A + A +NG H+AA+ GHLEV+K LL
Sbjct: 77 RNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 114/235 (48%), Gaps = 10/235 (4%)
Query: 155 KNQEGETPLYVAAESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHLEVLKEL 213
++Q +PL+ AAE+GH I ++Q N++T S R AA+ HLE +K L
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRT---PLMEAAENNHLEAVKYL 63
Query: 214 LGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG 273
+ + LV D ST LH AA +GH +VV +LL + G T + A
Sbjct: 64 I-KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA 333
H+++VK L+SK R D + LH A DI E++ L + G++
Sbjct: 123 HVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSP 180
Query: 334 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
LHIA ++ R V LS + DV NK GE+PL A N++++S L+ + A
Sbjct: 181 LHIAARENRYDCVVLFLSRDS-DVTLKNKEGETPLQCASL--NSQVWSALQMSKA 232
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 151 LLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVL 210
L+ K+ EG T L++AA+ GH +V+ +L + ++ + G+ A + H++++
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV-NCQDDGGWTPMIWATEYKHVDLV 127
Query: 211 KELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA 270
K LL + ++ + + + LH AA G +D+ LL +L + +G + LH AA
Sbjct: 128 KLLLSKGSDINIRDNEE-NICLHWAAFSGCVDIAEILLAAKCDLHAV-NIHGDSPLHIAA 185
Query: 271 RMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA 303
R + V +S+D + +K+G+T L A
Sbjct: 186 RENRYDCVVLFLSRDSDVTLK-NKEGETPLQCA 217
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 294
AA G+ D V L+E +++ + ++G+T LH AA GH EVVK L+SK + D
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DS 68
Query: 295 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 354
G+T LH A + ++++V LI V +D+ G T LH A + G ++V+ L+S +G
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLIS-KG 126
Query: 355 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
DVN+ + G +PLD+A + GN E+ LL++ G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 16/136 (11%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
DS G+ LH AA G+ V+++L S A+ ++ K+ +G TPL+ AAE+GH
Sbjct: 34 DSDGR---TPLHHAAENGH-KEVVKLLISKGAD-----VNAKDSDGRTPLHHAAENGHKE 84
Query: 174 IVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA 231
+V+ ++ + A + A+ +G H AA+ GH EV+K L+ + + V T+D T
Sbjct: 85 VVKLLIS----KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTP 139
Query: 232 LHTAAAQGHIDVVNFL 247
L A G+ +VV L
Sbjct: 140 LDLAREHGNEEVVKLL 155
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 12/158 (7%)
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRT 292
AA G+ D V LLE ++ + ++G+T LH AA GH E+VK L+SK DP+
Sbjct: 11 AAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---K 66
Query: 293 DKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
D G+T LH A + +++IV L+ DP+ +D+ G T LH A + G +IV+ LL
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIVKLLL 123
Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
S +G D N+ + G +PLD+A + GN E+ LL++ G
Sbjct: 124 S-KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 13/139 (9%)
Query: 266 LHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPS 321
L AA G+ + VK L+ DP+ +D G+T LH A + +++IV L+ DP+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNA---SDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
+D+ G T LH A + G +IV+ LLS +G D N+ + G +PL A + G+ E+
Sbjct: 65 A---KDSDGRTPLHYAAENGHKEIVKLLLS-KGADPNAKDSDGRTPLHYAAENGHKEIVK 120
Query: 382 LLKEAGA--AHSKDHGKPP 398
LL GA S G+ P
Sbjct: 121 LLLSKGADPNTSDSDGRTP 139
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E + ++ G LH AA G+ ++++L S A+ + K+ +G TPL+ AA
Sbjct: 25 ENGADPNASDSDGRTPLHYAAENGH-KEIVKLLLSKGADP-----NAKDSDGRTPLHYAA 78
Query: 168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTD 225
E+GH IV+ +L A +G H AA+ GH E++K LL G PN T+D
Sbjct: 79 ENGHKEIVKLLLSKGADPNAK--DSDGRTPLHYAAENGHKEIVKLLLSKGADPN---TSD 133
Query: 226 LSCSTALHTAAAQGHIDVVNFL 247
T L A G+ ++V L
Sbjct: 134 SDGRTPLDLAREHGNEEIVKLL 155
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
+GY H+AA GHLE+++ LL + V +DL+ T LH AAA GH+++V LL+ +
Sbjct: 46 DGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
++ N+G T LH AA+ GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 105 DV-NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 4/153 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ N+G T LH AA GHLE+V+ L+ K+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNA 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
+D G T LH+A + +IV L++ V DN G+T LH+A K G +IV LL
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
G DVN+ +K G++ D++ GN +L +L+
Sbjct: 135 -HGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ TD G T LH+A + +IV E++ + +
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVN-ATDNDGYTPLHLAASNGHLEIV-EVLLKNGA 71
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
+ D G T LH+A G +IV LL G DVN+ + G +PL +A K G+ E+
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLK-HGADVNAYDNDGHTPLHLAAKYGHLEIVE 130
Query: 382 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
+L + HG +A + +T DI D
Sbjct: 131 VLLK--------HGADVNAQDKFGKTAFDISID 155
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ + +G TPL++AA +GH IVE +L+ N
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNATDNDGYTPLHLAASNGHLEIVEVLLK--NGAD 72
Query: 187 ASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNF 246
+ G H+AA GHLE+++ LL + V D T LH AA GH+++V
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEV 131
Query: 247 LLE 249
LL+
Sbjct: 132 LLK 134
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L V +L++ A DL G TPL++AA +GH IVE +L
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADVNASDL------TGITPLHLAAATGHLEIVEVLL 100
Query: 180 QHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
+H A + A +G+ H+AAK GHLE+++ LL + V D TA +
Sbjct: 101 KH----GADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISID 155
Query: 238 QGHIDVVNFL 247
G+ D+ L
Sbjct: 156 NGNEDLAEIL 165
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ +G T LH AAR GHLE+V+ L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
DK G T LH+A + + +IV L++ V +D G T LH+A ++G +IV LL
Sbjct: 65 -DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 387
G DVN+ +K G++P D+A GN ++ +L++A
Sbjct: 123 -AGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 14/157 (8%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ K+++G TPL++AA GH IVE +L+
Sbjct: 9 AARAGQDDEVRILM----ANGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLK----AG 58
Query: 187 ASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A ++GY H+AA++GHLE+++ LL + V D T LH AA +GH+++V
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIV 117
Query: 245 NFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
LL+ +++ GKT A G+ ++ + L
Sbjct: 118 EVLLKAGADV-NAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 6/139 (4%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ + DK G T LH+A + + +IV L++
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V +D G T LH+A ++G +IV LL G DVN+ +K G +PL +A + G+ E+
Sbjct: 61 V-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 382 LLKEAGA-AHSKDH-GKPP 398
+L +AGA +++D GK P
Sbjct: 119 VLLKAGADVNAQDKFGKTP 137
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 64/103 (62%), Gaps = 12/103 (11%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
++ K G LHLAAR G+L ++E+L A+ ++ K+++G TPL++AA GH
Sbjct: 29 NAKDKDGYTPLHLAAREGHL-EIVEVLLKAGAD-----VNAKDKDGYTPLHLAAREGHLE 82
Query: 174 IVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELL 214
IVE +L+ A + A ++GY H+AA++GHLE+++ LL
Sbjct: 83 IVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ +G T LH AAR GHLE+V+ L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
DK G T LH+A + + +IV L++ V +D G T LH+A ++G +IV LL
Sbjct: 65 -DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 387
G DVN+ +K G++P D+A + G+ ++ +L++A
Sbjct: 123 -AGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
Score = 70.5 bits (171), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 14/157 (8%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ K+++G TPL++AA GH IVE +L+
Sbjct: 9 AARAGQDDEVRILM----ANGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLK----AG 58
Query: 187 ASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A ++GY H+AA++GHLE+++ LL + V D T LH AA +GH+++V
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIV 117
Query: 245 NFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
LL+ +++ GKT A R GH ++ + L
Sbjct: 118 EVLLKAGADV-NAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 6/139 (4%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ + DK G T LH+A + + +IV L++
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V +D G T LH+A ++G +IV LL G DVN+ +K G +PL +A + G+ E+
Sbjct: 61 V-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 382 LLKEAGA-AHSKDH-GKPP 398
+L +AGA +++D GK P
Sbjct: 119 VLLKAGADVNAQDKFGKTP 137
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 13/136 (9%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
++ K G LHLAAR G+L ++E+L A+ ++ K+++G TPL++AA GH
Sbjct: 29 NAKDKDGYTPLHLAAREGHL-EIVEVLLKAGAD-----VNAKDKDGYTPLHLAAREGHLE 82
Query: 174 IVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA 231
IVE +L+ A + A ++GY H+AA++GHLE+++ LL + V D T
Sbjct: 83 IVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTP 137
Query: 232 LHTAAAQGHIDVVNFL 247
A +GH D+ L
Sbjct: 138 FDLAIREGHEDIAEVL 153
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 10/220 (4%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
LH A +V E+L S LL +K+Q+G PL+ + I +L M
Sbjct: 6 LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGH 240
N+ P +G+ FH+A G+LEV+K L P+L T+ T LH A +
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKW 119
Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300
+V FL+E +++ +I + LH AA +G L++++ L S DK+G T L
Sbjct: 120 FEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 340
A+ + D + L+ + L DNKG A +A+ +
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 9/200 (4%)
Query: 198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA-QGHIDVVNFLLEI--DSNL 254
H A + ++ELL P+L++ D LH + + Q H ++ +FLL + NL
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNL 64
Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIVL 313
++G T H A +G+LEVVK+L + + +G T LH+AV + ++
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 314 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL--DVA 371
LI SV +++D LH A G +++ L + VN +K G +PL +A
Sbjct: 125 FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 372 EKLGNTELFSLLKEAGAAHS 391
E G+ + L+++ GA +
Sbjct: 184 EGHGDAAVL-LVEKYGAEYD 202
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 10/220 (4%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
LH A +V E+L S LL +K+Q+G PL+ + I +L M
Sbjct: 6 LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGH 240
N+ P +G+ FH+A G+LEV+K L P+L T+ T LH A +
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKW 119
Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300
+V FL+E +++ +I + LH AA +G L++++ L S DK+G T L
Sbjct: 120 FEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 340
A+ + D + L+ + L DNKG A +A+ +
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 9/200 (4%)
Query: 198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA-QGHIDVVNFLLEI--DSNL 254
H A + ++ELL P+L++ D LH + + Q H ++ +FLL + NL
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNL 64
Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIVL 313
++G T H A +G+LEVVK+L + + +G T LH+AV + ++
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 314 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL--DVA 371
LI SV +++D LH A G +++ L + VN +K G +PL +A
Sbjct: 125 FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 372 EKLGNTELFSLLKEAGAAHS 391
E G+ + L+++ GA +
Sbjct: 184 EGHGDAAVL-LVEKYGAEYD 202
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 10/220 (4%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
LH A +V E+L S LL +K+Q+G PL+ + I +L M
Sbjct: 6 LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGH 240
N+ P +G+ FH+A G+LEV+K L P+L T+ T LH A +
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKW 119
Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300
+V FL+E +++ +I + LH AA +G L++++ L S DK+G T L
Sbjct: 120 FEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 340
A+ + D + L+ + L DNKG A +A+ +
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 9/200 (4%)
Query: 198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA-QGHIDVVNFLLEI--DSNL 254
H A + ++ELL P+L++ D LH + + Q H ++ +FLL + NL
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNL 64
Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIVL 313
++G T H A +G+LEVVK+L + + +G T LH+AV + ++
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 314 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL--DVA 371
LI SV +++D LH A G +++ L + VN +K G +PL +A
Sbjct: 125 FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 372 EKLGNTELFSLLKEAGAAHS 391
E G+ + L+++ GA +
Sbjct: 184 EGHGDAAVL-LVEKYGAEYD 202
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 72.0 bits (175), Expect = 8e-13, Method: Composition-based stats.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 4/153 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ +G T LH AAR GHLE+V+ L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
DK G T LH+A + + +IV L++ V +D G T LH+A ++G +IV LL
Sbjct: 77 -DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
G DVN+ +K G++ D++ GN +L +L+
Sbjct: 135 -AGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 13/130 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ K+++G TPL++AA GH IVE +L+
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLK----AG 70
Query: 187 ASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A ++GY H+AA++GHLE+++ LL + V D T LH AA +GH+++V
Sbjct: 71 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIV 129
Query: 245 NFLLEIDSNL 254
LL+ +++
Sbjct: 130 EVLLKAGADV 139
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 4/127 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ + DK G T LH+A + + +IV L++
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V +D G T LH+A ++G +IV LL G DVN+ +K G +PL +A + G+ E+
Sbjct: 73 V-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVE 130
Query: 382 LLKEAGA 388
+L +AGA
Sbjct: 131 VLLKAGA 137
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 13/136 (9%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
++ K G LHLAAR G+L ++E+L A+ ++ K+++G TPL++AA GH
Sbjct: 41 NAKDKDGYTPLHLAAREGHL-EIVEVLLKAGAD-----VNAKDKDGYTPLHLAAREGHLE 94
Query: 174 IVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA 231
IVE +L+ A + A ++GY H+AA++GHLE+++ LL + V D TA
Sbjct: 95 IVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTA 149
Query: 232 LHTAAAQGHIDVVNFL 247
+ G+ D+ L
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L A GQ++++ ++ + + + +D G T LH+A ++G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKDHGKP 397
DVN+ +K G +PL +A + G+ E+ +L +AGA A KD P
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 116
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTV-LHSAARMGHLEVVKALVSKDPS 287
S+ LH AA G D++ LL+ +N ARN + V LH A + GH +VVK L+ +
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGANAG--ARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144
Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
+ D G T L A G + ++V L++ S+ +NKGNTALH A+ + +V
Sbjct: 145 PN-KKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVE 202
Query: 348 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
LL + G V LNK + +D AE+ N+++ LL+
Sbjct: 203 -LLLLHGASVQVLNKRQRTAVDCAEQ--NSKIMELLQ 236
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 16/181 (8%)
Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS--FHVAAKQGHLEVLKEL 213
+Q+G +PL+VAA G A ++ +L+H A+ ARN + H+A +QGH +V+K L
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKH----GANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 214 LGEF--PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 271
L PN DLS +T L A + GH ++V LL+ +++ + N G T LH A
Sbjct: 139 LDSNAKPN---KKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVI 194
Query: 272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN 331
H+ VV+ L+ S +K+ +TA+ A QN I +EL++ PS + D+
Sbjct: 195 EKHVFVVELLLLHGASVQV-LNKRQRTAVDCA--EQNSKI-MELLQVVPSCVASLDDVAE 250
Query: 332 T 332
T
Sbjct: 251 T 251
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 21/168 (12%)
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNN----GKTVLHSAARMGHLEVVKALVSKDPSTGF 290
A A G +++V +LLE + A + H + + ++K P++G
