BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006803
(630 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
Length = 338
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 10/216 (4%)
Query: 411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSE--TEAKAALCNDI 468
T V + ++ L E RP ++S+ NA+R+ R K+ + + + + N
Sbjct: 59 TNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAA 117
Query: 469 DRFINEKIILADKVIVR---HAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVV 525
FI+ ++K + R A ++ DGDV++T+ S ++ A E GK +V+V
Sbjct: 118 KEFIHN----SEKALERIGEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVT 173
Query: 526 DSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTA 585
++RPK +G+ + L + G+ Y +A + M +V +GA S+ NG +++GTA
Sbjct: 174 ETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTA 233
Query: 586 CVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621
+A+ A RV +I E YKFH L + E+
Sbjct: 234 LIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEM 269
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
Length = 338
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 10/216 (4%)
Query: 411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSE--TEAKAALCNDI 468
T V + ++ L E RP ++S+ NA+R+ R K+ + + + + N
Sbjct: 59 TNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAA 117
Query: 469 DRFINEKIILADKVIVR---HAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVV 525
FI+ ++K + R A ++ DGDV++T+ S ++ A E GK +V+V
Sbjct: 118 KEFIHN----SEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVT 173
Query: 526 DSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTA 585
++RPK +G+ + L + G+ Y +A + M +V +GA S+ NG +++GTA
Sbjct: 174 ETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTA 233
Query: 586 CVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621
+A+ A RV +I E YKFH L + E+
Sbjct: 234 LIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEM 269
>pdb|3A9C|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 321
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 9/216 (4%)
Query: 411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSE--TEAKAALCNDI 468
T V + ++ L E RP ++S+ NA+R+ R K+ + + + + N
Sbjct: 41 TNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAA 99
Query: 469 DRFIN--EKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEM-ILLYAHELGKQFRVVVV 525
FI+ EK A + I A ++ DGDV++T+ + ++ A E GK +V+V
Sbjct: 100 KEFIHNSEK---ALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVT 156
Query: 526 DSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTA 585
++RPK +G+ + L + G+ Y +A + M +V +GA S+ NG +++GTA
Sbjct: 157 ETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTA 216
Query: 586 CVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621
+A+ A RV +I E YKFH L + E+
Sbjct: 217 LIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEM 252
>pdb|3A9C|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 322
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 11/217 (5%)
Query: 411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRF--QKSRIAKLPLTLSETEAKAALCNDI 468
T V + ++ L E RP ++S+ NA+R+ + +IA E + + + N
Sbjct: 42 TNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLE-QLRFVIINAA 100
Query: 469 DRFINEKIILADKVIVR---HAATKVRDGDVLLTYGSSCVVEM-ILLYAHELGKQFRVVV 524
FI+ ++K + R A ++ DGDV++T+ + ++ A E GK +V+V
Sbjct: 101 KEFIHN----SEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIV 156
Query: 525 VDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGT 584
++RPK +G+ + L + G+ Y +A + M +V +GA S+ NG +++GT
Sbjct: 157 TETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGT 216
Query: 585 ACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621
A +A+ A RV +I E YKFH L + E+
Sbjct: 217 ALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEM 253
>pdb|3A9C|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 323
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 11/217 (5%)
Query: 411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSE--TEAKAALCNDI 468
T V + ++ L E RP ++S+ NA+R+ R K+ + + + + N
Sbjct: 43 TNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAA 101
Query: 469 DRFINEKIILADKVIVR---HAATKVRDGDVLLTYGSSCVVEM-ILLYAHELGKQFRVVV 524
FI+ ++K + R A ++ DGDV++T+ + ++ A E GK +V+V
Sbjct: 102 KEFIHN----SEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIV 157
Query: 525 VDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGT 584
++RPK +G+ + L + G+ Y +A + M +V +GA S+ NG +++GT
Sbjct: 158 TETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGT 217
Query: 585 ACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621
A +A+ A RV +I E YKFH L + E+
Sbjct: 218 ALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEM 254
>pdb|3A9C|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 326
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 11/212 (5%)
Query: 411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSE--TEAKAALCNDI 468
T V + ++ L E RP ++S+ NA+R+ R K+ + + + + N
Sbjct: 49 TNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAA 107
Query: 469 DRFINEKIILADKVIVR---HAATKVRDGDVLLTYGSSCVVEM-ILLYAHELGKQFRVVV 524
FI+ ++K + R A ++ DGDV++T+ + ++ A E GK +V+V
Sbjct: 108 KEFIHN----SEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIV 163
Query: 525 VDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGT 584
++RPK +G+ + L + G+ Y +A + M +V +GA S+ NG +++GT
Sbjct: 164 TETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGT 223
Query: 585 ACVAMVAHAFRVPVLICCEAYKFHERVQLDSI 616
A +A+ A RV +I E YKFH L I
Sbjct: 224 ALIALTAKEHRVWTMIAAETYKFHPETMLVEI 255
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
pdb|1VB5|B Chain B, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
Length = 276