Sbjct: 18 AVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL 77
Query: 291 R---TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN------TALHIAIKKG 341
T + G + LH+A D++ P +LK N G LH+A ++G
Sbjct: 78 GVNVTSQDGSSPLHVAALHGRADLI-------PLLLKHGANAGARNADQAVPLHLACQQG 130
Query: 342 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
Q+V+CLL N + +G +PL A G+ EL +LL + GA+
Sbjct: 131 HFQVVKCLLD-SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS 177
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLA + G+ V +L S AK +KK+ G TPL A GH +V +LQH
Sbjct: 123 LHLACQQGHFQVVKCLLDS----NAKP--NKKDLSGNTPLIYACSGGHHELVALLLQH-- 174
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
ASI A N G + H A + H+ V++ LL
Sbjct: 175 --GASINASNNKGNTALHEAVIEKHVFVVELLL 205
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
L AA G D V L+ +N A + + G T LH AAR+GHLE+V+ L+ K+ +
Sbjct: 18 LLEAARAGQDDEVRILM---ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL-KNGADV 73
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
D G T LH+A K + +IV L++ V +D G+T LH+A G +IV L
Sbjct: 74 NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
L G DVN+ +K G++ D++ GN +L +L+
Sbjct: 133 LKY-GADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G H+AA+ GHLE+++ LL + V D S ST LH AA +GH+++V LL+ ++
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+ G T LH AA GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 106 V-NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ ++ G+TPL++AA GH IVE +L+ N
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNAEDTYGDTPLHLAARVGHLEIVEVLLK--NGAD 72
Query: 187 ASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNF 246
+ +G H+AAK+GHLE+++ LL ++ V D ST LH AA GH+++V
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLL-KYGADVNADDTIGSTPLHLAADTGHLEIVEV 131
Query: 247 LLEIDSNL 254
LL+ +++
Sbjct: 132 LLKYGADV 139
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ D G T LH+A + + +IV L++
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V L D G+T LH+A K+G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 73 VNAL-DFSGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGSTPLHLAADTGHLEIVE 130
Query: 382 LLKEAGA 388
+L + GA
Sbjct: 131 VLLKYGA 137
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L A GQ++++ ++ + + + ED G+T LH+A + G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLK-NGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 393
DVN+L+ +G +PL +A K G+ E+ +L + GA + D
Sbjct: 72 DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD 109
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
GD LHLAAR G+L V +L++ A D G TPL++AA+ GH IVE +L
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNALDF------SGSTPLHLAAKRGHLEIVEVLL 100
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
++ A + A + G H+AA GHLE+++ LL ++ V D TA +
Sbjct: 101 KY----GADVNADDTIGSTPLHLAADTGHLEIVEVLL-KYGADVNAQDKFGKTAFDISID 155
Query: 238 QGHIDVVNFL 247
G+ D+ L
Sbjct: 156 NGNEDLAEIL 165
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 44/90 (48%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
NG H+AA+ GHLEV+K LL E V D + T LH AA GH++VV LLE +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALV 282
++ NG+T LH AAR GHLEVVK L+
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
NG+T LH AAR GHLEVVK L+ + DK G+T LH+A + + ++V L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
V +D G T LH+A + G ++V+ LL
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLGE 216
G TPL++AA +GH +V+ +L+ A + A+ NG H+AA+ GHLEV+K LL E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-E 56
Query: 217 FPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE 249
V D + T LH AA GH++VV LLE
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+T LH+A + + ++V L+ V +D G T LH+A + G ++V+ LL G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
DVN+ +K G +PL +A + G+ E+ LL EAGA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 12/97 (12%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAAR G+L V +L EA ++ K++ G TPL++AA +GH +V+ +L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 180 QHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELL 214
+ A + A +NG H+AA+ GHLEV+K LL
Sbjct: 56 E----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 330 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA- 388
G T LH+A + G ++V+ LL G DVN+ +K G +PL +A + G+ E+ LL EAGA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 389 AHSKD-HGKPP 398
++KD +G+ P
Sbjct: 61 VNAKDKNGRTP 71
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E + ++ K G LHLAAR G+L V +L EA ++ K++ G TPL++AA
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL------EAGADVNAKDKNGRTPLHLAA 76
Query: 168 ESGHALIVEEMLQ 180
+GH +V+ +L+
Sbjct: 77 RNGHLEVVKLLLE 89
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 4/154 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ A N G T LH AA GHLE+V+ L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
+D G T LH+A + +IV L++ V + D+ G T LH+A K G +IV LL
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAM-DSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 135 -HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 15/126 (11%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
AARAG V ++ + D N A + G TPL++AA SGH IVE +L+H
Sbjct: 21 AARAGQDDEVRILMANGADVNAA-------DNTGTTPLHLAAYSGHLEIVEVLLKH---- 69
Query: 186 TASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
A + A + GY H+AA GHLE+++ LL + V D T LH AA G++++
Sbjct: 70 GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAKWGYLEI 128
Query: 244 VNFLLE 249
V LL+
Sbjct: 129 VEVLLK 134
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 266 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 325
L AAR G + V+ L++ D G T LH+A + +IV L++ V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DA 75
Query: 326 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
D G T LH+A G +IV LL G DVN+++ G +PL +A K G E+ +L +
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 386 AGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
HG +A + +T DI D
Sbjct: 135 --------HGADVNAQDKFGKTAFDISID 155
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA +G+L V +L+ +A D+ G TPL++AA GH IVE +L
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF------GYTPLHLAAYWGHLEIVEVLL 100
Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG 239
+ N + +G H+AAK G+LE+++ LL + V D TA + G
Sbjct: 101 K--NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNG 157
Query: 240 HIDVVNFLLEID 251
+ D+ L +++
Sbjct: 158 NEDLAEILQKLN 169
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 8/156 (5%)
Query: 232 LHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
L AA G D V L+ D N A + G T LH AA GHLE+V+ L+ K+ +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVV---GWTPLHLAAYWGHLEIVEVLL-KNGADV 73
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
D G T LH+A + +IV E++ + + + +D+ G T LH+A +G +IV L
Sbjct: 74 NAYDTLGSTPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
L G DVN+ +K G++ D++ GN +L +L++
Sbjct: 133 LKY-GADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 4/149 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA+ G + ++ L+ + V D+ T LH AA GH+++V LL+ +++
Sbjct: 21 AARAGRDDEVRILMANGAD-VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADV-NAYDT 78
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
G T LH AA GHLE+V+ L+ + D G T LH+A + +IV L++
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKNGADVNAK-DDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
V +D G TA I+I G + L
Sbjct: 138 DV-NAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 19/133 (14%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ + A D++ G TPL++AA GH IVE +L++
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVV------GWTPLHLAAYWGHLEIVEVLLKN----G 70
Query: 187 ASIPARNGYDS-----FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
A + N YD+ H+AA GHLE+++ LL + V D + T LH AA +GH+
Sbjct: 71 ADV---NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAANRGHL 126
Query: 242 DVVNFLLEIDSNL 254
++V LL+ +++
Sbjct: 127 EIVEVLLKYGADV 139
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ D G T LH+A + +IV E++ + +
Sbjct: 15 GKKLLE-AARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIV-EVLLKNGA 71
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
+ D G+T LH+A G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGADVNAKDDNGITPLHLAANRGHLEIVE 130
Query: 382 LLKEAGA 388
+L + GA
Sbjct: 131 VLLKYGA 137
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L A G+++++ ++ + + + D G T LH+A G +IV LL G
Sbjct: 15 GKKLLEAARAGRDDEV--RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLK-NGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKD 393
DVN+ + G +PL +A G+ E+ +L + GA ++KD
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L ++E+L A+ ++ K+ G TPL++AA GH IVE +L
Sbjct: 80 GSTPLHLAAHFGHL-EIVEVLLKNGAD-----VNAKDDNGITPLHLAANRGHLEIVEVLL 133
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
++ A + A++ G +F ++ G+ E L E+L
Sbjct: 134 KY----GADVNAQDKFGKTAFDISINNGN-EDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 8/153 (5%)
Query: 235 AAAQGHIDVVNFLLEIDSNLAKI-ARN-NGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 292
AA G D V L+ +N A + AR+ G T LH AA GHLE+V+ L+ +
Sbjct: 21 AARAGQDDEVRILM---ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK- 76
Query: 293 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 352
D G T LH+A + + +IV E++ + + + D+ G T LH+A K+G +IV LL
Sbjct: 77 DSLGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK- 134
Query: 353 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 13/125 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ + A+D G TPL++AA GH IVE +L++
Sbjct: 21 AARAGQDDEVRILMANGADVNARDF------TGWTPLHLAAHFGHLEIVEVLLKN----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A++ G H+AA++GHLE+++ LL + V +D T LH AA +GH+++V
Sbjct: 71 ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD-VNASDSHGFTPLHLAAKRGHLEIV 129
Query: 245 NFLLE 249
LL+
Sbjct: 130 EVLLK 134
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 8/151 (5%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA+ G + ++ L+ + V D + T LH AA GH+++V LL+ N A +
Sbjct: 21 AARAGQDDEVRILMANGAD-VNARDFTGWTPLHLAAHFGHLEIVEVLLK---NGADVNAK 76
Query: 261 N--GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 318
+ G T LH AAR GHLE+V+ L+ K+ + +D G T LH+A K + +IV E++
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLL-KNGADVNASDSHGFTPLHLAAKRGHLEIV-EVLLK 134
Query: 319 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
+ + + +D G TA I+I G + L
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ R D G T LH+A + +IV E++ + +
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHLEIV-EVLLKNGA 71
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
+ +D+ G T LH+A ++G +IV LL G DVN+ + G +PL +A K G+ E+
Sbjct: 72 DVNAKDSLGVTPLHLAARRGHLEIVEVLLK-NGADVNASDSHGFTPLHLAAKRGHLEIVE 130
Query: 382 LLKEAGA 388
+L + GA
Sbjct: 131 VLLKNGA 137
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA G+L V +L++ AKD L G TPL++AA GH IVE +L+ N
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAKDSL------GVTPLHLAARRGHLEIVEVLLK--N 102
Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
+ +G+ H+AAK+GHLE+++ LL + V D TA + G+ D+
Sbjct: 103 GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDL 161
Query: 244 VNFL 247
L
Sbjct: 162 AEIL 165
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 4/166 (2%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 288
ST LH A QGH+ +V L++ ++ + I G + +H AA+ GH +V L++K
Sbjct: 77 STPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 289 GFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
D+ G T L A + + D L+ + SV + NTALH A+ G T ++
Sbjct: 136 DM-MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 348 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 393
LL G +V++ N GES LD+A++ N + + L+EA A D
Sbjct: 195 LLLE-AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 5/149 (3%)
Query: 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNL 220
TPL+ A GH +V +++++ S+ G H+AA+ GH ++ L+ + ++
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYG--ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 221 VMTTDLSCSTALHTAAAQGH-IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVK 279
M D + T L AA + H +D LL + ++ + + T LH A G+ V+
Sbjct: 136 DM-MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 280 ALVSKDPSTGFRTDKKGQTALHMAVKGQN 308
L+ + + + KG++AL +A + +N
Sbjct: 195 LLLEAGANVDAQ-NIKGESALDLAKQRKN 222
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 120 GDLQ---LHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAAESGHALIV 175
GDL LH A R G+LS V+++++ D S + EG + +++AA+ GH IV
Sbjct: 73 GDLNSTPLHWATRQGHLSMVVQLMKYGADP-------SLIDGEGCSCIHLAAQFGHTSIV 125
Query: 176 EEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTD-LSCSTALHT 234
++ + + +NG AA + H LL F V D +TALH
Sbjct: 126 AYLIA--KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183
Query: 235 AAAQGHIDVVNFLLEIDSNL 254
A G+ V++ LLE +N+
Sbjct: 184 AVLAGNTTVISLLLEAGANV 203
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G+ H+AA GHLE+++ LL ++ L T LH AA +GH++VV LL+ N
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV-TPLHLAADRGHLEVVEVLLK---N 102
Query: 254 LAKIARN--NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
A + N NG T LH AA +GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 10/157 (6%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
L AA G D V L+ +N A + ++ G T LH AA GHLE+V+ L+ K+ +
Sbjct: 18 LLEAARAGQDDEVRILM---ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL-KNGADV 73
Query: 290 FRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 348
D G T LH+A +G E V+E++ + + + D+ G T LH+A G +IV
Sbjct: 74 NADDSLGVTPLHLAADRGHLE--VVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEV 131
Query: 349 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
LL G DVN+ +K G++ D++ GN +L +L++
Sbjct: 132 LLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ +D G T LH+A + +IV E++ + +
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVN-ASDHVGWTPLHLAAYFGHLEIV-EVLLKNGA 71
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
+ +D+ G T LH+A +G ++V LL G DVN+ + G +PL +A +G+ E+
Sbjct: 72 DVNADDSLGVTPLHLAADRGHLEVVEVLLK-NGADVNANDHNGFTPLHLAANIGHLEIVE 130
Query: 382 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
+L + HG +A + +T DI D
Sbjct: 131 VLLK--------HGADVNAQDKFGKTAFDISID 155
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 13/125 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ + G TPL++AA GH IVE +L++
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNASDHVGWTPLHLAAYFGHLEIVEVLLKN----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A + G H+AA +GHLEV++ LL + V D + T LH AA GH+++V
Sbjct: 71 ADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD-VNANDHNGFTPLHLAANIGHLEIV 129
Query: 245 NFLLE 249
LL+
Sbjct: 130 EVLLK 134
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 13/93 (13%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA G+L V+E+L A+ ++ + G TPL++AA GH IVE +L+H
Sbjct: 84 LHLAADRGHL-EVVEVLLKNGAD-----VNANDHNGFTPLHLAANIGHLEIVEVLLKH-- 135
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 136 --GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 4/154 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ ++GKT LH AA GHLE+V+ L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
DK G T LH+A + +IV E++ + + + D G T LH+A G +IV LL
Sbjct: 76 ADKMGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 135 Y-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 9/128 (7%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ ++ G+TPL++AA GH IVE +L+H
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 187 ASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNF 246
A+ + G H+AA GHLE+++ LL + V TD T LH AA GH+++V
Sbjct: 75 AA--DKMGDTPLHLAALYGHLEIVEVLLKNGAD-VNATDTYGFTPLHLAADAGHLEIVEV 131
Query: 247 LLEIDSNL 254
LL+ +++
Sbjct: 132 LLKYGADV 139
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA-VKGQNEDIVLELIRPDP 320
GK +L AAR G + V+ L++ D G+T LH+A +KG E ++E++
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLE--IVEVLLKHG 70
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 380
+ + D G+T LH+A G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 71 ADVNAADKMGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIV 129
Query: 381 SLLKEAGA 388
+L + GA
Sbjct: 130 EVLLKYGA 137
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 13/103 (12%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
++ K GD LHLAA G+L ++E+L A+ ++ + G TPL++AA++GH
Sbjct: 74 NAADKMGDTPLHLAALYGHL-EIVEVLLKNGAD-----VNATDTYGFTPLHLAADAGHLE 127
Query: 174 IVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
IVE +L++ A + A++ G +F ++ G+ E L E+L
Sbjct: 128 IVEVLLKY----GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 14/156 (8%)
Query: 127 AARAGNLSRV-MEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-MNL 184
AARAG V + I D N + G TPL++AA SGH IVE +L+H ++
Sbjct: 21 AARAGQDDEVRILIANGADVNAV-------DNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 185 ETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
+ A + G+ H+AA GHLE+++ LL ++ V D++ ST LH AA +GH+++V
Sbjct: 74 DAADV---YGFTPLHLAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIV 129
Query: 245 NFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
LL+ +++ GKT + G+ ++ K+
Sbjct: 130 EVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAKS 164
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 75/148 (50%), Gaps = 4/148 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ + N G T LH AA GHLE+V+ L+
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAV-DNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
D G T LH+A + +IV L++ V D G+T LH+A +G +IV LL
Sbjct: 76 ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF-DMTGSTPLHLAADEGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTEL 379
G DVN+ +K G++ D++ GN +L
Sbjct: 135 Y-GADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ D G T LH+A + +IV L++
Sbjct: 15 GKKLLE-AARAGQDDEVRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V D G T LH+A G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 73 V-DAADVYGFTPLHLAAMTGHLEIVEVLLKY-GADVNAFDMTGSTPLHLAADEGHLEIVE 130
Query: 382 LLKEAGA 388
+L + GA
Sbjct: 131 VLLKYGA 137
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ + G T LH AA +GH E+V+ L+ R
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
D G T LH+A + +IV L++ V +D G T LH+A +G +IV LL
Sbjct: 77 -DTDGWTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 135 -HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 13/125 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ + +G TPL++AA GH IVE +L+H
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNAHDDQGSTPLHLAAWIGHPEIVEVLLKH----G 70
Query: 187 ASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + AR +G+ H+AA GHLE+++ LL ++ V D T LH AA +GH+++V
Sbjct: 71 ADVNARDTDGWTPLHLAADNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIV 129
Query: 245 NFLLE 249
LL+
Sbjct: 130 EVLLK 134
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G H+AA GH E+++ LL + V D T LH AA GH+++V LL+ ++
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD 105
Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+ G T LH AA GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 106 V-NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ D +G T LH+A + +IV L++
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAH-DDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V D G T LH+A G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 73 V-NARDTDGWTPLHLAADNGHLEIVEVLLKY-GADVNAQDAYGLTPLHLAADRGHLEIVE 130
Query: 382 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
+L + HG +A + +T DI D
Sbjct: 131 VLLK--------HGADVNAQDKFGKTAFDISID 155
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 13/135 (9%)
Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
+G LHLAA G+ ++E+L A+ ++ ++ +G TPL++AA++GH IVE +
Sbjct: 46 QGSTPLHLAAWIGH-PEIVEVLLKHGAD-----VNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 179 LQHMNLETASIPARNGY--DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA 236
L++ A + A++ Y H+AA +GHLE+++ LL + V D TA +
Sbjct: 100 LKY----GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 154
Query: 237 AQGHIDVVNFLLEID 251
G+ D+ L +++
Sbjct: 155 DNGNEDLAEILQKLN 169
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 12/192 (6%)
Query: 202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN 261
A G LE LKE + +L TD TALH A + GH ++V FLL++ + +
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 73
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---- 317
G + LH AA G E+VKAL+ K ++ G T LH A +I + L+
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
PD +D+ TA+H A KG +++ LL + N + G +PL +A
Sbjct: 133 PDA-----KDHYEATAMHRAAAKGNLKMIHILLYYKA-STNIQDTEGNTPLHLACDEERV 186
Query: 378 ELFSLLKEAGAA 389
E LL GA+
Sbjct: 187 EEAKLLVSQGAS 198
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN----GYDSFHVAAKQ 204
K L ++ +Q+ T L+ A +GH IVE +LQ +P + G+ H+AA
Sbjct: 31 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAASA 84
Query: 205 GHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKT 264
G E++K LLG+ + C T LH AA++ ++ LLE +N + T
Sbjct: 85 GRDEIVKALLGKGAQVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEAT 142
Query: 265 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE--LIRPDPSV 322
+H AA G+L+++ L+ ST + D +G T LH+A +E+ V E L+ +
Sbjct: 143 AMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTPLHLAC---DEERVEEAKLLVSQGAS 198
Query: 323 LKLEDNKGNTALHIA 337
+ +E+ + T L +A
Sbjct: 199 IYIENKEEKTPLQVA 213
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 15/243 (6%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFP 218
G TPL+ A + IVE +L+H + +NG F +AA G +++LK L +
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGA 116
Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL---------AKIARNNGKTVLHSA 269
+ V D TA AA G + + FL + +N+ + R G T L A
Sbjct: 117 D-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 175
Query: 270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTAL-HMAVKGQNEDI--VLELIRPDPSVLKLE 326
A GH+EV+K L+ + + D G+ AL H + + D+ + L+ + + +
Sbjct: 176 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 235
Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
+G T L +A++K +V+ LL E I++N + G++ L +A +L ++ LL +
Sbjct: 236 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 295
Query: 387 GAA 389
GA+
Sbjct: 296 GAS 298
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 275 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNT 332
+++V+ L+ + F+ ++ G T LH AV+ EDIV L+R DP + K G T
Sbjct: 38 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK---KNGAT 94
Query: 333 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
+A G ++++ LS +G DVN + G + A G + L + GA
Sbjct: 95 PFILAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 149
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
S+G R + L AV+ ++ D+V +L+ +V E+ G T LH A++ R IV
Sbjct: 16 SSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 75
Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
LL G D K G +P +A G+ +L L GA
Sbjct: 76 ELLLR-HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGA 116
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 14/195 (7%)
Query: 186 TASIPARNGYDSFHV---AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHID 242
T+S R + H+ A + ++++++LL N+ + T LH A D
Sbjct: 14 TSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED 73
Query: 243 VVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA-LH 301
+V LL ++ + + NG T AA G ++++K +SK D G TA +
Sbjct: 74 IVELLLRHGADPV-LRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFME 131
Query: 302 MAVKGQNEDIVLELIRPDPSVLKL---EDNK-----GNTALHIAIKKGRTQIVRCLLSIE 353
AV G+ + + R L+ ED + G TAL A +KG ++++ LL
Sbjct: 132 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 191
Query: 354 GIDVNSLNKAGESPL 368
G DVN+ + G + L
Sbjct: 192 GADVNACDNMGRNAL 206
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 7/143 (4%)
Query: 153 SKKNQE-----GETPLYVAAESGHALIVEEMLQHMNLETASIP--ARNGYDSFHVAAKQG 205
+K++QE G T L AAE GH +++ +L M + + RN +++
Sbjct: 157 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 216
Query: 206 HLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTV 265
+E + LL + V T L A + H+ +V LLE + ++GKT
Sbjct: 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 276
Query: 266 LHSAARMGHLEVVKALVSKDPST 288
L A + ++ + L + ST
Sbjct: 277 LLLAVELKLKKIAELLCKRGAST 299
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 15/243 (6%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFP 218
G TPL+ A + IVE +L+H + +NG F +AA G +++LK L +
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL---------AKIARNNGKTVLHSA 269
+ V D TA AA G + + FL + +N+ + R G T L A
Sbjct: 97 D-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155
Query: 270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTAL-HMAVKGQNEDI--VLELIRPDPSVLKLE 326
A GH+EV+K L+ + + D G+ AL H + + D+ + L+ + + +
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215
Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
+G T L +A++K +V+ LL E I++N + G++ L +A +L ++ LL +
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275
Query: 387 GAA 389
GA+
Sbjct: 276 GAS 278
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 275 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNT 332
+++V+ L+ + F+ ++ G T LH AV+ EDIV L+R DP + K G T
Sbjct: 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK---KNGAT 74
Query: 333 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
+A G ++++ LS +G DVN + G + A G + L + GA
Sbjct: 75 PFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 11/177 (6%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
A + ++++++LL N+ + T LH A D+V LL ++ + +
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKK 70
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA-LHMAVKGQNEDIVLELIRPD 319
NG T AA G ++++K +SK D G TA + AV G+ + + R
Sbjct: 71 NGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129
Query: 320 PSVLKL---EDNK-----GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 368
L+ ED + G TAL A +KG ++++ LL G DVN+ + G + L
Sbjct: 130 NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 7/143 (4%)
Query: 153 SKKNQE-----GETPLYVAAESGHALIVEEMLQHMNLETASIP--ARNGYDSFHVAAKQG 205
+K++QE G T L AAE GH +++ +L M + + RN +++
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196
Query: 206 HLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTV 265
+E + LL + V T L A + H+ +V LLE + ++GKT
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256
Query: 266 LHSAARMGHLEVVKALVSKDPST 288
L A + ++ + L + ST
Sbjct: 257 LLLAVELKLKKIAELLCKRGAST 279
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 12/192 (6%)
Query: 202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN 261
A G LE LKE + +L TD TALH A + GH ++V FLL++ + +
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 72
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---- 317
G + LH AA G E+VKAL+ K ++ G T LH A +I + L+
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
PD +D+ TA+H A KG +++ LL + N + G +PL +A
Sbjct: 132 PDA-----KDHYEATAMHRAAAKGNLKMIHILLYYKA-STNIQDTEGNTPLHLACDEERV 185
Query: 378 ELFSLLKEAGAA 389
E LL GA+
Sbjct: 186 EEAKLLVSQGAS 197
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN----GYDSFHVAAKQ 204
K L ++ +Q+ T L+ A +GH IVE +LQ +P + G+ H+AA
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAASA 83
Query: 205 GHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKT 264
G E++K LLG+ + C T LH AA++ ++ LLE +N + T
Sbjct: 84 GRDEIVKALLGKGAQVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEAT 141
Query: 265 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE--LIRPDPSV 322
+H AA G+L+++ L+ ST + D +G T LH+A +E+ V E L+ +
Sbjct: 142 AMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTPLHLAC---DEERVEEAKLLVSQGAS 197
Query: 323 LKLEDNKGNTALHIA 337
+ +E+ + T L +A
Sbjct: 198 IYIENKEEKTPLQVA 212
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 8/156 (5%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
L AA G D V L+ +N A + + G T LH AA+ GHLE+V+ L+
Sbjct: 18 LLEAARAGQDDEVRILM---ANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
D G T LH+A + +IV L++ V +D +G T LH+A G +IV L
Sbjct: 75 -AWDNYGATPLHLAADNGHLEIVEVLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
L G DVN+ +K G++ D++ GN +L +L++
Sbjct: 133 LKY-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA+ G + ++ L+ + V TD T LH AA GH+++V LL+ +++ N
Sbjct: 21 AARAGQDDEVRILMANGAD-VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV-NAWDN 78
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
G T LH AA GHLE+V+ L+ + D +G T LH+A + +IV L++
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLKHGADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
V +D G TA I+I G + L
Sbjct: 138 DV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 13/134 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA+ G+L ++E+L A+ ++ + G TPL++AA++GH IVE +L
Sbjct: 47 GHTPLHLAAKTGHL-EIVEVLLKYGAD-----VNAWDNYGATPLHLAADNGHLEIVEVLL 100
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
+H A + A++ G+ H+AA GHLE+++ LL ++ V D TA +
Sbjct: 101 KH----GADVNAKDYEGFTPLHLAAYDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISID 155
Query: 238 QGHIDVVNFLLEID 251
G+ D+ L +++
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ TD G T LH+A K + +IV L++
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V DN G T LH+A G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 73 V-NAWDNYGATPLHLAADNGHLEIVEVLLK-HGADVNAKDYEGFTPLHLAAYDGHLEIVE 130
Query: 382 LLKEAGA 388
+L + GA
Sbjct: 131 VLLKYGA 137
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L A GQ++++ ++ + + + D G+T LH+A K G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY-GA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH 394
DVN+ + G +PL +A G+ E+ +L + GA ++KD+
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDY 111
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 65.5 bits (158), Expect = 8e-11, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ ++ A + G+T LH AA +GHLE+V+ L+
Sbjct: 6 LLEAARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-A 63
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
D G T LH+A + +IV L++ V +D G T L++A G +IV LL
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLLK 122
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
G DVN+ +K G++ D++ +GN +L +L+
Sbjct: 123 -HGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 10/125 (8%)
Query: 193 NGYDSF-----HVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
N YD + H+AA GHLE+++ LL + V D + +T LH AA+ GH+++V L
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD-VNAVDTNGTTPLHLAASLGHLEIVEVL 87
Query: 248 LEIDSNL-AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG 306
L+ +++ AK A G T L+ AA GHLE+V+ L+ + DK G+TA +++
Sbjct: 88 LKYGADVNAKDA--TGITPLYLAAYWGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDI 144
Query: 307 QNEDI 311
NED+
Sbjct: 145 GNEDL 149
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ D G+T LHMA + +IV L+R
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGADAN-AYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V ++ N G T LH+A G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 61 VNAVDTN-GTTPLHLAASLGHLEIVEVLLKY-GADVNAKDATGITPLYLAAYWGHLEIVE 118
Query: 382 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQ 418
+L + HG +A + +T DI D+ ++
Sbjct: 119 VLLK--------HGADVNAQDKFGKTAFDISIDIGNE 147
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
AARAG V ++ + DAN + G TPL++AA GH IVE +L+ N
Sbjct: 9 AARAGQDDEVRILMANGADAN-------AYDHYGRTPLHMAAAVGHLEIVEVLLR--NGA 59
Query: 186 TASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVN 245
+ NG H+AA GHLE+++ LL ++ V D + T L+ AA GH+++V
Sbjct: 60 DVNAVDTNGTTPLHLAASLGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIVE 118
Query: 246 FLLE 249
LL+
Sbjct: 119 VLLK 122
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L ++E+L A+ ++ K+ G TPLY+AA GH IVE +L
Sbjct: 68 GTTPLHLAASLGHL-EIVEVLLKYGAD-----VNAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
+H A + A++ G +F ++ G+ E L E+L
Sbjct: 122 KH----GADVNAQDKFGKTAFDISIDIGN-EDLAEIL 153
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G H+ GHLE+++ LL ++ V +D S T LH AA +GH+++V LL+ ++
Sbjct: 47 GITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+ + G T LH AA GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 106 VNAMDY-QGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 8/156 (5%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
L AA G D V L+ +N A + N+ G T LH GHLE+++ L+
Sbjct: 18 LLEAARAGQDDEVRILM---ANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
+DK G T LH+A + +IV L++ V + D +G T LH+A + G +IV L
Sbjct: 75 -ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM-DYQGYTPLHLAAEDGHLEIVEVL 132
Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
L G DVN+ +K G++ D++ GN +L +L++
Sbjct: 133 LKY-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ D G T LH+ V + +I+ L++
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVN-ANDWFGITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V D G T LH+A +G +IV LL G DVN+++ G +PL +A + G+ E+