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%)
Query: 487 AATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLS 546
A + DGDV++T+ S V I+ A E K+F+V++ +S P +EG L R L G+
Sbjct: 103 GAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIE 162
Query: 547 CTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYK 606
+ E + +GA + +G ++ GT +A+ H +P + E YK
Sbjct: 163 FEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYK 222
Query: 607 FH 608
FH
Sbjct: 223 FH 224
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|B Chain B, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|C Chain C, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|D Chain D, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|E Chain E, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|F Chain F, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|G Chain G, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|H Chain H, Crystal Structure Of Human Eif2b Alpha
Length = 315
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%)
Query: 489 TKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCT 548
T ++DG +LT+ S VV +L A K+F V V +S+P G+ + L + T
Sbjct: 117 TFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKXAKALCHLNVPVT 176
Query: 549 YTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKF 607
AV YI + V +GA V+ NG +++GT A+ A A P + E++KF
Sbjct: 177 VVLDAAVGYIXEKADLVIVGAEGVVENGGIINKIGTNQXAVCAKAQNKPFYVVAESFKF 235
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|B Chain B, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|C Chain C, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|D Chain D, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
Length = 351
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 486 HAATKVRDGDVLLTY---GSSCVVEM-----ILLYAHELGKQFRVVVVDSRPKHEGQAL- 536
+ A + DGDV+LTY G V+ ++ A E GK+ RV+ ++RP ++G L
Sbjct: 139 YGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQGSRLT 198
Query: 537 LRRLLAKGLSCTYTHINAVSYIMHE--VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAF 594
L+ G+ T + V +M + V +V +GA ++ + ++++GT V++VA
Sbjct: 199 CWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTVSVVAKHH 257
Query: 595 RVPVLICCEAYKF-HERVQLDSI 616
+P + F ER D +
Sbjct: 258 NIPFYVAAPKATFDWERTAKDVV 280
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|B Chain B, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|C Chain C, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|D Chain D, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
Length = 347
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 477 ILADKVIVRHAATKVRDGDVLLTY---GSSCVVEM-----ILLYAHELGKQFRVVVVDSR 528
I +K I ++ A ++DG +LT+ G+ V+ ++ A E GK+ RV ++R
Sbjct: 132 IEVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETR 191
Query: 529 PKHEGQALLRRLLAK-GLSCTYTHINAVSYIMHE--VTRVFLGASSVLSNGTTYSRVGTA 585
P +G L L K G+ N ++ + V +GA + NG T +++GT
Sbjct: 192 PYLQGARLTAWELXKDGIEVYVITDNXAGWLXKRGLIDAVVVGADRIALNGDTANKIGTY 251
Query: 586 CVAMVAHAFRVPVLICC 602
+A++A +P +
Sbjct: 252 SLAVLAKRNNIPFYVAA 268
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 481 KVIVRHAATKVRDGDVLLT-----------YGSSCVVEMILLYAHELGKQFRVVVVDSRP 529
++I ++A + GD ++T YG++ + L +LG + ++RP
Sbjct: 161 RLIGQNALQLFKKGDRIMTICNAGSIATSRYGTA-LAPFYLAKQKDLG--LHIYACETRP 217
Query: 530 KHEGQALL-RRLLAKGLSCTYTHINAVSYIMHE--VTRVFLGASSVLSNGTTYSRVGTAC 586
+G L L+ G+ T + ++ M E ++ V +GA + NG T +++GT
Sbjct: 218 VLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYG 277
Query: 587 VAMVAHAFRVPVLICCEAYKFHERVQ 612
+A++A+AF +P + F +V+
Sbjct: 278 LAILANAFDIPFFVAAPLSTFDTKVK 303
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
pdb|2A0U|B Chain B, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
Length = 383
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 26/200 (13%)
Query: 414 RDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFIN 473
R++ + + F+ RP ++++ N +R K+++ KL T + E A ++ +
Sbjct: 91 REVQTFLLTSCDFVXTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFV-ELAEAVY 149
Query: 474 EKIILADKVIVRHAATKV--------RDGDVLLT-----------YGSSCVVEMILLYAH 514
+ ++ I RH A + RD +LT YG++ V L Y
Sbjct: 150 TNDVAFNEGIXRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYD- 208
Query: 515 ELGKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTHINAVSYIM--HEVTRVFLGASS 571
GK RV ++RP ++G L + + + + CT A S + ++ V +GA
Sbjct: 209 --GKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLXLNRKIDAVVVGADR 266
Query: 572 VLSNGTTYSRVGTACVAMVA 591
+ NG T +++GT +A+ A
Sbjct: 267 ICQNGDTANKIGTYNLAVSA 286
>pdb|1W2W|B Chain B, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|F Chain F, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|J Chain J, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|N Chain N, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
Length = 191
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 522 VVVVDSRPKHEGQALLR-RLLAKGLSCTYTHINAVSYIMHE----VTRVFLGASSVLSNG 576
V +++RP ++G L L+ + T ++++Y + + F+GA ++ NG
Sbjct: 7 VFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNG 66
Query: 577 TTYSRVGTACVAMVAHAFRVPVLI 600
T +++GT +A++ F + +
Sbjct: 67 DTANKIGTLQLAVICKQFGIKFFV 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,152,784
Number of Sequences: 62578
Number of extensions: 543116
Number of successful extensions: 1128
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1105
Number of HSP's gapped (non-prelim): 15
length of query: 630
length of database: 14,973,337
effective HSP length: 105
effective length of query: 525
effective length of database: 8,402,647
effective search space: 4411389675
effective search space used: 4411389675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)