Sbjct: 73 V-NASDKSGWTPLHLAAYRGHLEIVEVLLKY-GADVNAMDYQGYTPLHLAAEDGHLEIVE 130
Query: 382 LLKEAGA 388
+L + GA
Sbjct: 131 VLLKYGA 137
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 13/130 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHL G+L ++E+L A+ ++ ++ G TPL++AA GH IVE +L++
Sbjct: 51 LHLVVNNGHL-EIIEVLLKYAAD-----VNASDKSGWTPLHLAAYRGHLEIVEVLLKY-- 102
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
A + A + GY H+AA+ GHLE+++ LL ++ V D TA + G+
Sbjct: 103 --GADVNAMDYQGYTPLHLAAEDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 242 DVVNFLLEID 251
D+ L +++
Sbjct: 160 DLAEILQKLN 169
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 13/103 (12%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
++ K G LHLAA G+L ++E+L A+ ++ + +G TPL++AAE GH
Sbjct: 74 NASDKSGWTPLHLAAYRGHL-EIVEVLLKYGAD-----VNAMDYQGYTPLHLAAEDGHLE 127
Query: 174 IVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
IVE +L++ A + A++ G +F ++ G+ E L E+L
Sbjct: 128 IVEVLLKY----GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 165
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN 261
A G L+ LKE + +L TD TALH A + GH ++V FLL++ + +
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 72
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---- 317
G + LH AA G E+VKAL+ K ++ G T LH A +I + L+
Sbjct: 73 GWSPLHIAASAGRDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 371
PD +D+ TA+H A KG ++V LL + N + G +PL +A
Sbjct: 132 PDA-----KDHYDATAMHRAAAKGNLKMVHILLFYKA-STNIQDTEGNTPLHLA 179
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 13/160 (8%)
Query: 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN----GYDSFHVAAKQ 204
K L ++ +Q+ T L+ A +GH IVE +LQ +P + G+ H+AA
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAASA 83
Query: 205 GHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKT 264
G E++K LL + ++ C T LH AA++ ++ LLE +N + T
Sbjct: 84 GRDEIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDAT 141
Query: 265 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV 304
+H AA G+L++V L+ ST + D +G T LH+A
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLAC 180
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN 261
A G L+ LKE + +L TD TALH A + GH ++V FLL++ + +
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 72
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---- 317
G + LH AA G E+VKAL+ K ++ G T LH A +I + L+
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 371
PD +D+ TA+H A KG ++V LL + N + G +PL +A
Sbjct: 132 PDA-----KDHYDATAMHRAAAKGNLKMVHILLFYKA-STNIQDTEGNTPLHLA 179
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 13/160 (8%)
Query: 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN----GYDSFHVAAKQ 204
K L ++ +Q+ T L+ A +GH IVE +LQ +P + G+ H+AA
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAASA 83
Query: 205 GHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKT 264
G E++K LL + ++ C T LH AA++ ++ LLE +N + T
Sbjct: 84 GXDEIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDAT 141
Query: 265 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV 304
+H AA G+L++V L+ ST + D +G T LH+A
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLAC 180
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 29/182 (15%)
Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
TALH A ++D+V FL+E +N+ + N G LH+AA G+L++ + L+S+ G
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANINQ-PDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 290 FRTDKKGQTALHMAVKG------QNE----DIVLELIRPDPSVLKLEDNK---------- 329
+ +G T L +A + QNE + +E R + + L D +
Sbjct: 134 A-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192
Query: 330 ------GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
G TALH+A KG T++++ L+ DVN + G +PL A G E +L
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Query: 384 KE 385
E
Sbjct: 252 VE 253
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 34/209 (16%)
Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
+G + H A +++++K L+ N + D LH AA+ G++D+ +L+ +
Sbjct: 72 DGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGA 130
Query: 253 NLAKIARNNGKTVLH----------------------SAARMGH----LEVVKALVSKDP 286
++ + + G T L AAR L + ++
Sbjct: 131 HVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 287 STGFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 345
R K G TALH+A KG E VL+L+ + ++D G T LH A G+ +
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTE--VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEA 247
Query: 346 VRCLLSIEGI-DVNSLNKAGESPLDVAEK 373
R L +E + D+ ++NK G++ DVA++
Sbjct: 248 CRIL--VENLCDMEAVNKVGQTAFDVADE 274
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 264 TVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVL 323
V +A G E V L+ + + + G TALH A N D+V L+ ++
Sbjct: 42 AVFLAACSSGDTEEVLRLLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVENGANIN 100
Query: 324 KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 370
+ DN+G LH A G I L+S +G V ++N G++PLD+
Sbjct: 101 Q-PDNEGWIPLHAAASCGYLDIAEYLIS-QGAHVGAVNSEGDTPLDI 145
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 39/198 (19%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E N + P G + LH AA G L + E L S A+ + N EG+TPL +A
Sbjct: 94 ENGANINQPDNEGWIPLHAAASCGYLD-IAEYLISQGAH-----VGAVNSEGDTPLDIAE 147
Query: 168 ESGHALIVEEML--QHMNLETASIP-----------------------ARNGYDSFHVAA 202
E +++ + Q +++E A A++G + HVAA
Sbjct: 148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA 207
Query: 203 KQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN- 261
+G+ EVLK LL + V D T LH AA G + L+E NL + N
Sbjct: 208 AKGYTEVLK-LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE---NLCDMEAVNK 263
Query: 262 -GKTVLHSAAR--MGHLE 276
G+T A +G+LE
Sbjct: 264 VGQTAFDVADEDILGYLE 281
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ +G T LH AA GHLE+V+ L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
D G T LH+A + +IV L++ V + D G+T LH+A G +IV LL
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 135 -HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ TD G T LH+A + +IV L++
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V + D G+T LH+A G +IV LL G DVN+++ G++PL +A +G+ E+
Sbjct: 73 VNAI-DIXGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVE 130
Query: 382 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
+L + HG +A + +T DI D
Sbjct: 131 VLLK--------HGADVNAQDKFGKTAFDISID 155
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ + G TPL++AA GH IVE +L+H
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNATDASGLTPLHLAATYGHLEIVEVLLKH----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A + G H+AA GHLE+++ LL + V D T LH AA GH+++V
Sbjct: 71 ADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 245 NFLLE 249
LL+
Sbjct: 130 EVLLK 134
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L ++E+L A+ ++ + G+TPL++AA GH IVE +L
Sbjct: 80 GSTPLHLAALIGHL-EIVEVLLKHGAD-----VNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
+H A + A++ G +F ++ G+ E L E+L
Sbjct: 134 KH----GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ +G T LH AA GHLE+V+ L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
D G T LH+A + +IV L++ V + D G+T LH+A G +IV LL
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 135 -HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ TD G T LH+A + +IV L++
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V + D G+T LH+A G +IV LL G DVN+++ G++PL +A +G+ E+
Sbjct: 73 VNAI-DIMGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVE 130
Query: 382 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
+L + HG +A + +T DI D
Sbjct: 131 VLLK--------HGADVNAQDKFGKTAFDISID 155
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ + G TPL++AA GH IVE +L+H
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNATDASGLTPLHLAATYGHLEIVEVLLKH----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A + G H+AA GHLE+++ LL + V D T LH AA GH+++V
Sbjct: 71 ADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 245 NFLLE 249
LL+
Sbjct: 130 EVLLK 134
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L ++E+L A+ ++ + G+TPL++AA GH IVE +L
Sbjct: 80 GSTPLHLAALIGHL-EIVEVLLKHGAD-----VNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
+H A + A++ G +F ++ G+ E L E+L
Sbjct: 134 KH----GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AAA G D V L+ +++ +NG T LH AA G LE+V+ L+ K+ +
Sbjct: 10 LLEAAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNA 67
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
+D G T LH+A + +IV L++ V D G T LH+A G+ +IV LL
Sbjct: 68 SDSAGITPLHLAAYDGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
G DVN+ + G + D++ G +L +L+
Sbjct: 127 -HGADVNAQDALGLTAFDISINQGQEDLAEILQ 158
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L +AA G + V+ L++ TD G T LH+A +IV E++ + +
Sbjct: 7 GKKLLEAAA-AGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEIV-EVLLKNGA 63
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
+ D+ G T LH+A G +IV LL G DVN+ ++AG +PL +A G E+
Sbjct: 64 DVNASDSAGITPLHLAAYDGHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQLEIVE 122
Query: 382 LLKEAGA 388
+L + GA
Sbjct: 123 VLLKHGA 129
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
V TD + T LH AAA G +++V LL+ +++ + + G T LH AA GHLE+V+
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEV 90
Query: 281 LVSKDPSTGFRTDKKGQTALHM-AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 339
L+ D+ G T LH+ A+ GQ E ++E++ + + +D G TA I+I
Sbjct: 91 LLKHGADVN-AYDRAGWTPLHLAALSGQLE--IVEVLLKHGADVNAQDALGLTAFDISIN 147
Query: 340 KGRTQIVRCL 349
+G+ + L
Sbjct: 148 QGQEDLAEIL 157
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA G L ++E+L A+ ++ + G TPL++AA GH IVE +L+H
Sbjct: 43 LHLAAANGQL-EIVEVLLKNGAD-----VNASDSAGITPLHLAAYDGHLEIVEVLLKH-- 94
Query: 184 LETASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
A + A R G+ H+AA G LE+++ LL + V D TA + QG
Sbjct: 95 --GADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD-VNAQDALGLTAFDISINQGQE 151
Query: 242 DVVNFL 247
D+ L
Sbjct: 152 DLAEIL 157
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLG 215
+ G TPL++AA +G IVE +L++ AS A G H+AA GHLE+++ LL
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA--GITPLHLAAYDGHLEIVEVLLK 93
Query: 216 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE 249
+ V D + T LH AA G +++V LL+
Sbjct: 94 HGAD-VNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
+G T LH+AA+ GH E VK L+SK R+ K G T LH+A K + +IV +L+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIV-KLLLAKG 65
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS 359
+ + GNT H+A K G +IV+ LL +G DVN+
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVK-LLDAKGADVNA 103
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 294 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 353
K G T LH A K + + V +L+ V GNT LH+A K G +IV+ LL+ +
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA-K 64
Query: 354 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
G DVN+ +K G +P +A+K G+ E+ LL GA
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 330 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA- 388
GNT LH A K G + V+ LLS +G DVN+ +K G +PL +A K G+ E+ LL GA
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 389 --AHSKDHGKPPSATKQ 403
A SKD P K+
Sbjct: 68 VNARSKDGNTPEHLAKK 84
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 191 ARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI 250
+++G H AAK GH E +K+LL + + V +T LH AA GH ++V LL
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 251 DSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 292
+++ ++ +G T H A + GH E+VK L +K R+
Sbjct: 65 GADVNARSK-DGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 24/104 (23%)
Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSK------KNQEGETPLYVAAESGH 171
K G+ LH AA+ G+ A E K LLSK ++++G TPL++AA++GH
Sbjct: 7 KDGNTPLHNAAKNGH------------AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH 54
Query: 172 ALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKEL 213
A IV+ +L + A + AR +G H+A K GH E++K L
Sbjct: 55 AEIVKLLLA----KGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKEL 213
+++G TPL+ AA++GHA V+++L + A + AR +G H+AAK GH E++K L
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 214 LGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
L + + V +T H A GH ++V L
Sbjct: 62 LAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLL 94
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 4/154 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ +G T LH AA GHLE+V+ L+ K+ +
Sbjct: 18 LLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLL-KNGADVNA 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
D G T L +A + +IV E++ + + + D +G+T LH+A G +IV LL
Sbjct: 76 VDHAGMTPLRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 135 -NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ ++ G TPL++AA +GH IVE +L+ N
Sbjct: 21 AARAGRDDEV-RILMANGAD-----VNAEDASGWTPLHLAAFNGHLEIVEVLLK--NGAD 72
Query: 187 ASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNF 246
+ G +AA GHLE+++ LL + V D+ T LH AA GH+++V
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 247 LLE 249
LL+
Sbjct: 132 LLK 134
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ D G T LH+A + +IV L++
Sbjct: 15 GKKLLE-AARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V + D+ G T L +A G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 73 VNAV-DHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVE 130
Query: 382 LLKEAGA 388
+L + GA
Sbjct: 131 VLLKNGA 137
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G L LAA G+L V +L++ A D+ EG TPL++AA GH IVE +L
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNANDM------EGHTPLHLAAMFGHLEIVEVLL 133
Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL 214
+ N + + G +F ++ G+ E L E+L
Sbjct: 134 K--NGADVNAQDKFGKTAFDISIDNGN-EDLAEIL 165
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ D+KG T LH+A + +IV L++
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVN-ANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V DN G+T LH+A G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 73 V-NAHDNDGSTPLHLAALFGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 382 LLKE 385
+L++
Sbjct: 131 ILQK 134
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA+ G + ++ L+ + V D +T LH AA H+++V LL+ +++ N
Sbjct: 21 AARAGQDDEVRILMANGAD-VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDN 78
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+G T LH AA GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L A GQ++++ ++ + + + D KGNT LH+A +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-HGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
DVN+ + G +PL +A G+ E+ +L + HG +A + +T DI D
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ +++G TPL++AA+ H IVE +L+H
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNANDRKGNTPLHLAADYDHLEIVEVLLKH----G 70
Query: 187 ASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A +G H+AA GHLE+++ LL + V D TA + G+ D+
Sbjct: 71 ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLA 129
Query: 245 NFLLEID 251
L +++
Sbjct: 130 EILQKLN 136
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 13/99 (13%)
Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
++G+ LHLAA +L ++E+L A+ ++ + +G TPL++AA GH IVE
Sbjct: 45 RKGNTPLHLAADYDHL-EIVEVLLKHGAD-----VNAHDNDGSTPLHLAALFGHLEIVEV 98
Query: 178 MLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
+L+H A + A++ G +F ++ G+ E L E+L
Sbjct: 99 LLKH----GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 132
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L +AAA+G ++ + LL+ + N+ G+T L ++G+ E+ + L+ + + +
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 -DRTGNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
+V N G++ D+A G E+ SL++ GA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAA 167
R N D + G+ +H AARAG L + +L+ D N ++ EG PL++AA
Sbjct: 59 RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVN-------IEDNEGNLPLHLAA 111
Query: 168 ESGHALIVEEMLQH 181
+ GH +VE +++H
Sbjct: 112 KEGHLRVVEFLVKH 125
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
R G H AA+ G L+ L+ LL EF V D + LH AA +GH+ VV FL++
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
++ + G T A G EVV +
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L +AAA+G ++ + LL+ + N+ G+T L ++G+ E+ + L+ + + +
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 -DRTGFAVIHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
+V N G++ D+A G E+ SL++ GA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
R G+ H AA+ G L+ L+ LL EF V D + LH AA +GH+ VV FL++
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
++ + G T A G EVV +
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAA 167
R N D + G +H AARAG L + +L+ D N ++ EG PL++AA
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN-------IEDNEGNLPLHLAA 111
Query: 168 ESGHALIVEEMLQH 181
+ GH +VE +++H
Sbjct: 112 KEGHLRVVEFLVKH 125
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 21/216 (9%)
Query: 161 TPLYVAAESGHALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGHLEVLKELL--G 215
+P++ AA GH L + ++ +N+ TA + H A GHL +K LL G
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITA-----DHVSPLHEACLGGHLSCVKILLKHG 59
Query: 216 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 275
N V T D T L A G D VN LL+ +++ ++ + +H AAR GH+
Sbjct: 60 AQVNGV-TADWH--TPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHV 114
Query: 276 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG-NTAL 334
E V +L++ + + G T L++A + Q V +L+ S + KG ++ L
Sbjct: 115 ECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLE---SGADVNQGKGQDSPL 170
Query: 335 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 370
H A+ + ++ + CLL G D + N G+ P+++
Sbjct: 171 H-AVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 21/216 (9%)
Query: 161 TPLYVAAESGHALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGHLEVLKELL--G 215
+P++ AA GH L + ++ +N+ TA + H A GHL +K LL G
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITA-----DHVSPLHEACLGGHLSCVKILLKHG 115
Query: 216 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 275
N V T D T L A G D VN LL+ +++ ++ + +H AAR GH+
Sbjct: 116 AQVNGV-TADWH--TPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHV 170
Query: 276 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG-NTAL 334
E V +L++ + + G T L++A + Q V +L+ S + KG ++ L
Sbjct: 171 ECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLE---SGADVNQGKGQDSPL 226
Query: 335 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 370
H ++ ++ CLL G D + N G+ P+++
Sbjct: 227 HAVVRTASEELA-CLLMDFGADTQAKNAEGKRPVEL 261
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L +AAA+G ++ + LL+ + N+ G+T L ++G+ E+ + L+ + + +
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 -DRTGFAVIHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
+V N G++ D+A G E+ SL++ GA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAE 168
R N D + G +H AARAG ++ LQ+ N+A ++ ++ EG PL++AA+
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAG----FLDTLQTLLENQAD--VNIEDNEGNLPLHLAAK 112
Query: 169 SGHALIVEEMLQH 181
GH +VE +++H
Sbjct: 113 EGHLRVVEFLVKH 125
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL 214
K++ G ++ AA +G ++ +L+ N +I G H+AAK+GHL V++ L+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLE--NQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 215 GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
+ V + TA A G +VV+ +
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLG 215
N GET L++A+ G VE +LQ N ++ G+ H A GHL+V+ ELL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVV-ELLL 63
Query: 216 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLL 248
+ LV TT + LH AA GH+D+V LL
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
RG+ LH+A+ G++ V +LQ+ KD G TPL+ A GH +VE +
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKD------HAGWTPLHEACNHGHLKVVELL 62
Query: 179 LQHMNLETASIPARNGYDS---FHVAAKQGHLEVLKELL 214
LQH L + GY + H AAK GH++++K LL
Sbjct: 63 LQHKALVNTT-----GYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 194 GYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
G H+A+ +G + ++ LL G PN+ D + T LH A GH+ VV LL+
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVS 283
+ + N + LH AA+ GH+++VK L+S
Sbjct: 67 ALVNTTGYQN-DSPLHDAAKNGHVDIVKLLLS 97
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 292 TDKKGQTALHMA-VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
T+ +G+T LH+A +KG + E + + S ++D+ G T LH A G ++V LL
Sbjct: 6 TNHRGETLLHIASIKGDIPSV--EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS 391
+ + VN+ +SPL A K G+ ++ LL GA+ +
Sbjct: 64 QHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 260 NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 317
+ G+T+LH A+ G + V+ L+ DP+ D G T LH A + +V EL+
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVV-ELLL 63
Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE 372
+++ + ++ LH A K G IV+ LLS G N++N G P+D +
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTD 117
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH 181
LH A G+L V +LQ K L++ + ++PL+ AA++GH IV+ +L +
Sbjct: 47 LHEACNHGHLKVVELLLQH------KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L +AAA+G ++ + LL+ + N+ G+T L ++G+ E+ + L+ + + +
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 -DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
+V N G++ D+A G E+ SL++ GA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
R G+ H AA+ G L+ L+ LL EF V D + LH AA +GH+ VV FL++
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
++ + G T A G EVV +
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAA 167
R N D + G +H AARAG L + +L+ D N ++ EG PL++AA
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-------IEDNEGNLPLHLAA 111
Query: 168 ESGHALIVEEMLQH 181
+ GH +VE +++H
Sbjct: 112 KEGHLRVVEFLVKH 125
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L +AAA+G ++ + LL+ + N+ G+T L ++G+ E+ + L+ + + +
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 -DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
+V N G++ D+A G E+ SL++ GA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
R G+ H AA+ G L+ L+ LL EF V D + LH AA +GH+ VV FL++
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
++ + G T A G EVV +
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAA 167
R N D + G +H AARAG L + +L+ D N ++ EG PL++AA
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-------IEDNEGNLPLHLAA 111
Query: 168 ESGHALIVEEMLQH 181
+ GH +VE +++H
Sbjct: 112 KEGHLRVVEFLVKH 125
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 133/325 (40%), Gaps = 75/325 (23%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AAR+GN ++M +L + N + TPL++AA IV+ +LQH
Sbjct: 31 AARSGNEEKLMALLTPLNVN-----CHASDGRKSTPLHLAAGYNRVRIVQLLLQH----G 81
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A++ G H A GH EV ELL + V DL T LH AA++ ++V
Sbjct: 82 ADVHAKDKGGLVPLHNACSYGHYEV-TELLLKHGACVNAMDLWQFTPLHEAASKNRVEVC 140
Query: 245 NFLLEIDSNLAKIARNNGKTVL------------------HS---AARMGHLEVVKALVS 283
+ LL ++ + +GK+ + HS AAR L VK ++
Sbjct: 141 SLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA 199
Query: 284 KDPSTGFRTDKKGQTALHMAV----------------KGQN------------------- 308
+ F+ + +TALH AV KG N
Sbjct: 200 LE-IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA 258
Query: 309 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 368
+ V+E++ + + D+ G TALH A G Q R LLS G D + ++ G +
Sbjct: 259 HNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIISLQGFT-- 315
Query: 369 DVAEKLGNTELFSLLKEAGAAHSKD 393
A ++GN + +L E+ + D
Sbjct: 316 --AAQMGNEAVQQILSESTPMRTSD 338
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 280 ALVSKDPST-GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 338
AL DPS T + + L A + NE+ ++ L+ P D + +T LH+A
Sbjct: 7 ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 339 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
R +IV+ LL G DV++ +K G PL A G+ E+ LL + GA
Sbjct: 67 GYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 263 KTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 322
K L AAR G+ E + AL++ +D + T LH+A G N +++L+ +
Sbjct: 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA-GYNRVRIVQLLLQHGAD 83
Query: 323 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 382
+ +D G LH A G ++ LL G VN+++ +PL A E+ SL
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAMDLWQFTPLHEAASKNRVEVCSL 142
Query: 383 LKEAGA 388
L GA
Sbjct: 143 LLSHGA 148
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV--SKDP 286
S ++H AAQG +D + L NL G T L A+ G +E V+ L+ DP
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
K+ ++AL +A G DIV L+ D + + D G T L A++ + V
Sbjct: 63 HI---LAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCV 118
Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLG 375
LL+ G D+ + +G +P+D+A LG
Sbjct: 119 EALLA-RGADLTTEADSGYTPMDLAVALG 146
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAK 256
S H A QG L+ LKE L + NLV D T L A+A G I+ V FLLE ++
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 257 IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 316
+A+ ++ L A+ G+ ++V L+ +D D G T L AV+G + V E +
Sbjct: 65 LAKER-ESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCV-EAL 121
Query: 317 RPDPSVLKLEDNKGNTALHIAIKKGRTQI 345
+ L E + G T + +A+ G ++
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKV 150
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ D+ G T LH+A + + +IV L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V EDN G T LH+A +G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 73 V-NAEDNFGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 382 LLK 384
+L+
Sbjct: 131 ILQ 133
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
V D T LH AA GH+++V LL+ +++ N G T LH AA GHLE+V+
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIVEV 98
Query: 281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
L+ + DK G+TA +++ NED+
Sbjct: 99 LLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ +++G TPL++AA+ GH IVE +L++
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNALDEDGLTPLHLAAQLGHLEIVEVLLKY----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A + G H+AA +GHLE+++ LL + V D TA + G+ D+
Sbjct: 71 ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLA 129
Query: 245 NFL 247
L
Sbjct: 130 EIL 132
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L A GQ++++ ++ + + + D G T LH+A + G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY-GA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
DVN+ + G +PL +A G+ E+ +L + HG +A + +T DI D
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVV 278
V D + T LH AA +GH+++V LL+ D N + I G+T LH AA +GHLE+V
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW---GRTPLHLAATVGHLEIV 96
Query: 279 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+ L+ + DK G+TA +++ NED+
Sbjct: 97 EVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L A R G + V+ L++ D G T LH+A K + +IV L++
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V D G T LH+A G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 73 V-NASDIWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 382 LLKE 385
+L++
Sbjct: 131 ILQK 134
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L GQ++++ ++ + + + D+ G T LH+A K+G +IV LL G
Sbjct: 15 GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
DVN+ + G +PL +A +G+ E+ +L E GA
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
A RAG V ++ + D N D G TPL++AA+ GH IVE +L+H
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDD-------AGVTPLHLAAKRGHLEIVEVLLKH---- 69
Query: 186 TASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
A + A + G H+AA GHLE+++ LL E+ V D TA + G+ D+
Sbjct: 70 GADVNASDIWGRTPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 244 VNFLLEID 251
L +++
Sbjct: 129 AEILQKLN 136
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G H+AAK+GHLE+++ LL + V +D+ T LH AA GH+++V LLE ++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 254 L 254
+
Sbjct: 106 V 106
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA+ G+L V +L+ A D+ G TPL++AA GH IVE +L++
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIW------GRTPLHLAATVGHLEIVEVLLEY-- 102
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 103 --GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 132
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Query: 115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALI 174
S D QL AA+AG++ V ++ N +D+ +++ TPL+ AA +
Sbjct: 5 SGNSEADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSV 59
Query: 175 VEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTAL 232
VE +LQH A + A++ G H A GH EV ELL + +V DL T L
Sbjct: 60 VEYLLQH----GADVHAKDKGGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPL 114
Query: 233 HTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
H AAA+G ++ LL+ ++ K R +G T L
Sbjct: 115 HEAAAKGKYEICKLLLQHGADPTKKNR-DGNTPL 147
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G ++ V L + S + T LH AA + VV+ L+ +
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 73
Query: 292 TDKKGQTALHMAVK-GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
DK G LH A G E V EL+ +V+ + D T LH A KG+ +I + LL
Sbjct: 74 -DKGGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 130
Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
G D N+ G +PLD+ K G+T++ LL+ A
Sbjct: 131 Q-HGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 166
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV--SKDP 286
S ++H AAQG +D + L NL G T L A+ G +E V+ L+ DP
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
K+ ++AL +A G DIV L+ D + + D G T L A+ + V
Sbjct: 63 HI---LAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVHGNHVKCV 118
Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLG 375
LL+ G D+ + +G +P+D+A LG
Sbjct: 119 EALLA-RGADLTTEADSGYTPMDLAVALG 146
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Query: 197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAK 256
S H A QG L+ LKE L + NLV D T L A+A G I+ V FLLE ++
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 257 IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 316
+A+ ++ L A+ G+ ++V L+ +D D G T L AV G + V E +
Sbjct: 65 LAKER-ESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVHGNHVKCV-EAL 121
Query: 317 RPDPSVLKLEDNKGNTALHIAIKKGRTQI 345
+ L E + G T + +A+ G ++
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKV 150
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
D QL AA+AG++ V ++ N +D+ +++ TPL+ AA +VE +L
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSVVEYLL 62
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
QH A + A++ G H A GH EV ELL + +V DL T LH AAA
Sbjct: 63 QH----GADVHAKDKGGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAA 117
Query: 238 QGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
+G ++ LL+ ++ K R +G T L
Sbjct: 118 KGKYEICKLLLQHGADPTKKNR-DGNTPL 145
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G ++ V L + S + T LH AA + VV+ L+ +
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 292 TDKKGQTALHMAVK-GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
DK G LH A G E V EL+ +V+ + D T LH A KG+ +I + LL
Sbjct: 72 -DKGGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128
Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
G D N+ G +PLD+ K G+T++ LL+ A
Sbjct: 129 Q-HGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
V D + T LH AA +GH+++V LL+ +++ + + G+T LH AA +GHLE+V+
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEV 98
Query: 281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
L+ + DK G+TA +++ NED+
Sbjct: 99 LLEYGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L A R G + V+ L++ D G T LH+A K + +IV L++
Sbjct: 15 GKKLL-EATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V D+ G T LH+A G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 73 V-NASDSWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 382 LLKE 385
+L++
Sbjct: 131 ILQK 134
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L GQ++++ ++ + + + D+ G T LH+A K+G +IV LL G
Sbjct: 15 GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
DVN+ + G +PL +A +G+ E+ +L E GA
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
A RAG V IL + A+ ++ + G TPL++AA+ GH IVE +L+H
Sbjct: 21 ATRAGQDDEV-RILMANGAD-----VNAMDDAGVTPLHLAAKRGHLEIVEVLLKH----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A + G H+AA GHLE+++ LL E+ V D TA + G+ D+
Sbjct: 71 ADVNASDSWGRTPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 245 NFL 247
L
Sbjct: 130 EIL 132
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 13/93 (13%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA+ G+L ++E+L A+ ++ + G TPL++AA GH IVE +L++
Sbjct: 51 LHLAAKRGHL-EIVEVLLKHGAD-----VNASDSWGRTPLHLAATVGHLEIVEVLLEY-- 102
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 103 --GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 132
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
D QL AA+AG++ V ++ N +D+ +++ TPL+ AA +VE +L
Sbjct: 12 ADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSVVEYLL 66
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
QH A + A++ G H A GH EV ELL + +V DL T LH AAA
Sbjct: 67 QH----GADVHAKDKGGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAA 121
Query: 238 QGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
+G ++ LL+ ++ K R +G T L
Sbjct: 122 KGKYEICKLLLQHGADPTKKNR-DGNTPL 149
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G ++ V L + S + T LH AA + VV+ L+ +
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 75
Query: 292 TDKKGQTALHMAVK-GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
DK G LH A G E V EL+ +V+ + D T LH A KG+ +I + LL
Sbjct: 76 -DKGGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 132
Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
G D N+ G +PLD+ K G+T++ LL+ A
Sbjct: 133 Q-HGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 168
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 198 FHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS--- 252
H+A E+ + LLG P L D +T LH A QG + V L + +
Sbjct: 49 LHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 253 --NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 310
++ K NG T LH A+ G+L +V+ LVS + G+TALH+AV QN D
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 311 IVLELIR 317
+V L++
Sbjct: 166 LVSLLLK 172
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 67/166 (40%), Gaps = 8/166 (4%)
Query: 207 LEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
+EV++++ G+ L +L T LH A ++ LL + ++ G T L
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQ-QTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPL 82
Query: 267 HSAARMGHLEVVKALVSKDPSTGFR-----TDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
H A G L V L + T+ G T LH+A IV L+
Sbjct: 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 142
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 367
V E G TALH+A+ +V LL G DVN + G SP
Sbjct: 143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSP 187
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 102 SFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGET 161
+ +G G + +D RG+ LHLA G L+ V + QSC +L N G T
Sbjct: 63 ALLGAGCDPELRDF---RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119
Query: 162 PLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVA 201
L++A+ G+ IV E+L + + + NG + H+A
Sbjct: 120 CLHLASIHGYLGIV-ELLVSLGADVNAQEPCNGRTALHLA 158
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 198 FHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS--- 252
H+A E+ + LLG P L D +T LH A QG + V L + +
Sbjct: 46 LHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 253 --NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 310
++ K NG T LH A+ G+L +V+ LVS + G+TALH+AV QN D
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 162
Query: 311 IVLELIR 317
+V L++
Sbjct: 163 LVSLLLK 169
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 67/166 (40%), Gaps = 8/166 (4%)
Query: 207 LEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
+EV++++ G+ L +L T LH A ++ LL + ++ G T L
Sbjct: 22 MEVIRQVKGDLAFLNFQNNLQ-QTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPL 79
Query: 267 HSAARMGHLEVVKALVSKDPSTGFR-----TDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
H A G L V L + T+ G T LH+A IV L+
Sbjct: 80 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 139
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 367
V E G TALH+A+ +V LL G DVN + G SP
Sbjct: 140 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSP 184
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 102 SFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGET 161
+ +G G + +D RG+ LHLA G L+ V + QSC +L N G T
Sbjct: 60 ALLGAGCDPELRDF---RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 116
Query: 162 PLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVA 201
L++A+ G+ IV E+L + + + NG + H+A
Sbjct: 117 CLHLASIHGYLGIV-ELLVSLGADVNAQEPCNGRTALHLA 155
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMGHLEVVK 279
V D + T LH AA +GH+++V LL+ +++ AR+ G+T LH AA +GHLE+V+
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ARDIWGRTPLHLAATVGHLEIVE 97
Query: 280 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
L+ + DK G+TA +++ NED+
Sbjct: 98 VLLEYGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L A R G + V+ L++ D G T LH+A K + +IV L++
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V D G T LH+A G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 73 V-NARDIWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 382 LLKE 385
+L++
Sbjct: 131 ILQK 134
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L GQ++++ ++ + + + D+ G T LH+A K+G +IV LL G
Sbjct: 15 GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
DVN+ + G +PL +A +G+ E+ +L E GA
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 15/128 (11%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
A RAG V ++ + D N D G TPL++AA+ GH IVE +L+H
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDD-------AGVTPLHLAAKRGHLEIVEVLLKH---- 69
Query: 186 TASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
A + AR+ G H+AA GHLE+++ LL E+ V D TA + G+ D+
Sbjct: 70 GADVNARDIWGRTPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 244 VNFLLEID 251
L +++
Sbjct: 129 AEILQKLN 136
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G H+AAK+GHLE+++ LL + V D+ T LH AA GH+++V LLE ++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 254 L 254
+
Sbjct: 106 V 106
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA+ G+L V +L+ A+D+ G TPL++AA GH IVE +L++
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIW------GRTPLHLAATVGHLEIVEVLLEY-- 102
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 103 --GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 132
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
V D T LH AA GH+++V LL+ +++ N G+T LH AA HLE+V+
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG-NTGRTPLHLAAWADHLEIVEV 98
Query: 281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
L+ + DK G+TA +++ NED+
Sbjct: 99 LLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L + D G T LH+A + +IV E++ + +
Sbjct: 15 GKKLLE-AARAGQDDEVRILTANGADVN-ANDYWGHTPLHLAAMLGHLEIV-EVLLKNGA 71
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
+ N G T LH+A +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 382 LLKE 385
+L++
Sbjct: 131 ILQK 134
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
L AA G D V L +N A + N+ G T LH AA +GHLE+V+ L+ K+ +
Sbjct: 18 LLEAARAGQDDEVRIL---TANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-KNGADV 73
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
T G+T LH+A + +IV L++ V +D G TA I+I G + L
Sbjct: 74 NATGNTGRTPLHLAAWADHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L A GQ++++ ++ + + + D G+T LH+A G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK-NGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
DVN+ G +PL +A + E+ +L + HG +A + +T DI D
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 13/97 (13%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L ++E+L A+ ++ G TPL++AA + H IVE +L
Sbjct: 47 GHTPLHLAAMLGHL-EIVEVLLKNGAD-----VNATGNTGRTPLHLAAWADHLEIVEVLL 100
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
+H A + A++ G +F ++ G+ E L E+L
Sbjct: 101 KH----GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 132
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 188 SIPARNGYDSFHVAAKQGHLEVLKELL-------------GEFPNLVMTTDLSCSTALHT 234
+I NG + H + + V+++LL G P ++ TAL T
Sbjct: 105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML--------TALAT 156
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 294
Q I+ V L + N+ A G+T L A G ++VVKAL++ + + D
Sbjct: 157 LKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DD 214
Query: 295 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
G TAL A + +++I L+ + L D G+TAL +A+ G+++I L S
Sbjct: 215 DGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS 271
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA----VKGQNE 309
+ IA +NG T LH + + VV+ L+ + ++ G + + + +K Q++
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD 162
Query: 310 -DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 368
+ VL+L R ++ G TAL +A+ GR +V+ LL+ E DVN + G + L
Sbjct: 163 IETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEA-DVNVQDDDGSTAL 220
Query: 369 DVAEKLGNTELFSLL 383
A + G+ E+ LL
Sbjct: 221 MCACEHGHKEIAGLL 235
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 17/196 (8%)
Query: 92 SFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDL 151
+FR + R L ++ + G+ LH + N V ++L D+ K
Sbjct: 91 TFRAMSARLLDYV--------VNIADSNGNTALHYSVSHANFPVVQQLL---DSGVCK-- 137
Query: 152 LSKKNQEGETPLYVAAESGHAL--IVEEMLQHMNLETASIPA-RNGYDSFHVAAKQGHLE 208
+ K+N+ G +P+ + A + +E +LQ L + A + G + +A G ++
Sbjct: 138 VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVD 197
Query: 209 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 268
V+K LL + V D STAL A GH ++ LL + S + +G T L
Sbjct: 198 VVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMV 256
Query: 269 AARMGHLEVVKALVSK 284
A G E+ L S+
Sbjct: 257 ALDAGQSEIASMLYSR 272
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 319 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 378
DPS L +++G TALH A+ G T+IV+ L+ G++VN+ + G +PL A N +
Sbjct: 62 DPS---LPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 379 LFSLLKEAGAA 389
+ L E+GAA
Sbjct: 118 VCKFLVESGAA 128
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 204 QGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGK 263
+G ++++ ++ E + + D TALH A GH ++V FL++ N+ A ++G
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGI-TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGW 104
Query: 264 TVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA 299
T LH AA +++V K LV + T QTA
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
++ S+P G + H A GH E++K L +F V D T LH AA+ ++ V
Sbjct: 60 VDDPSLPNDEGITALHNAVCAGHTEIVK-FLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Query: 244 VNFLLE 249
FL+E
Sbjct: 119 CKFLVE 124
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHLE 208
D S N EG T L+ A +GH IV+ ++Q +N+ A +G+ H AA +++
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD---SDGWTPLHCAASCNNVQ 117
Query: 209 VLKELL 214
V K L+
Sbjct: 118 VCKFLV 123
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 319 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 378
DPS L +++G TALH A+ G T+IV+ L+ G++VN+ + G +PL A N +
Sbjct: 62 DPS---LPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 379 LFSLLKEAGAA 389
+ L E+GAA
Sbjct: 118 VCKFLVESGAA 128
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 204 QGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGK 263
+G ++++ ++ E + + D TALH A GH ++V FL++ N+ A ++G
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGI-TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGW 104
Query: 264 TVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA 299
T LH AA +++V K LV + T QTA
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
++ S+P G + H A GH E++K L +F V D T LH AA+ ++ V
Sbjct: 60 VDDPSLPNDEGITALHNAVCAGHTEIVK-FLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Query: 244 VNFLLE 249
FL+E
Sbjct: 119 CKFLVE 124
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHLE 208
D S N EG T L+ A +GH IV+ ++Q +N+ A +G+ H AA +++
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD---SDGWTPLHCAASCNNVQ 117
Query: 209 VLKELL 214
V K L+
Sbjct: 118 VCKFLV 123
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 266 LHSAARMGHLEVVKALVSKDPSTGFRT-DKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 324
LH AA+ G+L ++ + D G DK G TAL+ A G ++DIV E + P++
Sbjct: 77 LHEAAKRGNLSWLRECL--DNRVGVNGLDKAGSTALYWACHGGHKDIV-EXLFTQPNIEL 133
Query: 325 LEDNK-GNTALHIAIKKGRTQIVRCLLS 351
+ NK G+TALH A KG IV+ LL+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 121 DLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQ 180
D LH AA+ GNLS + E L + + ++ ++ G T LY A GH IVE +
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDN------RVGVNGLDKAGSTALYWACHGGHKDIVEXLFT 127
Query: 181 HMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
N+E + +N G + H AA +G+ ++++ LL
Sbjct: 128 QPNIE---LNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278
N V S LH AA +G++ + L+ + + + G T L+ A GH ++V
Sbjct: 64 NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIV 122
Query: 279 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 312
+ L ++ + +K G TALH A DIV
Sbjct: 123 EXLFTQPNIELNQQNKLGDTALHAAAWKGYADIV 156
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ DK G T LH+A + +IV L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V + D G T LH+ G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 73 VNAI-DAIGETPLHLVAMYGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 382 LLK 384
+L+
Sbjct: 131 ILQ 133
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
T LH AA H+++V LL+ +++ I G+T LH A GHLE+V+ L+
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAIDAI-GETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 290 FRTDKKGQTALHMAVKGQNEDI 311
+ DK G+TA +++ NED+
Sbjct: 108 AQ-DKFGKTAFDISIDNGNEDL 128
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L A GQ++++ ++ + + + ED G T LH+A +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
DVN+++ GE+PL + G+ E+ +L + HG +A + +T DI D
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ +++ G TPL++AA + H IVE +L++ +
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNAEDKVGLTPLHLAAMNDHLEIVEVLLKN-GADV 73
Query: 187 ASIPARNGYDSFHVAAKQGHLEVLKELL 214
+I A G H+ A GHLE+++ LL
Sbjct: 74 NAIDAI-GETPLHLVAMYGHLEIVEVLL 100
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 13/93 (13%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA +L V +L++ A D + GETPL++ A GH IVE +L+H
Sbjct: 51 LHLAAMNDHLEIVEVLLKNGADVNAIDAI------GETPLHLVAMYGHLEIVEVLLKH-- 102
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 103 --GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 132
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA+ G+ S +L++ + +A+ + + TPL++AA GHA IVE +L+H
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDR------TPLHMAASEGHANIVEVLLKH-- 89
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
A + A++ + H A + H EV+ ELL ++ V T C TA + G+
Sbjct: 90 --GADVNAKDMLKMTALHWATEHNHQEVV-ELLIKYGADVHTQSKFCKTAFDISIDNGNE 146
Query: 242 DVVNFL 247
D+ L
Sbjct: 147 DLAEIL 152
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
G + LH AA+ GH + L+ S RT K +T LHMA + +IV L++
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V +D TALH A + ++V L+ G DV++ +K ++ D++ GN +L
Sbjct: 93 V-NAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAE 150
Query: 382 LLK 384
+L+
Sbjct: 151 ILQ 153
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 222 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMGHLEVVKA 280
TTD ++ LH AA GH LL + +++ AR +T LH AA GH +V+
Sbjct: 28 FTTDWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHMAASEGHANIVEV 85
Query: 281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 340
L+ + D TALH A + ++++V LI+ V + TA I+I
Sbjct: 86 LLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDN 143
Query: 341 GRTQIVRCL 349
G + L
Sbjct: 144 GNEDLAEIL 152
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE--ID 251
G H+AA+ GH + LL + T + T LH AA++GH ++V LL+ D
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANIVEVLLKHGAD 92
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
N + + T LH A H EVV+ L+ ++ K +TA +++ NED+
Sbjct: 93 VNAKDMLK---MTALHWATEHNHQEVVELLIKYGADVHTQS-KFCKTAFDISIDNGNEDL 148
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 10/181 (5%)
Query: 175 VEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHT 234
V+E+LQ + + G ++A +E+ K L+ ++ + +S S L+
Sbjct: 21 VKEILQDTTYQVDEVDTE-GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLY- 78
Query: 235 AAAQGHIDVVNFLLE-IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTD 293
A AQG +++ ++L+ +L K R G ++ AA GH++ VK L+ +
Sbjct: 79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALI-PAAEKGHIDNVKLLLEDGREDIDFQN 137
Query: 294 KKGQTALHMAV---KGQN--EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 348
G TAL AV +G +DIV +L+ + + ++DN G TA+ A +KG T+I +
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIV-KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196
Query: 349 L 349
L
Sbjct: 197 L 197
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 299 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 358
AL A ++ V E+++ + D +GNT L+IA+ +I + L+ G D+N
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADIN 66
Query: 359 SLNKAGESPLDVAEKLGNTELFS-LLKEAGA---AHSKDHGKP--PSATK----QLKQTV 408
N +SP A G TE+ + +LK A H++ G P+A K +K +
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 409 SDIKHDVQSQ 418
D + D+ Q
Sbjct: 127 EDGREDIDFQ 136
Score = 35.4 bits (80), Expect = 0.087, Method: Composition-based stats.
Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 6/166 (3%)
Query: 231 ALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF 290
AL AA Q V +L+ + G T L+ A +E+ KAL+ +
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 291 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
+ L+ +G+ E + L P + K + G AL A +KG V+ LL
Sbjct: 68 QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK-HNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 351 SIEGIDVNSLNKAGESPL--DVAEKLGN---TELFSLLKEAGAAHS 391
D++ N G + L V + GN ++ LL E GA S
Sbjct: 127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L A GQ++++ ++ + + + +D G T LH+A ++G +IV LL G
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGA 59
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 387
DVN+ +K G++ D++ GN +L +L++A
Sbjct: 60 DVNAQDKFGKTAFDISIDNGNEDLAEILQKAA 91
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ +G T LH AAR GHLE+V+ L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 292 TDKKGQTALHMAVKGQNEDI 311
DK G+TA +++ NED+
Sbjct: 65 -DKFGKTAFDISIDNGNEDL 83
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
A + G+ VR L++ G DVN+ +K G +PL +A + G+ E+ +L +AGA
Sbjct: 9 AARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ K+++G TPL++AA GH IVE +L+
Sbjct: 9 AARAGQDDEVRILM----ANGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLK----AG 58
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 59 ADVNAQDKFGKTAFDISIDNGN-EDLAEIL 87
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 23/220 (10%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFP 218
G TPL +AA G L E +++ TA +V+ +LL +
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTA--------------------QVISDLLAQGA 41
Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278
L T D + T+LH AA D LL+ ++ A N G+T LH+A + V
Sbjct: 42 ELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVF 100
Query: 279 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 338
+ L+ + G T L +A + E +V +LI D + DN G TALH A
Sbjct: 101 QILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAA 159
Query: 339 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 378
T+ V LL + + ++ + E+PL +A + G+ E
Sbjct: 160 AVNNTEAVNILL-MHHANRDAQDDKDETPLFLAAREGSYE 198
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 293 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 352
D G+T LH AV + L+R + L + G T L +A + +V L++
Sbjct: 81 DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA 140
Query: 353 EGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
+ D+N+ + +G++ L A + NTE ++L
Sbjct: 141 DA-DINAADNSGKTALHWAAAVNNTEAVNIL 170
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 118 KRGDLQLHLAARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVE 176
K G+ LHLAAR +L + DAN ++ G TPL+ AA + A+ V
Sbjct: 49 KTGETSLHLAARFARADAAKRLLDAGADAN-------SQDNTGRTPLH-AAVAADAMGVF 100
Query: 177 EMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA 236
++L + +G +AA+ ++++L+ + + D S TALH AA
Sbjct: 101 QILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAA 159
Query: 237 AQGHIDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMGHLEVVKALVSK 284
A + + VN LL +N + A+++ +T L AAR G E KAL+
Sbjct: 160 AVNNTEAVNILLMHHAN--RDAQDDKDETPLFLAAREGSYEASKALLDN 206
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 51/209 (24%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDP 286
TALH A H ++FLL + + N G+T LH AA +G V+ L +
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS------------------------- 321
++ G TALH+A + + L++P PS
Sbjct: 70 GV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 322 ---------------------VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 360
L+ E+ G+T LH+A+ ++VR LL G D+N
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKP 187
Query: 361 NK-AGESPLDVAEKLGNTELFSLLKEAGA 388
G +PL +A + + LL +AGA
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 295 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 354
G T LH+AV ++ ++V L + K E G T LH+A++ ++ LL G
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-G 215
Query: 355 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGK 396
D + G +PL A N L LL+ GA +D G
Sbjct: 216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 51/209 (24%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDP 286
TALH A H ++FLL + + N G+T LH AA +G V+ L +
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS------------------------- 321
++ G TALH+A + + L++P PS
Sbjct: 70 GV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 322 ---------------------VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 360
L+ E+ G+T LH+A+ ++VR LL G D+N
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKP 187
Query: 361 NK-AGESPLDVAEKLGNTELFSLLKEAGA 388
G +PL +A + + LL +AGA
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 295 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 354
G T LH+AV ++ ++V L + K E G T LH+A++ ++ LL G
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-G 215
Query: 355 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGK 396
D + G +PL A N L LL+ GA +D G
Sbjct: 216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-XIQDNMGRTPLHA 61
Query: 337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 375
A+ + + LL D+++ G +PL +A +L
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLA 100
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 3/175 (1%)
Query: 209 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 268
V+ + + + +L TD + TALH AA D LLE ++ A I N G+T LH+
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHA 61
Query: 269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDD- 120
Query: 329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
G +ALH A LL G + + N E+PL +A + G+ E +L
Sbjct: 121 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNKEETPLFLAAREGSYETAKVL 174
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 222 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA--RNNGKTVLHSAARMGHLEVVK 279
M +DL L AA G D V L+ +N A +A NG T LH AAR GHLEVVK
Sbjct: 2 MGSDLG--KKLLEAARAGQDDEVRILM---ANGADVAAKDKNGSTPLHLAARNGHLEVVK 56
Query: 280 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 312
L+ + DK G+TA +++ NED+
Sbjct: 57 LLLEAGADVNAQ-DKFGKTAFDISIDNGNEDLA 88
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L A GQ++++ ++ + + + +D G+T LH+A + G ++V+ LL G
Sbjct: 7 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GA 63
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLK 384
DVN+ +K G++ D++ GN +L +L+
Sbjct: 64 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
A + G+ VR L++ G DV + +K G +PL +A + G+ E+ LL EAGA
Sbjct: 13 AARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ + DK G T LH+A + + ++V L+
Sbjct: 7 GKKLL-EAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCL 349
V +D G TA I+I G + L
Sbjct: 65 V-NAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ K++ G TPL++AA +GH +V+ +L+
Sbjct: 13 AARAGQDDEV-RILMANGAD-----VAAKDKNGSTPLHLAARNGHLEVVKLLLE----AG 62
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 63 ADVNAQDKFGKTAFDISIDNGN-EDLAEIL 91
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE 249
AA+ G + ++ L+ + V D + ST LH AA GH++VV LLE
Sbjct: 13 AARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
+NG H+AA+ GHLEV+K LL E V D TA + G+ D+ L
Sbjct: 37 KNGSTPLHLAARNGHLEVVKLLL-EAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 222 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA--RNNGKTVLHSAARMGHLEVVK 279
M +DL L AA G D V L+ +N A +A NG T LH AAR GHLEVVK
Sbjct: 20 MGSDLG--KKLLEAARAGQDDEVRILM---ANGADVAAKDKNGSTPLHLAARNGHLEVVK 74
Query: 280 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 312
L+ + DK G+TA +++ NED+
Sbjct: 75 LLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLA 106
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L A GQ++++ ++ + + + +D G+T LH+A + G ++V+ LL G
Sbjct: 25 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GA 81
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLK 384
DV + +K G++ D++ GN +L +L+
Sbjct: 82 DVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
A + G+ VR L++ G DV + +K G +PL +A + G+ E+ LL EAGA
Sbjct: 31 AARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ + DK G T LH+A + + ++V L+
Sbjct: 25 GKKLLE-AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCL 349
V +D G TA I+I G + L
Sbjct: 83 VXA-QDKFGKTAFDISIDNGNEDLAEIL 109
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ K++ G TPL++AA +GH +V+ +L+
Sbjct: 31 AARAGQDDEV-RILMANGAD-----VAAKDKNGSTPLHLAARNGHLEVVKLLLE----AG 80
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 81 ADVXAQDKFGKTAFDISIDNGN-EDLAEIL 109
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
+NG H+AA+ GHLEV+K LL E V D TA + G+ D+ L
Sbjct: 55 KNGSTPLHLAARNGHLEVVKLLL-EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 254
AA+ G + ++ L+ + V D + ST LH AA GH++VV LLE +++
Sbjct: 31 AARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 30/191 (15%)
Query: 216 EFPNL-VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH 274
+FP L + +D +H AA +G D V L+E + I G T LH A + G
Sbjct: 7 DFPKLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGC 65
Query: 275 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--------PDPSVLKLE 326
++ K L S GQ +H+AV D+V+ L+ P+ S+L
Sbjct: 66 VDTAKYLASVGEVHSLW---HGQKPIHLAVXANKTDLVVALVEGAKERGQXPE-SLLNEC 121
Query: 327 DN-------------KGNTALHIAIKKGRTQI--VRCLLSIEGIDVNSLNKAGESPLDVA 371
D KG TALH + G + ++ L+ + G + +KA E+PL A
Sbjct: 122 DEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQL-GASPTAKDKADETPLXRA 180
Query: 372 EKLGNTELFSL 382
+ N E L
Sbjct: 181 XEFRNREALDL 191
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
D++ +H+A +KG+T VR L+ G+ N+ G + L +A K G + L
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75
Query: 387 GAAHSKDHGKPP 398
G HS HG+ P
Sbjct: 76 GEVHSLWHGQKP 87
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 64
Query: 337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 375
A+ + + L+ D+++ G +PL +A +L
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 3/175 (1%)
Query: 209 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 268
V+ + + + +L TD + TALH AA D LLE ++ A I N G+T LH+
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 64
Query: 269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD- 123
Query: 329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
G +ALH A LL G + + N E+PL +A + G+ E +L
Sbjct: 124 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVL 177
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 91/211 (43%), Gaps = 26/211 (12%)
Query: 200 VAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR 259
+AAK+ ++ L +LL V TALH AA +++ L+E L
Sbjct: 9 LAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM 68
Query: 260 NN----GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK------------GQTALHMA 303
+ G+T LH A ++ +V+AL+++ S R G+ L A
Sbjct: 69 TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFA 128
Query: 304 VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI----KKGRTQIVRCLLSIEGID-VN 358
+E+IV LI + + +D+ GNT LHI I K Q+ LLS +G D +
Sbjct: 129 ACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLK 187
Query: 359 SL----NKAGESPLDVAEKLGNTELFSLLKE 385
SL N G +P +A GN +F L +
Sbjct: 188 SLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 26/131 (19%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK----KGQTALHMAVKGQNEDIVLELIR 317
G+T LH AA +LE L+ P F +GQTALH+AV QN ++V L
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRAL-- 94
Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
+ +G + R S+ ++L GE PL A +G+
Sbjct: 95 --------------------LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134
Query: 378 ELFSLLKEAGA 388
E+ LL E GA
Sbjct: 135 EIVRLLIEHGA 145
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 293 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 352
D +G TAL AVK I +L+ +V +D G T L +I G +++ LL
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLE- 122
Query: 353 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
G +VN N GE+PL VA K G +E+ L E GA
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 324 KLEDN--KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
KLED +G+TAL A+K R I LLS +G +VN+ + +G++PL + G +E+
Sbjct: 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSIIFGYSEMSY 118
Query: 382 LLKEAGA 388
L E GA
Sbjct: 119 FLLEHGA 125
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193
++ +N EGETPL VA++ G + IV+++L+ A I AR+
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLLEL----GADISARD 164
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIV 312
A+ AR N +L AA G LEVV+ V + DPS + +++G TALH A+ G N IV
Sbjct: 14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIV 70
Query: 313 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
LI +V D+ G T LH A T I L+
Sbjct: 71 DFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALV 107
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA G LEV+++ + E N + TALH A + +V+FL+ +N+ +
Sbjct: 28 AALTGELEVVQQAVKEM-NDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDS 85
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300
+G T LH AA + ALV + T G TA
Sbjct: 86 HGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAF 125
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 97
Query: 337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 374
A+ + + L+ D+++ G +PL +A +L
Sbjct: 98 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 135
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 3/175 (1%)
Query: 209 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 268
V+ + + + +L TD + TALH AA D LLE ++ A I N G+T LH+
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 97
Query: 269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 98 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD- 156
Query: 329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
G +ALH A LL G + + N E+PL +A + G+ E +L
Sbjct: 157 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVL 210
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 96
Query: 337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 374
A+ + + L+ D+++ G +PL +A +L
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 3/175 (1%)
Query: 209 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 268
V+ + + + +L TD + TALH AA D LLE ++ A I N G+T LH+
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 96
Query: 269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD- 155
Query: 329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
G +ALH A LL G + + N E+PL +A + G+ E +L
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVL 209
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ K++ G TPLY+A GH IVE +L++
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNAKDEYGLTPLYLATAHGHLEIVEVLLKN----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A + G+ H+AA GHLE+ + LL + V D TA + G+ D+
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLA 129
Query: 245 NFL 247
L
Sbjct: 130 EIL 132
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ + D+ G T L++A + +IV L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
V + D G T LH+A G +I LL G DVN+ +K G++ D++ GN +L
Sbjct: 73 VNAV-DAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAE 130
Query: 382 LLKE 385
+L++
Sbjct: 131 ILQK 134
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
G+ L A GQ++++ ++ + + + +D G T L++A G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDI 411
DVN+++ G +PL +A +G+ E+ +L + HG +A + +T DI
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLK--------HGADVNAQDKFGKTAFDI 119
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 266 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 325
L AA G ++ V+ L+ ++ ++ G+TAL + + G + + LEL++ S +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-SPAVALELLKQGASP-NV 69
Query: 326 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
+D G + +H A + G ++ L+ G DVN+L+ G P+ +A + G++ + S L
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128
Query: 386 AGAAHSKD 393
H +D
Sbjct: 129 ESDLHHRD 136
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 144 DANEAKDLLSKK-------NQEGETPLYVAAESGHALIVEEMLQHM--NLETASIPARNG 194
D E + LL ++ N+ G+T L V A+ +E + Q N++ AS G
Sbjct: 20 DVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDAS-----G 74
Query: 195 YDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
H AA+ G L+ LK L+ E V D + S +H A +GH VV+FL
Sbjct: 75 TSPVHDAARTGFLDTLKVLV-EHGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 266 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 325
L AA G ++ V+ L+ ++ ++ G+TAL + + G + + LEL++ S +
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-SPAVALELLKQGASP-NV 71
Query: 326 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
+D G + +H A + G ++ L+ G DVN+L+ G P+ +A + G++ + S L
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130
Query: 386 AGAAHSKD 393
H +D
Sbjct: 131 ESDLHHRD 138
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 144 DANEAKDLLSKK-------NQEGETPLYVAAESGHALIVEEMLQHM--NLETASIPARNG 194
D E + LL ++ N+ G+T L V A+ +E + Q N++ AS G
Sbjct: 22 DVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDAS-----G 76
Query: 195 YDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
H AA+ G L+ LK L+ E V D + S +H A +GH VV+FL
Sbjct: 77 TSPVHDAARTGFLDTLKVLV-EHGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 3/175 (1%)
Query: 209 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 268
V+ + + + +L TD + +TALH AAA D LLE ++ A I N G+T LH+
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 96
Query: 269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD- 155
Query: 329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
G +ALH A LL G + + N E+PL +A + G+ E +L
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVL 209
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 230 TALHTAAAQGHIDVVNFLL---EIDSNLAKIARNNGKTVL----HSAARMGHLEVVKALV 282
+ALH AAA + L ++ ++ ++ RN G T L H+ R + K LV
Sbjct: 201 SALHQAAANRDFGXXVYXLNSTKLKGDIEELDRN-GXTALXIVAHNEGR-DQVASAKLLV 258
Query: 283 SK----DPSTGFRTDK---KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH 335
K D R D KG+TALH A + N IV L+ S +D G T +
Sbjct: 259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIX 318
Query: 336 IAIKKGRTQIVRCLL----SIEGIDV 357
+A ++GR ++V L+ S+E +D
Sbjct: 319 LAAQEGRIEVVXYLIQQGASVEAVDA 344
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 293 DKKGQTALHMAVKGQNEDIVLEL---------IRPDPSVLK-LEDNKGNTALHIAIKKGR 342
D+ G TAL + + D V + D + K E KG TALH A +
Sbjct: 232 DRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291
Query: 343 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
IV+ L+ +G + + ++ G++P+ +A + G E+ L + GA+
Sbjct: 292 XPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHA 172
KDS +G LH AA+ N V ++ +N+ K++++G+TP+ +AA+ G
Sbjct: 272 KDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNK-----DKQDEDGKTPIXLAAQEGRI 326
Query: 173 LIVEEMLQ 180
+V ++Q
Sbjct: 327 EVVXYLIQ 334
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE 249
G + H AA+ + ++K L+GE + D T + AA +G I+VV +L++
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ 334
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 286 PSTGFRTDKKGQTALHMAVKGQNED--IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 343
P G + LH+AVK N+ +++ I + L + GNTALH A +
Sbjct: 161 PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQP 220
Query: 344 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
++ LL + V ++N+AGE+ LD+A K + E LL++A A
Sbjct: 221 DCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG 265
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 266 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 325
L AA G ++ V+ L+ ++ ++ G+TAL + + G I LEL++ S +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTA-IALELLKQGASP-NV 69
Query: 326 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
+D G + +H A + G ++ L+ G DVN + G P+ +A + G+T + S L
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 128
Query: 386 AGAAHSKD 393
H +D
Sbjct: 129 ESDLHRRD 136
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 266 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 325
L AA G ++ V+ L+ ++ ++ G+TAL + + G I LEL++ S +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTA-IALELLKQGASP-NV 63
Query: 326 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
+D G + +H A + G ++ L+ G DVN + G P+ +A + G+T + S L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 386 AGAAHSKD 393
H +D
Sbjct: 123 ESDLHRRD 130
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 286 PSTGFRTDKKGQTALHMAVKGQNED--IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 343
P G + LH+AVK N+ +++ I + L + GNTALH A +
Sbjct: 180 PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQP 239
Query: 344 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
++ LL + V ++N+AGE+ LD+A K + E LL++A A
Sbjct: 240 DCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 147 EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGH 206
E +++++ ++EG TPL AA G +VE +LQ NG D
Sbjct: 40 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ------------NGAD---------- 77
Query: 207 LEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
+LLG+ +AL A ++G+ D+V LL+ ++ + N G +L
Sbjct: 78 ----PQLLGK----------GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 123
Query: 267 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV 304
+ A H++ VK L+ TD G ++ +AV
Sbjct: 124 Y-AVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 159
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 291 RTDKKGQTALHMAVKGQNEDIVLELI---RPDPSVLKLEDNKG-NTALHIAIKKGRTQIV 346
TD++G T L M + V+E + DP +L KG +AL +A KG T IV
Sbjct: 47 HTDEEGFTPL-MWAAAHGQIAVVEFLLQNGADPQLL----GKGRESALSLACSKGYTDIV 101
Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
+ LL G+DVN + G +PL A + + +L E+GA
Sbjct: 102 KMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 147 EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGH 206
E +++++ ++EG TPL AA G +VE +LQ NG D
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ------------NGAD---------- 61
Query: 207 LEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
+LLG+ +AL A ++G+ D+V LL+ ++ + N G +L
Sbjct: 62 ----PQLLGK----------GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 107
Query: 267 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV 304
+ A H++ VK L+ TD G ++ +AV
Sbjct: 108 Y-AVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 143
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 291 RTDKKGQTALHMAVKGQNEDIVLELI---RPDPSVLKLEDNKG-NTALHIAIKKGRTQIV 346
TD++G T L M + V+E + DP +L KG +AL +A KG T IV
Sbjct: 31 HTDEEGFTPL-MWAAAHGQIAVVEFLLQNGADPQLL----GKGRESALSLACSKGYTDIV 85
Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
+ LL G+DVN + G +PL A + + +L E+GA
Sbjct: 86 KMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 147 EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGH 206
E +++++ ++EG TPL AA G +VE +LQ NG D
Sbjct: 22 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ------------NGAD---------- 59
Query: 207 LEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
+LLG+ +AL A ++G+ D+V LL+ ++ + N G +L
Sbjct: 60 ----PQLLGK----------GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 105
Query: 267 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV 304
+ A H++ VK L+ TD G ++ +AV
Sbjct: 106 Y-AVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 141
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 291 RTDKKGQTALHMAVKGQNEDIVLELI---RPDPSVLKLEDNKG-NTALHIAIKKGRTQIV 346
TD++G T L M + V+E + DP +L KG +AL +A KG T IV
Sbjct: 29 HTDEEGFTPL-MWAAAHGQIAVVEFLLQNGADPQLL----GKGRESALSLACSKGYTDIV 83
Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
+ LL G+DVN + G +PL A + + +L E+GA
Sbjct: 84 KMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 202 AKQGHLEVLKELL-GEFPNLVMTTDLSCS------TALHTAAAQGHIDVVNFLLEIDSNL 254
A +G +E L E G P+ V ++ ++ T TAA + ++ LLE D ++
Sbjct: 12 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDV 70
Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 314
+ NG+T L A +G + V+ L R + G TALHMA ++V
Sbjct: 71 DAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 315 LIRPDPSVLKLEDNKGNTALHIA 337
L+ + ++ED +G TAL +A
Sbjct: 130 LVELGADI-EVEDERGLTALELA 151
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN-TALHIAIKKGRTQIVRCLL 350
D+ G+TAL + V G D + L+ + L D +G TALH+A R ++V L+
Sbjct: 73 VDENGRTAL-LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131
Query: 351 SIEGIDVNSLNKAGESPLDVAEKL 374
+ G D+ ++ G + L++A ++
Sbjct: 132 EL-GADIEVEDERGLTALELAREI 154
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 297 QTALHMAVKGQNEDI--VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 354
+TALH+AV+ + +++ + + L + KG+TALH + ++ LL +
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229
Query: 355 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH 394
+ N++GE+PLD+A++L + LL +A + H
Sbjct: 230 -SIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH 268
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 193 NGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI 250
+G+ H A ++G V++ L+ G N++ D T LH AA+ GH D+V LL+
Sbjct: 33 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD---DTPLHLAASHGHRDIVQKLLQY 89
Query: 251 DSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 283
+++ + +G LH A G +V + LV+
Sbjct: 90 KADINAV-NEHGNVPLHYACFWGQDQVAEDLVA 121
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE- 385
D+ G + LH A ++GR+ +V L+ + G +N +N+ ++PL +A G+ ++ L +
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 89
Query: 386 -AGAAHSKDHGKPP 398
A +HG P
Sbjct: 90 KADINAVNEHGNVP 103
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LH A R G S V+E+L A ++ N+ +TPL++AA GH IV+++LQ+
Sbjct: 38 LHWACREGR-SAVVEMLIMRGAR-----INVMNRGDDTPLHLAASHGHRDIVQKLLQY-- 89
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLG 215
A I A N G H A G +V ++L+
Sbjct: 90 --KADINAVNEHGNVPLHYACFWGQDQVAEDLVA 121
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLK 211
L++ + G +PL+ A G + +VE ++ M ++ R H+AA GH ++++
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLI--MRGARINVMNRGDDTPLHLAASHGHRDIVQ 84
Query: 212 ELL 214
+LL
Sbjct: 85 KLL 87
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 193 NGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI 250
+G+ H A ++G V++ L+ G N++ D T LH AA+ GH D+V LL+
Sbjct: 38 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD---DTPLHLAASHGHRDIVQKLLQY 94
Query: 251 DSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 283
+++ + +G LH A G +V + LV+
Sbjct: 95 KADINAV-NEHGNVPLHYACFWGQDQVAEDLVA 126
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE- 385
D+ G + LH A ++GR+ +V L+ + G +N +N+ ++PL +A G+ ++ L +
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 386 -AGAAHSKDHGKPP 398
A +HG P
Sbjct: 95 KADINAVNEHGNVP 108
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LH A R G S V+E+L A ++ N+ +TPL++AA GH IV+++LQ+
Sbjct: 43 LHWACREGR-SAVVEMLIMRGAR-----INVMNRGDDTPLHLAASHGHRDIVQKLLQY-- 94
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLG 215
A I A N G H A G +V ++L+
Sbjct: 95 --KADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLK 211
L++ + G +PL+ A G + +VE ++ M ++ R H+AA GH ++++
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLI--MRGARINVMNRGDDTPLHLAASHGHRDIVQ 89
Query: 212 ELL 214
+LL
Sbjct: 90 KLL 92
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 91/230 (39%), Gaps = 36/230 (15%)
Query: 165 VAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPN-LVMT 223
+AAE+GH ++ + + E + Y +F +AA+ GHL VL L P
Sbjct: 134 LAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAX 193
Query: 224 TDLSCSTALHTAA-AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV 282
A AA +GH +V+NFLL+ LA A + E + V
Sbjct: 194 IQAENYYAFRWAAVGRGHHNVINFLLDCPVXLAY-------------AEIHEFEYGEKYV 240
Query: 283 SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 342
+P ++ + H A K N D V +L V K E +G L I++
Sbjct: 241 --NPFIARHVNRLKEX--HDAFKLSNPDGVFDL------VTKSECLQGFYXLRNLIRRND 290
Query: 343 TQI---VRCLLSIEGIDVNSLNKAGESPLDVAE------KLGNTELFSLL 383
+ +R LLSI GI +L P D E +LGN +LL
Sbjct: 291 EVLLDDIRFLLSIPGIK--ALAPTATIPGDANELLRLALRLGNQGACALL 338
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 98/242 (40%), Gaps = 76/242 (31%)
Query: 153 SKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKE 212
++ +++G+TPL H+A QG+L +
Sbjct: 3 TRADEDGDTPL-----------------------------------HIAVVQGNLPAVHR 27
Query: 213 LLGEFPNLVMTTDLSCSTALHTAAAQG--HIDVVNFLLEIDSNLAKIARNNGKTVLHSAA 270
L+ F QG +D+ N L + +LA I T L S
Sbjct: 28 LVNLF-------------------QQGGRELDIYNNLRQTPLHLAVI------TTLPS-- 60
Query: 271 RMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI-RPDPSVLKLE--D 327
VV+ LV+ S D+ GQTA H+A + ++ + L+ P L LE +
Sbjct: 61 ------VVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113
Query: 328 NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN-KAGESPLDVAEKLGNTELFSLLKEA 386
G TALH+A+ + V+ LL G D+++++ K+G SPL A + + + LL +
Sbjct: 114 YDGLTALHVAVNTECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172
Query: 387 GA 388
GA
Sbjct: 173 GA 174
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 8/202 (3%)
Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCS---TALHTAAAQGHIDVVNFLLE 249
+G H+A QG+L + L+ F D+ + T LH A VV L+
Sbjct: 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Query: 250 IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK---GQTALHMAVKG 306
++ + R+ G+T H A ++AL+ + + G TALH+AV
Sbjct: 68 AGASPMALDRH-GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126
Query: 307 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGES 366
+ ++ V L+ + ++ G + L A++ +V+ LL G +VN+ +G S
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSS 185
Query: 367 PLDVAEKLGNTELFSLLKEAGA 388
L A G L L +GA
Sbjct: 186 ALHSASGRGLLPLVRTLVRSGA 207
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 108/262 (41%), Gaps = 53/262 (20%)
Query: 120 GDLQLHLAARAGNLS---RVMEILQSCDANEAKDLLSKKNQEGETPLYVAA----ESGHA 172
GD LH+A GNL R++ + Q + L N +TPL++A S
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQ-----QGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 173 LIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTAL 232
L+V M L+ R+G + H+A + P +C AL
Sbjct: 64 LLVTAGASPMALD------RHGQTAAHLACEH-----------RSP--------TCLRAL 98
Query: 233 HTAAAQGHIDVVNFLLEIDSNLAKIARN-NGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
+AA G +D LE ARN +G T LH A E V+ L+ +
Sbjct: 99 LDSAAPGTLD-----LE--------ARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
K G++ L AV+ + +V L++ +V + G++ALH A +G +VR L+
Sbjct: 146 DIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVR 204
Query: 352 IEGIDVNSLNKAGESPLDVAEK 373
G D + N ++PL VA
Sbjct: 205 -SGADSSLKNCHNDTPLMVARS 225
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 202 AKQGHLEVLKELL-GEFPNLVMTTDLSC------STALHTAAAQGHIDVVNFLLEIDSNL 254
A +G +E L E G P+ V ++ ++ T TAA + ++ LLE D ++
Sbjct: 11 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDV 69
Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 314
+ N G+T L A +G + V+ L R + G TALHMA ++V
Sbjct: 70 DAVDEN-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 315 LIRPDPSVLKLEDNKGNTALHIA 337
L+ + ++ED +G TAL +A
Sbjct: 129 LVELGADI-EVEDERGLTALELA 150
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 293 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN-TALHIAIKKGRTQIVRCLLS 351
D+ G+TAL + V G D + L+ + L D +G TALH+A R ++V L+
Sbjct: 73 DENGRTAL-LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNT 377
+ G D+ ++ G + L++A ++ T
Sbjct: 132 L-GADIEVEDERGLTALELAREILKT 156
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
D+ G LH A G T + CL G D+ + + G PL +A + N ++ +LL+ A
Sbjct: 265 DSAGRGPLHHATILGHTGLA-CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
D+ G LH A G T + CL G D+ + + G PL +A + N ++ +LL+ A
Sbjct: 265 DSAGRGPLHHATILGHTGLA-CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
D+ G LH A G T + CL G D+ + + G PL +A + N ++ +LL+ A
Sbjct: 265 DSAGRGPLHHATILGHTGLA-CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 153 SKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKE 212
S+ + +G T LY A +SG+ V+ ++ N SF+ A + ++
Sbjct: 89 SQFDDKGNTALYYAVDSGNXQTVKLFVKK-NWRLXFYGKTGWKTSFYHAVXLNDVSIVSY 147
Query: 213 LLGEFPNLV-MTTDLSCSTALHTAAAQGHIDVVNFLLE 249
L E P+ + LSC +H GH+D LL+
Sbjct: 148 FLSEIPSTFDLAILLSC---IHITIKNGHVDXXILLLD 182
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 266 LHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVL 323
LH AA + ++VK L+ D S + D KG TAL+ AV N V ++ + +
Sbjct: 66 LHQAATLEDTKIVKILLFSGLDDS---QFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLX 122
Query: 324 KLEDNKGNTALHIAIKKGRTQIVRCLLS 351
T+ + A+ IV LS
Sbjct: 123 FYGKTGWKTSFYHAVXLNDVSIVSYFLS 150
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI 257
F A K G L+ +K+ + + ++ T + LH AA G ++++ FLL +++
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 258 ARNNGKTVLHSAARMGHLEVVKALVSK 284
+++ T L SA GH+ VK L+SK
Sbjct: 70 DKHH-ITPLLSAVYEGHVSCVKLLLSK 95
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 330 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
G LH A G+ +I+ LL ++G D+N+ +K +PL A G+ LL GA
Sbjct: 40 GRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI 257
F A K G L+ +K+ + + ++ T + LH AA G ++++ FLL +++
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLLKGADINAP 64
Query: 258 ARNNGKTVLHSAARMGHLEVVKALVSK 284
+++ T L SA GH+ VK L+SK
Sbjct: 65 DKHH-ITPLLSAVYEGHVSCVKLLLSK 90
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 33/150 (22%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK------------GQTALHMAVKGQNE 309
G + LH A L+ VK LV R + G+ L +A +
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 310 DIVLELIRP--DPSVLKLEDNKGNTALH----------------IAIKKGRTQI-VRCLL 350
D+V L+ P+ L+ D+ GNT LH I + G Q+ R
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209
Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELF 380
+++ +++ N G +PL +A K G E+F
Sbjct: 210 TVQLEEIS--NHQGLTPLKLAAKEGKIEIF 237
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 33/150 (22%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK------------GQTALHMAVKGQNE 309
G + LH A L+ VK LV R + G+ L +A +
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 162
Query: 310 DIVLELIR-P-DPSVLKLEDNKGNTALH----------------IAIKKGRTQI-VRCLL 350
D+V L+ P P+ L+ D+ GNT LH I + G Q+ R
Sbjct: 163 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 222
Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELF 380
+++ +++ N G +PL +A K G E+F
Sbjct: 223 TVQLEEIS--NHQGLTPLKLAAKEGKIEIF 250
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 331 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
+ L A +G+ + VR LL G D N+LN+ G P+ V +G+ ++ LL GA
Sbjct: 13 DAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQVM-MMGSAQVAELLLLHGA 68
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVS--KDPSTGFRTDKKG 296
+N+ +NG T L+ AAR+G++ +V AL+ DP F +K G
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP---FIANKSG 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,531,596
Number of Sequences: 62578
Number of extensions: 583204
Number of successful extensions: 2696
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1366
Number of HSP's gapped (non-prelim): 523
length of query: 630
length of database: 14,973,337
effective HSP length: 105
effective length of query: 525
effective length of database: 8,402,647
effective search space: 4411389675
effective search space used: 4411389675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)